Query 041961
Match_columns 122
No_of_seqs 132 out of 1087
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 21:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 5.2E-46 1.8E-50 273.4 7.6 118 1-120 35-152 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 2E-45 6.7E-50 275.5 8.9 119 1-121 62-181 (204)
3 3h16_A TIR protein; bacteria T 99.9 2.4E-28 8.2E-33 174.5 1.2 106 1-111 46-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 7.4E-24 2.5E-28 150.8 -3.1 105 1-108 37-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.7 1.1E-19 3.7E-24 129.3 0.1 76 2-77 34-111 (149)
6 2j67_A TOLL like receptor 10; 99.7 4.6E-19 1.6E-23 129.8 0.9 75 1-75 63-139 (178)
7 2js7_A Myeloid differentiation 99.7 4E-19 1.4E-23 127.9 0.2 72 2-73 44-117 (160)
8 1t3g_A X-linked interleukin-1 99.7 1.8E-18 6.1E-23 124.4 3.4 74 1-74 40-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.5 3.1E-14 1.1E-18 122.3 5.3 73 1-73 701-774 (844)
10 3hyn_A Putative signal transdu 92.3 0.42 1.4E-05 34.9 6.5 66 16-84 67-133 (189)
11 1eiw_A Hypothetical protein MT 88.9 0.19 6.5E-06 33.5 1.9 40 25-68 35-74 (111)
12 2d00_A V-type ATP synthase sub 70.7 7.9 0.00027 25.3 4.8 38 1-42 21-58 (109)
13 3aon_B V-type sodium ATPase su 64.2 6.6 0.00023 26.0 3.4 36 2-42 21-56 (115)
14 1byr_A Protein (endonuclease); 57.9 19 0.00064 23.5 4.8 28 14-41 11-38 (155)
15 2i4r_A V-type ATP synthase sub 56.3 8.7 0.0003 24.9 2.8 27 16-42 39-65 (102)
16 4a6h_A Phosphatidylinositol 4, 45.0 14 0.0005 24.1 2.5 20 96-115 101-120 (120)
17 3ro3_B Minsc, peptide of prote 41.4 21 0.00071 16.8 2.0 15 98-112 7-21 (22)
18 1v5p_A Pleckstrin homology dom 36.7 25 0.00086 22.9 2.7 20 96-115 103-122 (126)
19 2d9v_A Pleckstrin homology dom 36.4 28 0.00097 22.3 2.9 22 96-117 97-118 (130)
20 2yry_A Pleckstrin homology dom 36.3 26 0.0009 21.7 2.7 19 96-114 103-121 (122)
21 2coc_A FYVE, rhogef and PH dom 34.2 28 0.00097 22.3 2.6 18 96-113 89-106 (112)
22 2lul_A Tyrosine-protein kinase 33.2 25 0.00086 23.8 2.3 20 96-115 104-123 (164)
23 2cof_A Protein KIAA1914; PH do 32.7 34 0.0011 20.9 2.7 19 96-114 84-102 (107)
24 2ov6_A V-type ATP synthase sub 32.5 38 0.0013 21.5 3.0 37 2-42 19-56 (101)
25 2i5f_A Pleckstrin; PH domain, 31.3 35 0.0012 20.6 2.6 17 96-112 92-108 (109)
26 3dt5_A Uncharacterized protein 31.1 55 0.0019 21.4 3.5 37 39-75 36-76 (135)
27 1x1g_A Pleckstrin 2; PH domain 30.4 38 0.0013 21.2 2.7 20 96-115 107-126 (129)
28 1upq_A PEPP1; PH domain, phosp 28.8 40 0.0014 20.8 2.6 21 96-116 92-112 (123)
29 1dro_A Beta-spectrin; cytoskel 28.5 38 0.0013 21.3 2.5 20 96-115 102-121 (122)
30 3aj4_A Pleckstrin homology dom 27.9 43 0.0015 20.4 2.6 17 96-112 94-110 (112)
31 2efe_B Small GTP-binding prote 27.6 1.2E+02 0.0042 19.3 5.0 32 21-55 77-108 (181)
32 3cxb_B Pleckstrin homology dom 27.4 44 0.0015 20.9 2.6 18 96-113 84-101 (112)
33 1wgq_A FYVE, rhogef and PH dom 26.9 44 0.0015 20.3 2.5 18 96-113 86-103 (109)
34 1x05_A Pleckstrin; PH domain, 25.9 52 0.0018 20.6 2.8 20 96-115 103-122 (129)
35 2dkp_A Pleckstrin homology dom 25.9 46 0.0016 20.7 2.5 19 96-114 102-120 (128)
36 1tu9_A Hypothetical protein PA 25.7 28 0.00097 22.5 1.5 32 84-115 95-128 (134)
37 1x1f_A Signal-transducing adap 25.6 44 0.0015 22.5 2.5 21 96-116 96-116 (149)
38 2d9y_A Pleckstrin homology dom 25.6 51 0.0017 20.1 2.6 19 96-114 92-110 (117)
39 1wjm_A Beta-spectrin III; PH d 25.6 43 0.0015 20.9 2.3 18 96-113 100-117 (123)
40 1v89_A Hypothetical protein KI 25.4 48 0.0016 20.1 2.5 19 96-114 95-113 (118)
41 2w2x_D 1-phosphatidylinositol- 25.1 42 0.0014 21.4 2.2 19 96-114 102-120 (124)
42 2nrl_A Myoglobin; transport pr 25.0 27 0.00091 23.2 1.3 44 69-115 93-136 (147)
43 1v88_A Oxysterol binding prote 24.1 60 0.0021 21.1 2.9 20 96-115 107-126 (130)
44 1u5d_A SKAP55, SRC kinase-asso 23.9 50 0.0017 19.6 2.3 18 96-113 88-105 (108)
45 2dn6_A KIAA0640 protein; PH do 23.6 51 0.0017 20.0 2.3 19 96-114 86-104 (115)
46 2d9x_A Oxysterol binding prote 23.2 51 0.0017 20.5 2.3 20 96-115 87-106 (120)
47 2dhk_A TBC1 domain family memb 23.2 56 0.0019 20.4 2.5 17 96-112 87-103 (119)
48 1v5u_A SBF1, SET binding facto 23.1 52 0.0018 20.0 2.3 20 96-115 94-113 (117)
49 1fgy_A GRP1; PH domain, signal 22.5 54 0.0018 20.2 2.3 18 96-113 103-120 (127)
50 3g46_A Globin-1; oxygen transp 21.8 49 0.0017 21.8 2.1 41 69-113 104-144 (146)
51 2pp6_A Gifsy-2 prophage ATP-bi 21.2 24 0.00084 23.0 0.4 22 21-42 43-64 (102)
52 1btn_A Beta-spectrin; signal t 21.2 60 0.002 19.3 2.3 16 96-111 91-106 (106)
53 1unq_A RAC-alpha serine/threon 20.9 61 0.0021 20.2 2.3 18 96-113 93-110 (125)
54 2j59_M RHO-GTPase activating p 20.5 70 0.0024 21.1 2.7 20 96-115 94-113 (168)
55 2cod_A Centaurin-delta 1; ARF 20.4 70 0.0024 19.5 2.5 17 96-112 82-98 (115)
56 3rcp_A Pleckstrin homology dom 20.2 61 0.0021 19.3 2.2 19 96-114 76-94 (103)
57 3ubc_A Hemoglobin-like flavopr 20.2 72 0.0025 20.3 2.6 42 69-114 84-128 (131)
58 2yan_A Glutaredoxin-3; oxidore 20.2 44 0.0015 20.4 1.5 36 18-55 6-43 (105)
59 1pls_A Pleckstrin homology dom 20.0 73 0.0025 19.3 2.5 19 96-114 84-102 (113)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=5.2e-46 Score=273.42 Aligned_cols=118 Identities=47% Similarity=0.813 Sum_probs=100.4
Q ss_pred CCeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccCcHHHHHHHHHHHhccccCCceeeeeeecCCCccccccc
Q 041961 1 KKIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYASSKWCLNELVKILDCKNMKGQIIIPVFYGVSPSDVRHQT 80 (122)
Q Consensus 1 ~gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~vlPVfy~v~ps~v~~q~ 80 (122)
+||++|+|++++++|+.|.++|.+||++|+++|+|||+||++|+|||+||++|++|.++++++|+||||+|+|++||+|+
T Consensus 35 ~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~ 114 (176)
T 3jrn_A 35 RSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT 114 (176)
T ss_dssp TTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTC
T ss_pred CCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CchhhHHHHHHHhhcCCHHHHHHHHHHHHHhhcccccccc
Q 041961 81 GIFGLGFGKLEQQFKEQPEMVRKWRDALTESSHLAGHEST 120 (122)
Q Consensus 81 g~f~~~f~~~~~~~~~~~~~~~~W~~AL~~v~~~~G~~~~ 120 (122)
|.||++|.+|+++ .+.+++++||.||++|||++||++.
T Consensus 115 g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 115 GVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp THHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred CcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 9999999999987 5789999999999999999999874
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2e-45 Score=275.48 Aligned_cols=119 Identities=47% Similarity=0.790 Sum_probs=113.8
Q ss_pred CCeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccCcHHHHHHHHHHHhcccc-CCceeeeeeecCCCcccccc
Q 041961 1 KKIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYASSKWCLNELVKILDCKNM-KGQIIIPVFYGVSPSDVRHQ 79 (122)
Q Consensus 1 ~gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~~~-~~~~vlPVfy~v~ps~v~~q 79 (122)
+||++|+|++++++|+.|.++|.+||++|+++|||||+||++|+|||+||++|++|+++ ++++|+||||+|+|++||+|
T Consensus 62 ~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q 141 (204)
T 3ozi_A 62 YKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQ 141 (204)
T ss_dssp TTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHT
T ss_pred CCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhc
Confidence 59999999989999999999999999999999999999999999999999999999875 68999999999999999999
Q ss_pred cCchhhHHHHHHHhhcCCHHHHHHHHHHHHHhhccccccccC
Q 041961 80 TGIFGLGFGKLEQQFKEQPEMVRKWRDALTESSHLAGHESTK 121 (122)
Q Consensus 80 ~g~f~~~f~~~~~~~~~~~~~~~~W~~AL~~v~~~~G~~~~~ 121 (122)
+|.||++|.+|++++ +++++++||.||++||+++||++.+
T Consensus 142 ~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~ 181 (204)
T 3ozi_A 142 TGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGK 181 (204)
T ss_dssp CTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECT
T ss_pred cccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCC
Confidence 999999999999886 4789999999999999999999875
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=2.4e-28 Score=174.50 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=92.9
Q ss_pred CCeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccCcHHHHHHHHHHHhccccCCceeeeeeecCCCccccccc
Q 041961 1 KKIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYASSKWCLNELVKILDCKNMKGQIIIPVFYGVSPSDVRHQT 80 (122)
Q Consensus 1 ~gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~vlPVfy~v~ps~v~~q~ 80 (122)
+||++|+|++++.+|+.+.++|.+||++|+++|+|+|+||++|.||++||..+++|...+++.|+||||+|+|++|++|+
T Consensus 46 ~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~ 125 (154)
T 3h16_A 46 AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125 (154)
T ss_dssp HTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTC
T ss_pred CCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCC
Confidence 48999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred CchhhHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 041961 81 GIFGLGFGKLEQQFKEQPEMVRKWRDALTES 111 (122)
Q Consensus 81 g~f~~~f~~~~~~~~~~~~~~~~W~~AL~~v 111 (122)
|.|+++|..+... ..+..+-+.|.++
T Consensus 126 ~~~~~~~~~~~~~-----~~~~~ia~~l~~l 151 (154)
T 3h16_A 126 PTMADKLAFNTST-----KSVDEIVADLMAI 151 (154)
T ss_dssp CCCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred ccHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence 9999988755432 2244444555443
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.85 E-value=7.4e-24 Score=150.83 Aligned_cols=105 Identities=19% Similarity=0.327 Sum_probs=69.1
Q ss_pred CCeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccCcHHHHHHHHHHHhccccCCceeeeeeecCCCccc----
Q 041961 1 KKIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYASSKWCLNELVKILDCKNMKGQIIIPVFYGVSPSDV---- 76 (122)
Q Consensus 1 ~gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~vlPVfy~v~ps~v---- 76 (122)
+|+++|+|++++.+|+.+.++|.+||++|+.+|+|||+||++|.||+.||..++.+.......||||||+|+++++
T Consensus 37 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~L 116 (146)
T 3ub2_A 37 ASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPEL 116 (146)
T ss_dssp ----------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGG
T ss_pred CCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHH
Confidence 3899999999999999999999999999999999999999999999999999999864344467799999985554
Q ss_pred ccccCchhhHHHHHHHhhcCCHHHHHHHHHHH
Q 041961 77 RHQTGIFGLGFGKLEQQFKEQPEMVRKWRDAL 108 (122)
Q Consensus 77 ~~q~g~f~~~f~~~~~~~~~~~~~~~~W~~AL 108 (122)
+...... +..+...|....+.|.+|++||
T Consensus 117 r~~~~id---~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 117 RFMYYVD---GRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp GGSCCEE---TTSGGGGHHHHHHHHHHHHTTC
T ss_pred hCeeeee---ccChHhhHHHHHHHHHHHHHhc
Confidence 5444321 1223344444468899999886
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.74 E-value=1.1e-19 Score=129.30 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=68.0
Q ss_pred CeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccCcHHHHHHHHHHHh-ccccCCceeeeeeec-CCCcccc
Q 041961 2 KIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYASSKWCLNELVKILD-CKNMKGQIIIPVFYG-VSPSDVR 77 (122)
Q Consensus 2 gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~-~~~~~~~~vlPVfy~-v~ps~v~ 77 (122)
|+++|+|++++.+|+.+.++|.+||++|+++|+|+|+||++|.||+.||..++. +.+..++.|+||||+ +++..+.
T Consensus 34 g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 34 PFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp CCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred CeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 899999999999999999999999999999999999999999999999999885 456677899999995 5554443
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.72 E-value=4.6e-19 Score=129.78 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=62.9
Q ss_pred CCeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccCcHHHHHHHHHHHhcc-ccCCceeeeeeec-CCCcc
Q 041961 1 KKIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYASSKWCLNELVKILDCK-NMKGQIIIPVFYG-VSPSD 75 (122)
Q Consensus 1 ~gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~-~~~~~~vlPVfy~-v~ps~ 75 (122)
+|+++|+|++++.+|+.+.++|.+||++|+.+|+|+|+||++|.||++||..++.+. +..++.||||||+ +.+..
T Consensus 63 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~ 139 (178)
T 2j67_A 63 GSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYC 139 (178)
T ss_dssp -CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCCCGGG
T ss_pred CCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChHH
Confidence 489999999999999999999999999999999999999999999999999998654 5567899999996 44433
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.72 E-value=4e-19 Score=127.93 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=66.0
Q ss_pred CeeEEeeCCCCCCCCcchHHHHHHHh-hccceEEEeecCccCcHHHHHHHHHHHhcc-ccCCceeeeeeecCCC
Q 041961 2 KIRTFVDDEELRRGDEISPALLNAIQ-GSKISVVVFSKDYASSKWCLNELVKILDCK-NMKGQIIIPVFYGVSP 73 (122)
Q Consensus 2 gi~~f~D~~~~~~G~~i~~~i~~aIe-~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~-~~~~~~vlPVfy~v~p 73 (122)
|+++|+|++++.+|+.+.++|.++|+ .|+.+|+|+|+||++|.||+.|+..++++. +..+++||||||+.-+
T Consensus 44 g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 44 RLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp CCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred ceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 79999999999999999999999999 799999999999999999999999999875 4456799999998654
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.72 E-value=1.8e-18 Score=124.40 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=67.6
Q ss_pred CCeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCcc-CcHHHHHHHHHHHhcc-ccCCceeeeeeecCCCc
Q 041961 1 KKIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYA-SSKWCLNELVKILDCK-NMKGQIIIPVFYGVSPS 74 (122)
Q Consensus 1 ~gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~-~S~wCl~EL~~i~~~~-~~~~~~vlPVfy~v~ps 74 (122)
+|+++|+|++++.+|+.+.++|.+||++|+.+|+|+|+||+ .|.||+.|+..++.+. ...++.||||+|.-.+.
T Consensus 40 ~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 40 YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 58999999999999999999999999999999999999997 9999999999999875 66778999999875443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.47 E-value=3.1e-14 Score=122.27 Aligned_cols=73 Identities=16% Similarity=0.308 Sum_probs=67.0
Q ss_pred CCeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccCcHHHHHHHHHHHhcc-ccCCceeeeeeecCCC
Q 041961 1 KKIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYASSKWCLNELVKILDCK-NMKGQIIIPVFYGVSP 73 (122)
Q Consensus 1 ~gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~-~~~~~~vlPVfy~v~p 73 (122)
+|+++|++++++.+|+.+.++|.+||++||.+|+|+|++|+.|.||.+|+..++.+. ++.+++|+||||+-.|
T Consensus 701 ~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 701 NRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred CceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 379999999999999999999999999999999999999999999999999998764 6678899999997544
No 10
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=92.32 E-value=0.42 Score=34.88 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=49.9
Q ss_pred CcchHHHHHHHhhccceEEEeecCccCcHHHHHHHHHHHhccccCCceeeeeeecC-CCcccccccCchh
Q 041961 16 DEISPALLNAIQGSKISVVVFSKDYASSKWCLNELVKILDCKNMKGQIIIPVFYGV-SPSDVRHQTGIFG 84 (122)
Q Consensus 16 ~~i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~vlPVfy~v-~ps~v~~q~g~f~ 84 (122)
..|-+.|.+.|..|+.+|+++|++...|.|-..|+..+++ +.+..|+-|.-+- ..+++..-.|.|.
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 4577899999999999999999999999999999998872 2446777776543 2445555445543
No 11
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=88.87 E-value=0.19 Score=33.53 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=30.7
Q ss_pred HHhhccceEEEeecCccCcHHHHHHHHHHHhccccCCceeeeee
Q 041961 25 AIQGSKISVVVFSKDYASSKWCLNELVKILDCKNMKGQIIIPVF 68 (122)
Q Consensus 25 aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~vlPVf 68 (122)
.|+.|++.||..+++-.+|+||..|+..+.+ .+..|+-|.
T Consensus 35 ~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~----~gkpIigV~ 74 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWGTRRDEILGAVDLARK----SSKPIITVR 74 (111)
T ss_dssp CSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT----TTCCEEEEC
T ss_pred ccccCCEEEEEeCCCcCCChHHHHHHHHHHH----cCCCEEEEE
Confidence 4677888888888888999999999987654 344555553
No 12
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=70.65 E-value=7.9 Score=25.26 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=28.2
Q ss_pred CCeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccC
Q 041961 1 KKIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYAS 42 (122)
Q Consensus 1 ~gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~ 42 (122)
.||.+|.-.. .+++...+.+.+++.++.||+++++.+.
T Consensus 21 aGi~~~~v~~----~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 21 AGLEGYGASS----AEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp TTSEEEECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred cCCeEEEeCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 3777775432 3556666666777789999999999988
No 13
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=64.17 E-value=6.6 Score=25.97 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=26.0
Q ss_pred CeeEEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccC
Q 041961 2 KIRTFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYAS 42 (122)
Q Consensus 2 gi~~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~ 42 (122)
||.+|.... -+++...+.+.+++ ++.||+++++.+.
T Consensus 21 Gie~~~v~~----~ee~~~~~~~l~~~-digIIlIte~ia~ 56 (115)
T 3aon_B 21 GFDVQHGTT----KTEIRKTIDEMAKN-EYGVIYITEQCAN 56 (115)
T ss_dssp TCEEECCCS----HHHHHHHHHHHHHT-TEEEEEEEHHHHT
T ss_pred CCeEEEeCC----HHHHHHHHHHHHhc-CceEEEEeHHHHH
Confidence 777775432 35555566666677 9999999999877
No 14
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=57.90 E-value=19 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.0
Q ss_pred CCCcchHHHHHHHhhccceEEEeecCcc
Q 041961 14 RGDEISPALLNAIQGSKISVVVFSKDYA 41 (122)
Q Consensus 14 ~G~~i~~~i~~aIe~S~i~IvV~S~~y~ 41 (122)
+++.+.+.+.+.|+.++..|.+.++.+.
T Consensus 11 p~~~~~~~~~~~i~~A~~~I~i~~~~~~ 38 (155)
T 1byr_A 11 PEGSARVLVLSAIDSAKTSIRMMAYSFT 38 (155)
T ss_dssp TTTHHHHHHHHHHHHCSSEEEEEESSBC
T ss_pred CCCcHHHHHHHHHHHHhhEEEEEEEEeC
Confidence 4567788999999999999999998774
No 15
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=56.27 E-value=8.7 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=21.4
Q ss_pred CcchHHHHHHHhhccceEEEeecCccC
Q 041961 16 DEISPALLNAIQGSKISVVVFSKDYAS 42 (122)
Q Consensus 16 ~~i~~~i~~aIe~S~i~IvV~S~~y~~ 42 (122)
+++...+.+.+++.++.||+++++.+.
T Consensus 39 ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 39 EEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 455556666677789999999999887
No 16
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=45.01 E-value=14 Score=24.06 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
.+.+..+.|.+||..+++++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 46789999999999998764
No 17
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=41.35 E-value=21 Score=16.80 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhh
Q 041961 98 PEMVRKWRDALTESS 112 (122)
Q Consensus 98 ~~~~~~W~~AL~~v~ 112 (122)
-+.|++|.+-|...+
T Consensus 7 vDSV~rWmeDLr~MT 21 (22)
T 3ro3_B 7 VDSVQRWMEDLKLMT 21 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 477999999987643
No 18
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=36.69 E-value=25 Score=22.89 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 56889999999999998764
No 19
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.41 E-value=28 Score=22.33 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHhhccccc
Q 041961 96 EQPEMVRKWRDALTESSHLAGH 117 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~G~ 117 (122)
++++....|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 5688899999999999876643
No 20
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.31 E-value=26 Score=21.71 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
++++....|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4678899999999998765
No 21
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=34.20 E-value=28 Score=22.33 Aligned_cols=18 Identities=22% Similarity=0.695 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 041961 96 EQPEMVRKWRDALTESSH 113 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~ 113 (122)
++++..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 578999999999999764
No 22
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=33.21 E-value=25 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++....|.+||.++..-.
T Consensus 104 ~s~~e~~~Wi~aL~~~i~~n 123 (164)
T 2lul_A 104 PSPQSRDLWVKKLKEEIKNN 123 (164)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHC
Confidence 56788999999999997643
No 23
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.74 E-value=34 Score=20.95 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
++++...+|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 5688899999999988754
No 24
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=32.55 E-value=38 Score=21.51 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=26.7
Q ss_pred Cee-EEeeCCCCCCCCcchHHHHHHHhhccceEEEeecCccC
Q 041961 2 KIR-TFVDDEELRRGDEISPALLNAIQGSKISVVVFSKDYAS 42 (122)
Q Consensus 2 gi~-~f~D~~~~~~G~~i~~~i~~aIe~S~i~IvV~S~~y~~ 42 (122)
||. +|... .-+++...+.+.+++.++.|++++++.+.
T Consensus 19 Gi~~v~~v~----~~ee~~~~~~~l~~~~digIIlite~~a~ 56 (101)
T 2ov6_A 19 GISKVYETP----DIPATESAVRSVLEDKSVGILVMHNDDIG 56 (101)
T ss_dssp TCCEEEECC----STTTHHHHHHHHHHHTSSSEEEEEHHHHT
T ss_pred CCCceEecC----CHHHHHHHHHHHhhCCCeEEEEEcHHHHH
Confidence 566 66332 23666667777788889999999998776
No 25
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=31.34 E-value=35 Score=20.57 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHhh
Q 041961 96 EQPEMVRKWRDALTESS 112 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~ 112 (122)
++++....|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 46788999999999875
No 26
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=31.05 E-value=55 Score=21.40 Aligned_cols=37 Identities=14% Similarity=0.366 Sum_probs=24.4
Q ss_pred CccCcHHHHHHHHHHHhcccc--C--CceeeeeeecCCCcc
Q 041961 39 DYASSKWCLNELVKILDCKNM--K--GQIIIPVFYGVSPSD 75 (122)
Q Consensus 39 ~y~~S~wCl~EL~~i~~~~~~--~--~~~vlPVfy~v~ps~ 75 (122)
.|+-..-.-||+..|+.|++- + -.+|+|.-++.....
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadk 76 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADK 76 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEEC
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecch
Confidence 444445567999999999853 2 247888866554333
No 27
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.40 E-value=38 Score=21.22 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
.+++....|..||..+.+-+
T Consensus 107 ~s~~e~~~Wi~al~~~~~~~ 126 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSGP 126 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSSS
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 46889999999999987643
No 28
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=28.81 E-value=40 Score=20.84 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHhhcccc
Q 041961 96 EQPEMVRKWRDALTESSHLAG 116 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~G 116 (122)
++++....|..||..+....+
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~ 112 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEG 112 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHhccc
Confidence 467889999999999987654
No 29
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=28.46 E-value=38 Score=21.31 Aligned_cols=20 Identities=15% Similarity=0.337 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++.++.|..||..+++.+
T Consensus 102 ~s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 102 HDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSSHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 46788999999999987754
No 30
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=27.95 E-value=43 Score=20.42 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHhh
Q 041961 96 EQPEMVRKWRDALTESS 112 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~ 112 (122)
++++....|..||.++.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 46889999999999875
No 31
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=27.62 E-value=1.2e+02 Score=19.31 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=20.1
Q ss_pred HHHHHHhhccceEEEeecCccCcHHHHHHHHHHHh
Q 041961 21 ALLNAIQGSKISVVVFSKDYASSKWCLNELVKILD 55 (122)
Q Consensus 21 ~i~~aIe~S~i~IvV~S~~y~~S~wCl~EL~~i~~ 55 (122)
.....+..++.+|+|++-+ +...++++...++
T Consensus 77 ~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~ 108 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVT---NQASFERAKKWVQ 108 (181)
T ss_dssp GTHHHHTTCSEEEEEEETT---CHHHHHHHHHHHH
T ss_pred hhHHHhccCCEEEEEEECC---CHHHHHHHHHHHH
Confidence 3455678899999999854 3334444444433
No 32
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=27.39 E-value=44 Score=20.91 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 041961 96 EQPEMVRKWRDALTESSH 113 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~ 113 (122)
++++..+.|..||..++.
T Consensus 84 ~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 84 ESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 568899999999998765
No 33
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=26.90 E-value=44 Score=20.28 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 041961 96 EQPEMVRKWRDALTESSH 113 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~ 113 (122)
++++....|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 468889999999998764
No 34
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=25.93 E-value=52 Score=20.59 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++....|..||..+.+..
T Consensus 103 ~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 103 ATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp SSHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHcc
Confidence 46788999999999987643
No 35
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=25.87 E-value=46 Score=20.68 Aligned_cols=19 Identities=11% Similarity=0.386 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
++++....|..||..++..
T Consensus 102 ~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 102 DTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4678899999999988764
No 36
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=25.69 E-value=28 Score=22.49 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=21.3
Q ss_pred hhHHHHHHHhhc--CCHHHHHHHHHHHHHhhccc
Q 041961 84 GLGFGKLEQQFK--EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 84 ~~~f~~~~~~~~--~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++...-+.++ -+++....|..++..+++.-
T Consensus 95 ~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~~l 128 (134)
T 1tu9_A 95 LDALLMAVAEHDRDCDAETRDAWRDVMGRGIAVI 128 (134)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 455544433343 25788899999999988753
No 37
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.61 E-value=44 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHhhcccc
Q 041961 96 EQPEMVRKWRDALTESSHLAG 116 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~G 116 (122)
++++..+.|..||..|+.++.
T Consensus 96 ~s~ee~~eWi~aI~~v~~~~~ 116 (149)
T 1x1f_A 96 ENTESGEEWRGFILTVTELSV 116 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcccC
Confidence 467889999999999988653
No 38
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.58 E-value=51 Score=20.07 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
++++....|..||..+...
T Consensus 92 ~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 92 ESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp SSHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 4678899999999998764
No 39
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.56 E-value=43 Score=20.93 Aligned_cols=18 Identities=6% Similarity=0.256 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 041961 96 EQPEMVRKWRDALTESSH 113 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~ 113 (122)
++++.++.|..||..+++
T Consensus 100 ~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 100 KDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 468889999999998865
No 40
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.41 E-value=48 Score=20.10 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
++++....|..||..+..-
T Consensus 95 ~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 95 SSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 4678899999999998753
No 41
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=25.13 E-value=42 Score=21.39 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
++.+..+.|..||.+++..
T Consensus 102 ~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 102 DKVEELFEWFQSIREITWK 120 (124)
T ss_dssp CCCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4678899999999998754
No 42
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=25.03 E-value=27 Score=23.21 Aligned_cols=44 Identities=2% Similarity=-0.126 Sum_probs=27.9
Q ss_pred ecCCCcccccccCchhhHHHHHHHhhcCCHHHHHHHHHHHHHhhccc
Q 041961 69 YGVSPSDVRHQTGIFGLGFGKLEQQFKEQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 69 y~v~ps~v~~q~g~f~~~f~~~~~~~~~~~~~~~~W~~AL~~v~~~~ 115 (122)
|+|+|.+...-...+-.++..+ .. -+++....|..++..+++.-
T Consensus 93 ~~V~p~~f~~~~~~Ll~~l~~~-~~--~t~e~~~AW~~~~~~v~~~l 136 (147)
T 2nrl_A 93 HKIPINNFKLISEVLVKVMQEK-AG--LDAGGQTALRNVMGIIIADL 136 (147)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHH-SC--CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh-cc--CCHHHHHHHHHHHHHHHHHH
Confidence 3566665544433444455444 22 35888999999999988743
No 43
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.14 E-value=60 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++..+.|.+||..+....
T Consensus 107 ~s~~e~~~Wi~ai~~a~~~~ 126 (130)
T 1v88_A 107 TSESDGRCWMDALELALKSG 126 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 56888999999999987654
No 44
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=23.90 E-value=50 Score=19.60 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 041961 96 EQPEMVRKWRDALTESSH 113 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~ 113 (122)
++++....|..||..+.+
T Consensus 88 ~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 88 TSPAEARDWVDQISFLLK 105 (108)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 467889999999998754
No 45
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.56 E-value=51 Score=20.00 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
++++....|..||..+...
T Consensus 86 ~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 86 SDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4678899999999988754
No 46
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.20 E-value=51 Score=20.52 Aligned_cols=20 Identities=10% Similarity=0.234 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++....|..||..+....
T Consensus 87 ~s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 87 TDAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 46788999999999876543
No 47
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.16 E-value=56 Score=20.37 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHhh
Q 041961 96 EQPEMVRKWRDALTESS 112 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~ 112 (122)
++++...+|..||..+.
T Consensus 87 ~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 87 ATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 46788999999999875
No 48
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=23.07 E-value=52 Score=20.02 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++....|..||..+..-+
T Consensus 94 ~s~~e~~~Wi~al~~~i~~~ 113 (117)
T 1v5u_A 94 QDVPSAQQWVDRIQSCLSSG 113 (117)
T ss_dssp SSHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 46788999999999876543
No 49
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=22.47 E-value=54 Score=20.21 Aligned_cols=18 Identities=22% Similarity=0.483 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 041961 96 EQPEMVRKWRDALTESSH 113 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~ 113 (122)
++++....|..||..+..
T Consensus 103 ~s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 103 PSPEEKEEWMKSIKASIS 120 (127)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 467889999999998765
No 50
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=21.78 E-value=49 Score=21.84 Aligned_cols=41 Identities=7% Similarity=0.098 Sum_probs=26.1
Q ss_pred ecCCCcccccccCchhhHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 041961 69 YGVSPSDVRHQTGIFGLGFGKLEQQFKEQPEMVRKWRDALTESSH 113 (122)
Q Consensus 69 y~v~ps~v~~q~g~f~~~f~~~~~~~~~~~~~~~~W~~AL~~v~~ 113 (122)
|+|+|.+...-...+-.++.++ .-+++....|..++..|++
T Consensus 104 ~~V~p~~f~~~~~~ll~~l~~~----~~t~e~~~AW~k~~~~va~ 144 (146)
T 3g46_A 104 RKISAAEFGKINGPIKKVLASK----NFGDKYANAWAKLVAVVQA 144 (146)
T ss_dssp TTCCHHHHGGGHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHH
Confidence 4566666544333333444444 2368899999999998875
No 51
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=21.21 E-value=24 Score=23.02 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=12.5
Q ss_pred HHHHHHhhccceEEEeecCccC
Q 041961 21 ALLNAIQGSKISVVVFSKDYAS 42 (122)
Q Consensus 21 ~i~~aIe~S~i~IvV~S~~y~~ 42 (122)
..+.++..+..+++|||..|--
T Consensus 43 ~emg~lsG~~rsLvvFSsgYrP 64 (102)
T 2pp6_A 43 AELGPVEGNGKNVVVFSGNVIP 64 (102)
T ss_dssp C--------CEEEEECCSSCCC
T ss_pred HHhCCccCCceEEEEecCCccc
Confidence 5567799999999999999966
No 52
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=21.18 E-value=60 Score=19.32 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHHh
Q 041961 96 EQPEMVRKWRDALTES 111 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v 111 (122)
++++....|..||..+
T Consensus 91 ~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 91 KDDEEMNTWIQAISSA 106 (106)
T ss_dssp SSHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcC
Confidence 5688899999999753
No 53
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=20.89 E-value=61 Score=20.16 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 041961 96 EQPEMVRKWRDALTESSH 113 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~ 113 (122)
++++....|..||..+..
T Consensus 93 ~s~~e~~~Wi~al~~~~~ 110 (125)
T 1unq_A 93 ETPEEREEWTTAIQTVAD 110 (125)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 467889999999998764
No 54
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=20.52 E-value=70 Score=21.15 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 041961 96 EQPEMVRKWRDALTESSHLA 115 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~~ 115 (122)
++++....|..||..++...
T Consensus 94 ~s~~e~~~Wi~ai~~~~~~~ 113 (168)
T 2j59_M 94 EDRDDMLAWIKTIQESSNLN 113 (168)
T ss_dssp SSHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 46888999999999987643
No 55
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.37 E-value=70 Score=19.51 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHhh
Q 041961 96 EQPEMVRKWRDALTESS 112 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~ 112 (122)
++++....|..||..+.
T Consensus 82 ~s~~e~~~Wi~~l~~~~ 98 (115)
T 2cod_A 82 EKEEERNDWISILLNAL 98 (115)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 46788999999999886
No 56
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=20.24 E-value=61 Score=19.33 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
.+++..+.|..||..+...
T Consensus 76 ~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 76 VNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp SSHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4678899999999987543
No 57
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=20.20 E-value=72 Score=20.32 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=25.6
Q ss_pred ecCCCcccccccCchhhHHHHHHHh-hc--CCHHHHHHHHHHHHHhhcc
Q 041961 69 YGVSPSDVRHQTGIFGLGFGKLEQQ-FK--EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 69 y~v~ps~v~~q~g~f~~~f~~~~~~-~~--~~~~~~~~W~~AL~~v~~~ 114 (122)
|+|+|.+... +++++...-+. ++ -+++....|..++..+++.
T Consensus 84 ~gV~p~~f~~----~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~ 128 (131)
T 3ubc_A 84 YGVVDSHYPL----VGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQV 128 (131)
T ss_dssp TTCCTTHHHH----HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHH----HHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHH
Confidence 4566665543 34444433221 21 2588899999999998863
No 58
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=20.15 E-value=44 Score=20.43 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=18.9
Q ss_pred chHHHHHHHhhccceEEEeecCccCcHHHHH--HHHHHHh
Q 041961 18 ISPALLNAIQGSKISVVVFSKDYASSKWCLN--ELVKILD 55 (122)
Q Consensus 18 i~~~i~~aIe~S~i~IvV~S~~y~~S~wCl~--EL~~i~~ 55 (122)
+...+.+.|...+ |+||+......+||-. .+..+++
T Consensus 6 ~~~~~~~~i~~~~--vvvf~~g~~~~~~C~~C~~~~~~L~ 43 (105)
T 2yan_A 6 LEERLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILN 43 (105)
T ss_dssp HHHHHHHHHTSSS--EEEEESBCSSSBCTTHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--EEEEEecCCCCCCCccHHHHHHHHH
Confidence 3445556665443 6678764433455532 4444444
No 59
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.02 E-value=73 Score=19.32 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 041961 96 EQPEMVRKWRDALTESSHL 114 (122)
Q Consensus 96 ~~~~~~~~W~~AL~~v~~~ 114 (122)
.+++....|..||..+...
T Consensus 84 ~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 84 AFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4678899999999987654
Done!