Query         041964
Match_columns 494
No_of_seqs    164 out of 1926
Neff          11.1
Searched_HMMs 46136
Date          Fri Mar 29 12:31:53 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041964hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0 3.4E-87 7.4E-92  636.4  41.7  463   11-493    21-488 (489)
  2 PLN03234 cytochrome P450 83B1; 100.0 6.6E-81 1.4E-85  615.6  43.9  472   10-492    22-498 (499)
  3 KOG0158 Cytochrome P450 CYP3/C 100.0 1.3E-80 2.9E-85  581.5  35.9  455   15-493    30-499 (499)
  4 PLN02183 ferulate 5-hydroxylas 100.0 6.4E-80 1.4E-84  608.9  42.1  474    9-493    29-512 (516)
  5 PLN02971 tryptophan N-hydroxyl 100.0 5.3E-79 1.1E-83  604.2  43.6  468   11-492    52-533 (543)
  6 PLN02687 flavonoid 3'-monooxyg 100.0 1.3E-78 2.9E-83  599.6  45.9  469   13-493    31-509 (517)
  7 PLN02966 cytochrome P450 83A1  100.0 6.7E-78 1.5E-82  593.0  45.9  468   13-491    26-498 (502)
  8 PLN00110 flavonoid 3',5'-hydro 100.0 6.2E-78 1.4E-82  591.1  45.5  465   12-492    27-496 (504)
  9 PLN03112 cytochrome P450 famil 100.0 7.4E-78 1.6E-82  595.5  44.5  474   10-493    26-508 (514)
 10 PTZ00404 cytochrome P450; Prov 100.0   1E-76 2.2E-81  583.2  42.0  451   13-492    26-482 (482)
 11 PLN02394 trans-cinnamate 4-mon 100.0 1.2E-76 2.7E-81  585.8  41.8  468   12-493    26-502 (503)
 12 PLN00168 Cytochrome P450; Prov 100.0 2.2E-75 4.7E-80  577.0  46.3  476   11-493    30-517 (519)
 13 PLN02655 ent-kaurene oxidase   100.0 4.2E-75   9E-80  567.8  44.5  453   18-493     1-464 (466)
 14 PLN02290 cytokinin trans-hydro 100.0 4.7E-75   1E-79  575.8  42.1  453   14-493    40-515 (516)
 15 PLN03018 homomethionine N-hydr 100.0 4.8E-73   1E-77  557.2  47.7  465   14-492    38-523 (534)
 16 KOG0157 Cytochrome P450 CYP4/C 100.0 2.6E-74 5.7E-79  560.4  36.9  454   14-493    33-496 (497)
 17 KOG0159 Cytochrome P450 CYP11/ 100.0 1.2E-73 2.6E-78  521.6  37.5  456   13-493    47-518 (519)
 18 PF00067 p450:  Cytochrome P450 100.0 6.7E-75 1.5E-79  572.7  31.3  454   18-489     1-463 (463)
 19 PLN02738 carotene beta-ring hy 100.0 6.2E-73 1.3E-77  561.9  42.6  464   13-493   112-595 (633)
 20 PLN02500 cytochrome P450 90B1  100.0 2.4E-73 5.2E-78  559.5  38.4  439   12-492    34-489 (490)
 21 PLN02169 fatty acid (omega-1)- 100.0 2.4E-72 5.2E-77  550.4  39.8  451   16-492    31-499 (500)
 22 PLN02774 brassinosteroid-6-oxi 100.0 8.1E-73 1.8E-77  551.3  35.6  431   13-491    28-462 (463)
 23 PLN03195 fatty acid omega-hydr 100.0 4.2E-72 9.2E-77  554.2  39.5  455   17-492    31-515 (516)
 24 PLN03141 3-epi-6-deoxocathaste 100.0 6.5E-72 1.4E-76  543.7  40.0  438   11-492     2-449 (452)
 25 PLN02936 epsilon-ring hydroxyl 100.0 1.6E-70 3.5E-75  537.8  42.2  459   17-493    13-482 (489)
 26 PLN02196 abscisic acid 8'-hydr 100.0 1.4E-70 3.1E-75  535.0  36.8  426   14-492    33-462 (463)
 27 PLN02302 ent-kaurenoic acid ox 100.0 5.3E-69 1.2E-73  531.3  42.5  439   12-493    38-488 (490)
 28 PLN02987 Cytochrome P450, fami 100.0 1.6E-68 3.5E-73  518.4  39.9  434   13-493    27-469 (472)
 29 KOG0684 Cytochrome P450 [Secon 100.0 2.5E-69 5.4E-74  480.7  29.4  443   16-494    32-486 (486)
 30 PLN02426 cytochrome P450, fami 100.0 1.8E-66 3.8E-71  508.1  40.8  440   23-493    48-500 (502)
 31 PLN02648 allene oxide synthase 100.0   1E-60 2.3E-65  459.9  30.1  408   14-464    15-463 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 1.1E-54 2.4E-59  413.7  34.2  383   37-492    24-410 (411)
 33 PF12554 MOZART1:  Mitotic-spin  55.9      40 0.00088   20.9   4.4   42  285-326     6-47  (48)
 34 PF05952 ComX:  Bacillus compet  51.1     6.9 0.00015   25.2   0.6   25  307-331     4-28  (57)
 35 cd08780 Death_TRADD Death Doma  44.2 1.1E+02  0.0023   22.0   5.6   69  106-175    13-89  (90)
 36 PRK06789 flagellar motor switc  39.3      32  0.0007   23.7   2.5   40  350-389    21-62  (74)
 37 PF07886 BA14K:  BA14K-like pro  38.5      32 0.00068   19.1   1.9   16  421-436    16-31  (31)
 38 COG0851 MinE Septum formation   37.9      60  0.0013   23.1   3.6   18  315-332    35-52  (88)
 39 KOG3506 40S ribosomal protein   34.6      18 0.00039   22.9   0.6   10  427-436    13-22  (56)
 40 cd08318 Death_NMPP84 Death dom  32.4 1.9E+02   0.004   20.7   5.7   39  106-147    18-59  (86)
 41 PF09201 SRX:  SRX;  InterPro:   32.2      37  0.0008   26.5   2.0   23  433-455    18-40  (148)
 42 PF12508 DUF3714:  Protein of u  30.6      36 0.00079   28.9   2.0   42  345-388    53-94  (200)
 43 PF14483 Cut8_M:  Cut8 dimerisa  29.8      92   0.002   18.2   3.0   13  312-324    23-35  (38)
 44 PF13625 Helicase_C_3:  Helicas  29.3 1.2E+02  0.0027   23.5   4.7   40   36-77     75-114 (129)
 45 PF14129 DUF4296:  Domain of un  28.5 2.2E+02  0.0048   20.3   7.0   49  282-330    30-78  (87)
 46 COG2101 SPT15 TATA-box binding  25.5      24 0.00052   28.8   0.1   50  404-454    35-84  (185)
 47 KOG0114 Predicted RNA-binding   25.0   3E+02  0.0064   20.6   5.4   60   15-76     11-76  (124)
 48 PHA01346 hypothetical protein   23.8      69  0.0015   18.9   1.7   19  313-331    27-46  (53)
 49 PF13993 YccJ:  YccJ-like prote  23.6 1.2E+02  0.0025   19.8   2.8   31  295-325     8-39  (69)
 50 PF08492 SRP72:  SRP72 RNA-bind  23.2      53  0.0012   21.5   1.3    8  407-414    44-51  (59)
 51 PRK13991 cell division topolog  23.1 1.6E+02  0.0034   21.2   3.8   18  315-332    35-52  (87)
 52 PF13893 RRM_5:  RNA recognitio  23.0   2E+02  0.0044   18.0   5.0   36   41-76      1-40  (56)
 53 TIGR00589 ogt O-6-methylguanin  22.8 1.6E+02  0.0035   20.7   3.8   60  317-378     2-66  (80)
 54 PF10777 YlaC:  Inner membrane   21.7      40 0.00086   26.7   0.6   39  308-346   114-152 (155)
 55 PF09926 DUF2158:  Uncharacteri  21.6      86  0.0019   20.0   2.0   17   49-65      4-20  (53)
 56 PF14550 Peptidase_U35_2:  Puta  20.6      57  0.0012   25.1   1.3   22  367-388    71-92  (122)
 57 COG4828 Predicted membrane pro  20.4 2.1E+02  0.0044   21.2   3.8   48  294-344    27-87  (113)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=3.4e-87  Score=636.45  Aligned_cols=463  Identities=47%  Similarity=0.835  Sum_probs=408.2

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCC-cchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhccccccccccc-c
Q 041964           11 NPSNNNLPPSPSKLPIIGNLHQLGMT-PHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYS-S   88 (494)
Q Consensus        11 ~~~~~~~ppgP~~~p~~G~~~~~~~~-~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~-~   88 (494)
                      ++++.+.||||+++|+|||++++... ++..+.++.++|||+|.+++|..++|||+|+++++|++++++..|++|+.. .
T Consensus        21 ~~~~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~  100 (489)
T KOG0156|consen   21 YRKRRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTA  100 (489)
T ss_pred             ccCCCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchh
Confidence            44458899999999999999999766 999999999999999999999999999999999999999999999999982 2


Q ss_pred             hhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHH
Q 041964           89 IARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNV  168 (494)
Q Consensus        89 ~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~  168 (494)
                      ....+.+++.+.+++.+|+.|+.+||+++...++...++.....-.++++.+++.+.+ ...+ ++||+.+.+..++.++
T Consensus       101 ~~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~-~~vdl~~~l~~~~~nv  178 (489)
T KOG0156|consen  101 TLKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKG-EPVDLSELLDLLVGNV  178 (489)
T ss_pred             hHHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCC-ceeeHHHHHHHHHHHH
Confidence            4455665677888888999999999999899999999999888889999999999986 2233 8999999999999999


Q ss_pred             HHHHHhccccCCC--cchhHHHHHHHHHHHHhcccccccccc-chHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041964          169 ICRAAFGMTCGEG--EAGGKLKKLLEELGELLGMFCVGDFIP-WLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQ  245 (494)
Q Consensus       169 i~~~~fG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  245 (494)
                      |++.+||.++...  +...++.+++.+..+.++.+...+++| ++.++....+..+.......++..+++..++++++..
T Consensus       179 I~~~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~  258 (489)
T KOG0156|consen  179 ICRMLFGRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI  258 (489)
T ss_pred             HHHHHhCCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999874  334458899999999999988889999 6666653445666777777779999999999887764


Q ss_pred             hhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHH
Q 041964          246 RQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEE  325 (494)
Q Consensus       246 ~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~E  325 (494)
                       .     .    ++. .|++|.|++...++..+. +|+++|...+..+++||.|||++|+.|++.+|++||++|+|+|+|
T Consensus       259 -~-----~----~~~-~D~vD~lL~~~~~~~~~~-~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeE  326 (489)
T KOG0156|consen  259 -G-----D----EEG-RDFVDALLKLMKEEKAEG-LTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEE  326 (489)
T ss_pred             -c-----c----CCC-CcHHHHHHHhhcccccCC-CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence             1     0    033 899999999876543223 999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCC
Q 041964          326 VRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEK  405 (494)
Q Consensus       326 i~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~  405 (494)
                      |++++|.++.++.+|+.+||||+|||+|++|+||++|..+||.+++|+.|+||.||+||.|+++.|++|+||++|+||++
T Consensus       327 Id~vvG~~r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~e  406 (489)
T KOG0156|consen  327 IDEVVGKGRLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEE  406 (489)
T ss_pred             HHHHhCCCCCCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccc
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCe
Q 041964          406 FKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPL  485 (494)
Q Consensus       406 F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (494)
                      |+||||++++ +.+.....++|||.|+|.|||+.+|.+|+.++++.|+++||++++++    .+|+... +.++..+.++
T Consensus       407 F~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~----~~d~~e~-~~~~~~~~pl  480 (489)
T KOG0156|consen  407 FKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG----KVDMEEA-GLTLKKKKPL  480 (489)
T ss_pred             cChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC----CCCCccc-ccceecCCcc
Confidence            9999999875 22336789999999999999999999999999999999999998776    3455555 4777888889


Q ss_pred             EEEeeccC
Q 041964          486 VVVATPHR  493 (494)
Q Consensus       486 ~~~~~~~~  493 (494)
                      .+.+.+|.
T Consensus       481 ~~~~~~r~  488 (489)
T KOG0156|consen  481 KAVPVPRL  488 (489)
T ss_pred             eeeeecCC
Confidence            88888875


No 2  
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=6.6e-81  Score=615.56  Aligned_cols=472  Identities=44%  Similarity=0.810  Sum_probs=387.5

Q ss_pred             eCCCCCCCCCCCCCCCccccccCCCC-CcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccc
Q 041964           10 TNPSNNNLPPSPSKLPIIGNLHQLGM-TPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSS   88 (494)
Q Consensus        10 ~~~~~~~~ppgP~~~p~~G~~~~~~~-~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~   88 (494)
                      ..+++.+.||||+++|++||+..+.. ++..++.+++++||++|++++|+.++|+++||+++++|+.++...|.+++...
T Consensus        22 ~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~  101 (499)
T PLN03234         22 TTKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLK  101 (499)
T ss_pred             hcCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCch
Confidence            34566788999999999999988854 78999999999999999999999999999999999999999887888877644


Q ss_pred             hhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHH
Q 041964           89 IARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNV  168 (494)
Q Consensus        89 ~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~  168 (494)
                      ........+....+...++.|+++|+.+..+.|+.+.+..+.+.+.++++++++.|.+. .++++++|+.+.+..+++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~-~~~~~~vd~~~~~~~~t~dv  180 (499)
T PLN03234        102 GQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKA-ADQSGTVDLSELLLSFTNCV  180 (499)
T ss_pred             hhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHh-ccCCCeEEHHHHHHHHHHHH
Confidence            33222222233345566789999999854689999999999999999999999999754 44567899999999999999


Q ss_pred             HHHHHhccccCCCc-chhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041964          169 ICRAAFGMTCGEGE-AGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQ  247 (494)
Q Consensus       169 i~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  247 (494)
                      ++.++||.+++..+ ...++.+.+......+........+|++.++..+.+..++..++.+.+.+++..+++++++....
T Consensus       181 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  260 (499)
T PLN03234        181 VCRQAFGKRYNEYGTEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNRP  260 (499)
T ss_pred             HHHHHhCCcccccchhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999887542 22344454444433333223334456555443333444567788889999999999876543221


Q ss_pred             hhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 041964          248 DVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVR  327 (494)
Q Consensus       248 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~  327 (494)
                           +     ....|+++.|++..++++.+..++++++.+++..+++||+|||+++++|++++|++||++|+|+|+|++
T Consensus       261 -----~-----~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~  330 (499)
T PLN03234        261 -----K-----QETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVR  330 (499)
T ss_pred             -----C-----CCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence                 0     235689999997654432223689999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCC-CCCCCC
Q 041964          328 RIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASW-EEPEKF  406 (494)
Q Consensus       328 ~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~dp~~F  406 (494)
                      +++++++.++++++++||||+|||+|+||++|+++...+|.+.+|++++||.||+||.|.++++.+|+||++| +||++|
T Consensus       331 ~~~~~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F  410 (499)
T PLN03234        331 NVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEF  410 (499)
T ss_pred             HHhCCCCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhc
Confidence            9998877899999999999999999999999999987679999999999999999999999999999999999 899999


Q ss_pred             CCcccccccCC--CCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCC
Q 041964          407 KPERFLDNCSS--FKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFP  484 (494)
Q Consensus       407 ~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (494)
                      +||||+++...  .+.....++|||.|+|+|+|+++|++|+++++|+|+++|++++.++..++.+......|+..++++.
T Consensus       411 ~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (499)
T PLN03234        411 IPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEH  490 (499)
T ss_pred             CchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCC
Confidence            99999975432  2234678999999999999999999999999999999999999776443445566677899988889


Q ss_pred             eEEEeecc
Q 041964          485 LVVVATPH  492 (494)
Q Consensus       485 ~~~~~~~~  492 (494)
                      +.+.+++|
T Consensus       491 ~~~~~~~~  498 (499)
T PLN03234        491 LVLAPTKH  498 (499)
T ss_pred             eEEEeecC
Confidence            99999987


No 3  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.3e-80  Score=581.54  Aligned_cols=455  Identities=26%  Similarity=0.433  Sum_probs=362.0

Q ss_pred             CCCCCCCCCCCccccccCC--CCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhccccccccc--ccchh
Q 041964           15 NNLPPSPSKLPIIGNLHQL--GMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRP--YSSIA   90 (494)
Q Consensus        15 ~~~ppgP~~~p~~G~~~~~--~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~--~~~~~   90 (494)
                      ++-+|+|+++|++||+..+  .+.+.......+.+||+++.++.+.+|.++|+||+++++|+.++-+.|.++.  ....-
T Consensus        30 rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~  109 (499)
T KOG0158|consen   30 RRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDP  109 (499)
T ss_pred             cCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCC
Confidence            4478889899999999888  3444666666666669999999999999999999999999999999999854  22211


Q ss_pred             hhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHH
Q 041964           91 RKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVIC  170 (494)
Q Consensus        91 ~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~  170 (494)
                      ..  ......++...|+.|+++|..+ .|.|+..+++.+.+.+.+.+.++++.+.++...+ ..+++.+.+..++.|+|+
T Consensus       110 ~~--~l~~~~Lf~~~g~~WK~lR~~l-sP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~-~~~~~~dl~~~yT~DVI~  185 (499)
T KOG0158|consen  110 ED--PLSALNLFFLRGERWKRLRTKL-SPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGG-QEGEIKDLCARYTTDVIG  185 (499)
T ss_pred             CC--cccccCchhccCchHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc-CCccHHHHHHHHHHHHHh
Confidence            11  1123567788999999999997 9999999999999999999999999999863322 688999999999999999


Q ss_pred             HHHhccccCCC-cchhHHHHHHHHHHHH-hccccc----cccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041964          171 RAAFGMTCGEG-EAGGKLKKLLEELGEL-LGMFCV----GDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTR  244 (494)
Q Consensus       171 ~~~fG~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  244 (494)
                      .++||.+.+.. +....+.......... ...+.+    ...+|.+....       +.........+++.+.+....+.
T Consensus       186 ~~AfG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l-------~~~~~~~~~~~~~~~~v~~~v~~  258 (499)
T KOG0158|consen  186 SCAFGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPL-------RVKLFPEDVTDFFRKLVNSRVEQ  258 (499)
T ss_pred             HhhcccchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhh-------hcccChHHHHHHHHHHHHHHHHH
Confidence            99999998877 4445555544443332 111111    11122222110       11122233444444445444443


Q ss_pred             hhhhhhccCCcccccCcccHHHHHHHHhcC--CC-CCC-CCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHH
Q 041964          245 QRQDVATNGGVIVKEDQKDFLDVLLEIQND--GT-NGI-SMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMK  320 (494)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~--~~-~~~-~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~  320 (494)
                      ++.     ++    ..++|+++.|++++.+  .+ ... .+|.+||+++++.|++||.||||+++++++|+||+|||+|+
T Consensus       259 R~~-----~~----~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~  329 (499)
T KOG0158|consen  259 REK-----EN----IERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQD  329 (499)
T ss_pred             HHh-----cC----CCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHH
Confidence            322     11    5789999999998854  11 111 59999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceee-ceecCCCCEEEechhhcccCCCC
Q 041964          321 KVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVG-GYNIPAKSRVIINAWAIGRDPAS  399 (494)
Q Consensus       321 ~lr~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~-g~~ip~g~~v~~~~~~~~~d~~~  399 (494)
                      |||+||++++.....+|+|.+.+|+||++||+||||+||+++.. .|.+++|++++ ++.||+|+.|.++++++||||++
T Consensus       330 kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~-~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~  408 (499)
T KOG0158|consen  330 KLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPFL-NRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEY  408 (499)
T ss_pred             HHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhCCCcccc-cceecCceecCCCeEeCCCCEEEeecccccCCccc
Confidence            99999999977655599999999999999999999999999996 59999999999 99999999999999999999999


Q ss_pred             CCCCCCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccc
Q 041964          400 WEEPEKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITI  479 (494)
Q Consensus       400 ~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (494)
                      ||||++|+||||.+++.+ ..++.+|+|||.|||.|+|++||.+|+|++|++||++|+++..+.+  .+.......++++
T Consensus       409 ~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t--~~~~~~~~~~~~l  485 (499)
T KOG0158|consen  409 WPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTT--IIPLEGDPKGFTL  485 (499)
T ss_pred             CCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcc--cCcccCCccceee
Confidence            999999999999987654 3467899999999999999999999999999999999999987632  2222223347889


Q ss_pred             cccCCeEEEeeccC
Q 041964          480 HRKFPLVVVATPHR  493 (494)
Q Consensus       480 ~~~~~~~~~~~~~~  493 (494)
                      .+++++++++++|.
T Consensus       486 ~pk~gi~Lkl~~r~  499 (499)
T KOG0158|consen  486 SPKGGIWLKLEPRD  499 (499)
T ss_pred             ecCCceEEEEEeCC
Confidence            99999999999873


No 4  
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=6.4e-80  Score=608.85  Aligned_cols=474  Identities=41%  Similarity=0.793  Sum_probs=378.5

Q ss_pred             eeCCCCCCCCCCCCCCCccccccCCCCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccc
Q 041964            9 FTNPSNNNLPPSPSKLPIIGNLHQLGMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSS   88 (494)
Q Consensus         9 ~~~~~~~~~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~   88 (494)
                      .+.+++.+.||||+++|++||+..+...++.++.+|+++||++|++++|+.++|+|+||+++++|+.++...|+.++...
T Consensus        29 ~~~~~~~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~  108 (516)
T PLN02183         29 SRLRRRLPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANI  108 (516)
T ss_pred             hhccCCCCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCccc
Confidence            34455668899999999999998876667788999999999999999999999999999999999998877787776543


Q ss_pred             hhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHH
Q 041964           89 IARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNV  168 (494)
Q Consensus        89 ~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~  168 (494)
                      .......+.++++++.+|+.|+++|+++..+.|+.+.++.+.+. .+++..+++.|..   ..++++|+.+++..+++++
T Consensus       109 ~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~---~~~~~v~~~~~~~~~~~~v  184 (516)
T PLN02183        109 AISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSS---NIGKPVNIGELIFTLTRNI  184 (516)
T ss_pred             chhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHh---cCCCcEeHHHHHHHHHHHH
Confidence            33333222346788889999999999855789999999988885 5688999999963   2456899999999999999


Q ss_pred             HHHHHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041964          169 ICRAAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQD  248 (494)
Q Consensus       169 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  248 (494)
                      ++.++||.+++..  ..++.+.+..+............+|++.++. .....++..+..+.+.+++...++++.++....
T Consensus       185 i~~~~fG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  261 (516)
T PLN02183        185 TYRAAFGSSSNEG--QDEFIKILQEFSKLFGAFNVADFIPWLGWID-PQGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQ  261 (516)
T ss_pred             HHhHhhcCcccch--HHHHHHHHHHHHHHhCCccHHHhcchhHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999977543  3456666665555444333445566654331 112234556677788888888887766543221


Q ss_pred             hhccCCcccccCcccHHHHHHHHhcCCC---------CCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHH
Q 041964          249 VATNGGVIVKEDQKDFLDVLLEIQNDGT---------NGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTM  319 (494)
Q Consensus       249 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~---------~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q  319 (494)
                      ...+.   ......|+++.++++..+..         .+..++++++..++..+++||+|||+++++|++++|++||++|
T Consensus       262 ~~~~~---~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq  338 (516)
T PLN02183        262 NADND---SEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDL  338 (516)
T ss_pred             ccccc---cccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHH
Confidence            00000   00234689999998653311         1235999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCC
Q 041964          320 KKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPAS  399 (494)
Q Consensus       320 ~~lr~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~  399 (494)
                      +|+++|++++++.++.++++++++||||+|||+||||++|+++... |.+.+|++++||.|||||.|.++.+++|+||++
T Consensus       339 ~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~-r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~  417 (516)
T PLN02183        339 KRVQQELADVVGLNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLL-HETAEDAEVAGYFIPKRSRVMINAWAIGRDKNS  417 (516)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHhccChHHHHHHHHHhccCCCcccee-eeccCceeECCEEECCCCEEEEehhhhcCCccc
Confidence            9999999999987777899999999999999999999999999985 999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccCC-CCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCcc
Q 041964          400 WEEPEKFKPERFLDNCSS-FKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGIT  478 (494)
Q Consensus       400 ~~dp~~F~P~R~~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  478 (494)
                      |+||++|+||||++++.+ ...+...++|||.|+|+|+|++||++|+++++|+|+++|++++.++...++.+....++.+
T Consensus       418 ~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~  497 (516)
T PLN02183        418 WEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLT  497 (516)
T ss_pred             cCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccc
Confidence            999999999999975432 2234568999999999999999999999999999999999998776432334444455666


Q ss_pred             ccccCCeEEEeeccC
Q 041964          479 IHRKFPLVVVATPHR  493 (494)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (494)
                      .+..+++.+.+++|.
T Consensus       498 ~~~~~~~~~~~~~r~  512 (516)
T PLN02183        498 APRATRLVAVPTYRL  512 (516)
T ss_pred             cccCCCcEEEeecCC
Confidence            666668899888883


No 5  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=5.3e-79  Score=604.15  Aligned_cols=468  Identities=31%  Similarity=0.582  Sum_probs=368.5

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCC-C-cchhHHHHHHhcC-CcEEEecCCeeEEEecCHHHHHHHHHhccccccccccc
Q 041964           11 NPSNNNLPPSPSKLPIIGNLHQLGM-T-PHRSLTSLARLHG-PIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYS   87 (494)
Q Consensus        11 ~~~~~~~ppgP~~~p~~G~~~~~~~-~-~~~~~~~~~~~yG-~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~   87 (494)
                      ++++.+.||||+++|++||++.+.. . .+.++.+|.++|| ++|++++|+.++|+|+||+++++|+.++...|.+++..
T Consensus        52 ~~r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~  131 (543)
T PLN02971         52 NKKLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLT  131 (543)
T ss_pred             cCCCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcc
Confidence            3445679999999999999988733 3 3678999999999 79999999999999999999999999988889988764


Q ss_pred             chhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHH
Q 041964           88 SIARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNN  167 (494)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~  167 (494)
                      .....+..+..++++..+|+.|+++||++..+.++...++.+.+.+.++++.+++.+.+. ...++++|+.+.+..++++
T Consensus       132 ~~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~vd~~~~~~~~t~~  210 (543)
T PLN02971        132 YAQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNM-VKNSEPVDLRFVTRHYCGN  210 (543)
T ss_pred             cchhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCceehHHHHHHHHHH
Confidence            433323222234688889999999999985667777777788888888888888877653 2345679999999999999


Q ss_pred             HHHHHHhccccCCC------cchhHHHHHHHHHHHHhc---cccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHH
Q 041964          168 VICRAAFGMTCGEG------EAGGKLKKLLEELGELLG---MFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVI  238 (494)
Q Consensus       168 ~i~~~~fG~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i  238 (494)
                      ++++++||.++...      +...+....+..+.....   ...+.+.+|++..+. ..+..+...+..+.+.+++...+
T Consensus       211 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i  289 (543)
T PLN02971        211 AIKRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLD-LNGHEKIMRESSAIMDKYHDPII  289 (543)
T ss_pred             HHHHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhc-ccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999986321      011122233333322211   112334456554331 11223445556677788888888


Q ss_pred             HHHHHhhhhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHH
Q 041964          239 DHHMTRQRQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKT  318 (494)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~  318 (494)
                      +++++..+.     +.   .....|+++.|++..++.+ ...++++++.+++.++++||+|||+++++|++++|++||++
T Consensus       290 ~~~~~~~~~-----~~---~~~~~d~l~~ll~~~~~~~-~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pev  360 (543)
T PLN02971        290 DERIKMWRE-----GK---RTQIEDFLDIFISIKDEAG-QPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEI  360 (543)
T ss_pred             HHHHHHHhc-----cC---CCCCcCHHHHHHhhhcccC-CCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHH
Confidence            877654321     10   0224699999998654321 12499999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCC
Q 041964          319 MKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPA  398 (494)
Q Consensus       319 q~~lr~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~  398 (494)
                      |+|+|+||+++++.++.++++++++|||++|||+|+||+||+++..++|.+.+|++++||.|||||.|+++.+++|+||+
T Consensus       361 q~kl~~EI~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~  440 (543)
T PLN02971        361 LHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPK  440 (543)
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChh
Confidence            99999999999998888999999999999999999999999999877899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccccccCCC--CCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCC
Q 041964          399 SWEEPEKFKPERFLDNCSSF--KGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNG  476 (494)
Q Consensus       399 ~~~dp~~F~P~R~~~~~~~~--~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~  476 (494)
                      +|+||++|+||||++++++.  ...+.+++|||.|+|.|+|++||+.|+++++|+|+++|++++.++.  .+++....++
T Consensus       441 ~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~  518 (543)
T PLN02971        441 VWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSE--TRVELMESSH  518 (543)
T ss_pred             hCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCC--CCcchhhhcC
Confidence            99999999999999754321  1245689999999999999999999999999999999999987643  2455655566


Q ss_pred             ccccccCCeEEEeecc
Q 041964          477 ITIHRKFPLVVVATPH  492 (494)
Q Consensus       477 ~~~~~~~~~~~~~~~~  492 (494)
                       +...++++.+.+.+|
T Consensus       519 -~~~~~~~~~~~~~~~  533 (543)
T PLN02971        519 -DMFLSKPLVMVGELR  533 (543)
T ss_pred             -cccccccceeeeeec
Confidence             664555888888887


No 6  
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=1.3e-78  Score=599.60  Aligned_cols=469  Identities=39%  Similarity=0.779  Sum_probs=381.1

Q ss_pred             CCCCCCCCCCCCCccccccCCCCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhhh
Q 041964           13 SNNNLPPSPSKLPIIGNLHQLGMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIARK   92 (494)
Q Consensus        13 ~~~~~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~~   92 (494)
                      ++.+.||||.++|++||+..+..+++.++.+|+++||++|++++|+.++|+++||+++++++.++...|.+++.......
T Consensus        31 ~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~  110 (517)
T PLN02687         31 HKRPLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEH  110 (517)
T ss_pred             CCCCCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhh
Confidence            34468999999999999988877899999999999999999999999999999999999999988778888765444333


Q ss_pred             hcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHHH
Q 041964           93 LLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICRA  172 (494)
Q Consensus        93 ~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~~  172 (494)
                      +...+.+.+++.+|+.|+++||++..+.|+.+.++.+.+.+.+++.++++.|.+.  .+++++|+.+++..+++|+++.+
T Consensus       111 ~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~~~vd~~~~~~~~t~dvi~~~  188 (517)
T PLN02687        111 MAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQ--HGTAPVNLGQLVNVCTTNALGRA  188 (517)
T ss_pred             hccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHh--cCCCceeHHHHHHHHHHHHHHHH
Confidence            3333446778888999999999974378999999999999999999999999864  23468999999999999999999


Q ss_pred             HhccccCCC---cchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041964          173 AFGMTCGEG---EAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQDV  249 (494)
Q Consensus       173 ~fG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  249 (494)
                      +||.++...   +....+.+.+..+............+|++.++. .....+...+..+.+.+++...++++++..+.  
T Consensus       189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~--  265 (517)
T PLN02687        189 MVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLD-LQGVVGKMKRLHRRFDAMMNGIIEEHKAAGQT--  265 (517)
T ss_pred             HhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence            999987543   122345555555544333222234456544331 11223445566777888888888877654321  


Q ss_pred             hccCCcccccCcccHHHHHHHHhcCC---CCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHH
Q 041964          250 ATNGGVIVKEDQKDFLDVLLEIQNDG---TNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEV  326 (494)
Q Consensus       250 ~~~~~~~~~~~~~d~l~~ll~~~~~~---~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei  326 (494)
                         +    .....|+++.|+++..+.   ..+..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|+
T Consensus       266 ---~----~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei  338 (517)
T PLN02687        266 ---G----SEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEEL  338 (517)
T ss_pred             ---c----CcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence               0    033569999999875432   122469999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCCC
Q 041964          327 RRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKF  406 (494)
Q Consensus       327 ~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F  406 (494)
                      +++++.++.++++++.+||||+|||+||||++|+++..++|.+.+|++++|+.||+||.|.++.+.+|+||++|+||++|
T Consensus       339 ~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F  418 (517)
T PLN02687        339 DAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEF  418 (517)
T ss_pred             HHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccC
Confidence            99998878899999999999999999999999999987789999999999999999999999999999999999999999


Q ss_pred             CCcccccccCCC----CCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCcccccc
Q 041964          407 KPERFLDNCSSF----KGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRK  482 (494)
Q Consensus       407 ~P~R~~~~~~~~----~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (494)
                      +||||++++...    .....+++|||.|+|.|+|++||.+|+++++|+|+++|++++.++...+++++...+++++.+.
T Consensus       419 ~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (517)
T PLN02687        419 RPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRA  498 (517)
T ss_pred             CchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecC
Confidence            999999753211    1234689999999999999999999999999999999999987654323344444556777777


Q ss_pred             CCeEEEeeccC
Q 041964          483 FPLVVVATPHR  493 (494)
Q Consensus       483 ~~~~~~~~~~~  493 (494)
                      .++.+++++|-
T Consensus       499 ~~~~~~~~~R~  509 (517)
T PLN02687        499 VPLMVHPRPRL  509 (517)
T ss_pred             CCeEEeeccCC
Confidence            78999999884


No 7  
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=6.7e-78  Score=593.00  Aligned_cols=468  Identities=37%  Similarity=0.727  Sum_probs=368.3

Q ss_pred             CCCCCCCCCCCCCccccccCC-CCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhh
Q 041964           13 SNNNLPPSPSKLPIIGNLHQL-GMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIAR   91 (494)
Q Consensus        13 ~~~~~ppgP~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~   91 (494)
                      +..+.||||+++|++||++.+ ..++..++.+|+++||++|++++|+.++|+|+||+++++|+.++...|.+++......
T Consensus        26 ~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~  105 (502)
T PLN02966         26 KRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHE  105 (502)
T ss_pred             CCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccce
Confidence            445789999999999999888 4578999999999999999999999999999999999999998776677655432222


Q ss_pred             hhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHH
Q 041964           92 KLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICR  171 (494)
Q Consensus        92 ~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~  171 (494)
                      ....+.....+..+|+.|+++|+++..++|+.+.+..+.+.+.+++.++++.|.+. ..+++++|+.+++..+++|+++.
T Consensus       106 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~~vdl~~~~~~~t~dvi~~  184 (502)
T PLN02966        106 FISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKA-ADKSEVVDISELMLTFTNSVVCR  184 (502)
T ss_pred             eeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCceeHHHHHHHHHHHHHHH
Confidence            22222223445667999999999954789999999999999999999999999765 34566899999999999999999


Q ss_pred             HHhccccCCCc-chhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 041964          172 AAFGMTCGEGE-AGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQDVA  250 (494)
Q Consensus       172 ~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  250 (494)
                      ++||.+++..+ ....+.+.+...............+|++..+.......+...+..+...+++...+++..+....   
T Consensus       185 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  261 (502)
T PLN02966        185 QAFGKKYNEDGEEMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKRV---  261 (502)
T ss_pred             HHhCCccCccchHHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhcccc---
Confidence            99999886541 12234444443333333333334455443322122222233345556666777776655432211   


Q ss_pred             ccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Q 041964          251 TNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRIA  330 (494)
Q Consensus       251 ~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~~  330 (494)
                        .     ....|+++.|+++.++...+..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|+++++
T Consensus       262 --~-----~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~  334 (502)
T PLN02966        262 --K-----PETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYM  334 (502)
T ss_pred             --c-----cccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence              0     234689999998765432234689999999999999999999999999999999999999999999999999


Q ss_pred             CCC--CCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCC-CCCCCCC
Q 041964          331 GSK--SYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASW-EEPEKFK  407 (494)
Q Consensus       331 ~~~--~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~dp~~F~  407 (494)
                      +.+  +.++++++++||||+|||+|+||+||+++..++|.+.+|++++||.||+||.|.++++++|+||++| +||++|+
T Consensus       335 ~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~  414 (502)
T PLN02966        335 KEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFR  414 (502)
T ss_pred             cccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCC
Confidence            753  3589999999999999999999999999987679999999999999999999999999999999999 9999999


Q ss_pred             CcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeEE
Q 041964          408 PERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLVV  487 (494)
Q Consensus       408 P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (494)
                      ||||++++.+....+..++|||.|+|+|+|++||.+|+++++|+|+++|+|++.++...++++.+...|+...++..+.+
T Consensus       415 PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (502)
T PLN02966        415 PERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKL  494 (502)
T ss_pred             hhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEE
Confidence            99999754322234568999999999999999999999999999999999998776544455656666776655556766


Q ss_pred             Eeec
Q 041964          488 VATP  491 (494)
Q Consensus       488 ~~~~  491 (494)
                      ..++
T Consensus       495 ~~~~  498 (502)
T PLN02966        495 VPEK  498 (502)
T ss_pred             EEEe
Confidence            6554


No 8  
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=6.2e-78  Score=591.07  Aligned_cols=465  Identities=35%  Similarity=0.704  Sum_probs=377.8

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhh
Q 041964           12 PSNNNLPPSPSKLPIIGNLHQLGMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIAR   91 (494)
Q Consensus        12 ~~~~~~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~   91 (494)
                      .++.+.||||+++|++||++.+..+++.++.+++++||++|++++|+.++|+|+||+++++++.++...|.+++......
T Consensus        27 ~~~~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~  106 (504)
T PLN00110         27 KPSRKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGAT  106 (504)
T ss_pred             cccCCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchh
Confidence            45667899999999999998887778999999999999999999999999999999999999998887888877644333


Q ss_pred             hhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHH
Q 041964           92 KLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICR  171 (494)
Q Consensus        92 ~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~  171 (494)
                      ....+.++++++.+|+.|+++|+++..+.|+.++++.+.+.+.+++.++++.+.+. ..+++++|+.+++..+++|+++.
T Consensus       107 ~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~-~~~g~~~~~~~~~~~~~~~vi~~  185 (504)
T PLN00110        107 HLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLEL-SQRGEPVVVPEMLTFSMANMIGQ  185 (504)
T ss_pred             hhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHh-ccCCCcEeHHHHHHHHHHHHHHH
Confidence            33333456788888999999999974468999999999999999999999999765 34567899999999999999999


Q ss_pred             HHhccccCCC--cchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041964          172 AAFGMTCGEG--EAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQDV  249 (494)
Q Consensus       172 ~~fG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  249 (494)
                      ++||.++...  ....++.+.+...........+...+|++.++. .....+...+..+.+.+++...++++++....  
T Consensus       186 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  262 (504)
T PLN00110        186 VILSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMD-IQGIERGMKHLHKKFDKLLTRMIEEHTASAHE--  262 (504)
T ss_pred             HHhCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhC-cchHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence            9999987221  123446666655544333333334556544321 11223445556677777877777766543211  


Q ss_pred             hccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 041964          250 ATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRI  329 (494)
Q Consensus       250 ~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~  329 (494)
                         .     ....|+++.|+++..+. .+..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++++
T Consensus       263 ---~-----~~~~d~l~~ll~~~~~~-~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~  333 (504)
T PLN00110        263 ---R-----KGNPDFLDVVMANQENS-TGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQV  333 (504)
T ss_pred             ---c-----ccCCChhhHHhhccccc-CCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence               0     23468999999764321 13469999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCCCCCc
Q 041964          330 AGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFKPE  409 (494)
Q Consensus       330 ~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~  409 (494)
                      ++.++.++++++++||||+|||+||||++|+++...+|.+.+|++++||.||+||.|.++++++|+||++|+||++|+||
T Consensus       334 ~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~Pe  413 (504)
T PLN00110        334 IGRNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPE  413 (504)
T ss_pred             hCCCCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcc
Confidence            98877899999999999999999999999999987789999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCC---CCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeE
Q 041964          410 RFLDNCSSFK---GNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLV  486 (494)
Q Consensus       410 R~~~~~~~~~---~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (494)
                      ||++++....   .+...++|||.|+|.|+|++||+.|+++++|+|+++|++++.++.   +.++....++++.++.++.
T Consensus       414 Rfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~  490 (504)
T PLN00110        414 RFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV---ELNMDEAFGLALQKAVPLS  490 (504)
T ss_pred             cccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC---ccCcccccccccccCCCce
Confidence            9996532211   123579999999999999999999999999999999999986653   3334345678888888999


Q ss_pred             EEeecc
Q 041964          487 VVATPH  492 (494)
Q Consensus       487 ~~~~~~  492 (494)
                      +++++|
T Consensus       491 ~~~~~r  496 (504)
T PLN00110        491 AMVTPR  496 (504)
T ss_pred             EeeccC
Confidence            999887


No 9  
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=7.4e-78  Score=595.54  Aligned_cols=474  Identities=36%  Similarity=0.667  Sum_probs=381.2

Q ss_pred             eCCCCCCCCCCCCCCCccccccCCCCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccch
Q 041964           10 TNPSNNNLPPSPSKLPIIGNLHQLGMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSI   89 (494)
Q Consensus        10 ~~~~~~~~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~   89 (494)
                      +.+++.+.||||+++|++||+..+..+++.++.+++++||++|++++|+.++|+++||+++++|+.++.+.|++++....
T Consensus        26 ~~~~~~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~  105 (514)
T PLN03112         26 SMRKSLRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLA  105 (514)
T ss_pred             cccCCCCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCccc
Confidence            34556689999999999999988877889999999999999999999999999999999999999988878887765432


Q ss_pred             hhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHH
Q 041964           90 ARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVI  169 (494)
Q Consensus        90 ~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i  169 (494)
                      .....++.+.+++..+|+.|+++||++..+.|+.++++.+.+.+.++++.+++.+.+. ..+++++|+.+.+..++++++
T Consensus       106 ~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~-~~~~~~vd~~~~~~~~~~~vi  184 (514)
T PLN03112        106 AVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEA-AQTGKPVNLREVLGAFSMNNV  184 (514)
T ss_pred             ceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHh-hccCCeeeHHHHHHHHHHHHH
Confidence            2222233345667788999999999965678999999999999999999999988754 344568999999999999999


Q ss_pred             HHHHhccccCCCc-----chhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041964          170 CRAAFGMTCGEGE-----AGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTR  244 (494)
Q Consensus       170 ~~~~fG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  244 (494)
                      +.++||.++...+     ....+.+.+..+............+|++.++. .....+...+..+.+.+++...++++++.
T Consensus       185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  263 (514)
T PLN03112        185 TRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLD-PYGCEKKMREVEKRVDEFHDKIIDEHRRA  263 (514)
T ss_pred             HHHHcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcC-cccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999874321     12334444444433322222333455544321 11223455667777888888888876654


Q ss_pred             hhhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHH
Q 041964          245 QRQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQE  324 (494)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~  324 (494)
                      .+..    .   ......|+++.|+++..+++ +..++++++.+++..+++||+|||+++++|++++|++||++|+|+|+
T Consensus       264 ~~~~----~---~~~~~~d~l~~ll~~~~~~~-~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~  335 (514)
T PLN03112        264 RSGK----L---PGGKDMDFVDVLLSLPGENG-KEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQE  335 (514)
T ss_pred             hccc----c---cCCccchHHHHHHHhhcccc-ccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHH
Confidence            3210    0   00234699999998654321 23589999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCC
Q 041964          325 EVRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPE  404 (494)
Q Consensus       325 Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~  404 (494)
                      |++++++.++.++++++.+|||++|||+||+|+||+++...+|.+.+|++++|+.||+||.|.++++.+|+||++|+||+
T Consensus       336 Ei~~~~~~~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~  415 (514)
T PLN03112        336 ELDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVE  415 (514)
T ss_pred             HHHHhcCCCCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChh
Confidence            99999988788999999999999999999999999999876799999999999999999999999999999999999999


Q ss_pred             CCCCcccccccCC---C-CCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCcccc
Q 041964          405 KFKPERFLDNCSS---F-KGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIH  480 (494)
Q Consensus       405 ~F~P~R~~~~~~~---~-~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (494)
                      +|+||||.++.+.   . .+...+++|||.|+|+|+|++||++|+++++++|+++|++++.++...+++.....++++++
T Consensus       416 ~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~  495 (514)
T PLN03112        416 EFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMP  495 (514)
T ss_pred             hcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccc
Confidence            9999998754211   1 12346899999999999999999999999999999999999876543334455556678888


Q ss_pred             ccCCeEEEeeccC
Q 041964          481 RKFPLVVVATPHR  493 (494)
Q Consensus       481 ~~~~~~~~~~~~~  493 (494)
                      +++++.++++||.
T Consensus       496 ~~~~~~~~~~~r~  508 (514)
T PLN03112        496 KAKPLRAVATPRL  508 (514)
T ss_pred             cCCCeEEEeecCC
Confidence            8889999999984


No 10 
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=1e-76  Score=583.23  Aligned_cols=451  Identities=27%  Similarity=0.419  Sum_probs=356.1

Q ss_pred             CCCCCCCCCCCCCccccccCCCCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhhh
Q 041964           13 SNNNLPPSPSKLPIIGNLHQLGMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIARK   92 (494)
Q Consensus        13 ~~~~~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~~   92 (494)
                      ...+.+|||+++|++||+..+..+++..+.+++++||++|++++|+.++|+++||+++++|+.++...|.+++.......
T Consensus        26 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~  105 (482)
T PTZ00404         26 IHKNELKGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKH  105 (482)
T ss_pred             ccCCCCCCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeee
Confidence            44678899999999999988877899999999999999999999999999999999999999987666776655433221


Q ss_pred             hcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHHH
Q 041964           93 LLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICRA  172 (494)
Q Consensus        93 ~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~~  172 (494)
                      ..  .+.++++.+|+.|+++|+++ .+.|+.+.++.+.+.+.+++.++++.|.+. .++++.+|+.+++..+++|+++.+
T Consensus       106 ~~--~~~~l~~~~g~~w~~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~~vd~~~~~~~~~~dvi~~~  181 (482)
T PTZ00404        106 GT--FYHGIVTSSGEYWKRNREIV-GKAMRKTNLKHIYDLLDDQVDVLIESMKKI-ESSGETFEPRYYLTKFTMSAMFKY  181 (482)
T ss_pred             ec--cCCceeccChHHHHHHHHHH-HHHHhhhccccHHHHHHHHHHHHHHHHHHH-HhcCCccCHHHHHHHHHHHHHHHH
Confidence            11  13456677999999999997 899999999999999999999999999754 334567999999999999999999


Q ss_pred             HhccccCCCcc-----hhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041964          173 AFGMTCGEGEA-----GGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQ  247 (494)
Q Consensus       173 ~fG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  247 (494)
                      +||.+++..+.     ...+.+.+..+............++++..+  .........+..+.+.+++.+.++++++..+.
T Consensus       182 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (482)
T PTZ00404        182 IFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPL--YYQYLEHTDKNFKKIKKFIKEKYHEHLKTIDP  259 (482)
T ss_pred             HhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            99998764311     123444444443332222222222222211  00111222344556666666666554432211


Q ss_pred             hhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 041964          248 DVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVR  327 (494)
Q Consensus       248 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~  327 (494)
                                 ....|+++.|+++..+.   .....+++++++..+++||+|||+++++|++++|++||++|+|+++|++
T Consensus       260 -----------~~~~dll~~ll~~~~~~---~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~  325 (482)
T PTZ00404        260 -----------EVPRDLLDLLIKEYGTN---TDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIK  325 (482)
T ss_pred             -----------CCcccHHHHHHHHhccC---CcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence                       23569999999875321   1122345889999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCccccccccccccee-eceecCCCCEEEechhhcccCCCCCCCCCCC
Q 041964          328 RIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQV-GGYNIPAKSRVIINAWAIGRDPASWEEPEKF  406 (494)
Q Consensus       328 ~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l-~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F  406 (494)
                      ++++.++.++++++.+||||+|||+|||||||+++..++|.+.+|+++ +||.||+||.|.++.+++|+||++|+||++|
T Consensus       326 ~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F  405 (482)
T PTZ00404        326 STVNGRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQF  405 (482)
T ss_pred             HHhcCCCCCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCcccc
Confidence            999877778999999999999999999999999997668999999999 9999999999999999999999999999999


Q ss_pred             CCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeE
Q 041964          407 KPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLV  486 (494)
Q Consensus       407 ~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (494)
                      +||||++..     .+.+++|||.|+|+|+|++||.+|+++++++|+++|++++.+++   +.......++++. +.++.
T Consensus       406 ~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~-~~~~~  476 (482)
T PTZ00404        406 DPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGK---KIDETEEYGLTLK-PNKFK  476 (482)
T ss_pred             CccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCC---CCCcccccceeec-CCCce
Confidence            999999642     35689999999999999999999999999999999999986543   2222334566666 45789


Q ss_pred             EEeecc
Q 041964          487 VVATPH  492 (494)
Q Consensus       487 ~~~~~~  492 (494)
                      |++++|
T Consensus       477 v~~~~R  482 (482)
T PTZ00404        477 VLLEKR  482 (482)
T ss_pred             eeeecC
Confidence            988876


No 11 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=1.2e-76  Score=585.77  Aligned_cols=468  Identities=33%  Similarity=0.585  Sum_probs=357.9

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCC-cchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchh
Q 041964           12 PSNNNLPPSPSKLPIIGNLHQLGMT-PHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIA   90 (494)
Q Consensus        12 ~~~~~~ppgP~~~p~~G~~~~~~~~-~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~   90 (494)
                      .++.+.||||+++|++|++..+..+ .+..+.+|+++||++|++++|+.++|+|+||+++++|+.++...|.+++.....
T Consensus        26 ~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~  105 (503)
T PLN02394         26 GKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVF  105 (503)
T ss_pred             cCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchH
Confidence            4567899999999999999888544 578999999999999999999999999999999999999887777766544443


Q ss_pred             hhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHH
Q 041964           91 RKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVIC  170 (494)
Q Consensus        91 ~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~  170 (494)
                      ..+...+.+.+++.+|+.|+++||.+..++|+.+.++.+.+.+.++++++++.|.+....+++.+|+.+.+..+++|+++
T Consensus       106 ~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~  185 (503)
T PLN02394        106 DIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMY  185 (503)
T ss_pred             hHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHH
Confidence            43333344667888899999999997458999999999999999999999999986422234569999999999999999


Q ss_pred             HHHhccccCCCcc--hhHHHHHHHHHHHHhcc--ccccccccchHhhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 041964          171 RAAFGMTCGEGEA--GGKLKKLLEELGELLGM--FCVGDFIPWLAFLDKLTGLDARVERVFKHLDN-FLNYVIDHHMTRQ  245 (494)
Q Consensus       171 ~~~fG~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~  245 (494)
                      .++||.+++..+.  ...+.............  ......+|++...  .....+........... +....++++++..
T Consensus       186 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  263 (503)
T PLN02394        186 RMMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPF--LRGYLKICQDVKERRLALFKDYFVDERKKLM  263 (503)
T ss_pred             HHHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998865421  11122222222221111  1122334443321  11111111222222222 2233455444322


Q ss_pred             hhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHH
Q 041964          246 RQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEE  325 (494)
Q Consensus       246 ~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~E  325 (494)
                      +...   ..   .....|+++.|+++..+    ..++++++..++..+++||+|||+++++|++++|++||++|+|||+|
T Consensus       264 ~~~~---~~---~~~~~d~l~~ll~~~~~----~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~E  333 (503)
T PLN02394        264 SAKG---MD---KEGLKCAIDHILEAQKK----GEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDE  333 (503)
T ss_pred             hhcc---CC---cchhhhHHHHHHhcccc----CCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            1100   00   02346899999987643    24899999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCC
Q 041964          326 VRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEK  405 (494)
Q Consensus       326 i~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~  405 (494)
                      |+++++.++.++++++++||||+|||+|+||++|+++...+|.+.+|++++||.||+||.|.++++.+|+||++|+||++
T Consensus       334 i~~v~~~~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~  413 (503)
T PLN02394        334 LDTVLGPGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEE  413 (503)
T ss_pred             HHHHhCCCCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccc
Confidence            99999877778999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             CCCcccccccCC--CCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCC-cccccc
Q 041964          406 FKPERFLDNCSS--FKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNG-ITIHRK  482 (494)
Q Consensus       406 F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  482 (494)
                      |+||||++++++  .+....+++|||.|+|+|+|++||.+|+++++|+|+++|++++.++.  ++++....+| +.+..+
T Consensus       414 F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~  491 (503)
T PLN02394        414 FRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQ--SKIDVSEKGGQFSLHIA  491 (503)
T ss_pred             cCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCC--CcCccccccCceeeccC
Confidence            999999975432  12235689999999999999999999999999999999999987654  1244443453 455344


Q ss_pred             CCeEEEeeccC
Q 041964          483 FPLVVVATPHR  493 (494)
Q Consensus       483 ~~~~~~~~~~~  493 (494)
                      .++++++.||-
T Consensus       492 ~~~~~~~~~r~  502 (503)
T PLN02394        492 KHSTVVFKPRS  502 (503)
T ss_pred             CCceEEeecCC
Confidence            47888888884


No 12 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=2.2e-75  Score=576.98  Aligned_cols=476  Identities=25%  Similarity=0.419  Sum_probs=365.6

Q ss_pred             CCCCCCCCCCCCCCCccccccCCC---CCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhccccccccccc
Q 041964           11 NPSNNNLPPSPSKLPIIGNLHQLG---MTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYS   87 (494)
Q Consensus        11 ~~~~~~~ppgP~~~p~~G~~~~~~---~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~   87 (494)
                      +++..++||||+++|++||+..+.   .+++.++.+|+++||++|++++|+.++|+++||+++++++.++...|++++..
T Consensus        30 ~~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~  109 (519)
T PLN00168         30 GKKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAV  109 (519)
T ss_pred             CCCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcc
Confidence            345567899999999999997653   35788899999999999999999999999999999999999988888887664


Q ss_pred             chhhhhcCCCCceEe-ccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHH
Q 041964           88 SIARKLLYDYRDLSW-SPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTN  166 (494)
Q Consensus        88 ~~~~~~~~~~~~~~~-~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~  166 (494)
                      .....+. .+.+.+. ..+|+.|+++||.+..++|+.++++.+.+.+.++++++++.|.+. ...++.+|+.+.+..++.
T Consensus       110 ~~~~~~~-~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~~~v~~~~~~~~~~~  187 (519)
T PLN00168        110 ASSRLLG-ESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRRE-AEDAAAPRVVETFQYAMF  187 (519)
T ss_pred             cchhhhc-cCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcCHHHHHHHHHH
Confidence            3322222 1122232 368999999998545899999999999999999999999999864 333456899999999999


Q ss_pred             HHHHHHHhccccCCCcchhHHHHHHHHHHHHh-ccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041964          167 NVICRAAFGMTCGEGEAGGKLKKLLEELGELL-GMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQ  245 (494)
Q Consensus       167 ~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  245 (494)
                      ++++.++||.+++.. ....+......+.... ....+...+|++.... .....+...+..+.+.+++..+++++++..
T Consensus       188 ~ii~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  265 (519)
T PLN00168        188 CLLVLMCFGERLDEP-AVRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHL-FRGRLQKALALRRRQKELFVPLIDARREYK  265 (519)
T ss_pred             HHHHHHHcCCCcChh-hHHHHHHHHHHHHHHhcCCCCHHHhCcchhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999987542 1122333333222111 1122234445433211 111223455677788888888888776543


Q ss_pred             hhhhhccCCc-ccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHH
Q 041964          246 RQDVATNGGV-IVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQE  324 (494)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~  324 (494)
                      ......+... .......|+++.|++.......+..++++++.+++.++++||+|||+++++|++++|++||++|+|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~  345 (519)
T PLN00168        266 NHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHD  345 (519)
T ss_pred             hhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            1100000000 000124689999998654322234699999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCC-CCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCC
Q 041964          325 EVRRIAGSK-SYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEP  403 (494)
Q Consensus       325 Ei~~~~~~~-~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp  403 (494)
                      ||+++++.+ +.++++++++||||+|||+||||+||+++...+|.+.+|++++||.||+||.|.++.+.+|+||++|+||
T Consensus       346 Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p  425 (519)
T PLN00168        346 EIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERP  425 (519)
T ss_pred             HHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCc
Confidence            999999864 5689999999999999999999999999988789999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCC-----CCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCcc
Q 041964          404 EKFKPERFLDNCSS-----FKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGIT  478 (494)
Q Consensus       404 ~~F~P~R~~~~~~~-----~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  478 (494)
                      ++|+||||++.+..     .......++|||.|+|+|+|++||.+|+++++++|+++|+|++.++.   +.+.....+++
T Consensus       426 ~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~  502 (519)
T PLN00168        426 MEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD---EVDFAEKREFT  502 (519)
T ss_pred             cccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC---cCChhhhceeE
Confidence            99999999974321     11234589999999999999999999999999999999999986653   22222223455


Q ss_pred             ccccCCeEEEeeccC
Q 041964          479 IHRKFPLVVVATPHR  493 (494)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (494)
                      ..+++++.+++++|.
T Consensus       503 ~~~~~~~~~~~~~R~  517 (519)
T PLN00168        503 TVMAKPLRARLVPRR  517 (519)
T ss_pred             EeecCCcEEEEEecc
Confidence            556667888888874


No 13 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=4.2e-75  Score=567.81  Aligned_cols=453  Identities=27%  Similarity=0.475  Sum_probs=359.7

Q ss_pred             CCCCCCCCccccccCCC-CCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhhhhcCC
Q 041964           18 PPSPSKLPIIGNLHQLG-MTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIARKLLYD   96 (494)
Q Consensus        18 ppgP~~~p~~G~~~~~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   96 (494)
                      ||||+++|++||++++. .+++.++.+|+++||++|++++|+.++|+|+||+++++|+.++...|.+++.......+..+
T Consensus         1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~   80 (466)
T PLN02655          1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD   80 (466)
T ss_pred             CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence            78999999999998884 56899999999999999999999999999999999999999988888887654443333222


Q ss_pred             CCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcC-CCCCceehHHHHHHHHHHHHHHHHhc
Q 041964           97 YRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSC-SGSSPIDLSEILISLTNNVICRAAFG  175 (494)
Q Consensus        97 ~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~-~~~~~vd~~~~~~~~~~~~i~~~~fG  175 (494)
                      +....+..+|+.|+++||.+..+.|+...++.+.+.+.+.+..+++.+.+... ..++++|+.+.+..+++|+++.++||
T Consensus        81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG  160 (466)
T PLN02655         81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALG  160 (466)
T ss_pred             CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhc
Confidence            22233334589999999877677888888888999999999999988875422 24568999999999999999999999


Q ss_pred             cccCCCc--c-h------hHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041964          176 MTCGEGE--A-G------GKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQR  246 (494)
Q Consensus       176 ~~~~~~~--~-~------~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  246 (494)
                      .+++...  . .      ..+...+..+..........+.+|++.++. .....+...+......+++..++++++++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  239 (466)
T PLN02655        161 EDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIP-NKSFETRVQTTEFRRTAVMKALIKQQKKRIA  239 (466)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9876431  0 0      112233333333322222334556544332 1112223333344455677777776665432


Q ss_pred             hhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHH
Q 041964          247 QDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEV  326 (494)
Q Consensus       247 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei  326 (494)
                      .     +     ....|+++.|++..      ..++++++.+++.++++||+|||+++++|++++|++||++|+++|+|+
T Consensus       240 ~-----~-----~~~~d~l~~ll~~~------~~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei  303 (466)
T PLN02655        240 R-----G-----EERDCYLDFLLSEA------THLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREI  303 (466)
T ss_pred             C-----C-----CCcccHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            1     1     23458999999764      248999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCCC
Q 041964          327 RRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKF  406 (494)
Q Consensus       327 ~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F  406 (494)
                      +++++.+. ++++++++||||+||++||||++|+++...+|.+.+|++++|+.||+||.|+++.+++|+||++|+||++|
T Consensus       304 ~~~~~~~~-~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F  382 (466)
T PLN02655        304 REVCGDER-VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEW  382 (466)
T ss_pred             HHHhCCCC-CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhcc
Confidence            99998755 99999999999999999999999999988789999999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeE
Q 041964          407 KPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLV  486 (494)
Q Consensus       407 ~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (494)
                      +||||++++... .+...++|||.|+|.|||++||..|+++++++|+++|++++.++.. +   .....++++.+++++.
T Consensus       383 ~PeR~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~-~---~~~~~~~~~~~~~~~~  457 (466)
T PLN02655        383 DPERFLGEKYES-ADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE-E---KEDTVQLTTQKLHPLH  457 (466)
T ss_pred             CccccCCCCccc-CCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc-c---ccchhheeEeecCCcE
Confidence            999999764321 2346899999999999999999999999999999999999866532 1   1234577888888999


Q ss_pred             EEeeccC
Q 041964          487 VVATPHR  493 (494)
Q Consensus       487 ~~~~~~~  493 (494)
                      +++++|.
T Consensus       458 ~~~~~r~  464 (466)
T PLN02655        458 AHLKPRG  464 (466)
T ss_pred             EEEeecC
Confidence            9998885


No 14 
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=4.7e-75  Score=575.83  Aligned_cols=453  Identities=23%  Similarity=0.380  Sum_probs=356.7

Q ss_pred             CCCCCCCCCCCCccccccCCC-------------------CCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHH
Q 041964           14 NNNLPPSPSKLPIIGNLHQLG-------------------MTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIM   74 (494)
Q Consensus        14 ~~~~ppgP~~~p~~G~~~~~~-------------------~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~   74 (494)
                      .+..||||+++|++||++.+.                   .+....+.+|+++||++|++++|+.++|+++||+++++|+
T Consensus        40 ~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il  119 (516)
T PLN02290         40 ERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELL  119 (516)
T ss_pred             HHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHH
Confidence            456799999999999997763                   2233457899999999999999999999999999999999


Q ss_pred             Hhcccccccccccch--hhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCC
Q 041964           75 KTHDIIFANRPYSSI--ARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGS  152 (494)
Q Consensus        75 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~  152 (494)
                      .++. .+..++....  .....  + ++++..+|+.|+++||++ .+.|+..+++.+.+.+.++++++++.|.+....++
T Consensus       120 ~~~~-~~~~r~~~~~~~~~~~~--g-~~l~~~~g~~Wk~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~  194 (516)
T PLN02290        120 TKYN-TVTGKSWLQQQGTKHFI--G-RGLLMANGADWYHQRHIA-APAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQ  194 (516)
T ss_pred             hcCC-CCCCCcchhhhHHHHHh--c-CCccccCchHHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8874 3444443221  11111  2 346667899999999996 89999999999999999999999999986422233


Q ss_pred             CceehHHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHH
Q 041964          153 SPIDLSEILISLTNNVICRAAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDN  232 (494)
Q Consensus       153 ~~vd~~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~  232 (494)
                      +++|+.+++..+++++++.++||.++...   +++.+.+..+............+|++.++  .....+...+..+.+.+
T Consensus       195 ~~vd~~~~~~~~~~~vi~~~~fG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--p~~~~~~~~~~~~~~~~  269 (516)
T PLN02290        195 TEVEIGEYMTRLTADIISRTEFDSSYEKG---KQIFHLLTVLQRLCAQATRHLCFPGSRFF--PSKYNREIKSLKGEVER  269 (516)
T ss_pred             ceEEhHHHHHHHHHHHHHHHHcCCccccc---hHHHHHHHHHHHHHHHhhhhhcCchhhhC--CChhHHHHHHHHHHHHH
Confidence            58999999999999999999999987543   22333333333222111111223443332  11223445566778888


Q ss_pred             HHHHHHHHHHHhhhhhhhccCCcccccCcccHHHHHHHHhcCC-CCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 041964          233 FLNYVIDHHMTRQRQDVATNGGVIVKEDQKDFLDVLLEIQNDG-TNGISMARENMKAIILDMFAGGTDTTYTALEWALTE  311 (494)
Q Consensus       233 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~-~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~  311 (494)
                      ++.+.++++++..+.+.   .    .....|+++.++++..+. ..+..++++++.+++..+++||+|||+++++|++++
T Consensus       270 ~~~~~i~~~~~~~~~~~---~----~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~  342 (516)
T PLN02290        270 LLMEIIQSRRDCVEIGR---S----SSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLML  342 (516)
T ss_pred             HHHHHHHHHHHHhhccc---C----CCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            88888887765432210   0    123579999999865432 112358899999999999999999999999999999


Q ss_pred             HHhCcHHHHHHHHHHHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechh
Q 041964          312 LIKHSKTMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAW  391 (494)
Q Consensus       312 L~~~P~~q~~lr~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~  391 (494)
                      |++||++|+|+|+|++++++.+ .++++++++||||+|||+||||++|+++. ++|.+.+|++++||.||+||.|.++.+
T Consensus       343 L~~~P~vq~kl~~Ei~~v~~~~-~~~~~~l~~lpYl~avi~EtlRl~p~~~~-~~R~~~~d~~i~g~~IP~Gt~V~~~~~  420 (516)
T PLN02290        343 LASNPTWQDKVRAEVAEVCGGE-TPSVDHLSKLTLLNMVINESLRLYPPATL-LPRMAFEDIKLGDLHIPKGLSIWIPVL  420 (516)
T ss_pred             HhcCHHHHHHHHHHHHHHhCCC-CCCHHHHhcChHHHHHHHHHHHcCCCccc-cceeecCCeeECCEEECCCCEEEecHH
Confidence            9999999999999999999875 78999999999999999999999999986 479999999999999999999999999


Q ss_pred             hcccCCCCC-CCCCCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCc
Q 041964          392 AIGRDPASW-EEPEKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLD  470 (494)
Q Consensus       392 ~~~~d~~~~-~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~  470 (494)
                      ++|+||++| +||++|+||||++.+.   .....++|||.|+|.|+|++||++|+++++++|+++|++++.++..     
T Consensus       421 ~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~-----  492 (516)
T PLN02290        421 AIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR-----  492 (516)
T ss_pred             HhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc-----
Confidence            999999999 8999999999995421   1345799999999999999999999999999999999999876531     


Q ss_pred             ccccCCccccccCCeEEEeeccC
Q 041964          471 VDESNGITIHRKFPLVVVATPHR  493 (494)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~  493 (494)
                      .....++++.|++++.+++++|.
T Consensus       493 ~~~~~~~~~~p~~~~~~~~~~~~  515 (516)
T PLN02290        493 HAPVVVLTIKPKYGVQVCLKPLN  515 (516)
T ss_pred             cCccceeeecCCCCCeEEEEeCC
Confidence            11223578888899999999885


No 15 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=4.8e-73  Score=557.18  Aligned_cols=465  Identities=26%  Similarity=0.496  Sum_probs=350.7

Q ss_pred             CCCCCCCCCCCCccccccCCC-CCcc-hhHHHHHHhc-CCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchh
Q 041964           14 NNNLPPSPSKLPIIGNLHQLG-MTPH-RSLTSLARLH-GPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIA   90 (494)
Q Consensus        14 ~~~~ppgP~~~p~~G~~~~~~-~~~~-~~~~~~~~~y-G~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~   90 (494)
                      ..++||||+++|++||++++. ..+. .++.++.++| |+||++++|+.++|+|+||+++++++.++...|++++.....
T Consensus        38 ~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~  117 (534)
T PLN03018         38 SRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM  117 (534)
T ss_pred             CCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence            345899999999999998873 3343 4566777776 799999999999999999999999999988888888765444


Q ss_pred             hhhcCCCCceEeccCChhHHHHHhHhhhccC-cHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHH
Q 041964           91 RKLLYDYRDLSWSPYGEYWRQMRSICVMRLL-STRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVI  169 (494)
Q Consensus        91 ~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f-~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i  169 (494)
                      ..+..++.+.++..+|+.|+++|+++ .+.| +......+.+.+..++.++++.+.+. ...++++|+.+++..++++++
T Consensus       118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~vd~~~~~~~~t~~vi  195 (534)
T PLN03018        118 ETIGDNYKSMGTSPYGEQFMKMKKVI-TTEIMSVKTLNMLEAARTIEADNLIAYIHSM-YQRSETVDVRELSRVYGYAVT  195 (534)
T ss_pred             hhhccCCCceEecCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCceeHHHHHHHHHHHHH
Confidence            33332223455566699999999997 5554 44444555556667789999999854 234457999999999999999


Q ss_pred             HHHHhccccCCCc----chhH----HHHHHHHHHHHhc---ccccccccc-chHhhhhhcchhHHHHHHHHHHHHHHHHH
Q 041964          170 CRAAFGMTCGEGE----AGGK----LKKLLEELGELLG---MFCVGDFIP-WLAFLDKLTGLDARVERVFKHLDNFLNYV  237 (494)
Q Consensus       170 ~~~~fG~~~~~~~----~~~~----~~~~~~~~~~~~~---~~~~~~~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (494)
                      +.++||.++...+    ....    +...+........   .....+.+| |+.... ......+.......+.+++...
T Consensus       196 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  274 (534)
T PLN03018        196 MRMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWN-IDGQEERAKVNVNLVRSYNNPI  274 (534)
T ss_pred             HHHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhc-ccchHHHHHHHHHHHHHHHHHH
Confidence            9999999875320    0111    2212222222111   111112233 322110 1122234444566777888888


Q ss_pred             HHHHHHhhhhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcH
Q 041964          238 IDHHMTRQRQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSK  317 (494)
Q Consensus       238 i~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~  317 (494)
                      ++++++.....    .+   .....|+++.|+++..+.+ ...++++++++++..+++||+|||+++++|++++|++||+
T Consensus       275 i~~~~~~~~~~----~~---~~~~~d~l~~ll~~~~~~~-~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~  346 (534)
T PLN03018        275 IDERVELWREK----GG---KAAVEDWLDTFITLKDQNG-KYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPE  346 (534)
T ss_pred             HHHHHHHhhhc----cC---CCCcccHHHHHHHhhcccC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH
Confidence            88776543210    00   0224689999998654322 1148999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCC
Q 041964          318 TMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDP  397 (494)
Q Consensus       318 ~q~~lr~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~  397 (494)
                      +|+|+++||+++++.++.++.+++.+||||+|||+||||++|+++...+|++.+|++++||.||+||.|+++.+++|+||
T Consensus       347 ~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp  426 (534)
T PLN03018        347 ILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNP  426 (534)
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCc
Confidence            99999999999998878899999999999999999999999999988779999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccccccCCC-----CCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCccc
Q 041964          398 ASWEEPEKFKPERFLDNCSSF-----KGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVD  472 (494)
Q Consensus       398 ~~~~dp~~F~P~R~~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~  472 (494)
                      ++|+||++|+||||++++++.     ...+..++|||.|+|.|+|++||..|+++++++|+++|++++.++.  .++++.
T Consensus       427 ~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~  504 (534)
T PLN03018        427 KIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDF--GPLSLE  504 (534)
T ss_pred             ccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCC--CCCCcc
Confidence            999999999999999754321     1234689999999999999999999999999999999999976542  233443


Q ss_pred             ccCCccccccCCeEEEeecc
Q 041964          473 ESNGITIHRKFPLVVVATPH  492 (494)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~  492 (494)
                      ...+.+.. ++++.|++++|
T Consensus       505 ~~~~~~~~-p~~~~v~~~~R  523 (534)
T PLN03018        505 EDDASLLM-AKPLLLSVEPR  523 (534)
T ss_pred             ccccceec-CCCeEEEEEec
Confidence            33354444 45888888887


No 16 
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=2.6e-74  Score=560.41  Aligned_cols=454  Identities=32%  Similarity=0.527  Sum_probs=364.0

Q ss_pred             CCCCCCCCCCCCccccccCCC---CCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccc-h
Q 041964           14 NNNLPPSPSKLPIIGNLHQLG---MTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSS-I   89 (494)
Q Consensus        14 ~~~~ppgP~~~p~~G~~~~~~---~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~-~   89 (494)
                      ....||||+++|++|++..+.   .+...++.++..+||++|+.|+|+.++|+++||+.+++|+.++.+...+.+... .
T Consensus        33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~  112 (497)
T KOG0157|consen   33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES  112 (497)
T ss_pred             HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence            457899999999999999983   357788999999999999999999999999999999999976555555554444 3


Q ss_pred             hhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHH
Q 041964           90 ARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVI  169 (494)
Q Consensus        90 ~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i  169 (494)
                      .....  +.+ ++..+|+.|+++||++ .+.|+...++.+...+.+++..++..+... .++ +.+|+.+.++++++|++
T Consensus       113 ~~~~l--G~g-ll~~~g~~W~~~Rk~~-~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~-~~~-~~vd~~~~~~~~tld~i  186 (497)
T KOG0157|consen  113 LKPWL--GDG-LLFSDGEKWHKHRKLL-TPAFHFEILKSFVPVFIESSLILLLLLELA-ASG-EEVDLQDLLKRLTLDII  186 (497)
T ss_pred             HHHHh--cCc-cccCCchHHHHHHhhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcC-CeEcHHHHHHHHHHHHH
Confidence            33333  234 4444599999999996 899999999999999999999988888864 222 23999999999999999


Q ss_pred             HHHHhcccc-CCC-cchhHHHHHHHHHHHHhcccccccccc-chHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041964          170 CRAAFGMTC-GEG-EAGGKLKKLLEELGELLGMFCVGDFIP-WLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQR  246 (494)
Q Consensus       170 ~~~~fG~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  246 (494)
                      +.++||... +.. ....++..++......+...   ...| +..++..+. ..++..++.+.++++++++|+++++...
T Consensus       187 ~~~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~~~~-~~~~~~~a~~~~~~~~~~iI~~rr~~~~  262 (497)
T KOG0157|consen  187 CKTAMGPESLDAEGPELFEYVQAFDDLTELISKR---INLPLGTKFLYGLK-SERKLKKARKILHDFLEKIIRERREELE  262 (497)
T ss_pred             HHHhcCCccccccCCcccHHHHHHHHHHHHHHHH---HcCchhhhHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999322 212 23335555555544443322   2233 333333233 5678889999999999999998887664


Q ss_pred             hhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHH
Q 041964          247 QDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEV  326 (494)
Q Consensus       247 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei  326 (494)
                      .+...+     .....|+++.+.....     ..++++++.+++.+|++||+|||+++++|+++.|+.||++|+|+++|+
T Consensus       263 ~~~~~~-----~~~~~d~L~~~~~~~~-----~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi  332 (497)
T KOG0157|consen  263 KEGSGE-----EKKRLDFLDTLLLEED-----KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEV  332 (497)
T ss_pred             hcCCcc-----cchhhhHHHHHHHhcc-----CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            321110     1345778886333222     369999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCC-CChhhccchhhHHHHHHhhhcCCCCCccccccccccccee-eceecCCCCEEEechhhcccCCCCCC-CC
Q 041964          327 RRIAGSKSY-INEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQV-GGYNIPAKSRVIINAWAIGRDPASWE-EP  403 (494)
Q Consensus       327 ~~~~~~~~~-~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l-~g~~ip~g~~v~~~~~~~~~d~~~~~-dp  403 (494)
                      +++++.+.. ....+.++|+||++||+|||||||++|... |.+.+|+++ +||.||+|+.|.++++.+||||++|+ ||
T Consensus       333 ~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~~-R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp  411 (497)
T KOG0157|consen  333 DEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPLVA-RKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDP  411 (497)
T ss_pred             HHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCCCchhh-cccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCCh
Confidence            999985433 233344479999999999999999999986 999999999 58999999999999999999999996 99


Q ss_pred             CCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccC
Q 041964          404 EKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKF  483 (494)
Q Consensus       404 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (494)
                      ++||||||+++......++++|+|||+|+|.|+|++||++|+|+++++++++|++++..+..     ......+++++++
T Consensus       412 ~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~-----~~~~~~~~l~~~~  486 (497)
T KOG0157|consen  412 EEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK-----PKPVPELTLRPKN  486 (497)
T ss_pred             hhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC-----ceeeeEEEEEecC
Confidence            99999999975433233578999999999999999999999999999999999999877641     4455789999999


Q ss_pred             CeEEEeeccC
Q 041964          484 PLVVVATPHR  493 (494)
Q Consensus       484 ~~~~~~~~~~  493 (494)
                      +++|++++|.
T Consensus       487 gl~v~~~~r~  496 (497)
T KOG0157|consen  487 GLKVKLRPRG  496 (497)
T ss_pred             CeEEEEEeCC
Confidence            9999999985


No 17 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.2e-73  Score=521.55  Aligned_cols=456  Identities=25%  Similarity=0.386  Sum_probs=376.3

Q ss_pred             CCCCCCCCCCCCCccccccCC----CCCcchhHHHHHHhcCCcEEEe-cCCeeEEEecCHHHHHHHHHhccccccccc-c
Q 041964           13 SNNNLPPSPSKLPIIGNLHQL----GMTPHRSLTSLARLHGPIMLLQ-LGRERTFVISSPNFAREIMKTHDIIFANRP-Y   86 (494)
Q Consensus        13 ~~~~~ppgP~~~p~~G~~~~~----~~~~~~~~~~~~~~yG~v~~~~-~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~-~   86 (494)
                      ++-..+|||+.+|++|.+..+    ..+.++.....+++||+||+.. +|+...|.+.||++++.++++++. ++.|+ .
T Consensus        47 r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp~~  125 (519)
T KOG0159|consen   47 RPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRPLL  125 (519)
T ss_pred             CChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCcccc
Confidence            445678999999999998844    4678899999999999999999 899999999999999999999874 46664 1


Q ss_pred             cc--hhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcC--CCCCceehHHHHH
Q 041964           87 SS--IARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSC--SGSSPIDLSEILI  162 (494)
Q Consensus        87 ~~--~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~--~~~~~vd~~~~~~  162 (494)
                      ..  ....-.++...+++..+|+.|.+.|..+....+.+++++.|.+.+++.+++++..+.....  .+..+.|+.+.+.
T Consensus       126 ~~~w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~  205 (519)
T KOG0159|consen  126 IEPWVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELY  205 (519)
T ss_pred             cchhhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence            11  1222223455678889999999999998777899999999999999999999999997633  2344789999999


Q ss_pred             HHHHHHHHHHHhccccCCC-c-chh---HHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHH
Q 041964          163 SLTNNVICRAAFGMTCGEG-E-AGG---KLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYV  237 (494)
Q Consensus       163 ~~~~~~i~~~~fG~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (494)
                      +++++.|+.++||.+++.. + ...   .+.+++..+......+.+  ..++++++  .++.++++.++.+.+.++....
T Consensus       206 ~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~--~p~l~r~~--~t~~wk~~~~~~D~i~~~~~~~  281 (519)
T KOG0159|consen  206 RWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLML--MPSLWRYF--PTKVWKDFVRAWDQIFDVGDKY  281 (519)
T ss_pred             HHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHh--cchHHHhC--CChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876 2 223   445555544443332211  12456655  4667889999999999999999


Q ss_pred             HHHHHHhhhhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcH
Q 041964          238 IDHHMTRQRQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSK  317 (494)
Q Consensus       238 i~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~  317 (494)
                      |+...++.+.....+     .+....++..|.+        ..++.+++..+++.++.||.|||++++.|+||.|++||+
T Consensus       282 Id~~l~~l~~~~~~~-----~~~~~~l~~~L~~--------~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~  348 (519)
T KOG0159|consen  282 IDNALEELEKQDSAG-----SEYTGSLLELLLR--------KELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPE  348 (519)
T ss_pred             HHHHHHHHHhccccc-----cchhHHHHHHHHH--------ccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChH
Confidence            998887765422111     0222233333333        247899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC-CCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccC
Q 041964          318 TMKKVQEEVRRIAGS-KSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRD  396 (494)
Q Consensus       318 ~q~~lr~Ei~~~~~~-~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d  396 (494)
                      +|++|++|+.++++. ++.++.+++.+||||.||||||+||||+++... |+..+|.+|+||.||+||.|.++++.+.+|
T Consensus       349 ~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~-R~l~~D~vL~gY~vPagT~V~l~~~~~~r~  427 (519)
T KOG0159|consen  349 VQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPGNG-RVLPKDLVLSGYHVPAGTLVVLFLYVLGRN  427 (519)
T ss_pred             HHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceeccccccc-cccchhceeccceecCCCeEEEeehhhccC
Confidence            999999999999988 678999999999999999999999999999996 999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCC
Q 041964          397 PASWEEPEKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNG  476 (494)
Q Consensus       397 ~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~  476 (494)
                      |++|++|++|+||||++++. .+.++++++|||.|+|+|+|++||.+|+.++||+++++|+++..++.     ++...+.
T Consensus       428 ~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~-----pv~~~~~  501 (519)
T KOG0159|consen  428 PAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEE-----PVEYVYR  501 (519)
T ss_pred             hhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCC-----CccceeE
Confidence            99999999999999998763 24578999999999999999999999999999999999999987752     3455567


Q ss_pred             ccccccCCeEEEeeccC
Q 041964          477 ITIHRKFPLVVVATPHR  493 (494)
Q Consensus       477 ~~~~~~~~~~~~~~~~~  493 (494)
                      +++.|..++.+++++|.
T Consensus       502 ~il~P~~~l~f~f~~r~  518 (519)
T KOG0159|consen  502 FILVPNRPLRFKFRPRN  518 (519)
T ss_pred             EEEcCCCCcceeeeeCC
Confidence            77777789999999884


No 18 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=6.7e-75  Score=572.75  Aligned_cols=454  Identities=34%  Similarity=0.577  Sum_probs=364.8

Q ss_pred             CCCCCCCCccccccCCC--CCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhhh-hc
Q 041964           18 PPSPSKLPIIGNLHQLG--MTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIARK-LL   94 (494)
Q Consensus        18 ppgP~~~p~~G~~~~~~--~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~~-~~   94 (494)
                      ||||+++|++||+..+.  ++++.++.+++++||+||++++++.++++|+||+++++|+.++...++.++....... ..
T Consensus         1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~   80 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG   80 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred             CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence            89999999999999985  7889999999999999999999999999999999999999998776666543333322 11


Q ss_pred             CCCCceEeccCChhHHHHHhHhhhccCcHH-HHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHHHH
Q 041964           95 YDYRDLSWSPYGEYWRQMRSICVMRLLSTR-RVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICRAA  173 (494)
Q Consensus        95 ~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~-~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~~~  173 (494)
                      ...+..++..+++.|+.+|+.+ .+.|+.. .+ .+.+.+.+.++++++.|.+. ....+.+|+.++++.+++++++.++
T Consensus        81 ~~~~~~l~~~~~~~~~~~R~~~-~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~-~~~~~~vd~~~~~~~~~~d~i~~~~  157 (463)
T PF00067_consen   81 PFGGKGLFFSDGERWRRQRRLL-APAFSSKKIL-KLEPLIDEEAEELIDQLRKK-AGSSGPVDLFDWLRRFALDVIGRVL  157 (463)
T ss_dssp             HHTTTSSTTSSHHHHHHHHHHH-HHHHSHHHHH-HHHHHHHHHHHHHHHHHHHT-TTSESEEEHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccc-cccccccccc-cccccccccccccccccccc-ccccceeeeeccccccccccccccc
Confidence            1133556667789999999997 7888887 66 89999999999999999976 3334479999999999999999999


Q ss_pred             hccccCCCc--chhHHHHHHHHHHHHhccc--cccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041964          174 FGMTCGEGE--AGGKLKKLLEELGELLGMF--CVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQDV  249 (494)
Q Consensus       174 fG~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  249 (494)
                      ||.+++..+  ....+.+.++.+...+...  .+...+|++.++  .....+...++.+.+.+++...++++++..+.+ 
T Consensus       158 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  234 (463)
T PF00067_consen  158 FGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYL--PTPLFRRFKRARDRLRKYIKEIIEERREELDDG-  234 (463)
T ss_dssp             HSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSS-
T ss_pred             ccceeeeccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccc-
Confidence            999987431  1235666666665543221  122334433322  223445666677888888888888888766531 


Q ss_pred             hccCCcccccCcccHHHHHHHHh-cCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 041964          250 ATNGGVIVKEDQKDFLDVLLEIQ-NDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRR  328 (494)
Q Consensus       250 ~~~~~~~~~~~~~d~l~~ll~~~-~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~  328 (494)
                              .....|+++.++++. ...+ +..++++++.+++..+++||+|||+++++|++++|++||++|++||+|+++
T Consensus       235 --------~~~~~d~l~~ll~~~~~~~~-~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~  305 (463)
T PF00067_consen  235 --------DESRRDLLDSLLQASSDSDG-PSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDS  305 (463)
T ss_dssp             --------SSSCSSHHHHHHHHHHTTTT-TSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             --------cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    146789999999987 2222 147999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCCCCC
Q 041964          329 IAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFKP  408 (494)
Q Consensus       329 ~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P  408 (494)
                      +++.++.++.+++++||||+|||+||||++|+++..++|++.+|++++||.||+||.|+++.+.+|+||++|+||++|+|
T Consensus       306 ~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P  385 (463)
T PF00067_consen  306 VLGDGREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDP  385 (463)
T ss_dssp             HTTTSSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--T
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99877889999999999999999999999999996667999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeEEE
Q 041964          409 ERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLVVV  488 (494)
Q Consensus       409 ~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (494)
                      |||++.+........+++|||.|+|.|+|++||+.|+++++|+||++||+++.++...+  ......+++.+++ ++.|.
T Consensus       386 ~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~  462 (463)
T PF00067_consen  386 ERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEPE--PQEQQNGFLLPPK-PLKVK  462 (463)
T ss_dssp             TGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSGG--EEECSCSSSEEES-SSEEE
T ss_pred             ccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCCC--CccccCceEeeCC-CcEEe
Confidence            99998765223467789999999999999999999999999999999999996654211  1122224555554 56665


Q ss_pred             e
Q 041964          489 A  489 (494)
Q Consensus       489 ~  489 (494)
                      |
T Consensus       463 ~  463 (463)
T PF00067_consen  463 F  463 (463)
T ss_dssp             E
T ss_pred             C
Confidence            4


No 19 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=6.2e-73  Score=561.94  Aligned_cols=464  Identities=22%  Similarity=0.369  Sum_probs=350.2

Q ss_pred             CCCCCCCCCCCCCc----------------cccccCC-CCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHH
Q 041964           13 SNNNLPPSPSKLPI----------------IGNLHQL-GMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMK   75 (494)
Q Consensus        13 ~~~~~ppgP~~~p~----------------~G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~   75 (494)
                      -++..+|||+.-.+                +||+..+ ++.++..+.+++++||+||++++|+.++++|+||+.+++|+.
T Consensus       112 ~~~~~~pgp~laa~t~~ye~y~~~~~~~~~~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~  191 (633)
T PLN02738        112 LAKLGPPGELLAFLFTWVEAGEGYPKIPEAKGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILR  191 (633)
T ss_pred             hhhCCCCCchHHHHHcccccccccccCccccCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHh
Confidence            34567899873222                3333344 566788899999999999999999999999999999999999


Q ss_pred             hcccccccccccchhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCce
Q 041964           76 THDIIFANRPYSSIARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPI  155 (494)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~v  155 (494)
                      ++...|.+++........   .+.+++..+|+.|+++|+.+ .+.|+.+.+..+.+.+.++++++++.|.+. ...++++
T Consensus       192 ~~~~~f~k~~~~~~~~~~---~g~~l~~~dge~wr~rRr~l-~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~-~~~g~~v  266 (633)
T PLN02738        192 DNSKAYSKGILAEILEFV---MGKGLIPADGEIWRVRRRAI-VPALHQKYVAAMISLFGQASDRLCQKLDAA-ASDGEDV  266 (633)
T ss_pred             hCcccCCCcchHHHHhhc---cCCceecCCcHHHHHHHHhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcE
Confidence            877667665432222222   12345677899999999997 899999999999999999999999999865 3456789


Q ss_pred             ehHHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhh-hhhcchhHHHHHHHHHHHHHH
Q 041964          156 DLSEILISLTNNVICRAAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFL-DKLTGLDARVERVFKHLDNFL  234 (494)
Q Consensus       156 d~~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-~~~~~~~~~~~~~~~~~~~~~  234 (494)
                      |+.+.+..+++|+|+.++||.+++.....+.+...+................+|...+ ..+....+...+..+.+.+++
T Consensus       267 dl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~l~~~~  346 (633)
T PLN02738        267 EMESLFSRLTLDIIGKAVFNYDFDSLSNDTGIVEAVYTVLREAEDRSVSPIPVWEIPIWKDISPRQRKVAEALKLINDTL  346 (633)
T ss_pred             eHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHHhhcchhhhhhhHHhhhchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875422223333333322221111111112222111 111222234445556666666


Q ss_pred             HHHHHHHHHhhhhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHh
Q 041964          235 NYVIDHHMTRQRQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIK  314 (494)
Q Consensus       235 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~  314 (494)
                      ..+++..++..+................|+++.|+++.      ..++++++.++++.+++||+|||+++++|++++|++
T Consensus       347 ~~li~~~~~~~~~~~~~~~~~~~~~~~~dil~~Ll~~~------~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~  420 (633)
T PLN02738        347 DDLIAICKRMVEEEELQFHEEYMNERDPSILHFLLASG------DDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSK  420 (633)
T ss_pred             HHHHHHHHHHHhhhcccchhcccccccchHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            66666544322111000000000123458999998752      248999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcc
Q 041964          315 HSKTMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIG  394 (494)
Q Consensus       315 ~P~~q~~lr~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~  394 (494)
                      ||++|+|||+|++++++ ++.++++++++||||+|||+|+|||||+++... |.+.+|.+++||.||+||.|.++.+.+|
T Consensus       421 ~Pevq~kLreEl~~v~~-~~~~t~edL~kLPYL~AVIkEtLRL~p~~p~~~-R~a~~d~~i~gy~IPkGT~V~~s~~~ih  498 (633)
T PLN02738        421 EPSVVAKLQEEVDSVLG-DRFPTIEDMKKLKYTTRVINESLRLYPQPPVLI-RRSLENDMLGGYPIKRGEDIFISVWNLH  498 (633)
T ss_pred             CHHHHHHHHHHHHHhcC-CCCCCHHHHccCHHHHHHHHHHHhcCCCccccc-eeeccCceECCEEECCCCEEEecHHHHh
Confidence            99999999999999998 467899999999999999999999999999874 9999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcccccccC--CCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCccc
Q 041964          395 RDPASWEEPEKFKPERFLDNCS--SFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVD  472 (494)
Q Consensus       395 ~d~~~~~dp~~F~P~R~~~~~~--~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~  472 (494)
                      +||++|+||++|+||||+++..  .......+++|||.|+|+|+|++||++|++++||+|+++|+|++.++.  ++  +.
T Consensus       499 rdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~--~~--~~  574 (633)
T PLN02738        499 RSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGA--PP--VK  574 (633)
T ss_pred             CCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCC--CC--cc
Confidence            9999999999999999985321  112245689999999999999999999999999999999999987653  22  22


Q ss_pred             ccCCccccccCCeEEEeeccC
Q 041964          473 ESNGITIHRKFPLVVVATPHR  493 (494)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~  493 (494)
                      ...++++.+++++.|++++|.
T Consensus       575 ~~~~~~~~p~~~l~v~l~~R~  595 (633)
T PLN02738        575 MTTGATIHTTEGLKMTVTRRT  595 (633)
T ss_pred             cccceEEeeCCCcEEEEEECC
Confidence            234567777778999888875


No 20 
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=2.4e-73  Score=559.48  Aligned_cols=439  Identities=23%  Similarity=0.314  Sum_probs=339.2

Q ss_pred             CCCCCCCCCCCCCCccccccCC-----CCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccc
Q 041964           12 PSNNNLPPSPSKLPIIGNLHQL-----GMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPY   86 (494)
Q Consensus        12 ~~~~~~ppgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~   86 (494)
                      .++.+.||||+++|++||+..+     .+.++.++.+++++||++|++++|+.++|+++||+++++|+.++...|.++..
T Consensus        34 ~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~  113 (490)
T PLN02500         34 QKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP  113 (490)
T ss_pred             cCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc
Confidence            3445789999999999997654     13567789999999999999999999999999999999999988766654422


Q ss_pred             cchhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhh-hHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHH
Q 041964           87 SSIARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQS-FRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLT  165 (494)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~-~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~  165 (494)
                      .. ..... + +..++..+|+.|+++|+++ .+.|+...++. +.+.+.+.+..+++.|.     +++.+|+.+.+..++
T Consensus       114 ~~-~~~~~-g-~~~~~~~~g~~wr~~Rk~~-~~~f~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~vd~~~~~~~~~  184 (490)
T PLN02500        114 RS-IGGIL-G-KWSMLVLVGDMHRDMRSIS-LNFLSHARLRTHLLKEVERHTLLVLDSWK-----ENSTFSAQDEAKKFT  184 (490)
T ss_pred             hH-HHHHh-C-cccccccCCHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHhC-----CCCCEEehHHHHHHH
Confidence            21 12222 1 2245556899999999997 78999988887 46777777777777764     234799999999999


Q ss_pred             HHHHHHHHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041964          166 NNVICRAAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQ  245 (494)
Q Consensus       166 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  245 (494)
                      ++++++++||.+.+.. ....+.+.+..+.......  ...+|..        ..++..+..+.+.+++.+.++++++..
T Consensus       185 ~~vi~~~~fg~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~p~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~  253 (490)
T PLN02500        185 FNLMAKHIMSMDPGEE-ETEQLKKEYVTFMKGVVSA--PLNFPGT--------AYRKALKSRATILKFIERKMEERIEKL  253 (490)
T ss_pred             HHHHHHHHhCCCCCch-HHHHHHHHHHHHHhhhhcc--hhcCCCc--------ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999876432 1223333333322221110  0112211        123445567788888888888776543


Q ss_pred             hhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHH
Q 041964          246 RQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEE  325 (494)
Q Consensus       246 ~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~E  325 (494)
                      +.+    +.   .....|+++.+++.       ..++++++.+++..+++||+|||+++++|++++|++||++|+|+|+|
T Consensus       254 ~~~----~~---~~~~~d~l~~ll~~-------~~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~E  319 (490)
T PLN02500        254 KEE----DE---SVEEDDLLGWVLKH-------SNLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREE  319 (490)
T ss_pred             hcc----cC---CCCcchHHHHHHhc-------cCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            221    00   02346899999973       24899999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-----CCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCC
Q 041964          326 VRRIAG-----SKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASW  400 (494)
Q Consensus       326 i~~~~~-----~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~  400 (494)
                      ++++++     .++.++++|+++||||+|||+||||+||+++.. +|.+.+|++++||.|||||.|+++.+++|+||++|
T Consensus       320 i~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~~-~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~  398 (490)
T PLN02500        320 HLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRFL-HRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLY  398 (490)
T ss_pred             HHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccCe-eeEeCCCceeCCEEECCCCEEEechhhcccCcccC
Confidence            999874     234689999999999999999999999999986 69999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccCCCC------CCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCccccc
Q 041964          401 EEPEKFKPERFLDNCSSFK------GNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDES  474 (494)
Q Consensus       401 ~dp~~F~P~R~~~~~~~~~------~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~  474 (494)
                      +||++|+||||+++++...      ..+..++|||.|+|.|+|++||..|+++++++|+++|++++.++..  ..  .  
T Consensus       399 ~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~--~~--~--  472 (490)
T PLN02500        399 DQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ--AF--A--  472 (490)
T ss_pred             CCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc--ce--e--
Confidence            9999999999997543211      1356899999999999999999999999999999999999866531  11  1  


Q ss_pred             CCccccccCCeEEEeecc
Q 041964          475 NGITIHRKFPLVVVATPH  492 (494)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~  492 (494)
                      ...+.+ ++++.|++++-
T Consensus       473 ~~~~~~-~~~l~~~~~~~  489 (490)
T PLN02500        473 FPFVDF-PKGLPIRVRRI  489 (490)
T ss_pred             cccccC-CCCceEEEEeC
Confidence            122233 35888888763


No 21 
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=2.4e-72  Score=550.44  Aligned_cols=451  Identities=18%  Similarity=0.304  Sum_probs=342.6

Q ss_pred             CCCCCCCCCCccccccCCCCCcc---hhHHHHHHhcCCcEE---EecCCeeEEEecCHHHHHHHHHhcccccccccccch
Q 041964           16 NLPPSPSKLPIIGNLHQLGMTPH---RSLTSLARLHGPIML---LQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSI   89 (494)
Q Consensus        16 ~~ppgP~~~p~~G~~~~~~~~~~---~~~~~~~~~yG~v~~---~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~   89 (494)
                      .-.|||+++|++||+..+..+..   +++.+...+||..++   +++|+.++|+|+||+++++|+.++...|++++....
T Consensus        31 ~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~  110 (500)
T PLN02169         31 HGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKK  110 (500)
T ss_pred             CCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHH
Confidence            35789999999999977632222   333333444887665   678999999999999999999987767776543322


Q ss_pred             hhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhh--HhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHH
Q 041964           90 ARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSF--RSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNN  167 (494)
Q Consensus        90 ~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~--~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~  167 (494)
                      ....   .+.+++..+|+.|+++||++ .+.|+...+..+  .+.+.+++..+++.+.+. ..+++++|+.+.+..+++|
T Consensus       111 ~~~~---~g~gl~~~~g~~Wr~~Rk~l-~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~vd~~~~~~~~t~d  185 (500)
T PLN02169        111 IFDV---LGEGILTVDFELWEDLRKSN-HALFHNQDFIELSLSSNKSKLKEGLVPFLDNA-AHENIIIDLQDVFMRFMFD  185 (500)
T ss_pred             HHHh---hcCcccccCcHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeEeHHHHHHHHHHH
Confidence            2222   23456777899999999997 899998877642  366777888888888754 3345689999999999999


Q ss_pred             HHHHHHhccccCCCc---chhHHHHHHHHHHHHhccccccccccchHh-h-hhh-cchhHHHHHHHHHHHHHHHHHHHHH
Q 041964          168 VICRAAFGMTCGEGE---AGGKLKKLLEELGELLGMFCVGDFIPWLAF-L-DKL-TGLDARVERVFKHLDNFLNYVIDHH  241 (494)
Q Consensus       168 ~i~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~  241 (494)
                      +|+.++||.+.+..+   ....+...+........   .....|++.+ + ..+ .+..+...++.+.+.+++...|+++
T Consensus       186 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r  262 (500)
T PLN02169        186 TSSILMTGYDPMSLSIEMLEVEFGEAADIGEEAIY---YRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSR  262 (500)
T ss_pred             HHHhheeCCCccccCCCCCCCHHHHHHHHHHHHHH---hHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999875431   12344444444332221   1122343221 1 111 2344667788889999999999877


Q ss_pred             HHhhhhhhhccCCcccccCcccHHHHHHHHhcCC-CCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHH
Q 041964          242 MTRQRQDVATNGGVIVKEDQKDFLDVLLEIQNDG-TNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMK  320 (494)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~-~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~  320 (494)
                      ++.....   .+.   +....|+++.++++..+. ..+..++++++.+++.++++||+|||+++++|++++|++||++|+
T Consensus       263 ~~~~~~~---~~~---~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~  336 (500)
T PLN02169        263 RKEEISR---AET---EPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMA  336 (500)
T ss_pred             HHHhhcc---ccc---cCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHH
Confidence            6542110   000   022468999999864321 111247899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccce-eeceecCCCCEEEechhhcccCCCC
Q 041964          321 KVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQ-VGGYNIPAKSRVIINAWAIGRDPAS  399 (494)
Q Consensus       321 ~lr~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~-l~g~~ip~g~~v~~~~~~~~~d~~~  399 (494)
                      |+++||++++      +++++.+||||+|||+|||||||++|... |.+.+|.+ ++|+.||+||.|.+++|++|+||++
T Consensus       337 kl~~Ei~~v~------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~-r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~  409 (500)
T PLN02169        337 KIRHEINTKF------DNEDLEKLVYLHAALSESMRLYPPLPFNH-KAPAKPDVLPSGHKVDAESKIVICIYALGRMRSV  409 (500)
T ss_pred             HHHHHHHhhC------CHHHHhcCHHHHHHHHHHHhcCCCCCcCc-eecCCCCCccCCEEECCCCEEEEcHHHhhCCccc
Confidence            9999999874      57899999999999999999999999986 76666655 5999999999999999999999999


Q ss_pred             C-CCCCCCCCcccccccCCCC-CCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCc
Q 041964          400 W-EEPEKFKPERFLDNCSSFK-GNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGI  477 (494)
Q Consensus       400 ~-~dp~~F~P~R~~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~  477 (494)
                      | +||++|+||||++++.+.. ..+.+|+|||.|+|+|+|++||++|+|+++++|+++|++++.++.   +  +....++
T Consensus       410 w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~---~--~~~~~~~  484 (500)
T PLN02169        410 WGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH---K--IEAIPSI  484 (500)
T ss_pred             cCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC---C--cccccce
Confidence            9 8999999999997644322 235789999999999999999999999999999999999986542   2  2334567


Q ss_pred             cccccCCeEEEeecc
Q 041964          478 TIHRKFPLVVVATPH  492 (494)
Q Consensus       478 ~~~~~~~~~~~~~~~  492 (494)
                      ++.+++++.+++++|
T Consensus       485 ~l~~~~gl~l~l~~~  499 (500)
T PLN02169        485 LLRMKHGLKVTVTKK  499 (500)
T ss_pred             EEecCCCEEEEEEeC
Confidence            888999999999887


No 22 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=8.1e-73  Score=551.26  Aligned_cols=431  Identities=21%  Similarity=0.262  Sum_probs=339.8

Q ss_pred             CCCCCCCCCCCCCccccccCCCCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhhh
Q 041964           13 SNNNLPPSPSKLPIIGNLHQLGMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIARK   92 (494)
Q Consensus        13 ~~~~~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~~   92 (494)
                      ++++.||||+++|++||+..+.+++..++.+++++||++|++++|+.++++|+||+++++|+.++...+..+.... ...
T Consensus        28 ~r~~~ppgp~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~-~~~  106 (463)
T PLN02774         28 SKKGLPPGTMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQS-MLD  106 (463)
T ss_pred             CCCCCCCCCCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHH-HHH
Confidence            3446789999999999998887778889999999999999999999999999999999999988776654332222 222


Q ss_pred             hcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhh-hHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHH
Q 041964           93 LLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQS-FRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICR  171 (494)
Q Consensus        93 ~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~-~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~  171 (494)
                      ..  +.++++..+|+.|+++|+++ .+.|+...++. +.+.+.+.+.++++.|.     .++++|+.+.+..+++++++.
T Consensus       107 ~l--g~~~~~~~~g~~w~~~R~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~  178 (463)
T PLN02774        107 IL--GTCNIAAVHGSTHRYMRGSL-LSLISPTMIRDHLLPKIDEFMRSHLSGWD-----GLKTIDIQEKTKEMALLSALK  178 (463)
T ss_pred             Hh--CccchhhcCCHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHhhC-----CCCCEEeeHHHHHHHHHHHHH
Confidence            22  22345566899999999997 78999998876 68888888888888775     235799999999999999999


Q ss_pred             HHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 041964          172 AAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQDVAT  251 (494)
Q Consensus       172 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  251 (494)
                      ++||.+....  ..++.+.+..+..  ....+...+|.        ...++..++.+.+.+++.+.++++++..      
T Consensus       179 ~~~g~~~~~~--~~~~~~~~~~~~~--~~~~~~~~lp~--------~~~~~~~~~~~~~~~~~~~~i~~r~~~~------  240 (463)
T PLN02774        179 QIAGTLSKPI--SEEFKTEFFKLVL--GTLSLPIDLPG--------TNYRSGVQARKNIVRMLRQLIQERRASG------  240 (463)
T ss_pred             HHcCCCChHH--HHHHHHHHHHHhc--ccccCCcCCCC--------hhhhHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence            9999865322  2223322222211  11111111111        1123445667777888888877655321      


Q ss_pred             cCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC
Q 041964          252 NGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRIAG  331 (494)
Q Consensus       252 ~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~~~  331 (494)
                             ...+|+++.|+++..+   +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|++++++
T Consensus       241 -------~~~~d~l~~ll~~~~~---~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~  310 (463)
T PLN02774        241 -------ETHTDMLGYLMRKEGN---RYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRE  310 (463)
T ss_pred             -------CCcccHHHHHHhCccC---CCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence                   3346999999974322   235899999999999999999999999999999999999999999999999986


Q ss_pred             C---CCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCCCCC
Q 041964          332 S---KSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFKP  408 (494)
Q Consensus       332 ~---~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P  408 (494)
                      .   ++.++++++++||||+|||+|+||++|+++.. +|.+.+|++++||.||||+.|+++++.+|+||++|+||++|+|
T Consensus       311 ~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~~-~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~P  389 (463)
T PLN02774        311 RKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGV-LRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNP  389 (463)
T ss_pred             ccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCCc-ccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCc
Confidence            4   35689999999999999999999999999866 5999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeEEE
Q 041964          409 ERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLVVV  488 (494)
Q Consensus       409 ~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (494)
                      |||++++.+   ....++|||+|+|.|||++||.+|++++++.|+++|++++.++.  +...    +. ++.+++++.|+
T Consensus       390 eRfl~~~~~---~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~--~~~~----~~-~~~p~~g~~~~  459 (463)
T PLN02774        390 WRWLDKSLE---SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGD--KLMK----FP-RVEAPNGLHIR  459 (463)
T ss_pred             hhcCCCCcC---CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCC--cccc----CC-CCCCCCCceEE
Confidence            999965421   12369999999999999999999999999999999999987653  1111    11 23356788888


Q ss_pred             eec
Q 041964          489 ATP  491 (494)
Q Consensus       489 ~~~  491 (494)
                      ++|
T Consensus       460 ~~~  462 (463)
T PLN02774        460 VSP  462 (463)
T ss_pred             eee
Confidence            764


No 23 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=4.2e-72  Score=554.23  Aligned_cols=455  Identities=20%  Similarity=0.338  Sum_probs=344.1

Q ss_pred             CCCCCCCCCccccccCCCCCcchhHHHHHHhc---CCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhhhh
Q 041964           17 LPPSPSKLPIIGNLHQLGMTPHRSLTSLARLH---GPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIARKL   93 (494)
Q Consensus        17 ~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~y---G~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~~~   93 (494)
                      .+|||+++|++||+..+..+ +..+.+|.++|   |++|++++|+.++++++||+++++|+.++...+.+..........
T Consensus        31 ~~pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~  109 (516)
T PLN03195         31 NRKGPKSWPIIGAALEQLKN-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEV  109 (516)
T ss_pred             ccCCCCCCCeecchHHHHhc-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHH
Confidence            47899999999998765333 44577888888   899999999999999999999999998765556554332111111


Q ss_pred             cCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhH-HHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHHH
Q 041964           94 LYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLR-EEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICRA  172 (494)
Q Consensus        94 ~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i-~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~~  172 (494)
                      ..  ++++++.+|+.|+++||++ .+.|+.++++.+.+.+ .+.+..+.+.+.+. ..+++++|+.+++..+++|+++.+
T Consensus       110 ~~--g~~l~~~~g~~w~~~Rr~l-~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~-~~~~~~vd~~~~~~~~~~dvi~~~  185 (516)
T PLN03195        110 LL--GDGIFNVDGELWRKQRKTA-SFEFASKNLRDFSTVVFREYSLKLSSILSQA-SFANQVVDMQDLFMRMTLDSICKV  185 (516)
T ss_pred             Hh--cCeeeccCcHHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeEcHHHHHHHHHHHHHHHH
Confidence            11  2346678899999999996 8999999999999876 55677777777653 234568999999999999999999


Q ss_pred             HhccccCCCc---chhHHHHHHHHHHHHhccccccccccchHhhhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041964          173 AFGMTCGEGE---AGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKL-TGLDARVERVFKHLDNFLNYVIDHHMTRQRQD  248 (494)
Q Consensus       173 ~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  248 (494)
                      +||.+++..+   ....+.+.++......... .  ..|.+...... ....+...+..+.+.+++.+.+++++++....
T Consensus       186 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  262 (516)
T PLN03195        186 GFGVEIGTLSPSLPENPFAQAFDTANIIVTLR-F--IDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEA  262 (516)
T ss_pred             HhCCCccccccCCCccHHHHHHHHHHHHHHHH-H--hcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999886542   1124544444433221110 1  11211110101 11223445567778888888887776543210


Q ss_pred             hhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 041964          249 VATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRR  328 (494)
Q Consensus       249 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~  328 (494)
                      ..  ..   .....|+++.|+++..+.  +..++++++.+++..+++||+|||+++++|++++|++||++|+|||+|+++
T Consensus       263 ~~--~~---~~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~  335 (516)
T PLN03195        263 RK--SG---KKVKHDILSRFIELGEDP--DSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKA  335 (516)
T ss_pred             cc--cc---ccccccHHHHHHhccCCC--CCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            00  00   023568999999865432  246999999999999999999999999999999999999999999999999


Q ss_pred             HhCC--------------------CCCCChhhccchhhHHHHHHhhhcCCCCCccccccccccccee-eceecCCCCEEE
Q 041964          329 IAGS--------------------KSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQV-GGYNIPAKSRVI  387 (494)
Q Consensus       329 ~~~~--------------------~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l-~g~~ip~g~~v~  387 (494)
                      +++.                    ++.++++++.+||||+|||+||||+||+++... |.+.+|.++ +|+.||+||.|.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~-r~~~~d~~~~~G~~IpkGt~V~  414 (516)
T PLN03195        336 LEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDP-KGILEDDVLPDGTKVKAGGMVT  414 (516)
T ss_pred             hhhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchh-hhhccCcCcCCCcEECCCCEEE
Confidence            8743                    245899999999999999999999999999985 767776665 999999999999


Q ss_pred             echhhcccCCCCC-CCCCCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCC
Q 041964          388 INAWAIGRDPASW-EEPEKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQRE  466 (494)
Q Consensus       388 ~~~~~~~~d~~~~-~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~  466 (494)
                      ++++.+|+||++| +||++|+||||++++......+..++|||.|+|+|+|++||++|++++++.|+++|++++.++.  
T Consensus       415 ~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~--  492 (516)
T PLN03195        415 YVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH--  492 (516)
T ss_pred             EehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCC--
Confidence            9999999999999 9999999999996432112245689999999999999999999999999999999999986542  


Q ss_pred             CcCcccccCCccccccCCeEEEeecc
Q 041964          467 EDLDVDESNGITIHRKFPLVVVATPH  492 (494)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (494)
                       +...  ....++.+++++.|++++|
T Consensus       493 -~~~~--~~~~~~~~~~~~~v~~~~r  515 (516)
T PLN03195        493 -PVKY--RMMTILSMANGLKVTVSRR  515 (516)
T ss_pred             -ccee--eeeeEEecCCCEEEEEEeC
Confidence             2222  2345667888999998887


No 24 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=6.5e-72  Score=543.70  Aligned_cols=438  Identities=20%  Similarity=0.260  Sum_probs=343.4

Q ss_pred             CCCCCCCCCCCCCCCccccccCC-----CCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhccccccccc
Q 041964           11 NPSNNNLPPSPSKLPIIGNLHQL-----GMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRP   85 (494)
Q Consensus        11 ~~~~~~~ppgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~   85 (494)
                      .++++++||||.++|++||++.+     ..+++.++.+++++||+||++++|+.++||++||+++++++.++...|..+.
T Consensus         2 ~~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~   81 (452)
T PLN03141          2 SKKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAY   81 (452)
T ss_pred             CCCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccC
Confidence            35677889999999999999887     2468899999999999999999999999999999999999998887776543


Q ss_pred             ccchhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhh-hHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHH
Q 041964           86 YSSIARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQS-FRSLREEETIQMIEKVALRSCSGSSPIDLSEILISL  164 (494)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~-~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~  164 (494)
                      . .....+.  +..+++..+|+.|+++|+++ .+.|+...+.. ..+.+.+.+.++++.|.     .++++|+.+.+..+
T Consensus        82 ~-~~~~~l~--g~~~~~~~~g~~wr~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  152 (452)
T PLN03141         82 P-KSLTELM--GKSSILLINGSLQRRVHGLI-GAFLKSPHLKAQITRDMERYVSESLDSWR-----DDPPVLVQDETKKI  152 (452)
T ss_pred             c-hhHHHHh--CcccccccCcHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHHHHhcc-----CCCCEEhHHHHHHH
Confidence            2 2222232  22356677899999999996 77887776665 34555566655555542     34679999999999


Q ss_pred             HHHHHHHHHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041964          165 TNNVICRAAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTR  244 (494)
Q Consensus       165 ~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  244 (494)
                      ++++++.++||.+....  ...+.+.+..+...+..+  ...+|..        ...+..++.+++.+++...+++++..
T Consensus       153 ~~~vi~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~p~~--------~~~~~~~~~~~l~~~~~~~i~~~~~~  220 (452)
T PLN03141        153 AFEVLVKALISLEPGEE--MEFLKKEFQEFIKGLMSL--PIKLPGT--------RLYRSLQAKKRMVKLVKKIIEEKRRA  220 (452)
T ss_pred             HHHHHHHHHcCCCchHH--HHHHHHHHHHHhhhHHhC--ccCCCch--------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999765322  233333343333322111  1112211        11234456788888888888877654


Q ss_pred             hhhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHH
Q 041964          245 QRQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQE  324 (494)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~  324 (494)
                      ...     +.........|+++.++++..     ..+++++++.++..+++||+|||+++++|++++|++||++|+++++
T Consensus       221 ~~~-----~~~~~~~~~~d~l~~ll~~~~-----~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~  290 (452)
T PLN03141        221 MKN-----KEEDETGIPKDVVDVLLRDGS-----DELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTE  290 (452)
T ss_pred             Hhc-----cCccccCChhhHHHHHHhcCC-----CCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHH
Confidence            321     000000124689999997542     3589999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC----CCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCC
Q 041964          325 EVRRIAG----SKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASW  400 (494)
Q Consensus       325 Ei~~~~~----~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~  400 (494)
                      |++++++    .++.++++++.+||||+|||+|++|+||+++.+ +|.+.+|++++||.||+|+.|+++++.+|+||++|
T Consensus       291 Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~-~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~  369 (452)
T PLN03141        291 ENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIINGV-MRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENY  369 (452)
T ss_pred             HHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCCc-ceeecCCeeECCEEECCCCEEEEehHhccCCchhc
Confidence            9998864    234589999999999999999999999999855 79999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCcccc
Q 041964          401 EEPEKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIH  480 (494)
Q Consensus       401 ~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (494)
                      +||++|+||||++++.    .+.+|+|||.|+|.|+|++||.+|+++++|.|+++|++++.++.   .  .   ...++.
T Consensus       370 ~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~---~--~---~~~~~~  437 (452)
T PLN03141        370 DNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDT---I--V---NFPTVR  437 (452)
T ss_pred             CCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCC---e--e---eccccc
Confidence            9999999999997532    35689999999999999999999999999999999999976542   1  1   124778


Q ss_pred             ccCCeEEEeecc
Q 041964          481 RKFPLVVVATPH  492 (494)
Q Consensus       481 ~~~~~~~~~~~~  492 (494)
                      ++.++.|++++|
T Consensus       438 ~~~~~~~~~~~~  449 (452)
T PLN03141        438 MKRKLPIWVTRI  449 (452)
T ss_pred             CCCCceEEEEeC
Confidence            888899998887


No 25 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=1.6e-70  Score=537.79  Aligned_cols=459  Identities=23%  Similarity=0.367  Sum_probs=356.4

Q ss_pred             CCCCCCCCCccccccCC-----CCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhh
Q 041964           17 LPPSPSKLPIIGNLHQL-----GMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIAR   91 (494)
Q Consensus        17 ~ppgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~   91 (494)
                      .=-|-.|||++|..+++     ++.++..+.+|+++||++|++++|+.+.++++||+++++|+++....|.+++......
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~   92 (489)
T PLN02936         13 LWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSE   92 (489)
T ss_pred             cCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhH
Confidence            34567799999998886     6789999999999999999999999999999999999999988766777664332222


Q ss_pred             hhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHh-hHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHH
Q 041964           92 KLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRS-LREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVIC  170 (494)
Q Consensus        92 ~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~-~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~  170 (494)
                      ...   +..++..+|+.|+++||++ .+.|+.+.+..+.+ .+.++++++++.|.+. .++++++|+.+++..+++++++
T Consensus        93 ~~~---~~~i~~~~g~~wk~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~-~~~g~~vd~~~~~~~~~~dvi~  167 (489)
T PLN02936         93 FLF---GSGFAIAEGELWTARRRAV-VPSLHRRYLSVMVDRVFCKCAERLVEKLEPV-ALSGEAVNMEAKFSQLTLDVIG  167 (489)
T ss_pred             HHh---cCccccCCchHHHHHHHhh-cCccCHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCceeHHHHHHHHHHHHHH
Confidence            121   2445667899999999997 89999988888755 7888999999999865 3456789999999999999999


Q ss_pred             HHHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHh--hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041964          171 RAAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAF--LDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQD  248 (494)
Q Consensus       171 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  248 (494)
                      .++||.+++..+...++.+.+......... .....+|++..  +....+..+...++.+.+.+++...++++++..+..
T Consensus       168 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~  246 (489)
T PLN02936        168 LSVFNYNFDSLTTDSPVIQAVYTALKEAET-RSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIVEAE  246 (489)
T ss_pred             HHHcCCCccccccCcHHHHHHHHHHHHHHH-hhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999987652223344434333222211 11223343321  111122334566777888888888887766543211


Q ss_pred             hhcc-CCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 041964          249 VATN-GGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVR  327 (494)
Q Consensus       249 ~~~~-~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~  327 (494)
                      .... ......+...|+++.|+++..      .++.+++.++++.+++||+|||+++++|++++|++||++|+++|+|++
T Consensus       247 ~~~~~~~~~~~~~~~d~l~~ll~~~~------~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~  320 (489)
T PLN02936        247 GEVIEGEEYVNDSDPSVLRFLLASRE------EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELD  320 (489)
T ss_pred             ccccccccccccCchHHHHHHHhccc------cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            0000 000001234689999986532      488999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCCCC
Q 041964          328 RIAGSKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFK  407 (494)
Q Consensus       328 ~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~  407 (494)
                      ++++. +.++++++++||||+|||+||||++|+++...+|.+.+|+.++||.||+|+.|+++.+.+|+||++|+||++|+
T Consensus       321 ~~~~~-~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~  399 (489)
T PLN02936        321 RVLQG-RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFV  399 (489)
T ss_pred             HHhcC-CCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccC
Confidence            99985 45899999999999999999999999999888777778888899999999999999999999999999999999


Q ss_pred             CcccccccCC--CCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCe
Q 041964          408 PERFLDNCSS--FKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPL  485 (494)
Q Consensus       408 P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (494)
                      ||||++++..  ....+..++|||.|+|.|+|++||++|+++++++|+++|+++++++.   ++  ....+++..+++++
T Consensus       400 PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~---~~--~~~~~~~~~~~~~~  474 (489)
T PLN02936        400 PERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQ---DI--VMTTGATIHTTNGL  474 (489)
T ss_pred             ccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCC---cc--ceecceEEeeCCCe
Confidence            9999965421  12234589999999999999999999999999999999999987653   22  22235666677789


Q ss_pred             EEEeeccC
Q 041964          486 VVVATPHR  493 (494)
Q Consensus       486 ~~~~~~~~  493 (494)
                      .|++++|.
T Consensus       475 ~v~~~~R~  482 (489)
T PLN02936        475 YMTVSRRR  482 (489)
T ss_pred             EEEEEeee
Confidence            99988875


No 26 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=1.4e-70  Score=534.97  Aligned_cols=426  Identities=21%  Similarity=0.324  Sum_probs=341.8

Q ss_pred             CCCCCCCCCCCCccccccCC-CCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccchhhh
Q 041964           14 NNNLPPSPSKLPIIGNLHQL-GMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSSIARK   92 (494)
Q Consensus        14 ~~~~ppgP~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~~   92 (494)
                      ..+.||||+++|++||+..+ .++++.++.+++++||++|++++|+.++|+++||+++++|+.++.+.+.  +.......
T Consensus        33 ~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~--~~~~~~~~  110 (463)
T PLN02196         33 KLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFK--PTFPASKE  110 (463)
T ss_pred             CCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccc--ccCchHHH
Confidence            44578888899999998875 6789999999999999999999999999999999999999988776553  22221211


Q ss_pred             hcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHHH
Q 041964           93 LLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICRA  172 (494)
Q Consensus        93 ~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~~  172 (494)
                      ... +..+++..+|+.|+++||++ .+.|+.++++.+.+.+.+++.++++.|.      ++++|+.+++..+++++++.+
T Consensus       111 ~~~-g~~~l~~~~g~~w~~~Rk~l-~~~f~~~~l~~~~~~i~~~~~~~~~~~~------~~~v~~~~~~~~~~~~v~~~~  182 (463)
T PLN02196        111 RML-GKQAIFFHQGDYHAKLRKLV-LRAFMPDAIRNMVPDIESIAQESLNSWE------GTQINTYQEMKTYTFNVALLS  182 (463)
T ss_pred             HHc-CcccccccCcHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHcCC------CCeEEeHHHHHHHHHHHHHHH
Confidence            222 23456667899999999997 7899999999999999999999988774      247999999999999999999


Q ss_pred             HhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 041964          173 AFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQDVATN  252 (494)
Q Consensus       173 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (494)
                      +||.+....  ...+.+.+..+....      ..+|+..    .....++..++.+.+.+++.+.++++++..       
T Consensus       183 ~fG~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~----p~~~~~~~~~a~~~~~~~~~~~i~~~~~~~-------  243 (463)
T PLN02196        183 IFGKDEVLY--REDLKRCYYILEKGY------NSMPINL----PGTLFHKSMKARKELAQILAKILSKRRQNG-------  243 (463)
T ss_pred             HcCCCCchH--HHHHHHHHHHHhcch------hcccccC----CCccchHHHHHHHHHHHHHHHHHHHHhhcC-------
Confidence            999875321  122333222222111      1122210    011124455677788888888887665421       


Q ss_pred             CCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC
Q 041964          253 GGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRIAGS  332 (494)
Q Consensus       253 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~~~~  332 (494)
                            ....|+++.+++..      ..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++++.+.
T Consensus       244 ------~~~~d~l~~ll~~~------~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~  311 (463)
T PLN02196        244 ------SSHNDLLGSFMGDK------EGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKD  311 (463)
T ss_pred             ------CCcccHHHHHHhcC------CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence                  33468999888521      358999999999999999999999999999999999999999999999999864


Q ss_pred             ---CCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCCCCCc
Q 041964          333 ---KSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFKPE  409 (494)
Q Consensus       333 ---~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~  409 (494)
                         ++.++++++.+||||+|||+|+||++|+++... |.+.+|++++||.||+|+.|+++++++|+||++|+||++|+||
T Consensus       312 ~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~~-R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~Pe  390 (463)
T PLN02196        312 KEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTF-REAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPS  390 (463)
T ss_pred             cccCCCCCHHHHhcChHHHHHHHHHHhcCCCccccc-eeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChh
Confidence               356899999999999999999999999999885 9999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeEEEe
Q 041964          410 RFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLVVVA  489 (494)
Q Consensus       410 R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (494)
                      ||++..     .+..++|||.|+|.|+|++||+.|+++++++|+++|++++.++..    ++.  ...+..|++++.|++
T Consensus       391 Rfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~----~~~--~~~~~~p~~~~~~~~  459 (463)
T PLN02196        391 RFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSN----GIQ--YGPFALPQNGLPIAL  459 (463)
T ss_pred             hhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC----ceE--EcccccCCCCceEEE
Confidence            999632     356899999999999999999999999999999999999866421    222  233445777888877


Q ss_pred             ecc
Q 041964          490 TPH  492 (494)
Q Consensus       490 ~~~  492 (494)
                      +..
T Consensus       460 ~~~  462 (463)
T PLN02196        460 SRK  462 (463)
T ss_pred             ecC
Confidence            653


No 27 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=5.3e-69  Score=531.27  Aligned_cols=439  Identities=22%  Similarity=0.296  Sum_probs=344.7

Q ss_pred             CCCCCCCCCCCCCCccccccCC-----CCCcchhHHHHHHhcCC--cEEEecCCeeEEEecCHHHHHHHHHhcccccccc
Q 041964           12 PSNNNLPPSPSKLPIIGNLHQL-----GMTPHRSLTSLARLHGP--IMLLQLGRERTFVISSPNFAREIMKTHDIIFANR   84 (494)
Q Consensus        12 ~~~~~~ppgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~--v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~   84 (494)
                      .++.+.||||+++|++|+++.+     ..+++.++.+++++||+  +|++++++.+.|+++||+++++|+.++ +.|.++
T Consensus        38 ~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~  116 (490)
T PLN02302         38 EGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPG  116 (490)
T ss_pred             cCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccC
Confidence            3455789999999999998876     35789999999999997  799999999999999999999999876 345443


Q ss_pred             cccchhhhhcCCCCceEeccCChhHHHHHhHhhhccC-cHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHH
Q 041964           85 PYSSIARKLLYDYRDLSWSPYGEYWRQMRSICVMRLL-STRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILIS  163 (494)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f-~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~  163 (494)
                      ....... . . +...+...+|+.|+++|+++ .+.| +.+.++.+.+.+.+++.++++.+..     ++.+|+.+.+..
T Consensus       117 ~~~~~~~-~-~-g~~~~~~~~g~~w~~~R~~~-~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~-----~~~v~~~~~~~~  187 (490)
T PLN02302        117 WPESTVE-L-I-GRKSFVGITGEEHKRLRRLT-AAPVNGPEALSTYIPYIEENVKSCLEKWSK-----MGEIEFLTELRK  187 (490)
T ss_pred             CchhHHH-H-h-ccccccccCcHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEehHHHHHH
Confidence            3222222 1 1 22345566899999999997 6777 5788999999999999999998852     246999999999


Q ss_pred             HHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 041964          164 LTNNVICRAAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMT  243 (494)
Q Consensus       164 ~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  243 (494)
                      +++++++.++||.+....  ...+.+.+..+...+....  ..+|..        ......++.+.+.+++.+.++++++
T Consensus       188 ~~~~vi~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~p~~--------~~~~~~~~~~~l~~~~~~~i~~~~~  255 (490)
T PLN02302        188 LTFKIIMYIFLSSESELV--MEALEREYTTLNYGVRAMA--INLPGF--------AYHRALKARKKLVALFQSIVDERRN  255 (490)
T ss_pred             HHHHHHHHHHcCCCChHH--HHHHHHHHHHHHHHhhhCC--cCCCch--------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999876432  2222222222222111111  111211        1123345566777888888877665


Q ss_pred             hhhhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHH
Q 041964          244 RQRQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQ  323 (494)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr  323 (494)
                      ....     +.   +....|+++.|+++..+.+  ..++++++.+++..+++||+|||+++++|++++|++||++|+|+|
T Consensus       256 ~~~~-----~~---~~~~~d~l~~ll~~~~~~~--~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~  325 (490)
T PLN02302        256 SRKQ-----NI---SPRKKDMLDLLLDAEDENG--RKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAK  325 (490)
T ss_pred             hhhc-----cC---CCCcCCHHHHHHhhhccCC--CCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            4321     10   0345799999998754332  358999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCC----CCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCC
Q 041964          324 EEVRRIAGSKS----YINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPAS  399 (494)
Q Consensus       324 ~Ei~~~~~~~~----~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~  399 (494)
                      +|++++++...    .++++++++||||+|||+|+||++|+++.. +|.+.+|++++||.||+|+.|.++.+++|+||++
T Consensus       326 ~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~-~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~  404 (490)
T PLN02302        326 AEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTV-FREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEV  404 (490)
T ss_pred             HHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCcccc-hhcccCCEeECCEEECCCCEEEeeHHHhcCCccc
Confidence            99999986432    378999999999999999999999999886 5999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccc
Q 041964          400 WEEPEKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITI  479 (494)
Q Consensus       400 ~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (494)
                      |+||++|+||||++..    ..+..++|||.|+|.|+|++||..|++++++.|+++|++++.++.  .  ++.  ....+
T Consensus       405 ~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~--~~~--~~~~~  474 (490)
T PLN02302        405 YPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPG--C--KVM--YLPHP  474 (490)
T ss_pred             CCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCC--C--cce--eCCCC
Confidence            9999999999999643    245689999999999999999999999999999999999986542  1  122  22236


Q ss_pred             cccCCeEEEeeccC
Q 041964          480 HRKFPLVVVATPHR  493 (494)
Q Consensus       480 ~~~~~~~~~~~~~~  493 (494)
                      .|++++.+++++|.
T Consensus       475 ~p~~~~~~~~~~~~  488 (490)
T PLN02302        475 RPKDNCLARITKVA  488 (490)
T ss_pred             CCCCCceEEEEecc
Confidence            67778899988874


No 28 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=1.6e-68  Score=518.40  Aligned_cols=434  Identities=21%  Similarity=0.284  Sum_probs=336.9

Q ss_pred             CCCCCCCCCCCCCccccccCCC-----CCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhccccccccccc
Q 041964           13 SNNNLPPSPSKLPIIGNLHQLG-----MTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYS   87 (494)
Q Consensus        13 ~~~~~ppgP~~~p~~G~~~~~~-----~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~   87 (494)
                      .+.++||||.++|++||++.+.     .++..++.+++++||++|++++++.++|+|+||+++++++.++...|.+++..
T Consensus        27 ~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~  106 (472)
T PLN02987         27 RRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPG  106 (472)
T ss_pred             CCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcH
Confidence            3446889999999999998762     56889999999999999999999999999999999999999988777654322


Q ss_pred             chhhhhcCCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHh-hHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHH
Q 041964           88 SIARKLLYDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRS-LREEETIQMIEKVALRSCSGSSPIDLSEILISLTN  166 (494)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~-~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~  166 (494)
                       ...... + +.+++..+|+.|+++|+++ .+.++.+.+..+.. .+.+.+...++.|.       +++++.+.+.++++
T Consensus       107 -~~~~~l-g-~~~l~~~~g~~wr~~R~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~t~  175 (472)
T PLN02987        107 -SISNLL-G-KHSLLLMKGNLHKKMHSLT-MSFANSSIIKDHLLLDIDRLIRFNLDSWS-------SRVLLMEEAKKITF  175 (472)
T ss_pred             -HHHHHh-C-cccccccCcHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHhhc-------cceehHHHHHHHHH
Confidence             222222 2 2345566899999999996 55545555554432 12233333333331       36999999999999


Q ss_pred             HHHHHHHhccccCCCcchhHHHHHHHHHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041964          167 NVICRAAFGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQR  246 (494)
Q Consensus       167 ~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  246 (494)
                      +++++++||.+....  .+.+.+.+.......    ....+|++      ....++..++.+++.+++.+.++++++...
T Consensus       176 ~vi~~~~fg~~~~~~--~~~~~~~~~~~~~~~----~~~~~p~l------~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~  243 (472)
T PLN02987        176 ELTVKQLMSFDPGEW--TESLRKEYVLVIEGF----FSVPLPLF------STTYRRAIQARTKVAEALTLVVMKRRKEEE  243 (472)
T ss_pred             HHHHHHHcCCCChHH--HHHHHHHHHHHHhhh----hcCCCcCC------CchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999875432  222322222222111    11223432      122355667788888899988888765432


Q ss_pred             hhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHH
Q 041964          247 QDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEV  326 (494)
Q Consensus       247 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei  326 (494)
                      .     +.    ....|+++.|++..      ..++++++.+++..+++||+|||+.+++|++++|++||++|+++++|+
T Consensus       244 ~-----~~----~~~~d~l~~ll~~~------~~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~  308 (472)
T PLN02987        244 E-----GA----EKKKDMLAALLASD------DGFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEH  308 (472)
T ss_pred             c-----cC----cccccHHHHHHhcC------CCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            1     10    23569999999753      148999999999999999999999999999999999999999999999


Q ss_pred             HHHhC---CCCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCC
Q 041964          327 RRIAG---SKSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEP  403 (494)
Q Consensus       327 ~~~~~---~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp  403 (494)
                      +++.+   .+..++++++.+|||++||++|+||++|+++.. +|.+.+|++++||.||+|+.|+++.+.+|+||++|+||
T Consensus       309 ~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~-~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p  387 (472)
T PLN02987        309 EKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGI-FRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDA  387 (472)
T ss_pred             HHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCCc-cccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCc
Confidence            99875   234678999999999999999999999999865 59999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccC
Q 041964          404 EKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKF  483 (494)
Q Consensus       404 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (494)
                      ++|+||||++.+... .....++|||.|+|.|+|++||..|++++++.|+++|++++.++.   +  +.  ...++.|.+
T Consensus       388 ~~F~PeRfl~~~~~~-~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~--~~--~~~~~~p~~  459 (472)
T PLN02987        388 RTFNPWRWQSNSGTT-VPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQD---K--LV--FFPTTRTQK  459 (472)
T ss_pred             cccCcccCCCCCCCC-CCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCC---c--ee--ecccccCCC
Confidence            999999999754321 234689999999999999999999999999999999999986643   1  11  244888888


Q ss_pred             CeEEEeeccC
Q 041964          484 PLVVVATPHR  493 (494)
Q Consensus       484 ~~~~~~~~~~  493 (494)
                      ++.+++++|.
T Consensus       460 ~~~~~~~~r~  469 (472)
T PLN02987        460 RYPINVKRRD  469 (472)
T ss_pred             CceEEEEecc
Confidence            8999998874


No 29 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.5e-69  Score=480.72  Aligned_cols=443  Identities=23%  Similarity=0.353  Sum_probs=350.1

Q ss_pred             CCCCCCCCCCccccccCCCCCcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccc-hhhhhc
Q 041964           16 NLPPSPSKLPIIGNLHQLGMTPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSS-IARKLL   94 (494)
Q Consensus        16 ~~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~-~~~~~~   94 (494)
                      .||-.-.|+|++|++..++++|.+|++++++|||+||++.++|+.+.++.||+....++......++-+.... .....+
T Consensus        32 ~PPli~gwiP~lG~a~~fgk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~vF  111 (486)
T KOG0684|consen   32 EPPLIKGWIPWLGSALAFGKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPVF  111 (486)
T ss_pred             CCcccccCcchhhHHHHhccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhhc
Confidence            4444556799999999999999999999999999999999999999999999999999988754444433332 222222


Q ss_pred             CCCCceEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHH-HHhhcCCCCCceehHHHHHHHHHHHHHHHH
Q 041964           95 YDYRDLSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEK-VALRSCSGSSPIDLSEILISLTNNVICRAA  173 (494)
Q Consensus        95 ~~~~~~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~-l~~~~~~~~~~vd~~~~~~~~~~~~i~~~~  173 (494)
                        +++.+....+....++.+++ ...+...+++++.+.|.+++.+.++. |.    .+|+...+.+....+++.+.-.++
T Consensus       112 --g~~v~~d~~~~~~~e~~~~~-k~~L~~~~lk~~~e~m~~el~~~f~~~~~----~s~~~d~l~~~~~~ii~tAs~~ll  184 (486)
T KOG0684|consen  112 --GKGVVYDVPNHVMMEQKKFF-KSALGGVALKSLVELMLEELHAYFETSLG----ESGETDGLYTFCRLIIFTASRLLL  184 (486)
T ss_pred             --CCCccccCCCchHHHHHHHH-HHHhchhhHHHHHHHHHHHHHHHHhcccc----cccchhHhhhhhHHHhhhhHHHhh
Confidence              34566666778888888886 78899999999999999999999988 33    234445556666666666665566


Q ss_pred             hccccCCCcchhHHHHHHHHHHHHhcccccccccc-chHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 041964          174 FGMTCGEGEAGGKLKKLLEELGELLGMFCVGDFIP-WLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQDVATN  252 (494)
Q Consensus       174 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (494)
                      ||......  .++....+.++...+.  .+...|| ++.     .+..+...++.+++.+.+...+.++++..+      
T Consensus       185 ~~e~r~~~--d~~~a~l~~dLd~~F~--~~d~~FP~~LP-----~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s------  249 (486)
T KOG0684|consen  185 GGEVRDQL--DADVAKLYHDLDQGFQ--PFDFLFPYNLP-----IPLLRRRDRARKKISKIFSKIILDRRASIS------  249 (486)
T ss_pred             hhhhhhhh--cchHHHHHHHHhcccc--chHhhcccCCC-----cchhhhHHHHHHHHHHHHHHHHHHHHhccc------
Confidence            66654443  1222233333333222  1222344 221     223345557788888888877777776542      


Q ss_pred             CCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC
Q 041964          253 GGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRIAGS  332 (494)
Q Consensus       253 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~~~~  332 (494)
                            ...+|+++.+++...++   ...+++|+.+..+.+++||++||+.|.+|++++|++|||+++++++|+.+++|.
T Consensus       250 ------~~~~dmlq~l~~~y~dg---~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~  320 (486)
T KOG0684|consen  250 ------KWDNDMLQSLMEKYKDG---RPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGE  320 (486)
T ss_pred             ------cccHHHHHHHHHHhhcC---CcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Confidence                  56679999999843333   479999999999999999999999999999999999999999999999999998


Q ss_pred             CCC-CChhhccchhhHHHHHHhhhcCCCCCcccccccccccceeec----eecCCCCEEEechhhcccCCCCCCCCCCCC
Q 041964          333 KSY-INEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVGG----YNIPAKSRVIINAWAIGRDPASWEEPEKFK  407 (494)
Q Consensus       333 ~~~-~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g----~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~  407 (494)
                      +.. ++++++++||.|+.||+|||||+||++..+ |.+.+|+++.+    |.||+|..|++++..+|+||++|+||+.|+
T Consensus       321 ~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~-R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk  399 (486)
T KOG0684|consen  321 KKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSLM-RKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFK  399 (486)
T ss_pred             cCCCCCHHHHhcchHHHHHHHHHHhcCCchhhHH-HhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCC
Confidence            765 999999999999999999999999998887 99999999955    999999999999999999999999999999


Q ss_pred             CcccccccCCCC--CC--CceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccC
Q 041964          408 PERFLDNCSSFK--GN--DFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKF  483 (494)
Q Consensus       408 P~R~~~~~~~~~--~~--~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (494)
                      |+||++++++.+  +.  .+++||||.|.|.|||+.||.+|+|.++..+|++||+++.+++ -+++|+..   .+..|.+
T Consensus       400 ~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~-~P~~d~s~---~v~~P~g  475 (486)
T KOG0684|consen  400 PDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGP-FPEVDYSR---MVMQPEG  475 (486)
T ss_pred             hhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCC-CCCCCHHH---hhcCCCC
Confidence            999997765431  22  3457999999999999999999999999999999999998862 23344442   3777888


Q ss_pred             CeEEEeeccCC
Q 041964          484 PLVVVATPHRF  494 (494)
Q Consensus       484 ~~~~~~~~~~~  494 (494)
                      ++.|+.+.|.+
T Consensus       476 ~v~irYK~R~~  486 (486)
T KOG0684|consen  476 DVRIRYKRRPL  486 (486)
T ss_pred             CceEEEeecCC
Confidence            99999998864


No 30 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=1.8e-66  Score=508.07  Aligned_cols=440  Identities=21%  Similarity=0.292  Sum_probs=340.2

Q ss_pred             CCCccccccCCCCCcchhHHHHHHhcC-CcEEEecCCeeEEEecCHHHHHHHHHhcccccccccccc-hhhhhcCCCCce
Q 041964           23 KLPIIGNLHQLGMTPHRSLTSLARLHG-PIMLLQLGRERTFVISSPNFAREIMKTHDIIFANRPYSS-IARKLLYDYRDL  100 (494)
Q Consensus        23 ~~p~~G~~~~~~~~~~~~~~~~~~~yG-~v~~~~~g~~~~vvi~dp~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~  100 (494)
                      +.++.|++.....+...++..+.++++ .+++++.++.  ++++||+++++|+.++.+.|.+..... ....+.   +.+
T Consensus        48 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~---g~g  122 (502)
T PLN02426         48 RAYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLL---GRG  122 (502)
T ss_pred             CCCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhc---CCc
Confidence            356888887754556778878888887 5778776553  899999999999998766676554322 222222   245


Q ss_pred             EeccCChhHHHHHhHhhhccCcHHHHhhhH--hhHHHHHHHHHHHHHhhcC-CCCCceehHHHHHHHHHHHHHHHHhccc
Q 041964          101 SWSPYGEYWRQMRSICVMRLLSTRRVQSFR--SLREEETIQMIEKVALRSC-SGSSPIDLSEILISLTNNVICRAAFGMT  177 (494)
Q Consensus       101 ~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~--~~i~~~~~~~l~~l~~~~~-~~~~~vd~~~~~~~~~~~~i~~~~fG~~  177 (494)
                      +++.+|+.|+++||++ .+.|+.+.++.+.  +.+.+.++++++.+.+... +.++++|+.++++.+++|+++.++||.+
T Consensus       123 i~~~~g~~wk~~Rk~l-~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~  201 (502)
T PLN02426        123 IFNVDGDSWRFQRKMA-SLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLD  201 (502)
T ss_pred             eeecCcHHHHHHHHHh-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCC
Confidence            7778899999999997 8999999888764  6777777888888876421 2246799999999999999999999998


Q ss_pred             cCCCc---chhHHHHHHHHHHHHhccccccccccchHhhh-hh-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 041964          178 CGEGE---AGGKLKKLLEELGELLGMFCVGDFIPWLAFLD-KL-TGLDARVERVFKHLDNFLNYVIDHHMTRQRQDVATN  252 (494)
Q Consensus       178 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (494)
                      ++..+   ...++.+.++.+...... .....+|++..+. .+ .+..++..++.+.+.+++.+.++++++...      
T Consensus       202 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~------  274 (502)
T PLN02426        202 PGCLELSLPISEFADAFDTASKLSAE-RAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGF------  274 (502)
T ss_pred             CcccCCCCCccHHHHHHHHHHHHHHH-HHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence            86542   123455555543332211 1111223222111 11 223356677788888888888887664311      


Q ss_pred             CCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC
Q 041964          253 GGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRIAGS  332 (494)
Q Consensus       253 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~~~~  332 (494)
                            ....|+++.++++.        .+++++.+++.++++||+|||+++++|++|+|++||++|+|+|+|++++++.
T Consensus       275 ------~~~~dll~~ll~~~--------~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~  340 (502)
T PLN02426        275 ------SASKDLLSRFMASI--------NDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGP  340 (502)
T ss_pred             ------CCcchHHHHHHhcC--------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC
Confidence                  23579999999753        2578999999999999999999999999999999999999999999999876


Q ss_pred             CC-CCChhhccchhhHHHHHHhhhcCCCCCccccccccccccee-eceecCCCCEEEechhhcccCCCCC-CCCCCCCCc
Q 041964          333 KS-YINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQV-GGYNIPAKSRVIINAWAIGRDPASW-EEPEKFKPE  409 (494)
Q Consensus       333 ~~-~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l-~g~~ip~g~~v~~~~~~~~~d~~~~-~dp~~F~P~  409 (494)
                      ++ .++++++++||||+|||+|+||+||+++... |.+.+|.++ +|+.||+||.|.++++++|+||++| +||++|+||
T Consensus       341 ~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~~-r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~Pe  419 (502)
T PLN02426        341 NQEAASFEEMKEMHYLHAALYESMRLFPPVQFDS-KFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPE  419 (502)
T ss_pred             CCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCcc-eeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCcc
Confidence            43 6899999999999999999999999999875 999999887 9999999999999999999999999 999999999


Q ss_pred             ccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeEEEe
Q 041964          410 RFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLVVVA  489 (494)
Q Consensus       410 R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (494)
                      ||++++......+..++|||.|+|.|+|++||.+|++++++.|+++|++++.++.. +  ......++++.+++++.|++
T Consensus       420 Rwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~-~--~~~~~~~~~~~~~~gl~v~~  496 (502)
T PLN02426        420 RWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSN-R--APRFAPGLTATVRGGLPVRV  496 (502)
T ss_pred             ccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCC-C--CCcccceeEEecCCCEEEEE
Confidence            99974321122456799999999999999999999999999999999999854321 1  12223468888899999999


Q ss_pred             eccC
Q 041964          490 TPHR  493 (494)
Q Consensus       490 ~~~~  493 (494)
                      ++|.
T Consensus       497 ~~r~  500 (502)
T PLN02426        497 RERV  500 (502)
T ss_pred             EEcc
Confidence            8874


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=1e-60  Score=459.92  Aligned_cols=408  Identities=17%  Similarity=0.247  Sum_probs=296.8

Q ss_pred             CCCCCCCCCCCCccccccCC-----CCCcchhHHHHHHhcCC-cEEEecCCeeE-------EEecCHHHHHHHHHh----
Q 041964           14 NNNLPPSPSKLPIIGNLHQL-----GMTPHRSLTSLARLHGP-IMLLQLGRERT-------FVISSPNFAREIMKT----   76 (494)
Q Consensus        14 ~~~~ppgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~-v~~~~~g~~~~-------vvi~dp~~~~~i~~~----   76 (494)
                      +.+.|||+.++|++|++.++     ..++..|+.+.++|||+ ||++.++|.|+       |+++||++++.|+.+    
T Consensus        15 ~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~   94 (480)
T PLN02648         15 PLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVD   94 (480)
T ss_pred             CCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcc
Confidence            45678999999999999864     45678999999999999 99999998666       999999999999975    


Q ss_pred             cccccccccccchhhhhcCCCCc---eEeccCChhHHHHHhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCC
Q 041964           77 HDIIFANRPYSSIARKLLYDYRD---LSWSPYGEYWRQMRSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSS  153 (494)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~  153 (494)
                      +...+.... ..... +.  +++   .++..+|+.|+++|+++ .+.|+ ..++.+.+.|.+.+.++++.|... ...++
T Consensus        95 ~~~~~~~~~-~~~~~-l~--G~~~~~s~~~~~g~~H~r~Rrll-~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~-~~~~~  167 (480)
T PLN02648         95 KRDVFTGTY-MPSTA-FT--GGYRVLSYLDPSEPKHAKLKSFL-FELLK-SRHRRFIPEFRAAFAELFDTWEAE-LAKKG  167 (480)
T ss_pred             ccccceeee-ccCcc-cc--CCceeeeecCCCCchHHHHHHHH-HHHHH-HhhhhhhhHHHHHHHHHHHHHHHH-HhhCC
Confidence            433333321 12222 32  223   66677899999999997 89998 577889999999999999999643 23445


Q ss_pred             ceehHHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHhccccc-ccccc-chHhh-hhhcchhH-HHHHHHHH
Q 041964          154 PIDLSEILISLTNNVICRAAFGMTCGEGEAGGKLKKLLEELGELLGMFCV-GDFIP-WLAFL-DKLTGLDA-RVERVFKH  229 (494)
Q Consensus       154 ~vd~~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~l~~~-~~~~~~~~-~~~~~~~~  229 (494)
                      ++|+.+.++.++++++++++||.+.+..+-...+......+.... .... ...++ ++..+ ........ ...+..+.
T Consensus       168 ~vdv~~~~~~lt~~vi~~~lfG~~~~~~~l~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  246 (480)
T PLN02648        168 KAEFNDPLDQMAFNFLCKALTGKDPSETALGSDGPALIQKWLALQ-LAPLASTGLPHVLEELLLHTFPLPFFLVKSDYDK  246 (480)
T ss_pred             CccccchHHHHHHHHHHHHHcCCCcchhhhccchhHHHHHHHHHH-hhHHHHcCchHHHHHHhhcccCCchhhhhccHHH
Confidence            799999999999999999999987654101111112222111100 0000 00000 00000 00000000 00000011


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccCCcccccCcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHH-HHHhhchhhHHHHHHH
Q 041964          230 LDNFLNYVIDHHMTRQRQDVATNGGVIVKEDQKDFLDVLLEIQNDGTNGISMARENMKAIILD-MFAGGTDTTYTALEWA  308 (494)
Q Consensus       230 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~-~~~ag~~tt~~~l~~~  308 (494)
                      +.+++                           .+.++.+++...+    .+++++|+.++++. +.+++++|++++++|+
T Consensus       247 ~~~~~---------------------------~~~~~~ll~~~~~----~~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~  295 (480)
T PLN02648        247 LYDFF---------------------------RASATEALDLAEK----FGISREEALHNLLFVLGFNAFGGFKIFFPAL  295 (480)
T ss_pred             HHHHH---------------------------HHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            11111                           1122344443322    24999999998875 4567778888899999


Q ss_pred             HHHHHhCcH-HHHHHHHHHHHHhCC-CCCCChhhccchhhHHHHHHhhhcCCCCCcccccccccccceee----ceecCC
Q 041964          309 LTELIKHSK-TMKKVQEEVRRIAGS-KSYINEDHIEKMFYLKAVIKETLRLHPPVPLLLPRQATKDVQVG----GYNIPA  382 (494)
Q Consensus       309 l~~L~~~P~-~q~~lr~Ei~~~~~~-~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~----g~~ip~  382 (494)
                      +++|++||+ +|++|++|++++++. ++.++++++++||||++||+|+||+||+++... |.+.+|++++    ||.||+
T Consensus       296 l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~-r~a~~d~~l~~~~~g~~Ipk  374 (480)
T PLN02648        296 LKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQY-GRAREDFVIESHDAAFEIKK  374 (480)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCccccc-ceecCCEEEecCCceEEECC
Confidence            999999995 999999999999864 456899999999999999999999999999886 8899999995    799999


Q ss_pred             CCEEEechhhcccCCCCCCCCCCCCCcccccccCCCCCCCceeecc---------cCCCCCCcchHHHHHHHHHHHHHHH
Q 041964          383 KSRVIINAWAIGRDPASWEEPEKFKPERFLDNCSSFKGNDFQFIPF---------GAGRRGCPGATFAIAIVELVLSNLL  453 (494)
Q Consensus       383 g~~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~F---------g~G~r~C~G~~~A~~e~~~~l~~ll  453 (494)
                      |+.|+++.+.+|+||++|+||++|+|+||++++.+   ....+++|         |+|+|.|+|++||+.|+++++++|+
T Consensus       375 G~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll  451 (480)
T PLN02648        375 GEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELF  451 (480)
T ss_pred             CCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864321   11234444         6778999999999999999999999


Q ss_pred             hhcc-eeCCCCC
Q 041964          454 YKFD-WALPGEQ  464 (494)
Q Consensus       454 ~~~~-~~~~~~~  464 (494)
                      ++|+ +++.++.
T Consensus       452 ~~f~~~~l~~~~  463 (480)
T PLN02648        452 LRYDSFEIEVDT  463 (480)
T ss_pred             HHhCEEeecCCc
Confidence            9998 9987664


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=1.1e-54  Score=413.67  Aligned_cols=383  Identities=27%  Similarity=0.413  Sum_probs=304.7

Q ss_pred             cchhHHHHHHhcCCcEEEecCCee--EEEecCHHHHHHHHHhcccccccccccchhhh-hc-CCCCceEeccCChhHHHH
Q 041964           37 PHRSLTSLARLHGPIMLLQLGRER--TFVISSPNFAREIMKTHDIIFANRPYSSIARK-LL-YDYRDLSWSPYGEYWRQM  112 (494)
Q Consensus        37 ~~~~~~~~~~~yG~v~~~~~g~~~--~vvi~dp~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~g~~w~~~  112 (494)
                      +......+.+.||.++++...+..  .+++++|+++++++.++. .+++......... .. ..+...++..+|+.|.++
T Consensus        24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~  102 (411)
T COG2124          24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRL  102 (411)
T ss_pred             hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHH
Confidence            566777889999999888875544  899999999999998875 1222221111110 11 112334778899999999


Q ss_pred             HhHhhhccCcHHHHhhhHhhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHH
Q 041964          113 RSICVMRLLSTRRVQSFRSLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICRAAFGMTCGEGEAGGKLKKLLE  192 (494)
Q Consensus       113 Rk~l~~~~f~~~~l~~~~~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~  192 (494)
                      ||++ .++|+++.++.+.+.+.+.+.++++.+ ..   + +.+++.+.+..+++++|+ .+||.+..+.   ..+.....
T Consensus       103 Rkl~-~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~---~-~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~---~~~~~~~~  172 (411)
T COG2124         103 RKLL-APAFTPRALRGYRPLIREIADRLLDDL-WQ---G-GADLVLDFAAELTLRVIA-ELLGVPLEDR---PQLLRWSD  172 (411)
T ss_pred             HHHh-ccccCHHHHHHHHHHHHHHHHHHHHhc-cc---C-CchhHHHHhhhhhHHHHH-HHhCCCHHHH---HHHHHHHH
Confidence            9996 999999999999999999999999998 32   2 688999999999999999 9999986543   22222222


Q ss_pred             HHHHHhccccccccccchHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccCcccHHHHHHHHh
Q 041964          193 ELGELLGMFCVGDFIPWLAFLDKLTGLDARVERVFKHLDNFLNYVIDHHMTRQRQDVATNGGVIVKEDQKDFLDVLLEIQ  272 (494)
Q Consensus       193 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~  272 (494)
                      .....   ..     |...    ......+..++...+.+++..+|++++.               ...+|+++.|+.+.
T Consensus       173 ~~~~~---~~-----~~~~----~~~~~~~~~~a~~~~~~~~~~li~~rR~---------------~~~~dlls~l~~a~  225 (411)
T COG2124         173 ALLLR---LD-----PDLG----PEEPWRRARAARRELDAYLRALIAERRA---------------APRDDLLSLLLSAE  225 (411)
T ss_pred             HHHhc---cC-----cccC----CcccHHHHHHHHHHHHHHHHHHHHHhcc---------------CCcccHHHHHHHHh
Confidence            21111   00     1111    1122355678888999999999988772               66789999999988


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCCCCCChhhccchhhHHHHHH
Q 041964          273 NDGTNGISMARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIK  352 (494)
Q Consensus       273 ~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~  352 (494)
                      .+++  ..+|++||.++++.+++||+|||+++++|+++.|++||+.++++++|.+.                ||++++++
T Consensus       226 ~~~~--~~lsd~Ei~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~----------------~~~~~~v~  287 (411)
T COG2124         226 DDGG--GRLSDDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR----------------PLLEAVVE  287 (411)
T ss_pred             hCCC--CcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch----------------HHHHHHHH
Confidence            7754  26999999999999999999999999999999999999999999999775                89999999


Q ss_pred             hhhcCCCCCcccccccccccceeeceecCCCCEEEechhhcccCCCCCCCCCCCCCcccccccCCCCCCCceeecccCCC
Q 041964          353 ETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFKPERFLDNCSSFKGNDFQFIPFGAGR  432 (494)
Q Consensus       353 E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~  432 (494)
                      |+||+||+++. ++|.+.+|++++|+.||+|+.|.++++++|+||++|+||++|||+||.          ..++|||+|+
T Consensus       288 E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~  356 (411)
T COG2124         288 ETLRLYPPVPL-ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGP  356 (411)
T ss_pred             HHHHhCCchhc-cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCC
Confidence            99999999999 579999999999999999999999999999999999999999999987          4799999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHhhcceeCCCCCCCCcCcccccCCccccccCCeEEEeecc
Q 041964          433 RGCPGATFAIAIVELVLSNLLYKFDWALPGEQREEDLDVDESNGITIHRKFPLVVVATPH  492 (494)
Q Consensus       433 r~C~G~~~A~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (494)
                      |.|+|+.||.+|++++++.++++|++....+.  .    ......+..+..+..+.++.+
T Consensus       357 H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~~--~----~~~~~~~~~~~g~~~l~v~~~  410 (411)
T COG2124         357 HRCLGAALARLELKVALAELLRRFPLLLLAEP--P----PLVRRPTLVPRGGERLPVRRR  410 (411)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHhCchhhcCCC--C----CccccccccCCCcceeeeecC
Confidence            99999999999999999999999998765541  1    111234444555555555544


No 33 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=55.85  E-value=40  Score=20.93  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHH
Q 041964          285 NMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEV  326 (494)
Q Consensus       285 ~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei  326 (494)
                      ++...+..++-.|.|..+-.++-.+.+.--||+.+..+..|+
T Consensus         6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen    6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            456667777778888888888888888888999988888775


No 34 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=51.06  E-value=6.9  Score=25.23  Aligned_cols=25  Identities=16%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhC
Q 041964          307 WALTELIKHSKTMKKVQEEVRRIAG  331 (494)
Q Consensus       307 ~~l~~L~~~P~~q~~lr~Ei~~~~~  331 (494)
                      -.+.+|.+||++.+++.+.=.+.+|
T Consensus         4 ~iV~YLv~nPevl~kl~~g~asLIG   28 (57)
T PF05952_consen    4 EIVNYLVQNPEVLEKLKEGEASLIG   28 (57)
T ss_pred             HHHHHHHHChHHHHHHHcCCeeEec
Confidence            3578999999999999986555554


No 35 
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=44.19  E-value=1.1e+02  Score=21.98  Aligned_cols=69  Identities=13%  Similarity=0.193  Sum_probs=41.9

Q ss_pred             ChhHHHHHhHhhh---ccCcHHHHhhhH-----hhHHHHHHHHHHHHHhhcCCCCCceehHHHHHHHHHHHHHHHHhc
Q 041964          106 GEYWRQMRSICVM---RLLSTRRVQSFR-----SLREEETIQMIEKVALRSCSGSSPIDLSEILISLTNNVICRAAFG  175 (494)
Q Consensus       106 g~~w~~~Rk~l~~---~~f~~~~l~~~~-----~~i~~~~~~~l~~l~~~~~~~~~~vd~~~~~~~~~~~~i~~~~fG  175 (494)
                      |..|++.-|.+ .   .+++...++.+.     .-+.+.+.+++..|.+.....-+.-.+...+...-++.++.-++|
T Consensus        13 Gr~WK~laR~L-g~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~~   89 (90)
T cd08780          13 GKKWKPVGRSL-QKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLLG   89 (90)
T ss_pred             hHHHHHHHHHH-cccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHhc
Confidence            78999887775 3   237777666553     337788999999999752112222344555555555555544443


No 36 
>PRK06789 flagellar motor switch protein; Validated
Probab=39.27  E-value=32  Score=23.70  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=33.1

Q ss_pred             HHHhhhcCCCCCccccccccccccee--eceecCCCCEEEec
Q 041964          350 VIKETLRLHPPVPLLLPRQATKDVQV--GGYNIPAKSRVIIN  389 (494)
Q Consensus       350 ~i~E~lRl~~~~~~~~~R~~~~~~~l--~g~~ip~g~~v~~~  389 (494)
                      -++|.+.|.+....-..|.+.+++.+  +|..|.+|..|.++
T Consensus        21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~   62 (74)
T PRK06789         21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN   62 (74)
T ss_pred             EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence            36899999998877777888777765  99999999988765


No 37 
>PF07886 BA14K:  BA14K-like protein;  InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process []. 
Probab=38.54  E-value=32  Score=19.09  Aligned_cols=16  Identities=31%  Similarity=0.659  Sum_probs=13.3

Q ss_pred             CCceeecccCCCCCCc
Q 041964          421 NDFQFIPFGAGRRGCP  436 (494)
Q Consensus       421 ~~~~~~~Fg~G~r~C~  436 (494)
                      ....|+|+++..|.|.
T Consensus        16 ~~~Ty~~~~G~r~~C~   31 (31)
T PF07886_consen   16 RDNTYQPYDGPRRFCR   31 (31)
T ss_pred             CCCcEeCCCCccccCc
Confidence            5568999999999884


No 38 
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=37.91  E-value=60  Score=23.12  Aligned_cols=18  Identities=6%  Similarity=0.333  Sum_probs=15.7

Q ss_pred             CcHHHHHHHHHHHHHhCC
Q 041964          315 HSKTMKKVQEEVRRIAGS  332 (494)
Q Consensus       315 ~P~~q~~lr~Ei~~~~~~  332 (494)
                      -|++++.+|+||.+|+..
T Consensus        35 ~pd~l~~Lr~eIl~VI~K   52 (88)
T COG0851          35 QPDYLEQLRKEILEVISK   52 (88)
T ss_pred             CcchHHHHHHHHHHHHHH
Confidence            399999999999999764


No 39 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=34.57  E-value=18  Score=22.87  Aligned_cols=10  Identities=50%  Similarity=1.162  Sum_probs=8.7

Q ss_pred             cccCCCCCCc
Q 041964          427 PFGAGRRGCP  436 (494)
Q Consensus       427 ~Fg~G~r~C~  436 (494)
                      +||.|.|.|-
T Consensus        13 kfg~GsrsC~   22 (56)
T KOG3506|consen   13 KFGQGSRSCR   22 (56)
T ss_pred             ccCCCCccee
Confidence            6999999994


No 40 
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.42  E-value=1.9e+02  Score=20.65  Aligned_cols=39  Identities=13%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             ChhHHHHHhHhhhccCcHHHHhhhH---hhHHHHHHHHHHHHHhh
Q 041964          106 GEYWRQMRSICVMRLLSTRRVQSFR---SLREEETIQMIEKVALR  147 (494)
Q Consensus       106 g~~w~~~Rk~l~~~~f~~~~l~~~~---~~i~~~~~~~l~~l~~~  147 (494)
                      |..|++.=+-+   .|+...+..+.   +-..+.+.+++..|.++
T Consensus        18 G~~Wk~Lar~L---Gls~~dI~~i~~~~~~~~eq~~~mL~~W~~r   59 (86)
T cd08318          18 GEDWKTLAPHL---EMKDKEIRAIESDSEDIKMQAKQLLVAWQDR   59 (86)
T ss_pred             hhhHHHHHHHc---CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            78898877665   67777665543   23568889999999976


No 41 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=32.18  E-value=37  Score=26.45  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=16.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHHhh
Q 041964          433 RGCPGATFAIAIVELVLSNLLYK  455 (494)
Q Consensus       433 r~C~G~~~A~~e~~~~l~~ll~~  455 (494)
                      .+|.|+.||...+-.++.+|+..
T Consensus        18 yN~~gKKFsE~QiN~FIs~lIts   40 (148)
T PF09201_consen   18 YNCLGKKFSETQINAFISHLITS   40 (148)
T ss_dssp             EETTS----HHHHHHHHHHHHHS
T ss_pred             ecccchHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999863


No 42 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=30.59  E-value=36  Score=28.89  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             hhHHHHHHhhhcCCCCCcccccccccccceeeceecCCCCEEEe
Q 041964          345 FYLKAVIKETLRLHPPVPLLLPRQATKDVQVGGYNIPAKSRVII  388 (494)
Q Consensus       345 p~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~  388 (494)
                      ....|||.|+.-.......-+  ...+|+.++|..||+||.|.-
T Consensus        53 n~I~A~V~~~qtv~~Gs~vrl--RLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   53 NTIRAVVDGTQTVVDGSRVRL--RLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CeEEEEEecceEEeCCCEEEE--EEcCceEECCEEeCCCCEEEE
Confidence            456678888887765553322  347889999999999998764


No 43 
>PF14483 Cut8_M:  Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=29.82  E-value=92  Score=18.25  Aligned_cols=13  Identities=8%  Similarity=0.309  Sum_probs=10.1

Q ss_pred             HHhCcHHHHHHHH
Q 041964          312 LIKHSKTMKKVQE  324 (494)
Q Consensus       312 L~~~P~~q~~lr~  324 (494)
                      +.+||++++.++.
T Consensus        23 ~~~HPei~~~i~~   35 (38)
T PF14483_consen   23 CERHPEIQQEIRS   35 (38)
T ss_dssp             HHHSTHHHHHHHT
T ss_pred             HHhChhHHHHHHh
Confidence            3489999988775


No 44 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=29.33  E-value=1.2e+02  Score=23.52  Aligned_cols=40  Identities=18%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             CcchhHHHHHHhcCCcEEEecCCeeEEEecCHHHHHHHHHhc
Q 041964           36 TPHRSLTSLARLHGPIMLLQLGRERTFVISSPNFAREIMKTH   77 (494)
Q Consensus        36 ~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~dp~~~~~i~~~~   77 (494)
                      +-...+.+|.++||.+--.  .+...+...|++.++++....
T Consensus        75 ~v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~~  114 (129)
T PF13625_consen   75 NVEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLADP  114 (129)
T ss_pred             HHHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhCh
Confidence            3456789999999985442  246788889999999998764


No 45 
>PF14129 DUF4296:  Domain of unknown function (DUF4296)
Probab=28.48  E-value=2.2e+02  Score=20.28  Aligned_cols=49  Identities=4%  Similarity=0.048  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Q 041964          282 ARENMKAIILDMFAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRIA  330 (494)
Q Consensus       282 ~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~~  330 (494)
                      ..+.........++-=+..++....-.+.+.++||+..+++.+.+.+-+
T Consensus        30 ~~~~~~~~~~~~I~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~rL   78 (87)
T PF14129_consen   30 SSDDNMIAYYQYIFKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIERL   78 (87)
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            3455566667788888999999999999999999999999999887654


No 46 
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=25.46  E-value=24  Score=28.77  Aligned_cols=50  Identities=20%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             CCCCCcccccccCCCCCCCceeecccCCCCCCcchHHHHHHHHHHHHHHHh
Q 041964          404 EKFKPERFLDNCSSFKGNDFQFIPFGAGRRGCPGATFAIAIVELVLSNLLY  454 (494)
Q Consensus       404 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~e~~~~l~~ll~  454 (494)
                      -+|+|++|-.-=-....+..+.+-|..|.-.|-|..=- -.++.++..++.
T Consensus        35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaKs~-ed~~~av~~~~~   84 (185)
T COG2101          35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAKSV-EDVHRAVKKLAK   84 (185)
T ss_pred             CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccCcH-HHHHHHHHHHHH
Confidence            47899998532111222456899999999999987632 233444444433


No 47 
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=25.04  E-value=3e+02  Score=20.59  Aligned_cols=60  Identities=20%  Similarity=0.205  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCCccccccCCCCCcchhHHHHHHhcCCcEEEecC------CeeEEEecCHHHHHHHHHh
Q 041964           15 NNLPPSPSKLPIIGNLHQLGMTPHRSLTSLARLHGPIMLLQLG------RERTFVISSPNFAREIMKT   76 (494)
Q Consensus        15 ~~~ppgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvi~dp~~~~~i~~~   76 (494)
                      .+.||--..+-++.|++.-  --.+..-++.-+||+|-.+.+|      |.-+||-.|-..++.....
T Consensus        11 ~rlppevnriLyirNLp~~--ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh   76 (124)
T KOG0114|consen   11 IRLPPEVNRILYIRNLPFK--ITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH   76 (124)
T ss_pred             CCCChhhheeEEEecCCcc--ccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence            3455555556666665542  2345566777899999999987      5567777777777766643


No 48 
>PHA01346 hypothetical protein
Probab=23.82  E-value=69  Score=18.92  Aligned_cols=19  Identities=11%  Similarity=0.338  Sum_probs=14.5

Q ss_pred             HhCcH-HHHHHHHHHHHHhC
Q 041964          313 IKHSK-TMKKVQEEVRRIAG  331 (494)
Q Consensus       313 ~~~P~-~q~~lr~Ei~~~~~  331 (494)
                      ..+|+ .|+++.+|+++.+.
T Consensus        27 vsdpdfsqekihaeldsllr   46 (53)
T PHA01346         27 VSDPDFSQEKIHAELDSLLR   46 (53)
T ss_pred             cCCCCccHHHHHHHHHHHHH
Confidence            35677 68899999998764


No 49 
>PF13993 YccJ:  YccJ-like protein
Probab=23.58  E-value=1.2e+02  Score=19.82  Aligned_cols=31  Identities=23%  Similarity=0.257  Sum_probs=24.0

Q ss_pred             HhhchhhHHHHHHHHHHHHhCcHHH-HHHHHH
Q 041964          295 AGGTDTTYTALEWALTELIKHSKTM-KKVQEE  325 (494)
Q Consensus       295 ~ag~~tt~~~l~~~l~~L~~~P~~q-~~lr~E  325 (494)
                      +|..-.|+.-++-+++.|+++.+.+ +++-+|
T Consensus         8 WA~~ReTS~EIAeAIFElA~~dE~lAekIWee   39 (69)
T PF13993_consen    8 WANVRETSIEIAEAIFELANNDEVLAEKIWEE   39 (69)
T ss_pred             HHHHhcCCHHHHHHHHHHhcccHHHHHHHHHc
Confidence            4566678888999999999999865 455554


No 50 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=23.23  E-value=53  Score=21.48  Aligned_cols=8  Identities=50%  Similarity=1.003  Sum_probs=5.7

Q ss_pred             CCcccccc
Q 041964          407 KPERFLDN  414 (494)
Q Consensus       407 ~P~R~~~~  414 (494)
                      ||||||+-
T Consensus        44 DPERWLP~   51 (59)
T PF08492_consen   44 DPERWLPK   51 (59)
T ss_pred             CccccCch
Confidence            77888753


No 51 
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=23.05  E-value=1.6e+02  Score=21.17  Aligned_cols=18  Identities=6%  Similarity=0.300  Sum_probs=15.8

Q ss_pred             CcHHHHHHHHHHHHHhCC
Q 041964          315 HSKTMKKVQEEVRRIAGS  332 (494)
Q Consensus       315 ~P~~q~~lr~Ei~~~~~~  332 (494)
                      .|++++.+++||-+|+..
T Consensus        35 ~p~~l~~lk~eil~VIsK   52 (87)
T PRK13991         35 TPEMMEQMKADLAEVIKR   52 (87)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            599999999999998764


No 52 
>PF13893 RRM_5:  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=23.01  E-value=2e+02  Score=17.96  Aligned_cols=36  Identities=14%  Similarity=0.062  Sum_probs=26.4

Q ss_pred             HHHHHHhcCCcEEEecC----CeeEEEecCHHHHHHHHHh
Q 041964           41 LTSLARLHGPIMLLQLG----RERTFVISSPNFAREIMKT   76 (494)
Q Consensus        41 ~~~~~~~yG~v~~~~~g----~~~~vvi~dp~~~~~i~~~   76 (494)
                      +.+..++||+|-.+.+.    +.-.|-..+++.++.....
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~   40 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQ   40 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHH
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence            35678899998877652    5567777899999988864


No 53 
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.77  E-value=1.6e+02  Score=20.71  Aligned_cols=60  Identities=15%  Similarity=0.157  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCChhhccch---hhHHHHHHhhhcCCCCCccccc--ccccccceeece
Q 041964          317 KTMKKVQEEVRRIAGSKSYINEDHIEKM---FYLKAVIKETLRLHPPVPLLLP--RQATKDVQVGGY  378 (494)
Q Consensus       317 ~~q~~lr~Ei~~~~~~~~~~~~~~l~~l---p~l~a~i~E~lRl~~~~~~~~~--R~~~~~~~l~g~  378 (494)
                      +.|+++.+.+.+ ++.+...|+.++.++   |---..+--+++-+|.. ..+|  |++..+-.++||
T Consensus         2 ~f~~~V~~~l~~-IP~G~v~TYg~iA~~~g~p~~~RaVg~al~~np~~-~~iPcHRVv~s~G~l~~y   66 (80)
T TIGR00589         2 PFQQRVWQALRT-IPYGETKSYGQLAARIGNPKAVRAVGGANGRNPLA-ILVPCHRVIGKNGSLTGY   66 (80)
T ss_pred             hHHHHHHHHHhC-CCCCCcCCHHHHHHHhCCCChHHHHHHHHHhCCCC-CCCCCceeECCCCCCCCC
Confidence            567888888876 555667888877644   33334455566666542 1223  888888778776


No 54 
>PF10777 YlaC:  Inner membrane protein YlaC;  InterPro: IPR019713  The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis []. 
Probab=21.69  E-value=40  Score=26.70  Aligned_cols=39  Identities=15%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHhCCCCCCChhhccchhh
Q 041964          308 ALTELIKHSKTMKKVQEEVRRIAGSKSYINEDHIEKMFY  346 (494)
Q Consensus       308 ~l~~L~~~P~~q~~lr~Ei~~~~~~~~~~~~~~l~~lp~  346 (494)
                      ++-.++++|++-+.+.+++++.+...+.+++-|+-.|.|
T Consensus       114 ai~~iL~~p~V~~~~K~~i~~i~~~Kgei~FYDVy~la~  152 (155)
T PF10777_consen  114 AIDKILQSPQVPDEIKQGIQRIISTKGEISFYDVYSLAY  152 (155)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCceeEEEeEEeec
Confidence            444688999999999999999998888888777665554


No 55 
>PF09926 DUF2158:  Uncharacterized small protein (DUF2158);  InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function. 
Probab=21.56  E-value=86  Score=20.01  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=15.1

Q ss_pred             CCcEEEecCCeeEEEec
Q 041964           49 GPIMLLQLGRERTFVIS   65 (494)
Q Consensus        49 G~v~~~~~g~~~~vvi~   65 (494)
                      |+++++..||..++|..
T Consensus         4 GDvV~LKSGGp~MTV~~   20 (53)
T PF09926_consen    4 GDVVQLKSGGPRMTVTE   20 (53)
T ss_pred             CCEEEEccCCCCeEEEE
Confidence            89999999999999873


No 56 
>PF14550 Peptidase_U35_2:  Putative phage protease XkdF
Probab=20.62  E-value=57  Score=25.14  Aligned_cols=22  Identities=32%  Similarity=0.518  Sum_probs=18.0

Q ss_pred             ccccccceeeceecCCCCEEEe
Q 041964          367 RQATKDVQVGGYNIPAKSRVII  388 (494)
Q Consensus       367 R~~~~~~~l~g~~ip~g~~v~~  388 (494)
                      -++++|.+++|-.||+||.|+.
T Consensus        71 ~I~~~d~~~~g~~i~~GtWv~~   92 (122)
T PF14550_consen   71 YIAPEDMEIGGETIPKGTWVVG   92 (122)
T ss_pred             EecCCCcccCCeeecceEEEEE
Confidence            3556789999999999998853


No 57 
>COG4828 Predicted membrane protein [Function unknown]
Probab=20.37  E-value=2.1e+02  Score=21.21  Aligned_cols=48  Identities=15%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             HHhhchhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH-------------hCCCCCCChhhccch
Q 041964          294 FAGGTDTTYTALEWALTELIKHSKTMKKVQEEVRRI-------------AGSKSYINEDHIEKM  344 (494)
Q Consensus       294 ~~ag~~tt~~~l~~~l~~L~~~P~~q~~lr~Ei~~~-------------~~~~~~~~~~~l~~l  344 (494)
                      +.+|.-+.+.   -.+....+.|+..+-+|.|.-..             ++.-+.|+++|+.++
T Consensus        27 iyGglra~~~---ifl~e~~k~p~~~~~iRkelt~ki~fgLEf~i~adil~T~r~Pt~edL~~L   87 (113)
T COG4828          27 IYGGLRAVAM---IFLREVHKKPEVYESIRKELTNKIAFGLEFLIAADILETARAPTLEDLSKL   87 (113)
T ss_pred             HHhHHHHHHH---HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHh
Confidence            3455544332   23378888999999999998654             233355666666554


Done!