Query 041959
Match_columns 172
No_of_seqs 109 out of 1325
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1577 Aldo/keto reductase fa 100.0 1.4E-42 3E-47 274.9 15.5 165 1-172 1-248 (300)
2 COG0656 ARA1 Aldo/keto reducta 100.0 3E-42 6.4E-47 272.5 14.4 160 4-171 2-226 (280)
3 COG0667 Tas Predicted oxidored 100.0 1.5E-35 3.3E-40 240.5 14.5 166 5-172 1-270 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 6.6E-35 1.4E-39 234.9 13.1 167 4-172 11-286 (336)
5 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.6E-34 1.9E-38 226.4 14.6 157 7-171 6-224 (275)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 7.3E-34 1.6E-38 233.4 14.5 166 4-171 12-292 (346)
7 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.9E-33 8.4E-38 221.8 15.2 148 16-172 2-215 (267)
8 TIGR01293 Kv_beta voltage-depe 100.0 3.3E-33 7.2E-38 227.0 14.7 164 7-172 1-277 (317)
9 PLN02587 L-galactose dehydroge 100.0 8.7E-33 1.9E-37 224.3 14.7 164 7-172 1-257 (314)
10 PRK10625 tas putative aldo-ket 100.0 1.2E-32 2.7E-37 226.1 14.7 166 5-172 1-300 (346)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 1.6E-31 3.4E-36 213.4 14.7 164 7-172 1-248 (285)
12 PRK10376 putative oxidoreducta 100.0 4.2E-31 9.2E-36 212.3 13.4 160 1-171 1-248 (290)
13 PRK14863 bifunctional regulato 100.0 5.6E-31 1.2E-35 211.8 11.7 156 14-171 2-242 (292)
14 COG4989 Predicted oxidoreducta 100.0 3.2E-31 6.9E-36 203.8 8.5 167 5-172 1-254 (298)
15 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.4E-29 7.4E-34 199.8 10.1 151 19-171 1-243 (283)
16 COG1453 Predicted oxidoreducta 99.9 9.2E-26 2E-30 181.8 12.5 161 5-171 1-242 (391)
17 KOG1576 Predicted oxidoreducta 99.9 2E-23 4.3E-28 162.2 8.7 166 3-170 20-280 (342)
18 CHL00200 trpA tryptophan synth 86.2 11 0.00024 30.1 9.7 112 20-132 18-154 (263)
19 COG1168 MalY Bifunctional PLP- 79.3 23 0.0005 29.8 9.2 31 29-63 39-69 (388)
20 PF11242 DUF2774: Protein of u 79.1 2.6 5.6E-05 25.9 2.7 22 148-169 15-36 (63)
21 COG0159 TrpA Tryptophan syntha 78.4 30 0.00065 27.7 9.3 112 21-133 21-158 (265)
22 KOG3023 Glutamate-cysteine lig 78.3 3.3 7.2E-05 32.8 3.8 38 92-129 174-227 (285)
23 PF00290 Trp_syntA: Tryptophan 77.5 16 0.00035 29.1 7.6 110 20-131 13-149 (259)
24 PF14871 GHL6: Hypothetical gl 71.0 5.2 0.00011 28.5 3.1 40 92-132 25-67 (132)
25 PRK13111 trpA tryptophan synth 69.8 54 0.0012 26.0 9.7 107 20-127 15-147 (258)
26 PLN02591 tryptophan synthase 68.5 57 0.0012 25.8 12.1 110 21-131 6-140 (250)
27 TIGR00262 trpA tryptophan synt 67.1 61 0.0013 25.6 12.2 112 20-132 13-151 (256)
28 PF07021 MetW: Methionine bios 64.3 41 0.0009 25.6 6.8 43 91-133 106-170 (193)
29 PRK07114 keto-hydroxyglutarate 58.5 78 0.0017 24.6 7.7 26 28-53 24-49 (222)
30 PF10668 Phage_terminase: Phag 57.8 11 0.00023 23.1 2.2 18 147-164 23-40 (60)
31 KOG0259 Tyrosine aminotransfer 55.3 53 0.0011 28.0 6.5 20 112-131 222-241 (447)
32 COG1748 LYS9 Saccharopine dehy 55.2 22 0.00049 30.1 4.5 37 30-66 78-114 (389)
33 PF13518 HTH_28: Helix-turn-he 54.5 15 0.00033 20.8 2.5 21 148-169 14-34 (52)
34 TIGR01182 eda Entner-Doudoroff 53.2 1E+02 0.0022 23.6 7.6 25 28-52 17-41 (204)
35 PLN02444 HMP-P synthase 52.2 1.6E+02 0.0035 26.4 9.1 28 105-137 356-384 (642)
36 PRK13352 thiamine biosynthesis 51.3 1.6E+02 0.0034 25.3 8.8 36 91-126 180-223 (431)
37 PRK09284 thiamine biosynthesis 51.2 1.8E+02 0.004 26.0 9.3 49 105-158 351-410 (607)
38 COG3623 SgaU Putative L-xylulo 48.5 41 0.00088 26.7 4.6 40 12-51 65-116 (287)
39 PF13443 HTH_26: Cro/C1-type H 48.2 3.2 7E-05 24.9 -1.2 45 114-163 13-57 (63)
40 PF01081 Aldolase: KDPG and KH 48.1 1.2E+02 0.0026 23.1 8.0 80 28-127 17-106 (196)
41 PF01118 Semialdhyde_dh: Semia 47.0 31 0.00066 23.6 3.5 28 28-55 74-101 (121)
42 KOG2499 Beta-N-acetylhexosamin 46.3 34 0.00073 29.9 4.1 16 112-127 253-268 (542)
43 COG1540 Uncharacterized protei 43.5 1.6E+02 0.0036 23.3 7.9 127 21-165 13-166 (252)
44 PF01476 LysM: LysM domain; I 43.3 28 0.0006 18.9 2.3 19 146-164 6-24 (44)
45 PRK09413 IS2 repressor TnpA; R 43.2 19 0.00041 25.0 1.9 41 29-69 14-55 (121)
46 PF01527 HTH_Tnp_1: Transposas 41.5 8.1 0.00018 24.0 -0.1 40 29-68 8-48 (76)
47 PF00388 PI-PLC-X: Phosphatidy 40.8 23 0.0005 25.2 2.1 18 34-51 29-46 (146)
48 TIGR00190 thiC thiamine biosyn 40.5 2.4E+02 0.0051 24.2 9.8 22 105-126 198-220 (423)
49 PF01402 RHH_1: Ribbon-helix-h 39.7 44 0.00096 17.7 2.8 20 147-166 12-31 (39)
50 COG0422 ThiC Thiamine biosynth 39.7 2.4E+02 0.0052 24.1 9.9 35 92-126 179-221 (432)
51 PF13613 HTH_Tnp_4: Helix-turn 37.4 64 0.0014 18.7 3.4 33 35-67 10-43 (53)
52 PRK05718 keto-hydroxyglutarate 36.9 1.1E+02 0.0023 23.6 5.4 24 28-51 24-47 (212)
53 PF06971 Put_DNA-bind_N: Putat 36.6 33 0.00072 20.1 2.0 14 150-163 32-45 (50)
54 KOG4175 Tryptophan synthase al 36.0 1.7E+02 0.0037 22.8 6.2 111 17-128 18-154 (268)
55 smart00148 PLCXc Phospholipase 35.7 36 0.00078 24.1 2.4 21 33-53 30-50 (135)
56 PF02817 E3_binding: e3 bindin 35.0 22 0.00048 19.6 1.0 21 143-163 3-23 (39)
57 PF04800 ETC_C1_NDUFA4: ETC co 34.6 48 0.001 22.5 2.8 23 111-133 58-80 (101)
58 PF10723 RepB-RCR_reg: Replica 33.3 52 0.0011 21.5 2.7 23 147-169 54-76 (84)
59 PF13653 GDPD_2: Glycerophosph 32.8 57 0.0012 16.9 2.3 18 34-51 10-27 (30)
60 PF01408 GFO_IDH_MocA: Oxidore 32.7 1.5E+02 0.0032 19.6 6.0 45 107-159 71-115 (120)
61 PF00046 Homeobox: Homeobox do 32.3 74 0.0016 18.3 3.1 25 143-167 24-48 (57)
62 TIGR02899 spore_safA spore coa 32.0 38 0.00082 18.0 1.7 18 147-164 5-22 (44)
63 COG3854 SpoIIIAA ncharacterize 32.0 73 0.0016 25.5 3.7 34 34-67 233-267 (308)
64 KOG4245 Predicted metal-depend 31.6 67 0.0014 24.9 3.4 36 19-54 67-103 (297)
65 COG0825 AccA Acetyl-CoA carbox 30.9 63 0.0014 26.4 3.3 37 31-67 137-180 (317)
66 PF02679 ComA: (2R)-phospho-3- 30.5 42 0.00091 26.6 2.2 29 19-47 42-70 (244)
67 PF07611 DUF1574: Protein of u 30.3 53 0.0012 27.4 2.9 48 112-159 255-306 (345)
68 cd00086 homeodomain Homeodomai 30.1 1E+02 0.0022 17.5 3.5 25 143-167 24-48 (59)
69 PF01702 TGT: Queuine tRNA-rib 29.7 54 0.0012 25.4 2.8 29 17-52 114-142 (238)
70 PF05221 AdoHcyase: S-adenosyl 29.5 58 0.0013 26.1 2.9 26 105-130 75-100 (268)
71 PF07836 DmpG_comm: DmpG-like 29.2 68 0.0015 20.0 2.5 20 147-166 23-42 (66)
72 COG0327 Uncharacterized conser 29.1 84 0.0018 24.8 3.8 37 30-67 196-232 (250)
73 KOG3206 Alpha-tubulin folding 29.0 26 0.00057 27.0 0.8 13 43-55 199-211 (234)
74 PF12244 DUF3606: Protein of u 28.9 73 0.0016 19.0 2.7 21 145-165 19-39 (57)
75 PF08727 P3A: Poliovirus 3A pr 28.2 40 0.00087 20.4 1.3 14 112-125 30-43 (57)
76 PRK06361 hypothetical protein; 28.1 87 0.0019 23.6 3.6 24 32-55 11-34 (212)
77 PF13467 RHH_4: Ribbon-helix-h 27.8 74 0.0016 19.9 2.6 20 147-166 24-43 (67)
78 cd07947 DRE_TIM_Re_CS Clostrid 27.5 67 0.0015 25.8 3.0 25 29-53 213-237 (279)
79 PF00682 HMGL-like: HMGL-like 27.4 59 0.0013 24.9 2.6 23 29-51 191-213 (237)
80 COG4226 HicB Predicted nucleas 27.3 1.7E+02 0.0037 20.2 4.4 47 112-166 52-102 (111)
81 COG3607 Predicted lactoylgluta 26.9 75 0.0016 22.6 2.7 28 28-55 80-107 (133)
82 COG3589 Uncharacterized conser 26.6 3E+02 0.0066 23.1 6.5 38 20-57 4-42 (360)
83 cd01821 Rhamnogalacturan_acety 25.8 1.9E+02 0.0041 21.1 5.1 49 112-160 97-149 (198)
84 COG2102 Predicted ATPases of P 25.7 1E+02 0.0022 24.1 3.5 83 75-161 76-177 (223)
85 TIGR01501 MthylAspMutase methy 25.7 1.7E+02 0.0038 20.8 4.5 80 18-124 2-82 (134)
86 COG1004 Ugd Predicted UDP-gluc 25.1 4.4E+02 0.0096 22.6 7.5 98 15-133 251-354 (414)
87 PF12668 DUF3791: Protein of u 24.9 95 0.0021 18.7 2.7 20 148-167 7-26 (62)
88 PF14502 HTH_41: Helix-turn-he 24.8 74 0.0016 18.6 2.0 25 147-171 7-33 (48)
89 cd07943 DRE_TIM_HOA 4-hydroxy- 24.5 74 0.0016 25.0 2.7 31 20-52 188-218 (263)
90 PF03435 Saccharop_dh: Sacchar 24.4 64 0.0014 26.8 2.4 21 32-52 79-99 (386)
91 PF11116 DUF2624: Protein of u 24.4 49 0.0011 21.8 1.3 16 111-126 17-32 (85)
92 KOG0013 Uncharacterized conser 23.8 49 0.0011 25.6 1.5 22 46-67 50-71 (231)
93 cd00952 CHBPH_aldolase Trans-o 23.7 4E+02 0.0086 21.6 8.0 105 28-153 26-160 (309)
94 COG0635 HemN Coproporphyrinoge 23.7 2.7E+02 0.0058 23.8 6.0 51 17-67 148-213 (416)
95 cd02742 GH20_hexosaminidase Be 23.6 75 0.0016 25.7 2.6 17 112-128 75-91 (303)
96 PF10078 DUF2316: Uncharacteri 23.5 82 0.0018 20.9 2.3 27 107-133 54-80 (89)
97 PF02796 HTH_7: Helix-turn-hel 23.4 86 0.0019 17.4 2.2 15 148-162 23-37 (45)
98 PRK02048 4-hydroxy-3-methylbut 23.4 5.7E+02 0.012 23.2 11.4 97 29-126 39-158 (611)
99 cd06568 GH20_SpHex_like A subg 23.1 76 0.0017 26.1 2.6 17 112-128 78-94 (329)
100 cd07940 DRE_TIM_IPMS 2-isoprop 22.8 84 0.0018 24.8 2.7 24 29-52 199-222 (268)
101 TIGR03249 KdgD 5-dehydro-4-deo 22.5 4E+02 0.0088 21.2 7.0 22 29-50 24-45 (296)
102 PF02638 DUF187: Glycosyl hydr 22.5 87 0.0019 25.5 2.8 21 112-132 73-93 (311)
103 smart00760 Bac_DnaA_C Bacteria 22.4 1.1E+02 0.0023 18.2 2.6 18 146-163 3-20 (60)
104 PF13404 HTH_AsnC-type: AsnC-t 22.4 1.3E+02 0.0028 16.6 2.7 20 148-167 19-38 (42)
105 PF05920 Homeobox_KN: Homeobox 22.2 1.5E+02 0.0033 16.2 3.1 26 142-167 9-34 (40)
106 COG1210 GalU UDP-glucose pyrop 22.2 91 0.002 25.3 2.7 31 17-47 9-52 (291)
107 TIGR03849 arch_ComA phosphosul 22.1 93 0.002 24.5 2.8 30 19-48 29-58 (237)
108 PLN02494 adenosylhomocysteinas 22.1 1.5E+02 0.0033 25.9 4.3 28 105-132 78-105 (477)
109 cd00401 AdoHcyase S-adenosyl-L 21.7 1E+02 0.0022 26.4 3.1 27 105-131 68-94 (413)
110 PRK08227 autoinducer 2 aldolas 21.7 2E+02 0.0043 23.1 4.6 35 113-155 131-165 (264)
111 PF13921 Myb_DNA-bind_6: Myb-l 21.7 1.2E+02 0.0025 17.7 2.6 22 148-169 19-41 (60)
112 PF13480 Acetyltransf_6: Acety 21.5 97 0.0021 20.8 2.6 20 33-52 116-135 (142)
113 KOG0483 Transcription factor H 21.4 1.1E+02 0.0025 23.3 3.1 25 144-168 75-99 (198)
114 PF13011 LZ_Tnp_IS481: leucine 21.3 74 0.0016 20.9 1.8 39 34-72 15-54 (85)
115 PF00728 Glyco_hydro_20: Glyco 21.2 88 0.0019 25.4 2.6 17 112-128 76-92 (351)
116 PF08671 SinI: Anti-repressor 21.2 1.2E+02 0.0026 15.8 2.2 16 31-46 3-18 (30)
117 PRK12330 oxaloacetate decarbox 21.2 82 0.0018 27.7 2.5 25 29-53 210-234 (499)
118 PF08765 Mor: Mor transcriptio 21.2 81 0.0018 21.3 2.0 16 148-163 74-89 (108)
119 PF03537 Glyco_hydro_114: Glyc 20.9 1.3E+02 0.0029 18.8 2.9 27 107-133 34-60 (74)
120 PF00356 LacI: Bacterial regul 20.8 1.5E+02 0.0032 16.8 2.8 18 149-166 2-19 (46)
121 TIGR01303 IMP_DH_rel_1 IMP deh 20.6 3.4E+02 0.0075 23.6 6.2 36 30-67 223-260 (475)
122 PRK01008 queuine tRNA-ribosylt 20.6 99 0.0021 26.1 2.8 31 17-54 256-286 (372)
123 cd07491 Peptidases_S8_7 Peptid 20.5 2.6E+02 0.0056 21.8 5.0 44 30-73 88-138 (247)
124 PF01784 NIF3: NIF3 (NGG1p int 20.4 58 0.0013 25.4 1.3 37 30-67 198-234 (241)
125 TIGR00936 ahcY adenosylhomocys 20.4 1.1E+02 0.0025 26.0 3.1 26 105-130 64-89 (406)
126 cd06564 GH20_DspB_LnbB-like Gl 20.4 81 0.0018 25.7 2.2 17 112-128 85-101 (326)
127 cd06565 GH20_GcnA-like Glycosy 20.3 94 0.002 25.1 2.6 17 112-128 63-79 (301)
128 PF13384 HTH_23: Homeodomain-l 20.3 21 0.00046 20.1 -0.9 36 36-72 10-46 (50)
129 KOG2499 Beta-N-acetylhexosamin 20.3 1.3E+02 0.0028 26.5 3.4 42 14-55 229-277 (542)
130 PRK13702 replication protein; 20.2 1.3E+02 0.0028 19.8 2.7 23 147-169 54-76 (85)
131 TIGR01755 flav_wrbA NAD(P)H:qu 20.0 2.2E+02 0.0047 21.3 4.4 55 112-167 126-197 (197)
No 1
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=274.94 Aligned_cols=165 Identities=36% Similarity=0.476 Sum_probs=145.7
Q ss_pred CCCCCCceecCCCCCcCCcccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHHHhhcC-Cch-----
Q 041959 1 MRTAIPEEPLGSTGKSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAEALRLA-SFN----- 74 (172)
Q Consensus 1 ~~~~m~~~~l~~tg~~~p~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~~~~~~-~~~----- 74 (172)
|+... .++|++ |.+||.||||||+ .+.+++.+.|+.|++.||||||||..|+||+.+|++|++...++ +.|
T Consensus 1 M~~~~-~~~Ln~-G~~mP~iGlGTw~-~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFi 77 (300)
T KOG1577|consen 1 MSSKT-TVKLNN-GFKMPIIGLGTWQ-SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFI 77 (300)
T ss_pred CCccc-eEeccC-CCccceeeeEecc-cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhhee
Confidence 33333 688988 9999999999999 78899999999999999999999999999999999999875332 222
Q ss_pred ---------------HHHhhhhccCCC-CCCCe----------------------------------------------e
Q 041959 75 ---------------PATSFSSPQNSG-SPTPI----------------------------------------------A 92 (172)
Q Consensus 75 ---------------~~~~~~sL~~l~-d~~~~----------------------------------------------i 92 (172)
.++++ ||++|+ ||+|+ |
T Consensus 78 TSKlw~~~~~~~~v~~al~~-sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsI 156 (300)
T KOG1577|consen 78 TSKLWPTDHAPELVEKALEK-SLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSI 156 (300)
T ss_pred eeccCccccChhhHHHHHHH-HHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEe
Confidence 79999 999998 77653 9
Q ss_pred EEcCCCHHHHhh---------------hCCccccHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhC
Q 041959 93 AVSSRAYKKLSK---------------TNPIWQQKKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQIAEANG 157 (172)
Q Consensus 93 GvSn~~~~~~~~---------------~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~ia~~~~ 157 (172)
|||||+..++++ +||+++|+++++||+++||.|+||||||.++. +. ..+.++.+.+||+||+
T Consensus 157 GVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~~ 233 (300)
T KOG1577|consen 157 GVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKYN 233 (300)
T ss_pred eeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHhC
Confidence 999999999999 99999999999999999999999999998443 12 6789999999999999
Q ss_pred CCHHHHHHHhcccCC
Q 041959 158 KTVAQLIHNSFFLST 172 (172)
Q Consensus 158 ~t~aqial~w~~~~~ 172 (172)
+|||||+|||.++.+
T Consensus 234 kt~aQIlLrw~~q~g 248 (300)
T KOG1577|consen 234 KTPAQILLRWALQRG 248 (300)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999998753
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3e-42 Score=272.45 Aligned_cols=160 Identities=32% Similarity=0.423 Sum_probs=143.0
Q ss_pred CCCceecCCCCCcCCcccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHHH--hhcCCch-------
Q 041959 4 AIPEEPLGSTGKSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAEA--LRLASFN------- 74 (172)
Q Consensus 4 ~m~~~~l~~tg~~~p~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~~--~~~~~~~------- 74 (172)
++.+.++++ |.+||.||||||++.+.+.+.+.|.+|++.|||+||||..||||+.+|++|++. +|+.+|.
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s~v~ReelFittKvw~~ 80 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKESGVPREELFITTKVWPS 80 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhcCCCHHHeEEEeecCCc
Confidence 356688888 899999999999976666699999999999999999999999999999999996 3444442
Q ss_pred --------HHHhhhhccCCC-CCCCe--------------------------------eEEcCCCHHHHhh---------
Q 041959 75 --------PATSFSSPQNSG-SPTPI--------------------------------AAVSSRAYKKLSK--------- 104 (172)
Q Consensus 75 --------~~~~~~sL~~l~-d~~~~--------------------------------iGvSn~~~~~~~~--------- 104 (172)
+++++ ||++|| ||+|+ ||||||+.+++++
T Consensus 81 ~~~~~~~~~a~e~-Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p 159 (280)
T COG0656 81 DLGYDETLKALEA-SLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKP 159 (280)
T ss_pred cCCcchHHHHHHH-HHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCC
Confidence 89999 999999 77653 9999999999999
Q ss_pred ------hCCccccHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHhcccC
Q 041959 105 ------TNPIWQQKKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQIAEANGKTVAQLIHNSFFLS 171 (172)
Q Consensus 105 ------~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~ia~~~~~t~aqial~w~~~~ 171 (172)
|||+.++.++++||+++||.++|||||+. | . .++.++.+.+||++||+|++||+|||+++.
T Consensus 160 ~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g----~-~l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~ 226 (280)
T COG0656 160 AVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-G----G-KLLDNPVLAEIAKKYGKTPAQVALRWHIQR 226 (280)
T ss_pred ceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-c----c-ccccChHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999997 2 1 278999999999999999999999999874
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.5e-35 Score=240.47 Aligned_cols=166 Identities=28% Similarity=0.310 Sum_probs=140.4
Q ss_pred CCceecCCCCCcCCcccccccccCC------hhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHHHh-hcCCch
Q 041959 5 IPEEPLGSTGKSIPLVGFGTVEYPL------NEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAEAL-RLASFN 74 (172)
Q Consensus 5 m~~~~l~~tg~~~p~ig~Gt~~~~~------~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~~~-~~~~~~ 74 (172)
|++++|++||+++|+||||||.+.. .+++.+++++|+|+|||+||||+.|| ||+++|+||+.+. |++++.
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vvI 80 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVVI 80 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEEE
Confidence 7899999999999999999999853 23566799999999999999999999 8999999999874 453321
Q ss_pred -------------------------HHHhhhhccCCC-CCCCe------------------------------eEEcCCC
Q 041959 75 -------------------------PATSFSSPQNSG-SPTPI------------------------------AAVSSRA 98 (172)
Q Consensus 75 -------------------------~~~~~~sL~~l~-d~~~~------------------------------iGvSn~~ 98 (172)
++++. ||+||| ||+|+ ||+||++
T Consensus 81 aTK~g~~~~~~~~~~~~~~s~~~i~~~v~~-SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 81 ATKVGYRPGDPGPNGVFGLSRDHIRRAVEA-SLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEeeccCCCCCCCCccCCCCHHHHHHHHHH-HHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 79999 999999 88775 9999999
Q ss_pred HHHHhh--------------hCCcccc--HHHHHHHHHcCceEEEeccCCCCCCCCCCCCC------------CC-----
Q 041959 99 YKKLSK--------------TNPIWQQ--KKLREYRKEKGIHFSACSPLGAVGTNWGHNRV------------ME----- 145 (172)
Q Consensus 99 ~~~~~~--------------~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~------------~~----- 145 (172)
.+++.+ ||.+.++ .+++++|+++||++++|+|+++ |+|+|+... +.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk~~~~~~~~r~~~~~~~~~~~~~ 238 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGKYLPGPEGSRASELPRFQRELTE 238 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCCcCCCcchhhccccccchhhhhH
Confidence 999988 4555543 4699999999999999999999 999876321 10
Q ss_pred -----hHHHHHHHHHhCCCHHHHHHHhcccCC
Q 041959 146 -----NEVLKQIAEANGKTVAQLIHNSFFLST 172 (172)
Q Consensus 146 -----~~~l~~ia~~~~~t~aqial~w~~~~~ 172 (172)
...+.++|+++|+|++|+||+|+++.+
T Consensus 239 ~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~ 270 (316)
T COG0667 239 RGLAILRALEELAKELGATPAQVALAWVLAQP 270 (316)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 145889999999999999999999864
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=6.6e-35 Score=234.90 Aligned_cols=167 Identities=26% Similarity=0.297 Sum_probs=140.2
Q ss_pred CCCceecCCCCCcCCccccccccc------CChhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHHH--hhcCC
Q 041959 4 AIPEEPLGSTGKSIPLVGFGTVEY------PLNEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAEA--LRLAS 72 (172)
Q Consensus 4 ~m~~~~l~~tg~~~p~ig~Gt~~~------~~~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~~--~~~~~ 72 (172)
.|+++.++++|++||++|||+|.+ .+.+++.+++.+|+|+|+|+||||++|| ||.++|++|+++ .|+++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~v 90 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKV 90 (336)
T ss_pred cceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcE
Confidence 388999999999999999999543 2789999999999999999999999999 799999999996 45554
Q ss_pred ch----------------------HHHhhhhccCCC-CCCCe------------------------------eEEcCCCH
Q 041959 73 FN----------------------PATSFSSPQNSG-SPTPI------------------------------AAVSSRAY 99 (172)
Q Consensus 73 ~~----------------------~~~~~~sL~~l~-d~~~~------------------------------iGvSn~~~ 99 (172)
+. +.++. ||++++ ||+|+ ||+||++.
T Consensus 91 viaTK~~~~~~~~~~~G~~~~~i~~~~~~-s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa 169 (336)
T KOG1575|consen 91 VIATKFGFDYGGETPRGLSRKHIIEGVRD-SLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSA 169 (336)
T ss_pred EEEEEEeccCCCcCCCCCcHHHHHHHHHH-HHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCH
Confidence 31 67777 999998 77664 99999999
Q ss_pred HHHhh---------------hCCcccc---HHHHHHHHHcCceEEEeccCCCCCCCCCCCCC------------------
Q 041959 100 KKLSK---------------TNPIWQQ---KKLREYRKEKGIHFSACSPLGAVGTNWGHNRV------------------ 143 (172)
Q Consensus 100 ~~~~~---------------~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~------------------ 143 (172)
+++++ ||.+.++ .+++++|++.||++++||||++ |+|+|+...
T Consensus 170 ~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~Ltgk~~~~e~~~~~~~~~~~~~~~~ 248 (336)
T KOG1575|consen 170 EEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GLLTGKYKLGEDSRNGDKRFQFLGLSP 248 (336)
T ss_pred HHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ceeccCccccccccccccccccccccc
Confidence 99999 4444443 5699999999999999999999 999876211
Q ss_pred CC---------hHHHHHHHHHhCCCHHHHHHHhcccCC
Q 041959 144 ME---------NEVLKQIAEANGKTVAQLIHNSFFLST 172 (172)
Q Consensus 144 ~~---------~~~l~~ia~~~~~t~aqial~w~~~~~ 172 (172)
.. -..+.++|+|+|+|++|+||+|+++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~ 286 (336)
T KOG1575|consen 249 QTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNG 286 (336)
T ss_pred ccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 00 145889999999999999999999864
No 5
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=8.6e-34 Score=226.41 Aligned_cols=157 Identities=29% Similarity=0.437 Sum_probs=134.6
Q ss_pred ceecCCCCCcCCcccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHHH--hhcCCc-----------
Q 041959 7 EEPLGSTGKSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAEA--LRLASF----------- 73 (172)
Q Consensus 7 ~~~l~~tg~~~p~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~~--~~~~~~----------- 73 (172)
+++|++ |+++|.||||||.+ +.+++.+++++|++.|+||||||+.||+|+.+|++++.. .|++++
T Consensus 6 ~~~l~~-g~~v~~lglG~~~~-~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~R~~~~i~tK~~~~~~~ 83 (275)
T PRK11565 6 VIKLQD-GNVMPQLGLGVWQA-SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEASVAREELFITTKLWNDDHK 83 (275)
T ss_pred eEEcCC-CCccCCcceECccC-CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHcCCCHHHEEEEEEecCcchH
Confidence 466765 99999999999994 678899999999999999999999999999999999864 244332
Q ss_pred --hHHHhhhhccCCC-CCCCe-------------------------------eEEcCCCHHHHhh---------------
Q 041959 74 --NPATSFSSPQNSG-SPTPI-------------------------------AAVSSRAYKKLSK--------------- 104 (172)
Q Consensus 74 --~~~~~~~sL~~l~-d~~~~-------------------------------iGvSn~~~~~~~~--------------- 104 (172)
++++++ ||++|+ ||+|+ ||+|||+.+++++
T Consensus 84 ~~~~~~~~-sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~ 162 (275)
T PRK11565 84 RPREALEE-SLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIE 162 (275)
T ss_pred HHHHHHHH-HHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeee
Confidence 289999 999999 76653 9999999999877
Q ss_pred hCCccccHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHhcccC
Q 041959 105 TNPIWQQKKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQIAEANGKTVAQLIHNSFFLS 171 (172)
Q Consensus 105 ~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~ia~~~~~t~aqial~w~~~~ 171 (172)
++++.++.+++++|+++||.+++|+|+++ |. ...+..+.+.++|++||+|++|+||||+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~ 224 (275)
T PRK11565 163 LHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLADKYGKTPAQIVIRWHLDS 224 (275)
T ss_pred cCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 46666678899999999999999999987 42 1245678999999999999999999999875
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=7.3e-34 Score=233.41 Aligned_cols=166 Identities=22% Similarity=0.310 Sum_probs=137.1
Q ss_pred CCCceecCCCCCcCCcccccccc-cC---ChhHHHHHHHHHHHhCCCeeecCCCCC-----ChHHHHHHHHHH---hhcC
Q 041959 4 AIPEEPLGSTGKSIPLVGFGTVE-YP---LNEAFKERVLHAIKLGYRHFDTAAAYP-----SEQPLGEALAEA---LRLA 71 (172)
Q Consensus 4 ~m~~~~l~~tg~~~p~ig~Gt~~-~~---~~~~~~~~v~~a~~~G~~~~DtA~~Yg-----~E~~iG~~l~~~---~~~~ 71 (172)
.|++++|++||++||+||||||. +. +.+++.++++.|++.|||+||||+.|| +|+.+|++|++. .|++
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~ 91 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDE 91 (346)
T ss_pred CcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCe
Confidence 49999999999999999999996 32 457789999999999999999999998 699999999863 2331
Q ss_pred C-----------------------chHHHhhhhccCCC-CCCCe------------------------------eEEcCC
Q 041959 72 S-----------------------FNPATSFSSPQNSG-SPTPI------------------------------AAVSSR 97 (172)
Q Consensus 72 ~-----------------------~~~~~~~~sL~~l~-d~~~~------------------------------iGvSn~ 97 (172)
+ +++++++ ||++|+ ||+|+ ||||||
T Consensus 92 ~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~-SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn~ 170 (346)
T PRK09912 92 LIISTKAGYDMWPGPYGSGGSRKYLLASLDQ-SLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSY 170 (346)
T ss_pred EEEEEEecccCCCCcCCCCCCHHHHHHHHHH-HHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 1 1289999 999999 87765 999999
Q ss_pred CHHHHhh------------------hCCcccc---HHHHHHHHHcCceEEEeccCCCCCCCCCCCC--------------
Q 041959 98 AYKKLSK------------------TNPIWQQ---KKLREYRKEKGIHFSACSPLGAVGTNWGHNR-------------- 142 (172)
Q Consensus 98 ~~~~~~~------------------~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~-------------- 142 (172)
+.+++++ ||++.+. .+++++|+++||++++|+||++ |+|+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G~Lt~~~~~~~~~~~~~~~~~~ 249 (346)
T PRK09912 171 SPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-GLLTGKYLNGIPQDSRMHREGN 249 (346)
T ss_pred CHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-ccccCCCCCCCCCCcccccccc
Confidence 9998764 4554442 4699999999999999999998 99876410
Q ss_pred --------CCC------hHHHHHHHHHhCCCHHHHHHHhcccC
Q 041959 143 --------VME------NEVLKQIAEANGKTVAQLIHNSFFLS 171 (172)
Q Consensus 143 --------~~~------~~~l~~ia~~~~~t~aqial~w~~~~ 171 (172)
.+. .+.+.++|+++|+|++|+||+|+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~ 292 (346)
T PRK09912 250 KVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKD 292 (346)
T ss_pred chhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 001 15788899999999999999999965
No 7
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.9e-33 Score=221.76 Aligned_cols=148 Identities=30% Similarity=0.435 Sum_probs=127.9
Q ss_pred cCCcccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHHH--hhcCCc---------------hHHHh
Q 041959 16 SIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAEA--LRLASF---------------NPATS 78 (172)
Q Consensus 16 ~~p~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~~--~~~~~~---------------~~~~~ 78 (172)
++|.||||||.+ +.+++.++++.|++.||||||||+.||+|..+|++|+.. .|++++ +++++
T Consensus 2 ~vs~lglGt~~~-~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~R~~v~i~TK~~~~~~~~~~~~~~~~ 80 (267)
T PRK11172 2 SIPAFGLGTFRL-KDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAESGVPRDELFITTKIWIDNLAKDKLIPSLK 80 (267)
T ss_pred CCCCEeeEcccc-ChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHcCCChhHeEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999995 467899999999999999999999999999999999853 244332 28999
Q ss_pred hhhccCCC-CCCCe--------------------------------eEEcCCCHHHHhh----------------hCCcc
Q 041959 79 FSSPQNSG-SPTPI--------------------------------AAVSSRAYKKLSK----------------TNPIW 109 (172)
Q Consensus 79 ~~sL~~l~-d~~~~--------------------------------iGvSn~~~~~~~~----------------~~~~~ 109 (172)
+ ||++|+ ||+|+ ||||||+.+++++ +|++.
T Consensus 81 ~-SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~ 159 (267)
T PRK11172 81 E-SLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYL 159 (267)
T ss_pred H-HHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCC
Confidence 9 999998 76653 9999999998876 66777
Q ss_pred ccHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHhcccCC
Q 041959 110 QQKKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQIAEANGKTVAQLIHNSFFLST 172 (172)
Q Consensus 110 ~~~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~ia~~~~~t~aqial~w~~~~~ 172 (172)
++.+++++|+++||++++|+||++ |. .+.++.+.++|+++|+|++|+||+|+++.+
T Consensus 160 ~~~~ll~~~~~~gi~v~a~spl~~-G~------~~~~~~l~~~a~~~~~s~aqval~w~l~~~ 215 (267)
T PRK11172 160 QNRKVVAFAKEHGIHVTSYMTLAY-GK------VLKDPVIARIAAKHNATPAQVILAWAMQLG 215 (267)
T ss_pred CcHHHHHHHHHCCCEEEEECCCCC-Cc------ccCCHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 778999999999999999999998 53 345678999999999999999999998753
No 8
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.3e-33 Score=227.02 Aligned_cols=164 Identities=23% Similarity=0.229 Sum_probs=134.0
Q ss_pred ceecCCCCCcCCccccccccc----CChhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHHH--hhcCC-----
Q 041959 7 EEPLGSTGKSIPLVGFGTVEY----PLNEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAEA--LRLAS----- 72 (172)
Q Consensus 7 ~~~l~~tg~~~p~ig~Gt~~~----~~~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~~--~~~~~----- 72 (172)
+++|++||+++|+||||||.+ .+.+++.++|+.|++.|||+||||+.|| ||+.+|++|+.. .|+.+
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK 80 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTK 80 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEee
Confidence 467899999999999999963 3678899999999999999999999998 799999999853 23321
Q ss_pred -----------------chHHHhhhhccCCC-CCCCe------------------------------eEEcCCCHHHHhh
Q 041959 73 -----------------FNPATSFSSPQNSG-SPTPI------------------------------AAVSSRAYKKLSK 104 (172)
Q Consensus 73 -----------------~~~~~~~~sL~~l~-d~~~~------------------------------iGvSn~~~~~~~~ 104 (172)
++++|++ ||++|+ ||+|+ ||+|||+..++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~~~~-SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~ 159 (317)
T TIGR01293 81 IFWGGKAETERGLSRKHIIEGLKA-SLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIME 159 (317)
T ss_pred eccCCCCCCCCCCCHHHHHHHHHH-HHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHH
Confidence 1289999 999999 88775 9999999988766
Q ss_pred -------------------hCCcccc---HHHHHHHHHcCceEEEeccCCCCCCCCCCCCC---------------C---
Q 041959 105 -------------------TNPIWQQ---KKLREYRKEKGIHFSACSPLGAVGTNWGHNRV---------------M--- 144 (172)
Q Consensus 105 -------------------~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~---------------~--- 144 (172)
||++.++ .+++++|+++||++++|+||++ |+++++... +
T Consensus 160 ~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~ 238 (317)
T TIGR01293 160 AYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYDSGIPPYSRATLKGYQWLKDK 238 (317)
T ss_pred HHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCCCCCCCcccccccccchhhhh
Confidence 3334433 3689999999999999999998 998764210 0
Q ss_pred --Ch---------HHHHHHHHHhCCCHHHHHHHhcccCC
Q 041959 145 --EN---------EVLKQIAEANGKTVAQLIHNSFFLST 172 (172)
Q Consensus 145 --~~---------~~l~~ia~~~~~t~aqial~w~~~~~ 172 (172)
.+ +.++++|+++|+|++|+||+|+++.+
T Consensus 239 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~ 277 (317)
T TIGR01293 239 ILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNE 277 (317)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCC
Confidence 01 46889999999999999999999753
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=8.7e-33 Score=224.26 Aligned_cols=164 Identities=24% Similarity=0.253 Sum_probs=132.2
Q ss_pred ceecCCCCCcCCcccccccccC------ChhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHHH--hhcCCc--
Q 041959 7 EEPLGSTGKSIPLVGFGTVEYP------LNEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAEA--LRLASF-- 73 (172)
Q Consensus 7 ~~~l~~tg~~~p~ig~Gt~~~~------~~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~~--~~~~~~-- 73 (172)
|++|++||+++|.||||||.+. +.+++.+++++|++.|||+||||+.|| +|+.+|++|++. .|++++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I~ 80 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVVS 80 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEEE
Confidence 5689999999999999999763 578899999999999999999999997 699999999863 244322
Q ss_pred -----------------hHHHhhhhccCCC-CCCCe---------------------------------eEEcCCCHHHH
Q 041959 74 -----------------NPATSFSSPQNSG-SPTPI---------------------------------AAVSSRAYKKL 102 (172)
Q Consensus 74 -----------------~~~~~~~sL~~l~-d~~~~---------------------------------iGvSn~~~~~~ 102 (172)
++++++ ||++|+ ||+|+ ||+|||+.+++
T Consensus 81 TK~~~~~~~~~~~~~~i~~~~e~-SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~ 159 (314)
T PLN02587 81 TKCGRYGEGFDFSAERVTKSVDE-SLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIF 159 (314)
T ss_pred eccccCCCCCCCCHHHHHHHHHH-HHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHH
Confidence 279999 999999 76653 99999998876
Q ss_pred hh------------------hCCcccc-HHHHHHHHHcCceEEEeccCCCCCCCCCCCC-CC--C-------hHHHHHHH
Q 041959 103 SK------------------TNPIWQQ-KKLREYRKEKGIHFSACSPLGAVGTNWGHNR-VM--E-------NEVLKQIA 153 (172)
Q Consensus 103 ~~------------------~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~-~~--~-------~~~l~~ia 153 (172)
+. ++...+. .+++++|+++||++++|+||++ |+++++.. .. . .+.++++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~~~~~l~~~a 238 (314)
T PLN02587 160 TYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWHPAPPELKSACAAAATHC 238 (314)
T ss_pred HHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 54 1111111 4899999999999999999998 99986521 11 1 13467899
Q ss_pred HHhCCCHHHHHHHhcccCC
Q 041959 154 EANGKTVAQLIHNSFFLST 172 (172)
Q Consensus 154 ~~~~~t~aqial~w~~~~~ 172 (172)
+++++|++|+||||+++.+
T Consensus 239 ~~~~~s~aq~al~~~l~~~ 257 (314)
T PLN02587 239 KEKGKNISKLALQYSLSNK 257 (314)
T ss_pred HHhCCCHHHHHHHHHHhCC
Confidence 9999999999999999754
No 10
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=226.11 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=134.2
Q ss_pred CCceecCCCCCcCCcccccccccC---ChhHHHHHHHHHHHhCCCeeecCCCCC----------ChHHHHHHHHHH-hhc
Q 041959 5 IPEEPLGSTGKSIPLVGFGTVEYP---LNEAFKERVLHAIKLGYRHFDTAAAYP----------SEQPLGEALAEA-LRL 70 (172)
Q Consensus 5 m~~~~l~~tg~~~p~ig~Gt~~~~---~~~~~~~~v~~a~~~G~~~~DtA~~Yg----------~E~~iG~~l~~~-~~~ 70 (172)
|++++|++||+.+|+||||||.+. +.+++.++|+.|++.|||+||||+.|| ||..+|++|+.. .|+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~ 80 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSRE 80 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcc
Confidence 789999999999999999999874 578899999999999999999999996 899999999742 122
Q ss_pred C------C---------------------chHHHhhhhccCCC-CCC-----------------------------Ce--
Q 041959 71 A------S---------------------FNPATSFSSPQNSG-SPT-----------------------------PI-- 91 (172)
Q Consensus 71 ~------~---------------------~~~~~~~~sL~~l~-d~~-----------------------------~~-- 91 (172)
+ + +++++++ ||++|+ ||+ ++
T Consensus 81 ~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~-SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e 159 (346)
T PRK10625 81 KLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHD-SLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLE 159 (346)
T ss_pred eEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHH-HHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHH
Confidence 1 1 1289999 999987 421 12
Q ss_pred ----------------eEEcCCCHHHHhh-------------------hCCcccc--HHHHHHHHHcCceEEEeccCCCC
Q 041959 92 ----------------AAVSSRAYKKLSK-------------------TNPIWQQ--KKLREYRKEKGIHFSACSPLGAV 134 (172)
Q Consensus 92 ----------------iGvSn~~~~~~~~-------------------~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~ 134 (172)
||+|||+..++++ ||++.++ .+++++|+++||.+++|+||++
T Consensus 160 ~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~- 238 (346)
T PRK10625 160 TLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAF- 238 (346)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccC-
Confidence 9999999987654 3444333 5799999999999999999998
Q ss_pred CCCCCCCC-----------CCC-------------hHHHHHHHHHhCCCHHHHHHHhcccCC
Q 041959 135 GTNWGHNR-----------VME-------------NEVLKQIAEANGKTVAQLIHNSFFLST 172 (172)
Q Consensus 135 g~~~g~~~-----------~~~-------------~~~l~~ia~~~~~t~aqial~w~~~~~ 172 (172)
|+++++.. .+. .+.+.++|++||+|++|+||+|+++.+
T Consensus 239 G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~ 300 (346)
T PRK10625 239 GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQP 300 (346)
T ss_pred eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 99876420 111 257889999999999999999999753
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.97 E-value=1.6e-31 Score=213.44 Aligned_cols=164 Identities=33% Similarity=0.349 Sum_probs=138.9
Q ss_pred ceecCCCCCcCCcccccccccC----ChhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHHHh-hcCCc-----
Q 041959 7 EEPLGSTGKSIPLVGFGTVEYP----LNEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAEAL-RLASF----- 73 (172)
Q Consensus 7 ~~~l~~tg~~~p~ig~Gt~~~~----~~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~~~-~~~~~----- 73 (172)
+++|++||+++|+||||||.+. +.+++.++++.|++.|||+||||+.|| +|+.+|++|+... |+.++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~ 80 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKV 80 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeee
Confidence 4678988999999999999874 458999999999999999999999999 8999999999864 55432
Q ss_pred ---------------hHHHhhhhccCCC-CCCCe-------------------------------eEEcCCCHHHHhh--
Q 041959 74 ---------------NPATSFSSPQNSG-SPTPI-------------------------------AAVSSRAYKKLSK-- 104 (172)
Q Consensus 74 ---------------~~~~~~~sL~~l~-d~~~~-------------------------------iGvSn~~~~~~~~-- 104 (172)
++++++ ||++|+ ||+|+ ||+|||+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~-sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 159 (285)
T cd06660 81 GPRPGDGRDLSPEHIRRAVEE-SLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEAL 159 (285)
T ss_pred cCCCCCCCCCCHHHHHHHHHH-HHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHH
Confidence 189999 999998 77664 9999999988877
Q ss_pred -------------hCCccccH--HHHHHHHHcCceEEEeccCCCCCCCCCCCCCCC-------hHHHHHHHHHhCCCHHH
Q 041959 105 -------------TNPIWQQK--KLREYRKEKGIHFSACSPLGAVGTNWGHNRVME-------NEVLKQIAEANGKTVAQ 162 (172)
Q Consensus 105 -------------~~~~~~~~--~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~-------~~~l~~ia~~~~~t~aq 162 (172)
+|++.+.. +++++|+++||++++|+||++ |.+.+...... .+.+..+++++++|++|
T Consensus 160 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q 238 (285)
T cd06660 160 AAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQ 238 (285)
T ss_pred HhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCChhhHHHHHHHHHHHhCCCHHH
Confidence 66666664 599999999999999999998 88765432221 36788999999999999
Q ss_pred HHHHhcccCC
Q 041959 163 LIHNSFFLST 172 (172)
Q Consensus 163 ial~w~~~~~ 172 (172)
+|++|+++.+
T Consensus 239 ~al~~~l~~p 248 (285)
T cd06660 239 VALRWLLQQP 248 (285)
T ss_pred HHHHHHhcCC
Confidence 9999999863
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=99.97 E-value=4.2e-31 Score=212.30 Aligned_cols=160 Identities=23% Similarity=0.292 Sum_probs=128.9
Q ss_pred CCCCCC--ceecCCCCCcCCcccccccccC---------ChhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHH
Q 041959 1 MRTAIP--EEPLGSTGKSIPLVGFGTVEYP---------LNEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAE 66 (172)
Q Consensus 1 ~~~~m~--~~~l~~tg~~~p~ig~Gt~~~~---------~~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~ 66 (172)
|...|. +++|+ |+++|+||||||.+. +.+++.++++.|++.|||+||||+.|| +|+.+|++++.
T Consensus 1 ~~~~~~~~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~ 78 (290)
T PRK10376 1 MSTIMSSGTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP 78 (290)
T ss_pred CcccccCCceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc
Confidence 344443 34554 999999999999863 357899999999999999999999998 58999999964
Q ss_pred HhhcCC------------------------chHHHhhhhccCCC-CCCCe------------------------------
Q 041959 67 ALRLAS------------------------FNPATSFSSPQNSG-SPTPI------------------------------ 91 (172)
Q Consensus 67 ~~~~~~------------------------~~~~~~~~sL~~l~-d~~~~------------------------------ 91 (172)
. |+++ +++++++ ||++|+ ||+|+
T Consensus 79 ~-R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~-SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~ 156 (290)
T PRK10376 79 Y-PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHD-NLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQ 156 (290)
T ss_pred C-CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHH-HHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 2 2211 1289999 999998 55431
Q ss_pred -----eEEcCCCHHHHhh-------------hCCcccc-HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHH
Q 041959 92 -----AAVSSRAYKKLSK-------------TNPIWQQ-KKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQI 152 (172)
Q Consensus 92 -----iGvSn~~~~~~~~-------------~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~i 152 (172)
||+|||+.+++++ ||++.+. .+++++|+++||++++|+||++ + ..+..+.+.++
T Consensus 157 Gkir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~------~~~~~~~l~~i 229 (290)
T PRK10376 157 GLVRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-F------TPLQSSTLSDV 229 (290)
T ss_pred CceeEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-C------ChhhhHHHHHH
Confidence 9999999999876 6666554 6799999999999999999985 2 12245789999
Q ss_pred HHHhCCCHHHHHHHhcccC
Q 041959 153 AEANGKTVAQLIHNSFFLS 171 (172)
Q Consensus 153 a~~~~~t~aqial~w~~~~ 171 (172)
|+++|+|++|+||+|+++.
T Consensus 230 a~~~~~t~aq~al~w~l~~ 248 (290)
T PRK10376 230 AASLGATPMQVALAWLLQR 248 (290)
T ss_pred HHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999964
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.97 E-value=5.6e-31 Score=211.81 Aligned_cols=156 Identities=11% Similarity=0.105 Sum_probs=127.2
Q ss_pred CCcCCcccccccccC-------------ChhHHHHHHHHHHHhCCCeeecCCCCC-ChHHHHHHHHHHhhcCCc------
Q 041959 14 GKSIPLVGFGTVEYP-------------LNEAFKERVLHAIKLGYRHFDTAAAYP-SEQPLGEALAEALRLASF------ 73 (172)
Q Consensus 14 g~~~p~ig~Gt~~~~-------------~~~~~~~~v~~a~~~G~~~~DtA~~Yg-~E~~iG~~l~~~~~~~~~------ 73 (172)
++++|+||||||.+. +.+++.++++.|++.|||+||||+.|| ||..+|++|++..++.++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~~~~~~~i~tk~~ 81 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRPVPFRVTLSTVRA 81 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccCCceEeecccccc
Confidence 678999999999774 468899999999999999999999999 899999999752122121
Q ss_pred -------hHHHhhhhccCCC-CCCCe--------------------------------eEEcCCCHHHHhh---------
Q 041959 74 -------NPATSFSSPQNSG-SPTPI--------------------------------AAVSSRAYKKLSK--------- 104 (172)
Q Consensus 74 -------~~~~~~~sL~~l~-d~~~~--------------------------------iGvSn~~~~~~~~--------- 104 (172)
++++++ ||++|+ ||+|+ ||+|||+.+++.+
T Consensus 82 ~~~~~~i~~~~e~-SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~ 160 (292)
T PRK14863 82 DRGPDFVEAEARA-SLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARRFKPDI 160 (292)
T ss_pred cccHHHHHHHHHH-HHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhcCCCCE
Confidence 289999 999999 77664 9999999988776
Q ss_pred ----hCCcccc---HHHHHHHHHcCceEEEeccCCCCCCCCCCCCC----CC-----hHHHHHHHHHhCCCHHHHHHHhc
Q 041959 105 ----TNPIWQQ---KKLREYRKEKGIHFSACSPLGAVGTNWGHNRV----ME-----NEVLKQIAEANGKTVAQLIHNSF 168 (172)
Q Consensus 105 ----~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~----~~-----~~~l~~ia~~~~~t~aqial~w~ 168 (172)
+|++.++ .+++++|+++||++++|+||++ |++.+.... +. -..+.++++++++|++|+||+|+
T Consensus 161 ~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~ 239 (292)
T PRK14863 161 LQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFA 239 (292)
T ss_pred EEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7777764 3599999999999999999998 888643211 11 13466788888999999999999
Q ss_pred ccC
Q 041959 169 FLS 171 (172)
Q Consensus 169 ~~~ 171 (172)
++.
T Consensus 240 l~~ 242 (292)
T PRK14863 240 LSR 242 (292)
T ss_pred HhC
Confidence 964
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.97 E-value=3.2e-31 Score=203.83 Aligned_cols=167 Identities=22% Similarity=0.231 Sum_probs=140.4
Q ss_pred CCceecCCCCCcCCccccccccc----CChhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHHH--hhcCCch-
Q 041959 5 IPEEPLGSTGKSIPLVGFGTVEY----PLNEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAEA--LRLASFN- 74 (172)
Q Consensus 5 m~~~~l~~tg~~~p~ig~Gt~~~----~~~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~~--~~~~~~~- 74 (172)
|+++++++.|+++|+|.+|+|++ ....+....+.+|+|.||++||.|+.|| +|+.+|.+|+.. .|+++..
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRekieiv 80 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKIEIV 80 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhheEee
Confidence 78899997799999999999997 3567899999999999999999999999 699999999865 3554321
Q ss_pred --------------------------HHHhhhhccCCC-CCCCe------------------------------eEEcCC
Q 041959 75 --------------------------PATSFSSPQNSG-SPTPI------------------------------AAVSSR 97 (172)
Q Consensus 75 --------------------------~~~~~~sL~~l~-d~~~~------------------------------iGvSn~ 97 (172)
.++|+ ||++|+ ||+|. .|||||
T Consensus 81 sKCGI~~~s~~~~~~~hydts~~HI~~SVe~-SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVSNf 159 (298)
T COG4989 81 SKCGIRLPSREEPRIGHYDTSKEHIIKSVEQ-SLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVSNF 159 (298)
T ss_pred eccccccccccccccccccCcHHHHHHHHHH-HHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecCCC
Confidence 89999 999999 88764 999999
Q ss_pred CHHHHhh---------------hCCcccc---HHHHHHHHHcCceEEEeccCCCCCCCCCCCC-CCChHHHHHHHHHhC-
Q 041959 98 AYKKLSK---------------TNPIWQQ---KKLREYRKEKGIHFSACSPLGAVGTNWGHNR-VMENEVLKQIAEANG- 157 (172)
Q Consensus 98 ~~~~~~~---------------~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~-~~~~~~l~~ia~~~~- 157 (172)
++.|++- ++|+.+. +..+++|+.+.|.+++||||++.|++.|.+. ....+++.++|+++|
T Consensus 160 ~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~~q~l~~~l~~ia~e~ga 239 (298)
T COG4989 160 NPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEYGA 239 (298)
T ss_pred CHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcchHHHHHHHHHHHHHhCc
Confidence 9999887 4454442 6799999999999999999998677765221 112479999999999
Q ss_pred CCHHHHHHHhcccCC
Q 041959 158 KTVAQLIHNSFFLST 172 (172)
Q Consensus 158 ~t~aqial~w~~~~~ 172 (172)
+|..+|+++|+++-|
T Consensus 240 ~s~~~VaiAWllR~P 254 (298)
T COG4989 240 VSITAVAIAWLLRHP 254 (298)
T ss_pred ccHHHHHHHHHHhCc
Confidence 899999999998754
No 15
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.96 E-value=3.4e-29 Score=199.76 Aligned_cols=151 Identities=28% Similarity=0.336 Sum_probs=122.4
Q ss_pred ccccccccc----CChhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHH--HhhcCCch---------------
Q 041959 19 LVGFGTVEY----PLNEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAE--ALRLASFN--------------- 74 (172)
Q Consensus 19 ~ig~Gt~~~----~~~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~--~~~~~~~~--------------- 74 (172)
+||||||++ .+.+++.++++.|++.|||+||||+.|| +|+.+|+++++ ..|+.++.
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~ 80 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYS 80 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSS
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 589999986 4789999999999999999999999993 89999999999 34554331
Q ss_pred -----HHHhhhhccCCC-CCCCe-------------------------------eEEcCCCHHHHhh-------------
Q 041959 75 -----PATSFSSPQNSG-SPTPI-------------------------------AAVSSRAYKKLSK------------- 104 (172)
Q Consensus 75 -----~~~~~~sL~~l~-d~~~~-------------------------------iGvSn~~~~~~~~------------- 104 (172)
+++++ ||++|+ ||+|+ ||||||+.+++++
T Consensus 81 ~~~i~~~~~~-sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q 159 (283)
T PF00248_consen 81 PDSIRESLER-SLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQ 159 (283)
T ss_dssp HHHHHHHHHH-HHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEE
T ss_pred cccccccccc-ccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccc
Confidence 89999 999999 87765 9999999998887
Q ss_pred --hCCcc--ccHHHHHHHHHcCceEEEeccCCCCCCCCCCCCC--------------CChHHHHHHHHHhCCCHHHHHHH
Q 041959 105 --TNPIW--QQKKLREYRKEKGIHFSACSPLGAVGTNWGHNRV--------------MENEVLKQIAEANGKTVAQLIHN 166 (172)
Q Consensus 105 --~~~~~--~~~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~--------------~~~~~l~~ia~~~~~t~aqial~ 166 (172)
+|++. ..++++++|+++||++++|+|+++ |++.++... ...+.+.++++++++|++|+||+
T Consensus 160 ~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~ 238 (283)
T PF00248_consen 160 INYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQLALR 238 (283)
T ss_dssp EE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhhhhhhhhhhcccccchhhhh
Confidence 66662 347999999999999999999998 887644211 34578999999999999999999
Q ss_pred hcccC
Q 041959 167 SFFLS 171 (172)
Q Consensus 167 w~~~~ 171 (172)
|+++.
T Consensus 239 ~~l~~ 243 (283)
T PF00248_consen 239 WVLSH 243 (283)
T ss_dssp HHHTS
T ss_pred hhhhc
Confidence 99863
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.93 E-value=9.2e-26 Score=181.82 Aligned_cols=161 Identities=24% Similarity=0.254 Sum_probs=135.0
Q ss_pred CCceecCCCCCcCCcccccccccC-------ChhHHHHHHHHHHHhCCCeeecCCCC--C-ChHHHHHHHHHHhhcCCch
Q 041959 5 IPEEPLGSTGKSIPLVGFGTVEYP-------LNEAFKERVLHAIKLGYRHFDTAAAY--P-SEQPLGEALAEALRLASFN 74 (172)
Q Consensus 5 m~~~~l~~tg~~~p~ig~Gt~~~~-------~~~~~~~~v~~a~~~G~~~~DtA~~Y--g-~E~~iG~~l~~~~~~~~~~ 74 (172)
|.|+++++||.++|.+|||+|++. +.+.+.++|++|+++||||||||+.| | ||..+|++|++..|+++..
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 789999999999999999999972 67889999999999999999999999 7 8999999999987776542
Q ss_pred ----------------HHHhhhhccCCC-CCCCe----------------------------------eEEcCCCHHHHh
Q 041959 75 ----------------PATSFSSPQNSG-SPTPI----------------------------------AAVSSRAYKKLS 103 (172)
Q Consensus 75 ----------------~~~~~~sL~~l~-d~~~~----------------------------------iGvSn~~~~~~~ 103 (172)
+-+++ +|++++ ||+|+ +|+|.|+..++-
T Consensus 81 aTKlp~~~~~~~edm~r~fne-qLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~ 159 (391)
T COG1453 81 ATKLPSWPVKDREDMERIFNE-QLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVF 159 (391)
T ss_pred EeecCCccccCHHHHHHHHHH-HHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHH
Confidence 78999 999999 88875 899999987766
Q ss_pred h--------------hCCccc--c--HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhC--CCHHHH
Q 041959 104 K--------------TNPIWQ--Q--KKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQIAEANG--KTVAQL 163 (172)
Q Consensus 104 ~--------------~~~~~~--~--~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~ia~~~~--~t~aqi 163 (172)
. ++-+.+ + .+.+++|.++|++|+.++|+.+ |-+. .--.+++.++.++++ .||+..
T Consensus 160 ~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~----~~vP~~~~~l~~~~~~~~sP~~w 234 (391)
T COG1453 160 KEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLL----YNVPEKLEELCRPASPKRSPAEW 234 (391)
T ss_pred HHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcc----cCCCHHHHHHHHhcCCCCCcHHH
Confidence 5 222222 1 2789999999999999999998 4221 112478999999996 699999
Q ss_pred HHHhcccC
Q 041959 164 IHNSFFLS 171 (172)
Q Consensus 164 al~w~~~~ 171 (172)
|+||+++-
T Consensus 235 a~R~~~sh 242 (391)
T COG1453 235 ALRYLLSH 242 (391)
T ss_pred HHHHHhcC
Confidence 99999864
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.89 E-value=2e-23 Score=162.20 Aligned_cols=166 Identities=21% Similarity=0.210 Sum_probs=134.3
Q ss_pred CCCCceecCCCCCcCCccccccccc----C--ChhHHHHHHHHHHHhCCCeeecCCCCC---ChHHHHHHHHHHhhcCCc
Q 041959 3 TAIPEEPLGSTGKSIPLVGFGTVEY----P--LNEAFKERVLHAIKLGYRHFDTAAAYP---SEQPLGEALAEALRLASF 73 (172)
Q Consensus 3 ~~m~~~~l~~tg~~~p~ig~Gt~~~----~--~~~~~~~~v~~a~~~G~~~~DtA~~Yg---~E~~iG~~l~~~~~~~~~ 73 (172)
++|+++.+++||++||+||||...+ . +.++....|..|+++|||+||||+.|| +|..+|.++++.+|+..+
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 4699999999999999999998654 2 667777778889999999999999999 799999999988776433
Q ss_pred -----------------------hHHHhhhhccCCC-CCCCe----------------------------------eEEc
Q 041959 74 -----------------------NPATSFSSPQNSG-SPTPI----------------------------------AAVS 95 (172)
Q Consensus 74 -----------------------~~~~~~~sL~~l~-d~~~~----------------------------------iGvS 95 (172)
|+++++ ||+||+ ||+|+ ||+|
T Consensus 100 IaTKvgRy~ld~~~~FdfsadkvreSv~r-SlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 100 IATKVGRYELDYANMFDFSADKVRESVKR-SLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeecccCccccccchHHHHHHHHHH-HHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 289999 999999 87764 9999
Q ss_pred CCCHHHHhh---------------hCCcccc---HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCCh---HHH-----
Q 041959 96 SRAYKKLSK---------------TNPIWQQ---KKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMEN---EVL----- 149 (172)
Q Consensus 96 n~~~~~~~~---------------~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~---~~l----- 149 (172)
.|..+-+.+ ++-.+++ ...+++.+.+|++|+.-++++. |+++..++.-.+ +++
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt~~gp~~wHPaS~Elk~~a~ 257 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLTNQGPPPWHPASDELKEAAK 257 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhhcCCCCCCCCCCHHHHHHHH
Confidence 999998777 2222233 3566778899999999999999 999876543322 333
Q ss_pred --HHHHHHhCCCHHHHHHHhccc
Q 041959 150 --KQIAEANGKTVAQLIHNSFFL 170 (172)
Q Consensus 150 --~~ia~~~~~t~aqial~w~~~ 170 (172)
.+.|++.|+..+.+|++|.++
T Consensus 258 ~aa~~Cq~rnv~l~kLA~~Yam~ 280 (342)
T KOG1576|consen 258 AAAEYCQSRNVELGKLAMYYAMS 280 (342)
T ss_pred HHHHHHHHcCccHHHHHHHHHHc
Confidence 356778899999999999875
No 18
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.18 E-value=11 Score=30.05 Aligned_cols=112 Identities=15% Similarity=0.008 Sum_probs=62.2
Q ss_pred ccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCCh----HHHHHHHHHHhhcCCchHHHhhhhccCCC--CCCCee-
Q 041959 20 VGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSE----QPLGEALAEALRLASFNPATSFSSPQNSG--SPTPIA- 92 (172)
Q Consensus 20 ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E----~~iG~~l~~~~~~~~~~~~~~~~sL~~l~--d~~~~i- 92 (172)
|.|=|.++++.+...++++...+.|.+.+.-.--|... ..|-++-.+..+.|...+.+=+ .++++. ..+|++
T Consensus 18 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~-~~~~~r~~~~~p~vl 96 (263)
T CHL00200 18 IPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILS-ILSEVNGEIKAPIVI 96 (263)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHH-HHHHHhcCCCCCEEE
Confidence 44445566788999999999999999999988766632 3333333333344543222222 222222 224543
Q ss_pred ----------EEcCCCHHHHhh------hC--CccccHHHHHHHHHcCceEEEeccCC
Q 041959 93 ----------AVSSRAYKKLSK------TN--PIWQQKKLREYRKEKGIHFSACSPLG 132 (172)
Q Consensus 93 ----------GvSn~~~~~~~~------~~--~~~~~~~l~~~~~~~gi~v~a~~pl~ 132 (172)
|+.+|-..-.+. ++ |.....++.+.|+++|+.++..-+-.
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 333332111111 11 22333678899999999887664443
No 19
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=79.29 E-value=23 Score=29.84 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHH
Q 041959 29 LNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEA 63 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~ 63 (172)
...+..+.++.++++|+- .+.|+++++....
T Consensus 39 ~pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai 69 (388)
T COG1168 39 TPPEIIEALRERVDHGVF----GYPYGSDELYAAI 69 (388)
T ss_pred CCHHHHHHHHHHHhcCCC----CCCCCCHHHHHHH
Confidence 466788899999998853 3446677555443
No 20
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=79.14 E-value=2.6 Score=25.91 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCHHHHHHHhcc
Q 041959 148 VLKQIAEANGKTVAQLIHNSFF 169 (172)
Q Consensus 148 ~l~~ia~~~~~t~aqial~w~~ 169 (172)
...+||+++|.++..++..|..
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4679999999999999999963
No 21
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=78.39 E-value=30 Score=27.74 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=62.0
Q ss_pred cccccccCChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHH----HhhcCCchHHHhhhhccCCC---CCCCeeE
Q 041959 21 GFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAE----ALRLASFNPATSFSSPQNSG---SPTPIAA 93 (172)
Q Consensus 21 g~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~----~~~~~~~~~~~~~~sL~~l~---d~~~~iG 93 (172)
.|=|.+.++.+...+.++...+.|...|...--|...-.=|-.|+. ..+.|+..+.+=+ .++... ..+|++=
T Consensus 21 ~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~le-l~~~~r~~~~~~Pivl 99 (265)
T COG0159 21 PYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLE-LVEEIRAKGVKVPIVL 99 (265)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHH-HHHHHHhcCCCCCEEE
Confidence 3334444678999999999999999999988777633222333332 2334543322222 233322 2344421
Q ss_pred EcC------CCHHHHhh----------hC---CccccHHHHHHHHHcCceEEEeccCCC
Q 041959 94 VSS------RAYKKLSK----------TN---PIWQQKKLREYRKEKGIHFSACSPLGA 133 (172)
Q Consensus 94 vSn------~~~~~~~~----------~~---~~~~~~~l~~~~~~~gi~v~a~~pl~~ 133 (172)
.+= ++.+.+-+ +- |.....++.++|+++||.++-..+-..
T Consensus 100 m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 100 MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 111 11222111 11 222336799999999999987766554
No 22
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=78.25 E-value=3.3 Score=32.75 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=30.2
Q ss_pred eEEcCCCHHHHhhh------CCccc----------cHHHHHHHHHcCceEEEec
Q 041959 92 AAVSSRAYKKLSKT------NPIWQ----------QKKLREYRKEKGIHFSACS 129 (172)
Q Consensus 92 iGvSn~~~~~~~~~------~~~~~----------~~~l~~~~~~~gi~v~a~~ 129 (172)
||||.|+..+++++ -|-.. ..+|.+||.+|+|.+...+
T Consensus 174 lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 174 LGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred eeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 99999999999991 12111 2699999999999998765
No 23
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=77.49 E-value=16 Score=29.10 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=59.6
Q ss_pred ccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCC----hHHHHHHHHHHhhcCCchHHHhhhhccCCC---CCCCe-
Q 041959 20 VGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPS----EQPLGEALAEALRLASFNPATSFSSPQNSG---SPTPI- 91 (172)
Q Consensus 20 ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~----E~~iG~~l~~~~~~~~~~~~~~~~sL~~l~---d~~~~- 91 (172)
|+|=|.++++.+...++++...+.|++++.-.--|.. -..|-++-.+..+.|...+.+=+ .++++. ..+|+
T Consensus 13 i~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~-~~~~ir~~~~~~piv 91 (259)
T PF00290_consen 13 IPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFE-LVKEIRKKEPDIPIV 91 (259)
T ss_dssp EEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHH-HHHHHHHHCTSSEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH-HHHHHhccCCCCCEE
Confidence 4555666678899999999999999999998755552 24444443333344543222111 222221 23444
Q ss_pred ----------eEEcCCCHHHHhh------hC---CccccHHHHHHHHHcCceEEEeccC
Q 041959 92 ----------AAVSSRAYKKLSK------TN---PIWQQKKLREYRKEKGIHFSACSPL 131 (172)
Q Consensus 92 ----------iGvSn~~~~~~~~------~~---~~~~~~~l~~~~~~~gi~v~a~~pl 131 (172)
.|+-+|- ....+ += |+....++.+.|+++|+.++.+-+-
T Consensus 92 lm~Y~N~i~~~G~e~F~-~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p 149 (259)
T PF00290_consen 92 LMTYYNPIFQYGIERFF-KEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAP 149 (259)
T ss_dssp EEE-HHHHHHH-HHHHH-HHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEET
T ss_pred EEeeccHHhccchHHHH-HHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECC
Confidence 2333331 11111 11 2333468889999999998877554
No 24
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=71.05 E-value=5.2 Score=28.47 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=29.1
Q ss_pred eEEcCCCHHHHhhhCCcccc---HHHHHHHHHcCceEEEeccCC
Q 041959 92 AAVSSRAYKKLSKTNPIWQQ---KKLREYRKEKGIHFSACSPLG 132 (172)
Q Consensus 92 iGvSn~~~~~~~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~ 132 (172)
-|++-|.... ...||...+ .++++.|+++||.|++|-.+.
T Consensus 25 ~g~ayYPt~~-~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 25 GGYAYYPTKV-GPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cEEEEccCCC-CcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4566665554 334565543 689999999999999997775
No 25
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.78 E-value=54 Score=26.03 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=59.3
Q ss_pred ccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCCh----HHHHHHHHHHhhcCCchHHHhhhhccCCC---CCCCee
Q 041959 20 VGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSE----QPLGEALAEALRLASFNPATSFSSPQNSG---SPTPIA 92 (172)
Q Consensus 20 ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E----~~iG~~l~~~~~~~~~~~~~~~~sL~~l~---d~~~~i 92 (172)
+.|=|.++++.+...++++...+.|++.+.-.--|... ..|-++-.+..+.|...+.+=+ .++++. ..+|++
T Consensus 15 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~-~~~~~r~~~~~~p~v 93 (258)
T PRK13111 15 IPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFE-LVREIREKDPTIPIV 93 (258)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHH-HHHHHHhcCCCCCEE
Confidence 34445555788999999999999999999988777632 3333333333344543222222 222222 124543
Q ss_pred EEcC------CCHHHHhh-----------hC--CccccHHHHHHHHHcCceEEE
Q 041959 93 AVSS------RAYKKLSK-----------TN--PIWQQKKLREYRKEKGIHFSA 127 (172)
Q Consensus 93 GvSn------~~~~~~~~-----------~~--~~~~~~~l~~~~~~~gi~v~a 127 (172)
=.+= |+.+.+.+ +. |+....++++.|+++|+..+.
T Consensus 94 lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 94 LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred EEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 2221 12222222 11 222236788889999988886
No 26
>PLN02591 tryptophan synthase
Probab=68.46 E-value=57 Score=25.80 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=62.3
Q ss_pred cccccccCChhHHHHHHHHHHHhCCCeeecCCCCCCh----HHHHHHHHHHhhcCCchHHHhhhhccCCC--CCCCeeEE
Q 041959 21 GFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSE----QPLGEALAEALRLASFNPATSFSSPQNSG--SPTPIAAV 94 (172)
Q Consensus 21 g~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E----~~iG~~l~~~~~~~~~~~~~~~~sL~~l~--d~~~~iGv 94 (172)
.|=|.+.++.+...++++...+.|++.+.-.--|..- ..|-++-.+..+.|...+.+=+ .++++. ..+|++=.
T Consensus 6 ~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~-~~~~~r~~~~~p~ilm 84 (250)
T PLN02591 6 PYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVIS-MLKEVAPQLSCPIVLF 84 (250)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHH-HHHHHhcCCCCCEEEE
Confidence 3444555788899999999999999999988766632 3333333333344543222222 222222 23565422
Q ss_pred cCCCH------HHH----hh-------hC--CccccHHHHHHHHHcCceEEEeccC
Q 041959 95 SSRAY------KKL----SK-------TN--PIWQQKKLREYRKEKGIHFSACSPL 131 (172)
Q Consensus 95 Sn~~~------~~~----~~-------~~--~~~~~~~l~~~~~~~gi~v~a~~pl 131 (172)
+=|++ +.+ .+ +. |+....++.+.|+++|+..+...+-
T Consensus 85 ~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 85 TYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred ecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 22222 111 11 11 2223468999999999999887633
No 27
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=67.10 E-value=61 Score=25.62 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=63.6
Q ss_pred ccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCC----hHHHHHHHHHHhhcCCchHHHhhhhccCCC-C--CCCee
Q 041959 20 VGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPS----EQPLGEALAEALRLASFNPATSFSSPQNSG-S--PTPIA 92 (172)
Q Consensus 20 ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~----E~~iG~~l~~~~~~~~~~~~~~~~sL~~l~-d--~~~~i 92 (172)
|.|=|.+.++.+...++++...+.|++.+.-.--|.. -..|-++-.+..+.|...+.+=+ .++.+. . .+|++
T Consensus 13 i~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~-~v~~ir~~~~~~plv 91 (256)
T TIGR00262 13 IPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFE-LLKKVRQKHPNIPIG 91 (256)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHH-HHHHHHhcCCCCCEE
Confidence 4455566678899999999999999999998877762 23344443333344554322222 222222 1 24554
Q ss_pred EEcCCCH------HHHhh-----------hC--CccccHHHHHHHHHcCceEE-EeccCC
Q 041959 93 AVSSRAY------KKLSK-----------TN--PIWQQKKLREYRKEKGIHFS-ACSPLG 132 (172)
Q Consensus 93 GvSn~~~------~~~~~-----------~~--~~~~~~~l~~~~~~~gi~v~-a~~pl~ 132 (172)
-.+=+++ +.+-+ ++ |.....++++.|+++|+..+ ..+|-.
T Consensus 92 ~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 92 LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3333333 33222 22 22223678899999998855 555543
No 28
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=64.27 E-value=41 Score=25.63 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=33.3
Q ss_pred eeEEcCCCHHHHhh------------------hC-Cc---cccHHHHHHHHHcCceEEEeccCCC
Q 041959 91 IAAVSSRAYKKLSK------------------TN-PI---WQQKKLREYRKEKGIHFSACSPLGA 133 (172)
Q Consensus 91 ~iGvSn~~~~~~~~------------------~~-~~---~~~~~l~~~~~~~gi~v~a~~pl~~ 133 (172)
++++.||.-+..+. |+ |. .+-++..++|++.||.+.-..++..
T Consensus 106 IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 106 IVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred EEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 38999999988776 11 11 1127899999999999999999987
No 29
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.53 E-value=78 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHHHhCCCeeecCCC
Q 041959 28 PLNEAFKERVLHAIKLGYRHFDTAAA 53 (172)
Q Consensus 28 ~~~~~~~~~v~~a~~~G~~~~DtA~~ 53 (172)
.+.+++.++++..++.|++.+.-+..
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~ 49 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNR 49 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 57899999999999999999996643
No 30
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=57.83 E-value=11 Score=23.13 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCHHHHH
Q 041959 147 EVLKQIAEANGKTVAQLI 164 (172)
Q Consensus 147 ~~l~~ia~~~~~t~aqia 164 (172)
-.+++||+++|+++.+|-
T Consensus 23 i~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 23 IKLKDIAEKLGVSESTIR 40 (60)
T ss_pred ccHHHHHHHHCCCHHHHH
Confidence 378999999999999885
No 31
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=55.34 E-value=53 Score=27.98 Aligned_cols=20 Identities=35% Similarity=0.288 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCceEEEeccC
Q 041959 112 KKLREYRKEKGIHFSACSPL 131 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~~pl 131 (172)
+++.+.|+++||-|++=.-.
T Consensus 222 ~kiae~A~klgi~vIaDEVY 241 (447)
T KOG0259|consen 222 KKIAETAKKLGIMVIADEVY 241 (447)
T ss_pred HHHHHHHHHhCCeEEehhhc
Confidence 68999999999999874333
No 32
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=55.16 E-value=22 Score=30.06 Aligned_cols=37 Identities=19% Similarity=-0.005 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHH
Q 041959 30 NEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAE 66 (172)
Q Consensus 30 ~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~ 66 (172)
.....++++.|++.|++++|||...-....+.+..++
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~ 114 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKK 114 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHH
Confidence 4456689999999999999999776654333333333
No 33
>PF13518 HTH_28: Helix-turn-helix domain
Probab=54.49 E-value=15 Score=20.79 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCHHHHHHHhcc
Q 041959 148 VLKQIAEANGKTVAQLIHNSFF 169 (172)
Q Consensus 148 ~l~~ia~~~~~t~aqial~w~~ 169 (172)
.+.++|.++|++..+| .+|+.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~ 34 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIK 34 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHH
Confidence 5778999999988777 77764
No 34
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=53.20 E-value=1e+02 Score=23.64 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHHHhCCCeeecCC
Q 041959 28 PLNEAFKERVLHAIKLGYRHFDTAA 52 (172)
Q Consensus 28 ~~~~~~~~~v~~a~~~G~~~~DtA~ 52 (172)
.+.+++.++++..++.|++.+.-..
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~ 41 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTL 41 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5789999999999999999998654
No 35
>PLN02444 HMP-P synthase
Probab=52.15 E-value=1.6e+02 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=21.5
Q ss_pred hCCcccc-HHHHHHHHHcCceEEEeccCCCCCCC
Q 041959 105 TNPIWQQ-KKLREYRKEKGIHFSACSPLGAVGTN 137 (172)
Q Consensus 105 ~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~g~~ 137 (172)
-||++.+ +++++.|+++++.+. ||. |+-
T Consensus 356 ENPlYe~FD~ileI~k~YDVtlS----LGD-GLR 384 (642)
T PLN02444 356 ENFAYEHWDDILDICNQYDIALS----IGD-GLR 384 (642)
T ss_pred cCchHHHHHHHHHHHHHhCeeee----ccC-CcC
Confidence 5677765 889999999999985 665 443
No 36
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=51.35 E-value=1.6e+02 Score=25.35 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=25.7
Q ss_pred eeEEcCCCHHHHhh-------hCCcccc-HHHHHHHHHcCceEE
Q 041959 91 IAAVSSRAYKKLSK-------TNPIWQQ-KKLREYRKEKGIHFS 126 (172)
Q Consensus 91 ~iGvSn~~~~~~~~-------~~~~~~~-~~l~~~~~~~gi~v~ 126 (172)
+.|+-+.+-.-+.. -||++.+ +++++.|+++++.+.
T Consensus 180 ~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 180 IMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred ccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeee
Confidence 35555554444433 6788776 899999999999986
No 37
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=51.16 E-value=1.8e+02 Score=25.99 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=30.6
Q ss_pred hCCcccc-HHHHHHHHHcCceEEEeccCCCCCCCCCCCC----------CCChHHHHHHHHHhCC
Q 041959 105 TNPIWQQ-KKLREYRKEKGIHFSACSPLGAVGTNWGHNR----------VMENEVLKQIAEANGK 158 (172)
Q Consensus 105 ~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~----------~~~~~~l~~ia~~~~~ 158 (172)
-||++.. +++++.|+++++.+. ||. |+--|.-. +...-+|.+.|-++|+
T Consensus 351 ENplYe~FD~ileI~k~YDVtlS----LGD-GLRPG~iaDA~D~AQ~~EL~tLGELt~rA~e~gV 410 (607)
T PRK09284 351 ENFLYTHFEEICEIMAAYDVSFS----LGD-GLRPGSIADANDEAQFAELETLGELTKIAWEHDV 410 (607)
T ss_pred cCcHHHHHHHHHHHHHHhCeeee----ccC-CcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566665 889999999999985 665 44322211 1112456666777765
No 38
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=48.45 E-value=41 Score=26.72 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=28.0
Q ss_pred CCCCcCCccccccccc---CC-----hhHHHHHHHH----HHHhCCCeeecC
Q 041959 12 STGKSIPLVGFGTVEY---PL-----NEAFKERVLH----AIKLGYRHFDTA 51 (172)
Q Consensus 12 ~tg~~~p~ig~Gt~~~---~~-----~~~~~~~v~~----a~~~G~~~~DtA 51 (172)
.||+.+|.++|...+- ++ .+++.+++.. |.+.|||.|-.|
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLA 116 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLA 116 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeec
Confidence 3699999999888652 22 3345555554 557899999988
No 39
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=48.22 E-value=3.2 Score=24.90 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHH
Q 041959 114 LREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQIAEANGKTVAQL 163 (172)
Q Consensus 114 l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~ia~~~~~t~aqi 163 (172)
..+++++-||.....+.+.. +....++-+.+..+|+-++++|.++
T Consensus 13 ~~~La~~~gis~~tl~~~~~-----~~~~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 13 QKDLARKTGISRSTLSRILN-----GKPSNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp HHHHHHHHT--HHHHHHHHT-----TT-----HHHHHHHHHHHT--HHHC
T ss_pred HHHHHHHHCcCHHHHHHHHh-----cccccccHHHHHHHHHHcCCCHHHH
Confidence 34556666766666666555 2323567789999999999999886
No 40
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=48.07 E-value=1.2e+02 Score=23.05 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHHHhhcCCchHHHhhhhccCCCCCCCeeEEcCC-CHHHHhh--
Q 041959 28 PLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAEALRLASFNPATSFSSPQNSGSPTPIAAVSSR-AYKKLSK-- 104 (172)
Q Consensus 28 ~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~~~~~~~~~~~~~~~sL~~l~d~~~~iGvSn~-~~~~~~~-- 104 (172)
.+.+++.++++..++.|++.+.-...- +.. -+.|+... +.+.+ . ++|.-+- +.++.+.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a-~~~I~~l~------~~~p~-~---------~vGAGTV~~~e~a~~a~ 77 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT--PNA-LEAIEALR------KEFPD-L---------LVGAGTVLTAEQAEAAI 77 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS--TTH-HHHHHHHH------HHHTT-S---------EEEEES--SHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC--ccH-HHHHHHHH------HHCCC-C---------eeEEEeccCHHHHHHHH
Confidence 478899999999999999999965432 211 12232220 11111 1 1444332 2333333
Q ss_pred -------hCCccccHHHHHHHHHcCceEEE
Q 041959 105 -------TNPIWQQKKLREYRKEKGIHFSA 127 (172)
Q Consensus 105 -------~~~~~~~~~l~~~~~~~gi~v~a 127 (172)
.+|. .+.+++++|+++|+.++.
T Consensus 78 ~aGA~FivSP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 78 AAGAQFIVSPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHT-SEEEESS---HHHHHHHHHHTSEEEE
T ss_pred HcCCCEEECCC-CCHHHHHHHHHcCCcccC
Confidence 4453 456789999999988873
No 41
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=46.98 E-value=31 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHHhCCCeeecCCCCC
Q 041959 28 PLNEAFKERVLHAIKLGYRHFDTAAAYP 55 (172)
Q Consensus 28 ~~~~~~~~~v~~a~~~G~~~~DtA~~Yg 55 (172)
.+.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 3677889999999999999999999985
No 42
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=46.28 E-value=34 Score=29.93 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCceEEE
Q 041959 112 KKLREYRKEKGIHFSA 127 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a 127 (172)
.++++|++.+||.|++
T Consensus 253 ~evV~yarlRGIRVlp 268 (542)
T KOG2499|consen 253 SEVVEYARLRGIRVLP 268 (542)
T ss_pred HHHHHHHHhccceeee
Confidence 6899999999999985
No 43
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=43.54 E-value=1.6e+02 Score=23.27 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=71.5
Q ss_pred cccccccCChhHHHHHHHHH-HHhCCCeeecCCCCCChHHHHHHHHHHhhcCCchHHHhhhhccCCCCCCCeeEEcC---
Q 041959 21 GFGTVEYPLNEAFKERVLHA-IKLGYRHFDTAAAYPSEQPLGEALAEALRLASFNPATSFSSPQNSGSPTPIAAVSS--- 96 (172)
Q Consensus 21 g~Gt~~~~~~~~~~~~v~~a-~~~G~~~~DtA~~Yg~E~~iG~~l~~~~~~~~~~~~~~~~sL~~l~d~~~~iGvSn--- 96 (172)
|||.|++.+.++..+.|.-| +-+|+ +-|....+-+.++...+.|+.. -. -+ .|-|..|+--
T Consensus 13 ~fG~w~mG~De~~l~lvsSANIACGf-------HAGDp~~M~rtV~lA~e~gV~I---GA----HP-gyPDl~gFGRr~m 77 (252)
T COG1540 13 GFGAWRMGDDEALLPLVSSANIACGF-------HAGDPLTMRRTVRLAKENGVAI---GA----HP-GYPDLVGFGRREM 77 (252)
T ss_pred ccCCcccCCcHHHHHHHhhhhHhhcc-------cCCCHHHHHHHHHHHHHcCCee---cc----CC-CCccccccCcccc
Confidence 79999998888888888877 34453 4455666667666665556521 11 00 1112222111
Q ss_pred -CCHHHHhhhCCccccHHHHHHHHHcCceEEEeccCCCCCCCC--CCC----------------C----CCChHHHHHHH
Q 041959 97 -RAYKKLSKTNPIWQQKKLREYRKEKGIHFSACSPLGAVGTNW--GHN----------------R----VMENEVLKQIA 153 (172)
Q Consensus 97 -~~~~~~~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~g~~~--g~~----------------~----~~~~~~l~~ia 153 (172)
.+++++..+ .++|--.|-.+|+.+|..+.-.+|-+. +.. -+. . .+....+.+++
T Consensus 78 ~~~~~e~~a~-~lYQiGAL~a~~~a~G~~~~hVKpHGA--LYN~~a~D~~la~av~~av~~~dp~L~l~~Lags~~~~~a 154 (252)
T COG1540 78 ALSPEELYAQ-VLYQIGALQAFARAQGGVVQHVKPHGA--LYNQAAKDRALADAVAEAVAAFDPSLILMGLAGSELLRAA 154 (252)
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHhcCCeEEEecccHH--HHHHhhcCHHHHHHHHHHHHHhCCCceEEecCcHHHHHHH
Confidence 112221110 123335688999999999999998774 110 000 0 12335777888
Q ss_pred HHhCCCHHHHHH
Q 041959 154 EANGKTVAQLIH 165 (172)
Q Consensus 154 ~~~~~t~aqial 165 (172)
+++|....+-++
T Consensus 155 ~~~GL~~~~EvF 166 (252)
T COG1540 155 KRAGLPVAEEVF 166 (252)
T ss_pred HHcCchhHHHHh
Confidence 888876655443
No 44
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=43.29 E-value=28 Score=18.93 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhCCCHHHHH
Q 041959 146 NEVLKQIAEANGKTVAQLI 164 (172)
Q Consensus 146 ~~~l~~ia~~~~~t~aqia 164 (172)
.+.+..||++|+++..++.
T Consensus 6 gDtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 6 GDTLWSIAKRYGISVDELM 24 (44)
T ss_dssp T--HHHHHHHTTS-HHHHH
T ss_pred CCcHHHHHhhhhhhHhHHH
Confidence 4578899999999998875
No 45
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=43.18 E-value=19 Score=24.97 Aligned_cols=41 Identities=10% Similarity=-0.147 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHHHHhCCCeeecCCCCC-ChHHHHHHHHHHhh
Q 041959 29 LNEAFKERVLHAIKLGYRHFDTAAAYP-SEQPLGEALAEALR 69 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~DtA~~Yg-~E~~iG~~l~~~~~ 69 (172)
+.+.=.++|..+++.|.+.-+.|.-|| ++..+..|++++..
T Consensus 14 s~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~~ 55 (121)
T PRK09413 14 TTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQE 55 (121)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 566677899999999999999999999 99999999999743
No 46
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=41.53 E-value=8.1 Score=23.99 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHHHhCCCeeecCCCCC-ChHHHHHHHHHHh
Q 041959 29 LNEAFKERVLHAIKLGYRHFDTAAAYP-SEQPLGEALAEAL 68 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~DtA~~Yg-~E~~iG~~l~~~~ 68 (172)
+.+.=.++|..++..|.+.-+.|..|| +...|..|++++.
T Consensus 8 s~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 8 SPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp -HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 466777899999999999999999999 9999999999883
No 47
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=40.84 E-value=23 Score=25.17 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCeeecC
Q 041959 34 KERVLHAIKLGYRHFDTA 51 (172)
Q Consensus 34 ~~~v~~a~~~G~~~~DtA 51 (172)
...+...++.|+|+||-=
T Consensus 29 ~~~i~~QL~~GiR~lDlr 46 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLR 46 (146)
T ss_dssp SHHHHHHHHTT--EEEEE
T ss_pred hHhHHHHHhccCceEEEE
Confidence 357889999999999964
No 48
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=40.49 E-value=2.4e+02 Score=24.24 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.0
Q ss_pred hCCcccc-HHHHHHHHHcCceEE
Q 041959 105 TNPIWQQ-KKLREYRKEKGIHFS 126 (172)
Q Consensus 105 ~~~~~~~-~~l~~~~~~~gi~v~ 126 (172)
-||++.+ +++++.|+++++++.
T Consensus 198 ENPlye~fD~lLeI~~~yDVtlS 220 (423)
T TIGR00190 198 ENPLYKNFDYILEIAKEYDVTLS 220 (423)
T ss_pred cCchHHHHHHHHHHHHHhCeeee
Confidence 6688776 789999999999986
No 49
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=39.71 E-value=44 Score=17.74 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCHHHHHHH
Q 041959 147 EVLKQIAEANGKTVAQLIHN 166 (172)
Q Consensus 147 ~~l~~ia~~~~~t~aqial~ 166 (172)
+.+.++|++.|.|..++.-.
T Consensus 12 ~~l~~~a~~~g~s~s~~ir~ 31 (39)
T PF01402_consen 12 ERLDELAKELGRSRSELIRE 31 (39)
T ss_dssp HHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHH
Confidence 67889999999999887543
No 50
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=39.66 E-value=2.4e+02 Score=24.07 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=25.1
Q ss_pred eEEcCCCHHHHhh-------hCCcccc-HHHHHHHHHcCceEE
Q 041959 92 AAVSSRAYKKLSK-------TNPIWQQ-KKLREYRKEKGIHFS 126 (172)
Q Consensus 92 iGvSn~~~~~~~~-------~~~~~~~-~~l~~~~~~~gi~v~ 126 (172)
.|+.+-+-+-+.. -||++.. +++++.|+++++.+.
T Consensus 179 ~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlS 221 (432)
T COG0422 179 TGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLS 221 (432)
T ss_pred eeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeee
Confidence 5555555554444 5577765 899999999999986
No 51
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=37.43 E-value=64 Score=18.70 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCeeecCCCCC-ChHHHHHHHHHH
Q 041959 35 ERVLHAIKLGYRHFDTAAAYP-SEQPLGEALAEA 67 (172)
Q Consensus 35 ~~v~~a~~~G~~~~DtA~~Yg-~E~~iG~~l~~~ 67 (172)
=++...++.|.++-|.|..|| ++..+.+.+...
T Consensus 10 ll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~ 43 (53)
T PF13613_consen 10 LLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEW 43 (53)
T ss_pred HHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHH
Confidence 355666799999999999999 898888887765
No 52
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.88 E-value=1.1e+02 Score=23.58 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=22.1
Q ss_pred CChhHHHHHHHHHHHhCCCeeecC
Q 041959 28 PLNEAFKERVLHAIKLGYRHFDTA 51 (172)
Q Consensus 28 ~~~~~~~~~v~~a~~~G~~~~DtA 51 (172)
.+.+++.++++..++.|++.+.-.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit 47 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT 47 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 578999999999999999999976
No 53
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=36.64 E-value=33 Score=20.08 Aligned_cols=14 Identities=50% Similarity=0.560 Sum_probs=10.6
Q ss_pred HHHHHHhCCCHHHH
Q 041959 150 KQIAEANGKTVAQL 163 (172)
Q Consensus 150 ~~ia~~~~~t~aqi 163 (172)
.++|+..|++++||
T Consensus 32 ~~La~~~gi~~~qV 45 (50)
T PF06971_consen 32 QELAEALGITPAQV 45 (50)
T ss_dssp HHHHHHHTS-HHHH
T ss_pred HHHHHHHCCCHHHh
Confidence 46788889999887
No 54
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.00 E-value=1.7e+02 Score=22.77 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=61.3
Q ss_pred CCcccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHH----HhhcCCchHHHhhhhccC--CC----
Q 041959 17 IPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAE----ALRLASFNPATSFSSPQN--SG---- 86 (172)
Q Consensus 17 ~p~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~----~~~~~~~~~~~~~~sL~~--l~---- 86 (172)
.--+-|-|.++++-++..++++-.-+.|...|+..--|...-.=|-.|.. ....+....++=+ .++. ..
T Consensus 18 naLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~e-mvk~ar~~gvt~ 96 (268)
T KOG4175|consen 18 NALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIE-MVKEARPQGVTC 96 (268)
T ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHH-HHHHhcccCccc
Confidence 34456667777778888899998888899999988777632222222222 2223443233322 2222 11
Q ss_pred ------CCCCe--eEEcCCCHHHHhh-hCCc-------cccHHHHHHHHHcCceEEEe
Q 041959 87 ------SPTPI--AAVSSRAYKKLSK-TNPI-------WQQKKLREYRKEKGIHFSAC 128 (172)
Q Consensus 87 ------d~~~~--iGvSn~~~~~~~~-~~~~-------~~~~~l~~~~~~~gi~v~a~ 128 (172)
-|-|+ .|+.||-...-.. .|-+ .....+..+|++|||.++.-
T Consensus 97 PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpL 154 (268)
T KOG4175|consen 97 PIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPL 154 (268)
T ss_pred ceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEe
Confidence 12232 4555543322222 2222 11256889999999988743
No 55
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=35.67 E-value=36 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCeeecCCC
Q 041959 33 FKERVLHAIKLGYRHFDTAAA 53 (172)
Q Consensus 33 ~~~~v~~a~~~G~~~~DtA~~ 53 (172)
....+..+++.|+|+||.--.
T Consensus 30 q~~~i~~qL~~GvR~~dirv~ 50 (135)
T smart00148 30 SVEGYIQALDHGCRCVELDCW 50 (135)
T ss_pred cHHHHHHHHHhCCCEEEEEcc
Confidence 356888999999999986433
No 56
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=34.96 E-value=22 Score=19.65 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=14.7
Q ss_pred CCChHHHHHHHHHhCCCHHHH
Q 041959 143 VMENEVLKQIAEANGKTVAQL 163 (172)
Q Consensus 143 ~~~~~~l~~ia~~~~~t~aqi 163 (172)
++-.|..+.+|+++|+++.+|
T Consensus 3 i~asP~ar~la~e~gidl~~v 23 (39)
T PF02817_consen 3 IKASPAARKLAAELGIDLSQV 23 (39)
T ss_dssp CCCSHHHHHHHHHTT--GGGS
T ss_pred cccCHHHHHHHHHcCCCcccc
Confidence 345688999999999887654
No 57
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=34.64 E-value=48 Score=22.50 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=17.5
Q ss_pred cHHHHHHHHHcCceEEEeccCCC
Q 041959 111 QKKLREYRKEKGIHFSACSPLGA 133 (172)
Q Consensus 111 ~~~l~~~~~~~gi~v~a~~pl~~ 133 (172)
.++-+.||+++|+....-.|-..
T Consensus 58 kE~Ai~yaer~G~~Y~V~~p~~r 80 (101)
T PF04800_consen 58 KEDAIAYAERNGWDYEVEEPKKR 80 (101)
T ss_dssp HHHHHHHHHHCT-EEEEE-STT-
T ss_pred HHHHHHHHHHcCCeEEEeCCCCC
Confidence 37899999999999998887754
No 58
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=33.26 E-value=52 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcc
Q 041959 147 EVLKQIAEANGKTVAQLIHNSFF 169 (172)
Q Consensus 147 ~~l~~ia~~~~~t~aqial~w~~ 169 (172)
+.|.++|+.+|+|.+|+.=++|.
T Consensus 54 ~~L~~lc~~~GlTQae~IE~LI~ 76 (84)
T PF10723_consen 54 ERLEELCKEQGLTQAEMIERLIK 76 (84)
T ss_dssp HHHHHHHHHS---HHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Confidence 78999999999999999877764
No 59
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=32.83 E-value=57 Score=16.93 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCCeeecC
Q 041959 34 KERVLHAIKLGYRHFDTA 51 (172)
Q Consensus 34 ~~~v~~a~~~G~~~~DtA 51 (172)
.+.++.++++|+..|-|-
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 567899999999998763
No 60
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=32.74 E-value=1.5e+02 Score=19.60 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=34.0
Q ss_pred CccccHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCC
Q 041959 107 PIWQQKKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQIAEANGKT 159 (172)
Q Consensus 107 ~~~~~~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~ia~~~~~t 159 (172)
|.....++...|-++|+.++.=.|++. ..-+-..+.++++++|+.
T Consensus 71 p~~~h~~~~~~~l~~g~~v~~EKP~~~--------~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAGKHVLVEKPLAL--------TLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp SGGGHHHHHHHHHHTTSEEEEESSSSS--------SHHHHHHHHHHHHHHTSC
T ss_pred CCcchHHHHHHHHHcCCEEEEEcCCcC--------CHHHHHHHHHHHHHhCCE
Confidence 444456788889999999999999997 223446788888888763
No 61
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=32.31 E-value=74 Score=18.29 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHHhCCCHHHHHHHh
Q 041959 143 VMENEVLKQIAEANGKTVAQLIHNS 167 (172)
Q Consensus 143 ~~~~~~l~~ia~~~~~t~aqial~w 167 (172)
..+.+....||.+.|++..||-..|
T Consensus 24 ~p~~~~~~~la~~l~l~~~~V~~WF 48 (57)
T PF00046_consen 24 YPSKEEREELAKELGLTERQVKNWF 48 (57)
T ss_dssp SCHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred cccccccccccccccccccccccCH
Confidence 3456889999999999999985543
No 62
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=32.04 E-value=38 Score=17.96 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCHHHHH
Q 041959 147 EVLKQIAEANGKTVAQLI 164 (172)
Q Consensus 147 ~~l~~ia~~~~~t~aqia 164 (172)
+.+..||++|++++.+++
T Consensus 5 dtl~~IA~~~~~~~~~l~ 22 (44)
T TIGR02899 5 DTLWKIAKKYGVDFDELI 22 (44)
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 467789999999887764
No 63
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=31.97 E-value=73 Score=25.54 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCeeecCCCCCChHHHHH-HHHHH
Q 041959 34 KERVLHAIKLGYRHFDTAAAYPSEQPLGE-ALAEA 67 (172)
Q Consensus 34 ~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~-~l~~~ 67 (172)
...+.+|+++|+..+-||+.|+=|.++.. .++..
T Consensus 233 ~~A~~ta~~~GVkli~TaHG~~iedl~krp~lkdl 267 (308)
T COG3854 233 ALAILTALHAGVKLITTAHGNGIEDLIKRPTLKDL 267 (308)
T ss_pred HHHHHHHHhcCcEEEEeeccccHHHhhcChhHHHH
Confidence 35678999999999999999995555432 34443
No 64
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.58 E-value=67 Score=24.91 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=29.8
Q ss_pred cccccccccCChhHHHHHHHHHH-HhCCCeeecCCCC
Q 041959 19 LVGFGTVEYPLNEAFKERVLHAI-KLGYRHFDTAAAY 54 (172)
Q Consensus 19 ~ig~Gt~~~~~~~~~~~~v~~a~-~~G~~~~DtA~~Y 54 (172)
-+|+||..+...+.+.+-+++++ +.|+.-|....+-
T Consensus 67 ~v~lgtlpmn~~e~avee~~rcvk~lg~~g~eigshv 103 (297)
T KOG4245|consen 67 FVGLGTLPMNAPELAVEEMERCVKELGFKGFEIGSHV 103 (297)
T ss_pred ccccCccCCcCHHHHHHHHHHHHHHcCCCceeecccc
Confidence 47999988778888999999999 7899999865443
No 65
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=30.89 E-value=63 Score=26.40 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhC---CCeeecCCCCC---C-hHHHHHHHHHH
Q 041959 31 EAFKERVLHAIKLG---YRHFDTAAAYP---S-EQPLGEALAEA 67 (172)
Q Consensus 31 ~~~~~~v~~a~~~G---~~~~DtA~~Yg---~-E~~iG~~l~~~ 67 (172)
..+.++++.|-+.| ++||||+-.|- . |+.-+++|.+.
T Consensus 137 RKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~n 180 (317)
T COG0825 137 RKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARN 180 (317)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHH
Confidence 46888899998887 57899999995 2 56667777654
No 66
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=30.48 E-value=42 Score=26.57 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=16.9
Q ss_pred cccccccccCChhHHHHHHHHHHHhCCCe
Q 041959 19 LVGFGTVEYPLNEAFKERVLHAIKLGYRH 47 (172)
Q Consensus 19 ~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~ 47 (172)
++|+||+.+.+.+...+-+..|-++||..
T Consensus 42 K~g~Gt~~l~~~~~l~eki~l~~~~gV~v 70 (244)
T PF02679_consen 42 KFGWGTSALYPEEILKEKIDLAHSHGVYV 70 (244)
T ss_dssp EE-TTGGGGSTCHHHHHHHHHHHCTT-EE
T ss_pred EecCceeeecCHHHHHHHHHHHHHcCCeE
Confidence 67888888766555555555555555443
No 67
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=30.30 E-value=53 Score=27.39 Aligned_cols=48 Identities=21% Similarity=0.152 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCC--CCCCC--ChHHHHHHHHHhCCC
Q 041959 112 KKLREYRKEKGIHFSACSPLGAVGTNWG--HNRVM--ENEVLKQIAEANGKT 159 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~~pl~~~g~~~g--~~~~~--~~~~l~~ia~~~~~t 159 (172)
++.+..++++||.++.|.|.-.+++... ...+. -.+.++++++++++.
T Consensus 255 e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~~~~~w~~~i~~l~~~~~~~ 306 (345)
T PF07611_consen 255 EKFLKLAKENGIPVVLWWPKVSPPYEKLYKELKVYESWWPIIKKLAKEYGIP 306 (345)
T ss_pred HHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhchhhHHHHHHHHHHhcCCce
Confidence 6899999999999999999987322110 00010 137788888888764
No 68
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=30.14 E-value=1e+02 Score=17.52 Aligned_cols=25 Identities=20% Similarity=0.017 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHhCCCHHHHHHHh
Q 041959 143 VMENEVLKQIAEANGKTVAQLIHNS 167 (172)
Q Consensus 143 ~~~~~~l~~ia~~~~~t~aqial~w 167 (172)
..+...+..||+..|++..||-..|
T Consensus 24 ~P~~~~~~~la~~~~l~~~qV~~WF 48 (59)
T cd00086 24 YPSREEREELAKELGLTERQVKIWF 48 (59)
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 3457889999999999999987654
No 69
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=29.68 E-value=54 Score=25.40 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=17.4
Q ss_pred CCcccccccccCChhHHHHHHHHHHHhCCCeeecCC
Q 041959 17 IPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAA 52 (172)
Q Consensus 17 ~p~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~ 52 (172)
.|+.-+|+.. ...+..++..|++.||++.
T Consensus 114 ~pr~l~G~~~-------P~~i~~~v~~GvD~fDs~~ 142 (238)
T PF01702_consen 114 KPRYLLGVGT-------PEEILEAVYLGVDLFDSSY 142 (238)
T ss_dssp S-EEETTB-S-------HHHHHHHHHTT--EEEESH
T ss_pred cceeccCCCC-------HHHHHHHHHcCCcEEcchH
Confidence 4555555554 3566777899999999873
No 70
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=29.50 E-value=58 Score=26.15 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=20.8
Q ss_pred hCCccccHHHHHHHHHcCceEEEecc
Q 041959 105 TNPIWQQKKLREYRKEKGIHFSACSP 130 (172)
Q Consensus 105 ~~~~~~~~~l~~~~~~~gi~v~a~~p 130 (172)
.||+.+|+++.....+.||.|.||.-
T Consensus 75 sNplSTQDdvaAAL~~~Gi~V~A~~g 100 (268)
T PF05221_consen 75 SNPLSTQDDVAAALAEEGIPVFAWKG 100 (268)
T ss_dssp SSTTT--HHHHHHHHHTTEEEEE-TT
T ss_pred CCCcccchHHHHHhccCCceEEEeCC
Confidence 68999999999999999999999853
No 71
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=29.22 E-value=68 Score=20.05 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=15.2
Q ss_pred HHHHHHHHHhCCCHHHHHHH
Q 041959 147 EVLKQIAEANGKTVAQLIHN 166 (172)
Q Consensus 147 ~~l~~ia~~~~~t~aqial~ 166 (172)
....+.|++||+++.+|.+.
T Consensus 23 ~ha~raa~~ygVd~r~il~e 42 (66)
T PF07836_consen 23 LHAERAAERYGVDPRDILVE 42 (66)
T ss_dssp HHHHHHHHHHT--HHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHH
Confidence 46778999999999999875
No 72
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=29.15 E-value=84 Score=24.81 Aligned_cols=37 Identities=32% Similarity=0.378 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHHH
Q 041959 30 NEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAEA 67 (172)
Q Consensus 30 ~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~~ 67 (172)
.|-.......|.+.|+++|| +-+|.+|+..=+.+.+.
T Consensus 196 Gd~~~~~~~~a~e~gi~~i~-~gH~~tE~~g~~~l~~~ 232 (250)
T COG0327 196 GDLSHHTAHDARELGLSVID-AGHYATERPGLKALAEL 232 (250)
T ss_pred CCCcHHHHHHHHHCCCeEEe-cCchHHHHHHHHHHHHH
Confidence 45567889999999999999 45777777655555544
No 73
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=29.03 E-value=26 Score=27.04 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=12.3
Q ss_pred hCCCeeecCCCCC
Q 041959 43 LGYRHFDTAAAYP 55 (172)
Q Consensus 43 ~G~~~~DtA~~Yg 55 (172)
.|.++|+||+.||
T Consensus 199 ~G~ryF~c~p~yG 211 (234)
T KOG3206|consen 199 NGKRYFECAPKYG 211 (234)
T ss_pred cceEeeecCCccC
Confidence 5999999999999
No 74
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=28.93 E-value=73 Score=19.05 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHhCCCHHHHHH
Q 041959 145 ENEVLKQIAEANGKTVAQLIH 165 (172)
Q Consensus 145 ~~~~l~~ia~~~~~t~aqial 165 (172)
+.-.+.-+|+++|+|+.|+.-
T Consensus 19 e~~ev~ywa~~~gvt~~~L~~ 39 (57)
T PF12244_consen 19 EPYEVRYWAKRFGVTEEQLRE 39 (57)
T ss_pred CHHHHHHHHHHHCcCHHHHHH
Confidence 456888999999999998753
No 75
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=28.20 E-value=40 Score=20.39 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCceE
Q 041959 112 KKLREYRKEKGIHF 125 (172)
Q Consensus 112 ~~l~~~~~~~gi~v 125 (172)
.++++||+++|=-+
T Consensus 30 ~eV~~YC~~~GWIi 43 (57)
T PF08727_consen 30 PEVREYCEEQGWII 43 (57)
T ss_dssp HHHHHHHHHHT--T
T ss_pred HHHHHHHHHCCccc
Confidence 68999999988544
No 76
>PRK06361 hypothetical protein; Provisional
Probab=28.08 E-value=87 Score=23.57 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCeeecCCCCC
Q 041959 32 AFKERVLHAIKLGYRHFDTAAAYP 55 (172)
Q Consensus 32 ~~~~~v~~a~~~G~~~~DtA~~Yg 55 (172)
...+++..|.+.|+..|=-+++..
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~ 34 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHAD 34 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCC
Confidence 357899999999999987777654
No 77
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=27.82 E-value=74 Score=19.88 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCHHHHHHH
Q 041959 147 EVLKQIAEANGKTVAQLIHN 166 (172)
Q Consensus 147 ~~l~~ia~~~~~t~aqial~ 166 (172)
..|++||+..|+|.++++-.
T Consensus 24 ~~L~eiA~~~g~s~~~li~~ 43 (67)
T PF13467_consen 24 DALEEIAAREGLSLNALIAE 43 (67)
T ss_dssp HHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 68999999999999988754
No 78
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=27.50 E-value=67 Score=25.80 Aligned_cols=25 Identities=8% Similarity=-0.142 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHHhCCCeeecCCC
Q 041959 29 LNEAFKERVLHAIKLGYRHFDTAAA 53 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~DtA~~ 53 (172)
+.-.+..-...|+++|+++||++-.
T Consensus 213 ~~Gla~AN~laA~~aG~~~vd~sv~ 237 (279)
T cd07947 213 DFYKAVANAVAAWLYGASWVNCTLL 237 (279)
T ss_pred CCChHHHHHHHHHHhCCCEEEEecc
Confidence 5566778888999999999999843
No 79
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.40 E-value=59 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHHhCCCeeecC
Q 041959 29 LNEAFKERVLHAIKLGYRHFDTA 51 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~DtA 51 (172)
+.-.+..-...|+++|+++||++
T Consensus 191 d~Gla~An~laA~~aGa~~id~t 213 (237)
T PF00682_consen 191 DLGLAVANALAALEAGADRIDGT 213 (237)
T ss_dssp TTS-HHHHHHHHHHTT-SEEEEB
T ss_pred CccchhHHHHHHHHcCCCEEEcc
Confidence 44556777889999999999998
No 80
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=27.29 E-value=1.7e+02 Score=20.20 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCCCh----HHHHHHHHHhCCCHHHHHHH
Q 041959 112 KKLREYRKEKGIHFSACSPLGAVGTNWGHNRVMEN----EVLKQIAEANGKTVAQLIHN 166 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~----~~l~~ia~~~~~t~aqial~ 166 (172)
++.+++|++.|+... .|+.+ +-.+.-+ +.+...|.+-|+|..|++..
T Consensus 52 ~~yle~C~~~g~EP~--k~~SG------kf~~Ri~p~lH~~a~~aAa~qgiSLN~~v~~ 102 (111)
T COG4226 52 DDYLEFCKERGIEPR--KPYSG------KFNLRIDPELHEAAALAAAAQGISLNTWVEE 102 (111)
T ss_pred HHHHHHHHHcCCCCc--cccCc------eeeEecCHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 578999999999765 55543 2222223 34444566778999887754
No 81
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=26.89 E-value=75 Score=22.59 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHHhCCCeeecCCCCC
Q 041959 28 PLNEAFKERVLHAIKLGYRHFDTAAAYP 55 (172)
Q Consensus 28 ~~~~~~~~~v~~a~~~G~~~~DtA~~Yg 55 (172)
.+.+++.+++.+|++.|.+-.+-+..||
T Consensus 80 ~s~eevd~~v~ka~eaGGk~~~~~~d~g 107 (133)
T COG3607 80 GSREEVDELVDKALEAGGKPANEPQDEG 107 (133)
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 4689999999999999998876665554
No 82
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=3e+02 Score=23.06 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=28.9
Q ss_pred cccccccc-CChhHHHHHHHHHHHhCCCeeecCCCCCCh
Q 041959 20 VGFGTVEY-PLNEAFKERVLHAIKLGYRHFDTAAAYPSE 57 (172)
Q Consensus 20 ig~Gt~~~-~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E 57 (172)
+||-.+.. .+.++-.+.++.|.+.|+..+=|+=.+..+
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~ 42 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFTSLLIPEE 42 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceeeecccCCc
Confidence 44444332 456778899999999999999999998843
No 83
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=25.83 E-value=1.9e+02 Score=21.10 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCC--CCCC--ChHHHHHHHHHhCCCH
Q 041959 112 KKLREYRKEKGIHFSACSPLGAVGTNWGH--NRVM--ENEVLKQIAEANGKTV 160 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~~pl~~~g~~~g~--~~~~--~~~~l~~ia~~~~~t~ 160 (172)
.++++.++++|+.++-.+|........+. ...+ -.+.++++|+++++..
T Consensus 97 ~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 97 RRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 57889999999999999887542221111 0011 1478999999998753
No 84
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=25.68 E-value=1e+02 Score=24.08 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=49.8
Q ss_pred HHHhhhhccCCCCCCCeeE----EcCCCHHHHhh---------hCCcccc--HHHHHHHHHcCceEEEeccCCCCCCCCC
Q 041959 75 PATSFSSPQNSGSPTPIAA----VSSRAYKKLSK---------TNPIWQQ--KKLREYRKEKGIHFSACSPLGAVGTNWG 139 (172)
Q Consensus 75 ~~~~~~sL~~l~d~~~~iG----vSn~~~~~~~~---------~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~g~~~g 139 (172)
+.+.+ .|++++ ++.|. .|.|....++. +.|++.. .+++...-+.|..++.-+.-+. |+...
T Consensus 76 e~L~~-~l~~l~--~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~-gL~~~ 151 (223)
T COG2102 76 EELKE-ALRRLK--VDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAE-GLDES 151 (223)
T ss_pred HHHHH-HHHhCc--ccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEecc-CCChH
Confidence 55666 666665 33322 24444444444 7788864 5666666677776666666555 55410
Q ss_pred -CCCCCC---hHHHHHHHHHhCCCHH
Q 041959 140 -HNRVME---NEVLKQIAEANGKTVA 161 (172)
Q Consensus 140 -~~~~~~---~~~l~~ia~~~~~t~a 161 (172)
.++.++ .+.++.+.++||+.|+
T Consensus 152 ~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 152 WLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred HhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 123343 3788999999999874
No 85
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.67 E-value=1.7e+02 Score=20.78 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=51.4
Q ss_pred CcccccccccCChhHHHHHHHHHH-HhCCCeeecCCCCCChHHHHHHHHHHhhcCCchHHHhhhhccCCCCCCCeeEEcC
Q 041959 18 PLVGFGTVEYPLNEAFKERVLHAI-KLGYRHFDTAAAYPSEQPLGEALAEALRLASFNPATSFSSPQNSGSPTPIAAVSS 96 (172)
Q Consensus 18 p~ig~Gt~~~~~~~~~~~~v~~a~-~~G~~~~DtA~~Yg~E~~iG~~l~~~~~~~~~~~~~~~~sL~~l~d~~~~iGvSn 96 (172)
|.+-+|+..-.-.+....++..++ ++||..+|+...=..|+.+-.+.+. ..++||+|.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~---------------------~adiVglS~ 60 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET---------------------KADAILVSS 60 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc---------------------CCCEEEEec
Confidence 345566666344667778888888 4699999977554455554443322 246688888
Q ss_pred CCHHHHhhhCCccccHHHHHHHHHcCce
Q 041959 97 RAYKKLSKTNPIWQQKKLREYRKEKGIH 124 (172)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~gi~ 124 (172)
.....+ ..-+++++.++++|+.
T Consensus 61 l~~~~~------~~~~~~~~~l~~~gl~ 82 (134)
T TIGR01501 61 LYGHGE------IDCKGLRQKCDEAGLE 82 (134)
T ss_pred ccccCH------HHHHHHHHHHHHCCCC
Confidence 654331 1235788899999874
No 86
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=25.10 E-value=4.4e+02 Score=22.63 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=56.4
Q ss_pred CcCCcccccccccCChhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHHHhhcCCchHHHhhhhccCCC---CCCCe
Q 041959 15 KSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAEALRLASFNPATSFSSPQNSG---SPTPI 91 (172)
Q Consensus 15 ~~~p~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~~~~~~~~~~~~~~~sL~~l~---d~~~~ 91 (172)
..=|-+|||...| +....+++..|-+.|+. -.++...++...+... .-++. -++.++ .-+-+
T Consensus 251 fl~aG~GyGGsCf--PKD~~AL~~~a~~~~~~----------~~ll~avv~vN~~qk~--~~~~~-i~~~~~l~Gk~iav 315 (414)
T COG1004 251 FLNAGFGYGGSCF--PKDTKALIANAEELGYD----------PNLLEAVVEVNERRKD--KLAEK-ILNHLGLKGKTIAV 315 (414)
T ss_pred hCCCCCCCCCcCC--cHhHHHHHHHHHhcCCc----------hHHHHHHHHHHHHHHH--HHHHH-HHHhcCCCCcEEEE
Confidence 3347789998886 57778899999888862 2344444433211111 22333 332322 22334
Q ss_pred eEEcCCCHHHHhhhCCccc---cHHHHHHHHHcCceEEEeccCCC
Q 041959 92 AAVSSRAYKKLSKTNPIWQ---QKKLREYRKEKGIHFSACSPLGA 133 (172)
Q Consensus 92 iGvSn~~~~~~~~~~~~~~---~~~l~~~~~~~gi~v~a~~pl~~ 133 (172)
+|++==.-. .-.+ ...+++..+++|..|++|-|.+.
T Consensus 316 lgLafKpnT------DD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~ 354 (414)
T COG1004 316 LGLAFKPNT------DDMRESPALDIIKRLQEKGAEVIAYDPVAM 354 (414)
T ss_pred EEEeecCCC------ccchhchHHHHHHHHHHCCCEEEEECchhh
Confidence 565421000 0111 15789999999999999999986
No 87
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=24.94 E-value=95 Score=18.69 Aligned_cols=20 Identities=5% Similarity=0.006 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCHHHHHHHh
Q 041959 148 VLKQIAEANGKTVAQLIHNS 167 (172)
Q Consensus 148 ~l~~ia~~~~~t~aqial~w 167 (172)
-+..+|+++++|+.++.-.|
T Consensus 7 ~Ie~~A~~~~~s~~ea~~~~ 26 (62)
T PF12668_consen 7 CIEEFAKKLNISGEEAYNYF 26 (62)
T ss_pred HHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999886554
No 88
>PF14502 HTH_41: Helix-turn-helix domain
Probab=24.76 E-value=74 Score=18.56 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCH--HHHHHHhcccC
Q 041959 147 EVLKQIAEANGKTV--AQLIHNSFFLS 171 (172)
Q Consensus 147 ~~l~~ia~~~~~t~--aqial~w~~~~ 171 (172)
+.+.+++++++++. .|-||+++...
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~ 33 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEEN 33 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHC
Confidence 46788999998754 78899887653
No 89
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.48 E-value=74 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=22.2
Q ss_pred ccccccccCChhHHHHHHHHHHHhCCCeeecCC
Q 041959 20 VGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAA 52 (172)
Q Consensus 20 ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~ 52 (172)
|++-+.. +.-.+..-...|+++|++++|++-
T Consensus 188 l~~H~Hn--~~GlA~AN~laAi~aGa~~vd~s~ 218 (263)
T cd07943 188 VGFHGHN--NLGLAVANSLAAVEAGATRIDGSL 218 (263)
T ss_pred EEEEecC--CcchHHHHHHHHHHhCCCEEEeec
Confidence 4444433 455677778888999999999883
No 90
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=24.43 E-value=64 Score=26.76 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCeeecCC
Q 041959 32 AFKERVLHAIKLGYRHFDTAA 52 (172)
Q Consensus 32 ~~~~~v~~a~~~G~~~~DtA~ 52 (172)
....+++.|++.|++++|++.
T Consensus 79 ~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GHHHHHHHHHHHT-EEEESS-
T ss_pred hhHHHHHHHHHhCCCeeccch
Confidence 667899999999999999664
No 91
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=24.39 E-value=49 Score=21.77 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=14.1
Q ss_pred cHHHHHHHHHcCceEE
Q 041959 111 QKKLREYRKEKGIHFS 126 (172)
Q Consensus 111 ~~~l~~~~~~~gi~v~ 126 (172)
..+++.||+++||.+.
T Consensus 17 ~~eLlkyskqy~i~it 32 (85)
T PF11116_consen 17 AKELLKYSKQYNISIT 32 (85)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 3789999999999886
No 92
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.81 E-value=49 Score=25.64 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=17.4
Q ss_pred CeeecCCCCCChHHHHHHHHHH
Q 041959 46 RHFDTAAAYPSEQPLGEALAEA 67 (172)
Q Consensus 46 ~~~DtA~~Yg~E~~iG~~l~~~ 67 (172)
-|+|||+.||.-+.|=.+|+..
T Consensus 50 EFWdTapAf~GrKEIWDaL~aa 71 (231)
T KOG0013|consen 50 EFWDTAPAFGGRKEIWDALHAA 71 (231)
T ss_pred hhhhcccccCCcHHHHHHHHHH
Confidence 4799999999777777777654
No 93
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.72 E-value=4e+02 Score=21.56 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=59.1
Q ss_pred CChhHHHHHHHHHHHhCCCeeecCCCCC-----ChHHHHHHHHHHhhcCCchHHHhhhhccCCCCCCCe-eEEcCCCHHH
Q 041959 28 PLNEAFKERVLHAIKLGYRHFDTAAAYP-----SEQPLGEALAEALRLASFNPATSFSSPQNSGSPTPI-AAVSSRAYKK 101 (172)
Q Consensus 28 ~~~~~~~~~v~~a~~~G~~~~DtA~~Yg-----~E~~iG~~l~~~~~~~~~~~~~~~~sL~~l~d~~~~-iGvSn~~~~~ 101 (172)
.|.+...+.+++.++.|++-+=..-..| +.+.--+.++. .++. .++.+|+ .|++..+..+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~---------~~~~-----~~grvpvi~Gv~~~~t~~ 91 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVAT---------VVET-----VAGRVPVFVGATTLNTRD 91 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHH---------HHHH-----hCCCCCEEEEeccCCHHH
Confidence 3677889999999999999876544443 22221111111 1111 1223454 7888766665
Q ss_pred Hhh---------------hCCcc---ccHHHHHH----HHHc-CceEEEec-cCCCCCCCCCCCCCCChHHHHHHH
Q 041959 102 LSK---------------TNPIW---QQKKLREY----RKEK-GIHFSACS-PLGAVGTNWGHNRVMENEVLKQIA 153 (172)
Q Consensus 102 ~~~---------------~~~~~---~~~~l~~~----~~~~-gi~v~a~~-pl~~~g~~~g~~~~~~~~~l~~ia 153 (172)
..+ ..|++ .++++++| |+.- ++.++.|. |-.. | ..++.+.+.+++
T Consensus 92 ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~t-g------~~l~~~~l~~L~ 160 (309)
T cd00952 92 TIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAF-K------FDFPRAAWAELA 160 (309)
T ss_pred HHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhc-C------CCCCHHHHHHHh
Confidence 544 22322 24566665 4556 69999994 4333 2 335566777776
No 94
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=23.70 E-value=2.7e+02 Score=23.80 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=36.6
Q ss_pred CCcccccccccC-----------ChhHHHHHHHHHHHhCCCeeecCCCCC----ChHHHHHHHHHH
Q 041959 17 IPLVGFGTVEYP-----------LNEAFKERVLHAIKLGYRHFDTAAAYP----SEQPLGEALAEA 67 (172)
Q Consensus 17 ~p~ig~Gt~~~~-----------~~~~~~~~v~~a~~~G~~~~DtA~~Yg----~E~~iG~~l~~~ 67 (172)
+-+|++|...|. +.+++.+.+..+.+.|+.-+-.-=.|| +.+.+-+-++..
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a 213 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQA 213 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHH
Confidence 348999988772 457888999999999998866667888 444455445443
No 95
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=23.60 E-value=75 Score=25.66 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCceEEEe
Q 041959 112 KKLREYRKEKGIHFSAC 128 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~ 128 (172)
++++++|+++||.|+.=
T Consensus 75 ~elv~yA~~rgI~viPE 91 (303)
T cd02742 75 KDIIEYAAARGIEVIPE 91 (303)
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 68999999999999864
No 96
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.46 E-value=82 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=22.3
Q ss_pred CccccHHHHHHHHHcCceEEEeccCCC
Q 041959 107 PIWQQKKLREYRKEKGIHFSACSPLGA 133 (172)
Q Consensus 107 ~~~~~~~l~~~~~~~gi~v~a~~pl~~ 133 (172)
++.-++-+.+..+++|..++.|+-|.+
T Consensus 54 vW~lRdyL~~~i~~~G~eP~PfS~L~g 80 (89)
T PF10078_consen 54 VWILRDYLNDKIKEQGKEPVPFSALKG 80 (89)
T ss_pred chHHHHHHHHHHHHcCCCCCCeeeeCC
Confidence 344456788889999999999999986
No 97
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=23.44 E-value=86 Score=17.44 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=8.8
Q ss_pred HHHHHHHHhCCCHHH
Q 041959 148 VLKQIAEANGKTVAQ 162 (172)
Q Consensus 148 ~l~~ia~~~~~t~aq 162 (172)
.+.+||+.+|+|.+.
T Consensus 23 si~~IA~~~gvsr~T 37 (45)
T PF02796_consen 23 SIAEIAKQFGVSRST 37 (45)
T ss_dssp -HHHHHHHTTS-HHH
T ss_pred CHHHHHHHHCcCHHH
Confidence 456677777776654
No 98
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=23.39 E-value=5.7e+02 Score=23.24 Aligned_cols=97 Identities=11% Similarity=-0.048 Sum_probs=52.4
Q ss_pred ChhHHHHHHHHHHHhCCCeeecCCCCCCh-HHHHHHHHHHhhcCCch-----------------HHHhhhhccCCCCCCC
Q 041959 29 LNEAFKERVLHAIKLGYRHFDTAAAYPSE-QPLGEALAEALRLASFN-----------------PATSFSSPQNSGSPTP 90 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~DtA~~Yg~E-~~iG~~l~~~~~~~~~~-----------------~~~~~~sL~~l~d~~~ 90 (172)
|-+.+.+-+....++|...+-.|-.--.+ +.+...-++..++|... +.++. -.-++|.+.+
T Consensus 39 D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~v~k-iRINPGN~~~ 117 (611)
T PRK02048 39 DTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQYAEK-VRINPGNYVD 117 (611)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHhhCC-EEECCCcCCC
Confidence 56778888888899999988876332211 22222222223334321 33444 3334443332
Q ss_pred ---eeEEcCCCHHHHhh-hCCcc-ccHHHHHHHHHcCceEE
Q 041959 91 ---IAAVSSRAYKKLSK-TNPIW-QQKKLREYRKEKGIHFS 126 (172)
Q Consensus 91 ---~iGvSn~~~~~~~~-~~~~~-~~~~l~~~~~~~gi~v~ 126 (172)
-+..-.|+.++..+ ..... .-..+++.|+++|+.+=
T Consensus 118 ~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iR 158 (611)
T PRK02048 118 PGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIR 158 (611)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 14444555555443 11111 12579999999999885
No 99
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.12 E-value=76 Score=26.07 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCceEEEe
Q 041959 112 KKLREYRKEKGIHFSAC 128 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~ 128 (172)
+++++||+++||.|+.=
T Consensus 78 ~elv~yA~~rgI~vIPE 94 (329)
T cd06568 78 KDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 68999999999999853
No 100
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.78 E-value=84 Score=24.78 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHHHHhCCCeeecCC
Q 041959 29 LNEAFKERVLHAIKLGYRHFDTAA 52 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~DtA~ 52 (172)
+...+..-...|+++|++.||++-
T Consensus 199 ~~GlA~An~laAi~aG~~~iD~s~ 222 (268)
T cd07940 199 DLGLAVANSLAAVEAGARQVECTI 222 (268)
T ss_pred CcchHHHHHHHHHHhCCCEEEEEe
Confidence 455677778888999999999873
No 101
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.54 E-value=4e+02 Score=21.25 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=18.9
Q ss_pred ChhHHHHHHHHHHHhCCCeeec
Q 041959 29 LNEAFKERVLHAIKLGYRHFDT 50 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~Dt 50 (172)
|.+...+.+++.++.|++-+=.
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v 45 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFA 45 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE
Confidence 6788999999999999998653
No 102
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=22.49 E-value=87 Score=25.52 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCceEEEeccCC
Q 041959 112 KKLREYRKEKGIHFSACSPLG 132 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~~pl~ 132 (172)
..+++.||++||.|.||-.++
T Consensus 73 ~~~I~eaHkrGlevHAW~~~~ 93 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAWFRVG 93 (311)
T ss_pred HHHHHHHHHcCCEEEEEEEee
Confidence 579999999999999997544
No 103
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=22.41 E-value=1.1e+02 Score=18.18 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhCCCHHHH
Q 041959 146 NEVLKQIAEANGKTVAQL 163 (172)
Q Consensus 146 ~~~l~~ia~~~~~t~aqi 163 (172)
++.+..+|+.||+++.++
T Consensus 3 ~~I~~~Va~~~~i~~~~i 20 (60)
T smart00760 3 EEIIEAVAEYFGVKPEDL 20 (60)
T ss_pred HHHHHHHHHHhCCCHHHH
Confidence 346677888888887775
No 104
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=22.39 E-value=1.3e+02 Score=16.65 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCHHHHHHHh
Q 041959 148 VLKQIAEANGKTVAQLIHNS 167 (172)
Q Consensus 148 ~l~~ia~~~~~t~aqial~w 167 (172)
...++|++.|+|++.+.=|+
T Consensus 19 s~~~la~~lglS~~~v~~Ri 38 (42)
T PF13404_consen 19 SYAELAEELGLSESTVRRRI 38 (42)
T ss_dssp -HHHHHHHHTS-HHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999887654
No 105
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=22.22 E-value=1.5e+02 Score=16.24 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHhCCCHHHHHHHh
Q 041959 142 RVMENEVLKQIAEANGKTVAQLIHNS 167 (172)
Q Consensus 142 ~~~~~~~l~~ia~~~~~t~aqial~w 167 (172)
+..+.++..++|.+.|.|..||.--|
T Consensus 9 PYPs~~ek~~L~~~tgls~~Qi~~WF 34 (40)
T PF05920_consen 9 PYPSKEEKEELAKQTGLSRKQISNWF 34 (40)
T ss_dssp GS--HHHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34466788899999999999997644
No 106
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=22.21 E-value=91 Score=25.31 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCccccccccc-------------CChhHHHHHHHHHHHhCCCe
Q 041959 17 IPLVGFGTVEY-------------PLNEAFKERVLHAIKLGYRH 47 (172)
Q Consensus 17 ~p~ig~Gt~~~-------------~~~~~~~~~v~~a~~~G~~~ 47 (172)
+|.-||||--+ .|.....=+|..|+++||..
T Consensus 9 iPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~ 52 (291)
T COG1210 9 IPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEE 52 (291)
T ss_pred EEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCE
Confidence 68889998554 24555677899999999975
No 107
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=22.13 E-value=93 Score=24.54 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=21.6
Q ss_pred cccccccccCChhHHHHHHHHHHHhCCCee
Q 041959 19 LVGFGTVEYPLNEAFKERVLHAIKLGYRHF 48 (172)
Q Consensus 19 ~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~ 48 (172)
++|+||+.+.+.+...+.+..|-++||..+
T Consensus 29 Kfg~Gt~~l~~~~~l~eki~la~~~~V~v~ 58 (237)
T TIGR03849 29 KFGWGTSALIDRDIVKEKIEMYKDYGIKVY 58 (237)
T ss_pred EecCceEeeccHHHHHHHHHHHHHcCCeEe
Confidence 567888877666777777777777776543
No 108
>PLN02494 adenosylhomocysteinase
Probab=22.13 E-value=1.5e+02 Score=25.89 Aligned_cols=28 Identities=11% Similarity=-0.135 Sum_probs=25.1
Q ss_pred hCCccccHHHHHHHHHcCceEEEeccCC
Q 041959 105 TNPIWQQKKLREYRKEKGIHFSACSPLG 132 (172)
Q Consensus 105 ~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 132 (172)
.||+.+|++......+.||.|.||..-.
T Consensus 78 ~Np~sTqd~vaaal~~~gi~vfa~~g~~ 105 (477)
T PLN02494 78 CNIFSTQDHAAAAIARDSAAVFAWKGET 105 (477)
T ss_pred CCCccchHHHHHHHHhCCceEEEecCCC
Confidence 7899999999999999999999997654
No 109
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=21.74 E-value=1e+02 Score=26.41 Aligned_cols=27 Identities=19% Similarity=-0.011 Sum_probs=23.7
Q ss_pred hCCccccHHHHHHHHHcCceEEEeccC
Q 041959 105 TNPIWQQKKLREYRKEKGIHFSACSPL 131 (172)
Q Consensus 105 ~~~~~~~~~l~~~~~~~gi~v~a~~pl 131 (172)
.||+.+|+++..+.++.||.|++|.--
T Consensus 68 ~np~stqd~vaa~l~~~gi~v~a~~~~ 94 (413)
T cd00401 68 CNIFSTQDHAAAAIAAAGIPVFAWKGE 94 (413)
T ss_pred CCCccchHHHHHHHHhcCceEEEEcCC
Confidence 679999999999999999999997543
No 110
>PRK08227 autoinducer 2 aldolase; Validated
Probab=21.71 E-value=2e+02 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHcCceEEEeccCCCCCCCCCCCCCCChHHHHHHHHH
Q 041959 113 KLREYRKEKGIHFSACSPLGAVGTNWGHNRVMENEVLKQIAEA 155 (172)
Q Consensus 113 ~l~~~~~~~gi~v~a~~pl~~~g~~~g~~~~~~~~~l~~ia~~ 155 (172)
++.+.|+++|+.+++|.|.+. ..-+++.+...|.+
T Consensus 131 ~v~~ea~~~G~Plla~~prG~--------~~~~~~~~ia~aaR 165 (264)
T PRK08227 131 QLVDAGLRYGMPVMAVTAVGK--------DMVRDARYFSLATR 165 (264)
T ss_pred HHHHHHHHhCCcEEEEecCCC--------CcCchHHHHHHHHH
No 111
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=21.70 E-value=1.2e+02 Score=17.70 Aligned_cols=22 Identities=32% Similarity=0.117 Sum_probs=17.2
Q ss_pred HHHHHHHHhC-CCHHHHHHHhcc
Q 041959 148 VLKQIAEANG-KTVAQLIHNSFF 169 (172)
Q Consensus 148 ~l~~ia~~~~-~t~aqial~w~~ 169 (172)
....||+..+ .|+.|+-.||.-
T Consensus 19 ~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 19 DWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp -HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CHHHHHHHHCcCCHHHHHHHHHH
Confidence 4678898998 999999999865
No 112
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=21.54 E-value=97 Score=20.82 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCeeecCC
Q 041959 33 FKERVLHAIKLGYRHFDTAA 52 (172)
Q Consensus 33 ~~~~v~~a~~~G~~~~DtA~ 52 (172)
..+++..|.+.|++.||-..
T Consensus 116 ~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 116 LWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred HHHHHHHHHHCCCCEEEECC
Confidence 57899999999999999653
No 113
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=21.44 E-value=1.1e+02 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHhc
Q 041959 144 MENEVLKQIAEANGKTVAQLIHNSF 168 (172)
Q Consensus 144 ~~~~~l~~ia~~~~~t~aqial~w~ 168 (172)
++.+.-..+|+..|..|-||++.|-
T Consensus 75 L~p~~K~~LAk~LgL~pRQVavWFQ 99 (198)
T KOG0483|consen 75 LEPERKKKLAKELGLQPRQVAVWFQ 99 (198)
T ss_pred cChHHHHHHHHhhCCChhHHHHHHh
Confidence 3447888999999999999999763
No 114
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481
Probab=21.32 E-value=74 Score=20.90 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCeeecCCCCC-ChHHHHHHHHHHhhcCC
Q 041959 34 KERVLHAIKLGYRHFDTAAAYP-SEQPLGEALAEALRLAS 72 (172)
Q Consensus 34 ~~~v~~a~~~G~~~~DtA~~Yg-~E~~iG~~l~~~~~~~~ 72 (172)
..++..-++.|...-+-|..|| |-....+|++.+..+|.
T Consensus 15 ~~lv~~vv~~g~~~a~aA~~~gVS~~Ta~kW~~Ryra~G~ 54 (85)
T PF13011_consen 15 LRLVRRVVEQGWPVAHAAAEFGVSRRTAYKWLARYRAEGE 54 (85)
T ss_pred HHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHcCc
Confidence 4567777899999999999999 89999999999866654
No 115
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=21.25 E-value=88 Score=25.40 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCceEEEe
Q 041959 112 KKLREYRKEKGIHFSAC 128 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~ 128 (172)
++++++|+++||.|+.=
T Consensus 76 ~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 76 RELVAYAKERGIEVIPE 92 (351)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHcCCceeee
Confidence 68999999999999864
No 116
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.25 E-value=1.2e+02 Score=15.79 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhCCC
Q 041959 31 EAFKERVLHAIKLGYR 46 (172)
Q Consensus 31 ~~~~~~v~~a~~~G~~ 46 (172)
++-.+++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4567788888888875
No 117
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=21.23 E-value=82 Score=27.70 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHhCCCeeecCCC
Q 041959 29 LNEAFKERVLHAIKLGYRHFDTAAA 53 (172)
Q Consensus 29 ~~~~~~~~v~~a~~~G~~~~DtA~~ 53 (172)
+.-.+..-...|+++|++.||||-.
T Consensus 210 t~GlA~An~laAieAGad~vDtai~ 234 (499)
T PRK12330 210 TTGVTLVSLMKAIEAGVDVVDTAIS 234 (499)
T ss_pred CCCcHHHHHHHHHHcCCCEEEeecc
Confidence 3445667788999999999999843
No 118
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=21.18 E-value=81 Score=21.30 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=9.9
Q ss_pred HHHHHHHHhCCCHHHH
Q 041959 148 VLKQIAEANGKTVAQL 163 (172)
Q Consensus 148 ~l~~ia~~~~~t~aqi 163 (172)
.+.++|.+||.|..+|
T Consensus 74 n~~eLA~kyglS~r~I 89 (108)
T PF08765_consen 74 NVRELARKYGLSERQI 89 (108)
T ss_dssp -HHHHHHHHT--HHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 5678888888877665
No 119
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=20.93 E-value=1.3e+02 Score=18.79 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=20.1
Q ss_pred CccccHHHHHHHHHcCceEEEeccCCC
Q 041959 107 PIWQQKKLREYRKEKGIHFSACSPLGA 133 (172)
Q Consensus 107 ~~~~~~~l~~~~~~~gi~v~a~~pl~~ 133 (172)
+.....+.++..|+.|..+++|-+.|.
T Consensus 34 ~~~~~~~~I~~L~~~G~~vicY~s~Gs 60 (74)
T PF03537_consen 34 LFDFSKEEIARLKAQGKKVICYFSIGS 60 (74)
T ss_dssp SBS--HHHHHHHHHTT-EEEEEEESSE
T ss_pred CccCCHHHHHHHHHCCCEEEEEEeCce
Confidence 334456778889999999999999986
No 120
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=20.84 E-value=1.5e+02 Score=16.83 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.4
Q ss_pred HHHHHHHhCCCHHHHHHH
Q 041959 149 LKQIAEANGKTVAQLIHN 166 (172)
Q Consensus 149 l~~ia~~~~~t~aqial~ 166 (172)
+++||+..|+|++-|.-.
T Consensus 2 i~dIA~~agvS~~TVSr~ 19 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRV 19 (46)
T ss_dssp HHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 678999999999877543
No 121
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.65 E-value=3.4e+02 Score=23.64 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhCCCe--eecCCCCCChHHHHHHHHHH
Q 041959 30 NEAFKERVLHAIKLGYRH--FDTAAAYPSEQPLGEALAEA 67 (172)
Q Consensus 30 ~~~~~~~v~~a~~~G~~~--~DtA~~Yg~E~~iG~~l~~~ 67 (172)
.++..+.+...+++|++. +|+|+ |.-..+-+.+++.
T Consensus 223 ~~~~~~ra~~Lv~aGVd~i~~D~a~--g~~~~~~~~i~~i 260 (475)
T TIGR01303 223 NGDVGGKAKALLDAGVDVLVIDTAH--GHQVKMISAIKAV 260 (475)
T ss_pred CccHHHHHHHHHHhCCCEEEEeCCC--CCcHHHHHHHHHH
Confidence 356678888888999988 79998 5224444444443
No 122
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=20.58 E-value=99 Score=26.08 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCcccccccccCChhHHHHHHHHHHHhCCCeeecCCCC
Q 041959 17 IPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAY 54 (172)
Q Consensus 17 ~p~ig~Gt~~~~~~~~~~~~v~~a~~~G~~~~DtA~~Y 54 (172)
-|+--+|... -..+..|+..|+..|||+.-+
T Consensus 256 kPRyLmGvG~-------P~di~~~V~~GvD~FDcv~Pt 286 (372)
T PRK01008 256 RPVHLLGIGD-------LPSIWATVGFGIDSFDSSYPT 286 (372)
T ss_pred CCeEEecCCC-------HHHHHHHHHhCCCeeeeccch
Confidence 4555555544 245566999999999998544
No 123
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.45 E-value=2.6e+02 Score=21.77 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHhCCCeeecCCCCCC-------hHHHHHHHHHHhhcCCc
Q 041959 30 NEAFKERVLHAIKLGYRHFDTAAAYPS-------EQPLGEALAEALRLASF 73 (172)
Q Consensus 30 ~~~~~~~v~~a~~~G~~~~DtA~~Yg~-------E~~iG~~l~~~~~~~~~ 73 (172)
.+...+.+++|++.|++.|-.+..... ...+.++++...+.+++
T Consensus 88 ~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~Gil 138 (247)
T cd07491 88 PQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGIL 138 (247)
T ss_pred HHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeE
Confidence 356889999999999999998865442 46677777776555654
No 124
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=20.43 E-value=58 Score=25.38 Aligned_cols=37 Identities=32% Similarity=0.292 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHhCCCeeecCCCCCChHHHHHHHHHH
Q 041959 30 NEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALAEA 67 (172)
Q Consensus 30 ~~~~~~~v~~a~~~G~~~~DtA~~Yg~E~~iG~~l~~~ 67 (172)
.|--......|.+.|+++||.. +|.+|...=+.+..+
T Consensus 198 Gd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 198 GDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp SS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred ccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 3445667888899999999965 777776655555544
No 125
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=20.41 E-value=1.1e+02 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=23.3
Q ss_pred hCCccccHHHHHHHHHcCceEEEecc
Q 041959 105 TNPIWQQKKLREYRKEKGIHFSACSP 130 (172)
Q Consensus 105 ~~~~~~~~~l~~~~~~~gi~v~a~~p 130 (172)
.||+.+|+++.....+.||.|++|.-
T Consensus 64 ~np~stqd~vaaaL~~~gi~v~a~~~ 89 (406)
T TIGR00936 64 CNPLSTQDDVAAALAKAGIPVFAWRG 89 (406)
T ss_pred cCCccccHHHHHHHHhCCceEEEecC
Confidence 57998999999999999999999863
No 126
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.38 E-value=81 Score=25.73 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCceEEEe
Q 041959 112 KKLREYRKEKGIHFSAC 128 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~ 128 (172)
++++++|+++||.|+.=
T Consensus 85 ~eiv~yA~~rgI~vIPE 101 (326)
T cd06564 85 KELIAYAKDRGVNIIPE 101 (326)
T ss_pred HHHHHHHHHcCCeEecc
Confidence 78999999999999853
No 127
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.32 E-value=94 Score=25.13 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCceEEEe
Q 041959 112 KKLREYRKEKGIHFSAC 128 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~ 128 (172)
++++++|+++||.|++-
T Consensus 63 ~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 63 REIDDYAAELGIEVIPL 79 (301)
T ss_pred HHHHHHHHHcCCEEEec
Confidence 68999999999999964
No 128
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=20.27 E-value=21 Score=20.13 Aligned_cols=36 Identities=8% Similarity=-0.061 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCeeecCCCCC-ChHHHHHHHHHHhhcCC
Q 041959 36 RVLHAIKLGYRHFDTAAAYP-SEQPLGEALAEALRLAS 72 (172)
Q Consensus 36 ~v~~a~~~G~~~~DtA~~Yg-~E~~iG~~l~~~~~~~~ 72 (172)
++....+ |.+.=+.|..+| |...+..|++++.++|+
T Consensus 10 ii~l~~~-G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 10 IIRLLRE-GWSIREIAKRLGVSRSTVYRWIKRYREEGL 46 (50)
T ss_dssp HHHHHHH-T--HHHHHHHHTS-HHHHHHHHT-------
T ss_pred HHHHHHC-CCCHHHHHHHHCcCHHHHHHHHHHcccccc
Confidence 3443344 999889999999 89999999988755554
No 129
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=20.26 E-value=1.3e+02 Score=26.45 Aligned_cols=42 Identities=26% Similarity=0.178 Sum_probs=32.6
Q ss_pred CCcCCcc-ccccccc---CChhHHHHHHHHHHHhCCCe---eecCCCCC
Q 041959 14 GKSIPLV-GFGTVEY---PLNEAFKERVLHAIKLGYRH---FDTAAAYP 55 (172)
Q Consensus 14 g~~~p~i-g~Gt~~~---~~~~~~~~~v~~a~~~G~~~---~DtA~~Yg 55 (172)
-.+.|-+ ..|++.. -+.+++.++|++|...|||. |||-.+-|
T Consensus 229 ~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 229 SPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred cCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeecccCCcccc
Confidence 3456777 7777663 36889999999999999998 89876555
No 130
>PRK13702 replication protein; Provisional
Probab=20.16 E-value=1.3e+02 Score=19.76 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcc
Q 041959 147 EVLKQIAEANGKTVAQLIHNSFF 169 (172)
Q Consensus 147 ~~l~~ia~~~~~t~aqial~w~~ 169 (172)
+.|.+++++.|.|-|++.=+||.
T Consensus 54 ~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 54 DKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Confidence 68889999999999999888875
No 131
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=20.05 E-value=2.2e+02 Score=21.33 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCceEEEeccCCC----------CCCCCC-------CCCCCChHHHHHHHHHhCCCHHHHHHHh
Q 041959 112 KKLREYRKEKGIHFSACSPLGA----------VGTNWG-------HNRVMENEVLKQIAEANGKTVAQLIHNS 167 (172)
Q Consensus 112 ~~l~~~~~~~gi~v~a~~pl~~----------~g~~~g-------~~~~~~~~~l~~ia~~~~~t~aqial~w 167 (172)
.+++.++..+|+.++.- |+.. .|-..| ......++.-.+.|+.+|...++++.++
T Consensus 126 ~~l~~~l~~~Gm~vv~~-~~~~~~~~~~~~~~gg~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 126 LSTWTTLLHHGMIIVPL-PYAAQEQMGVDEVRGGSPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred HHHHHHHHHCCCEEeCC-CcccccccccccccCCCCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 46777788999988762 1111 011111 1122334567788888999999998764
Done!