Query 041957
Match_columns 734
No_of_seqs 301 out of 1699
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-194 4E-199 1664.5 67.2 714 7-728 27-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 7E-145 2E-149 1207.7 41.5 607 7-644 17-640 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 9.9E-87 2.1E-91 717.0 18.2 286 16-308 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2.8E-38 6.1E-43 362.6 14.2 281 10-294 1-332 (673)
5 PF02140 Gal_Lectin: Galactose 99.8 7.5E-22 1.6E-26 171.1 4.9 78 648-727 1-80 (80)
6 KOG4729 Galactoside-binding le 99.8 1.9E-21 4.1E-26 197.2 8.4 90 642-732 41-134 (265)
7 PF02449 Glyco_hydro_42: Beta- 99.8 3.2E-20 6.9E-25 205.4 10.7 259 31-311 2-373 (374)
8 PF13364 BetaGal_dom4_5: Beta- 99.1 1.2E-10 2.7E-15 107.4 6.8 69 552-626 33-104 (111)
9 PF02836 Glyco_hydro_2_C: Glyc 98.9 4.5E-08 9.9E-13 105.3 18.3 144 10-187 1-157 (298)
10 PF13364 BetaGal_dom4_5: Beta- 98.7 1.6E-07 3.6E-12 86.6 10.7 84 401-486 23-110 (111)
11 PRK10150 beta-D-glucuronidase; 98.6 8.6E-07 1.9E-11 104.6 16.9 151 8-186 276-447 (604)
12 PF00150 Cellulase: Cellulase 98.6 5E-07 1.1E-11 95.0 12.5 155 20-187 4-171 (281)
13 PRK10340 ebgA cryptic beta-D-g 98.4 5.2E-06 1.1E-10 103.0 15.8 141 8-183 318-471 (1021)
14 PRK09525 lacZ beta-D-galactosi 98.3 9.5E-06 2.1E-10 100.7 17.8 140 8-185 334-486 (1027)
15 COG3250 LacZ Beta-galactosidas 98.2 1.2E-05 2.6E-10 96.6 14.8 113 8-155 284-409 (808)
16 PF02837 Glyco_hydro_2_N: Glyc 97.9 4.4E-05 9.5E-10 74.8 9.2 95 409-505 64-163 (167)
17 PLN02803 beta-amylase 97.6 0.00015 3.2E-09 81.9 7.9 79 38-122 106-196 (548)
18 PLN00197 beta-amylase; Provisi 97.6 0.00017 3.6E-09 81.8 8.0 80 37-122 125-216 (573)
19 PLN02705 beta-amylase 97.6 0.00014 3.1E-09 82.9 7.5 80 37-122 266-357 (681)
20 PLN02801 beta-amylase 97.6 0.00018 3.9E-09 80.9 8.1 79 37-121 35-125 (517)
21 PLN02161 beta-amylase 97.5 0.00024 5.1E-09 80.0 8.4 79 39-123 117-207 (531)
22 PLN02905 beta-amylase 97.5 0.00019 4.2E-09 82.0 7.8 78 39-122 286-375 (702)
23 TIGR03356 BGL beta-galactosida 97.4 0.00027 5.8E-09 80.2 6.6 72 39-118 54-126 (427)
24 smart00633 Glyco_10 Glycosyl h 97.4 0.00027 5.8E-09 74.6 6.0 115 62-188 3-125 (254)
25 PF03198 Glyco_hydro_72: Gluca 97.3 0.0015 3.3E-08 70.1 11.2 146 7-184 8-179 (314)
26 PF01373 Glyco_hydro_14: Glyco 97.3 0.00023 5E-09 78.7 4.4 75 40-117 17-96 (402)
27 PF13204 DUF4038: Protein of u 97.0 0.006 1.3E-07 65.8 12.0 227 14-256 2-274 (289)
28 PF02837 Glyco_hydro_2_N: Glyc 96.8 0.0027 6E-08 62.0 6.3 67 552-626 66-136 (167)
29 PF14488 DUF4434: Domain of un 96.4 0.038 8.2E-07 54.8 11.7 129 34-183 15-156 (166)
30 COG2730 BglC Endoglucanase [Ca 96.1 0.017 3.6E-07 65.3 8.7 116 37-155 66-193 (407)
31 PF00232 Glyco_hydro_1: Glycos 96.1 0.0034 7.4E-08 71.9 2.9 71 39-117 58-130 (455)
32 PRK10150 beta-D-glucuronidase; 95.8 0.03 6.4E-07 66.5 8.9 73 410-484 62-137 (604)
33 PRK10340 ebgA cryptic beta-D-g 95.7 0.035 7.6E-07 69.6 9.5 90 413-507 109-205 (1021)
34 PF00331 Glyco_hydro_10: Glyco 95.7 0.0072 1.6E-07 66.1 3.0 148 26-188 11-178 (320)
35 PRK09525 lacZ beta-D-galactosi 95.4 0.055 1.2E-06 67.9 9.7 89 413-506 120-216 (1027)
36 PRK09852 cryptic 6-phospho-bet 95.4 0.02 4.3E-07 65.9 5.4 70 39-116 71-142 (474)
37 PF07745 Glyco_hydro_53: Glyco 95.0 0.037 8.1E-07 60.7 5.9 96 42-155 27-137 (332)
38 PRK15014 6-phospho-beta-glucos 95.0 0.041 8.8E-07 63.4 6.5 70 39-116 69-140 (477)
39 TIGR01233 lacG 6-phospho-beta- 94.7 0.056 1.2E-06 62.2 6.6 71 39-117 53-124 (467)
40 PLN02998 beta-glucosidase 94.6 0.046 1E-06 63.3 5.6 106 39-188 82-189 (497)
41 PRK09593 arb 6-phospho-beta-gl 94.5 0.061 1.3E-06 62.0 6.4 106 39-188 73-181 (478)
42 PRK09589 celA 6-phospho-beta-g 94.2 0.069 1.5E-06 61.6 5.9 106 39-188 67-175 (476)
43 PRK13511 6-phospho-beta-galact 93.9 0.099 2.2E-06 60.2 6.5 71 39-117 54-125 (469)
44 PLN02849 beta-glucosidase 93.6 0.11 2.3E-06 60.4 5.9 106 39-188 79-186 (503)
45 PLN02814 beta-glucosidase 93.3 0.14 3E-06 59.5 6.2 108 39-190 77-186 (504)
46 COG3867 Arabinogalactan endo-1 93.3 0.35 7.6E-06 51.6 8.5 102 41-155 65-183 (403)
47 PRK09936 hypothetical protein; 92.9 0.19 4.1E-06 53.7 6.0 58 35-98 34-92 (296)
48 COG3693 XynA Beta-1,4-xylanase 92.2 0.35 7.6E-06 52.3 7.0 124 48-188 55-193 (345)
49 smart00642 Aamy Alpha-amylase 92.2 0.35 7.6E-06 47.9 6.6 63 40-102 20-94 (166)
50 PF14871 GHL6: Hypothetical gl 91.6 0.48 1E-05 45.3 6.5 73 43-120 4-85 (132)
51 COG2723 BglB Beta-glucosidase/ 91.1 0.28 6.2E-06 55.7 5.1 72 39-118 59-132 (460)
52 KOG0496 Beta-galactosidase [Ca 90.3 0.23 5E-06 58.1 3.6 30 277-306 324-353 (649)
53 PF11875 DUF3395: Domain of un 87.9 0.85 1.8E-05 44.6 5.1 70 659-730 55-136 (151)
54 TIGR01515 branching_enzym alph 85.9 1.8 3.8E-05 51.8 7.3 69 30-98 143-226 (613)
55 PF02638 DUF187: Glycosyl hydr 85.9 2.2 4.9E-05 46.5 7.6 59 37-98 17-90 (311)
56 PF05913 DUF871: Bacterial pro 85.8 1.3 2.8E-05 49.3 5.7 70 27-102 2-71 (357)
57 PF00128 Alpha-amylase: Alpha 85.5 0.84 1.8E-05 48.2 4.0 59 42-100 7-74 (316)
58 PRK09441 cytoplasmic alpha-amy 85.2 1.3 2.9E-05 51.1 5.7 61 38-98 18-101 (479)
59 PF13200 DUF4015: Putative gly 80.5 4.6 0.0001 44.2 7.2 62 37-98 11-81 (316)
60 cd06593 GH31_xylosidase_YicI Y 80.2 3.6 7.7E-05 44.6 6.3 67 37-103 22-91 (308)
61 TIGR02402 trehalose_TreZ malto 79.9 3 6.6E-05 49.0 6.1 53 43-98 115-180 (542)
62 PLN02447 1,4-alpha-glucan-bran 79.7 3.1 6.8E-05 50.6 6.1 60 39-99 251-321 (758)
63 TIGR00542 hxl6Piso_put hexulos 79.5 14 0.00031 39.1 10.6 58 38-98 15-73 (279)
64 PRK12313 glycogen branching en 78.4 3.8 8.1E-05 49.2 6.3 54 45-98 177-240 (633)
65 cd06595 GH31_xylosidase_XylS-l 78.1 17 0.00037 39.2 10.8 71 31-101 14-97 (292)
66 TIGR02403 trehalose_treC alpha 76.3 3.8 8.3E-05 48.2 5.5 58 40-99 28-96 (543)
67 COG3934 Endo-beta-mannanase [C 76.1 2 4.3E-05 48.9 2.8 151 16-176 3-168 (587)
68 TIGR01531 glyc_debranch glycog 75.0 7.5 0.00016 50.0 7.7 62 37-98 130-205 (1464)
69 PRK10933 trehalose-6-phosphate 74.0 6.3 0.00014 46.5 6.5 55 41-98 35-101 (551)
70 PLN02960 alpha-amylase 73.6 6.6 0.00014 48.3 6.6 57 42-98 420-486 (897)
71 PRK09505 malS alpha-amylase; R 73.3 5.8 0.00012 48.0 6.0 58 41-98 232-312 (683)
72 TIGR02456 treS_nterm trehalose 72.5 7.1 0.00015 45.9 6.4 56 40-98 29-96 (539)
73 TIGR02104 pulA_typeI pullulana 72.1 6.4 0.00014 47.0 6.0 55 43-98 168-249 (605)
74 cd04908 ACT_Bt0572_1 N-termina 71.9 14 0.00031 30.2 6.4 55 38-96 12-66 (66)
75 PRK05402 glycogen branching en 71.4 7.5 0.00016 47.4 6.5 51 45-98 272-335 (726)
76 PF13199 Glyco_hydro_66: Glyco 70.6 9.1 0.0002 45.1 6.7 79 39-117 118-211 (559)
77 cd06589 GH31 The enzymes of gl 70.0 7.3 0.00016 41.3 5.3 71 31-102 13-90 (265)
78 KOG4729 Galactoside-binding le 69.9 5.5 0.00012 42.0 4.2 95 635-731 133-234 (265)
79 PRK12568 glycogen branching en 68.5 9.6 0.00021 46.3 6.4 54 44-100 275-341 (730)
80 PF11324 DUF3126: Protein of u 68.4 13 0.00029 30.9 5.3 32 436-467 25-58 (63)
81 PF08531 Bac_rhamnosid_N: Alph 68.0 23 0.00049 35.2 8.1 55 431-486 7-68 (172)
82 PF06832 BiPBP_C: Penicillin-B 67.4 9.5 0.00021 33.4 4.7 50 430-487 34-84 (89)
83 PRK10785 maltodextrin glucosid 67.4 11 0.00023 45.0 6.5 57 42-98 182-246 (598)
84 cd06591 GH31_xylosidase_XylS X 66.1 11 0.00024 41.1 5.9 72 31-103 13-91 (319)
85 PLN02361 alpha-amylase 65.9 13 0.00027 42.3 6.4 57 42-98 32-96 (401)
86 PF08308 PEGA: PEGA domain; I 65.2 6.6 0.00014 32.7 3.1 45 431-487 3-47 (71)
87 PRK14706 glycogen branching en 65.2 11 0.00025 45.2 6.2 54 45-98 174-237 (639)
88 PF14683 CBM-like: Polysacchar 64.8 5.7 0.00012 39.5 3.0 53 577-630 91-153 (167)
89 cd06602 GH31_MGAM_SI_GAA This 64.7 12 0.00026 41.3 5.9 73 31-104 13-92 (339)
90 cd06598 GH31_transferase_CtsZ 64.1 14 0.00031 40.3 6.2 67 37-103 22-95 (317)
91 PRK14705 glycogen branching en 63.4 13 0.00028 47.7 6.5 55 44-98 771-835 (1224)
92 TIGR02401 trehalose_TreY malto 63.3 14 0.00031 45.4 6.6 63 38-100 15-87 (825)
93 PLN00196 alpha-amylase; Provis 63.2 16 0.00034 41.8 6.6 57 42-98 47-112 (428)
94 PF08531 Bac_rhamnosid_N: Alph 63.0 9 0.0002 38.0 4.1 57 572-630 7-66 (172)
95 PRK09856 fructoselysine 3-epim 62.7 38 0.00082 35.6 9.0 52 39-95 13-64 (275)
96 cd02742 GH20_hexosaminidase Be 62.7 12 0.00025 40.7 5.2 59 37-98 14-92 (303)
97 PRK13210 putative L-xylulose 5 61.3 12 0.00025 39.6 4.8 54 39-95 16-69 (284)
98 PRK14511 maltooligosyl trehalo 60.4 18 0.00038 44.9 6.6 62 37-101 18-92 (879)
99 cd06603 GH31_GANC_GANAB_alpha 60.2 16 0.00035 40.3 5.8 72 31-103 13-89 (339)
100 PRK14510 putative bifunctional 60.1 13 0.00028 48.1 5.7 56 43-98 191-267 (1221)
101 PF01791 DeoC: DeoC/LacD famil 59.7 3.9 8.4E-05 42.6 0.8 54 42-98 79-132 (236)
102 PF03659 Glyco_hydro_71: Glyco 59.0 23 0.00051 39.9 6.9 53 37-98 15-67 (386)
103 PRK14507 putative bifunctional 58.9 18 0.00039 47.9 6.6 61 37-100 756-829 (1693)
104 COG1306 Uncharacterized conser 58.5 19 0.00041 39.0 5.6 59 37-98 75-144 (400)
105 PRK08673 3-deoxy-7-phosphohept 57.5 36 0.00078 37.7 7.9 82 8-98 80-164 (335)
106 cd06592 GH31_glucosidase_KIAA1 57.3 26 0.00056 38.0 6.8 68 34-104 25-96 (303)
107 cd06600 GH31_MGAM-like This fa 57.3 19 0.00042 39.3 5.8 72 31-103 13-89 (317)
108 KOG2024 Beta-Glucuronidase GUS 55.7 17 0.00037 38.6 4.7 58 398-455 70-135 (297)
109 cd06599 GH31_glycosidase_Aec37 55.5 27 0.00059 38.1 6.6 65 39-103 29-98 (317)
110 PRK03705 glycogen debranching 55.4 19 0.00041 43.5 5.7 55 44-98 184-262 (658)
111 TIGR03234 OH-pyruv-isom hydrox 55.0 22 0.00049 37.0 5.7 43 40-96 15-57 (254)
112 cd06604 GH31_glucosidase_II_Ma 54.3 24 0.00053 38.8 6.0 72 31-103 13-89 (339)
113 PRK13398 3-deoxy-7-phosphohept 54.1 60 0.0013 34.8 8.7 82 8-98 14-98 (266)
114 PF02679 ComA: (2R)-phospho-3- 53.9 21 0.00046 37.7 5.1 52 38-99 83-134 (244)
115 TIGR03849 arch_ComA phosphosul 52.4 27 0.00058 36.8 5.5 51 39-99 71-121 (237)
116 PF01055 Glyco_hydro_31: Glyco 52.2 22 0.00047 40.5 5.4 66 37-103 41-108 (441)
117 cd06601 GH31_lyase_GLase GLase 50.9 33 0.00072 37.9 6.3 72 31-103 13-89 (332)
118 TIGR02102 pullulan_Gpos pullul 50.7 25 0.00055 44.8 6.0 21 78-98 555-575 (1111)
119 COG0296 GlgB 1,4-alpha-glucan 49.8 30 0.00065 41.4 6.0 52 42-97 168-233 (628)
120 smart00812 Alpha_L_fucos Alpha 48.6 4.5E+02 0.0097 29.7 21.0 243 31-318 76-339 (384)
121 COG1649 Uncharacterized protei 48.4 33 0.00072 39.0 5.9 79 37-117 62-157 (418)
122 TIGR02100 glgX_debranch glycog 48.1 27 0.00058 42.5 5.5 55 44-98 189-265 (688)
123 KOG0718 Molecular chaperone (D 47.5 25 0.00055 40.1 4.7 17 712-728 504-520 (546)
124 COG0366 AmyA Glycosidases [Car 47.3 24 0.00051 40.3 4.7 56 43-98 33-97 (505)
125 cd06416 GH25_Lys1-like Lys-1 i 46.1 44 0.00095 33.7 5.9 87 29-118 56-157 (196)
126 PRK01060 endonuclease IV; Prov 45.9 50 0.0011 34.9 6.6 50 41-94 14-63 (281)
127 TIGR02455 TreS_stutzeri trehal 45.3 47 0.001 39.8 6.7 75 37-115 76-175 (688)
128 TIGR02631 xylA_Arthro xylose i 45.1 49 0.0011 37.3 6.6 52 38-96 31-86 (382)
129 TIGR00677 fadh2_euk methylenet 44.0 47 0.001 35.8 6.0 80 25-117 130-222 (281)
130 KOG0259 Tyrosine aminotransfer 44.0 33 0.00071 38.5 4.8 64 30-97 173-238 (447)
131 KOG2230 Predicted beta-mannosi 43.6 33 0.00071 40.1 4.9 67 15-95 328-399 (867)
132 PF14587 Glyco_hydr_30_2: O-Gl 43.3 1E+02 0.0023 34.7 8.7 132 49-189 57-227 (384)
133 PLN02784 alpha-amylase 43.2 49 0.0011 41.0 6.6 56 42-98 524-588 (894)
134 cd06597 GH31_transferase_CtsY 42.6 52 0.0011 36.4 6.3 73 31-103 13-110 (340)
135 TIGR00433 bioB biotin syntheta 42.3 39 0.00084 36.1 5.1 53 42-97 123-177 (296)
136 PF01229 Glyco_hydro_39: Glyco 42.2 27 0.00059 40.5 4.2 69 28-99 28-105 (486)
137 cd06563 GH20_chitobiase-like T 41.8 35 0.00077 37.9 4.9 59 37-98 16-106 (357)
138 PF02228 Gag_p19: Major core p 40.3 12 0.00026 32.4 0.6 36 38-90 21-56 (92)
139 PF02065 Melibiase: Melibiase; 40.0 74 0.0016 36.1 7.0 89 32-120 51-148 (394)
140 PRK09989 hypothetical protein; 39.7 56 0.0012 34.2 5.8 43 40-96 16-58 (258)
141 cd06565 GH20_GcnA-like Glycosy 38.4 58 0.0013 35.3 5.8 59 37-98 15-80 (301)
142 COG2360 Aat Leu/Phe-tRNA-prote 37.7 77 0.0017 32.7 6.0 98 69-173 74-205 (221)
143 cd00311 TIM Triosephosphate is 37.3 65 0.0014 34.0 5.7 49 45-99 77-125 (242)
144 PLN03059 beta-galactosidase; P 36.1 1.3E+02 0.0029 37.3 8.7 68 553-628 469-545 (840)
145 COG3589 Uncharacterized conser 35.8 64 0.0014 35.6 5.4 72 27-105 4-76 (360)
146 PRK09997 hydroxypyruvate isome 35.7 68 0.0015 33.5 5.6 42 41-96 17-58 (258)
147 PRK12677 xylose isomerase; Pro 35.6 1.1E+02 0.0023 34.7 7.4 54 40-99 32-89 (384)
148 PF14307 Glyco_tran_WbsX: Glyc 35.5 2.6E+02 0.0056 31.0 10.4 125 36-186 55-195 (345)
149 cd00019 AP2Ec AP endonuclease 35.4 87 0.0019 33.1 6.4 55 39-97 10-65 (279)
150 PRK00042 tpiA triosephosphate 35.4 68 0.0015 34.1 5.5 49 45-99 79-127 (250)
151 cd06415 GH25_Cpl1-like Cpl-1 l 35.3 1.5E+02 0.0032 29.9 7.8 101 18-120 18-157 (196)
152 PF01261 AP_endonuc_2: Xylose 35.3 36 0.00077 33.6 3.3 63 38-101 70-135 (213)
153 cd04882 ACT_Bt0572_2 C-termina 35.2 76 0.0017 25.1 4.7 55 38-94 10-64 (65)
154 PRK12858 tagatose 1,6-diphosph 35.0 46 0.001 37.0 4.3 62 35-98 102-163 (340)
155 KOG3833 Uncharacterized conser 34.9 40 0.00086 36.8 3.6 53 40-98 444-499 (505)
156 PRK13209 L-xylulose 5-phosphat 34.8 56 0.0012 34.5 4.9 53 40-95 22-74 (283)
157 PRK12331 oxaloacetate decarbox 34.1 92 0.002 35.9 6.7 56 31-98 88-143 (448)
158 cd06562 GH20_HexA_HexB-like Be 33.9 57 0.0012 36.2 4.9 62 37-98 16-90 (348)
159 TIGR02103 pullul_strch alpha-1 33.5 66 0.0014 40.3 5.7 21 78-98 404-424 (898)
160 PRK09856 fructoselysine 3-epim 33.2 48 0.001 34.8 4.0 55 40-98 91-149 (275)
161 cd03789 GT1_LPS_heptosyltransf 32.9 54 0.0012 34.5 4.4 79 23-104 123-213 (279)
162 TIGR00419 tim triosephosphate 32.8 87 0.0019 32.3 5.6 44 45-98 74-117 (205)
163 cd01299 Met_dep_hydrolase_A Me 32.3 83 0.0018 34.1 5.8 61 37-98 118-180 (342)
164 PLN02877 alpha-amylase/limit d 32.1 79 0.0017 39.8 6.1 21 78-98 466-486 (970)
165 PF01261 AP_endonuc_2: Xylose 31.9 28 0.00062 34.3 1.9 44 45-95 1-44 (213)
166 PF04914 DltD_C: DltD C-termin 31.8 41 0.0009 32.1 2.9 28 78-106 36-63 (130)
167 PLN02389 biotin synthase 31.6 63 0.0014 36.4 4.8 52 41-95 177-230 (379)
168 TIGR01698 PUNP purine nucleoti 31.5 67 0.0014 33.9 4.6 40 18-57 47-87 (237)
169 PLN02763 hydrolase, hydrolyzin 30.8 1.2E+02 0.0027 38.3 7.4 73 31-104 190-267 (978)
170 PRK15492 triosephosphate isome 30.1 1E+02 0.0022 33.0 5.8 49 45-99 87-135 (260)
171 PRK10658 putative alpha-glucos 29.8 1.2E+02 0.0026 36.8 7.0 65 39-103 283-350 (665)
172 PRK07094 biotin synthase; Prov 29.7 48 0.001 36.0 3.4 50 42-94 129-181 (323)
173 PF00728 Glyco_hydro_20: Glyco 29.6 84 0.0018 34.3 5.3 62 37-98 16-93 (351)
174 PF14307 Glyco_tran_WbsX: Glyc 29.4 96 0.0021 34.3 5.7 44 13-59 150-195 (345)
175 PF01075 Glyco_transf_9: Glyco 29.4 36 0.00078 35.0 2.2 75 23-100 107-194 (247)
176 PRK09432 metF 5,10-methylenete 29.1 70 0.0015 34.8 4.5 61 44-117 168-237 (296)
177 COG1891 Uncharacterized protei 29.1 18 0.0004 36.2 -0.0 64 24-97 116-186 (235)
178 KOG1065 Maltase glucoamylase a 29.1 98 0.0021 38.0 6.0 69 31-104 300-377 (805)
179 PF07691 PA14: PA14 domain; I 28.9 2.1E+02 0.0046 26.5 7.3 70 414-485 47-122 (145)
180 COG1523 PulA Type II secretory 28.1 89 0.0019 38.1 5.4 55 44-98 205-285 (697)
181 PRK13210 putative L-xylulose 5 28.1 75 0.0016 33.5 4.4 59 39-98 94-153 (284)
182 cd06594 GH31_glucosidase_YihQ 27.8 1.8E+02 0.0039 31.8 7.4 67 37-103 21-96 (317)
183 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.8 1.4E+02 0.0029 32.1 6.3 50 36-97 88-137 (275)
184 PF13380 CoA_binding_2: CoA bi 27.6 91 0.002 28.8 4.4 43 37-95 64-106 (116)
185 PRK09997 hydroxypyruvate isome 27.3 72 0.0016 33.4 4.1 59 39-98 85-144 (258)
186 PRK10422 lipopolysaccharide co 27.3 1E+02 0.0022 33.8 5.5 72 26-100 188-273 (352)
187 COG2100 Predicted Fe-S oxidore 26.6 3.6E+02 0.0079 29.9 9.1 112 42-186 204-335 (414)
188 PF02606 LpxK: Tetraacyldisacc 26.3 1.2E+02 0.0027 33.4 5.8 63 18-98 224-286 (326)
189 PF12876 Cellulase-like: Sugar 26.2 88 0.0019 27.3 3.8 48 139-186 6-62 (88)
190 PRK05265 pyridoxine 5'-phospha 26.2 73 0.0016 33.6 3.8 48 39-104 113-161 (239)
191 TIGR03551 F420_cofH 7,8-dideme 26.0 54 0.0012 36.2 3.0 49 42-94 141-195 (343)
192 COG3684 LacD Tagatose-1,6-bisp 26.0 55 0.0012 34.8 2.8 52 44-98 116-167 (306)
193 cd06568 GH20_SpHex_like A subg 25.7 1.5E+02 0.0032 32.8 6.3 62 37-98 16-95 (329)
194 cd06525 GH25_Lyc-like Lyc mura 25.7 45 0.00097 33.3 2.1 97 21-119 21-148 (184)
195 PRK14040 oxaloacetate decarbox 25.3 1.1E+02 0.0025 36.5 5.6 53 31-95 89-141 (593)
196 cd08560 GDPD_EcGlpQ_like_1 Gly 25.3 1E+02 0.0022 34.5 5.0 53 40-98 246-298 (356)
197 KOG3625 Alpha amylase [Carbohy 25.3 58 0.0013 40.3 3.1 77 37-122 140-236 (1521)
198 cd06564 GH20_DspB_LnbB-like Gl 25.2 1.6E+02 0.0035 32.3 6.5 59 37-98 15-102 (326)
199 PRK10569 NAD(P)H-dependent FMN 25.1 1.2E+02 0.0025 30.8 5.0 84 23-117 2-87 (191)
200 PLN02561 triosephosphate isome 25.1 1.3E+02 0.0029 32.0 5.6 49 45-99 81-129 (253)
201 PRK14567 triosephosphate isome 25.0 1.4E+02 0.003 31.8 5.7 49 45-99 78-126 (253)
202 TIGR03700 mena_SCO4494 putativ 24.9 55 0.0012 36.3 2.8 52 41-95 149-205 (351)
203 PRK14566 triosephosphate isome 24.8 1.4E+02 0.003 32.0 5.6 49 45-99 88-136 (260)
204 KOG0470 1,4-alpha-glucan branc 24.7 81 0.0018 38.2 4.2 57 42-98 258-331 (757)
205 cd07944 DRE_TIM_HOA_like 4-hyd 24.6 1.2E+02 0.0026 32.3 5.2 45 42-98 85-129 (266)
206 KOG3984 Purine nucleoside phos 24.3 1.3E+02 0.0029 31.6 5.2 83 18-103 72-194 (286)
207 TIGR00676 fadh2 5,10-methylene 24.3 1.6E+02 0.0035 31.4 6.2 81 24-117 125-218 (272)
208 PRK08599 coproporphyrinogen II 24.2 64 0.0014 36.0 3.2 59 28-93 90-151 (377)
209 smart00481 POLIIIAc DNA polyme 24.2 1.9E+02 0.0041 23.5 5.3 45 40-97 16-60 (67)
210 TIGR01210 conserved hypothetic 24.1 1.5E+02 0.0032 32.4 5.9 63 27-97 106-174 (313)
211 PTZ00333 triosephosphate isome 23.6 1.5E+02 0.0033 31.5 5.7 49 45-99 82-130 (255)
212 PRK14565 triosephosphate isome 23.5 1.5E+02 0.0032 31.3 5.5 49 45-99 78-126 (237)
213 PLN02429 triosephosphate isome 23.4 1.4E+02 0.0031 32.8 5.5 49 45-99 140-188 (315)
214 PRK09739 hypothetical protein; 23.2 1.6E+02 0.0035 29.6 5.6 86 22-115 4-98 (199)
215 PRK10964 ADP-heptose:LPS hepto 23.0 1.2E+02 0.0025 32.8 4.9 77 21-100 177-264 (322)
216 TIGR02201 heptsyl_trn_III lipo 23.0 1.2E+02 0.0026 33.0 5.0 78 23-100 182-271 (344)
217 COG0149 TpiA Triosephosphate i 22.8 1.6E+02 0.0035 31.4 5.6 49 45-99 81-129 (251)
218 cd06412 GH25_CH-type CH-type ( 22.8 3.9E+02 0.0085 26.9 8.3 42 79-120 115-162 (199)
219 cd04883 ACT_AcuB C-terminal AC 22.6 2.8E+02 0.0061 22.4 6.1 55 39-95 13-69 (72)
220 smart00518 AP2Ec AP endonuclea 22.3 1.1E+02 0.0025 32.0 4.5 74 24-99 27-106 (273)
221 COG2884 FtsE Predicted ATPase 22.2 70 0.0015 32.9 2.7 113 578-705 54-194 (223)
222 PRK13125 trpA tryptophan synth 21.8 1.7E+02 0.0037 30.6 5.7 58 27-99 79-137 (244)
223 PRK08195 4-hyroxy-2-oxovalerat 21.8 1.7E+02 0.0037 32.4 5.9 44 43-98 92-135 (337)
224 cd06418 GH25_BacA-like BacA is 21.8 1.3E+02 0.0028 31.1 4.6 53 37-92 50-103 (212)
225 cd04886 ACT_ThrD-II-like C-ter 21.6 4E+02 0.0087 20.9 7.2 58 38-95 9-72 (73)
226 PRK08645 bifunctional homocyst 21.6 1.5E+02 0.0033 35.6 5.8 85 20-117 459-551 (612)
227 PRK12595 bifunctional 3-deoxy- 21.5 3.5E+02 0.0076 30.3 8.3 75 17-98 112-189 (360)
228 cd07944 DRE_TIM_HOA_like 4-hyd 21.5 1.4E+02 0.0031 31.7 5.0 139 33-190 14-161 (266)
229 PRK14582 pgaB outer membrane N 21.4 1.3E+02 0.0027 36.6 5.0 56 39-102 334-405 (671)
230 PRK13396 3-deoxy-7-phosphohept 21.0 5E+02 0.011 29.1 9.2 75 17-98 94-172 (352)
231 KOG3698 Hyaluronoglucosaminida 21.0 1.4E+02 0.0031 35.1 5.0 70 19-98 11-94 (891)
232 TIGR03217 4OH_2_O_val_ald 4-hy 20.8 1.8E+02 0.004 32.1 5.8 45 42-98 90-134 (333)
233 PRK02412 aroD 3-dehydroquinate 20.7 2.4E+02 0.0052 29.8 6.5 34 28-61 139-174 (253)
234 KOG0626 Beta-glucosidase, lact 20.4 1.5E+02 0.0033 34.7 5.2 59 40-98 92-153 (524)
235 PF03170 BcsB: Bacterial cellu 20.3 2.7E+02 0.0058 33.2 7.6 74 579-661 361-439 (605)
236 TIGR03128 RuMP_HxlA 3-hexulose 20.3 2.2E+02 0.0047 28.6 5.9 51 30-97 58-108 (206)
237 TIGR03234 OH-pyruv-isom hydrox 20.2 1.1E+02 0.0025 31.6 3.9 59 39-98 84-143 (254)
238 KOG0622 Ornithine decarboxylas 20.1 1.4E+02 0.003 34.0 4.6 67 37-113 191-258 (448)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.8e-194 Score=1664.49 Aligned_cols=714 Identities=52% Similarity=0.949 Sum_probs=648.6
Q ss_pred ceeEEEeCCeEEECCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHH
Q 041957 7 GGEVTYDGRSLIINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKE 86 (734)
Q Consensus 7 ~~~v~~d~~~~~~dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~ 86 (734)
..+|+||+++|+|||+|++|+||||||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++
T Consensus 27 ~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~l 106 (840)
T PLN03059 27 SASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKV 106 (840)
T ss_pred eeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCChhHH------------HH--HHHHhhcCCCEEEEccccc
Q 041957 87 IQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK------------KM--KRLYASQGGPIILSQIENE 152 (734)
Q Consensus 87 a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~------------~~--~~~~~~~ggpiI~~QiENE 152 (734)
|+|+||+|||||||||||||++||+|.||+++|+|++||+|++|+ ++ +++++++||||||+|||||
T Consensus 107 a~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENE 186 (840)
T PLN03059 107 VQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENE 186 (840)
T ss_pred HHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccc
Confidence 999999999999999999999999999999999999999999998 23 2567899999999999999
Q ss_pred ccceecccCCCChHHHHHHHHHHHhcCCccceEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCceeeeccccccccc
Q 041957 153 YQMVENAFGERGPPYIKWAAEMAVGLQTGVPWVMCKQDDAPDPVINACNGRKCGETFKGPNSPNKPSIWTENWTSRYQAY 232 (734)
Q Consensus 153 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~P~~~~E~~~Gwf~~w 232 (734)
||++...++.+|++||+||+++++++|++|||+||++.++++++++|||+.+| +.|. ..++.+|+||+|||+|||++|
T Consensus 187 YGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~-~~f~-~~~~~~P~m~tE~w~GWf~~w 264 (840)
T PLN03059 187 YGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYC-ENFK-PNKDYKPKMWTEAWTGWYTEF 264 (840)
T ss_pred ccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchh-hhcc-cCCCCCCcEEeccCchhHhhc
Confidence 99987667778999999999999999999999999998888899999999888 7777 566778999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCeeeeeeEeecccCCCCCCCC-CcccccCCCCCCCcCCCCCCchHHHHHHHHHHHHh
Q 041957 233 GEDPIGRTADDIAFHVALWVARNGSFVNYYMYHGGTNFGREASA-FVTASYYDDAPLDEYGMINQPKWGHLKELHAAIKL 311 (734)
Q Consensus 233 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~TSYDY~Api~E~G~~~tpky~~lr~l~~~l~~ 311 (734)
|+++++|+++|++.+++++|++|+|++||||||||||||||+|+ +++|||||||||+|+|++++|||.+||++|++++.
T Consensus 265 G~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~ 344 (840)
T PLN03059 265 GGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKL 344 (840)
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999998899999999999999998 59999999999999999866899999999999998
Q ss_pred hcccccCCCCCCcCCCCCCceeeeeecCCchhhhhhhhcccC-CcceEEEeCCceeeeccceecccCC------------
Q 041957 312 CSNTLLLGKAMTPLQLGPKQEAYLFAENSSEECASAFLVNKD-KQNVDVVFQNSSYKLLANSISILPD------------ 378 (734)
Q Consensus 312 ~~~~~~~~~~p~~~~~~~~~~~~~y~~~~~~~~~~~fl~n~~-~~~~~v~f~~~~~~lp~~sv~il~~------------ 378 (734)
+++.|+..+ |....+++.+++++|.... .|+ +|+.|.+ ....+|.|++++|.+|+||||||||
T Consensus 345 ~~~~l~~~~-p~~~~lg~~~ea~~y~~~~--~ca-aFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~ 420 (840)
T PLN03059 345 CEPALVSVD-PTVTSLGSNQEAHVFKSKS--ACA-AFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLG 420 (840)
T ss_pred cCccccCCC-CceeccCCceeEEEccCcc--chh-hheeccCCCCceeEEECCcccccCccceeecccccceeeeccccc
Confidence 887777665 6667788899999998655 588 9999988 7789999999999999999999999
Q ss_pred --------------ccccccCCC-cCCCCCCCCCccccccccCCCCCCCceEEEEEEeCCCCCC------CCceeEeCCc
Q 041957 379 --------------YQWEEFKEP-IPNFEDTSLKSDTLLEHTDTTKDTSDYLWYSFSFQPEPSD------TRAQLSVHSL 437 (734)
Q Consensus 379 --------------~~w~~~~e~-~~~~~~~~~~~p~~mEql~~t~d~~GyllY~t~i~~~~~~------~~~~L~v~~~ 437 (734)
+.|+++.|+ ++.+.+.+++...++||+++|+|.+||+||+|+|....++ ...+|+|.++
T Consensus 421 ~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~ 500 (840)
T PLN03059 421 AQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSA 500 (840)
T ss_pred cccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEccc
Confidence 235555565 3333344666677889999999999999999999875432 3467999999
Q ss_pred ceEEEEEECCEEEEEEeccccCceeEEEeeeecCCCccEEEEEEecCCccccccccCCccccceE-EEEcc-cccccccc
Q 041957 438 GHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSLSNGINNVSLLSVMVGLPDSGAYLERKRYGPVA-VSIQN-KEGSMNFT 515 (734)
Q Consensus 438 ~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N~G~~~~~~~kGI~g-v~l~g-~~~~~dl~ 515 (734)
+|++||||||+++|++.++.....++++.+++++.|.|+|+||||||||+|||++|++++|||+| |+|++ +.++.||+
T Consensus 501 ~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls 580 (840)
T PLN03059 501 GHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLS 580 (840)
T ss_pred CcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecc
Confidence 99999999999999999877666788887888899999999999999999999999989999999 99988 55667899
Q ss_pred cCceeEeecCCcccccccccCCccccccccCCCCCCCCCceEEEEEEEecCCCCceEEeeCCCceEEEEECCeeceeccc
Q 041957 516 NYKWGQKVGLLGENLQIYTDEGSKIIQWSKLSSSDISPPLTWYKTVFDATGEDEYVALNLNGMRKGEARVNGRSIGRYWP 595 (734)
Q Consensus 516 ~~~W~~~l~L~~e~~~~~~~~~~~~~~w~~~~~~~~~~~~~~Yk~~F~~~~~~dp~~Ld~~g~gKG~v~VNG~nlGRYW~ 595 (734)
+|.|.|+++|+||.++++.++....++|.+.+..+...+|+|||++|++|++.|||||||+|||||+|||||+||||||+
T Consensus 581 ~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~ 660 (840)
T PLN03059 581 GWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWP 660 (840)
T ss_pred cCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccc
Confidence 99999999999999999887655678998765545556799999999999999999999999999999999999999997
Q ss_pred cccCC--------------------CCCCceeeeccCCCccCCCCcEEEEEEecCCCCcceeeeee-----cCc----e-
Q 041957 596 SLITP--------------------RGEPSQISYNIPRSFLKPTGNLLVLLEEEGGDPLSITLEKL-----EAK----V- 645 (734)
Q Consensus 596 ~~~~~--------------------~gGPQqtlYhVP~~~Lk~g~N~ivifEe~g~~p~~I~~~t~-----Ce~----~- 645 (734)
..... =|||||||||||++|||+|+|+||||||+|++|..|+|.++ |.+ .
T Consensus 661 ~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~p 740 (840)
T PLN03059 661 AYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQP 740 (840)
T ss_pred cccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccCC
Confidence 52111 17999999999999999999999999999999999999998 876 3
Q ss_pred -------------------EEEEcCCCCeEEEEeeeccCCCCCCCCCCCcccccccCCChHHHHHHHcCCCCccEEeeCC
Q 041957 646 -------------------VHLQCAPTWYITKILFASYGTPFGGCGRDGHAIGYCDSPNSKFAAEKACLGKRSCLIPASD 706 (734)
Q Consensus 646 -------------------~~L~C~~g~~I~~I~~A~YGr~~~~C~~~~~~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~ 706 (734)
++|+||.|++|++|.+|+||||.++|++ +++++|++++|+++|+++|+||++|+|+|++
T Consensus 741 ~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~--~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn 818 (840)
T PLN03059 741 ALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGS--FREGSCHAHKSYDAFERNCIGKQSCSVTVAP 818 (840)
T ss_pred ccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCC--CCCCCEeCCcHHHHHHHHCCCCCceEEEecc
Confidence 8999999999977999999999999998 7899999999999999999999999999999
Q ss_pred CCccCCCCCCCceEEEEEEEEe
Q 041957 707 QFFDGDPCPSKKKSLIVEAHCG 728 (734)
Q Consensus 707 ~~Fg~DPC~gt~KyL~V~y~C~ 728 (734)
.+||+|||+||+|||+|+|+|.
T Consensus 819 ~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 819 EVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred ceecCCCCCCceeEEEEEEEeC
Confidence 9997799999999999999994
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-145 Score=1207.74 Aligned_cols=607 Identities=52% Similarity=0.920 Sum_probs=544.9
Q ss_pred ceeEEEeCCeEEECCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHH
Q 041957 7 GGEVTYDGRSLIINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKE 86 (734)
Q Consensus 7 ~~~v~~d~~~~~~dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~ 86 (734)
.+.|++|+++|++||+|++++||+|||+|++|++|+++|+|||++|+|+|+||||||.|||+||+|||+|+.||.+||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCChhHH------------HHHHHHhhcCCCEEEEccccccc
Q 041957 87 IQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK------------KMKRLYASQGGPIILSQIENEYQ 154 (734)
Q Consensus 87 a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~------------~~~~~~~~~ggpiI~~QiENEyg 154 (734)
|+++||+||||+||||||||++||+|.||...|++.+||+|++|+ ++.+|++++||||||+|||||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 999999999999999999999999999998899999999999997 34468899999999999999999
Q ss_pred ceecccCCCChHHHHHHHHHHHhcCCccceEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCceeeecccccccccCC
Q 041957 155 MVENAFGERGPPYIKWAAEMAVGLQTGVPWVMCKQDDAPDPVINACNGRKCGETFKGPNSPNKPSIWTENWTSRYQAYGE 234 (734)
Q Consensus 155 ~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~P~~~~E~~~Gwf~~wG~ 234 (734)
.+...|++..++|+.|-+.++...+.+|||+||.+.++++.++++||+++|.+.|..+++|++|+||||+|+|||++||+
T Consensus 177 ~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~wGg 256 (649)
T KOG0496|consen 177 NYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHWGG 256 (649)
T ss_pred HHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhhCC
Confidence 88777777888999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCeeeeeeEeecccCCCCCCCCCcccccCCCCCCCcCCCCCCchHHHHHHHHHHHHhhcc
Q 041957 235 DPIGRTADDIAFHVALWVARNGSFVNYYMYHGGTNFGREASAFVTASYYDDAPLDEYGMINQPKWGHLKELHAAIKLCSN 314 (734)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDY~Api~E~G~~~tpky~~lr~l~~~l~~~~~ 314 (734)
+++.|++++++..+++++++|+|++||||||||||||++||.+.+|||||||||+ |..++|||.|+|.+|..+..+++
T Consensus 257 ~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep 334 (649)
T KOG0496|consen 257 PHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEP 334 (649)
T ss_pred CCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999998887
Q ss_pred cccCCCCCCcCCCCCCceeeeeecCCchhhhhhhhcccC-CcceEEEeCCceeeeccceecccCCccccccC--CCcCCC
Q 041957 315 TLLLGKAMTPLQLGPKQEAYLFAENSSEECASAFLVNKD-KQNVDVVFQNSSYKLLANSISILPDYQWEEFK--EPIPNF 391 (734)
Q Consensus 315 ~~~~~~~p~~~~~~~~~~~~~y~~~~~~~~~~~fl~n~~-~~~~~v~f~~~~~~lp~~sv~il~~~~w~~~~--e~~~~~ 391 (734)
.+..++ |.... |....+ .|+ .|+.|++ ..+..+.|++..|.+|+|+++||++..=..+. ++...+
T Consensus 335 ~lv~gd-~~~~k---------yg~~~~-~C~-~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~~ 402 (649)
T KOG0496|consen 335 ALVAGD-ITTAK---------YGNLRE-ACA-AFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQW 402 (649)
T ss_pred cccccC-ccccc---------ccchhh-HHH-HHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccccc
Confidence 766655 33222 222222 587 9999988 77889999999999999999999984211111 111111
Q ss_pred CCCCCCccccccccCCCCCCCceEEEEEEeCCCCCCCCceeEeC-CcceEEEEEECCEEEEEEeccccCceeEEEeeeec
Q 041957 392 EDTSLKSDTLLEHTDTTKDTSDYLWYSFSFQPEPSDTRAQLSVH-SLGHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSL 470 (734)
Q Consensus 392 ~~~~~~~p~~mEql~~t~d~~GyllY~t~i~~~~~~~~~~L~v~-~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~l 470 (734)
..+..|.++|..++ .+||++|++.++.+..+ ...|+|. +++|++||||||+++|+++++.....+.+..++.|
T Consensus 403 --~~~~e~~~~~~~~~---~~~~ll~~~~~t~d~sd-~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l 476 (649)
T KOG0496|consen 403 --ISFTEPIPSEAVGQ---SFGGLLEQTNLTKDKSD-TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGL 476 (649)
T ss_pred --ccccCCCccccccC---cceEEEEEEeeccccCC-CceEeecccccceEEEEECCEEeeeEeccccceeEEeeccccc
Confidence 12344677888876 58899999999865432 3468888 99999999999999999998776666777778889
Q ss_pred CCCccEEEEEEecCCccccccccCCccccceE-EEEcccccccccccCceeEeecCCcccccccccCCccccccccCCCC
Q 041957 471 SNGINNVSLLSVMVGLPDSGAYLERKRYGPVA-VSIQNKEGSMNFTNYKWGQKVGLLGENLQIYTDEGSKIIQWSKLSSS 549 (734)
Q Consensus 471 ~~g~~~L~ILven~Gr~N~G~~~~~~~kGI~g-v~l~g~~~~~dl~~~~W~~~l~L~~e~~~~~~~~~~~~~~w~~~~~~ 549 (734)
..|.|+|+|||||+||+||| +++++.|||+| |+|+|. +|++++.|.|+++|.+|...+++......++|+.....
T Consensus 477 ~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~---~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~ 552 (649)
T KOG0496|consen 477 KAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL---IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNT 552 (649)
T ss_pred ccCcceEEEEEEecCCCCcC-cccccccccccceEEeee---eccceeecceecccccchhhccccccccccceeeccCc
Confidence 99999999999999999999 88899999999 999997 46888899999999999999999888888999987766
Q ss_pred CCCCCceEEEEEEEecCCCCceEEeeCCCceEEEEECCeeceeccccccCCCCCCceeeeccCCCccCCCCcEEEEEEec
Q 041957 550 DISPPLTWYKTVFDATGEDEYVALNLNGMRKGEARVNGRSIGRYWPSLITPRGEPSQISYNIPRSFLKPTGNLLVLLEEE 629 (734)
Q Consensus 550 ~~~~~~~~Yk~~F~~~~~~dp~~Ld~~g~gKG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~~Lk~g~N~ivifEe~ 629 (734)
+..+|.+||+ +|++|++.+||+|||.|||||+|||||+|||||||++ |||+++| ||++|||++.|+||||||+
T Consensus 553 ~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~-----G~Q~~yh-vPr~~Lk~~~N~lvvfEee 625 (649)
T KOG0496|consen 553 ATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF-----GPQRTYH-VPRSWLKPSGNLLVVFEEE 625 (649)
T ss_pred ccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC-----CCceEEE-CcHHHhCcCCceEEEEEec
Confidence 5557889999 9999999999999999999999999999999999999 9977766 9999999999999999999
Q ss_pred CCCCcceeeeeecCc
Q 041957 630 GGDPLSITLEKLEAK 644 (734)
Q Consensus 630 g~~p~~I~~~t~Ce~ 644 (734)
+++|..|+|+++|..
T Consensus 626 ~~~p~~i~~~~~~~~ 640 (649)
T KOG0496|consen 626 GGDPNGISFVTRPVL 640 (649)
T ss_pred cCCCccceEEEeEee
Confidence 999999999999864
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=9.9e-87 Score=716.98 Aligned_cols=286 Identities=40% Similarity=0.710 Sum_probs=216.3
Q ss_pred eEEECCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 16 SLIINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 16 ~~~~dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
+|+|||||++|+||||||+|+||++|+|+|+||||+|+|||+|||+||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCccccccccCCCCCcccccCCCccccCCChhHH------------HHHHHHhhcCCCEEEEcccccccceecccCCC
Q 041957 96 IRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK------------KMKRLYASQGGPIILSQIENEYQMVENAFGER 163 (734)
Q Consensus 96 lr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~------------~~~~~~~~~ggpiI~~QiENEyg~~~~~~~~~ 163 (734)
|||||||||||++||+|.||++++++++||+|+.|+ +++++++++||||||+|||||||.. .+
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~-----~~ 155 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY-----GT 155 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT-----SS
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC-----cc
Confidence 999999999999999999999999999999999998 4567789999999999999999953 37
Q ss_pred ChHHHHHHHHHHHhcCCc-cceEEecCCC--------CCccccccCCCCCCCCC----CC--CCCCCCCCceeeeccccc
Q 041957 164 GPPYIKWAAEMAVGLQTG-VPWVMCKQDD--------APDPVINACNGRKCGET----FK--GPNSPNKPSIWTENWTSR 228 (734)
Q Consensus 164 ~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~~g~~~~~~----~~--~~~~~~~P~~~~E~~~Gw 228 (734)
+++||+.|++++++.|++ +++++++... .++..+.+++++.|.+. |. ...+|++|.|++|||+||
T Consensus 156 ~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~Gw 235 (319)
T PF01301_consen 156 DRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWGGW 235 (319)
T ss_dssp -HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEESS-
T ss_pred cHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecccc
Confidence 999999999999999998 6677766421 12222334445555432 10 134688999999999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhhcCeeeeeeEeecccCCCCCCCCCc-----ccccCCCCCCCcCCCCCCchHHHHH
Q 041957 229 YQAYGEDPIGRTADDIAFHVALWVARNGSFVNYYMYHGGTNFGREASAFV-----TASYYDDAPLDEYGMINQPKWGHLK 303 (734)
Q Consensus 229 f~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~-----~TSYDY~Api~E~G~~~tpky~~lr 303 (734)
|++||++++.+++++++..+++++++|.+ +||||||||||||+++|+.. +|||||+|||+|+|++ +|||++||
T Consensus 236 f~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~lr 313 (319)
T PF01301_consen 236 FDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYELR 313 (319)
T ss_dssp --BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHHH
T ss_pred ccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHHH
Confidence 99999999999999999999999999955 89999999999999999844 4999999999999998 69999999
Q ss_pred HHHHH
Q 041957 304 ELHAA 308 (734)
Q Consensus 304 ~l~~~ 308 (734)
+||++
T Consensus 314 ~l~~~ 318 (319)
T PF01301_consen 314 RLHQK 318 (319)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-38 Score=362.56 Aligned_cols=281 Identities=22% Similarity=0.288 Sum_probs=205.1
Q ss_pred EEEeCCeEEECCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEE-ceeCcccCCcCCeeeecCchhHHHHHHHHH
Q 041957 10 VTYDGRSLIINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQT-YVFWNLHEPQPGKYDFSGRRDLVRFIKEIQ 88 (734)
Q Consensus 10 v~~d~~~~~~dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~-yv~W~~hEp~~G~~df~g~~dl~~fl~~a~ 88 (734)
|++++..+++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.|++|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678899999999999999999999999999999999999999999999 99999999999999999 78888 899999
Q ss_pred HcCCEEEEeeCc-cccccccCCCCCcccccCCCccccC---------CChhHH--------HHHHHHhhcCCCEEEEccc
Q 041957 89 AQGLYASIRIGP-FIQSEWSYGGLPFWLHDVPGITFRC---------DNEPFK--------KMKRLYASQGGPIILSQIE 150 (734)
Q Consensus 89 ~~gl~vilr~GP-yi~aE~~~Gg~P~Wl~~~p~~~~R~---------~~~~y~--------~~~~~~~~~ggpiI~~QiE 150 (734)
+.||+||||||| ..|.+|..+++|+||..++....|. +.+.|+ +++++.+++|++|||||++
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~d 158 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQND 158 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEcc
Confidence 999999999999 9999999999999998766533333 334455 4667779999999999999
Q ss_pred ccccceecccCCCChHHHHHHHHHHHhc-CCccceEEec-CCCCC-ccccccCCCCCCCCCCCC------CCCCCC----
Q 041957 151 NEYQMVENAFGERGPPYIKWAAEMAVGL-QTGVPWVMCK-QDDAP-DPVINACNGRKCGETFKG------PNSPNK---- 217 (734)
Q Consensus 151 NEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~-~~~~~~~~g~~~~~~~~~------~~~~~~---- 217 (734)
||||++.+.+..|.+.|..||++.+-.. -...+|=+.- ..... ...|.+-+.+.. +.+.+ .....+
T Consensus 159 neY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e-~~~~~~~ld~~~f~~e~~~~~ 237 (673)
T COG1874 159 NEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGE-LPLPGLYLDYRRFESEQILEF 237 (673)
T ss_pred CccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccc-cCCccchhhHhhhhhhhhHHH
Confidence 9999965556678899999999987422 1222322111 00000 001111110000 00000 001112
Q ss_pred Cceeeecccccc-cccCCCCCCCC-HHHHHHHHHHHHhhcCeeeeeeEeecccCCC------CCCCC-----------Cc
Q 041957 218 PSIWTENWTSRY-QAYGEDPIGRT-ADDIAFHVALWVARNGSFVNYYMYHGGTNFG------REASA-----------FV 278 (734)
Q Consensus 218 P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~-----------~~ 278 (734)
+....|.+-+|| +.|..+.--.. .+.-...+++.|....+ -||||||+|++|+ +.+++ ..
T Consensus 238 ~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~~P~ 316 (673)
T COG1874 238 VREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQLPS 316 (673)
T ss_pred HHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeeccCCcc
Confidence 555566777888 66655433333 23334455566666655 6999999999999 66554 26
Q ss_pred ccccCCCCCCCcCCCC
Q 041957 279 TASYYDDAPLDEYGMI 294 (734)
Q Consensus 279 ~TSYDY~Api~E~G~~ 294 (734)
.|+|++.+.+.+.|..
T Consensus 317 ~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 317 VVNWALYNKLKRPGAL 332 (673)
T ss_pred hhhhhhccCCCCCccc
Confidence 7999999999999984
No 5
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.84 E-value=7.5e-22 Score=171.13 Aligned_cols=78 Identities=35% Similarity=0.660 Sum_probs=63.6
Q ss_pred EEcCCCCeEEEEeeeccCCCC-CCCCCC-CcccccccCCChHHHHHHHcCCCCccEEeeCCCCccCCCCCCCceEEEEEE
Q 041957 648 LQCAPTWYITKILFASYGTPF-GGCGRD-GHAIGYCDSPNSKFAAEKACLGKRSCLIPASDQFFDGDPCPSKKKSLIVEA 725 (734)
Q Consensus 648 L~C~~g~~I~~I~~A~YGr~~-~~C~~~-~~~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~Fg~DPC~gt~KyL~V~y 725 (734)
|+||.|++|. |.+|+|||++ .+|+.. .....+|++++++++|+++|+||++|.|+|++.+|| ||||+|+|||+|+|
T Consensus 1 L~C~~g~~I~-I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVIS-IDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEEE-EEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEEE-EEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 7999998887 9999999999 589743 456678999999999999999999999999999997 99999999999999
Q ss_pred EE
Q 041957 726 HC 727 (734)
Q Consensus 726 ~C 727 (734)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 6
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.84 E-value=1.9e-21 Score=197.22 Aligned_cols=90 Identities=27% Similarity=0.444 Sum_probs=84.6
Q ss_pred cCc-eEEEEcCCCCeEEEEeeeccCCCC-CCCCCCC--cccccccCCChHHHHHHHcCCCCccEEeeCCCCccCCCCCCC
Q 041957 642 EAK-VVHLQCAPTWYITKILFASYGTPF-GGCGRDG--HAIGYCDSPNSKFAAEKACLGKRSCLIPASDQFFDGDPCPSK 717 (734)
Q Consensus 642 Ce~-~~~L~C~~g~~I~~I~~A~YGr~~-~~C~~~~--~~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~Fg~DPC~gt 717 (734)
||+ .++|+||.|.+|+ |++|+|||.+ ..|..++ ..+.+|..|+|+.++.++|+++++|.|.|..++|+.||||||
T Consensus 41 CdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPgT 119 (265)
T KOG4729|consen 41 CDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPGT 119 (265)
T ss_pred ecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCCc
Confidence 999 9999999999998 9999999988 6898763 566899999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEecCCC
Q 041957 718 KKSLIVEAHCGPISI 732 (734)
Q Consensus 718 ~KyL~V~y~C~~~~~ 732 (734)
+|||+|.|.|+|.++
T Consensus 120 ~KYLev~Y~Cvp~~~ 134 (265)
T KOG4729|consen 120 SKYLEVQYGCVPYAF 134 (265)
T ss_pred hhheEEEeccCcccc
Confidence 999999999999764
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.82 E-value=3.2e-20 Score=205.35 Aligned_cols=259 Identities=19% Similarity=0.262 Sum_probs=149.6
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEE-ceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCC
Q 041957 31 IHYPRSPREMWPSLISKAKEGGLDVIQT-YVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYG 109 (734)
Q Consensus 31 ~hy~r~~~~~W~~~l~k~ka~G~N~v~~-yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~G 109 (734)
++|.++|++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .||++|++|+++||+|||++. ..
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5778899999999999999999999997 56799999999999999 899999999999999999984 66
Q ss_pred CCCccccc-CCCcccc----------------CCChhHH----HHHHHH---hhcCCCEEEEcccccccceecccCCCCh
Q 041957 110 GLPFWLHD-VPGITFR----------------CDNEPFK----KMKRLY---ASQGGPIILSQIENEYQMVENAFGERGP 165 (734)
Q Consensus 110 g~P~Wl~~-~p~~~~R----------------~~~~~y~----~~~~~~---~~~ggpiI~~QiENEyg~~~~~~~~~~~ 165 (734)
..|.||.+ .|++... .++|.|+ ++.+.+ ++++..||+|||+||++...+.+..+.+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~ 150 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQA 150 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHH
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHH
Confidence 79999976 6775321 1345565 222211 5788899999999999864221224677
Q ss_pred HHHHHHHHHHHhc-------CCc-------------cceEEecCCC-----------------------------CCccc
Q 041957 166 PYIKWAAEMAVGL-------QTG-------------VPWVMCKQDD-----------------------------APDPV 196 (734)
Q Consensus 166 ~y~~~l~~~~~~~-------g~~-------------vp~~~~~~~~-----------------------------~~~~~ 196 (734)
+|.+||+++|... |.. .|-.+..... .|+ .
T Consensus 151 ~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~-~ 229 (374)
T PF02449_consen 151 AFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPD-H 229 (374)
T ss_dssp HHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-c
Confidence 8999999988641 111 1211110000 000 0
Q ss_pred cccCC--CC--CCCC--------------CC--------CC-------------CCCCCCCceeeecccccccccCCCCC
Q 041957 197 INACN--GR--KCGE--------------TF--------KG-------------PNSPNKPSIWTENWTSRYQAYGEDPI 237 (734)
Q Consensus 197 ~~~~~--g~--~~~~--------------~~--------~~-------------~~~~~~P~~~~E~~~Gwf~~wG~~~~ 237 (734)
.-+.| +. ...+ .+ .. ...+++|.+++|.++| -..|+....
T Consensus 230 ~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~~~~~~~ 308 (374)
T PF02449_consen 230 PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVNWRPYNR 308 (374)
T ss_dssp EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---SSSSS--
T ss_pred eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCCCccCCC
Confidence 00101 00 0000 00 00 1147899999999998 666766666
Q ss_pred CCCHHHHHHHHHHHHhhcCeeeeeeEeecccCCCCCCCCCcccccCCCCCCCcCCCCCCchHHHHHHHHHHHHh
Q 041957 238 GRTADDIAFHVALWVARNGSFVNYYMYHGGTNFGREASAFVTASYYDDAPLDEYGMINQPKWGHLKELHAAIKL 311 (734)
Q Consensus 238 ~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDY~Api~E~G~~~tpky~~lr~l~~~l~~ 311 (734)
...+..+...+-..++.|+..+.|+-+ ..-.+|.-.. ..+.|+-+|...+++|.+++++.+.|+.
T Consensus 309 ~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 309 PPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREPTRRYREVAQLGRELKK 373 (374)
T ss_dssp ---TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B-HHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCCCcHHHHHHHHHHHHhc
Confidence 666677776666778899998887766 3233342211 2357888893358999999999887753
No 8
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.11 E-value=1.2e-10 Score=107.36 Aligned_cols=69 Identities=33% Similarity=0.679 Sum_probs=52.1
Q ss_pred CCCceEEEEEEEecCCCCceE-Eee--CCCceEEEEECCeeceeccccccCCCCCCceeeeccCCCccCCCCcEEEEE
Q 041957 552 SPPLTWYKTVFDATGEDEYVA-LNL--NGMRKGEARVNGRSIGRYWPSLITPRGEPSQISYNIPRSFLKPTGNLLVLL 626 (734)
Q Consensus 552 ~~~~~~Yk~~F~~~~~~dp~~-Ld~--~g~gKG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~~Lk~g~N~ivif 626 (734)
..+..|||++|.....+..+. |.. ....+.+|||||++|||||+.+ |||++++ ||..+|+.+.|.|+|+
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-----g~q~tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-----GPQTTFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT-----ECCEEEE-E-BTTBTTCEEEEEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC-----CccEEEE-eCceeecCCCEEEEEE
Confidence 457899999996422211233 333 3578999999999999999888 9999999 9999999875665554
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.92 E-value=4.5e-08 Score=105.25 Aligned_cols=144 Identities=20% Similarity=0.269 Sum_probs=95.9
Q ss_pred EEEeCCeEEECCEEeEEEEEeeeCCC------CCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHH
Q 041957 10 VTYDGRSLIINGERKVLFSGSIHYPR------SPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRF 83 (734)
Q Consensus 10 v~~d~~~~~~dg~~~~~~~G~~hy~r------~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~f 83 (734)
|++.++.|+|||||+.+-|...|... ++++.|+.+|++||++|+|+|++ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 67899999999999999999999744 47889999999999999999999 444422 588
Q ss_pred HHHHHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCChhHH-----HHHHH--HhhcCCCEEEEcccccccce
Q 041957 84 IKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK-----KMKRL--YASQGGPIILSQIENEYQMV 156 (734)
Q Consensus 84 l~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~-----~~~~~--~~~~ggpiI~~QiENEyg~~ 156 (734)
+++|.+.||.|+--+. ..+.-.|-... .......++.|. .++.+ ...|+..||||=+-||-.
T Consensus 65 ~~~cD~~GilV~~e~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~-- 133 (298)
T PF02836_consen 65 YDLCDELGILVWQEIP--------LEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESD-- 133 (298)
T ss_dssp HHHHHHHT-EEEEE-S---------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSH--
T ss_pred HHHHhhcCCEEEEecc--------ccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCc--
Confidence 9999999999986652 21121222111 012345666665 22232 256899999999999993
Q ss_pred ecccCCCChHHHHHHHHHHHhcCCccceEEe
Q 041957 157 ENAFGERGPPYIKWAAEMAVGLQTGVPWVMC 187 (734)
Q Consensus 157 ~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 187 (734)
...+++.|.+++++..-+=|....
T Consensus 134 -------~~~~~~~l~~~~k~~DptRpv~~~ 157 (298)
T PF02836_consen 134 -------YREFLKELYDLVKKLDPTRPVTYA 157 (298)
T ss_dssp -------HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred -------cccchhHHHHHHHhcCCCCceeec
Confidence 246788899999987666554433
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.66 E-value=1.6e-07 Score=86.61 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=58.4
Q ss_pred cccccCCCCCCCceEEEEEEeCCCCCCCCce-eEeC-CcceEEEEEECCEEEEEEec-cccCceeEEEeeee-cCCCccE
Q 041957 401 LLEHTDTTKDTSDYLWYSFSFQPEPSDTRAQ-LSVH-SLGHVLHAFVNGVPVGSAHG-SYKNTSFTLQTDFS-LSNGINN 476 (734)
Q Consensus 401 ~mEql~~t~d~~GyllY~t~i~~~~~~~~~~-L~v~-~~~D~~~Vfvng~~vG~~~~-~~~~~~~~~~~~~~-l~~g~~~ 476 (734)
+.+..+..++..|++|||++|...+.+.... |.+. +.+++++|||||+++|+... ...+ .+|+++.. |+.+.++
T Consensus 23 ~~l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q--~tf~~p~~il~~~n~v 100 (111)
T PF13364_consen 23 PVLYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQ--TTFSVPAGILKYGNNV 100 (111)
T ss_dssp SSTCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECC--EEEEE-BTTBTTCEEE
T ss_pred ceeccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCCCcc--EEEEeCceeecCCCEE
Confidence 3566666667899999999997533222334 4444 68999999999999999883 2223 44554443 5566789
Q ss_pred EEEEEecCCc
Q 041957 477 VSLLSVMVGL 486 (734)
Q Consensus 477 L~ILven~Gr 486 (734)
|.+|+.+||+
T Consensus 101 ~~vl~~~~g~ 110 (111)
T PF13364_consen 101 LVVLWDNMGH 110 (111)
T ss_dssp EEEEEE-STT
T ss_pred EEEEEeCCCC
Confidence 9999999996
No 11
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.60 E-value=8.6e-07 Score=104.59 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=103.3
Q ss_pred eeEEEeCCeEEECCEEeEEEEEeeeCCC------CCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHH
Q 041957 8 GEVTYDGRSLIINGERKVLFSGSIHYPR------SPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLV 81 (734)
Q Consensus 8 ~~v~~d~~~~~~dg~~~~~~~G~~hy~r------~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~ 81 (734)
.+|++++..|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++. |-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s-----h~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS-----HYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec-----cCCCC-----------H
Confidence 5688899999999999999999888543 467889999999999999999992 44421 4
Q ss_pred HHHHHHHHcCCEEEEeeCccccccccCCCCCcccc-------c-CCCccccCCChhHH-----HHHHHH--hhcCCCEEE
Q 041957 82 RFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLH-------D-VPGITFRCDNEPFK-----KMKRLY--ASQGGPIIL 146 (734)
Q Consensus 82 ~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~-------~-~p~~~~R~~~~~y~-----~~~~~~--~~~ggpiI~ 146 (734)
+|+++|-+.||+|+--.. .-|+..|.. + .+.......+|.++ .++.+. ..|+..|||
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~ 411 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVM 411 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCCceEEE
Confidence 889999999999996652 111222221 1 11111112234443 233332 568999999
Q ss_pred EcccccccceecccCCCChHHHHHHHHHHHhcCCccceEE
Q 041957 147 SQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVPWVM 186 (734)
Q Consensus 147 ~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 186 (734)
|-|-||-.... .....|++.|.+.+++..-+=|...
T Consensus 412 Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~ 447 (604)
T PRK10150 412 WSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTC 447 (604)
T ss_pred EeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEE
Confidence 99999975321 1345677888888888776655443
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.56 E-value=5e-07 Score=95.03 Aligned_cols=155 Identities=17% Similarity=0.242 Sum_probs=102.4
Q ss_pred CCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccC-CcCCe-eeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 20 NGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHE-PQPGK-YDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 20 dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hE-p~~G~-~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
+|+++.+.+-+.|... +..-++.+++||++|+|+|++.|.|...+ |.++. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999322 12778999999999999999999995444 67764 66666679999999999999999987
Q ss_pred eCccccccccCCCCCcccccCCCcc-ccCCChhHH----HHHHHHhhcCCCEEEEcccccccceecc--cC-CCC---hH
Q 041957 98 IGPFIQSEWSYGGLPFWLHDVPGIT-FRCDNEPFK----KMKRLYASQGGPIILSQIENEYQMVENA--FG-ERG---PP 166 (734)
Q Consensus 98 ~GPyi~aE~~~Gg~P~Wl~~~p~~~-~R~~~~~y~----~~~~~~~~~ggpiI~~QiENEyg~~~~~--~~-~~~---~~ 166 (734)
+= . .|.|........ .......|. .++.. +++..+|++++|=||-...... .. ... .+
T Consensus 82 ~h----~------~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~-y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~ 150 (281)
T PF00150_consen 82 LH----N------APGWANGGDGYGNNDTAQAWFKSFWRALAKR-YKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQD 150 (281)
T ss_dssp EE----E------STTCSSSTSTTTTHHHHHHHHHHHHHHHHHH-HTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHH
T ss_pred ec----c------CccccccccccccchhhHHHHHhhhhhhccc-cCCCCcEEEEEecCCccccCCccccccccchhhhh
Confidence 62 1 177743321110 011111222 34444 4456789999999998753110 00 001 34
Q ss_pred HHHHHHHHHHhcCCccceEEe
Q 041957 167 YIKWAAEMAVGLQTGVPWVMC 187 (734)
Q Consensus 167 y~~~l~~~~~~~g~~vp~~~~ 187 (734)
+++.+.+..|+.+.+.+++..
T Consensus 151 ~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 151 WYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHhcCCcceeecC
Confidence 556666677888877665543
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.35 E-value=5.2e-06 Score=103.05 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=98.6
Q ss_pred eeEEEeCCeEEECCEEeEEEEEeeeCCC------CCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHH
Q 041957 8 GEVTYDGRSLIINGERKVLFSGSIHYPR------SPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLV 81 (734)
Q Consensus 8 ~~v~~d~~~~~~dg~~~~~~~G~~hy~r------~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~ 81 (734)
++|+++++.|+|||+|+++-|...|... ++++.|+.+|+.||++|+|+|++- |-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s-----HyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA-----HYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCC-----------CH
Confidence 5678889999999999999999988432 477899999999999999999983 4442 14
Q ss_pred HHHHHHHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCChhHH-----HHHHHH--hhcCCCEEEEccccccc
Q 041957 82 RFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK-----KMKRLY--ASQGGPIILSQIENEYQ 154 (734)
Q Consensus 82 ~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~-----~~~~~~--~~~ggpiI~~QiENEyg 154 (734)
+|+++|-+.||+|+--. |..|..|..-+ +...-+++|.|. +++.+. .+|+..||||=+-||-+
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 88999999999999765 33222221100 011123555553 233332 56899999999999975
Q ss_pred ceecccCCCChHHHHHHHHHHHhcCCccc
Q 041957 155 MVENAFGERGPPYIKWAAEMAVGLQTGVP 183 (734)
Q Consensus 155 ~~~~~~~~~~~~y~~~l~~~~~~~g~~vp 183 (734)
. + . .++.+.+.+++..-.=|
T Consensus 452 ~-----g---~-~~~~~~~~~k~~DptR~ 471 (1021)
T PRK10340 452 Y-----G---C-NIRAMYHAAKALDDTRL 471 (1021)
T ss_pred c-----c---H-HHHHHHHHHHHhCCCce
Confidence 3 2 2 24677777887765544
No 14
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.35 E-value=9.5e-06 Score=100.69 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=97.4
Q ss_pred eeEEEeCCeEEECCEEeEEEEEeeeCC------CCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHH
Q 041957 8 GEVTYDGRSLIINGERKVLFSGSIHYP------RSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLV 81 (734)
Q Consensus 8 ~~v~~d~~~~~~dg~~~~~~~G~~hy~------r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~ 81 (734)
++|++++..|+|||+|+++-+...|.. +++++.|+++|+.||++|+|+|++ .|-|.. .
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~-----------p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPNH-----------P 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------H
Confidence 567888999999999999999999843 357899999999999999999999 244422 5
Q ss_pred HHHHHHHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCChhHH-----HHHHHH--hhcCCCEEEEccccccc
Q 041957 82 RFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK-----KMKRLY--ASQGGPIILSQIENEYQ 154 (734)
Q Consensus 82 ~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~-----~~~~~~--~~~ggpiI~~QiENEyg 154 (734)
+|+++|-+.||+|+--..=..|+-+ |.. .+ .+++.|. +++.+. .+|+..||||=+-||-+
T Consensus 398 ~fydlcDe~GilV~dE~~~e~hg~~-----~~~-------~~-~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEANIETHGMV-----PMN-------RL-SDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHcCCEEEEecCccccCCc-----ccc-------CC-CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 8899999999999976521111111 110 01 2455554 333332 46899999999999975
Q ss_pred ceecccCCCChHHHHHHHHHHHhcCCccceE
Q 041957 155 MVENAFGERGPPYIKWAAEMAVGLQTGVPWV 185 (734)
Q Consensus 155 ~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~ 185 (734)
. + ...+.+.+.+++..-.=|..
T Consensus 465 ~-----g----~~~~~l~~~~k~~DptRpV~ 486 (1027)
T PRK09525 465 H-----G----ANHDALYRWIKSNDPSRPVQ 486 (1027)
T ss_pred c-----C----hhHHHHHHHHHhhCCCCcEE
Confidence 3 2 23456666777665444433
No 15
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.2e-05 Score=96.64 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=87.9
Q ss_pred eeEEEeCCeEEECCEEeEEEEEeeeCCCC------CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHH
Q 041957 8 GEVTYDGRSLIINGERKVLFSGSIHYPRS------PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLV 81 (734)
Q Consensus 8 ~~v~~d~~~~~~dg~~~~~~~G~~hy~r~------~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~ 81 (734)
++|++++..|+|||||+++-|..-|.+-. .++.-+++|++||++|+|+|+|- |-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------H
Confidence 57899999999999999999999997652 44558999999999999999997 66643 5
Q ss_pred HHHHHHHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCChhHH-----HHHHHH--hhcCCCEEEEccccccc
Q 041957 82 RFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK-----KMKRLY--ASQGGPIILSQIENEYQ 154 (734)
Q Consensus 82 ~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~-----~~~~~~--~~~ggpiI~~QiENEyg 154 (734)
+|+++|.+.||+||--+ ..||-. +| +++.|+ .++... .+|+..||||=+-||-|
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 78999999999999876 223322 22 455555 222222 46899999999999987
Q ss_pred c
Q 041957 155 M 155 (734)
Q Consensus 155 ~ 155 (734)
.
T Consensus 409 ~ 409 (808)
T COG3250 409 H 409 (808)
T ss_pred C
Confidence 4
No 16
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.91 E-value=4.4e-05 Score=74.78 Aligned_cols=95 Identities=24% Similarity=0.284 Sum_probs=66.3
Q ss_pred CCCCceEEEEEEeCCCCC--CCCceeEeCCcceEEEEEECCEEEEEEeccccCceeEEEeeeecCCCc-cEEEEEEecCC
Q 041957 409 KDTSDYLWYSFSFQPEPS--DTRAQLSVHSLGHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSLSNGI-NNVSLLSVMVG 485 (734)
Q Consensus 409 ~d~~GyllY~t~i~~~~~--~~~~~L~v~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILven~G 485 (734)
....|+.|||++|.++.+ .....|.+.++.+.+.|||||+++|...+.. ..+.+++.-.|+.|. |+|.|.|.+..
T Consensus 64 ~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v~~~~ 141 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRVDNWP 141 (167)
T ss_dssp STCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEEESSS
T ss_pred cccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEEeecC
Confidence 346899999999987653 2455788999999999999999999987544 235566655588887 99999998655
Q ss_pred ccccccccC-CccccceE-EEE
Q 041957 486 LPDSGAYLE-RKRYGPVA-VSI 505 (734)
Q Consensus 486 r~N~G~~~~-~~~kGI~g-v~l 505 (734)
...+-+.+. -...||.+ |.|
T Consensus 142 ~~~~~~~~~~~~~~GI~r~V~L 163 (167)
T PF02837_consen 142 DGSTIPGFDYFNYAGIWRPVWL 163 (167)
T ss_dssp GGGCGBSSSEEE--EEESEEEE
T ss_pred CCceeecCcCCccCccccEEEE
Confidence 433211111 13478877 766
No 17
>PLN02803 beta-amylase
Probab=97.59 E-value=0.00015 Score=81.94 Aligned_cols=79 Identities=20% Similarity=0.467 Sum_probs=62.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCcccCC-cCCeeeecCchhHHHHHHHHHHcCCEE--EEeeCccccccccCC-----
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFWNLHEP-QPGKYDFSGRRDLVRFIKEIQAQGLYA--SIRIGPFIQSEWSYG----- 109 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~gl~v--ilr~GPyi~aE~~~G----- 109 (734)
++.-+..|+++|++|+.-|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344677999999999999999999999998 599999995 667799999999994 4554 44543 112
Q ss_pred CCCccccc----CCCcc
Q 041957 110 GLPFWLHD----VPGIT 122 (734)
Q Consensus 110 g~P~Wl~~----~p~~~ 122 (734)
-||.|+.+ +|++.
T Consensus 180 pLP~WV~e~~~~~pDi~ 196 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLV 196 (548)
T ss_pred cCCHHHHHhhhcCCCce
Confidence 28999975 46663
No 18
>PLN00197 beta-amylase; Provisional
Probab=97.57 E-value=0.00017 Score=81.82 Aligned_cols=80 Identities=24% Similarity=0.507 Sum_probs=63.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCC-cCCeeeecCchhHHHHHHHHHHcCCEE--EEeeCccccccccCC----
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEP-QPGKYDFSGRRDLVRFIKEIQAQGLYA--SIRIGPFIQSEWSYG---- 109 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~gl~v--ilr~GPyi~aE~~~G---- 109 (734)
.++.-+..|+++|++|+.-|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4456788999999999999999999999998 799999996 667799999999994 5555 44544 122
Q ss_pred -CCCccccc----CCCcc
Q 041957 110 -GLPFWLHD----VPGIT 122 (734)
Q Consensus 110 -g~P~Wl~~----~p~~~ 122 (734)
-||.|+.+ +|++.
T Consensus 199 IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999975 56663
No 19
>PLN02705 beta-amylase
Probab=97.57 E-value=0.00014 Score=82.85 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=64.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCC-cCCeeeecCchhHHHHHHHHHHcCCE--EEEeeCccccccccCC----
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEP-QPGKYDFSGRRDLVRFIKEIQAQGLY--ASIRIGPFIQSEWSYG---- 109 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~gl~--vilr~GPyi~aE~~~G---- 109 (734)
.++.-+..|+++|++|+.-|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ .-|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4456788999999999999999999999998 699999995 66779999999999 55655 45554 222
Q ss_pred -CCCccccc----CCCcc
Q 041957 110 -GLPFWLHD----VPGIT 122 (734)
Q Consensus 110 -g~P~Wl~~----~p~~~ 122 (734)
-||.|+.+ +|++.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 28999985 46653
No 20
>PLN02801 beta-amylase
Probab=97.56 E-value=0.00018 Score=80.94 Aligned_cols=79 Identities=27% Similarity=0.510 Sum_probs=63.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCC-cCCeeeecCchhHHHHHHHHHHcCCEE--EEeeCccccccccCC----
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEP-QPGKYDFSGRRDLVRFIKEIQAQGLYA--SIRIGPFIQSEWSYG---- 109 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~gl~v--ilr~GPyi~aE~~~G---- 109 (734)
.++.-+..|+++|++|+.-|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556789999999999999999999999998 699999995 667799999999994 5555 44543 112
Q ss_pred -CCCccccc----CCCc
Q 041957 110 -GLPFWLHD----VPGI 121 (734)
Q Consensus 110 -g~P~Wl~~----~p~~ 121 (734)
-||.|+.+ +|++
T Consensus 109 IpLP~WV~~~g~~~pDi 125 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDI 125 (517)
T ss_pred ccCCHHHHHhhccCCCc
Confidence 28999974 4665
No 21
>PLN02161 beta-amylase
Probab=97.52 E-value=0.00024 Score=79.97 Aligned_cols=79 Identities=20% Similarity=0.439 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCC-cCCeeeecCchhHHHHHHHHHHcCCEE--EEeeCccccccccCC-----C
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEP-QPGKYDFSGRRDLVRFIKEIQAQGLYA--SIRIGPFIQSEWSYG-----G 110 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~gl~v--ilr~GPyi~aE~~~G-----g 110 (734)
+.-+..|+++|++|+.-|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-| -
T Consensus 117 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~Ip 190 (531)
T PLN02161 117 KALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGGIS 190 (531)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccCcc
Confidence 44677899999999999999999999998 799999995 667799999999994 4554 44443 112 2
Q ss_pred CCccccc----CCCccc
Q 041957 111 LPFWLHD----VPGITF 123 (734)
Q Consensus 111 ~P~Wl~~----~p~~~~ 123 (734)
||.|+.+ +|++.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 7999974 567643
No 22
>PLN02905 beta-amylase
Probab=97.52 E-value=0.00019 Score=82.01 Aligned_cols=78 Identities=19% Similarity=0.418 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCC-cCCeeeecCchhHHHHHHHHHHcCCE--EEEeeCccccccccCC-----C
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEP-QPGKYDFSGRRDLVRFIKEIQAQGLY--ASIRIGPFIQSEWSYG-----G 110 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~gl~--vilr~GPyi~aE~~~G-----g 110 (734)
+.-+..|+++|++|+.-|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ .-|+- +-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 44677899999999999999999999998 799999995 66779999999999 45555 44544 112 2
Q ss_pred CCccccc----CCCcc
Q 041957 111 LPFWLHD----VPGIT 122 (734)
Q Consensus 111 ~P~Wl~~----~p~~~ 122 (734)
||.|+.+ +|++.
T Consensus 360 LP~WV~e~g~~nPDif 375 (702)
T PLN02905 360 LPHWVAEIGRSNPDIF 375 (702)
T ss_pred CCHHHHHhhhcCCCce
Confidence 8999975 56663
No 23
>TIGR03356 BGL beta-galactosidase.
Probab=97.37 E-value=0.00027 Score=80.18 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCccccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHD 117 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~ 117 (734)
..|+++|++||++|+|++++-|.|...+|. +|++|.+|-...+++|+.|+++||.+|+-.=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 569999999999999999999999999999 79999888889999999999999998866521 237888764
Q ss_pred C
Q 041957 118 V 118 (734)
Q Consensus 118 ~ 118 (734)
.
T Consensus 126 ~ 126 (427)
T TIGR03356 126 R 126 (427)
T ss_pred c
Confidence 3
No 24
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.36 E-value=0.00027 Score=74.58 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=76.0
Q ss_pred CcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCChhHH-HHHHHHhhc
Q 041957 62 WNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK-KMKRLYASQ 140 (734)
Q Consensus 62 W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~-~~~~~~~~~ 140 (734)
|...||++|+|||+ .++++++.|+++||.|. ..+.+ |.. ..|.|+...+.-.++..=..|. .++.. -
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v~--gH~l~---W~~-~~P~W~~~~~~~~~~~~~~~~i~~v~~r---y 70 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKVR--GHTLV---WHS-QTPDWVFNLSKETLLARLENHIKTVVGR---Y 70 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEEE--EEEEe---ecc-cCCHhhhcCCHHHHHHHHHHHHHHHHHH---h
Confidence 89999999999999 89999999999999983 32222 433 6899987533111111001111 22232 2
Q ss_pred CCCEEEEccccccccee-------cccCCCChHHHHHHHHHHHhcCCccceEEec
Q 041957 141 GGPIILSQIENEYQMVE-------NAFGERGPPYIKWAAEMAVGLQTGVPWVMCK 188 (734)
Q Consensus 141 ggpiI~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 188 (734)
+|.|..|+|=||--... ..+...+.+|+...-+.+|+...++.++.++
T Consensus 71 ~g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 71 KGKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred CCcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 57799999999943211 0011234578888888899988888888765
No 25
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.33 E-value=0.0015 Score=70.10 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=79.8
Q ss_pred ceeEEEeCCeEE--ECCEEeEEEEEeeeCCCC-----------CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeee
Q 041957 7 GGEVTYDGRSLI--INGERKVLFSGSIHYPRS-----------PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYD 73 (734)
Q Consensus 7 ~~~v~~d~~~~~--~dg~~~~~~~G~~hy~r~-----------~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~d 73 (734)
-..|++.++.|. .+|++|+|-+-.+.+.-. .++.|+.++..||++|+|||++|-.
T Consensus 8 ~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v------------ 75 (314)
T PF03198_consen 8 VPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV------------ 75 (314)
T ss_dssp S--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES--------------
T ss_pred CCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe------------
Confidence 356888999999 799999999887776332 4578999999999999999999942
Q ss_pred ecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCCh--hHH--------HHHHHHhhcCCC
Q 041957 74 FSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNE--PFK--------KMKRLYASQGGP 143 (734)
Q Consensus 74 f~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~--~y~--------~~~~~~~~~ggp 143 (734)
.-.+|=++++++.+++||||||-.+. |...+...+| .|- ++.+-+ .+-.+
T Consensus 76 -dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~f-a~Y~N 135 (314)
T PF03198_consen 76 -DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAF-AKYDN 135 (314)
T ss_dssp --TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHH-TT-TT
T ss_pred -CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHh-ccCCc
Confidence 12247789999999999999998742 2222333334 332 333333 45578
Q ss_pred EEEEcccccccceecccC--CCChHHHHHHHHHHHhcCC-ccce
Q 041957 144 IILSQIENEYQMVENAFG--ERGPPYIKWAAEMAVGLQT-GVPW 184 (734)
Q Consensus 144 iI~~QiENEyg~~~~~~~--~~~~~y~~~l~~~~~~~g~-~vp~ 184 (734)
++++=+-||.-.-...-. ..-|+..+-+|+-.++.+. .+|.
T Consensus 136 ~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 136 TLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp EEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred eEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 999999999864211000 0223444455555555565 4453
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.27 E-value=0.00023 Score=78.70 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEEeeCcccccc----ccCCCCCcc
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSE----WSYGGLPFW 114 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE----~~~Gg~P~W 114 (734)
.-+..|+++|++|+..|.+.|.|...|.. |++|||+| .+++.++++++||++.+-.-=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 35678999999999999999999999997 99999995 77889999999999554332244421 112237999
Q ss_pred ccc
Q 041957 115 LHD 117 (734)
Q Consensus 115 l~~ 117 (734)
+.+
T Consensus 94 v~~ 96 (402)
T PF01373_consen 94 VWE 96 (402)
T ss_dssp HHH
T ss_pred HHh
Confidence 974
No 27
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.01 E-value=0.006 Score=65.76 Aligned_cols=227 Identities=21% Similarity=0.320 Sum_probs=104.4
Q ss_pred CCeEE-ECCEEeEEEEEeee--CCCCCcccHHHHHHHHHHcCCCEEEEcee--Cccc--------CC----cCCeeeecC
Q 041957 14 GRSLI-INGERKVLFSGSIH--YPRSPREMWPSLISKAKEGGLDVIQTYVF--WNLH--------EP----QPGKYDFSG 76 (734)
Q Consensus 14 ~~~~~-~dg~~~~~~~G~~h--y~r~~~~~W~~~l~k~ka~G~N~v~~yv~--W~~h--------Ep----~~G~~df~g 76 (734)
++.|. -||+||+.++=... ..|...+.|+.-|+..|+.|||+|++=|+ |.-+ .| .++.+||+.
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~ 81 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTR 81 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT
T ss_pred CceEecCCCCEEeehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCC
Confidence 45666 79999999984433 24578899999999999999999999887 4422 12 123377765
Q ss_pred c-----hhHHHHHHHHHHcCCEEEEee---CccccccccCCCCCcccccCCCccccCCChhHH-HHHHHHhhcCCCEEEE
Q 041957 77 R-----RDLVRFIKEIQAQGLYASIRI---GPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFK-KMKRLYASQGGPIILS 147 (734)
Q Consensus 77 ~-----~dl~~fl~~a~~~gl~vilr~---GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~~~y~-~~~~~~~~~ggpiI~~ 147 (734)
- ..|++.|+.|.+.||.+-|-| +||.-+-|-+| +.+.-..++..|. -+...+ +.=.+|| |
T Consensus 82 ~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~---------~~~m~~e~~~~Y~~yv~~Ry-~~~~Nvi-W 150 (289)
T PF13204_consen 82 PNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG---------PNIMPPENAERYGRYVVARY-GAYPNVI-W 150 (289)
T ss_dssp ----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH----------------TTSS-HHHHHHHHHHHHHHH-TT-SSEE-E
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc---------ccCCCHHHHHHHHHHHHHHH-hcCCCCE-E
Confidence 3 489999999999999965433 23333333332 1221223344565 233332 2233566 6
Q ss_pred cccccccceecccCCCChHHHHHHHHHHHhcCCccceEEecCCC--CC-----ccccc--cC-CCCCC--CCCC------
Q 041957 148 QIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVPWVMCKQDD--AP-----DPVIN--AC-NGRKC--GETF------ 209 (734)
Q Consensus 148 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~--~~-----~~~~~--~~-~g~~~--~~~~------ 209 (734)
=|-||+ . ......++.+.+.+.+++..-.-+........ .+ .+-++ +. +|... .+.+
T Consensus 151 ~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~~~~~~~~~~~~~~ 225 (289)
T PF13204_consen 151 ILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHNRYDQDNWYYLPEE 225 (289)
T ss_dssp EEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S--TT--THHHH--H
T ss_pred EecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCCcccchHHHHHhhh
Confidence 689999 1 12467788888888888764322322211111 10 00011 11 11100 0000
Q ss_pred -CCCCCCCCCceeee-cccccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 041957 210 -KGPNSPNKPSIWTE-NWTSRYQAYGEDPIGRTADDIAFHVALWVARNG 256 (734)
Q Consensus 210 -~~~~~~~~P~~~~E-~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 256 (734)
.-...|.+|.+..| -|.|-...+.......+++++...+=.-+-+|+
T Consensus 226 ~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 226 FDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp HHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred hhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 00346889999999 344544333333345678888766444444454
No 28
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.75 E-value=0.0027 Score=62.05 Aligned_cols=67 Identities=25% Similarity=0.457 Sum_probs=51.3
Q ss_pred CCCceEEEEEEEecCCC--CceEEeeCCC-ceEEEEECCeeceeccccccCCCCCCceeeeccCCCccCCCC-cEEEEE
Q 041957 552 SPPLTWYKTVFDATGED--EYVALNLNGM-RKGEARVNGRSIGRYWPSLITPRGEPSQISYNIPRSFLKPTG-NLLVLL 626 (734)
Q Consensus 552 ~~~~~~Yk~~F~~~~~~--dp~~Ld~~g~-gKG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~~Lk~g~-N~ivif 626 (734)
..+..|||.+|++|+.. ..++|.+.|. ....|||||+.+|+-.. +-...-+.|+. .|++|. |+|.|.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~-------~~~~~~~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG-------GYTPFEFDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES-------TTS-EEEECGG-GSSSEEEEEEEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC-------CcCCeEEeChh-hccCCCCEEEEEE
Confidence 35679999999998653 4689999986 58999999999999763 23334455764 789888 988874
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.40 E-value=0.038 Score=54.79 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=79.1
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEceeCcccC-----Cc---CCeeeecCchhHHHHHHHHHHcCCEEEEeeCcccccc
Q 041957 34 PRSPREMWPSLISKAKEGGLDVIQTYVFWNLHE-----PQ---PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSE 105 (734)
Q Consensus 34 ~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hE-----p~---~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE 105 (734)
..++++.|+++|+.||++|++||-+- |...+ |. ++.|.-.....|+.+|++|++.||+|++..+ +-..=
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~-~~~~~ 91 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY-FDPDY 91 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC-CCchh
Confidence 46899999999999999999999533 33222 11 2223333445899999999999999998763 11122
Q ss_pred ccCCCCCcccccCCCccccCCChhHH--HHHHH---HhhcCCCEEEEcccccccceecccCCCChHHHHHHHHHHHhcCC
Q 041957 106 WSYGGLPFWLHDVPGITFRCDNEPFK--KMKRL---YASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQT 180 (734)
Q Consensus 106 ~~~Gg~P~Wl~~~p~~~~R~~~~~y~--~~~~~---~~~~ggpiI~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 180 (734)
|+ -+-+.| ..++ +++.. .+.+....=+|=|=.|..... ....++.+.|.+.+++.--
T Consensus 92 w~-~~~~~~-------------~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l~~~lk~~s~ 153 (166)
T PF14488_consen 92 WD-QGDLDW-------------EAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFALLGKYLKQISP 153 (166)
T ss_pred hh-ccCHHH-------------HHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHHHHHHHHHhCC
Confidence 22 122333 1121 22222 356677888888888886542 2345666667766665422
Q ss_pred ccc
Q 041957 181 GVP 183 (734)
Q Consensus 181 ~vp 183 (734)
+.|
T Consensus 154 ~~P 156 (166)
T PF14488_consen 154 GKP 156 (166)
T ss_pred CCC
Confidence 334
No 30
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.017 Score=65.30 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=69.0
Q ss_pred CcccH-----HHHHHHHHHcCCCEEEEceeCcccCCc----CCeeeecCchhHHHHHHHHHHcCCEEEEeeCcccccccc
Q 041957 37 PREMW-----PSLISKAKEGGLDVIQTYVFWNLHEPQ----PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWS 107 (734)
Q Consensus 37 ~~~~W-----~~~l~k~ka~G~N~v~~yv~W~~hEp~----~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~ 107 (734)
....| ++.+..||.+|||+||+++.|..+++. |...+=.-...|+++|+.|++.||+|+|-.-=|-+ -.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--GN 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--CC
Confidence 45668 899999999999999999994444654 33332222237999999999999999987421100 00
Q ss_pred CCCCCcccccCCCccccCCChhHHHHHHHH---hhcCCCEEEEcccccccc
Q 041957 108 YGGLPFWLHDVPGITFRCDNEPFKKMKRLY---ASQGGPIILSQIENEYQM 155 (734)
Q Consensus 108 ~Gg~P~Wl~~~p~~~~R~~~~~y~~~~~~~---~~~ggpiI~~QiENEyg~ 155 (734)
++-=..|....-.- --++-..|.++-+.. +++.-.||++|+=||--.
T Consensus 144 ~~~~~s~~~~~~~~-~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYKE-ENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCcccccccccc-cchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 11112332211000 000012344332222 456789999999999753
No 31
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.09 E-value=0.0034 Score=71.86 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ--PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLH 116 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~ 116 (734)
..|+++|+.||++|+|+.+.-|-|.-.+|. +|++|-.|....+++|+.++++||..|+-. ---.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 469999999999999999999999999999 699999999999999999999999977664 2345799986
Q ss_pred c
Q 041957 117 D 117 (734)
Q Consensus 117 ~ 117 (734)
+
T Consensus 130 ~ 130 (455)
T PF00232_consen 130 D 130 (455)
T ss_dssp H
T ss_pred e
Confidence 5
No 32
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.76 E-value=0.03 Score=66.50 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=55.7
Q ss_pred CCCceEEEEEEeCCCCC--CCCceeEeCCcceEEEEEECCEEEEEEeccccCceeEEEeeeecCCCc-cEEEEEEecC
Q 041957 410 DTSDYLWYSFSFQPEPS--DTRAQLSVHSLGHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSLSNGI-NNVSLLSVMV 484 (734)
Q Consensus 410 d~~GyllY~t~i~~~~~--~~~~~L~v~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILven~ 484 (734)
+..|..|||++|.++.. .....|.+.++...+.|||||+.||...+.. ..+.+++.-.|+.|. |+|.|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~n~ 137 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVNNE 137 (604)
T ss_pred CCcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEecC
Confidence 35789999999987643 2456888999999999999999999987544 235565544467774 4999999774
No 33
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.68 E-value=0.035 Score=69.62 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=63.5
Q ss_pred ceEEEEEEeCCCCC--CCCceeEeCCcceEEEEEECCEEEEEEeccccCceeEEEeeeecCCCccEEEEEEecCCccccc
Q 041957 413 DYLWYSFSFQPEPS--DTRAQLSVHSLGHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSLSNGINNVSLLSVMVGLPDSG 490 (734)
Q Consensus 413 GyllY~t~i~~~~~--~~~~~L~v~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N~G 490 (734)
+--|||++|.++.+ .....|.+.++...++|||||++||...+.. ..+.+++.--|+.|.|+|.|.|.+... +
T Consensus 109 ~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d---~ 183 (1021)
T PRK10340 109 PTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD---S 183 (1021)
T ss_pred CeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC---C
Confidence 56799999987643 2456788999999999999999999876544 235555544477888999999974322 2
Q ss_pred cccCC----ccccceE-EEEcc
Q 041957 491 AYLER----KRYGPVA-VSIQN 507 (734)
Q Consensus 491 ~~~~~----~~kGI~g-v~l~g 507 (734)
..+++ ...||.. |.|-.
T Consensus 184 s~le~qd~w~~sGI~R~V~L~~ 205 (1021)
T PRK10340 184 TYLEDQDMWWLAGIFRDVYLVG 205 (1021)
T ss_pred CccccCCccccccccceEEEEE
Confidence 22221 2368887 77744
No 34
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=95.67 E-value=0.0072 Score=66.09 Aligned_cols=148 Identities=15% Similarity=0.241 Sum_probs=95.0
Q ss_pred EEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEc--eeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 26 LFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTY--VFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 26 ~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~y--v~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
.+|..++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|--.+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~----- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT----- 79 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE-----
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee-----
Confidence 688888887765442 3445555679999876 5599999999999999 89999999999999976443
Q ss_pred ccccCCCCCcccccCCCccccCCCh-hHH--------HHHHHHhhcCCCEEEEcccccccceec---------ccCCCCh
Q 041957 104 SEWSYGGLPFWLHDVPGITFRCDNE-PFK--------KMKRLYASQGGPIILSQIENEYQMVEN---------AFGERGP 165 (734)
Q Consensus 104 aE~~~Gg~P~Wl~~~p~~~~R~~~~-~y~--------~~~~~~~~~ggpiI~~QiENEyg~~~~---------~~~~~~~ 165 (734)
-=|.. ..|.|+...+.. ...++ ..+ .++.. |++-|.|.+|-|=||-=.... .+...+.
T Consensus 80 LvW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~-y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~ 155 (320)
T PF00331_consen 80 LVWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTR-YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGP 155 (320)
T ss_dssp EEESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHH-TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTT
T ss_pred EEEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhH-hccccceEEEEEeeecccCCCccccccCChhhhcccH
Confidence 11433 689999864111 00001 122 22222 222289999999999632110 0111235
Q ss_pred HHHHHHHHHHHhcCCccceEEec
Q 041957 166 PYIKWAAEMAVGLQTGVPWVMCK 188 (734)
Q Consensus 166 ~y~~~l~~~~~~~g~~vp~~~~~ 188 (734)
+|+...-+.+++...++.|+.++
T Consensus 156 ~yi~~aF~~A~~~~P~a~L~~ND 178 (320)
T PF00331_consen 156 DYIADAFRAAREADPNAKLFYND 178 (320)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHHHhCCCcEEEecc
Confidence 78888888888888888888876
No 35
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.39 E-value=0.055 Score=67.90 Aligned_cols=89 Identities=22% Similarity=0.341 Sum_probs=62.1
Q ss_pred ceEEEEEEeCCCCC--CC-CceeEeCCcceEEEEEECCEEEEEEeccccCceeEEEeeeecCCCccEEEEEEecCCcccc
Q 041957 413 DYLWYSFSFQPEPS--DT-RAQLSVHSLGHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSLSNGINNVSLLSVMVGLPDS 489 (734)
Q Consensus 413 GyllY~t~i~~~~~--~~-~~~L~v~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N~ 489 (734)
+-.|||++|.++.+ .. ...|.+.++.-.+.|||||++||...+.. ..+.+++.-.|+.|.|+|.|.|...- .
T Consensus 120 ~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~s---d 194 (1027)
T PRK09525 120 PTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRWS---D 194 (1027)
T ss_pred CeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEecC---C
Confidence 67899999988653 12 46788999999999999999999876543 23556555447788899999884321 1
Q ss_pred ccccCC----ccccceE-EEEc
Q 041957 490 GAYLER----KRYGPVA-VSIQ 506 (734)
Q Consensus 490 G~~~~~----~~kGI~g-v~l~ 506 (734)
|..+++ ...||.. |.|-
T Consensus 195 gs~~e~qd~w~~sGI~R~V~L~ 216 (1027)
T PRK09525 195 GSYLEDQDMWRMSGIFRDVSLL 216 (1027)
T ss_pred CCccccCCceeeccccceEEEE
Confidence 222221 2368887 7774
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=95.38 E-value=0.02 Score=65.90 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ--PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLH 116 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~ 116 (734)
..|+++++.||++|+|+.++-+-|.-.+|. ++++|=+|-...+++|+.++++||.+++-. --=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 457999999999999999999999999997 566787888899999999999999987664 1224677763
No 37
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.02 E-value=0.037 Score=60.67 Aligned_cols=96 Identities=21% Similarity=0.389 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCEEEEceeCcccCCcC-CeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccccCCC
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLHEPQP-GKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPG 120 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~hEp~~-G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~ 120 (734)
+|.|+.||+.|+|.|+.=| | +.|.. |..|.+ ++.++.+.|+++||+|+|-+- |. -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 5899999999999999999 4 45555 655555 666666777889999999873 32 1232 233
Q ss_pred ccc-----cCCC------h--hHH-HHHHHHhhcCCCEEEEcccccccc
Q 041957 121 ITF-----RCDN------E--PFK-KMKRLYASQGGPIILSQIENEYQM 155 (734)
Q Consensus 121 ~~~-----R~~~------~--~y~-~~~~~~~~~ggpiI~~QiENEyg~ 155 (734)
-+. +..+ . .|. .+...+..+|=.+=||||-||...
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccc
Confidence 211 1101 1 122 333444567888899999999864
No 38
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=95.00 E-value=0.041 Score=63.44 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ--PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLH 116 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~ 116 (734)
..|+++|+.||++|+|+.++-|-|.-..|. +|+++-.|....+++|+.+.++||..++-. --=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 469999999999999999999999999996 567888888899999999999999977664 1123677774
No 39
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=94.73 E-value=0.056 Score=62.21 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCccccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHD 117 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~ 117 (734)
..|+++++.||++|+|+-++-|-|.-.+|. +|.+|=+|...-+++|+.+.++||..++-.= =| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 569999999999999999999999999996 6778888889999999999999999776641 12 36888754
No 40
>PLN02998 beta-glucosidase
Probab=94.60 E-value=0.046 Score=63.29 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCccccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHD 117 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~ 117 (734)
..|+++|+.||++|+|+-++-|-|.-.+|. .|.+|=+|...-+++|+.+.++||..++-.= =| -+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 569999999999999999999999999996 6778888999999999999999999665541 12 25777643
Q ss_pred CCCccccCCChhHHHHHHHHhhcCCCEEEEcccccccceecccCCCChHHHHHHHHHHHhcCCccc-eEEec
Q 041957 118 VPGITFRCDNEPFKKMKRLYASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVP-WVMCK 188 (734)
Q Consensus 118 ~p~~~~R~~~~~y~~~~~~~~~~ggpiI~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~ 188 (734)
+||.+.. .+.-..|.++.+-.+++.|-.|. |+|.+
T Consensus 154 ----------------------------------~yGGW~n--~~~v~~F~~YA~~~~~~fgdrVk~WiT~N 189 (497)
T PLN02998 154 ----------------------------------EYGGWLS--QEIVRDFTAYADTCFKEFGDRVSHWTTIN 189 (497)
T ss_pred ----------------------------------hhCCcCC--chHHHHHHHHHHHHHHHhcCcCCEEEEcc
Confidence 2332211 11234677888888888887776 67644
No 41
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=94.54 E-value=0.061 Score=62.02 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=78.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ--PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLH 116 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~ 116 (734)
..|+++++.||++|+|+-++-|-|.-.+|. +|+++=.|-..-+++|+.+.++||..++-.= =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 569999999999999999999999999997 6678888888999999999999998665540 12 3677774
Q ss_pred cCCCccccCCChhHHHHHHHHhhcCCCEEEEcccccccceecccCCCChHHHHHHHHHHHhcCCccc-eEEec
Q 041957 117 DVPGITFRCDNEPFKKMKRLYASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVP-WVMCK 188 (734)
Q Consensus 117 ~~p~~~~R~~~~~y~~~~~~~~~~ggpiI~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~ 188 (734)
. +||.+.. .+.-..|.++.+-.+++.|-.|. |+|.+
T Consensus 145 ~----------------------------------~~GGW~n--~~~v~~F~~YA~~~~~~fgdrVk~WiT~N 181 (478)
T PRK09593 145 E----------------------------------EYGGWRN--RKMVGFYERLCRTLFTRYKGLVKYWLTFN 181 (478)
T ss_pred h----------------------------------hcCCCCC--hHHHHHHHHHHHHHHHHhcCcCCEEEeec
Confidence 3 2222211 11234677777777888777776 66644
No 42
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=94.23 E-value=0.069 Score=61.60 Aligned_cols=106 Identities=18% Similarity=0.273 Sum_probs=78.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ--PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLH 116 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~ 116 (734)
..|+++++.||++|+|+-++-|-|.-.+|. +|.++=.|-..-+++|+.+.++||..++-.= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 459999999999999999999999999997 5668888888999999999999998776541 11 2577764
Q ss_pred cCCCccccCCChhHHHHHHHHhhcCCCEEEEcccccccceecccCCCChHHHHHHHHHHHhcCCccc-eEEec
Q 041957 117 DVPGITFRCDNEPFKKMKRLYASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVP-WVMCK 188 (734)
Q Consensus 117 ~~p~~~~R~~~~~y~~~~~~~~~~ggpiI~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~ 188 (734)
. +||.+.. .+.-..|.++.+-.+++.|-.|. |+|.+
T Consensus 139 ~----------------------------------~yGGW~n--~~~i~~F~~YA~~~f~~fgdrVk~WiT~N 175 (476)
T PRK09589 139 T----------------------------------EYGGWRN--RKLIDFFVRFAEVVFTRYKDKVKYWMTFN 175 (476)
T ss_pred H----------------------------------hcCCcCC--hHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3 2332211 01234677777778888777665 66654
No 43
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=93.94 E-value=0.099 Score=60.21 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCccccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHD 117 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~ 117 (734)
..|+++++.||++|+|+-++-|-|.-.+|. .|.+|-.|...-+++|+.+.++||.-++-.= -=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH--------HFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec--------CCCCcHHHHH
Confidence 568999999999999999999999999996 5788888999999999999999999666541 1136888754
No 44
>PLN02849 beta-glucosidase
Probab=93.57 E-value=0.11 Score=60.42 Aligned_cols=106 Identities=19% Similarity=0.299 Sum_probs=79.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCccccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHD 117 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~ 117 (734)
..|+++|+.||++|+|+-++-|-|.-.+|. .|.+|=.|-..-+++|+.+.++||.-++-.= =| -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHH
Confidence 458999999999999999999999999996 4778888989999999999999999665541 11 25666643
Q ss_pred CCCccccCCChhHHHHHHHHhhcCCCEEEEcccccccceecccCCCChHHHHHHHHHHHhcCCccc-eEEec
Q 041957 118 VPGITFRCDNEPFKKMKRLYASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVP-WVMCK 188 (734)
Q Consensus 118 ~p~~~~R~~~~~y~~~~~~~~~~ggpiI~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~ 188 (734)
+||.+.. .+.-..|.++.+-.+++.|-.|. |+|.+
T Consensus 151 ----------------------------------~yGGW~n--r~~v~~F~~YA~~~f~~fgDrVk~WiT~N 186 (503)
T PLN02849 151 ----------------------------------DYGGWIN--RRIIKDFTAYADVCFREFGNHVKFWTTIN 186 (503)
T ss_pred ----------------------------------hcCCcCC--chHHHHHHHHHHHHHHHhcCcCCEEEEec
Confidence 3333311 11345688888888888887776 66644
No 45
>PLN02814 beta-glucosidase
Probab=93.27 E-value=0.14 Score=59.53 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCccccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHD 117 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~ 117 (734)
..|+++++.||++|+|+-++-|-|.-.+|. +|.+|-+|-..-+++|+.+.++||..++-.= =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 569999999999999999999999999996 6888989999999999999999999776541 12 25777643
Q ss_pred CCCccccCCChhHHHHHHHHhhcCCCEEEEcccccccceecccCCCChHHHHHHHHHHHhcCCccc-eEEecCC
Q 041957 118 VPGITFRCDNEPFKKMKRLYASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVP-WVMCKQD 190 (734)
Q Consensus 118 ~p~~~~R~~~~~y~~~~~~~~~~ggpiI~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~~~ 190 (734)
+||.+.. .+.-..|.++.+-.+++.|-.|. |+|.+..
T Consensus 149 ----------------------------------~yGGW~n--~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP 186 (504)
T PLN02814 149 ----------------------------------EYGGWIN--RKIIEDFTAFADVCFREFGEDVKLWTTINEA 186 (504)
T ss_pred ----------------------------------hcCCcCC--hhHHHHHHHHHHHHHHHhCCcCCEEEecccc
Confidence 2333211 11234677888888888877776 6665543
No 46
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.27 E-value=0.35 Score=51.60 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHH---cCCEEEEeeCccccccccCCCCCccccc
Q 041957 41 WPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQA---QGLYASIRIGPFIQSEWSYGGLPFWLHD 117 (734)
Q Consensus 41 W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~---~gl~vilr~GPyi~aE~~~Gg~P~Wl~~ 117 (734)
=+|.|+-+|+.|+|-|++-| |+.---..|.=-=.|+.|+.+.|++|+. .||+|+|-+= | -+|-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y----------SDfwa- 131 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y----------SDFWA- 131 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c----------hhhcc-
Confidence 46889999999999999876 5654334444444577899999998854 6999999872 1 12221
Q ss_pred CCCcc------ccCCCh-------hHH-HHHHHHhhcCCCEEEEcccccccc
Q 041957 118 VPGIT------FRCDNE-------PFK-KMKRLYASQGGPIILSQIENEYQM 155 (734)
Q Consensus 118 ~p~~~------~R~~~~-------~y~-~~~~~~~~~ggpiI~~QiENEyg~ 155 (734)
+|+-+ ..-+-. .|. .....+.++|=-+=||||-||-.+
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~ 183 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG 183 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC
Confidence 23211 111100 111 233445677878889999999853
No 47
>PRK09936 hypothetical protein; Provisional
Probab=92.91 E-value=0.19 Score=53.74 Aligned_cols=58 Identities=26% Similarity=0.464 Sum_probs=47.2
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCc-hhHHHHHHHHHHcCCEEEEee
Q 041957 35 RSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGR-RDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 35 r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~-~dl~~fl~~a~~~gl~vilr~ 98 (734)
+++++.|+.+++.+|+.|++|+- |=|... |.=||.+. -+|.+.++.|++.||.|+|.-
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 57899999999999999999974 456544 11188764 499999999999999998764
No 48
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=92.23 E-value=0.35 Score=52.30 Aligned_cols=124 Identities=20% Similarity=0.306 Sum_probs=83.5
Q ss_pred HHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccccCCCccccCCC
Q 041957 48 AKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDN 127 (734)
Q Consensus 48 ~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~~~p~~~~R~~~ 127 (734)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|++.+.|+++||.+--. +.| |-+ -.|.|+..+.. +-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e~-----~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDEL-----SK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhcccc-----Ch
Confidence 4444444444555599999999999999 6789999999999964433 233 323 58999976321 11
Q ss_pred hhHH--------HHHHHHhhcCCCEEEEccccccccee----c---ccCCCChHHHHHHHHHHHhcCCccceEEec
Q 041957 128 EPFK--------KMKRLYASQGGPIILSQIENEYQMVE----N---AFGERGPPYIKWAAEMAVGLQTGVPWVMCK 188 (734)
Q Consensus 128 ~~y~--------~~~~~~~~~ggpiI~~QiENEyg~~~----~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 188 (734)
++.. .++..+ -|-|+.|-|=||-=+-. + ..+..+.+|+++.-..+|+.+-+.-|+-++
T Consensus 121 ~~~~~~~e~hI~tV~~rY---kg~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ND 193 (345)
T COG3693 121 EALAKMVEEHIKTVVGRY---KGSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIND 193 (345)
T ss_pred HHHHHHHHHHHHHHHHhc---cCceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeec
Confidence 2222 222232 35599999999963311 1 112367899999999999988888788765
No 49
>smart00642 Aamy Alpha-amylase domain.
Probab=92.20 E-value=0.35 Score=47.88 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccC-------CcCCee-----eecCchhHHHHHHHHHHcCCEEEEeeCccc
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHE-------PQPGKY-----DFSGRRDLVRFIKEIQAQGLYASIRIGPFI 102 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hE-------p~~G~~-----df~g~~dl~~fl~~a~~~gl~vilr~GPyi 102 (734)
-+.+.|..+|++|+|+|.+-=++..-+ -.+..| .|....+|+++++.|+++||+||+-.=|-=
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 355677779999999998764433222 112222 355667999999999999999998874433
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=91.58 E-value=0.48 Score=45.26 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCEEEEcee----Cc-----ccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCc
Q 041957 43 SLISKAKEGGLDVIQTYVF----WN-----LHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPF 113 (734)
Q Consensus 43 ~~l~k~ka~G~N~v~~yv~----W~-----~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~ 113 (734)
+-++.+|++|+|+|.++.- |. .|.+.|+- .. .-|.+++++|+++||.|++|...- --|+-.--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~---Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KR---DLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-Cc---CHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4467899999999998542 32 34444443 12 257999999999999999998644 23333445688
Q ss_pred ccccCCC
Q 041957 114 WLHDVPG 120 (734)
Q Consensus 114 Wl~~~p~ 120 (734)
|+..+++
T Consensus 79 W~~~~~~ 85 (132)
T PF14871_consen 79 WFVRDAD 85 (132)
T ss_pred eeeECCC
Confidence 9876543
No 51
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.07 E-value=0.28 Score=55.71 Aligned_cols=72 Identities=26% Similarity=0.445 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcCCe--eeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCCCCcccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGK--YDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLH 116 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~--~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg~P~Wl~ 116 (734)
..++++++.||++|+|+.++-|-|.-.-|..+. .+=.|-+..+++|+.|.++|+.-++-.= =|+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHh
Confidence 458999999999999999999999999996554 7878888999999999999999776541 122 588886
Q ss_pred cC
Q 041957 117 DV 118 (734)
Q Consensus 117 ~~ 118 (734)
+.
T Consensus 131 ~~ 132 (460)
T COG2723 131 KP 132 (460)
T ss_pred hc
Confidence 53
No 52
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=90.33 E-value=0.23 Score=58.14 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=27.0
Q ss_pred CcccccCCCCCCCcCCCCCCchHHHHHHHH
Q 041957 277 FVTASYYDDAPLDEYGMINQPKWGHLKELH 306 (734)
Q Consensus 277 ~~~TSYDY~Api~E~G~~~tpky~~lr~l~ 306 (734)
...|||||+||+.|+|++.++||.++|+..
T Consensus 324 ~~hts~d~~ep~lv~gd~~~~kyg~~~~~C 353 (649)
T KOG0496|consen 324 PLHTSYDYCEPALVAGDITTAKYGNLREAC 353 (649)
T ss_pred cchhhhhhcCccccccCcccccccchhhHH
Confidence 488999999999999998899999999653
No 53
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=87.90 E-value=0.85 Score=44.58 Aligned_cols=70 Identities=24% Similarity=0.167 Sum_probs=38.6
Q ss_pred EeeeccCCCCC--CCCCCCccc---ccccCCChHHHHHHHcCCCCccEEeeC----CCCccC-CCCC--CCceEEEEEEE
Q 041957 659 ILFASYGTPFG--GCGRDGHAI---GYCDSPNSKFAAEKACLGKRSCLIPAS----DQFFDG-DPCP--SKKKSLIVEAH 726 (734)
Q Consensus 659 I~~A~YGr~~~--~C~~~~~~~---~~C~~~~sl~~V~~~C~Gk~~C~i~a~----~~~Fg~-DPC~--gt~KyL~V~y~ 726 (734)
|..|.||.... .+....... ..+..-+.+-.+ .|.=+.|+-.... ..+.|. |||| |+.|.|.|.|+
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipL--q~lV~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPL--QALVKDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhh--hhEeecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 88999999653 333211111 112222332223 3443445444333 234443 9999 88999999999
Q ss_pred EecC
Q 041957 727 CGPI 730 (734)
Q Consensus 727 C~~~ 730 (734)
....
T Consensus 133 f~g~ 136 (151)
T PF11875_consen 133 FRGK 136 (151)
T ss_pred ECCE
Confidence 7653
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=85.89 E-value=1.8 Score=51.75 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=45.0
Q ss_pred eeeCCCCCc-ccHH---HHH-HHHHHcCCCEEEE-ceeCcccCCcCC---------eeeecCchhHHHHHHHHHHcCCEE
Q 041957 30 SIHYPRSPR-EMWP---SLI-SKAKEGGLDVIQT-YVFWNLHEPQPG---------KYDFSGRRDLVRFIKEIQAQGLYA 94 (734)
Q Consensus 30 ~~hy~r~~~-~~W~---~~l-~k~ka~G~N~v~~-yv~W~~hEp~~G---------~~df~g~~dl~~fl~~a~~~gl~v 94 (734)
|+|.....+ -.++ ++| ..+|++|+|+|.+ +|+..-....=| .-.|.+..+|.+|++.|+++||.|
T Consensus 143 e~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~V 222 (613)
T TIGR01515 143 ELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGV 222 (613)
T ss_pred EEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEE
Confidence 566543322 2243 343 7779999999998 676432110000 113555679999999999999999
Q ss_pred EEee
Q 041957 95 SIRI 98 (734)
Q Consensus 95 ilr~ 98 (734)
||-.
T Consensus 223 ilD~ 226 (613)
T TIGR01515 223 ILDW 226 (613)
T ss_pred EEEe
Confidence 9975
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=85.86 E-value=2.2 Score=46.54 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=43.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCc-------ccCCc-------CCe-eeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWN-------LHEPQ-------PGK-YDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~-------~hEp~-------~G~-~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.++.-++.|++++++|||+|-.-|.+. -.+|. +|. -.|+ -|+.+|+.|+++||.|..+.
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE
Confidence 567788999999999999998666542 12221 111 0133 79999999999999999776
No 56
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=85.85 E-value=1.3 Score=49.34 Aligned_cols=70 Identities=26% Similarity=0.275 Sum_probs=47.4
Q ss_pred EEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCccc
Q 041957 27 FSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFI 102 (734)
Q Consensus 27 ~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi 102 (734)
+|=++++...+.+..+..|++|+++|+..|-| ++|.|+...=+.- ..+..+++.|+++||.|++-..|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHH
Confidence 45577777778889999999999999987655 7899986443322 3789999999999999999987644
No 57
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=85.48 E-value=0.84 Score=48.16 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCcccCCcCC--eee-------ecCchhHHHHHHHHHHcCCEEEEeeCc
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLHEPQPG--KYD-------FSGRRDLVRFIKEIQAQGLYASIRIGP 100 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~hEp~~G--~~d-------f~g~~dl~~fl~~a~~~gl~vilr~GP 100 (734)
.+.|..+|++|+|+|.+-=++...+.--| .-| |.+..+|.++++.|+++||+|||-.=+
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 36788999999999998755443221111 222 234569999999999999999987633
No 58
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.17 E-value=1.3 Score=51.14 Aligned_cols=61 Identities=10% Similarity=0.264 Sum_probs=42.7
Q ss_pred cccHH---HHHHHHHHcCCCEEEEc-eeCcc-----cCCcCCe-e-------------eecCchhHHHHHHHHHHcCCEE
Q 041957 38 REMWP---SLISKAKEGGLDVIQTY-VFWNL-----HEPQPGK-Y-------------DFSGRRDLVRFIKEIQAQGLYA 94 (734)
Q Consensus 38 ~~~W~---~~l~k~ka~G~N~v~~y-v~W~~-----hEp~~G~-~-------------df~g~~dl~~fl~~a~~~gl~v 94 (734)
.+.|+ +.|.-+|++|+|+|-+- ++-+. |--.+-. | .|....+|+++++.|+++||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35675 56788899999999865 44322 2211111 1 2345679999999999999999
Q ss_pred EEee
Q 041957 95 SIRI 98 (734)
Q Consensus 95 ilr~ 98 (734)
||-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9876
No 59
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=80.55 E-value=4.6 Score=44.22 Aligned_cols=62 Identities=19% Similarity=0.332 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-------eeCcccCCcCCeeeec-C-chhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTY-------VFWNLHEPQPGKYDFS-G-RRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~y-------v~W~~hEp~~G~~df~-g-~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.++.-++.|+.+|+.|+|+|-+= |.+..-.|..-+..-. . ..|+.++++.++++|||+|.|.
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 34667899999999999999753 4454444433222211 1 2699999999999999999998
No 60
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=80.24 E-value=3.6 Score=44.64 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=50.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCCc-CCeeeecCc--hhHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGR--RDLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~-~G~~df~g~--~dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
..+..++.++++|+.||.+=.+.+-..++... -+.|.|.-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 56678899999999998876666654444332 246666533 28999999999999999999877774
No 61
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.90 E-value=3 Score=49.02 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEEc-ee-------Cccc-----CCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 43 SLISKAKEGGLDVIQTY-VF-------WNLH-----EPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 43 ~~l~k~ka~G~N~v~~y-v~-------W~~h-----Ep~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
++|..+|++|+|+|..- |+ |.+. .+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46889999999999853 42 4322 1111 35566799999999999999999875
No 62
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=79.69 E-value=3.1 Score=50.55 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-ee-------CcccCC---cCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 39 EMWPSLISKAKEGGLDVIQTY-VF-------WNLHEP---QPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~y-v~-------W~~hEp---~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
+.|++.|..+|++|+|+|++- |+ |.++-. .+ .-.|.+..+|.+|++.|+++||.|||-.=
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 447888999999999999854 22 433311 01 11355567999999999999999998753
No 63
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=79.54 E-value=14 Score=39.15 Aligned_cols=58 Identities=21% Similarity=0.384 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE-Eee
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS-IRI 98 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi-lr~ 98 (734)
..-|++.|+.++++|++.|++.+ +.. ...+...+++ ...+..+.++++++||.|. +.+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~ 73 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCL 73 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeec
Confidence 46699999999999999999953 222 2223445554 3478899999999999975 444
No 64
>PRK12313 glycogen branching enzyme; Provisional
Probab=78.39 E-value=3.8 Score=49.18 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=37.8
Q ss_pred HHHHHHcCCCEEEE-cee-------CcccCC--cCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 45 ISKAKEGGLDVIQT-YVF-------WNLHEP--QPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 45 l~k~ka~G~N~v~~-yv~-------W~~hEp--~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
|..+|++|+|+|.. +|+ |.+.-. ..=.-.|.+..+|.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999994 343 321100 0001135566799999999999999999975
No 65
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=78.15 E-value=17 Score=39.19 Aligned_cols=71 Identities=14% Similarity=0.289 Sum_probs=51.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCC--------cCCeeeecCc--hhHHHHHHHHHHcCCEEEEe
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEP--------QPGKYDFSGR--RDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp--------~~G~~df~g~--~dl~~fl~~a~~~gl~vilr 97 (734)
+|..|. +.+.-++.++++|+.||-+=.+++-..+|.- .-+.|+|+-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 444553 5566788999999999988887775444432 2356777643 39999999999999999988
Q ss_pred eCcc
Q 041957 98 IGPF 101 (734)
Q Consensus 98 ~GPy 101 (734)
.=|+
T Consensus 94 v~P~ 97 (292)
T cd06595 94 LHPA 97 (292)
T ss_pred eCCC
Confidence 7443
No 66
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.31 E-value=3.8 Score=48.20 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHcCCCEEEEc-eeCcccCCcCCeee----------ecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 40 MWPSLISKAKEGGLDVIQTY-VFWNLHEPQPGKYD----------FSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~y-v~W~~hEp~~G~~d----------f~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
-+.+.|..+|++|+|+|-+- ++=+- +. ..-|| |.+..+|.+|++.|+++||+|||-.=
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~-~~-~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSP-QK-DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCC-CC-CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 36688999999999999865 33221 10 01222 44567999999999999999998763
No 67
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=76.05 E-value=2 Score=48.89 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=95.9
Q ss_pred eEEECCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCccc-CC---cCCeeee-cCchhHHHHHHHHHHc
Q 041957 16 SLIINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLH-EP---QPGKYDF-SGRRDLVRFIKEIQAQ 90 (734)
Q Consensus 16 ~~~~dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~h-Ep---~~G~~df-~g~~dl~~fl~~a~~~ 90 (734)
.|.++++++..++..-.+.++-.++-+++|+.|+-+|++++++. .+- |+ ++|.-+- ++..-++.|++.|..+
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37777777777766666666666667788999999999999987 444 55 3343322 2345789999999999
Q ss_pred CCEEEEeeCccccccccCCCC---Cccccc-CCCc-----cccCCChhHH-HHHHHHhhcCCCEEEEcccccccceeccc
Q 041957 91 GLYASIRIGPFIQSEWSYGGL---PFWLHD-VPGI-----TFRCDNEPFK-KMKRLYASQGGPIILSQIENEYQMVENAF 160 (734)
Q Consensus 91 gl~vilr~GPyi~aE~~~Gg~---P~Wl~~-~p~~-----~~R~~~~~y~-~~~~~~~~~ggpiI~~QiENEyg~~~~~~ 160 (734)
+|+|+++. |.+==.+||. -.|.-. .|+- ++|.+...|- .+.+ -|+....|.+|-+-|| .... -
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk-~yk~~ptI~gw~l~Ne--~lv~-~ 152 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVK-PYKLDPTIAGWALRNE--PLVE-A 152 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhh-hhccChHHHHHHhcCC--cccc-c
Confidence 99998875 4332234554 223311 2321 2333333332 1111 1467888999999999 2211 1
Q ss_pred CCCChHHHHHHHHHHH
Q 041957 161 GERGPPYIKWAAEMAV 176 (734)
Q Consensus 161 ~~~~~~y~~~l~~~~~ 176 (734)
...+..+++|+++++-
T Consensus 153 p~s~N~f~~w~~emy~ 168 (587)
T COG3934 153 PISVNNFWDWSGEMYA 168 (587)
T ss_pred cCChhHHHHHHHHHHH
Confidence 1346789999999964
No 68
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=74.98 E-value=7.5 Score=49.99 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-cee-Cc---ccCCcCCeee----e----cCchhHHHHHHHHHHc-CCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQT-YVF-WN---LHEPQPGKYD----F----SGRRDLVRFIKEIQAQ-GLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~-yv~-W~---~hEp~~G~~d----f----~g~~dl~~fl~~a~~~-gl~vilr~ 98 (734)
+-+.|++.|+.+|++|.|+|-. +++ =. ..--..+.+. | .+..||.++++.|++. ||++|+-.
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4477999999999999999974 343 11 0001112221 3 3567999999999996 99999864
No 69
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=73.97 E-value=6.3 Score=46.50 Aligned_cols=55 Identities=15% Similarity=0.305 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCEEEEc-eeCcccCCcC-Cee----------eecCchhHHHHHHHHHHcCCEEEEee
Q 041957 41 WPSLISKAKEGGLDVIQTY-VFWNLHEPQP-GKY----------DFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 41 W~~~l~k~ka~G~N~v~~y-v~W~~hEp~~-G~~----------df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.++|..+|++|+++|-+- ++-. |.. .-| +|....+|+++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5588999999999999764 4421 211 122 24456799999999999999999876
No 70
>PLN02960 alpha-amylase
Probab=73.60 E-value=6.6 Score=48.34 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEc-ee-------CcccCC--cCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTY-VF-------WNLHEP--QPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~y-v~-------W~~hEp--~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
++.|.-+|++|+|+|+.- |+ |.+.-- ..=.-.|.+..+|.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 346899999999999964 43 432110 0001124456799999999999999999875
No 71
>PRK09505 malS alpha-amylase; Reviewed
Probab=73.27 E-value=5.8 Score=47.98 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCCEEEEc-eeCcccCCc----CC------------------eeeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 41 WPSLISKAKEGGLDVIQTY-VFWNLHEPQ----PG------------------KYDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 41 W~~~l~k~ka~G~N~v~~y-v~W~~hEp~----~G------------------~~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
+.+.|.-+|++|+|+|-+- ++=+.|... .| .-.|....+|+++++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 5678899999999999853 543333211 11 112455679999999999999999988
Q ss_pred e
Q 041957 98 I 98 (734)
Q Consensus 98 ~ 98 (734)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 6
No 72
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=72.45 E-value=7.1 Score=45.92 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHcCCCEEEEc-eeCcccCCc-CCee---e-------ecCchhHHHHHHHHHHcCCEEEEee
Q 041957 40 MWPSLISKAKEGGLDVIQTY-VFWNLHEPQ-PGKY---D-------FSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~y-v~W~~hEp~-~G~~---d-------f~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
-+.+.|.-+|++|+|+|-+- |+ .. +. ..-| | |.+..+++++++.|+++||+|||-.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36788999999999999865 33 11 11 1112 2 4556799999999999999999864
No 73
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=72.15 E-value=6.4 Score=46.99 Aligned_cols=55 Identities=25% Similarity=0.504 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEEc-ee---------------CcccC-----CcCCee----eec--CchhHHHHHHHHHHcCCEEE
Q 041957 43 SLISKAKEGGLDVIQTY-VF---------------WNLHE-----PQPGKY----DFS--GRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 43 ~~l~k~ka~G~N~v~~y-v~---------------W~~hE-----p~~G~~----df~--g~~dl~~fl~~a~~~gl~vi 95 (734)
+.|.-+|++|+|+|..- |+ |.+.- |+ +.| .|- ...+|++|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 45899999999999853 33 33321 11 011 010 12689999999999999999
Q ss_pred Eee
Q 041957 96 IRI 98 (734)
Q Consensus 96 lr~ 98 (734)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 74
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=71.90 E-value=14 Score=30.18 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEE
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASI 96 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vil 96 (734)
|..-.+.++.+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4567788999999999999999832 333 58887765 4778999999999988754
No 75
>PRK05402 glycogen branching enzyme; Provisional
Probab=71.42 E-value=7.5 Score=47.45 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=36.9
Q ss_pred HHHHHHcCCCEEEEc-ee-------CcccCCcCCe-----eeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 45 ISKAKEGGLDVIQTY-VF-------WNLHEPQPGK-----YDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 45 l~k~ka~G~N~v~~y-v~-------W~~hEp~~G~-----~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
|.-+|++|+|+|..- |+ |.+ .+.. -.|.+..+|.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY---~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGY---QPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC---CcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 366799999999854 43 221 1111 124556799999999999999999974
No 76
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=70.56 E-value=9.1 Score=45.13 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=49.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-eeCcccCCcCCee--------eecCc----hhHHHHHHHHHHcCCEEEEeeCcccccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTY-VFWNLHEPQPGKY--------DFSGR----RDLVRFIKEIQAQGLYASIRIGPFIQSE 105 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~y-v~W~~hEp~~G~~--------df~g~----~dl~~fl~~a~~~gl~vilr~GPyi~aE 105 (734)
+.=++.|..|+...||.|+.| ..|.+|.|-|+.= |+.++ .-++..|+.|++.|++++.=--=|.+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456789999999999999999 7799999977543 23332 2688999999999999885543333323
Q ss_pred c--cCCCCCccccc
Q 041957 106 W--SYGGLPFWLHD 117 (734)
Q Consensus 106 ~--~~Gg~P~Wl~~ 117 (734)
. ..|-.|.|-+-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 36677999864
No 77
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=69.98 E-value=7.3 Score=41.35 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=54.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCee--eecC--chhHHHHHHHHHHcCCEEEEeeCccc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKY--DFSG--RRDLVRFIKEIQAQGLYASIRIGPFI 102 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~--df~g--~~dl~~fl~~a~~~gl~vilr~GPyi 102 (734)
+|..|. ..+..++.++++++.||-.=.+.+-+.+.+. .+.| +|.- --|..++++.+++.|++|+|..=|+|
T Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 13 YWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 344454 5666888999999999997777777665553 4666 5542 23899999999999999999999988
No 78
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=69.89 E-value=5.5 Score=41.98 Aligned_cols=95 Identities=7% Similarity=-0.121 Sum_probs=66.1
Q ss_pred ceeeeeecCc-eEEEEcCCCCeEEEEeeeccCCCC---CCCCCCC--cccccccCCChHHHHHHHcCCCCccEEeeCCCC
Q 041957 635 SITLEKLEAK-VVHLQCAPTWYITKILFASYGTPF---GGCGRDG--HAIGYCDSPNSKFAAEKACLGKRSCLIPASDQF 708 (734)
Q Consensus 635 ~I~~~t~Ce~-~~~L~C~~g~~I~~I~~A~YGr~~---~~C~~~~--~~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~ 708 (734)
.++-++.|.. ++...|+....+. +..+.+++.+ ..|+... ...-.|.....+..+...|.+++.|++..++.-
T Consensus 133 ~~~~kt~~~p~~~~~~~~~~~~~~-~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~ 211 (265)
T KOG4729|consen 133 AFTEKTFCTPSPTDPPRSEIRLEC-REGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIK 211 (265)
T ss_pred ccccceEecCCCCCCccCcccchh-hhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcc
Confidence 3343445554 7777777776554 7777777755 2455431 222234445678889999999999999999998
Q ss_pred ccCCCCC-CCceEEEEEEEEecCC
Q 041957 709 FDGDPCP-SKKKSLIVEAHCGPIS 731 (734)
Q Consensus 709 Fg~DPC~-gt~KyL~V~y~C~~~~ 731 (734)
++ -+|- +-.+|+-|.+.|.++.
T Consensus 212 ~~-~~~~~~~~~~~~~n~e~~~~~ 234 (265)
T KOG4729|consen 212 GH-CRHGHLHKVYVTVTEEIFSEE 234 (265)
T ss_pred cc-ccccceeEEEEEecccccchh
Confidence 87 6775 4468999999988764
No 79
>PRK12568 glycogen branching enzyme; Provisional
Probab=68.51 E-value=9.6 Score=46.33 Aligned_cols=54 Identities=15% Similarity=0.342 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCEEEEc-ee-------Cccc-----CCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCc
Q 041957 44 LISKAKEGGLDVIQTY-VF-------WNLH-----EPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGP 100 (734)
Q Consensus 44 ~l~k~ka~G~N~v~~y-v~-------W~~h-----Ep~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GP 100 (734)
.|.-+|++|+|+|+.- |+ |.+- .|.+ .|.+..+|.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4678899999999853 42 4321 1111 3555679999999999999999997543
No 80
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=68.35 E-value=13 Score=30.91 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=24.1
Q ss_pred CcceEEEEEECCEEEEEEeccccC--ceeEEEee
Q 041957 436 SLGHVLHAFVNGVPVGSAHGSYKN--TSFTLQTD 467 (734)
Q Consensus 436 ~~~D~~~Vfvng~~vG~~~~~~~~--~~~~~~~~ 467 (734)
...|.|.||++++|+|++.+.... .++.|++.
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 568999999999999999976433 44555443
No 81
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=68.05 E-value=23 Score=35.18 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=30.1
Q ss_pred eeEeCCcceEEEEEECCEEEEEEe----cc-ccCce--eEEEeeeecCCCccEEEEEEecCCc
Q 041957 431 QLSVHSLGHVLHAFVNGVPVGSAH----GS-YKNTS--FTLQTDFSLSNGINNVSLLSVMVGL 486 (734)
Q Consensus 431 ~L~v~~~~D~~~Vfvng~~vG~~~----~~-~~~~~--~~~~~~~~l~~g~~~L~ILven~Gr 486 (734)
.|.|... .+..+||||+.||... .+ ..... .++++.--|+.|.|+|.|++-+...
T Consensus 7 ~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 7 RLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 4554433 3677999999999644 11 11111 2344443488899999999976443
No 82
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=67.39 E-value=9.5 Score=33.41 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=33.5
Q ss_pred ceeEeCCcceEEEEEECCEEEEEEeccccCceeEEEeeeec-CCCccEEEEEEecCCcc
Q 041957 430 AQLSVHSLGHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSL-SNGINNVSLLSVMVGLP 487 (734)
Q Consensus 430 ~~L~v~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 487 (734)
..|++.+-...++-||||+++|...... .+.+ .+ ..|.++|++ +...|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 3455544466999999999998875432 1223 24 678899988 7777764
No 83
>PRK10785 maltodextrin glucosidase; Provisional
Probab=67.38 E-value=11 Score=45.05 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEEc-eeCc--ccCCcCCee-----eecCchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTY-VFWN--LHEPQPGKY-----DFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~y-v~W~--~hEp~~G~~-----df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.+.|.-+|++|+|+|-+- ||=+ .|---...| .|.+..+|++|++.|+++||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467899999999999854 5522 121111111 24566799999999999999999865
No 84
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=66.12 E-value=11 Score=41.14 Aligned_cols=72 Identities=15% Similarity=0.255 Sum_probs=54.0
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCC--eeeecCch--hHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPG--KYDFSGRR--DLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G--~~df~g~~--dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+|..|. ..+.-++.++++++.||-+=.+.+-|.... ..+ .|+|+-.+ |..++|+..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 344454 455567899999999998877777666554 344 77776443 9999999999999999988766663
No 85
>PLN02361 alpha-amylase
Probab=65.94 E-value=13 Score=42.25 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCcccCC---cCCe-e----eecCchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLHEP---QPGK-Y----DFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~hEp---~~G~-~----df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.+.|..+|++|+++|-+.=+.....+ .+.. | .|....+|+++|+.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 35677889999999987744332221 1221 2 24456799999999999999999865
No 86
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=65.18 E-value=6.6 Score=32.73 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=28.1
Q ss_pred eeEeCCcceEEEEEECCEEEEEEeccccCceeEEEeeeecCCCccEEEEEEecCCcc
Q 041957 431 QLSVHSLGHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSLSNGINNVSLLSVMVGLP 487 (734)
Q Consensus 431 ~L~v~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~ 487 (734)
.|.|...-..|.|||||+++|... .++ . .++.|.++|.| +.-|..
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~--~-~l~~G~~~v~v--~~~Gy~ 47 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTL--K-DLPPGEHTVTV--EKPGYE 47 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------cee--e-ecCCccEEEEE--EECCCe
Confidence 456666667899999999999432 112 1 15577666655 444433
No 87
>PRK14706 glycogen branching enzyme; Provisional
Probab=65.18 E-value=11 Score=45.19 Aligned_cols=54 Identities=9% Similarity=0.170 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEEc-ee-------CcccCC--cCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 45 ISKAKEGGLDVIQTY-VF-------WNLHEP--QPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 45 l~k~ka~G~N~v~~y-v~-------W~~hEp--~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.-+|++|+|+|+.- |. |.+.-- ..=.-.|.+..+|.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 366899999999943 31 332110 0001123455799999999999999999875
No 88
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=64.76 E-value=5.7 Score=39.47 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=26.7
Q ss_pred CCceEEEEECCeeceeccc-cccCC---------CCCCceeeeccCCCccCCCCcEEEEEEecC
Q 041957 577 GMRKGEARVNGRSIGRYWP-SLITP---------RGEPSQISYNIPRSFLKPTGNLLVLLEEEG 630 (734)
Q Consensus 577 g~gKG~v~VNG~nlGRYW~-~~~~~---------~gGPQqtlYhVP~~~Lk~g~N~ivifEe~g 630 (734)
..++=+|.||| ..+..+. ....+ +|-.+.--+.||+.+|++|.|+|.|=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34666899999 7777663 22111 255555556689999999999997644444
No 89
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=64.73 E-value=12 Score=41.34 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=56.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCch--hH--HHHHHHHHHcCCEEEEeeCcccc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRR--DL--VRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~--dl--~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+|..|+ ..+.-++.++++++.+|.+=.+.+-+.+++. .+.|.|...+ |. +++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455564 4566889999999999988777776555543 4677776543 77 99999999999999998877775
Q ss_pred c
Q 041957 104 S 104 (734)
Q Consensus 104 a 104 (734)
.
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 3
No 90
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.09 E-value=14 Score=40.35 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=51.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCC-----cCCeeeecCch--hHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEP-----QPGKYDFSGRR--DLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-----~~G~~df~g~~--dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
..+..++.++++|+.||-+=.+.+-+.++.. .-|.|+|.-.+ |..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999987777776444442 23567765333 8999999999999999998877764
No 91
>PRK14705 glycogen branching enzyme; Provisional
Probab=63.44 E-value=13 Score=47.70 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCEEEEc-ee-------CcccC--CcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 44 LISKAKEGGLDVIQTY-VF-------WNLHE--PQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 44 ~l~k~ka~G~N~v~~y-v~-------W~~hE--p~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.|.-+|++|+|+|+.- |+ |.+-- ...=.-.|.+..||..|++.|+++||.|||-.
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3688999999999853 42 43210 00001134556799999999999999999874
No 92
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=63.31 E-value=14 Score=45.38 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=44.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCcc-----cCCc-----CCeeeecCchhHHHHHHHHHHcCCEEEEeeCc
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFWNL-----HEPQ-----PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGP 100 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W~~-----hEp~-----~G~~df~g~~dl~~fl~~a~~~gl~vilr~GP 100 (734)
-+-|.+.|.-++++|+++|-+-=++.. |--. .=.-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 355889999999999999965432221 1100 00113557789999999999999999988644
No 93
>PLN00196 alpha-amylase; Provisional
Probab=63.24 E-value=16 Score=41.82 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCcc---cCCcCCe-ee-----ecCchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNL---HEPQPGK-YD-----FSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~---hEp~~G~-~d-----f~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.+.|..+|++|+++|-+.=...- |--.+.. |+ |....+|+++++.|+++||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 47788899999999987733322 2112211 22 3345699999999999999999875
No 94
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=62.97 E-value=9 Score=38.05 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=32.8
Q ss_pred EEeeCCCceEEEEECCeeceeccccccCCCCCCceeeecc---CCCccCCCCcEEEEEEecC
Q 041957 572 ALNLNGMRKGEARVNGRSIGRYWPSLITPRGEPSQISYNI---PRSFLKPTGNLLVLLEEEG 630 (734)
Q Consensus 572 ~Ld~~g~gKG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhV---P~~~Lk~g~N~ivifEe~g 630 (734)
.|..++.|+=.+||||+.+|+--..=. ...-+...+| . =.++|++|+|.|.|.=..|
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~P~-~t~y~~~~~Y-~tyDVt~~L~~G~N~iav~lg~g 66 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLAPG-WTDYDKRVYY-QTYDVTPYLRPGENVIAVWLGNG 66 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE---------BTTEEEE-EEEE-TTT--TTEEEEEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCccccc-cccCCCceEE-EEEeChHHhCCCCCEEEEEEeCC
Confidence 466777888899999999997541000 0001232333 3 2779999999999864433
No 95
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.73 E-value=38 Score=35.62 Aligned_cols=52 Identities=17% Similarity=0.060 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
.-|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEE
Confidence 359999999999999999984211 011001 122 2478889999999999976
No 96
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=62.71 E-value=12 Score=40.73 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CcccCC----------------cCCeeeecCchhHHHHHHHHHHcCCEEEE
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF----WNLHEP----------------QPGKYDFSGRRDLVRFIKEIQAQGLYASI 96 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~----W~~hEp----------------~~G~~df~g~~dl~~fl~~a~~~gl~vil 96 (734)
+.+..++.|+.|-..++|++..++- |.+--+ ..|.|.- .++.++++.|+++|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 5688899999999999999999988 765422 1233433 4999999999999999995
Q ss_pred ee
Q 041957 97 RI 98 (734)
Q Consensus 97 r~ 98 (734)
-+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 54
No 97
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.26 E-value=12 Score=39.62 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++..+.++++++||.|.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIP 69 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCce
Confidence 36999999999999999999642 2222 11122343 3478999999999999876
No 98
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=60.39 E-value=18 Score=44.92 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCe------ee-------ecCchhHHHHHHHHHHcCCEEEEeeCcc
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGK------YD-------FSGRRDLVRFIKEIQAQGLYASIRIGPF 101 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~------~d-------f~g~~dl~~fl~~a~~~gl~vilr~GPy 101 (734)
+-+-+.+.|.-++++|+|+|-+-=+. +..+|. .| |.+..+|.+|++.|+++||.|||-.=|-
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34568999999999999999765322 112221 12 4467899999999999999999987553
No 99
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=60.23 E-value=16 Score=40.27 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=54.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCch--hHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRR--DLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~--dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+|..|. ..+.-++.++++++.||.+=.+.+-+.+. ...+.|+|+-.+ |...+++..++.|++|++..=|+|+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~ 89 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 345554 45556788999999999887777664432 355677776433 8999999999999999999888875
No 100
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=60.08 E-value=13 Score=48.08 Aligned_cols=56 Identities=25% Similarity=0.481 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEEc-eeCcccCCc---CCe-----ee----------ec--CchhHHHHHHHHHHcCCEEEEee
Q 041957 43 SLISKAKEGGLDVIQTY-VFWNLHEPQ---PGK-----YD----------FS--GRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 43 ~~l~k~ka~G~N~v~~y-v~W~~hEp~---~G~-----~d----------f~--g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.|.-+|++|+|+|..- |+=...|.. .|. || |. +..+|.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 45669999999999953 542222211 110 21 33 66799999999999999999975
No 101
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=59.66 E-value=3.9 Score=42.61 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
-...+++.++|.+.|.+.++|....+..-.+... .+.++.+.|++.||+|||.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEEE
Confidence 5568899999999999999997766555444444 89999999999999999993
No 102
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=58.98 E-value=23 Score=39.91 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=43.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
..+.|+++|+.+|++||+....-+- ....+.- ..|...++.|++.|.+++|-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7788999999999999999888765 1222222 378899999999999999998
No 103
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=58.91 E-value=18 Score=47.91 Aligned_cols=61 Identities=20% Similarity=0.356 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCe---e----------eecCchhHHHHHHHHHHcCCEEEEeeCc
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGK---Y----------DFSGRRDLVRFIKEIQAQGLYASIRIGP 100 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~---~----------df~g~~dl~~fl~~a~~~gl~vilr~GP 100 (734)
+-+-|.+.|.-+|++|+|+|-+-=++. ..+|. | .|.+..+|++|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~---a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILK---ARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcC---CCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 446699999999999999997653332 22221 2 2456789999999999999999988744
No 104
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=58.48 E-value=19 Score=38.96 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=42.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee---CcccCCcCCee--------eecCchhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF---WNLHEPQPGKY--------DFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~---W~~hEp~~G~~--------df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.+..-+++++.+|..++|++-+=+= =++.-|....+ .|- |+..||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 5566789999999999999865432 11111222221 233 99999999999999999997
No 105
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=57.47 E-value=36 Score=37.71 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=60.9
Q ss_pred eeEEEeCCeEEECCEEeEEEEEeeeCCCC-CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecC--chhHHHHH
Q 041957 8 GEVTYDGRSLIINGERKVLFSGSIHYPRS-PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSG--RRDLVRFI 84 (734)
Q Consensus 8 ~~v~~d~~~~~~dg~~~~~~~G~~hy~r~-~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g--~~dl~~fl 84 (734)
+.|.+. .+.+.|.+++++.| +--+ .++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.
T Consensus 80 t~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~ 150 (335)
T PRK08673 80 TVVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLA 150 (335)
T ss_pred CEEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHH
Confidence 344453 36677788888888 3333 45667778888999999999999983 5555578875 56787778
Q ss_pred HHHHHcCCEEEEee
Q 041957 85 KEIQAQGLYASIRI 98 (734)
Q Consensus 85 ~~a~~~gl~vilr~ 98 (734)
+.|++.||.++-.+
T Consensus 151 ~~~~~~Gl~v~tev 164 (335)
T PRK08673 151 EAREETGLPIVTEV 164 (335)
T ss_pred HHHHHcCCcEEEee
Confidence 88999999988766
No 106
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.29 E-value=26 Score=38.03 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=51.2
Q ss_pred CCCCcccHHHHHHHHHHcCCC--EEEEceeCcccCCcCCeeeecC--chhHHHHHHHHHHcCCEEEEeeCccccc
Q 041957 34 PRSPREMWPSLISKAKEGGLD--VIQTYVFWNLHEPQPGKYDFSG--RRDLVRFIKEIQAQGLYASIRIGPFIQS 104 (734)
Q Consensus 34 ~r~~~~~W~~~l~k~ka~G~N--~v~~yv~W~~hEp~~G~~df~g--~~dl~~fl~~a~~~gl~vilr~GPyi~a 104 (734)
.....+.-++.++++++.|+. +|-+=+.|- ..-|.|.|.- --|...+++..++.|+++++..=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 446777789999999999975 444434453 3457776653 2389999999999999999998888753
No 107
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=57.27 E-value=19 Score=39.31 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=54.0
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGR--RDLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~--~dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+|..|. ..+.-++.++++++.+|-.=.+.+-+.+.. ..+.|+|+.. -|..++++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 455554 556678999999999998777776644433 3467777543 38999999999999999988877764
No 108
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=55.75 E-value=17 Score=38.63 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=43.8
Q ss_pred ccccccccCCC---CCCCceEEEEEEeCCCCCC-----CCceeEeCCcceEEEEEECCEEEEEEec
Q 041957 398 SDTLLEHTDTT---KDTSDYLWYSFSFQPEPSD-----TRAQLSVHSLGHVLHAFVNGVPVGSAHG 455 (734)
Q Consensus 398 ~p~~mEql~~t---~d~~GyllY~t~i~~~~~~-----~~~~L~v~~~~D~~~Vfvng~~vG~~~~ 455 (734)
.|.++-.+++. +|..|.+||+-++.++++. +...|++.+++-.|.|||||.-+=...+
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 34556666664 4678999999999876532 4568889999999999999987655443
No 109
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.50 E-value=27 Score=38.15 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCC---cCCeeeecCc--hhHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEP---QPGKYDFSGR--RDLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp---~~G~~df~g~--~dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+.-++.++++++.+|-+=.+.+-+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 45678899999999988777765443332 1234666432 38999999999999999999888875
No 110
>PRK03705 glycogen debranching enzyme; Provisional
Probab=55.43 E-value=19 Score=43.50 Aligned_cols=55 Identities=18% Similarity=0.385 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCEEEEc-eeCcccCCcC---C-----eee----------ecCc-----hhHHHHHHHHHHcCCEEEEee
Q 041957 44 LISKAKEGGLDVIQTY-VFWNLHEPQP---G-----KYD----------FSGR-----RDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 44 ~l~k~ka~G~N~v~~y-v~W~~hEp~~---G-----~~d----------f~g~-----~dl~~fl~~a~~~gl~vilr~ 98 (734)
.|.-+|++|+|+|..- |+=...+++. | -|| |... .+|+++++.|+++||+|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 4889999999999853 4311111110 1 011 2222 479999999999999999986
No 111
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.98 E-value=22 Score=36.96 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEE
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASI 96 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vil 96 (734)
-+++.+++++++|++.|+....+ ..+++.+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999985422 13688999999999999764
No 112
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=54.28 E-value=24 Score=38.84 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=53.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCch--hHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRR--DLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~--dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+|..|. ..+..++.++++++.||-+=.+.+-+.+.. .-+.|+|.-.+ |...+++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455554 456678999999999998766666555443 34557765433 7899999999999999998877775
No 113
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.05 E-value=60 Score=34.78 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=60.8
Q ss_pred eeEEEeCCeEEECCEEeEEEEEeeeCCCC-CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeec--CchhHHHHH
Q 041957 8 GEVTYDGRSLIINGERKVLFSGSIHYPRS-PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFS--GRRDLVRFI 84 (734)
Q Consensus 8 ~~v~~d~~~~~~dg~~~~~~~G~~hy~r~-~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~--g~~dl~~fl 84 (734)
..|.+. .+.+.+.+++++.|=- -+ .++.-.+.-+++|++|+..++.|.|= |+---+.|. |...+..+-
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPC---sie~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l~ 84 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPC---AVESEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKILK 84 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCC---cCCCHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHHH
Confidence 344443 3666666888888832 22 46777888999999999999999875 433334666 577899999
Q ss_pred HHHHHcCCEEEEee
Q 041957 85 KEIQAQGLYASIRI 98 (734)
Q Consensus 85 ~~a~~~gl~vilr~ 98 (734)
+.|++.||.++-.|
T Consensus 85 ~~~~~~Gl~~~te~ 98 (266)
T PRK13398 85 EVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999988776
No 114
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=53.91 E-value=21 Score=37.70 Aligned_cols=52 Identities=21% Similarity=0.472 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566789999999999999987 35666654 34778999999999999998887
No 115
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=52.35 E-value=27 Score=36.76 Aligned_cols=51 Identities=14% Similarity=0.367 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
...++-++.+|++||++|++ ..|..+++ ..+..++|+.++++||+|+--.|
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEecccc
Confidence 56777888999999999976 46777765 44788999999999999997776
No 116
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=52.21 E-value=22 Score=40.48 Aligned_cols=66 Identities=15% Similarity=0.365 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGR--RDLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~--~dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
..+...+.++.+++.++-.=.+.+-..+.. ..+.|.|+.. -|+..+++.+++.|++|++..-|+|.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~ 108 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVS 108 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEE
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccC
Confidence 355667899999999998877776644333 4556666543 28999999999999999999877764
No 117
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=50.87 E-value=33 Score=37.89 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=57.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCch--hHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRR--DLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~--dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+|..|+ ..+..++.++++++.+|-.=.+++-|.+++ .-+.|.|...+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 566664 567788999999999998888887777664 34677776433 8899999999999999998888886
No 118
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=50.72 E-value=25 Score=44.81 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCCEEEEee
Q 041957 78 RDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 78 ~dl~~fl~~a~~~gl~vilr~ 98 (734)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999985
No 119
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=49.75 E-value=30 Score=41.40 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEEc-ee-------CcccCCcCCeee------ecCchhHHHHHHHHHHcCCEEEEe
Q 041957 42 PSLISKAKEGGLDVIQTY-VF-------WNLHEPQPGKYD------FSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~y-v~-------W~~hEp~~G~~d------f~g~~dl~~fl~~a~~~gl~vilr 97 (734)
.+.|..+|++|+++|+.- |. |.+- |+.- |..-.||.+||+.|+++||-|||-
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 567889999999999953 32 5431 2222 334469999999999999999986
No 120
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=48.56 E-value=4.5e+02 Score=29.73 Aligned_cols=243 Identities=13% Similarity=0.091 Sum_probs=116.6
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEE-------ceeCcccCCcCCeeeec-CchhHHHHHHHHHHcCCEEEEeeCccc
Q 041957 31 IHYPRSPREMWPSLISKAKEGGLDVIQT-------YVFWNLHEPQPGKYDFS-GRRDLVRFIKEIQAQGLYASIRIGPFI 102 (734)
Q Consensus 31 ~hy~r~~~~~W~~~l~k~ka~G~N~v~~-------yv~W~~hEp~~G~~df~-g~~dl~~fl~~a~~~gl~vilr~GPyi 102 (734)
+.+.+.+++.|- +.+|++|+.-|-. +-.|......-..-+-. ++--|.+|.+.|+++||++-| |-
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~ 148 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YH 148 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----Ec
Confidence 444556667674 5788899886643 22255543321111111 223567889999999997766 43
Q ss_pred c-ccccCCCCCcccccCCCccccCCChh---HH-----HHHHHHhhcCCCEEEEcccccccceecccCCCChH-HHHHHH
Q 041957 103 Q-SEWSYGGLPFWLHDVPGITFRCDNEP---FK-----KMKRLYASQGGPIILSQIENEYQMVENAFGERGPP-YIKWAA 172 (734)
Q Consensus 103 ~-aE~~~Gg~P~Wl~~~p~~~~R~~~~~---y~-----~~~~~~~~~ggpiI~~QiENEyg~~~~~~~~~~~~-y~~~l~ 172 (734)
. -+|.. |.|....+.-..+.+.+. |. ++++|+- +=||-|+|- +...+. .... -++.|.
T Consensus 149 S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit-~Ygpd~lWf-D~~~~~-------~~~~~~~~~l~ 216 (384)
T smart00812 149 SLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVT-RYKPDLLWF-DGGWEA-------PDDYWRSKEFL 216 (384)
T ss_pred CHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHh-cCCCceEEE-eCCCCC-------ccchhcHHHHH
Confidence 3 36653 555321110011222233 33 6666653 334555552 222111 1111 245677
Q ss_pred HHHHhcCCcc-ceEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCceee-ecccccccccCC-CCCCCCHHHHHHHHH
Q 041957 173 EMAVGLQTGV-PWVMCKQDDAPDPVINACNGRKCGETFKGPNSPNKPSIWT-ENWTSRYQAYGE-DPIGRTADDIAFHVA 249 (734)
Q Consensus 173 ~~~~~~g~~v-p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~P~~~~-E~~~Gwf~~wG~-~~~~~~~~~~~~~~~ 249 (734)
++++++..+. -.+.++..... .... .....+.+..........|--.. =.-.+|+=+-++ ....++++++...+.
T Consensus 217 ~~~~~~qP~~~~vvvn~R~~~~-~~~~-g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~l~ 294 (384)
T smart00812 217 AWLYNLSPVKDTVVVNDRWGGT-GCKH-GGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRDLV 294 (384)
T ss_pred HHHHHhCCCCceEEEEcccccc-CCCC-CCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHHHh
Confidence 7777764442 11223321100 0000 00001111111000011111000 011233333222 223578999999988
Q ss_pred HHHhhcCeeeeeeEeecccCCCCCCCCCcccccCCCCCCCcCCCCCCchHHHHHHHHHHHHhhcccccC
Q 041957 250 LWVARNGSFVNYYMYHGGTNFGREASAFVTASYYDDAPLDEYGMINQPKWGHLKELHAAIKLCSNTLLL 318 (734)
Q Consensus 250 ~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDY~Api~E~G~~~tpky~~lr~l~~~l~~~~~~~~~ 318 (734)
...++|++++ + | -+-+.+|.+....-..|+++...++..++.+..
T Consensus 295 ~~Vsk~GnlL---L-----N----------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~ 339 (384)
T smart00812 295 DIVSKGGNLL---L-----N----------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAIYG 339 (384)
T ss_pred hhcCCCceEE---E-----c----------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCceeec
Confidence 9889988743 1 1 234567877666778899999999876654443
No 121
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.40 E-value=33 Score=39.00 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=53.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee-------------CcccCCcCCeee-ecCchhHHHHHHHHHHcCCEEEEeeCccc
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF-------------WNLHEPQPGKYD-FSGRRDLVRFIKEIQAQGLYASIRIGPFI 102 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~-------------W~~hEp~~G~~d-f~g~~dl~~fl~~a~~~gl~vilr~GPyi 102 (734)
.+..-.+.|.+++++|||||-.-|- |..-- ||++- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 4566678999999999999974332 43332 44431 22444788999999999999999987776
Q ss_pred cccccCCC---CCccccc
Q 041957 103 QSEWSYGG---LPFWLHD 117 (734)
Q Consensus 103 ~aE~~~Gg---~P~Wl~~ 117 (734)
-|--..-. .|.|+..
T Consensus 140 ~a~~~s~~~~~~p~~~~~ 157 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTT 157 (418)
T ss_pred cCCCCChhHhhCCCCccc
Confidence 54321111 2666655
No 122
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=48.12 E-value=27 Score=42.50 Aligned_cols=55 Identities=15% Similarity=0.377 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEEc-ee-C--cccCCcCC-----ee---e-------ec---CchhHHHHHHHHHHcCCEEEEee
Q 041957 44 LISKAKEGGLDVIQTY-VF-W--NLHEPQPG-----KY---D-------FS---GRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 44 ~l~k~ka~G~N~v~~y-v~-W--~~hEp~~G-----~~---d-------f~---g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.|.-+|++|+|+|..- |+ . +.+....| -| | |. ...+|.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3778999999999854 44 1 11111111 01 1 21 24689999999999999999986
No 123
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=47.52 E-value=25 Score=40.14 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=15.5
Q ss_pred CCCCCCceEEEEEEEEe
Q 041957 712 DPCPSKKKSLIVEAHCG 728 (734)
Q Consensus 712 DPC~gt~KyL~V~y~C~ 728 (734)
|||||-.|-|+|.|+-.
T Consensus 504 dpc~ge~K~L~I~Ytf~ 520 (546)
T KOG0718|consen 504 DPCPGEPKELEIVYTFH 520 (546)
T ss_pred CCCCCCccEEEEEEEEc
Confidence 99999999999999853
No 124
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=47.31 E-value=24 Score=40.34 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCEEEEc-ee---CcccCCcCCee-----eecCchhHHHHHHHHHHcCCEEEEee
Q 041957 43 SLISKAKEGGLDVIQTY-VF---WNLHEPQPGKY-----DFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 43 ~~l~k~ka~G~N~v~~y-v~---W~~hEp~~G~~-----df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.|.-+|++|+++|-+= ++ -..|---.-.| .|.+..|++++++.|+++||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 78999999999999431 22 11111100000 57778899999999999999999764
No 125
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=46.11 E-value=44 Score=33.66 Aligned_cols=87 Identities=17% Similarity=0.314 Sum_probs=54.6
Q ss_pred EeeeCCCCC-----cccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeee--ecC-chhHHHHHHHHHHcCCEEEEeeCc
Q 041957 29 GSIHYPRSP-----REMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYD--FSG-RRDLVRFIKEIQAQGLYASIRIGP 100 (734)
Q Consensus 29 G~~hy~r~~-----~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~d--f~g-~~dl~~fl~~a~~~gl~vilr~GP 100 (734)
|.+||+|.. .++.+.-++.++..++.. ...|--.|..++.+. .+- ...+.+|+++.+++|.++++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 888988753 455777778888765432 112334444334332 111 137889999999999999999988
Q ss_pred ccccc----c---cCCCCCcccccC
Q 041957 101 FIQSE----W---SYGGLPFWLHDV 118 (734)
Q Consensus 101 yi~aE----~---~~Gg~P~Wl~~~ 118 (734)
+-.-. . .....|.|+...
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 52211 1 145689999763
No 126
>PRK01060 endonuclease IV; Provisional
Probab=45.93 E-value=50 Score=34.85 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEE
Q 041957 41 WPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYA 94 (734)
Q Consensus 41 W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~v 94 (734)
+++.|++++++|++.|++.+.- -|.-..+.++- .+++++-++++++||.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCCH---HHHHHHHHHHHHcCCCC
Confidence 8899999999999999996531 12212222222 26888999999999983
No 127
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=45.34 E-value=47 Score=39.84 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-ee-----Cc--ccCCcCCeee---------ecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 37 PREMWPSLISKAKEGGLDVIQTY-VF-----WN--LHEPQPGKYD---------FSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~y-v~-----W~--~hEp~~G~~d---------f~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
.+.+|+ .++++|+++|=+- ++ |. +.--..|-|| |....|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 455665 8889999999754 32 43 2223356666 33346999999999999999997652
Q ss_pred c--------cccccccCCCCCccc
Q 041957 100 P--------FIQSEWSYGGLPFWL 115 (734)
Q Consensus 100 P--------yi~aE~~~Gg~P~Wl 115 (734)
| +.-||+..+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 2 444555544445444
No 128
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=45.10 E-value=49 Score=37.33 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHHcCCCEEEEc----eeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEE
Q 041957 38 REMWPSLISKAKEGGLDVIQTY----VFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASI 96 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~y----v~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vil 96 (734)
+....+++++++++|+..|+.. ++|..-+.+ -..+++++-++++++||.|..
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEE
Confidence 3456799999999999999864 122111100 023578899999999999763
No 129
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=44.03 E-value=47 Score=35.80 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=53.2
Q ss_pred EEEEEeeeCCCCCcc-cHH---HHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCc
Q 041957 25 VLFSGSIHYPRSPRE-MWP---SLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGP 100 (734)
Q Consensus 25 ~~~~G~~hy~r~~~~-~W~---~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GP 100 (734)
+-+++..||..-|.. ..+ ++|++--++|.+-+-|-.+ ||.+ .+.+|++.|+++|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888888764332 232 2444433699999998776 3444 7889999999997664444554
Q ss_pred ccc---------ccccCCCCCccccc
Q 041957 101 FIQ---------SEWSYGGLPFWLHD 117 (734)
Q Consensus 101 yi~---------aE~~~Gg~P~Wl~~ 117 (734)
..+ +||..--+|.|+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~ 222 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMS 222 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHH
Confidence 333 56776667888864
No 130
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=43.96 E-value=33 Score=38.46 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=53.8
Q ss_pred eeeCCC-CCcccHHHHHHHHHHc-CCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 30 SIHYPR-SPREMWPSLISKAKEG-GLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 30 ~~hy~r-~~~~~W~~~l~k~ka~-G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
|+.|+- .|.+.|+-+|.-+.++ -=||+.+-|- |=+.|--++|+-. .|.+++++|+++|+-||.-
T Consensus 173 EVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 173 EVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred eeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 344444 5888899999999987 8899998765 7888888999887 9999999999999999843
No 131
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=43.56 E-value=33 Score=40.14 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=51.5
Q ss_pred CeEEECCEEeEEEEEeeeCC-----CCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHH
Q 041957 15 RSLIINGERKVLFSGSIHYP-----RSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQA 89 (734)
Q Consensus 15 ~~~~~dg~~~~~~~G~~hy~-----r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~ 89 (734)
-.|.+++.|.++-++.--+. |..-+.-+..|+-++++|+|++++. . -|.| .-+.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRVW---G-----GGvY------Esd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRVW---G-----GGVY------ESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEEe---c-----Cccc------cchhHHHHhhh
Confidence 46889999999998876653 2344566778999999999999984 2 2444 34699999999
Q ss_pred cCCEEE
Q 041957 90 QGLYAS 95 (734)
Q Consensus 90 ~gl~vi 95 (734)
.||.|-
T Consensus 394 lGilVW 399 (867)
T KOG2230|consen 394 LGILVW 399 (867)
T ss_pred ccceeh
Confidence 999764
No 132
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=43.28 E-value=1e+02 Score=34.69 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=64.8
Q ss_pred HHcCCCEEEEcee---Cc------------cc---CCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCCC
Q 041957 49 KEGGLDVIQTYVF---WN------------LH---EPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGG 110 (734)
Q Consensus 49 ka~G~N~v~~yv~---W~------------~h---Ep~~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~Gg 110 (734)
|-+|||.++.-|- ++ -. .+..|.|||+.+..=+.||++|++.|...++-+ .--
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecC
Confidence 5689999987664 22 22 245799999977777789999999999988765 234
Q ss_pred CCcccccCCC--------ccccCCC----hhHH-HHHHHHhhcCCCEEEEccccccccee-------cccC-CCChHHHH
Q 041957 111 LPFWLHDVPG--------ITFRCDN----EPFK-KMKRLYASQGGPIILSQIENEYQMVE-------NAFG-ERGPPYIK 169 (734)
Q Consensus 111 ~P~Wl~~~p~--------~~~R~~~----~~y~-~~~~~~~~~ggpiI~~QiENEyg~~~-------~~~~-~~~~~y~~ 169 (734)
.|.|+++... ..||... ..|+ .+++++.+.|=+|=-+=.=||-...- +.+. +...+.++
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~ 207 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIR 207 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHH
Confidence 7899876321 1233322 2355 56666633433444444447754210 0011 12357788
Q ss_pred HHHHHHHhcCCccceEEecC
Q 041957 170 WAAEMAVGLQTGVPWVMCKQ 189 (734)
Q Consensus 170 ~l~~~~~~~g~~vp~~~~~~ 189 (734)
.|.+.+++.|+..-+..|+.
T Consensus 208 ~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 208 ALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHhcCCCceEEecch
Confidence 89999999999876655543
No 133
>PLN02784 alpha-amylase
Probab=43.23 E-value=49 Score=40.95 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEEceeCcccCCcCC--eee-------ecCchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLHEPQPG--KYD-------FSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~hEp~~G--~~d-------f~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.+++..++++|+++|-+.=+.....+ .| .+| |....+|..+|+.|+++||+||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999988754322221 11 122 3345699999999999999999875
No 134
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.56 E-value=52 Score=36.38 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=51.2
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEce----------eCcccCCc---------CCeeeecC---chhHHHHHH
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYV----------FWNLHEPQ---------PGKYDFSG---RRDLVRFIK 85 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv----------~W~~hEp~---------~G~~df~g---~~dl~~fl~ 85 (734)
+|..|. ..+.-++.++++++.||..=.+++ .|+...-. -+.++|.. --|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 455678899999999998777665 24422211 13344431 128999999
Q ss_pred HHHHcCCEEEEeeCcccc
Q 041957 86 EIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 86 ~a~~~gl~vilr~GPyi~ 103 (734)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 135
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.28 E-value=39 Score=36.09 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCEEEEceeCc--ccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 42 PSLISKAKEGGLDVIQTYVFWN--LHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~--~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 5788999999999998876511 122222234554 6667889999999986533
No 136
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=42.22 E-value=27 Score=40.52 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=42.9
Q ss_pred EEeeeCCCCCcccHHHHHHHHH-HcCCCEEEEc-ee---Cccc-C-CcCC--eeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 28 SGSIHYPRSPREMWPSLISKAK-EGGLDVIQTY-VF---WNLH-E-PQPG--KYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 28 ~G~~hy~r~~~~~W~~~l~k~k-a~G~N~v~~y-v~---W~~h-E-p~~G--~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
-|+-|.....++.|+..|+.++ ++||.-|++. +| .... | ..+| .|||+ .||.++|...++||+-++..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3444554556778999999987 7799999864 22 1111 1 1233 29999 99999999999999977766
Q ss_pred C
Q 041957 99 G 99 (734)
Q Consensus 99 G 99 (734)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 5
No 137
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.81 E-value=35 Score=37.92 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CcccCC----------------------------cCCeeeecCchhHHHHH
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF----WNLHEP----------------------------QPGKYDFSGRRDLVRFI 84 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~----W~~hEp----------------------------~~G~~df~g~~dl~~fl 84 (734)
+.+..++.|+.|....+|++..++- |.+--+ ..|.|. ..++++++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 5788999999999999999998874 543211 123343 34999999
Q ss_pred HHHHHcCCEEEEee
Q 041957 85 KEIQAQGLYASIRI 98 (734)
Q Consensus 85 ~~a~~~gl~vilr~ 98 (734)
+.|+++|+.||--+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999654
No 138
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=40.31 E-value=12 Score=32.39 Aligned_cols=36 Identities=25% Similarity=0.544 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHc
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQ 90 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~ 90 (734)
...|-.-++.+-. .||.|-.|||. +|.+||++|.|-
T Consensus 21 ~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 21 THHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp HHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 4568777776654 58999999999 999999999884
No 139
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=39.98 E-value=74 Score=36.09 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=57.7
Q ss_pred eCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcC----CeeeecCch---hHHHHHHHHHHcCCEEEEeeCccccc
Q 041957 32 HYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQP----GKYDFSGRR---DLVRFIKEIQAQGLYASIRIGPFIQS 104 (734)
Q Consensus 32 hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~----G~~df~g~~---dl~~fl~~a~~~gl~vilr~GPyi~a 104 (734)
+|+.+..+.-.+.+++++++|++.+.+=--|....... |.+--+-.+ -|..+.+.+++.||+.=|+..|-+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 45666777778899999999998777666687653222 433222111 39999999999999999999887653
Q ss_pred ccc--CCCCCcccccCCC
Q 041957 105 EWS--YGGLPFWLHDVPG 120 (734)
Q Consensus 105 E~~--~Gg~P~Wl~~~p~ 120 (734)
+=. .-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 211 2347999987554
No 140
>PRK09989 hypothetical protein; Provisional
Probab=39.74 E-value=56 Score=34.21 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEE
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASI 96 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vil 96 (734)
-.+++|++++++|+..|++..+|. .+.+++.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999854332 2467888889999999774
No 141
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.42 E-value=58 Score=35.35 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=43.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----Cccc-CC--cCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF----WNLH-EP--QPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~----W~~h-Ep--~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.++-++.|+.|...|+|.+..|+- +.-+ |- .+|.|. ..++.++++.|+++||.||--+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecC
Confidence 3477889999999999999999864 3222 11 133343 3499999999999999999654
No 142
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.66 E-value=77 Score=32.74 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=60.9
Q ss_pred CCeeeecCchhHHHHHHHHHHcCCEEEEeeCccccccccCC-------C----CCccccc--CC--------------Cc
Q 041957 69 PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYG-------G----LPFWLHD--VP--------------GI 121 (734)
Q Consensus 69 ~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~G-------g----~P~Wl~~--~p--------------~~ 121 (734)
.+.|+.+=+.+++..|+.|+..-=. |.|.||..|-... | +=.|.-+ .- .|
T Consensus 74 ~~~~~v~~n~aF~~Vi~~CA~~~~~---r~~TWI~~~~~~aY~~Lh~~G~AHSvE~W~gdeLvGGlYGvalG~~F~GESM 150 (221)
T COG2360 74 QSPYRVRVNYAFAAVIEGCAATRPP---RDGTWINDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESM 150 (221)
T ss_pred cCCeEEEechhHHHHHHHHhccCCC---CCCcccCHHHHHHHHHHHHhccceeEEEeeCCeeehhhhhhhhcceeechhh
Confidence 4566666667888999999874222 8888887664321 1 1223221 01 11
Q ss_pred cccCCCh---hHHHHHHHHhhcCCCEEEEccccc----ccceecccCCCChHHHHHHHH
Q 041957 122 TFRCDNE---PFKKMKRLYASQGGPIILSQIENE----YQMVENAFGERGPPYIKWAAE 173 (734)
Q Consensus 122 ~~R~~~~---~y~~~~~~~~~~ggpiI~~QiENE----yg~~~~~~~~~~~~y~~~l~~ 173 (734)
--|-.|. +..++.+++...|+.+|=.|++|| +|.+ .-..++|.+.|++
T Consensus 151 Fsr~~nASKialv~lv~~L~~~g~~LiD~Q~~n~HL~~~GA~----~ipr~~y~~~L~~ 205 (221)
T COG2360 151 FSRATNASKIALVHLVEHLRRHGFVLIDCQVLNEHLASLGAY----EIPRKEYLNYLRR 205 (221)
T ss_pred hhcCCCchHHHHHHHHHHHHhcCceEEeeecCCHHHHhcCCe----ecCHHHHHHHHHH
Confidence 1111111 122567778889999999999999 4543 2468899999998
No 143
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=37.34 E-value=65 Score=33.99 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
..++|++|++.|-+. |..++--|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~viiG-----HSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVIIG-----HSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEeC-----cccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 458999999988874 55555555433 56888999999999999999997
No 144
>PLN03059 beta-galactosidase; Provisional
Probab=36.14 E-value=1.3e+02 Score=37.31 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCceEEEEEEEecCCC-------CceEEeeCCCc-eEEEEECCeeceeccccccCCCCCCceeeeccCCC-ccCCCCcEE
Q 041957 553 PPLTWYKTVFDATGED-------EYVALNLNGMR-KGEARVNGRSIGRYWPSLITPRGEPSQISYNIPRS-FLKPTGNLL 623 (734)
Q Consensus 553 ~~~~~Yk~~F~~~~~~-------dp~~Ld~~g~g-KG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~-~Lk~g~N~i 623 (734)
.+..||+++|+++... .| .|.+.+.+ +-+|||||.-+|.-.-.- -+..+- ++.+ =|+.|.|+|
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~~~------~~~~~~-~~~~v~l~~g~n~L 540 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYGEL------SNPKLT-FSQNVKLTVGINKI 540 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEeec------CCcceE-EecccccCCCceEE
Confidence 4789999999987543 13 37777664 589999999999876322 222333 5544 367899999
Q ss_pred EEEEe
Q 041957 624 VLLEE 628 (734)
Q Consensus 624 vifEe 628 (734)
-||=|
T Consensus 541 ~iLse 545 (840)
T PLN03059 541 SLLSV 545 (840)
T ss_pred EEEEE
Confidence 87643
No 145
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=35.75 E-value=64 Score=35.63 Aligned_cols=72 Identities=28% Similarity=0.345 Sum_probs=56.6
Q ss_pred EEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCe-eeecCchhHHHHHHHHHHcCCEEEEeeCcccccc
Q 041957 27 FSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGK-YDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSE 105 (734)
Q Consensus 27 ~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~-~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~aE 105 (734)
+|=++.+.|.+.+.=..-|++|...||..|-| ++|.|++.. --|. -+.++++.|++.||+||+-.-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 55678888888888888999999999987755 677776642 2233 678999999999999999997766544
No 146
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=35.65 E-value=68 Score=33.53 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEE
Q 041957 41 WPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASI 96 (734)
Q Consensus 41 W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vil 96 (734)
++++|++++++|++.|++.. | + ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 78999999999999999832 1 1 13799999999999999864
No 147
>PRK12677 xylose isomerase; Provisional
Probab=35.59 E-value=1.1e+02 Score=34.67 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeec---CchhHHHHHHHHHHcCCEEE-EeeC
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFS---GRRDLVRFIKEIQAQGLYAS-IRIG 99 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~---g~~dl~~fl~~a~~~gl~vi-lr~G 99 (734)
-+++.+++++++|+..|+.. .+..--|+.+ -.+.++++.++++++||.|. +.|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n 89 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTN 89 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecC
Confidence 47899999999999999873 1111112221 12358999999999999977 4443
No 148
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=35.49 E-value=2.6e+02 Score=30.96 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=76.5
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHH---cCCEEEEeeCccccccccCCCCC
Q 041957 36 SPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQA---QGLYASIRIGPFIQSEWSYGGLP 112 (734)
Q Consensus 36 ~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~---~gl~vilr~GPyi~aE~~~Gg~P 112 (734)
-.|+..+.-++.+|+.|++.--.|-.| |.|.+-|++-++..-+ .+|..-|+ |.+-.|. =
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~----~ 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWT----R 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----h
Confidence 367888999999999999999999888 5677778777766543 35544443 2333331 1
Q ss_pred cccccCCCccccC---CChhHH----HHHHHH-----hh-cCCCEEEEcccccccceecccCCCChHHHHHHHHHHHhcC
Q 041957 113 FWLHDVPGITFRC---DNEPFK----KMKRLY-----AS-QGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQ 179 (734)
Q Consensus 113 ~Wl~~~p~~~~R~---~~~~y~----~~~~~~-----~~-~ggpiI~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 179 (734)
.|-....++.+-. ....+. .+.+++ ++ +|-||+++=--.+. ..-+++++.+++.++++|
T Consensus 117 ~w~g~~~~~l~~q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~G 188 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEAG 188 (345)
T ss_pred ccCCCCccccccccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHcC
Confidence 2322222222211 112233 334443 23 78899987322222 135689999999999999
Q ss_pred CccceEE
Q 041957 180 TGVPWVM 186 (734)
Q Consensus 180 ~~vp~~~ 186 (734)
+.-+.+.
T Consensus 189 ~~giyii 195 (345)
T PF14307_consen 189 LPGIYII 195 (345)
T ss_pred CCceEEE
Confidence 9865444
No 149
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.41 E-value=87 Score=33.09 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHc-CCEEEEe
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQ-GLYASIR 97 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~-gl~vilr 97 (734)
.-|++.|+.+|++|++.|++-+........+ .....+++++.++++++ ++.+.+-
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 6699999999999999999987542111111 11346899999999999 7665543
No 150
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=35.35 E-value=68 Score=34.07 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
..++|++|++.|-+. |..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 79 ~~mLkd~G~~~viiG-----HSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVIIG-----HSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEeC-----cccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 568999999988874 66666655433 33444445559999999999997
No 151
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=35.31 E-value=1.5e+02 Score=29.95 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=60.4
Q ss_pred EECCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCC--------------------cCC---eeee
Q 041957 18 IINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEP--------------------QPG---KYDF 74 (734)
Q Consensus 18 ~~dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp--------------------~~G---~~df 74 (734)
.-+|..|.|+-..-=-....+ +++..++.+|++|+ .|-.|.|...... .++ .+|+
T Consensus 18 ~~~g~~fviiKateG~~~~d~-~~~~n~~~A~~aGl-~vG~Yhf~~~~~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDv 95 (196)
T cd06415 18 GQAGAKFAIVKISEGTNYVNP-KASAQVSSAIANGK-MTGGYHFARFGGSVSQAKYEADYFLNSAQQAGLPKGSYLALDY 95 (196)
T ss_pred HhCCCcEEEEEEcCCCccCCc-cHHHHHHHHHHCCC-eeEEEEEEecCCCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEE
Confidence 335666666654322222333 67788888888887 6677777532210 011 3466
Q ss_pred cCc---------hhHHHHHHHHHHcCCEEEEeeCccccccccC-----C--CCCcccccCCC
Q 041957 75 SGR---------RDLVRFIKEIQAQGLYASIRIGPFIQSEWSY-----G--GLPFWLHDVPG 120 (734)
Q Consensus 75 ~g~---------~dl~~fl~~a~~~gl~vilr~GPyi~aE~~~-----G--g~P~Wl~~~p~ 120 (734)
+.. +.+..|++..++.|.+++|=.+++.....-. . ..|.||.+.+.
T Consensus 96 E~~~~~~~~~~~~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 96 EQGSGNSKAANTSAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 542 3578899999999999888887764333211 1 23589987654
No 152
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.29 E-value=36 Score=33.56 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeC-cccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEEeeCcc
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFW-NLHEPQ--PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPF 101 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W-~~hEp~--~G~~df~g~~dl~~fl~~a~~~gl~vilr~GPy 101 (734)
.+..++.++.++++|...|.+...+ +.+.+. +-.++.. ...|+++++.|+++|+.+.|.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 3567788999999999999888664 112111 1122211 2478899999999999999998543
No 153
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.18 E-value=76 Score=25.10 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEE
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYA 94 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~v 94 (734)
|..-.+.+.-+.+.|+|.++++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34466788899999999999886 3333234555655533 4889999999999765
No 154
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=35.02 E-value=46 Score=36.96 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=43.3
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 35 RSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 35 r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
|.+...=.-..+.+|++|.+.|.+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-++|-+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 54443322336789999999999999999543310 011123479999999999999988854
No 155
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=34.88 E-value=40 Score=36.80 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCE--EE-Eee
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLY--AS-IRI 98 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~--vi-lr~ 98 (734)
.|++.+.+++..|+ +|++.-+=-..|..|+.| +|+.+.+++|..+||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 678888888999999988 5899999999999986 44 776
No 156
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.79 E-value=56 Score=34.54 Aligned_cols=53 Identities=21% Similarity=0.424 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
-|++.++.++++|+..|+..+. ..++ ....++++ ...++++.++++++||.|.
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVN 74 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCcee
Confidence 5999999999999999999642 1111 01122333 2368899999999999975
No 157
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.12 E-value=92 Score=35.95 Aligned_cols=56 Identities=25% Similarity=0.378 Sum_probs=46.1
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 31 IHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 31 ~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.-|.+.|.+.-++.++++.++|+..|+++..-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 44666677778889999999999999999986654 268899999999999876654
No 158
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=33.86 E-value=57 Score=36.20 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=46.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CcccCC------cCCeeeec---CchhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF----WNLHEP------QPGKYDFS---GRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~----W~~hEp------~~G~~df~---g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.+..++.|+.|-...+|++..++- |.+--+ +.|.|.=. ...++..+++.|++.|+.||.-+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 5788999999999999999998874 665432 12332211 13499999999999999999654
No 159
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=33.45 E-value=66 Score=40.31 Aligned_cols=21 Identities=10% Similarity=0.457 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCEEEEee
Q 041957 78 RDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 78 ~dl~~fl~~a~~~gl~vilr~ 98 (734)
++|+++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999875
No 160
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.20 E-value=48 Score=34.83 Aligned_cols=55 Identities=13% Similarity=-0.000 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCcC----CeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQP----GKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~----G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.+++.++.++++|..+|.+. ..+.... -.+... ...|+++.+.|+++|+.+.+-+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 55677889999999999663 2232111 112211 1378999999999999998887
No 161
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.89 E-value=54 Score=34.55 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=57.2
Q ss_pred EeEEEEEeeeCCC-CCcccHHHHHHHHHHcCCCEEEEceeCcccCC-----------cCCeeeecCchhHHHHHHHHHHc
Q 041957 23 RKVLFSGSIHYPR-SPREMWPSLISKAKEGGLDVIQTYVFWNLHEP-----------QPGKYDFSGRRDLVRFIKEIQAQ 90 (734)
Q Consensus 23 ~~~~~~G~~hy~r-~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-----------~~G~~df~g~~dl~~fl~~a~~~ 90 (734)
-+.+..|+-+..| ++.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|.+++.+.+..
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~ 199 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARA 199 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhC
Confidence 3444455555555 688999999999998888777443 22221 24557888888999999999999
Q ss_pred CCEEEEeeCccccc
Q 041957 91 GLYASIRIGPFIQS 104 (734)
Q Consensus 91 gl~vilr~GPyi~a 104 (734)
.+.|-...||.--|
T Consensus 200 ~l~I~~Dsg~~HlA 213 (279)
T cd03789 200 DLVVTNDSGPMHLA 213 (279)
T ss_pred CEEEeeCCHHHHHH
Confidence 99888888775433
No 162
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=32.82 E-value=87 Score=32.26 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
..++|++|++.|-+. |..++ |..+ |+.+=++.|.++||.+||+.
T Consensus 74 ~~mLkd~G~~~viiG-----HSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLIN-----HSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEEC-----cccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 468999999987763 44444 5545 69999999999999999998
No 163
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=32.28 E-value=83 Score=34.10 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=43.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCC--cCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEP--QPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp--~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.++..++.++++++.|.+.|-+|.-+..--+ .++...++ ...+.+++++|+++|+.|.+..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 3667889999999999999999975432111 12211122 2378999999999999988775
No 164
>PLN02877 alpha-amylase/limit dextrinase
Probab=32.12 E-value=79 Score=39.84 Aligned_cols=21 Identities=10% Similarity=0.377 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHcCCEEEEee
Q 041957 78 RDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 78 ~dl~~fl~~a~~~gl~vilr~ 98 (734)
++++++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999975
No 165
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.86 E-value=28 Score=34.26 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
|+.++++|+..|+............ ...++.+.++++++||.|.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~ 44 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIA 44 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEE
Confidence 6789999999999987644333222 3479999999999999966
No 166
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=31.77 E-value=41 Score=32.09 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHcCCEEEEeeCccccccc
Q 041957 78 RDLVRFIKEIQAQGLYASIRIGPFIQSEW 106 (734)
Q Consensus 78 ~dl~~fl~~a~~~gl~vilr~GPyi~aE~ 106 (734)
.||+.||++|++.|+.|++-.-| +++.|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~w 63 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKW 63 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHH
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHH
Confidence 39999999999999998766544 45554
No 167
>PLN02389 biotin synthase
Probab=31.62 E-value=63 Score=36.42 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCEEEEcee--CcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 41 WPSLISKAKEGGLDVIQTYVF--WNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 41 W~~~l~k~ka~G~N~v~~yv~--W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
=++.++++|++|++.+..-+- -..+.-.-..-+|+ +..+.++.|++.||.|-
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 467889999999998766322 21121111122444 56678899999998763
No 168
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=31.47 E-value=67 Score=33.88 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=31.1
Q ss_pred EECCEEeEEEEEeeeCCCCCc-ccHHHHHHHHHHcCCCEEE
Q 041957 18 IINGERKVLFSGSIHYPRSPR-EMWPSLISKAKEGGLDVIQ 57 (734)
Q Consensus 18 ~~dg~~~~~~~G~~hy~r~~~-~~W~~~l~k~ka~G~N~v~ 57 (734)
.+.|++++.+.|.+|+..... .+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 467999999999999876543 3336778889999987763
No 169
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=30.83 E-value=1.2e+02 Score=38.30 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=53.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEEeeCccccc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGR--RDLVRFIKEIQAQGLYASIRIGPFIQS 104 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~--~dl~~fl~~a~~~gl~vilr~GPyi~a 104 (734)
+|..|+ +.+.-++.++++++.+|-+=.+++-|.++.- -+.|.|+-. -|..++++..++.|+++++-.-|+|.+
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~ 267 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKA 267 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCcc
Confidence 444553 3455678899999999998888887776653 345666533 388999999999999988776666643
No 170
>PRK15492 triosephosphate isomerase; Provisional
Probab=30.11 E-value=1e+02 Score=33.00 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=38.7
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
..++|++|++.|-+. |..++-.|.= .+..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~viiG-----HSERR~~f~E-td~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMIG-----HSERRHKFGE-TDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEEC-----ccccccccCc-chHHHHHHHHHHHHCCCEEEEEcC
Confidence 458999999988874 6666666643 355677788899999999999997
No 171
>PRK10658 putative alpha-glucosidase; Provisional
Probab=29.79 E-value=1.2e+02 Score=36.80 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCC-cCCeeeecCch--hHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEP-QPGKYDFSGRR--DLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-~~G~~df~g~~--dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+.-.+.++++|+.||-+=.+.+-+.++.. .-+.|.|+-.+ |.+.+++..++.|++|++..=|||.
T Consensus 283 ~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 283 ATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred HHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 34567789999999976544443333333 23466665332 8899999999999999999988874
No 172
>PRK07094 biotin synthase; Provisional
Probab=29.75 E-value=48 Score=36.01 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCEEEEcee---CcccCCcCCeeeecCchhHHHHHHHHHHcCCEE
Q 041957 42 PSLISKAKEGGLDVIQTYVF---WNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYA 94 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~---W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~v 94 (734)
++.+++||++|++.|.+.+- -..++-.....+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 45677777777777765432 12222211223444 5666777777777753
No 173
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=29.62 E-value=84 Score=34.34 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CcccCC------cCCeee------ecCchhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF----WNLHEP------QPGKYD------FSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~----W~~hEp------~~G~~d------f~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.+.-++.|+.|-..++|++..++- |.+.-+ +.|.+. +=...|++++++.|+++||.||--+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 5688899999999999999999986 543321 223221 1123499999999999999999654
No 174
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=29.41 E-value=96 Score=34.31 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=28.7
Q ss_pred eCCeEEECCEEeEEEEEeeeCCCCC-cccHHHHH-HHHHHcCCCEEEEc
Q 041957 13 DGRSLIINGERKVLFSGSIHYPRSP-REMWPSLI-SKAKEGGLDVIQTY 59 (734)
Q Consensus 13 d~~~~~~dg~~~~~~~G~~hy~r~~-~~~W~~~l-~k~ka~G~N~v~~y 59 (734)
|.+.+.|||||+++| +++..++ ...+-+.+ +.+|++|+.-|-+=
T Consensus 150 D~rYikVdGKPv~~I---y~p~~~pd~~~~~~~wr~~a~~~G~~giyii 195 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLI---YRPGDIPDIKEMIERWREEAKEAGLPGIYII 195 (345)
T ss_pred CCCceeECCEEEEEE---ECcccccCHHHHHHHHHHHHHHcCCCceEEE
Confidence 678899999999998 3333332 22233333 46788999855443
No 175
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=29.39 E-value=36 Score=35.02 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=50.5
Q ss_pred EeEEEEEeeeCCC-CCcccHHHHHHHHHHcCCCEEEEceeCcccC--------CcCC----eeeecCchhHHHHHHHHHH
Q 041957 23 RKVLFSGSIHYPR-SPREMWPSLISKAKEGGLDVIQTYVFWNLHE--------PQPG----KYDFSGRRDLVRFIKEIQA 89 (734)
Q Consensus 23 ~~~~~~G~~hy~r-~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hE--------p~~G----~~df~g~~dl~~fl~~a~~ 89 (734)
-+.+.-|.-+..| +|.+.|.+.++++++.| ..+.++|.-.| -.++ ..++.|..+|..++.+.+.
T Consensus 107 ~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 107 YIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp EEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred eEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 3444445545444 79999999999999998 55668887666 1223 6889898999999999999
Q ss_pred cCCEEEEeeCc
Q 041957 90 QGLYASIRIGP 100 (734)
Q Consensus 90 ~gl~vilr~GP 100 (734)
..+.|-.-.||
T Consensus 184 a~~~I~~Dtg~ 194 (247)
T PF01075_consen 184 ADLVIGNDTGP 194 (247)
T ss_dssp SSEEEEESSHH
T ss_pred CCEEEecCChH
Confidence 99988777776
No 176
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=29.09 E-value=70 Score=34.75 Aligned_cols=61 Identities=18% Similarity=0.363 Sum_probs=43.3
Q ss_pred HHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCE--EEEeeCcccc-------ccccCCCCCcc
Q 041957 44 LISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLY--ASIRIGPFIQ-------SEWSYGGLPFW 114 (734)
Q Consensus 44 ~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~--vilr~GPyi~-------aE~~~Gg~P~W 114 (734)
.|++-.++|.+.+.|-.| ||.+ .+.+|++.|++.|+. |+...-|-.. ++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455555789988888665 4555 899999999999954 5555555221 67777778888
Q ss_pred ccc
Q 041957 115 LHD 117 (734)
Q Consensus 115 l~~ 117 (734)
+.+
T Consensus 235 l~~ 237 (296)
T PRK09432 235 MAK 237 (296)
T ss_pred HHH
Confidence 865
No 177
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.07 E-value=18 Score=36.16 Aligned_cols=64 Identities=28% Similarity=0.456 Sum_probs=43.9
Q ss_pred eEEEEEeeeCCCC---CcccHHHHHHHHHHcCCCEE--EEceeCcccCCcCC--eeeecCchhHHHHHHHHHHcCCEEEE
Q 041957 24 KVLFSGSIHYPRS---PREMWPSLISKAKEGGLDVI--QTYVFWNLHEPQPG--KYDFSGRRDLVRFIKEIQAQGLYASI 96 (734)
Q Consensus 24 ~~~~~G~~hy~r~---~~~~W~~~l~k~ka~G~N~v--~~yv~W~~hEp~~G--~~df~g~~dl~~fl~~a~~~gl~vil 96 (734)
...-+|--.|.|+ .|-.-+ +-+.++|.+.+ .|.| ..| -|||-....|..|.++|+++||.+-|
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-------KDGkslFdfm~~e~l~eFvd~Ah~hGL~~Al 185 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-------KDGKSLFDFMDEEELEEFVDLAHEHGLEVAL 185 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-------ccchhHHhhhcHHHHHHHHHHHHHcchHHHh
Confidence 3455666677775 333333 35667777754 4433 344 48998888999999999999998765
Q ss_pred e
Q 041957 97 R 97 (734)
Q Consensus 97 r 97 (734)
.
T Consensus 186 A 186 (235)
T COG1891 186 A 186 (235)
T ss_pred c
Confidence 4
No 178
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=29.06 E-value=98 Score=38.03 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=47.2
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCC--EEEEceeCcccCCcCCeeeecC----chhHHHHHHHHHHcCCEEEEeeCcc
Q 041957 31 IHYPRS---PREMWPSLISKAKEGGLD--VIQTYVFWNLHEPQPGKYDFSG----RRDLVRFIKEIQAQGLYASIRIGPF 101 (734)
Q Consensus 31 ~hy~r~---~~~~W~~~l~k~ka~G~N--~v~~yv~W~~hEp~~G~~df~g----~~dl~~fl~~a~~~gl~vilr~GPy 101 (734)
+|..|+ .-+.-+++.+.++++|+. ++-+=+.|. ++-=||+= -.++..|++..++.|+++|+-+-|+
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~ 374 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPF 374 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCc
Confidence 444453 334457899999999998 544445554 22223331 1268999999999999999988777
Q ss_pred ccc
Q 041957 102 IQS 104 (734)
Q Consensus 102 i~a 104 (734)
|..
T Consensus 375 is~ 377 (805)
T KOG1065|consen 375 IST 377 (805)
T ss_pred ccc
Confidence 753
No 179
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=28.93 E-value=2.1e+02 Score=26.49 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=39.9
Q ss_pred eEEEEEEeCCCCCCCCceeEeCCcceEEEEEECCEEEEEEecccc-----CceeEEEeeeecCCC-ccEEEEEEecCC
Q 041957 414 YLWYSFSFQPEPSDTRAQLSVHSLGHVLHAFVNGVPVGSAHGSYK-----NTSFTLQTDFSLSNG-INNVSLLSVMVG 485 (734)
Q Consensus 414 yllY~t~i~~~~~~~~~~L~v~~~~D~~~Vfvng~~vG~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILven~G 485 (734)
.+.|++.|..+.+ ..-++.+. ..|.+.+||||+.+-...+... .........+.+.+| .+.|.|+..+.+
T Consensus 47 ~~~~~G~~~~~~~-G~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 47 SVRWTGYFKPPET-GTYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEEEEEEEEESSS-EEEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EEEEEEEEecccC-ceEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 4568888876532 12233333 6789999999999977664321 001112223345554 788888765554
No 180
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=28.08 E-value=89 Score=38.06 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCEEEE-ceeCcccCCcC---C-----------------eeeecC-----chhHHHHHHHHHHcCCEEEEe
Q 041957 44 LISKAKEGGLDVIQT-YVFWNLHEPQP---G-----------------KYDFSG-----RRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 44 ~l~k~ka~G~N~v~~-yv~W~~hEp~~---G-----------------~~df~g-----~~dl~~fl~~a~~~gl~vilr 97 (734)
.|.-+|++|+++|+. +|+.-..|+.. | .|--+. .+.|+.+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 399999999999995 47755555543 2 222222 247889999999999999998
Q ss_pred e
Q 041957 98 I 98 (734)
Q Consensus 98 ~ 98 (734)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 6
No 181
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.08 E-value=75 Score=33.45 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcC-CeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQP-GKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~-G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.+++.|+.++++|.+.|.+.-+-...++.. -.++. -...|.+++++|+++|+.+.+-+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4567889999999999998631100011111 01110 11368889999999999999887
No 182
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=27.79 E-value=1.8e+02 Score=31.82 Aligned_cols=67 Identities=21% Similarity=0.442 Sum_probs=49.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee-Ccc-cCCcCC-----eeeecCc--hhHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF-WNL-HEPQPG-----KYDFSGR--RDLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~-W~~-hEp~~G-----~~df~g~--~dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
+.+.-++.++++++.||-+=.+++- |.. ++..-| .|+|.-. -|..++|+..++.|++|++..=|+|+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 5666789999999999988777765 632 232223 2344332 38999999999999999998877775
No 183
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.77 E-value=1.4e+02 Score=32.05 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=41.0
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 36 SPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 36 ~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
.|.+.=++++++..+.|+..|+++++.+.. ..+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~~------------~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALNDV------------RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCChH------------HHHHHHHHHHHHCCCeEEEE
Confidence 345556889999999999999999886652 37889999999999987753
No 184
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.60 E-value=91 Score=28.83 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
+++...+.++.++++|+..|-+.-- ..-++++++|+++||.++
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g----------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPG----------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TT----------------S--HHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcc----------------hHHHHHHHHHHHcCCEEE
Confidence 7788999999999999887644321 356889999999999976
No 185
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.33 E-value=72 Score=33.36 Aligned_cols=59 Identities=12% Similarity=-0.053 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcCCe-eeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGK-YDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~-~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+..++.++.++++|..+|.+...+.--...+.+ ++ .-...|.++.++|+++|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999764433211111111 11 112467888899999999999987
No 186
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=27.33 E-value=1e+02 Score=33.85 Aligned_cols=72 Identities=11% Similarity=0.217 Sum_probs=45.1
Q ss_pred EEEEeeeCCC-CCcccHHHHHHHHHHcCCCEEEEceeCcccCC-------------cCCeeeecCchhHHHHHHHHHHcC
Q 041957 26 LFSGSIHYPR-SPREMWPSLISKAKEGGLDVIQTYVFWNLHEP-------------QPGKYDFSGRRDLVRFIKEIQAQG 91 (734)
Q Consensus 26 ~~~G~~hy~r-~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp-------------~~G~~df~g~~dl~~fl~~a~~~g 91 (734)
+.-|+-+..| ||.+.|.+.++.+++.|+..| +++.-.|. .+...|..|..+|..+..+.+...
T Consensus 188 i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 264 (352)
T PRK10422 188 IQPTARQIFKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQ 264 (352)
T ss_pred EecCCCccccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCC
Confidence 3334444444 799999999999988887655 44443221 123456666667777777777776
Q ss_pred CEEEEeeCc
Q 041957 92 LYASIRIGP 100 (734)
Q Consensus 92 l~vilr~GP 100 (734)
++|=--.||
T Consensus 265 l~v~nDSGp 273 (352)
T PRK10422 265 LFIGVDSAP 273 (352)
T ss_pred EEEecCCHH
Confidence 665544443
No 187
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=26.63 E-value=3.6e+02 Score=29.95 Aligned_cols=112 Identities=24% Similarity=0.460 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCcccCCc-----CCeeeecCchhHHHHHHHH---HHcCCEEEEeeCccccccccCCCCCc
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLHEPQ-----PGKYDFSGRRDLVRFIKEI---QAQGLYASIRIGPFIQSEWSYGGLPF 113 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~hEp~-----~G~~df~g~~dl~~fl~~a---~~~gl~vilr~GPyi~aE~~~Gg~P~ 113 (734)
++.++.+.++|++-|-.-|. ...|+ -|.=|+ |+++.+++| .+.++.|++-| .
T Consensus 204 ~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dY----dv~kvle~aE~i~~a~idvlIaP--------------v 263 (414)
T COG2100 204 KKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDY----DVKKVLEVAEYIANAGIDVLIAP--------------V 263 (414)
T ss_pred HHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCcccc----CHHHHHHHHHHHHhCCCCEEEee--------------e
Confidence 35566777777777665442 22221 143222 455665555 56899999865 6
Q ss_pred ccccCCCccccCCChhHHHHHHHH----hhcCCCEEEEcccccccceecccCC--------CChHHHHHHHHHHHhcCCc
Q 041957 114 WLHDVPGITFRCDNEPFKKMKRLY----ASQGGPIILSQIENEYQMVENAFGE--------RGPPYIKWAAEMAVGLQTG 181 (734)
Q Consensus 114 Wl~~~p~~~~R~~~~~y~~~~~~~----~~~ggpiI~~QiENEyg~~~~~~~~--------~~~~y~~~l~~~~~~~g~~ 181 (734)
|| |++ ||...-++.++- +.+.-|.+++|-==+|- ||- .=++|-+||+++=++.|+.
T Consensus 264 ~l---PG~----ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk-----~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 264 WL---PGV----NDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYK-----FGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred ec---CCc----ChHHHHHHHHHHHHhCCCCCCCCcceEEeeeec-----ccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 66 555 666666655554 34456788888544442 221 2358999999999999887
Q ss_pred cceEE
Q 041957 182 VPWVM 186 (734)
Q Consensus 182 vp~~~ 186 (734)
|++.
T Consensus 332 -pLil 335 (414)
T COG2100 332 -PLIL 335 (414)
T ss_pred -cccc
Confidence 6664
No 188
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=26.32 E-value=1.2e+02 Score=33.37 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=47.6
Q ss_pred EECCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 18 IINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 18 ~~dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
.+.|++++.++|--++. .-++.++++|++.+.+..| |+.+.|+ ..|++.+.+.|++.+ .||.
T Consensus 224 ~l~~~~v~a~sGIg~P~--------~F~~~L~~~G~~~~~~~~f-------~DHh~yt-~~dl~~l~~~a~~~~--~ilt 285 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNPE--------RFFDTLESLGIEVVGTLAF-------PDHHRYT-EQDLEKLEAEAKAAG--IILT 285 (326)
T ss_pred hccCCeeEEEEEcCChH--------HHHHHHHHcCCeEEEeeEC-------CCCCCCC-HHHHHHHHHhhcccc--eEEe
Confidence 37899999999988872 3455677799999988776 4444565 458999999999988 5555
Q ss_pred e
Q 041957 98 I 98 (734)
Q Consensus 98 ~ 98 (734)
+
T Consensus 286 T 286 (326)
T PF02606_consen 286 T 286 (326)
T ss_pred c
Confidence 4
No 189
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=26.22 E-value=88 Score=27.30 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=26.4
Q ss_pred hcCCCEEEEccccc-ccceec----ccC-CCChHHHHHHHHH---HHhcCCccceEE
Q 041957 139 SQGGPIILSQIENE-YQMVEN----AFG-ERGPPYIKWAAEM---AVGLQTGVPWVM 186 (734)
Q Consensus 139 ~~ggpiI~~QiENE-yg~~~~----~~~-~~~~~y~~~l~~~---~~~~g~~vp~~~ 186 (734)
++...|.||+|=|| -+.... ..+ .....|.+||+++ +|+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 45678999999999 552211 111 1245666676665 566677778654
No 190
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=26.20 E-value=73 Score=33.56 Aligned_cols=48 Identities=17% Similarity=0.440 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE-EeeCccccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS-IRIGPFIQS 104 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi-lr~GPyi~a 104 (734)
+.-++.++++|++|+ -|+.+| +|. .+-|+.|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~------------~~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPD------------PEQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 445677899999999 677766 443 255889999999866 999999875
No 191
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=26.04 E-value=54 Score=36.17 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCEEEEceeCccc------CCcCCeeeecCchhHHHHHHHHHHcCCEE
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLH------EPQPGKYDFSGRRDLVRFIKEIQAQGLYA 94 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~h------Ep~~G~~df~g~~dl~~fl~~a~~~gl~v 94 (734)
++.+++||++|++.+-. .-.... .-.|++..+. +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998740 001111 1123433333 4568899999999965
No 192
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=25.95 E-value=55 Score=34.85 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=43.1
Q ss_pred HHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 44 LISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 44 ~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.-+++|+.|-+.|-+-|.|..-||+-.+-.- .-+++|...|+.+||-.+|-|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~neqk~---a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINEQKL---AYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhHHHH---HHHHHHHHHhhhcCCceeEee
Confidence 3578999999999999999999983333222 368999999999999999887
No 193
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=25.69 E-value=1.5e+02 Score=32.77 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CcccCC------cCCeee--------ecCchhHHHHHHHHHHcCCEEEEee
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF----WNLHEP------QPGKYD--------FSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~----W~~hEp------~~G~~d--------f~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.+..++.|+.|-...+|++..++- |.+.-+ ..|.+. |=...++.++++.|++.|+.||--+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 6788999999999999999999985 765432 123221 1123599999999999999999554
No 194
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=25.68 E-value=45 Score=33.28 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=55.7
Q ss_pred CEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcc-c-------------CCc----CCeeeecCc-----
Q 041957 21 GERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNL-H-------------EPQ----PGKYDFSGR----- 77 (734)
Q Consensus 21 g~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~-h-------------Ep~----~G~~df~g~----- 77 (734)
|..|.|+-..-=- -..-..++..++.++++|+ .|-+|.|-.. . ... +-.+|++..
T Consensus 21 gi~fviiKateG~-~y~D~~~~~~~~~a~~aGl-~~G~Yhy~~~~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~~ 98 (184)
T cd06525 21 GVEVVYIKATEGT-TFVDSYFNENYNGAKAAGL-KVGFYHFLVGTSNPEEQAENFYNTIKGKKMDLKPALDVEVNFGLSK 98 (184)
T ss_pred CCeEEEEEecCCC-cccCHhHHHHHHHHHHCCC-ceEEEEEeeCCCCHHHHHHHHHHhccccCCCCCeEEEEecCCCCCH
Confidence 5566666443110 1123446677777777776 4555554321 1 111 124466431
Q ss_pred ----hhHHHHHHHHHHc-CCEEEEeeCccccccc---cCCCCCcccccCC
Q 041957 78 ----RDLVRFIKEIQAQ-GLYASIRIGPFIQSEW---SYGGLPFWLHDVP 119 (734)
Q Consensus 78 ----~dl~~fl~~a~~~-gl~vilr~GPyi~aE~---~~Gg~P~Wl~~~p 119 (734)
..+..|++..+++ |.+++|=.+++..... .....|.||.+.+
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~ 148 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYG 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEecc
Confidence 4678999999998 9999988887543222 2345688998754
No 195
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.33 E-value=1.1e+02 Score=36.52 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=44.5
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 31 IHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 31 ~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
+=|.|.|.+.-+..++++++.|+.+|+++...|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 44666777778889999999999999999877764 389999999999999864
No 196
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.31 E-value=1e+02 Score=34.46 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.|..-++++++.|++.|.-+...-.-....+. + -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~--~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK--I----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc--c----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987765432222211122 2 24688999999999999887
No 197
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=25.29 E-value=58 Score=40.32 Aligned_cols=77 Identities=21% Similarity=0.443 Sum_probs=51.2
Q ss_pred CcccHHHHHHHHHHcCCCEEE------------EceeCcccCC------cCCeeeecCchhHHHHHHHHHH-cCCEEEEe
Q 041957 37 PREMWPSLISKAKEGGLDVIQ------------TYVFWNLHEP------QPGKYDFSGRRDLVRFIKEIQA-QGLYASIR 97 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~------------~yv~W~~hEp------~~G~~df~g~~dl~~fl~~a~~-~gl~vilr 97 (734)
|-+.|+.+|+++|+.|.|+|. .|-.-+.||- .-++|.|+ |+..+++.+++ -++--|--
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 568999999999999999996 2433444442 33678898 99999999865 46554422
Q ss_pred eCcccccccc-CCCCCcccccCCCcc
Q 041957 98 IGPFIQSEWS-YGGLPFWLHDVPGIT 122 (734)
Q Consensus 98 ~GPyi~aE~~-~Gg~P~Wl~~~p~~~ 122 (734)
. -|+ +.-=-.||+.+|+..
T Consensus 217 v------V~NHtAnns~WlleHPea~ 236 (1521)
T KOG3625|consen 217 V------VYNHTANNSKWLLEHPEAA 236 (1521)
T ss_pred h------hhhccccCCchhHhCchhh
Confidence 2 011 122356887777643
No 198
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.23 E-value=1.6e+02 Score=32.27 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee--Cccc---CCc------------------------CCeeeecCchhHHHHHHHH
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVF--WNLH---EPQ------------------------PGKYDFSGRRDLVRFIKEI 87 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~--W~~h---Ep~------------------------~G~~df~g~~dl~~fl~~a 87 (734)
+.+..++.|+.|-..++|++..++- |.+- .|. .|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6788999999999999999998765 3321 111 12232 34999999999
Q ss_pred HHcCCEEEEee
Q 041957 88 QAQGLYASIRI 98 (734)
Q Consensus 88 ~~~gl~vilr~ 98 (734)
+++|+.||--+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999999443
No 199
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=25.10 E-value=1.2e+02 Score=30.75 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=57.9
Q ss_pred EeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEEeeCc
Q 041957 23 RKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQ--PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGP 100 (734)
Q Consensus 23 ~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~gl~vilr~GP 100 (734)
.+++++|+.+...-....-+...+.+++.|..+..+.+. . ..+. .+ .++ +.-++.++++..++++..||.-|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~-~-l~~~~~~~-~~~-~~~~~~~~~~~i~~AD~iIi~tP-- 75 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ-N-FAPEDLLY-ARF-DSPALKTFTEQLAQADGLIVATP-- 75 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc-C-CChHHHHh-ccC-CCHHHHHHHHHHHHCCEEEEECC--
Confidence 467889988876667777778888888899766544332 1 1111 01 011 12489999999999999999888
Q ss_pred cccccccCCCCCccccc
Q 041957 101 FIQSEWSYGGLPFWLHD 117 (734)
Q Consensus 101 yi~aE~~~Gg~P~Wl~~ 117 (734)
|| +|.+|+-|++
T Consensus 76 ----~Y-~~s~pg~LKn 87 (191)
T PRK10569 76 ----VY-KASFSGALKT 87 (191)
T ss_pred ----cc-CCCCCHHHHH
Confidence 66 7788877754
No 200
>PLN02561 triosephosphate isomerase
Probab=25.09 E-value=1.3e+02 Score=31.96 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=38.4
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
..++|++|++.|-+. |..++-.|.=+ +..+.+=++.|.++||.+||+.|
T Consensus 81 ~~mL~d~G~~~viiG-----HSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVILG-----HSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEEC-----cccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 458899999988764 66666555433 56778888899999999999997
No 201
>PRK14567 triosephosphate isomerase; Provisional
Probab=25.04 E-value=1.4e+02 Score=31.82 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=37.6
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
-.++|++|++.|-+. |..++--|.= .+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yviiG-----HSERR~~f~E-td~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLIG-----HSERRSLFAE-SDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEEC-----cccccCccCC-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 458899999988764 5556655543 345677888899999999999997
No 202
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.93 E-value=55 Score=36.29 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCEEE-----EceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 041957 41 WPSLISKAKEGGLDVIQ-----TYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 41 W~~~l~k~ka~G~N~v~-----~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
-++.|+++|++|++.+- ++..--++.-.+++...+ ...+.++.|+++||.+-
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 45679999999987654 222222233335544443 44578999999999753
No 203
>PRK14566 triosephosphate isomerase; Provisional
Probab=24.81 E-value=1.4e+02 Score=31.99 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
..++|++|++.|-+. |..++..|.= .+..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~viiG-----HSERR~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVIIG-----HSERRRMYGE-TSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEEC-----cccccCCCCc-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 458999999988764 6666655543 345677788999999999999997
No 204
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=24.66 E-value=81 Score=38.22 Aligned_cols=57 Identities=12% Similarity=0.323 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCEEEEc--------e-eCcccCC----cCCeeeec----CchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTY--------V-FWNLHEP----QPGKYDFS----GRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~y--------v-~W~~hEp----~~G~~df~----g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+++|..+|.+|+|+|+.- + .|.++-- -.+.|-=. -..++.++++.|+..||.|||-.
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 355999999999999842 2 3554421 00111000 02489999999999999999986
No 205
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.64 E-value=1.2e+02 Score=32.34 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.++++.+.+.|+..|++.+..+ +++ .+...++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 4578888999999999987654 344 78889999999999887665
No 206
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=24.35 E-value=1.3e+02 Score=31.63 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=53.6
Q ss_pred EECCEEeEEEEEeeeCCC-CCcccHHHHHHHHHHcCCCEEEE-------------------c----ee-CcccCCcCC--
Q 041957 18 IINGERKVLFSGSIHYPR-SPREMWPSLISKAKEGGLDVIQT-------------------Y----VF-WNLHEPQPG-- 70 (734)
Q Consensus 18 ~~dg~~~~~~~G~~hy~r-~~~~~W~~~l~k~ka~G~N~v~~-------------------y----v~-W~~hEp~~G-- 70 (734)
.++|+|.+++-|.+|... .+-..--=-.+-|+-+|++++-. + ++ -....|-+|
T Consensus 72 ~l~G~pvv~mqgrfh~yegy~L~~~tfpvrVm~l~Gv~~lvvTnaAggin~~f~vgdiMli~DHin~~G~agq~pl~Gpn 151 (286)
T KOG3984|consen 72 TLGGAPVVAMQGRFHSYEGYPLAKCTFPVRVMQLLGVRILVVTNAAGGINPKFAVGDIMLIKDHINLPGLAGQNPLRGPN 151 (286)
T ss_pred ecCCceEEEEcccccccCCccHHHhhhhHHHHHHcCceEEEEeccccCcCcccccccEEEEecccCCccccCCCCCCCCC
Confidence 578999999999999544 33322223457788888776531 1 11 112223332
Q ss_pred -------------eeeecCchhHHHHHHHHHHcCCEEEEeeCcccc
Q 041957 71 -------------KYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQ 103 (734)
Q Consensus 71 -------------~~df~g~~dl~~fl~~a~~~gl~vilr~GPyi~ 103 (734)
.||.+ -.++.|+.+++.|+.--|.-|-|.|
T Consensus 152 d~rfG~rf~a~sdAYd~~---lr~~a~~~~K~m~iqr~lheGvy~~ 194 (286)
T KOG3984|consen 152 DPRFGVRFPALSDAYDKD---LRQKALEIGKAMGIQRTLHEGVYAC 194 (286)
T ss_pred cccccccccchhhhhhHH---HHHHHHHHHHHhcccchhhcceEEE
Confidence 33333 4567899999999998889898886
No 207
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=24.32 E-value=1.6e+02 Score=31.37 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=52.4
Q ss_pred eEEEEEeeeCCCCCccc-H---HHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEE--EEe
Q 041957 24 KVLFSGSIHYPRSPREM-W---PSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYA--SIR 97 (734)
Q Consensus 24 ~~~~~G~~hy~r~~~~~-W---~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~v--ilr 97 (734)
.+.+++..||.+-|... - .++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|+++|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 47889999887643322 2 24566666889998888765 4444 7889999999997664 444
Q ss_pred eCcccc-------ccccCCCCCccccc
Q 041957 98 IGPFIQ-------SEWSYGGLPFWLHD 117 (734)
Q Consensus 98 ~GPyi~-------aE~~~Gg~P~Wl~~ 117 (734)
.-|-.. ++|..-.+|.|+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~ 218 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVK 218 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHH
Confidence 433222 23555556777654
No 208
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=24.20 E-value=64 Score=35.98 Aligned_cols=59 Identities=14% Similarity=0.038 Sum_probs=41.4
Q ss_pred EEeeeCCCCCcccHHHHHHHHHHcCCCEEEEcee---CcccCCcCCeeeecCchhHHHHHHHHHHcCCE
Q 041957 28 SGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVF---WNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLY 93 (734)
Q Consensus 28 ~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~---W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~ 93 (734)
+-+.++.-+. ++.++.||++|+|.|++.|- -..++-.....+++ ++.+.++.++++|+.
T Consensus 90 t~e~~p~~l~----~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~---~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 90 TFEANPGDLT----KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEE---DVYEAIANAKKAGFD 151 (377)
T ss_pred EEEeCCCCCC----HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 3345544343 47788999999999999875 23333333445555 888999999999975
No 209
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.17 E-value=1.9e+02 Score=23.51 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
..++.++++|+.|++.|.+=-. . ++. .+.++.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh----~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDH----G------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeC----C------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 4778999999999999876321 1 222 4568889999999988743
No 210
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=24.12 E-value=1.5e+02 Score=32.43 Aligned_cols=63 Identities=10% Similarity=0.012 Sum_probs=41.3
Q ss_pred EEEeeeCCCCCcccHHHHHHHHHHcCCC-EEEEcee----Cccc-CCcCCeeeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 27 FSGSIHYPRSPREMWPSLISKAKEGGLD-VIQTYVF----WNLH-EPQPGKYDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 27 ~~G~~hy~r~~~~~W~~~l~k~ka~G~N-~v~~yv~----W~~h-Ep~~G~~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
++.+.++.-+. ++.|+.||++|++ .|++.+- ..+. --.+| ++++ ++.+.+++++++|+.|.+-
T Consensus 106 i~~esrpd~i~----~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~~---~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 106 VVVESRPEFID----EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STFE---DFIRAAELARKYGAGVKAY 174 (313)
T ss_pred EEEEeCCCcCC----HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCHH---HHHHHHHHHHHcCCcEEEE
Confidence 34444444343 6788899999999 4877654 2221 12333 3555 8889999999999986544
No 211
>PTZ00333 triosephosphate isomerase; Provisional
Probab=23.61 E-value=1.5e+02 Score=31.51 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
..++|++|++.|-+. |..++-.|.= .+..+.+=++.|.++||.+||+.|
T Consensus 82 ~~mL~d~G~~~viiG-----HSERR~~f~E-td~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTILG-----HSERRQYFGE-TNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEEC-----cccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEcC
Confidence 358999999988874 6666666643 356888889999999999999997
No 212
>PRK14565 triosephosphate isomerase; Provisional
Probab=23.53 E-value=1.5e+02 Score=31.30 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=34.6
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
.+++|++|++.|-+. |..++--|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~viiG-----HSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVILG-----HSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEEC-----cccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 458899999888763 55555554333 23343444899999999999998
No 213
>PLN02429 triosephosphate isomerase
Probab=23.38 E-value=1.4e+02 Score=32.80 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=31.8
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
..++|++|++.|-+. |..++-.|.=+ +..+.+=+..|.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~ViiG-----HSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVILG-----HSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEeC-----ccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 457788888777663 55555544322 22333334449999999999997
No 214
>PRK09739 hypothetical protein; Provisional
Probab=23.16 E-value=1.6e+02 Score=29.56 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=53.5
Q ss_pred EEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCccc-CCcCCeee---ec-----CchhHHHHHHHHHHcCC
Q 041957 22 ERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLH-EPQPGKYD---FS-----GRRDLVRFIKEIQAQGL 92 (734)
Q Consensus 22 ~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~h-Ep~~G~~d---f~-----g~~dl~~fl~~a~~~gl 92 (734)
..++++.|+-+..+.....=+..++.+++.|. .|++.-....+ .|.-+.-+ |. -..++++.++..++++.
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~-~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGH-QVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA 82 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCC-EEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence 45788888877655566667777788888884 34333223321 12222111 11 12478999999999999
Q ss_pred EEEEeeCccccccccCCCCCccc
Q 041957 93 YASIRIGPFIQSEWSYGGLPFWL 115 (734)
Q Consensus 93 ~vilr~GPyi~aE~~~Gg~P~Wl 115 (734)
.||.-| +| ++++|+=|
T Consensus 83 iV~~~P------~y-~~~~Pa~L 98 (199)
T PRK09739 83 LVFVFP------LW-WYSFPAML 98 (199)
T ss_pred EEEECc------hh-hhcchHHH
Confidence 999877 45 56666533
No 215
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=23.00 E-value=1.2e+02 Score=32.83 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=47.6
Q ss_pred CEEeE-EEEEeeeCCC-CCcccHHHHHHHHHHcCCCEEEEceeCcc-cCC--------cCCeeeecCchhHHHHHHHHHH
Q 041957 21 GERKV-LFSGSIHYPR-SPREMWPSLISKAKEGGLDVIQTYVFWNL-HEP--------QPGKYDFSGRRDLVRFIKEIQA 89 (734)
Q Consensus 21 g~~~~-~~~G~~hy~r-~~~~~W~~~l~k~ka~G~N~v~~yv~W~~-hEp--------~~G~~df~g~~dl~~fl~~a~~ 89 (734)
.++++ +.-|.-+..| ||.++|.+.++++.+.|+..| +.+.- .|. ....-+..|..+|.+++.+.+.
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~iv---l~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIK---LPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEE---EeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHh
Confidence 34554 3445545544 899999999999988887654 33321 111 0112456666777777777777
Q ss_pred cCCEEEEeeCc
Q 041957 90 QGLYASIRIGP 100 (734)
Q Consensus 90 ~gl~vilr~GP 100 (734)
..+.|=--.||
T Consensus 254 a~l~I~nDSGp 264 (322)
T PRK10964 254 AKAVVSVDTGL 264 (322)
T ss_pred CCEEEecCCcH
Confidence 77766555554
No 216
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=22.99 E-value=1.2e+02 Score=33.00 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=51.2
Q ss_pred EeE-EEEEeeeCC-CCCcccHHHHHHHHHHcCCCEEEEceeC-------cc-cC--CcCCeeeecCchhHHHHHHHHHHc
Q 041957 23 RKV-LFSGSIHYP-RSPREMWPSLISKAKEGGLDVIQTYVFW-------NL-HE--PQPGKYDFSGRRDLVRFIKEIQAQ 90 (734)
Q Consensus 23 ~~~-~~~G~~hy~-r~~~~~W~~~l~k~ka~G~N~v~~yv~W-------~~-hE--p~~G~~df~g~~dl~~fl~~a~~~ 90 (734)
+++ +..|+-+.. |||.+.|.+.++++.+.|+..|=++-+- .. .+ +.+...|+.|..+|.+++.+.+..
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 261 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHA 261 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhC
Confidence 443 333444443 4899999999999988787765443221 00 01 223467888888899998888888
Q ss_pred CCEEEEeeCc
Q 041957 91 GLYASIRIGP 100 (734)
Q Consensus 91 gl~vilr~GP 100 (734)
.+.|=--.||
T Consensus 262 ~l~Vs~DSGp 271 (344)
T TIGR02201 262 RLFIGVDSVP 271 (344)
T ss_pred CEEEecCCHH
Confidence 8877666665
No 217
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.83 E-value=1.6e+02 Score=31.35 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 45 ISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 45 l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
..++|++|++.|-+. |..++=-|+=+ +..+..=++.|+++||.+||+.|
T Consensus 81 ~~mL~d~G~~~viiG-----HSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLIG-----HSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEEC-----ccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 458899999988764 55555444433 34577888999999999999997
No 218
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=22.78 E-value=3.9e+02 Score=26.91 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHc-CCEEEEeeCcccccc-----ccCCCCCcccccCCC
Q 041957 79 DLVRFIKEIQAQ-GLYASIRIGPFIQSE-----WSYGGLPFWLHDVPG 120 (734)
Q Consensus 79 dl~~fl~~a~~~-gl~vilr~GPyi~aE-----~~~Gg~P~Wl~~~p~ 120 (734)
++.+|++..+++ |.+++|=.+++.... -.....|.|+.+.+.
T Consensus 115 ~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 162 (199)
T cd06412 115 WIKDFSDTYKARTGRDPVIYTTTSWWNQCTGNSAGFANHPLWLARYGS 162 (199)
T ss_pred HHHHHHHHHHHHHCCCcEEEecHHHHHHhccCcchhcCCCeEEEecCC
Confidence 578999988885 988888888754222 134578999987553
No 219
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.63 E-value=2.8e+02 Score=22.39 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccCCcCC--eeeecCchhHHHHHHHHHHcCCEEE
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHEPQPG--KYDFSGRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G--~~df~g~~dl~~fl~~a~~~gl~vi 95 (734)
..-.+.++.+.+.|+|..+++.. ...++... .+.+++ .+.+++++..++.|..|+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~-~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVY-PSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEe-ccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 45667888899999999999864 11112222 344544 466799999999998665
No 220
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.31 E-value=1.1e+02 Score=31.98 Aligned_cols=74 Identities=27% Similarity=0.271 Sum_probs=46.7
Q ss_pred eEEEEEeeeCC---CCCcccHHHHHHHHHHcCCCEEEEce--eCcccCCcCCeeeecCchhHHHHHHHHHHcCCEE-EEe
Q 041957 24 KVLFSGSIHYP---RSPREMWPSLISKAKEGGLDVIQTYV--FWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYA-SIR 97 (734)
Q Consensus 24 ~~~~~G~~hy~---r~~~~~W~~~l~k~ka~G~N~v~~yv--~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~v-ilr 97 (734)
+-+..++.|.. +.+++..++.-+.+++.|+.. +..- +-|+..|.|....-+ ...+.+.+++|++.|..+ ++.
T Consensus 27 vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l-s~h~p~~~nl~s~d~~~r~~~-~~~l~~~i~~A~~lGa~~vv~h 104 (273)
T smart00518 27 FQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDV-SVHAPYLINLASPDKEKVEKS-IERLIDEIKRCEELGIKALVFH 104 (273)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE-EEECCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEEc
Confidence 34455555544 466777777778888899974 3322 235666555444432 236888999999999974 455
Q ss_pred eC
Q 041957 98 IG 99 (734)
Q Consensus 98 ~G 99 (734)
+|
T Consensus 105 ~g 106 (273)
T smart00518 105 PG 106 (273)
T ss_pred cc
Confidence 54
No 221
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=22.22 E-value=70 Score=32.91 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=62.7
Q ss_pred CceEEEEECCeeceeccccccCC--C---C--------CCceeeeccCCCccCCCCcEEEEEEecCCCCcceeeeeecCc
Q 041957 578 MRKGEARVNGRSIGRYWPSLITP--R---G--------EPSQISYNIPRSFLKPTGNLLVLLEEEGGDPLSITLEKLEAK 644 (734)
Q Consensus 578 ~gKG~v~VNG~nlGRYW~~~~~~--~---g--------GPQqtlYhVP~~~Lk~g~N~ivifEe~g~~p~~I~~~t~Ce~ 644 (734)
=.+|.|||||++|.|.=-.- -+ . | =|+.|.| +|.-.-+|-.|..+..|+ ..+|+-
T Consensus 54 pt~G~i~~~~~dl~~l~~~~-iP~LRR~IGvVFQD~rLL~~~tvy----------eNVA~pL~v~G~~~~~i~-~rV~~~ 121 (223)
T COG2884 54 PTRGKILVNGHDLSRLKGRE-IPFLRRQIGVVFQDFRLLPDRTVY----------ENVALPLRVIGKPPREIR-RRVSEV 121 (223)
T ss_pred CCCceEEECCeecccccccc-cchhhheeeeEeeeccccccchHh----------hhhhhhhhccCCCHHHHH-HHHHHH
Confidence 36799999999999985211 00 0 1 1333333 666666666676665443 222221
Q ss_pred -------------eEEEEcCCCCeEEEEeeeccCCCCCCCCCCCcccccccCCChHHHHH--HHcCCCCccEEeeC
Q 041957 645 -------------VVHLQCAPTWYITKILFASYGTPFGGCGRDGHAIGYCDSPNSKFAAE--KACLGKRSCLIPAS 705 (734)
Q Consensus 645 -------------~~~L~C~~g~~I~~I~~A~YGr~~~~C~~~~~~~~~C~~~~sl~~V~--~~C~Gk~~C~i~a~ 705 (734)
..+||-++-|.+. |--|.-.+|.-.-.. ...+|-.-+.|..++. ..-|..-.-.|-|+
T Consensus 122 L~~VgL~~k~~~lP~~LSGGEQQRva-IARAiV~~P~vLlAD--EPTGNLDp~~s~~im~lfeeinr~GtTVl~AT 194 (223)
T COG2884 122 LDLVGLKHKARALPSQLSGGEQQRVA-IARAIVNQPAVLLAD--EPTGNLDPDLSWEIMRLFEEINRLGTTVLMAT 194 (223)
T ss_pred HHHhccchhhhcCccccCchHHHHHH-HHHHHccCCCeEeec--CCCCCCChHHHHHHHHHHHHHhhcCcEEEEEe
Confidence 7788888878886 888888888722111 1233333344444443 33444444444444
No 222
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.85 E-value=1.7e+02 Score=30.61 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=39.0
Q ss_pred EEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEc-eeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 27 FSGSIHYPRSPREMWPSLISKAKEGGLDVIQTY-VFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 27 ~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~y-v~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
+++-+.++...++.| +++++++|.+.|.+. .+... ++ ++.++++.|+++||.+++-.-
T Consensus 79 lM~y~n~~~~~~~~~---i~~~~~~Gadgvii~dlp~e~---------~~---~~~~~~~~~~~~Gl~~~~~v~ 137 (244)
T PRK13125 79 LMTYLEDYVDSLDNF---LNMARDVGADGVLFPDLLIDY---------PD---DLEKYVEIIKNKGLKPVFFTS 137 (244)
T ss_pred EEEecchhhhCHHHH---HHHHHHcCCCEEEECCCCCCc---------HH---HHHHHHHHHHHcCCCEEEEEC
Confidence 444444444455544 678899999999984 11111 11 678999999999999887663
No 223
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.81 E-value=1.7e+02 Score=32.35 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 43 SLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 43 ~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
++++++.+.|+..|++..+++..+ .+...++.|+++|+.|.+-+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~------------~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEAD------------VSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHH------------HHHHHHHHHHHCCCeEEEEE
Confidence 678999999999999988665432 57899999999999987665
No 224
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=21.76 E-value=1.3e+02 Score=31.12 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeec-CchhHHHHHHHHHHcCC
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFS-GRRDLVRFIKEIQAQGL 92 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~-g~~dl~~fl~~a~~~gl 92 (734)
.+.+++..++.++++|+.++.+|..... ....|..+ |..+=..-+++|+++|+
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~ 103 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF 103 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC
Confidence 5788999999999999999999998866 23334444 77899999999999998
No 225
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.59 E-value=4e+02 Score=20.88 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCcccCCcCCe----eeec--CchhHHHHHHHHHHcCCEEE
Q 041957 38 REMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGK----YDFS--GRRDLVRFIKEIQAQGLYAS 95 (734)
Q Consensus 38 ~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~----~df~--g~~dl~~fl~~a~~~gl~vi 95 (734)
|....+.++.+.+.|+|.+++...=...+-..|. +.++ +..+++.+++..++.|..|.
T Consensus 9 ~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 9 PGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 4567899999999999999876431111001233 3333 33578899999999997664
No 226
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=21.57 E-value=1.5e+02 Score=35.56 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=61.0
Q ss_pred CCEEeEEEEEeeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEeeC
Q 041957 20 NGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIG 99 (734)
Q Consensus 20 dg~~~~~~~G~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~G 99 (734)
++++-+.+++..|+.+.+.+.=-++|++-.++|..-+-|-.+++. + .+.+|++.+++.++.||...-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEee
Confidence 345568899999987765544445666667899999999887654 3 788999999888888888877
Q ss_pred cccc--------ccccCCCCCccccc
Q 041957 100 PFIQ--------SEWSYGGLPFWLHD 117 (734)
Q Consensus 100 Pyi~--------aE~~~Gg~P~Wl~~ 117 (734)
|-.. .+|..-=+|.|+.+
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~ 551 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRE 551 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHH
Confidence 7433 23444446888765
No 227
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.52 E-value=3.5e+02 Score=30.31 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=52.3
Q ss_pred EEECCEEeEEEEEeeeCCCC-CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecC--chhHHHHHHHHHHcCCE
Q 041957 17 LIINGERKVLFSGSIHYPRS-PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSG--RRDLVRFIKEIQAQGLY 93 (734)
Q Consensus 17 ~~~dg~~~~~~~G~~hy~r~-~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g--~~dl~~fl~~a~~~gl~ 93 (734)
+.+.|...+++.|.- -+ ..+.-.+.-+.+|++|+..+.-..|= |+.--|.|.| ...+..+-+.|++.||.
T Consensus 112 ~~~g~~~~~~iaGpc---~iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~~~~~~Gl~ 184 (360)
T PRK12595 112 EVIGDGNQSFIFGPC---SVESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQVADEYGLA 184 (360)
T ss_pred EEecCCCeeeEEecc---cccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHHHHHHcCCC
Confidence 555544444455651 11 35666778888999999988866554 5555567764 46888889999999999
Q ss_pred EEEee
Q 041957 94 ASIRI 98 (734)
Q Consensus 94 vilr~ 98 (734)
++-.|
T Consensus 185 ~~t~v 189 (360)
T PRK12595 185 VISEI 189 (360)
T ss_pred EEEee
Confidence 98776
No 228
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.47 E-value=1.4e+02 Score=31.74 Aligned_cols=139 Identities=11% Similarity=0.047 Sum_probs=80.9
Q ss_pred CCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHH-HcCCEEEEeeCccccccccCCCC
Q 041957 33 YPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQ-AQGLYASIRIGPFIQSEWSYGGL 111 (734)
Q Consensus 33 y~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~-~~gl~vilr~GPyi~aE~~~Gg~ 111 (734)
-.+...+.=.+..+.+-++|++.|++..+....+...|..-|.....+.++.+..+ +.-+-+++|++-. -
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~ 84 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND---------D 84 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC---------C
Confidence 34557777788999999999999999998887666777777775445555555543 4445566777521 1
Q ss_pred Cccccc--CCCcc-ccCCChh--HH---HHHHHHhhcCCCEEEEcccccccceecccCCCChHHHHHHHHHHHhcCCccc
Q 041957 112 PFWLHD--VPGIT-FRCDNEP--FK---KMKRLYASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVP 183 (734)
Q Consensus 112 P~Wl~~--~p~~~-~R~~~~~--y~---~~~~~~~~~ggpiI~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp 183 (734)
..++.. ..++. +|...+. .. +..++ +++.|--+.+++|.=++ .+.+|+..+.+.+.+.|.+.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~-ak~~G~~v~~~~~~a~~--------~~~~~~~~~~~~~~~~g~~~- 154 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKHEFDEALPLIKA-IKEKGYEVFFNLMAISG--------YSDEELLELLELVNEIKPDV- 154 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccccHHHHHHHHHH-HHHCCCeEEEEEEeecC--------CCHHHHHHHHHHHHhCCCCE-
Confidence 122221 12221 3332221 11 23333 34344445566654332 34567777777777788774
Q ss_pred eEEecCC
Q 041957 184 WVMCKQD 190 (734)
Q Consensus 184 ~~~~~~~ 190 (734)
+..+|+.
T Consensus 155 i~l~DT~ 161 (266)
T cd07944 155 FYIVDSF 161 (266)
T ss_pred EEEecCC
Confidence 4555543
No 229
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=21.40 E-value=1.3e+02 Score=36.65 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEc---------------eeCcccCCcCCeeeecCchhHHH-HHHHHHHcCCEEEEeeCccc
Q 041957 39 EMWPSLISKAKEGGLDVIQTY---------------VFWNLHEPQPGKYDFSGRRDLVR-FIKEIQAQGLYASIRIGPFI 102 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~y---------------v~W~~hEp~~G~~df~g~~dl~~-fl~~a~~~gl~vilr~GPyi 102 (734)
+--...|+++|+.|+|||-.- .+| -|=| |+-|. +++ ...+++++|++|..+-.||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~-----f~~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADL-----FNRVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCC-----cCHHHHHHHHhhCCEEEEecccee
Confidence 446788999999999999754 456 3333 33321 112 34568999999999998885
No 230
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.02 E-value=5e+02 Score=29.10 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=53.2
Q ss_pred EEEC-CEEeEEEEEeeeCCCC-CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecC--chhHHHHHHHHHHcCC
Q 041957 17 LIIN-GERKVLFSGSIHYPRS-PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSG--RRDLVRFIKEIQAQGL 92 (734)
Q Consensus 17 ~~~d-g~~~~~~~G~~hy~r~-~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g--~~dl~~fl~~a~~~gl 92 (734)
+.+. ++|++++.| +=-+ .+++-.+.-+.+|++|...++-+.|= |+---|.|.| ..-|.-+-+.+++.||
T Consensus 94 v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L~~~~~e~Gl 166 (352)
T PRK13396 94 VPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELLAAAREATGL 166 (352)
T ss_pred eEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHHHHHHHHcCC
Confidence 4444 567888888 3223 55667788899999999999976654 5555577764 3456666667788999
Q ss_pred EEEEee
Q 041957 93 YASIRI 98 (734)
Q Consensus 93 ~vilr~ 98 (734)
.++-.+
T Consensus 167 ~~~tev 172 (352)
T PRK13396 167 GIITEV 172 (352)
T ss_pred cEEEee
Confidence 988665
No 231
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.98 E-value=1.4e+02 Score=35.13 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=49.5
Q ss_pred ECCEEeEEEEEee--eCCC-CCcccHHHHHHHHHHcCCCEEEEcee-----------CcccCCcCCeeeecCchhHHHHH
Q 041957 19 INGERKVLFSGSI--HYPR-SPREMWPSLISKAKEGGLDVIQTYVF-----------WNLHEPQPGKYDFSGRRDLVRFI 84 (734)
Q Consensus 19 ~dg~~~~~~~G~~--hy~r-~~~~~W~~~l~k~ka~G~N~v~~yv~-----------W~~hEp~~G~~df~g~~dl~~fl 84 (734)
-+|+|-+|. |-+ .|-| |.+|+=++.+++++.+|++ +|.. |-- -|.-+-..-|..+|
T Consensus 11 A~g~r~fiC-GVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlYAPKDDyKHR~~WRE------lY~vEEa~~L~~Li 80 (891)
T KOG3698|consen 11 AVGNRKFIC-GVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLYAPKDDYKHRSLWRE------LYNVEEATYLRNLI 80 (891)
T ss_pred ccccceeEE-EeeccccCCCCCHHHHHHHHHHHHhcccc---eeeecccchhHHHHHHHH------HhhhHHHHHHHHHH
Confidence 456665554 444 4778 6999999999999999999 5543 431 12223334688999
Q ss_pred HHHHHcCCEEEEee
Q 041957 85 KEIQAQGLYASIRI 98 (734)
Q Consensus 85 ~~a~~~gl~vilr~ 98 (734)
+.|+++++..+-.+
T Consensus 81 ~aAke~~i~F~YAi 94 (891)
T KOG3698|consen 81 EAAKENNINFVYAI 94 (891)
T ss_pred HHHHhcCceEEEEc
Confidence 99999999977444
No 232
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.78 E-value=1.8e+02 Score=32.10 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 42 PSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 42 ~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.++|+++.+.|+..|++..+.+..+ .+...++.|++.|+.|..-+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d------------~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEAD------------VSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHH------------HHHHHHHHHHHcCCeEEEEE
Confidence 3678999999999999988654332 57899999999999988654
No 233
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.73 E-value=2.4e+02 Score=29.82 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=28.1
Q ss_pred EEeeeCCCCCc--ccHHHHHHHHHHcCCCEEEEcee
Q 041957 28 SGSIHYPRSPR--EMWPSLISKAKEGGLDVIQTYVF 61 (734)
Q Consensus 28 ~G~~hy~r~~~--~~W~~~l~k~ka~G~N~v~~yv~ 61 (734)
=+++|.|..+| +.|.+.+++|++.|.+.|-+-+.
T Consensus 139 I~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~ 174 (253)
T PRK02412 139 VLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVM 174 (253)
T ss_pred EEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEec
Confidence 34899999877 45678999999999999988765
No 234
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=20.44 E-value=1.5e+02 Score=34.74 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCcccCCc---CCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 40 MWPSLISKAKEGGLDVIQTYVFWNLHEPQ---PGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 40 ~W~~~l~k~ka~G~N~v~~yv~W~~hEp~---~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
.++++++.||++|++.-+.-|-|.-.=|. .+.-+-.|......+|+...++||..++-.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL 153 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL 153 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 58999999999999999999999987774 356788888889999999999999866654
No 235
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=20.32 E-value=2.7e+02 Score=33.25 Aligned_cols=74 Identities=20% Similarity=0.114 Sum_probs=45.2
Q ss_pred ceEEEEECCeeceeccccccCCCCCCceeeeccCCCccCCCCcEEEE-EEecCCCCcceeeeeecCc----eEEEEcCCC
Q 041957 579 RKGEARVNGRSIGRYWPSLITPRGEPSQISYNIPRSFLKPTGNLLVL-LEEEGGDPLSITLEKLEAK----VVHLQCAPT 653 (734)
Q Consensus 579 gKG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~~Lk~g~N~ivi-fEe~g~~p~~I~~~t~Ce~----~~~L~C~~g 653 (734)
..=.|+|||+.||-+=.......+.-..++. || .+++.|.|.|-+ |+...... ..|+. .....=...
T Consensus 361 S~l~V~vNg~~i~s~~L~~~~~~~~~~~~v~-iP-~~~~~~~N~l~~~f~l~~~~~------~~C~~~~~~~~~~~I~~~ 432 (605)
T PF03170_consen 361 SRLTVYVNGQFIGSLPLTPADGAGFDRYTVS-IP-RLLLPGRNQLQFEFDLPPADD------GPCQPTAPDNPRAAIDPD 432 (605)
T ss_pred cEEEEEECCEEEEeEECCCCCCCccceeEEe-cC-chhcCCCcEEEEEEEeecCCC------CcCcCCCCCCceEEECCC
Confidence 3457999999999875331112234566777 99 999999999987 45443221 14777 233333344
Q ss_pred CeEEEEee
Q 041957 654 WYITKILF 661 (734)
Q Consensus 654 ~~I~~I~~ 661 (734)
.+|. |..
T Consensus 433 S~i~-l~~ 439 (605)
T PF03170_consen 433 STID-LPG 439 (605)
T ss_pred cEEE-ccC
Confidence 5665 553
No 236
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.26 E-value=2.2e+02 Score=28.61 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=38.2
Q ss_pred eeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCEEEEe
Q 041957 30 SIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLYASIR 97 (734)
Q Consensus 30 ~~hy~r~~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~vilr 97 (734)
.+|-. .+..| .+++++++|.+.|.+..... ...+.++++.|+++|+.+++-
T Consensus 58 d~k~~--d~~~~--~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 58 DLKTM--DAGEY--EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeec--cchHH--HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 45543 34434 68899999999999876542 136889999999999998875
No 237
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.21 E-value=1.1e+02 Score=31.63 Aligned_cols=59 Identities=14% Similarity=-0.041 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCcccC-CcCCeeeecCchhHHHHHHHHHHcCCEEEEee
Q 041957 39 EMWPSLISKAKEGGLDVIQTYVFWNLHE-PQPGKYDFSGRRDLVRFIKEIQAQGLYASIRI 98 (734)
Q Consensus 39 ~~W~~~l~k~ka~G~N~v~~yv~W~~hE-p~~G~~df~g~~dl~~fl~~a~~~gl~vilr~ 98 (734)
+.+++.++.++++|..+|.+...+.--+ +.+-.+. .-...+.++.+.|++.|+.+.+-|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5678889999999999997643221000 0010010 012368888999999999998887
No 238
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=20.15 E-value=1.4e+02 Score=33.96 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=45.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCcccCCcCCeeeecCchhHHHHHHHHHHcCCE-EEEeeCccccccccCCCCCc
Q 041957 37 PREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRRDLVRFIKEIQAQGLY-ASIRIGPFIQSEWSYGGLPF 113 (734)
Q Consensus 37 ~~~~W~~~l~k~ka~G~N~v~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~gl~-vilr~GPyi~aE~~~Gg~P~ 113 (734)
..+.-+..|+.+|+.|+|+|-++.+=.---+.+-.|.=+ ..|-+.+++++.+.|.. .+|-. .||+|.
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~Ldi---------GGGf~g 258 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDI---------GGGFPG 258 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeec---------CCCCCC
Confidence 445567899999999999999987644322222222211 23666778888899988 55776 477775
Done!