Query 041965
Match_columns 166
No_of_seqs 111 out of 501
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 21:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041965.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041965hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5i1 f.23.14.1 (I:4-58) Sub 15.0 42 0.0031 19.5 2.0 27 131-157 15-41 (55)
2 d1vg0a1 c.3.1.3 (A:3-444,A:558 14.4 37 0.0027 28.0 2.2 26 123-148 377-402 (491)
3 d1ppjw_ f.23.14.1 (W:) Subunit 11.8 68 0.0049 19.0 2.3 28 130-157 20-47 (62)
4 d1qwta_ b.26.1.3 (A:) Interfer 10.4 1E+02 0.0074 22.6 3.4 28 33-72 157-184 (239)
5 d1iq4a_ d.77.1.1 (A:) Ribosoma 8.8 92 0.0067 21.8 2.5 25 111-135 83-107 (179)
6 d1mjia_ d.77.1.1 (A:) Ribosoma 8.5 1E+02 0.0073 21.7 2.6 25 111-135 84-108 (180)
7 d1s3si_ d.15.1.2 (I:) p47 {Rat 7.9 12 0.00088 21.7 -2.4 12 23-34 34-45 (50)
8 d1a04a2 c.23.1.1 (A:5-142) Nit 7.3 1.4E+02 0.01 18.9 2.8 31 111-141 1-31 (138)
9 d1vqod1 d.77.1.1 (D:10-174) Ri 6.8 1.1E+02 0.008 21.2 2.1 26 111-136 58-83 (165)
10 d1auua_ b.35.2.1 (A:) SacY {Ba 6.4 70 0.0051 18.3 0.6 8 6-13 25-32 (55)
No 1
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.01 E-value=42 Score=19.51 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=18.0
Q ss_pred HhhhhcceeehhhhhHHHHHHHHHHHc
Q 041965 131 LCAVLGGTFALTGMLDRWMYRLLEALT 157 (166)
Q Consensus 131 lcAIiGGvftv~giiD~~~~~~~~~~~ 157 (166)
+.+|++|.|+.=..+|..+.++.+..+
T Consensus 15 ~~tI~~gAf~fe~~fD~~~d~~we~~N 41 (55)
T d3cx5i1 15 VGTIFAGAFVFQTVFDTAITSWYENHN 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888888777666666655554443
No 2
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.37 E-value=37 Score=27.96 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=18.1
Q ss_pred cHHHHHHHHhhhhcceeehhhhhHHH
Q 041965 123 SFLHLITRLCAVLGGTFALTGMLDRW 148 (166)
Q Consensus 123 s~~~flt~lcAIiGGvftv~giiD~~ 148 (166)
-+-+=.-|+||+-||+|++-.-|+.+
T Consensus 377 EipQ~FcR~~AV~Gg~Y~L~~~i~~i 402 (491)
T d1vg0a1 377 ELPQCFCRMCAVFGGIYCLRHSVQCL 402 (491)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEE
T ss_pred hHHHHHHHHHHhcCcEEEcCCccceE
Confidence 44566678899999998876555443
No 3
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.78 E-value=68 Score=19.00 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=18.1
Q ss_pred HHhhhhcceeehhhhhHHHHHHHHHHHc
Q 041965 130 RLCAVLGGTFALTGMLDRWMYRLLEALT 157 (166)
Q Consensus 130 ~lcAIiGGvftv~giiD~~~~~~~~~~~ 157 (166)
=+.+|++|.|..=..+|.....+.+..+
T Consensus 20 f~~tI~~gAf~fE~~fD~~~d~iwe~~N 47 (62)
T d1ppjw_ 20 FALTIVVGALFFERAFDQGADAIYEHIN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888888777666666655444443
No 4
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.41 E-value=1e+02 Score=22.64 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=19.1
Q ss_pred EeeeCCCCCCCCCCCCCceeeecCCceeEEEEEEEEEEEE
Q 041965 33 DLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEY 72 (166)
Q Consensus 33 ~lsFG~~~p~~~~PLdg~~~i~~~~~~~~~YflkvVPT~y 72 (166)
.|.||+..|.. .|++..-.+ ++|||+.-
T Consensus 157 ~lcFGeewpd~-~p~ekkLI~-----------VqV~p~~a 184 (239)
T d1qwta_ 157 WFCVGESWPQD-QPWTKRLVM-----------VKVVPTCL 184 (239)
T ss_dssp EEEECCSCTTC-CTTTTCCEE-----------EEEEEHHH
T ss_pred EEEeccccCCC-CCcccceEE-----------EEEEHHHH
Confidence 69999998854 577654221 58888654
No 5
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.83 E-value=92 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.5
Q ss_pred cceEEEEEeeeccHHHHHHHHhhhh
Q 041965 111 SPITVTIKEERRSFLHLITRLCAVL 135 (166)
Q Consensus 111 SPi~V~~~~~r~s~~~flt~lcAIi 135 (166)
.|+.+++|-++...|+||-+++-++
T Consensus 83 ~piG~kVTLRg~~m~~FL~rli~iv 107 (179)
T d1iq4a_ 83 MPIGAKVTLRGERMYEFLDKLISVS 107 (179)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred ceeEEEeeeccchHHHHHHHHHHhc
Confidence 4889999999999999999999875
No 6
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]}
Probab=8.46 E-value=1e+02 Score=21.68 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.6
Q ss_pred cceEEEEEeeeccHHHHHHHHhhhh
Q 041965 111 SPITVTIKEERRSFLHLITRLCAVL 135 (166)
Q Consensus 111 SPi~V~~~~~r~s~~~flt~lcAIi 135 (166)
.|+.++++-++...|+||-+++.++
T Consensus 84 ~piG~kvTLRg~~m~~FL~rli~i~ 108 (180)
T d1mjia_ 84 MPIGLRVTLRRDRMWIFLEKLLNVA 108 (180)
T ss_dssp SEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CceeEEEeecHHHHHHHHHHHHHHH
Confidence 5899999999999999999999774
No 7
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.88 E-value=12 Score=21.67 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=6.3
Q ss_pred CcCcccEEeeEe
Q 041965 23 KNVNVSHVIHDL 34 (166)
Q Consensus 23 ~~~N~SH~I~~l 34 (166)
.++|.||+|.++
T Consensus 34 ~rFN~~Htv~di 45 (50)
T d1s3si_ 34 QKFNHSHRISDI 45 (50)
T ss_dssp ----CCCCHHHH
T ss_pred EEccCccCHHHH
Confidence 378999998654
No 8
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=7.28 E-value=1.4e+02 Score=18.88 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=26.2
Q ss_pred cceEEEEEeeeccHHHHHHHHhhhhcceeeh
Q 041965 111 SPITVTIKEERRSFLHLITRLCAVLGGTFAL 141 (166)
Q Consensus 111 SPi~V~~~~~r~s~~~flt~lcAIiGGvftv 141 (166)
.|++|.+-++...+..-+.+++.-.|++..|
T Consensus 1 ePi~VLiVDD~~~~r~~l~~~L~~~~~~~~v 31 (138)
T d1a04a2 1 EPATILLIDDHPMLRTGVKQLISMAPDITVV 31 (138)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCcEEE
Confidence 4999999999988888888888877877665
No 9
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=6.82 E-value=1.1e+02 Score=21.25 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=22.8
Q ss_pred cceEEEEEeeeccHHHHHHHHhhhhc
Q 041965 111 SPITVTIKEERRSFLHLITRLCAVLG 136 (166)
Q Consensus 111 SPi~V~~~~~r~s~~~flt~lcAIiG 136 (166)
.|+.+++|-.....++||-+++.+++
T Consensus 58 ~piG~kVTLRg~~m~~FL~rll~~~~ 83 (165)
T d1vqod1 58 DPIGAKVTLRDEMAEEFLQTALPLAE 83 (165)
T ss_dssp SEEEEEEEECTHHHHHHHHTTGGGSC
T ss_pred CeEEEEEEEechhHHHHHHHHhcccc
Confidence 48889999888999999999998774
No 10
>d1auua_ b.35.2.1 (A:) SacY {Bacillus subtilis [TaxId: 1423]}
Probab=6.39 E-value=70 Score=18.33 Aligned_cols=8 Identities=38% Similarity=0.771 Sum_probs=5.4
Q ss_pred Ccccccch
Q 041965 6 RRGLGFNP 13 (166)
Q Consensus 6 ~~g~g~~~ 13 (166)
+||+||..
T Consensus 25 GkGIGF~k 32 (55)
T d1auua_ 25 GAGIAFNK 32 (55)
T ss_dssp CTTSSTTC
T ss_pred EccceeCC
Confidence 57777754
Done!