Query 041965
Match_columns 166
No_of_seqs 111 out of 501
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 46.1 8.1 0.00028 23.3 1.3 14 132-145 15-28 (44)
2 2l2t_A Receptor tyrosine-prote 32.2 18 0.00061 21.7 1.2 14 132-145 14-27 (44)
3 3cx5_I Cytochrome B-C1 complex 20.7 53 0.0018 21.2 2.0 31 131-165 17-47 (65)
4 1pp9_J Ubiquinol-cytochrome C 15.5 97 0.0033 19.7 2.3 32 130-165 20-51 (62)
5 1y8q_A Ubiquitin-like 1 activa 9.2 51 0.0018 27.3 -0.8 12 128-139 299-310 (346)
6 3dsh_A IRF-5, interferon regul 9.1 1.7E+02 0.0058 23.4 2.3 29 32-72 164-192 (246)
7 3arc_X Photosystem II PSBX pro 8.8 1.4E+02 0.0049 17.3 1.3 19 122-142 4-22 (39)
8 3r8s_F 50S ribosomal protein L 8.6 2.2E+02 0.0075 21.6 2.7 25 111-135 82-106 (177)
9 3lti_A DNA-directed RNA polyme 8.4 99 0.0034 25.6 0.7 27 102-128 33-63 (296)
10 1mji_A 50S ribosomal protein L 8.3 2.1E+02 0.0073 21.8 2.5 25 111-135 86-110 (182)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=46.07 E-value=8.1 Score=23.26 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=9.4
Q ss_pred hhhhcceeehhhhh
Q 041965 132 CAVLGGTFALTGML 145 (166)
Q Consensus 132 cAIiGGvftv~gii 145 (166)
.++|||++.++-++
T Consensus 15 ~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 15 TGMVGALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 46777777776555
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.20 E-value=18 Score=21.75 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=9.6
Q ss_pred hhhhcceeehhhhh
Q 041965 132 CAVLGGTFALTGML 145 (166)
Q Consensus 132 cAIiGGvftv~gii 145 (166)
.++|||++.++-++
T Consensus 14 ~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 14 AGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHH
Confidence 46777887776555
No 3
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=20.69 E-value=53 Score=21.18 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=20.4
Q ss_pred HhhhhcceeehhhhhHHHHHHHHHHHcCCcccCCC
Q 041965 131 LCAVLGGTFALTGMLDRWMYRLLEALTKPSARSVL 165 (166)
Q Consensus 131 lcAIiGGvftv~giiD~~~~~~~~~~~k~~~~~~~ 165 (166)
+.+|++|.|+.-..+|..+..+.+. .|+|||
T Consensus 17 ~~~I~~gaf~fE~~fd~~~d~iw~~----~NkGKl 47 (65)
T 3cx5_I 17 VGTIFAGAFVFQTVFDTAITSWYEN----HNKGKL 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HTTTTS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHh----ccCCCC
Confidence 5678888888777777766555444 455554
No 4
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=15.50 E-value=97 Score=19.74 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=20.9
Q ss_pred HHhhhhcceeehhhhhHHHHHHHHHHHcCCcccCCC
Q 041965 130 RLCAVLGGTFALTGMLDRWMYRLLEALTKPSARSVL 165 (166)
Q Consensus 130 ~lcAIiGGvftv~giiD~~~~~~~~~~~k~~~~~~~ 165 (166)
=+.+|++|.|+.-..+|.....+.+. .|+|||
T Consensus 20 y~~~i~~gaf~fe~~~d~~~d~iw~~----~NkGKl 51 (62)
T 1pp9_J 20 FALTIVVGALFFERAFDQGADAIYEH----INEGKL 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HTTTTS
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHh----ccCCCC
Confidence 35678888888777777766655544 455543
No 5
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=9.22 E-value=51 Score=27.29 Aligned_cols=12 Identities=42% Similarity=1.046 Sum_probs=8.9
Q ss_pred HHHHhhhhccee
Q 041965 128 ITRLCAVLGGTF 139 (166)
Q Consensus 128 lt~lcAIiGGvf 139 (166)
|..+||||||+.
T Consensus 299 l~pv~AiiGGi~ 310 (346)
T 1y8q_A 299 MAPVCAVVGGIL 310 (346)
T ss_dssp CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 567788888875
No 6
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=9.11 E-value=1.7e+02 Score=23.41 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=18.4
Q ss_pred eEeeeCCCCCCCCCCCCCceeeecCCceeEEEEEEEEEEEE
Q 041965 32 HDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEY 72 (166)
Q Consensus 32 ~~lsFG~~~p~~~~PLdg~~~i~~~~~~~~~YflkvVPT~y 72 (166)
=.|.||++.|+. .|.... ..+ +||||+.-
T Consensus 164 I~LcFGEe~pd~-~p~ekk-------LI~----VqV~p~~a 192 (246)
T 3dsh_A 164 IFFCFGEEWPDR-KPREKK-------LIT----VQVVPVAA 192 (246)
T ss_dssp EEEEESSCSSCS-SCGGGC-------SEE----EEEEEHHH
T ss_pred EEEEECCcCCCC-Cccccc-------EEE----EEEEHHHH
Confidence 479999998863 355433 222 48888754
No 7
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=8.85 E-value=1.4e+02 Score=17.29 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=13.0
Q ss_pred ccHHHHHHHHhhhhcceeehh
Q 041965 122 RSFLHLITRLCAVLGGTFALT 142 (166)
Q Consensus 122 ~s~~~flt~lcAIiGGvftv~ 142 (166)
+|+..||.++.| ||+..++
T Consensus 4 pSL~nFl~Sl~a--G~vvvv~ 22 (39)
T 3arc_X 4 PSLKGFFIGLLS--GAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHH--HHHHHHH
T ss_pred hhHHHHHHHHHH--HHHHHHH
Confidence 578889988854 6655444
No 8
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=8.60 E-value=2.2e+02 Score=21.62 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.5
Q ss_pred cceEEEEEeeeccHHHHHHHHhhhh
Q 041965 111 SPITVTIKEERRSFLHLITRLCAVL 135 (166)
Q Consensus 111 SPi~V~~~~~r~s~~~flt~lcAIi 135 (166)
.||.++++-.....++||-+++.++
T Consensus 82 ~piG~kVTLRg~~m~~FL~kli~~v 106 (177)
T 3r8s_F 82 YPIGCKVTLRGERMWEFFERLITIA 106 (177)
T ss_dssp CEEEEEEEECSHHHHHHHHHHHHTT
T ss_pred CEeeEEEEEccHHHHHHHHHHHHHh
Confidence 3999999999999999999998775
No 9
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=8.43 E-value=99 Score=25.62 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=14.8
Q ss_pred ceEEEEEeccc---eEEEEEeeec-cHHHHH
Q 041965 102 PAVYFLYDLSP---ITVTIKEERR-SFLHLI 128 (166)
Q Consensus 102 PgI~F~Yd~SP---i~V~~~~~r~-s~~~fl 128 (166)
-|.|+.|++.+ +-|.+...|+ |..-||
T Consensus 33 RGsWlefe~d~~d~~~vrIdr~rK~p~t~lL 63 (296)
T 3lti_A 33 RGSWLDFEFDPKDNLFVRIDRRRKLPATIIL 63 (296)
T ss_dssp BSCCEEEEECTTSCEEEEETTCCCEETHHHH
T ss_pred CCceEEEEEcCCCeEEEEEcCcccchHHHHH
Confidence 35566666655 5666655553 444443
No 10
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=8.30 E-value=2.1e+02 Score=21.82 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.4
Q ss_pred cceEEEEEeeeccHHHHHHHHhhhh
Q 041965 111 SPITVTIKEERRSFLHLITRLCAVL 135 (166)
Q Consensus 111 SPi~V~~~~~r~s~~~flt~lcAIi 135 (166)
.||.+++|-+....|+||-+++.++
T Consensus 86 ~pIG~kVTLRg~~my~FL~rll~v~ 110 (182)
T 1mji_A 86 MPIGLRVTLRRDRMWIFLEKLLNVA 110 (182)
T ss_dssp SEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEEccHHHHHHHHHHHHHh
Confidence 5889999999999999999998873
Done!