Query 041958
Match_columns 126
No_of_seqs 106 out of 620
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02150 terpene synthase/cycl 99.9 8.5E-28 1.8E-32 168.1 7.3 73 38-112 1-96 (96)
2 PLN02279 ent-kaur-16-ene synth 99.9 4.5E-25 9.9E-30 198.8 8.7 106 2-113 650-779 (784)
3 cd00684 Terpene_cyclase_plant_ 99.9 2E-24 4.4E-29 187.3 10.4 102 4-109 418-542 (542)
4 cd00868 Terpene_cyclase_C1 Ter 99.3 8.7E-12 1.9E-16 97.5 9.3 75 14-91 193-279 (284)
5 PF03936 Terpene_synth_C: Terp 99.2 3E-11 6.6E-16 93.8 5.4 63 14-79 208-270 (270)
6 PLN02592 ent-copalyl diphospha 99.2 6.7E-11 1.5E-15 107.6 7.7 82 13-111 700-800 (800)
7 cd00687 Terpene_cyclase_nonpla 99.2 6.7E-11 1.4E-15 94.4 6.5 63 14-79 199-262 (303)
8 cd00385 Isoprenoid_Biosyn_C1 I 98.4 6.1E-07 1.3E-11 66.1 6.4 63 14-79 146-221 (243)
9 KOG1719 Dual specificity phosp 88.5 0.38 8.2E-06 37.2 2.4 63 14-79 93-164 (183)
10 cd00686 Terpene_cyclase_cis_tr 83.7 3.4 7.3E-05 35.3 5.9 42 27-70 223-265 (357)
11 COG3707 AmiR Response regulato 77.1 3.8 8.1E-05 32.3 3.8 51 27-79 130-181 (194)
12 PF12368 DUF3650: Protein of u 71.8 3.1 6.7E-05 23.1 1.6 18 49-68 9-26 (28)
13 PF06330 TRI5: Trichodiene syn 69.2 16 0.00034 31.6 6.0 45 27-73 223-269 (376)
14 PF01713 Smr: Smr domain; Int 64.3 9.6 0.00021 24.8 3.1 22 54-77 4-25 (83)
15 smart00463 SMR Small MutS-rela 63.8 11 0.00023 24.4 3.3 22 54-77 7-28 (80)
16 PF03000 NPH3: NPH3 family; I 61.7 8.8 0.00019 31.2 3.0 54 6-71 194-248 (258)
17 PF03861 ANTAR: ANTAR domain; 58.0 14 0.0003 22.7 2.8 35 42-78 14-48 (56)
18 PF10100 DUF2338: Uncharacteri 51.2 24 0.00052 31.0 4.1 57 57-119 246-335 (429)
19 PF10397 ADSL_C: Adenylosuccin 48.3 27 0.00059 22.9 3.2 44 45-90 7-50 (81)
20 PTZ00393 protein tyrosine phos 47.6 17 0.00038 29.4 2.6 28 41-70 182-209 (241)
21 COG1308 EGD2 Transcription fac 45.7 22 0.00048 26.1 2.6 22 46-69 87-108 (122)
22 PF05402 PqqD: Coenzyme PQQ sy 44.7 60 0.0013 19.9 4.3 32 43-76 32-63 (68)
23 PF13427 DUF4111: Domain of un 42.4 61 0.0013 22.6 4.4 35 58-92 8-44 (106)
24 COG4408 Uncharacterized protei 40.8 62 0.0013 28.2 4.9 60 57-121 248-339 (431)
25 PF09682 Holin_LLH: Phage holi 38.2 40 0.00087 23.5 3.0 32 44-79 74-105 (108)
26 PF08285 DPM3: Dolichol-phosph 36.2 46 0.001 22.9 3.0 20 59-78 65-84 (91)
27 smart00400 ZnF_CHCC zinc finge 34.9 47 0.001 20.1 2.6 21 45-67 34-54 (55)
28 smart00195 DSPc Dual specifici 33.2 44 0.00095 23.1 2.5 25 43-69 92-117 (138)
29 cd05173 PI3Kc_IA_beta Phosphoi 33.1 52 0.0011 28.1 3.4 26 49-76 317-345 (362)
30 PF13348 Y_phosphatase3C: Tyro 32.8 52 0.0011 20.5 2.6 22 46-70 44-66 (68)
31 PHA01748 hypothetical protein 32.4 1E+02 0.0022 19.4 3.9 31 45-77 15-46 (60)
32 PF08356 EF_assoc_2: EF hand a 32.0 52 0.0011 22.7 2.7 38 84-122 49-86 (89)
33 PF00782 DSPc: Dual specificit 31.7 48 0.001 22.7 2.5 25 44-70 88-113 (133)
34 cd00895 PI3Kc_C2_beta Phosphoi 31.6 87 0.0019 26.7 4.5 24 49-74 311-337 (354)
35 PF02372 IL15: Interleukin 15; 30.1 77 0.0017 23.2 3.5 36 43-79 55-92 (135)
36 cd07921 PCA_45_Doxase_A_like S 29.5 50 0.0011 23.6 2.3 26 48-79 37-62 (106)
37 cd05176 PI3Kc_C2_alpha Phospho 29.5 93 0.002 26.5 4.3 24 49-74 310-336 (353)
38 PF12550 GCR1_C: Transcription 29.2 81 0.0018 20.7 3.2 54 14-69 26-79 (81)
39 cd07922 CarBa CarBa is the A s 29.1 96 0.0021 21.0 3.5 36 48-89 28-68 (81)
40 PRK06369 nac nascent polypepti 28.1 59 0.0013 23.6 2.5 27 41-69 74-100 (115)
41 cd00894 PI3Kc_IB_gamma Phospho 28.1 61 0.0013 27.7 3.0 25 49-75 321-348 (365)
42 KOG3208 SNARE protein GS28 [In 28.1 43 0.00093 27.1 1.9 45 27-78 125-169 (231)
43 PTZ00242 protein tyrosine phos 28.0 49 0.0011 24.6 2.2 29 41-70 110-138 (166)
44 TIGR00264 alpha-NAC-related pr 27.9 60 0.0013 23.6 2.5 25 43-69 78-102 (116)
45 cd00737 endolysin_autolysin En 27.0 1.4E+02 0.0029 21.1 4.3 22 58-79 43-64 (133)
46 PF10249 NDUFB10: NADH-ubiquin 26.8 33 0.00072 25.3 1.0 14 41-54 107-120 (128)
47 cd05175 PI3Kc_IA_alpha Phospho 26.8 52 0.0011 28.2 2.3 26 46-74 320-348 (366)
48 cd05165 PI3Kc_I Phosphoinositi 26.2 69 0.0015 27.4 3.0 26 49-76 322-350 (366)
49 cd05174 PI3Kc_IA_delta Phospho 25.6 83 0.0018 26.9 3.3 27 46-75 315-344 (361)
50 PF15581 Imm35: Immunity prote 25.1 1.1E+02 0.0025 21.3 3.4 39 49-89 19-58 (93)
51 cd05177 PI3Kc_C2_gamma Phospho 24.3 77 0.0017 27.0 2.9 26 49-76 311-339 (354)
52 COG2937 PlsB Glycerol-3-phosph 24.0 1.4E+02 0.0031 28.2 4.7 33 45-79 227-259 (810)
53 PRK13735 conjugal transfer mat 23.7 56 0.0012 31.5 2.1 30 40-71 587-616 (942)
54 cd05166 PI3Kc_II Phosphoinosit 23.2 84 0.0018 26.6 2.9 29 46-75 308-337 (353)
55 cd00891 PI3Kc Phosphoinositide 22.8 86 0.0019 26.5 2.9 31 45-76 306-337 (352)
56 KOG0506 Glutaminase (contains 22.2 45 0.00097 30.2 1.1 26 30-55 326-351 (622)
57 PF12469 DUF3692: CRISPR-assoc 22.2 1.2E+02 0.0027 21.2 3.2 20 59-78 94-113 (117)
58 KOG1720 Protein tyrosine phosp 22.1 82 0.0018 25.4 2.5 28 41-70 159-187 (225)
59 cd00896 PI3Kc_III Phosphoinosi 21.4 2E+02 0.0044 24.3 4.9 28 49-76 305-333 (350)
60 KOG0186 Proline oxidase [Amino 21.3 78 0.0017 28.4 2.4 58 7-76 288-347 (506)
61 COG2840 Uncharacterized protei 20.9 1.3E+02 0.0027 23.5 3.3 36 38-77 88-123 (184)
62 PF08769 Spo0A_C: Sporulation 20.7 1.5E+02 0.0031 20.8 3.3 24 52-77 48-71 (106)
63 PRK04946 hypothetical protein; 20.5 1.3E+02 0.0028 23.2 3.3 36 38-77 87-122 (181)
64 TIGR03859 PQQ_PqqD coenzyme PQ 20.4 1.8E+02 0.0038 19.1 3.5 29 43-74 46-74 (81)
No 1
>PLN02150 terpene synthase/cyclase family protein
Probab=99.95 E-value=8.5e-28 Score=168.09 Aligned_cols=73 Identities=22% Similarity=0.515 Sum_probs=68.8
Q ss_pred HhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHhh-----c----CCCCC
Q 041958 38 LARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL-----------PYLKLQLNFVES-----Y----DYGVQ 97 (126)
Q Consensus 38 ~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln-----------~~~~~~lNlaRv-----Y----gyt~~ 97 (126)
|+|||++|+|+||||||| +|+|||+++|+++|+++||+|| +++++++|+||+ | |||.+
T Consensus 1 ~~rg~vaSsIeCYMke~g--~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~ 78 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHG--VTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYP 78 (96)
T ss_pred CCCCcchHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCC
Confidence 579999999999999999 9999999999999999999999 899999999998 5 89987
Q ss_pred Chhhhh---hhccccccC
Q 041958 98 NQETMD---TLLFQPILE 112 (126)
Q Consensus 98 ~~~~k~---sll~~Pi~~ 112 (126)
+..+|+ +||++||++
T Consensus 79 ~~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 79 HGKLKDLITSLFFHPLPL 96 (96)
T ss_pred cHHHHHHHHHHhccCCCC
Confidence 778999 999999974
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=99.91 E-value=4.5e-25 Score=198.76 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=95.5
Q ss_pred cchhhhhcccchhHHHHHHHHHhHHhcCcchhhHHHHhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh--
Q 041958 2 SMDLLDDLELFIDTFERFGRTCLRSLNSGELASKEELARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL-- 79 (126)
Q Consensus 2 ~~~~~~~~~~~~p~i~~~~~~i~R~L~nDi~s~k~E~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln-- 79 (126)
++++++..++ |+|+++++.|+| |+|||+||++|++||++ |+|+|||+||++++|+|||+++++++|+++||+||
T Consensus 650 ~eev~e~~~~--~~L~~l~s~I~R-LlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~ 725 (784)
T PLN02279 650 SEEVVDSPEL--HKLYKLMSTCGR-LLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRL 725 (784)
T ss_pred CHHHHhCcch--hHHHHHHHHHHH-HHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777655 999999999999 99999999999999998 99999999972129999999999999999999998
Q ss_pred -----------hHHHHHHHHHhh----c----CCCCCChhhhh---hhccccccCC
Q 041958 80 -----------PYLKLQLNFVES----Y----DYGVQNQETMD---TLLFQPILED 113 (126)
Q Consensus 80 -----------~~~~~~lNlaRv----Y----gyt~~~~~~k~---sll~~Pi~~~ 113 (126)
+|++++||+||+ | |||. .+||+ +||++||++.
T Consensus 726 ~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~--~~~k~~i~~ll~ePi~l~ 779 (784)
T PLN02279 726 VLQEKGSNVPRECKDLFWKMSKVLHLFYRKDDGFTS--NDMMSLVKSVIYEPVSLQ 779 (784)
T ss_pred HhccCCCCCCHHHHHHHHHHHHhhhhheeCCCCCCh--HHHHHHHHHHhccCCcCC
Confidence 899999999999 6 8886 37999 9999999854
No 3
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=99.91 E-value=2e-24 Score=187.30 Aligned_cols=102 Identities=30% Similarity=0.506 Sum_probs=93.3
Q ss_pred hhhhhcccchhHHHHHHHHHhHHhcCcchhhHHHHhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh----
Q 041958 4 DLLDDLELFIDTFERFGRTCLRSLNSGELASKEELARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL---- 79 (126)
Q Consensus 4 ~~~~~~~~~~p~i~~~~~~i~R~L~nDi~s~k~E~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln---- 79 (126)
++++.+.. +|+++++++.++| |+|||+||++|+++|+++|+|+|||+|+| +|+|+|+++++++|+++||+||
T Consensus 418 e~~e~~~~-~~~l~~~~~~i~r-L~NDi~S~~kE~~rGdv~n~V~~ymke~g--~s~eeA~~~i~~~ie~~wk~ln~e~l 493 (542)
T cd00684 418 EAFEWLES-RPKLVRASSTIGR-LMNDIATYEDEMKRGDVASSIECYMKEYG--VSEEEAREEIKKMIEDAWKELNEEFL 493 (542)
T ss_pred HHHHHHhc-cHHHHHHHHHHHH-HhcChhhhHHHHhcCCcccHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444443 3899999999999 99999999999999999999999999999 9999999999999999999999
Q ss_pred --------hHHHHHHHHHhh----c----CCCCCChhhhh---hhcccc
Q 041958 80 --------PYLKLQLNFVES----Y----DYGVQNQETMD---TLLFQP 109 (126)
Q Consensus 80 --------~~~~~~lNlaRv----Y----gyt~~~~~~k~---sll~~P 109 (126)
+|++++||+||+ | |||.++..+|+ +||++|
T Consensus 494 ~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 494 KPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 899999999999 5 99998778999 999998
No 4
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.32 E-value=8.7e-12 Score=97.46 Aligned_cols=75 Identities=25% Similarity=0.451 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhHHhcCcchhhHHHHhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh------------hH
Q 041958 14 DTFERFGRTCLRSLNSGELASKEELARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL------------PY 81 (126)
Q Consensus 14 p~i~~~~~~i~R~L~nDi~s~k~E~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln------------~~ 81 (126)
.++.+.++.+.+ |.||+.||++|+.+|+..|.|.|||+++| +|.++|++++.+++++.|++++ .+
T Consensus 193 ~~l~~~~~~~~~-l~NDl~S~~kE~~~g~~~N~v~vl~~~~~--~~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
T cd00868 193 PKLVRASSTIGR-LLNDIASYEKEIARGEVANSVECYMKEYG--VSEEEALEELRKMIEEAWKELNEEVLKLSSDVPRAV 269 (284)
T ss_pred HHHHHHHHHHHH-HhccchHHHHHHccCCcccHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 789999999999 99999999999999999999999999999 9999999999999999999987 45
Q ss_pred HHHHHHHHhh
Q 041958 82 LKLQLNFVES 91 (126)
Q Consensus 82 ~~~~lNlaRv 91 (126)
++.+.+++|.
T Consensus 270 ~~~l~~~~~g 279 (284)
T cd00868 270 LETLLNLARG 279 (284)
T ss_pred HHHHHHHHHh
Confidence 5556666665
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.18 E-value=3e-11 Score=93.78 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhHHhcCcchhhHHHHhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh
Q 041958 14 DTFERFGRTCLRSLNSGELASKEELARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL 79 (126)
Q Consensus 14 p~i~~~~~~i~R~L~nDi~s~k~E~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln 79 (126)
+.+.++++.+++ |.|||.||++|.++|+..|.|.|+|+++| +|.|+|+.++.+++++.++++|
T Consensus 208 ~~l~~~~~~~~~-l~NDl~S~~KE~~~g~~~N~v~~l~~~~~--~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 208 PMLRRLAADIIR-LVNDLYSYKKEIARGDVHNLVVVLMNEHG--LSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHTTSCCSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HhcccchhhcchhhcccccHHHHhhhhcC--CCHHHHHHHHHHHHHHHHHhcC
Confidence 559999999999 99999999999999999999999999999 9999999999999999999987
No 6
>PLN02592 ent-copalyl diphosphate synthase
Probab=99.17 E-value=6.7e-11 Score=107.64 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhHHhcCcchhhHHHHhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh-------------
Q 041958 13 IDTFERFGRTCLRSLNSGELASKEELARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL------------- 79 (126)
Q Consensus 13 ~p~i~~~~~~i~R~L~nDi~s~k~E~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln------------- 79 (126)
.|.+.++++++.| |+||++||++|+. +++..++ +|++++++.|+..+++|.
T Consensus 700 ~~~~~~l~~li~R-l~nDl~t~~~e~~--------------~~~~~~~-~a~~~~~~~ie~~~~eL~~lvl~~~~~~vp~ 763 (800)
T PLN02592 700 HPQYEQLAQLTNR-ICYQLGHYKKNKV--------------HINTYNP-EEKSKTTPSIESDMQELVQLVLQNSSDDIDP 763 (800)
T ss_pred chhHHHHHHHHHH-HHHhhhHHhhhcc--------------cCCcccH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 4889999999999 9999999999874 2222555 899999999999999996
Q ss_pred hHHHHHHHHHhh-c--CCCCCChhhhh---hhcccccc
Q 041958 80 PYLKLQLNFVES-Y--DYGVQNQETMD---TLLFQPIL 111 (126)
Q Consensus 80 ~~~~~~lNlaRv-Y--gyt~~~~~~k~---sll~~Pi~ 111 (126)
+|+++||+++|+ | ||+.| .+|+. .++++|+.
T Consensus 764 ~cK~~f~~~~k~fy~~~~~~~-~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 764 VIKQTFLMVAKSFYYAAYCDP-GTINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHhCCCCC
Confidence 999999999999 5 99987 67888 99999984
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=99.16 E-value=6.7e-11 Score=94.43 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhHHhcCcchhhHHHH-hcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh
Q 041958 14 DTFERFGRTCLRSLNSGELASKEEL-ARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL 79 (126)
Q Consensus 14 p~i~~~~~~i~R~L~nDi~s~k~E~-~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln 79 (126)
.++.++++.+++ |.|||.||++|+ ++|+..|.|.|+|+++| +|.|+|++++.+++.+.++++.
T Consensus 199 ~~l~~~~~~~~~-l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g--~s~~eA~~~~~~~~~~~~~~f~ 262 (303)
T cd00687 199 RALEALASDAIA-LVNDIYSYEKEIKANGEVHNLVKVLAEEHG--LSLEEAISVVRDMHNERITQFE 262 (303)
T ss_pred HHHHHHHHHHHH-HHHHHHhhHHHHHhCCccchHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 669999999999 999999999999 88998999999999999 9999999999999999999876
No 8
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=98.44 E-value=6.1e-07 Score=66.08 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhHHhcCcchhhHHHHhcC-CCchhhhhhhhcCCccC------------CHHHHHHHHHHHHHHHHHHHh
Q 041958 14 DTFERFGRTCLRSLNSGELASKEELARV-DASKSIDCYRHEINWHL------------EEEVARDHINDLVRQTWKKIL 79 (126)
Q Consensus 14 p~i~~~~~~i~R~L~nDi~s~k~E~~rG-~~assI~cYMkE~g~~v------------teEeA~~~i~~lIe~~WKeln 79 (126)
.++...++.+.+ |.||+.++..|.+++ ...|.+.+||+++| + +.++|.+++..++++.|++++
T Consensus 146 ~~~~~~~g~~~q-l~nDl~~~~~e~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 221 (243)
T cd00385 146 RKLGRALGLAFQ-LTNDLLDYEGDAERGEGKCTLPVLYALEYG--VPAEDLLLVEKSGSLEEALEELAKLAEEALKELN 221 (243)
T ss_pred HHHHHHHHHHHH-HHHHHHhccCCHHHhCCchHHHHHHHHHhC--ChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHh
Confidence 668888999999 999999999999985 56699999999999 7 789999999999999999987
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=88.54 E-value=0.38 Score=37.22 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhHHhcC-cchhhHHH-HhcCCCchhhhhhhhcC-CccCCHHHHHHHHHHH------HHHHHHHHh
Q 041958 14 DTFERFGRTCLRSLNS-GELASKEE-LARVDASKSIDCYRHEI-NWHLEEEVARDHINDL------VRQTWKKIL 79 (126)
Q Consensus 14 p~i~~~~~~i~R~L~n-Di~s~k~E-~~rG~~assI~cYMkE~-g~~vteEeA~~~i~~l------Ie~~WKeln 79 (126)
.+|.++...|-+ ..- .--.|-.= -.||..++-|.||+-++ + .|.|+|.++++++ =...|+-++
T Consensus 93 ~~i~~aVeFi~k-~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~--wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ 164 (183)
T KOG1719|consen 93 ENIQKAVEFIHK-NASLGKTVYVHCKAGRTRSATVVACYLMQHKN--WTPEAAVEHVRKIRPRVLLRPAQWDVLK 164 (183)
T ss_pred HHHHHHHHHHHh-ccccCCeEEEEecCCCccchhhhhhhhhhhcC--CCHHHHHHHHHhcCcceeecHHHHHHHH
Confidence 356666666666 110 00111110 12567788899999998 8 8999999999874 234576655
No 10
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=83.69 E-value=3.4 Score=35.33 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=33.5
Q ss_pred hcCcchhhHHHH-hcCCCchhhhhhhhcCCccCCHHHHHHHHHHH
Q 041958 27 LNSGELASKEEL-ARVDASKSIDCYRHEINWHLEEEVARDHINDL 70 (126)
Q Consensus 27 L~nDi~s~k~E~-~rG~~assI~cYMkE~g~~vteEeA~~~i~~l 70 (126)
..|||.||-.|- ..++-.|-|.-|.+.+| +|..+|.+++..-
T Consensus 223 ~~NDILSFYKEe~~~~E~~n~V~Nya~~~G--iS~~eAL~~lt~d 265 (357)
T cd00686 223 WVNDLMSFYKEFDDERDQISLVKNYVVSDE--ISLHEALEKLTQD 265 (357)
T ss_pred hhhhhhheehhhcccccccchHHHhhhhcC--CCHHHHHHHHHHH
Confidence 579999987776 44566788999999999 9999998865443
No 11
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=77.10 E-value=3.8 Score=32.30 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=35.7
Q ss_pred hcCcchhhHHHHhcCC-CchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh
Q 041958 27 LNSGELASKEELARVD-ASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL 79 (126)
Q Consensus 27 L~nDi~s~k~E~~rG~-~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln 79 (126)
|-.++...|+..++-+ +.-+=..-|+.|| .||+||.++++++--+-...|.
T Consensus 130 L~~el~~~k~~L~~rK~ierAKglLM~~~g--~sE~EAy~~lR~~AM~Rr~~i~ 181 (194)
T COG3707 130 LRRELAKLKDRLEERKVIERAKGLLMKRRG--LSEEEAYKLLRRTAMDRRCPIL 181 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhccCCHH
Confidence 5566667776544322 2233346899999 9999999999999877665544
No 12
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=71.80 E-value=3.1 Score=23.12 Aligned_cols=18 Identities=28% Similarity=0.387 Sum_probs=14.5
Q ss_pred hhhhcCCccCCHHHHHHHHH
Q 041958 49 CYRHEINWHLEEEVARDHIN 68 (126)
Q Consensus 49 cYMkE~g~~vteEeA~~~i~ 68 (126)
-|.++|| +|+||..+.+.
T Consensus 9 rYV~eh~--ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHG--LSEEEVAERLA 26 (28)
T ss_pred hhHHhcC--CCHHHHHHHHH
Confidence 5999999 99988766554
No 13
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=69.21 E-value=16 Score=31.56 Aligned_cols=45 Identities=9% Similarity=-0.028 Sum_probs=33.8
Q ss_pred hcCcchhhHHHHh-cCCCchhhhhhhhcCCccCCHHHHHHHHH-HHHHH
Q 041958 27 LNSGELASKEELA-RVDASKSIDCYRHEINWHLEEEVARDHIN-DLVRQ 73 (126)
Q Consensus 27 L~nDi~s~k~E~~-rG~~assI~cYMkE~g~~vteEeA~~~i~-~lIe~ 73 (126)
+.|||-||-.|.- .|+..|.|.-|-.=+| +|..+|.+.+. +.++.
T Consensus 223 ~~NDILSFYKE~l~a~E~~NyI~n~A~~~g--~S~~eaL~~l~~eti~a 269 (376)
T PF06330_consen 223 YVNDILSFYKEELVAGETGNYIHNRARVHG--VSILEALRELTDETIEA 269 (376)
T ss_dssp HHHHHHHHHHHHTTSSSSSSHHHHHHHHHT----HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhcccccccchhhhhhhccC--CCHHHHHHHHHHHHHHH
Confidence 7899999988866 7888899977776679 99999988863 44443
No 14
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=64.34 E-value=9.6 Score=24.79 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=19.0
Q ss_pred CCccCCHHHHHHHHHHHHHHHHHH
Q 041958 54 INWHLEEEVARDHINDLVRQTWKK 77 (126)
Q Consensus 54 ~g~~vteEeA~~~i~~lIe~~WKe 77 (126)
|| .+.+||+..+.+.|..+|+.
T Consensus 4 HG--~~~~eA~~~l~~~l~~~~~~ 25 (83)
T PF01713_consen 4 HG--LTVEEALRALEEFLDEARQR 25 (83)
T ss_dssp TT--S-HHHHHHHHHHHHHHHHHT
T ss_pred CC--CcHHHHHHHHHHHHHHHHHc
Confidence 57 89999999999999999865
No 15
>smart00463 SMR Small MutS-related domain.
Probab=63.83 E-value=11 Score=24.37 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=20.0
Q ss_pred CCccCCHHHHHHHHHHHHHHHHHH
Q 041958 54 INWHLEEEVARDHINDLVRQTWKK 77 (126)
Q Consensus 54 ~g~~vteEeA~~~i~~lIe~~WKe 77 (126)
|| .+.++|+..+...|.++|+.
T Consensus 7 HG--~~~~eA~~~l~~~l~~~~~~ 28 (80)
T smart00463 7 HG--LTVEEALTALDKFLNNARLK 28 (80)
T ss_pred CC--CCHHHHHHHHHHHHHHHHHc
Confidence 58 89999999999999998875
No 16
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=61.69 E-value=8.8 Score=31.24 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=33.8
Q ss_pred hhhcccchhHHHHHHHHHhHHhcCcchhhHHHHhcCCCchhhhhhhhcC-CccCCHHHHHHHHHHHH
Q 041958 6 LDDLELFIDTFERFGRTCLRSLNSGELASKEELARVDASKSIDCYRHEI-NWHLEEEVARDHINDLV 71 (126)
Q Consensus 6 ~~~~~~~~p~i~~~~~~i~R~L~nDi~s~k~E~~rG~~assI~cYMkE~-g~~vteEeA~~~i~~lI 71 (126)
-.|.++..++|+.++..+-. +-|..-.|=. .+|+.|+|.| + +|++| ++.|-+++
T Consensus 194 A~D~~L~~~kF~~Lae~lP~--------~aR~~hD~LY-rAID~YLk~Hp~--ls~~E-r~~lC~~l 248 (258)
T PF03000_consen 194 APDPNLKPSKFVALAEALPD--------SARPSHDGLY-RAIDIYLKAHPG--LSEEE-RKRLCRLL 248 (258)
T ss_pred cCCCCCCHHHHHHHHHHCCH--------hhhhccchHH-HHHHHHHHHccc--CCHHH-HHHHHhhC
Confidence 34666666777777665533 1222222333 8899999999 7 99988 44454443
No 17
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=58.02 E-value=14 Score=22.74 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=24.2
Q ss_pred CCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHH
Q 041958 42 DASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKI 78 (126)
Q Consensus 42 ~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKel 78 (126)
-+.-+...-|..+| +|+++|...++..-.+.-..+
T Consensus 14 ~I~~AkgiLm~~~g--~~e~~A~~~Lr~~Am~~~~~l 48 (56)
T PF03861_consen 14 VIEQAKGILMARYG--LSEDEAYRLLRRQAMRRRRSL 48 (56)
T ss_dssp HHHHHHHHHHHHHT----HHHHHHHHHHHHHHCTS-H
T ss_pred HHHHHHHHHHHHhC--cCHHHHHHHHHHHHHHcCCCH
Confidence 34456667899999 999999999988776554433
No 18
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.20 E-value=24 Score=30.97 Aligned_cols=57 Identities=23% Similarity=0.536 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHhh-----c-------------CCCCCChhhhh---------hh
Q 041958 57 HLEEEVARDHINDLVRQTWKKILPYLKL----QLNFVES-----Y-------------DYGVQNQETMD---------TL 105 (126)
Q Consensus 57 ~vteEeA~~~i~~lIe~~WKeln~~~~~----~lNlaRv-----Y-------------gyt~~~~~~k~---------sl 105 (126)
.+|.. . |++|++ .|+||..+++. -+|+-|. | +|..-. .++. ++
T Consensus 246 PIT~~-~---I~~M~~-lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~-~i~QEYLLYVRYtsi 319 (429)
T PF10100_consen 246 PITPT-L---IRDMVQ-LWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELP-AIHQEYLLYVRYTSI 319 (429)
T ss_pred CCCHH-H---HHHHHH-HHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCC-hHHhhHHHHHHhhhh
Confidence 37775 3 344443 79998744433 2677776 5 565532 3333 99
Q ss_pred cccccc--CCCccccc
Q 041958 106 LFQPIL--EDKGMVFT 119 (126)
Q Consensus 106 l~~Pi~--~~~~~~~~ 119 (126)
|+||+. -..|.||.
T Consensus 320 LIDPFS~PD~~GrYFD 335 (429)
T PF10100_consen 320 LIDPFSEPDEQGRYFD 335 (429)
T ss_pred eeCCCCCCCCCCCccc
Confidence 999984 66788764
No 19
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=48.27 E-value=27 Score=22.88 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=32.0
Q ss_pred hhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 041958 45 KSIDCYRHEINWHLEEEVARDHINDLVRQTWKKILPYLKLQLNFVE 90 (126)
Q Consensus 45 ssI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln~~~~~~lNlaR 90 (126)
..|...+-+.| ++.++|.+-|++....+|++=+++++...+-.+
T Consensus 7 E~v~~~L~~~G--~gR~~Ah~lv~~~a~~a~~~~~~l~e~l~~d~~ 50 (81)
T PF10397_consen 7 ERVMLALAEKG--LGRQEAHELVQEAAMEAWENGRDLREVLLADPE 50 (81)
T ss_dssp HHHHHHHHHTT--H-HHHHHHHHHHHHHHHHHTTS-HHHHHCTTHH
T ss_pred HHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHH
Confidence 45666677888 999999999999999999862266666654443
No 20
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=47.57 E-value=17 Score=29.44 Aligned_cols=28 Identities=18% Similarity=-0.037 Sum_probs=23.1
Q ss_pred CCCchhhhhhhhcCCccCCHHHHHHHHHHH
Q 041958 41 VDASKSIDCYRHEINWHLEEEVARDHINDL 70 (126)
Q Consensus 41 G~~assI~cYMkE~g~~vteEeA~~~i~~l 70 (126)
|-.+..+.|||-++| ++.++|++.|+..
T Consensus 182 GRTGtl~AayLI~~G--mspeeAI~~VR~~ 209 (241)
T PTZ00393 182 GRAPVLASIVLIEFG--MDPIDAIVFIRDR 209 (241)
T ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 445677789999999 9999999988764
No 21
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=45.70 E-value=22 Score=26.11 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=18.7
Q ss_pred hhhhhhhcCCccCCHHHHHHHHHH
Q 041958 46 SIDCYRHEINWHLEEEVARDHIND 69 (126)
Q Consensus 46 sI~cYMkE~g~~vteEeA~~~i~~ 69 (126)
=|..-|.|-| ||+|+|++.+.+
T Consensus 87 DIkLV~eQa~--VsreeA~kAL~e 108 (122)
T COG1308 87 DIKLVMEQAG--VSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHH
Confidence 4778999999 999999987764
No 22
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=44.66 E-value=60 Score=19.93 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=22.3
Q ss_pred CchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHH
Q 041958 43 ASKSIDCYRHEINWHLEEEVARDHINDLVRQTWK 76 (126)
Q Consensus 43 ~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WK 76 (126)
+...++....+++ ++.++|.+.+...+..-++
T Consensus 32 ~~ei~~~l~~~y~--~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 32 VEEIVDALAEEYD--VDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHH
Confidence 3345555666779 9999999999999887664
No 23
>PF13427 DUF4111: Domain of unknown function (DUF4111)
Probab=42.42 E-value=61 Score=22.56 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhh-c
Q 041958 58 LEEEVARDHINDLVRQTWKKIL-PYLKLQLNFVES-Y 92 (126)
Q Consensus 58 vteEeA~~~i~~lIe~~WKeln-~~~~~~lNlaRv-Y 92 (126)
|+.++=++.|..-+.+.+.++. .=...++|+||+ |
T Consensus 8 Vp~~~~~~ai~~~l~~~~~~~~~~~~~~vL~LcR~~~ 44 (106)
T PF13427_consen 8 VPREDYRDAIRDDLPEWEADIEGDPRYVVLNLCRILY 44 (106)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 6778888888888887777765 334578999999 5
No 24
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.81 E-value=62 Score=28.16 Aligned_cols=60 Identities=18% Similarity=0.390 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHhh-----c-------------CCCCCChhhhh--------hhc
Q 041958 57 HLEEEVARDHINDLVRQTWKKILPYLKLQ----LNFVES-----Y-------------DYGVQNQETMD--------TLL 106 (126)
Q Consensus 57 ~vteEeA~~~i~~lIe~~WKeln~~~~~~----lNlaRv-----Y-------------gyt~~~~~~k~--------sll 106 (126)
.+|.- ++..++. -|||+..+++++ +|+-|. | +|..-....++ +||
T Consensus 248 PIt~~-lIr~mr~----lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfVRYtalL 322 (431)
T COG4408 248 PITPA-LIRDMRG----LWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFVRYTALL 322 (431)
T ss_pred CCCHH-HHHHHHH----HHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHHHHHHHh
Confidence 36663 5555544 588877555543 677776 5 55543333344 899
Q ss_pred ccccc--CCCccccccc
Q 041958 107 FQPIL--EDKGMVFTSS 121 (126)
Q Consensus 107 ~~Pi~--~~~~~~~~~~ 121 (126)
+||+. -+.||+|.-+
T Consensus 323 vDPfS~pDEqG~yfDFS 339 (431)
T COG4408 323 VDPFSTPDEQGRYFDFS 339 (431)
T ss_pred cCCCCCccccCcccccc
Confidence 99994 6778887544
No 25
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.17 E-value=40 Score=23.50 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=23.8
Q ss_pred chhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh
Q 041958 44 SKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL 79 (126)
Q Consensus 44 assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln 79 (126)
.+.|.-+++++|..+|+++ +..+||.+.++||
T Consensus 74 ~~~v~~~L~~~gi~~t~~~----i~~~IEaAV~~m~ 105 (108)
T PF09682_consen 74 VQYVKERLKKKGIKVTDEQ----IEGAIEAAVKEMN 105 (108)
T ss_pred HHHHHHHHHHcCCCCCHHH----HHHHHHHHHHHHh
Confidence 3566677888875567665 7789999988876
No 26
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=36.21 E-value=46 Score=22.94 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 041958 59 EEEVARDHINDLVRQTWKKI 78 (126)
Q Consensus 59 teEeA~~~i~~lIe~~WKel 78 (126)
.-+||.+++++.|+++.+|+
T Consensus 65 DcpeA~~eL~~eI~eAK~dL 84 (91)
T PF08285_consen 65 DCPEAAKELQKEIKEAKADL 84 (91)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999886
No 27
>smart00400 ZnF_CHCC zinc finger.
Probab=34.89 E-value=47 Score=20.10 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=17.5
Q ss_pred hhhhhhhhcCCccCCHHHHHHHH
Q 041958 45 KSIDCYRHEINWHLEEEVARDHI 67 (126)
Q Consensus 45 ssI~cYMkE~g~~vteEeA~~~i 67 (126)
+.|+.||+-+| ++--||.+.|
T Consensus 34 d~i~fv~~~~~--~sf~eA~~~L 54 (55)
T smart00400 34 NVISFLMKYDK--LSFVEAVKKL 54 (55)
T ss_pred CHHHHHHHHHC--cCHHHHHHHh
Confidence 56999998889 8988998765
No 28
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=33.17 E-value=44 Score=23.15 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=17.8
Q ss_pred Cchhhhhh-hhcCCccCCHHHHHHHHHH
Q 041958 43 ASKSIDCY-RHEINWHLEEEVARDHIND 69 (126)
Q Consensus 43 ~assI~cY-MkE~g~~vteEeA~~~i~~ 69 (126)
.+..+-|| |..+| .+.++|.+.++.
T Consensus 92 S~~v~~~yl~~~~~--~~~~~A~~~v~~ 117 (138)
T smart00195 92 SATLIIAYLMKYRN--LSLNDAYDFVKD 117 (138)
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 33456677 44568 899999998864
No 29
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=33.11 E-value=52 Score=28.08 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.2
Q ss_pred hhhhcC---CccCCHHHHHHHHHHHHHHHHH
Q 041958 49 CYRHEI---NWHLEEEVARDHINDLVRQTWK 76 (126)
Q Consensus 49 cYMkE~---g~~vteEeA~~~i~~lIe~~WK 76 (126)
-|+++. + .|+|||.++++++|+++-+
T Consensus 317 ~~l~~r~~l~--~se~eA~~~f~~~i~~s~~ 345 (362)
T cd05173 317 QYLKDSLALG--KSEEEALKQFRQKFDEALR 345 (362)
T ss_pred HHHHHhcCCC--CCHHHHHHHHHHHHHHHHH
Confidence 488886 6 8999999999999998764
No 30
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=32.81 E-value=52 Score=20.45 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=14.2
Q ss_pred hhhhhhhcC-CccCCHHHHHHHHHHH
Q 041958 46 SIDCYRHEI-NWHLEEEVARDHINDL 70 (126)
Q Consensus 46 sI~cYMkE~-g~~vteEeA~~~i~~l 70 (126)
+++-|+++. | +|.++ ++.++..
T Consensus 44 s~e~Yl~~~lg--l~~~~-i~~Lr~~ 66 (68)
T PF13348_consen 44 SVENYLREELG--LSEED-IERLRER 66 (68)
T ss_dssp SHHHHHHHT-T----HHH-HHHHHHH
T ss_pred CHHHHHHHcCC--CCHHH-HHHHHHH
Confidence 358899888 9 99875 6666654
No 31
>PHA01748 hypothetical protein
Probab=32.43 E-value=1e+02 Score=19.43 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=23.1
Q ss_pred hhhhhhhhcCCccCCHHHH-HHHHHHHHHHHHHH
Q 041958 45 KSIDCYRHEINWHLEEEVA-RDHINDLVRQTWKK 77 (126)
Q Consensus 45 ssI~cYMkE~g~~vteEeA-~~~i~~lIe~~WKe 77 (126)
.-++-|.+++| ++..++ ++.|+..+++.|.+
T Consensus 15 ~eld~~a~~~g--~~RSE~Ir~Ai~~~~~~~~~~ 46 (60)
T PHA01748 15 ELLDRYAIKHG--LNRSEAIRKAIEKMVKDELKK 46 (60)
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHh
Confidence 45678899999 887555 45568888888875
No 32
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=32.02 E-value=52 Score=22.70 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCCCChhhhhhhccccccCCCcccccccC
Q 041958 84 LQLNFVESYDYGVQNQETMDTLLFQPILEDKGMVFTSST 122 (126)
Q Consensus 84 ~~lNlaRvYgyt~~~~~~k~sll~~Pi~~~~~~~~~~~~ 122 (126)
..|.+-|.|||+.. -.+.+..+.-++..+++|+.+-+|
T Consensus 49 TtW~vLR~FgY~d~-L~L~d~~l~p~l~v~~~~svELS~ 86 (89)
T PF08356_consen 49 TTWTVLRKFGYDDD-LSLSDDFLYPKLDVPPDQSVELSP 86 (89)
T ss_pred HHHHHHHHcCCCCc-ceeccccCCCCccCCCCCeeecCc
Confidence 66777776688774 356667776668888888877665
No 33
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=31.70 E-value=48 Score=22.66 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=19.3
Q ss_pred chhhhhhhhcC-CccCCHHHHHHHHHHH
Q 041958 44 SKSIDCYRHEI-NWHLEEEVARDHINDL 70 (126)
Q Consensus 44 assI~cYMkE~-g~~vteEeA~~~i~~l 70 (126)
+..+-+|+-.. | .|.++|++.++..
T Consensus 88 ~~v~~ayLm~~~~--~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 88 GAVAAAYLMKKNG--MSLEEAIEYVRSR 113 (133)
T ss_dssp HHHHHHHHHHHHT--SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 55667888775 8 8999999888653
No 34
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=31.63 E-value=87 Score=26.73 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.2
Q ss_pred hhhhcC---CccCCHHHHHHHHHHHHHHH
Q 041958 49 CYRHEI---NWHLEEEVARDHINDLVRQT 74 (126)
Q Consensus 49 cYMkE~---g~~vteEeA~~~i~~lIe~~ 74 (126)
-|+++. + .|+|||..++.++|+++
T Consensus 311 ~~l~~rf~l~--~se~eA~~~f~~lI~~s 337 (354)
T cd00895 311 KYVYDALRPQ--DTEADATTYFTRLIESS 337 (354)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHHHH
Confidence 478875 6 89999999999999987
No 35
>PF02372 IL15: Interleukin 15; InterPro: IPR003443 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-15 (IL-15) has a variety of biological functions, including stimulation and maintenance of cellular immune responses []. It is required for division of CD8+ T cells of memory phenotype, a process that is increased by inhibition of IL-2 []. The numbers of CD8+ memory T cells in animals may, therefore, be controlled by a balance between IL-15 and -2. ; GO: 0005126 cytokine receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 2PSM_A 3TGX_N 2OQP_A 2Z3R_O 2Z3Q_C 2XQB_A.
Probab=30.07 E-value=77 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=21.2
Q ss_pred CchhhhhhhhcCCccCCHHH--HHHHHHHHHHHHHHHHh
Q 041958 43 ASKSIDCYRHEINWHLEEEV--ARDHINDLVRQTWKKIL 79 (126)
Q Consensus 43 ~assI~cYMkE~g~~vteEe--A~~~i~~lIe~~WKeln 79 (126)
.-+++.||++|-.. +..|. .-..+.+.+...++.+|
T Consensus 55 ~~sal~CF~~El~v-vl~E~~~~~~~~~~~i~~~i~~~~ 92 (135)
T PF02372_consen 55 KVSALKCFQKELKV-VLKESNIDNSEINETIENLIKQIN 92 (135)
T ss_dssp HHHHHHHHHHHHHH-HHHHCSTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHhccchHHHHHHHHHHHHHh
Confidence 34889999998740 33332 23445566666666554
No 36
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=29.50 E-value=50 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=20.7
Q ss_pred hhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh
Q 041958 48 DCYRHEINWHLEEEVARDHINDLVRQTWKKIL 79 (126)
Q Consensus 48 ~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln 79 (126)
+.||.++| .|+|| .+-+.+..|..|.
T Consensus 37 eAy~~~~g--LTeEe----~~AV~~rD~~~Li 62 (106)
T cd07921 37 EAYCDKFG--LTEEQ----KQAVLDRDWLRLL 62 (106)
T ss_pred HHHHHHcC--CCHHH----HHHHHhCCHHHHH
Confidence 68999999 99987 3456677888876
No 37
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=29.46 E-value=93 Score=26.54 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.4
Q ss_pred hhhhcC---CccCCHHHHHHHHHHHHHHH
Q 041958 49 CYRHEI---NWHLEEEVARDHINDLVRQT 74 (126)
Q Consensus 49 cYMkE~---g~~vteEeA~~~i~~lIe~~ 74 (126)
-|+++. + .|+|||..+++++|+++
T Consensus 310 ~~l~~r~~l~--~sd~ea~~~f~~lI~~s 336 (353)
T cd05176 310 KYVYDALQPQ--TTDAEATIFFTRLIESS 336 (353)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHHHH
Confidence 388885 6 89999999999999987
No 38
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=29.15 E-value=81 Score=20.72 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhHHhcCcchhhHHHHhcCCCchhhhhhhhcCCccCCHHHHHHHHHH
Q 041958 14 DTFERFGRTCLRSLNSGELASKEELARVDASKSIDCYRHEINWHLEEEVARDHIND 69 (126)
Q Consensus 14 p~i~~~~~~i~R~L~nDi~s~k~E~~rG~~assI~cYMkE~g~~vteEeA~~~i~~ 69 (126)
|.+..+-...|.+...+....+.=+.|..+...|+-+.++.| .|.|+|++.+..
T Consensus 26 psI~~le~~yG~~WR~~~~~~~~y~rRK~Ii~~I~~l~~~~g--~~~~~ai~~le~ 79 (81)
T PF12550_consen 26 PSIRSLEKKYGSKWRRDSKERRTYSRRKVIIDFIERLANERG--ISEEEAIEILEE 79 (81)
T ss_pred CCHHHHHHHhChhhccCcccchhHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHh
Confidence 445444444443233243333333457778888988888889 999999987754
No 39
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=29.07 E-value=96 Score=21.00 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=26.7
Q ss_pred hhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHH
Q 041958 48 DCYRHEINWHLEEEVARDHINDLVRQTWKKIL-----PYLKLQLNFV 89 (126)
Q Consensus 48 ~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln-----~~~~~~lNla 89 (126)
++.|+++| +|+|| ..-+.+..|..|. |++...+-++
T Consensus 28 ea~~~~~g--Lt~eE----~~aL~~~D~~~L~~lGvhp~L~mh~~~~ 68 (81)
T cd07922 28 SAVFEEYG--LTPAE----RAALREGTFGALTSIGVHPILQMHYLMY 68 (81)
T ss_pred HHHHHHcC--CCHHH----HHHHHccCHHHHHHcCCCHHHHHHHHHH
Confidence 57889999 99986 4456677888876 7776666555
No 40
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=28.11 E-value=59 Score=23.56 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=21.2
Q ss_pred CCCchhhhhhhhcCCccCCHHHHHHHHHH
Q 041958 41 VDASKSIDCYRHEINWHLEEEVARDHIND 69 (126)
Q Consensus 41 G~~assI~cYMkE~g~~vteEeA~~~i~~ 69 (126)
|-...-|+.-|.+-| +|.++|++.+.+
T Consensus 74 ~i~~edI~lv~~q~g--vs~~~A~~AL~~ 100 (115)
T PRK06369 74 EIPEEDIELVAEQTG--VSEEEARKALEE 100 (115)
T ss_pred CCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 344567888898889 999999986653
No 41
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=28.10 E-value=61 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred hhhhcC---CccCCHHHHHHHHHHHHHHHH
Q 041958 49 CYRHEI---NWHLEEEVARDHINDLVRQTW 75 (126)
Q Consensus 49 cYMkE~---g~~vteEeA~~~i~~lIe~~W 75 (126)
-|+++. + .|+|||.+++.++|+++-
T Consensus 321 ~~l~~~~~l~--~se~eA~~~f~~~I~~s~ 348 (365)
T cd00894 321 EYIRDALTVG--KSEEDAKKHFLDQIEVCR 348 (365)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHHHHH
Confidence 488886 6 899999999999999874
No 42
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.08 E-value=43 Score=27.09 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=31.0
Q ss_pred hcCcchhhHHHHhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHH
Q 041958 27 LNSGELASKEELARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKKI 78 (126)
Q Consensus 27 L~nDi~s~k~E~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKel 78 (126)
..+|+.+|+.+... ... +.|.||++ ....+...+.++|+.||-+-
T Consensus 125 ~~~~~~~~~~~~~~---~~~-e~~lkE~~---~in~s~~~vde~Is~A~aTr 169 (231)
T KOG3208|consen 125 VRADISSYPSASGF---NRG-EMYLKEHD---HINNSIRLVDELISQAQATR 169 (231)
T ss_pred HhhhhccCCccCCC---chH-HHHHHHhc---cccchHHHHHHHHHHHHHHH
Confidence 34555555543222 222 78999996 55778899999999999775
No 43
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=28.01 E-value=49 Score=24.65 Aligned_cols=29 Identities=14% Similarity=-0.069 Sum_probs=21.6
Q ss_pred CCCchhhhhhhhcCCccCCHHHHHHHHHHH
Q 041958 41 VDASKSIDCYRHEINWHLEEEVARDHINDL 70 (126)
Q Consensus 41 G~~assI~cYMkE~g~~vteEeA~~~i~~l 70 (126)
|-.+..+-||+-++|+ ++.++|+..++..
T Consensus 110 gRSgt~~a~yL~~~~~-~s~~eAi~~vr~~ 138 (166)
T PTZ00242 110 GRAPILVALALVEYGG-MEPLDAVGFVREK 138 (166)
T ss_pred CHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 4445667899988742 8999999988754
No 44
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=27.95 E-value=60 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=19.9
Q ss_pred CchhhhhhhhcCCccCCHHHHHHHHHH
Q 041958 43 ASKSIDCYRHEINWHLEEEVARDHIND 69 (126)
Q Consensus 43 ~assI~cYMkE~g~~vteEeA~~~i~~ 69 (126)
...-|+.-|.+-| +|.++|++.+.+
T Consensus 78 ~~eDI~lV~eq~g--vs~e~A~~AL~~ 102 (116)
T TIGR00264 78 TEDDIELVMKQCN--VSKEEARRALEE 102 (116)
T ss_pred CHHHHHHHHHHhC--cCHHHHHHHHHH
Confidence 3466888888889 999999987653
No 45
>cd00737 endolysin_autolysin Endolysins and autolysins are found in viruses and bacteria, respectively. The ds DNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall hetropolymer peptidoglycan and cell division. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Probab=27.00 E-value=1.4e+02 Score=21.10 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 041958 58 LEEEVARDHINDLVRQTWKKIL 79 (126)
Q Consensus 58 vteEeA~~~i~~lIe~~WKeln 79 (126)
+|+++|.+-+..-++...+.++
T Consensus 43 iT~~qa~~ll~~dl~~~~~~v~ 64 (133)
T cd00737 43 ITEEQADALLAKDLAKAERAVN 64 (133)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988765
No 46
>PF10249 NDUFB10: NADH-ubiquinone oxidoreductase subunit 10; InterPro: IPR019377 NADH-ubiquinone oxidoreductase subunit 10 of (NDUFB10) is a member of a family of conserved proteins of up to 180 residues. It is one of the 41 protein subunits within the hydrophobic fraction of the NADH:ubiquinone oxidoreductase (complex I), a multiprotein complex located in the inner mitochondrial membrane whose main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. NDUFB10 is encoded in the nucleus.
Probab=26.79 E-value=33 Score=25.30 Aligned_cols=14 Identities=0% Similarity=-0.166 Sum_probs=11.9
Q ss_pred CCCchhhhhhhhcC
Q 041958 41 VDASKSIDCYRHEI 54 (126)
Q Consensus 41 G~~assI~cYMkE~ 54 (126)
|..+|+..|||||.
T Consensus 107 g~~~~~~~~~mKQK 120 (128)
T PF10249_consen 107 GAYGSARKALMKQK 120 (128)
T ss_pred CccccHHHHHHHHH
Confidence 66679999999986
No 47
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=26.75 E-value=52 Score=28.22 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.1
Q ss_pred hhhhhhhcC---CccCCHHHHHHHHHHHHHHH
Q 041958 46 SIDCYRHEI---NWHLEEEVARDHINDLVRQT 74 (126)
Q Consensus 46 sI~cYMkE~---g~~vteEeA~~~i~~lIe~~ 74 (126)
.++ |+++. + .|+|||.+++.++|+++
T Consensus 320 ~i~-~lr~rf~l~--~sd~eA~~~f~~~I~~s 348 (366)
T cd05175 320 DIA-YIRKTLALD--KTEQEALEYFMKQMNDA 348 (366)
T ss_pred HHH-HHHHhcCCC--CCHHHHHHHHHHHHHHH
Confidence 354 99987 6 89999999999999877
No 48
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=26.22 E-value=69 Score=27.37 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.3
Q ss_pred hhhhcC---CccCCHHHHHHHHHHHHHHHHH
Q 041958 49 CYRHEI---NWHLEEEVARDHINDLVRQTWK 76 (126)
Q Consensus 49 cYMkE~---g~~vteEeA~~~i~~lIe~~WK 76 (126)
-|+++. + .|+|||.++++++|+++-.
T Consensus 322 ~~lr~rf~l~--~se~eA~~~f~~~I~~s~~ 350 (366)
T cd05165 322 EYLRDTLALG--KSEEEALKYFLDKFNEALD 350 (366)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHHHHHh
Confidence 488885 6 8999999999999998754
No 49
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=25.58 E-value=83 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=21.1
Q ss_pred hhhhhhhcC---CccCCHHHHHHHHHHHHHHHH
Q 041958 46 SIDCYRHEI---NWHLEEEVARDHINDLVRQTW 75 (126)
Q Consensus 46 sI~cYMkE~---g~~vteEeA~~~i~~lIe~~W 75 (126)
.| -|+++. + .|+|||.++++.+|+++-
T Consensus 315 ~i-~~l~~~~~l~--~se~ea~~~f~~~i~~s~ 344 (361)
T cd05174 315 DI-QYLKDSLALG--KTEEEALKHFRVKFNEAL 344 (361)
T ss_pred HH-HHHHHHhCCC--CCHHHHHHHHHHHHHHHH
Confidence 35 588886 6 899999999888876553
No 50
>PF15581 Imm35: Immunity protein 35
Probab=25.10 E-value=1.1e+02 Score=21.32 Aligned_cols=39 Identities=13% Similarity=0.287 Sum_probs=25.4
Q ss_pred hhhhcCCccCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Q 041958 49 CYRHEINWHLEEEVARDHINDLVRQTWKKIL-PYLKLQLNFV 89 (126)
Q Consensus 49 cYMkE~g~~vteEeA~~~i~~lIe~~WKeln-~~~~~~lNla 89 (126)
.|..|.- -|.-.-++-+..+||..||-|. +=....+|.+
T Consensus 19 sY~~q~~--esa~~~i~~l~~lIe~eWRGl~~~qV~~kl~av 58 (93)
T PF15581_consen 19 SYLRQGE--ESARRTIRNLESLIEHEWRGLPEEQVLYKLEAV 58 (93)
T ss_pred HHHhcch--hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5777653 3555556677889999999987 3333334444
No 51
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=24.32 E-value=77 Score=26.97 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=22.2
Q ss_pred hhhhcC---CccCCHHHHHHHHHHHHHHHHH
Q 041958 49 CYRHEI---NWHLEEEVARDHINDLVRQTWK 76 (126)
Q Consensus 49 cYMkE~---g~~vteEeA~~~i~~lIe~~WK 76 (126)
-|+++. + .|+|||..++.++|+++-.
T Consensus 311 ~~l~~~~~l~--~sd~eA~~~f~~lI~~s~~ 339 (354)
T cd05177 311 KYVYNNLRPQ--DTDLEATSYFTKKIKESLE 339 (354)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHHHHHh
Confidence 488875 6 8999999999999998854
No 52
>COG2937 PlsB Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]
Probab=24.00 E-value=1.4e+02 Score=28.25 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=29.3
Q ss_pred hhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh
Q 041958 45 KSIDCYRHEINWHLEEEVARDHINDLVRQTWKKIL 79 (126)
Q Consensus 45 ssI~cYMkE~g~~vteEeA~~~i~~lIe~~WKeln 79 (126)
.+|.-+-|.-| +|.|+|.+...++..+.|.+.+
T Consensus 227 ~aia~eak~~~--is~EkA~k~a~~~a~eiaa~fS 259 (810)
T COG2937 227 KAIADEARSKG--ISVEKAQKMADELATEIAADFS 259 (810)
T ss_pred HHHhhHhhccC--CCHHHHHHHHHHHHHHHHHhcc
Confidence 35677888889 9999999999999999999987
No 53
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=23.66 E-value=56 Score=31.45 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.8
Q ss_pred cCCCchhhhhhhhcCCccCCHHHHHHHHHHHH
Q 041958 40 RVDASKSIDCYRHEINWHLEEEVARDHINDLV 71 (126)
Q Consensus 40 rG~~assI~cYMkE~g~~vteEeA~~~i~~lI 71 (126)
-.++.|+|+-|-|++| +|+|+|..++...-
T Consensus 587 ~s~m~sav~~~ak~~~--iS~~qa~~~l~~~s 616 (942)
T PRK13735 587 ASRMRSAVESYAKAHN--ISNEQATQELASRS 616 (942)
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHHHHh
Confidence 3467789999999999 99999998877543
No 54
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=23.17 E-value=84 Score=26.64 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=22.6
Q ss_pred hhhhhhhcC-CccCCHHHHHHHHHHHHHHHH
Q 041958 46 SIDCYRHEI-NWHLEEEVARDHINDLVRQTW 75 (126)
Q Consensus 46 sI~cYMkE~-g~~vteEeA~~~i~~lIe~~W 75 (126)
.| -|+++. .-..|+|||.+++.++|+++-
T Consensus 308 ~i-~~l~~r~~l~~s~~ea~~~~~~~I~~s~ 337 (353)
T cd05166 308 DL-KYVRDALRPQLTDAEATIQFTKMIQSSL 337 (353)
T ss_pred HH-HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 44 488886 212899999999999999874
No 55
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=22.82 E-value=86 Score=26.50 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=24.2
Q ss_pred hhhhhhhhcC-CccCCHHHHHHHHHHHHHHHHH
Q 041958 45 KSIDCYRHEI-NWHLEEEVARDHINDLVRQTWK 76 (126)
Q Consensus 45 ssI~cYMkE~-g~~vteEeA~~~i~~lIe~~WK 76 (126)
..|. |+++. ....|+++|..++.++|+++-.
T Consensus 306 ~~i~-~l~~r~~l~~s~~~a~~~~~~lI~~s~~ 337 (352)
T cd00891 306 EDIE-YLRDALALDKSDEEATEYFRKLIHESLN 337 (352)
T ss_pred HHHH-HHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 3454 88886 2228999999999999998854
No 56
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=22.24 E-value=45 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.3
Q ss_pred cchhhHHHHhcCCCchhhhhhhhcCC
Q 041958 30 GELASKEELARVDASKSIDCYRHEIN 55 (126)
Q Consensus 30 Di~s~k~E~~rG~~assI~cYMkE~g 55 (126)
|-++|.-|++.++-.-++.-||||+.
T Consensus 326 ~NatFlSEretaDRNyAlsYymkE~k 351 (622)
T KOG0506|consen 326 DNATFLSERETADRNYALSYYMKEKK 351 (622)
T ss_pred cchhhhcchhcccchhHHHHHHHhcc
Confidence 66789999999999899999999995
No 57
>PF12469 DUF3692: CRISPR-associated protein ; InterPro: IPR024615 This uncharacterised N-terminal domain family is typically between 101 and 138 amino acids in length. ; PDB: 3UNG_C 4DOZ_A 3UR3_C.
Probab=22.23 E-value=1.2e+02 Score=21.22 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 041958 59 EEEVARDHINDLVRQTWKKI 78 (126)
Q Consensus 59 teEeA~~~i~~lIe~~WKel 78 (126)
..++..+++++.+.+.|+++
T Consensus 94 ~~~~~~~~~k~~~~~~w~~i 113 (117)
T PF12469_consen 94 EAEELAEEAKEAIREAWKEI 113 (117)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999986
No 58
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=22.10 E-value=82 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=21.6
Q ss_pred CCCchhhhhhhh-cCCccCCHHHHHHHHHHH
Q 041958 41 VDASKSIDCYRH-EINWHLEEEVARDHINDL 70 (126)
Q Consensus 41 G~~assI~cYMk-E~g~~vteEeA~~~i~~l 70 (126)
|-...-|.|||- ++| .|.+||+..|+.+
T Consensus 159 GRTG~liAc~lmy~~g--~ta~eaI~~lR~~ 187 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYG--MTAGEAIAWLRIC 187 (225)
T ss_pred CchhHHHHHHHHHHhC--CCHHHHHHHHHhc
Confidence 445577889975 569 9999999888754
No 59
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=21.44 E-value=2e+02 Score=24.27 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=22.0
Q ss_pred hhhhcC-CccCCHHHHHHHHHHHHHHHHH
Q 041958 49 CYRHEI-NWHLEEEVARDHINDLVRQTWK 76 (126)
Q Consensus 49 cYMkE~-g~~vteEeA~~~i~~lIe~~WK 76 (126)
-|+++. ....|++||.+++.++|+++-.
T Consensus 305 ~~l~~rf~l~~s~~ea~~~~~~lI~~s~~ 333 (350)
T cd00896 305 LKVQEKFRLDLSDEEAIKHFQNLINDSVN 333 (350)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 377775 2228999999999999998853
No 60
>KOG0186 consensus Proline oxidase [Amino acid transport and metabolism]
Probab=21.33 E-value=78 Score=28.39 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=37.7
Q ss_pred hhcccc--hhHHHHHHHHHhHHhcCcchhhHHHHhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHH
Q 041958 7 DDLELF--IDTFERFGRTCLRSLNSGELASKEELARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWK 76 (126)
Q Consensus 7 ~~~~~~--~p~i~~~~~~i~R~L~nDi~s~k~E~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WK 76 (126)
-|-|++ -|.|-..+....| =.|- .+++.-+-|+++||+|+-| |---.+++.--++.|.
T Consensus 288 vDAE~T~lqpai~~lt~~l~~-kfN~------~k~~p~v~NTyQaYLKda~-----e~l~~d~k~A~reG~~ 347 (506)
T KOG0186|consen 288 VDAEQTYLQPAISYLTYELAR-KFNS------DKERPIVFNTYQAYLKDAG-----ERLHLDLKLARREGWP 347 (506)
T ss_pred echhhhhhhhHHHHHHHHHHH-HhCC------CCCCceEeeeHHHHHhhHH-----HHHHHHHHHHHHcCCc
Confidence 344444 3667777777777 4442 2677888899999999765 3334455566666774
No 61
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.90 E-value=1.3e+02 Score=23.51 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=27.5
Q ss_pred HhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHH
Q 041958 38 LARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKK 77 (126)
Q Consensus 38 ~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKe 77 (126)
..+|.. .++.-+-=|| .|.|||+..+-..|..+.++
T Consensus 88 LrrG~~--~~e~~LDLHG--~tq~eAr~~L~~Fi~~a~~~ 123 (184)
T COG2840 88 LRRGRY--PPEARLDLHG--LTQEEARQELGAFIARARAE 123 (184)
T ss_pred HhcCCC--CcceeeeccC--CCHHHHHHHHHHHHHHHHHh
Confidence 346775 3455555579 99999999999999988865
No 62
>PF08769 Spo0A_C: Sporulation initiation factor Spo0A C terminal; InterPro: IPR014879 The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005509 calcium ion binding, 0006355 regulation of transcription, DNA-dependent, 0042173 regulation of sporulation resulting in formation of a cellular spore, 0005737 cytoplasm; PDB: 1FC3_C 1LQ1_D.
Probab=20.71 E-value=1.5e+02 Score=20.81 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=19.2
Q ss_pred hcCCccCCHHHHHHHHHHHHHHHHHH
Q 041958 52 HEINWHLEEEVARDHINDLVRQTWKK 77 (126)
Q Consensus 52 kE~g~~vteEeA~~~i~~lIe~~WKe 77 (126)
+.|| +|....-+.|+..|+.+|..
T Consensus 48 ~k~~--TT~s~VERaIR~aI~~~w~~ 71 (106)
T PF08769_consen 48 KKYG--TTPSRVERAIRHAIEVAWTR 71 (106)
T ss_dssp HHTT--S-HHHHHHHHHHHHHHHHHC
T ss_pred HHHC--CCHHHHHHHHHHHHHHHHHc
Confidence 3678 88877788899999999984
No 63
>PRK04946 hypothetical protein; Provisional
Probab=20.49 E-value=1.3e+02 Score=23.18 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=25.0
Q ss_pred HhcCCCchhhhhhhhcCCccCCHHHHHHHHHHHHHHHHHH
Q 041958 38 LARVDASKSIDCYRHEINWHLEEEVARDHINDLVRQTWKK 77 (126)
Q Consensus 38 ~~rG~~assI~cYMkE~g~~vteEeA~~~i~~lIe~~WKe 77 (126)
..+|+.+ ++.-+.=|| .|.|||+..+...|.++.+.
T Consensus 87 Lr~G~~~--~~~~LDLhG--~~~eeA~~~L~~fl~~a~~~ 122 (181)
T PRK04946 87 LRRGDYS--PELFLDLHG--LTQLQAKQELGALIAACRKE 122 (181)
T ss_pred hhCCCCC--CceEEECCC--CCHHHHHHHHHHHHHHHHHc
Confidence 3456642 222222368 89999999999999998863
No 64
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=20.37 E-value=1.8e+02 Score=19.06 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=21.6
Q ss_pred CchhhhhhhhcCCccCCHHHHHHHHHHHHHHH
Q 041958 43 ASKSIDCYRHEINWHLEEEVARDHINDLVRQT 74 (126)
Q Consensus 43 ~assI~cYMkE~g~~vteEeA~~~i~~lIe~~ 74 (126)
+...++-.+.+|+ + .+.|...+...++.-
T Consensus 46 v~eI~~~L~~~Y~--~-~e~~~~dV~~fL~~L 74 (81)
T TIGR03859 46 LAEIIQELAQRFP--A-AEEIEDDVIAFLAVA 74 (81)
T ss_pred HHHHHHHHHHHcC--C-hhhHHHHHHHHHHHH
Confidence 3344556788899 8 888888888888754
Done!