BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041966
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA GHLE+V LLEA + K D NGRTPL L + GHLE+ + LL+ D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV- 61
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259
+++D GRTPLH A G + ++ +L + + + +G T LHL +N E VK L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 260 MET 262
+E
Sbjct: 121 LEA 123
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162
N + L++A G L+VVK LL + D T LH+AA GHLE+V LLEA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 163 EFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNII 222
+ KD NGRTPL L + GHLE+ + LL+ D+ +++D GRTPLH A G + ++
Sbjct: 60 DVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVV 117
Query: 223 DEIL 226
+L
Sbjct: 118 KLLL 121
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 71/126 (56%), Gaps = 9/126 (7%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLE---TPVHEACREGRLHIVRLFLETDS 94
T LHLAAR GH LE++KL E A N K + TP+H A R G L +V+L LE +
Sbjct: 4 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 95 WVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIV 154
V K ++N + L++A G L+VVK LL + D T LH+AA GHLE+V
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 155 NELLEA 160
LLEA
Sbjct: 118 KLLLEA 123
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 171 NGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230
NGRTPL L + GHLE+ + LL+ D+ +++D GRTPLH A G + ++ +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 231 ESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
+ + + +G T LHL +N E VK L+E VN D +G T L
Sbjct: 60 DVN-AKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPL 105
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLE---TPVHEACREGRLHIVRLFLETDS 94
T LHLAAR GH LE++KL E A N K + TP+H A R G L +V+L LE +
Sbjct: 70 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Query: 95 W 95
+
Sbjct: 126 Y 126
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 14/228 (6%)
Query: 38 TVLHLAARYGHEELALEILK--LCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSW 95
T LH+A+ GH + +L+ P + +N K+ETP+H A R G + + L+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 96 VVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVN 155
V K ++ ++ L+ A G ++VK LL + L G T LH+AA GH+E V
Sbjct: 73 VNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG-HTPLHIAAREGHVETVL 130
Query: 156 ELL--EARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWA 213
LL EA KK G TPL + + G + + LL+ D +++ N G TPLH A
Sbjct: 131 ALLEKEASQACMTKK---GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN-GLTPLHVA 186
Query: 214 TIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLME 261
++I+ +L S +G T LH+ K NQ E + L++
Sbjct: 187 VHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 116/256 (45%), Gaps = 22/256 (8%)
Query: 12 GETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLE 71
G P NL+Q+ V + T LH+AAR GH E+A +L+ ++ A + +
Sbjct: 25 GHLPIVKNLLQRGASPNVSNV--KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-Q 81
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRN-----KESALYVACERGRLDVVKQLLNY 126
TP+H A R G ++V+L LE ++ N N + L++A G ++ V LL
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNA------NPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 127 PSVSLLEMDDGLTTSLHVAASAGHLEIVNELLE--ARPEFTWKKDPNGRTPLTLCSSKGH 184
+ G T LHVAA G + + LLE A P K NG TPL + +
Sbjct: 136 EASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGK---NGLTPLHVAVHHNN 191
Query: 185 LEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVL 244
L+I + LL S N G TPLH A + +V + +L S+ ++ G T L
Sbjct: 192 LDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPL 249
Query: 245 HLGVKNNQYEAVKHLM 260
HL + E V L+
Sbjct: 250 HLAAQEGHAEMVALLL 265
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 126/270 (46%), Gaps = 11/270 (4%)
Query: 11 KGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKL 70
+G L L++K+ T G T LH+AA+YG +A +L+ AA L
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGF--TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL 180
Query: 71 ETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVS 130
TP+H A L IV+L L H N + L++A ++ +++V + LL Y +
Sbjct: 181 -TPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 131 LLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRE 190
E G+T LH+AA GH E+V LL + + +G TPL L + +GH+ +
Sbjct: 239 NAESVQGVT-PLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADV 296
Query: 191 LLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKN 250
L+K + + G TPLH A+ G + ++ +L + + +T G + LH +
Sbjct: 297 LIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQAAQQ 354
Query: 251 NQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
+ V L++ + V++ DG T L
Sbjct: 355 GHTDIVTLLLKNGASPNEVSS---DGTTPL 381
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 4/185 (2%)
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSL 131
+P+H A G + I + ++ + + + ++ + L A E L+ VK L+ ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 132 LEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITREL 191
+ +G +T LH+AA GH E+V LL +D G TP+ + H+++ + L
Sbjct: 72 PKDAEG-STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 192 LKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNN 251
L D++ +DNE LHWA G V+I + +L+ + + +HG++ LH+ + N
Sbjct: 131 LSKGSDINI-RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAAREN 188
Query: 252 QYEAV 256
+Y+ V
Sbjct: 189 RYDCV 193
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 171 NGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230
N R+PL + GH++I L++ ++ + +++ RTPL A + + ++
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLIKAG- 67
Query: 231 ESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNT 278
+ + G T LHL K YE V++L+ N VN D+ G T
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS--NGQMDVNCQDDGGWT 113
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWV 96
N LH AA G ++A EIL L A N ++P+H A RE R V LFL DS V
Sbjct: 145 NICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 97 VHKMNRNKESALYVA 111
K N+ E+ L A
Sbjct: 204 TLK-NKEGETPLQCA 217
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 37/183 (20%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWV 96
+T LHLAA+ GH E +V+ L
Sbjct: 78 STCLHLAAKKGHYE----------------------------------VVQYLLSNGQMD 103
Query: 97 VHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNE 156
V+ + + + A E +D+VK LL+ S + D+ LH AA +G ++I
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 157 LLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIK 216
LL A+ + + +G +PL + + + + L D D+ + ++ EG TPL A++
Sbjct: 163 LLAAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASLN 220
Query: 217 GRV 219
+V
Sbjct: 221 SQV 223
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA GHLE+V LLEA + K D NGRTPL L + GHLE+ + LL+ D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV- 61
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEIL 226
+++D GRTPLH A G + ++ +L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 171 NGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230
NGRTPL L + GHLE+ + LL+ D+ +++D GRTPLH A G + ++ +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 231 ESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262
+ + + +G T LHL +N E VK L+E
Sbjct: 60 DVNA-KDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162
N + L++A G L+VVK LL + D T LH+AA GHLE+V LLEA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 163 EFTWKKDPNGRTPLTLCSSKGHLEITRELL 192
+ K D NGRTPL L + GHLE+ + LL
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSL 131
TP+H A R G L +V+L LE + V K ++N + L++A G L+VVK LL +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE-AGADV 61
Query: 132 LEMDDGLTTSLHVAASAGHLEIVNELLEA 160
D T LH+AA GHLE+V LLEA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEK---LETPVHEACREGRLHIVRLFLETDS 94
T LHLAAR GH LE++KL E A N K TP+H A R G L +V+L LE +
Sbjct: 4 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 95 WVVHKMNRNKESALYVACERGRLDVVKQLL 124
V K ++N + L++A G L+VVK LL
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEK---LETPVHEACREGRLHIVRLFLETDS 94
T LHLAAR GH LE++KL E A N K TP+H A R G L +V+L LE +
Sbjct: 37 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 95 W 95
+
Sbjct: 93 Y 93
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ + D T LH+AA GHLEIV LL+A + KD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNA-KD 65
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229
+G TPL L + +GHLEI LLK D+ +++D +G TPLH A +G + I++ +L
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 230 LESSEIRTLHGETVLHLGVKNN 251
+ + + G+T L + N
Sbjct: 125 ADVN-AQDKFGKTPFDLAIDNG 145
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G ++ + IL + A ++ TP+H A REG L IV + L+ + V K ++
Sbjct: 9 AARAGQDD-EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162
+ + L++A G L++V+ LL + + DG T LH+AA GHLEIV LL+A
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGA 125
Query: 163 EFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193
+ +D G+TP L G+ +I L K
Sbjct: 126 DVNA-QDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 138 LTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPD 197
L L AA AG + V +L A KD +G TPL L + +GHLEI LLK D
Sbjct: 2 LGKKLLEAARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 198 LSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVK 257
+ +++D +G TPLH A +G + I++ +L + + + G T LHL + E V+
Sbjct: 61 V-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVE 118
Query: 258 HLMETLNTTKLVNTPDNDGNT 278
L L VN D G T
Sbjct: 119 VL---LKAGADVNAQDKFGKT 136
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ + D T LH+AA GHLEIV LL+A + KD
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNA-KD 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229
+G TPL L + +GHLEI LLK D+ +++D +G TPLH A +G + I++ +L
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 230 LESSEIRTLHGETVLHLGVKNN 251
+ + + G+T + + N
Sbjct: 137 ADVN-AQDKFGKTAFDISIDNG 157
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A KD +G TPL L + +GHLEI LLK D+ +++D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDK 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+G TPLH A +G + I++ +L + + + G T LHL + E V+ L L
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNTIL 280
VN D G T
Sbjct: 135 AGADVNAQDKFGKTAF 150
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G ++ + IL + A ++ TP+H A REG L IV + L+ + V K ++
Sbjct: 21 AARAGQDD-EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 78
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162
+ + L++A G L++V+ LL + + DG T LH+AA GHLEIV LL+A
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGA 137
Query: 163 EFTWKKDPNGRTPLTLCSSKGHLEIT 188
+ +D G+T + G+ ++
Sbjct: 138 DVNA-QDKFGKTAFDISIDNGNEDLA 162
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ ++L E G+ L+ ++ + G T LHLAAR GH E+ +LK
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGA 71
Query: 61 EMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVV 120
++ A + TP+H A REG L IV + L+ + V K +++ + L++A G L++V
Sbjct: 72 DVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIV 129
Query: 121 KQLL 124
+ LL
Sbjct: 130 EVLL 133
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ + D T LH+AA GHLEIV LL+A + KD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNA-KD 65
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229
+G TPL L + +GHLEI LLK D+ +++D +G TPLH A +G + I++ +L
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 230 LE 231
+
Sbjct: 125 AD 126
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G ++ + IL + A ++ TP+H A REG L IV + L+ + V K ++
Sbjct: 9 AARAGQDD-EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162
+ + L++A G L++V+ LL + + DG T LH+AA GHLEIV LL+A
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGA 125
Query: 163 EFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193
+ +D G+TP L +GH +I L K
Sbjct: 126 DVNA-QDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A KD +G TPL L + +GHLEI LLK D+ +++D
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDK 66
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+G TPLH A +G + I++ +L + + + G T LHL + E V+ L L
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVL---LK 122
Query: 265 TTKLVNTPDNDGNT 278
VN D G T
Sbjct: 123 AGADVNAQDKFGKT 136
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA GHLEIV LL+ + KD G TPL L + +GHLEI LLK D++
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVN-AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259
+S D+ G TPLH A +G + I+ E+L N + G+T + + N E + +
Sbjct: 108 AS-DSHGFTPLHLAAKRGHLEIV-EVLLKNGADVNAQDKFGKTAFDISIDNGN-EDLAEI 164
Query: 260 METLN 264
++ LN
Sbjct: 165 LQKLN 169
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A +D G TPL L + GHLEI LLK D+ +++D+
Sbjct: 21 AARAGQDDEV-RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV-NAKDS 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPLH A +G + I+ E+L N HG T LHL K E V+ L L
Sbjct: 79 LGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNTIL 280
VN D G T
Sbjct: 135 NGADVNAQDKFGKTAF 150
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ ++L E G+ L+ ++ + G T LHLAA +GH E+ +LK
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFTGW--TPLHLAAHFGHLEIVEVLLKNGA 71
Query: 61 EMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVV 120
++ A + + TP+H A R G L IV + L+ + V+ + + + L++A +RG L++V
Sbjct: 72 DVNAKDSLGV-TPLHLAARRGHLEIVEVLLKNGA-DVNASDSHGFTPLHLAAKRGHLEIV 129
Query: 121 KQLL 124
+ LL
Sbjct: 130 EVLL 133
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA G V+ LE + V+ + + ++ L++A E G +VVK LL+ + +
Sbjct: 10 EAAENGNKDRVKDLLENGA-DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
DG T LH+AA GH E+V LL + K D +G+TPL L + GH E+ + LL
Sbjct: 69 DG-KTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 196 PDLSSSQDNEGRTPLHWATIKGRVNII 222
D ++S D++GRTPL A G ++
Sbjct: 127 ADPNTS-DSDGRTPLDLAREHGNEEVV 152
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA G+ + V +LLE + D +G+TPL L + GH E+ + LL D +++D+
Sbjct: 11 AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDS 68
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+G+TPLH A G ++ +LS + + + G+T LHL +N E VK L L+
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVVKLL---LS 124
Query: 265 TTKLVNTPDNDGNTIL 280
NT D+DG T L
Sbjct: 125 QGADPNTSDSDGRTPL 140
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AA G+++ ++L+ ++ A+ ++ +TP+H A G +V+L L + K +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDG-KTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLE--A 160
K + L++A E G +VVK LL+ + + DG T LH+AA GH E+V LL A
Sbjct: 70 GK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSDG-KTPLHLAAENGHKEVVKLLLSQGA 127
Query: 161 RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
P + D +GRTPL L G+ E+ + L K
Sbjct: 128 DPNTS---DSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ +RL E G +L++ ++ G T LHLAA GH+ E++KL
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADVNASDSDGK--TPLHLAAENGHK----EVVKLLL 57
Query: 61 EMLAATNEK---LETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRL 117
A N K +TP+H A G +V+L L + K + K + L++A E G
Sbjct: 58 SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHK 116
Query: 118 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEAR 161
+VVK LL+ + DG T L +A G+ E+V +LLE +
Sbjct: 117 EVVKLLLSQGADPNTSDSDG-RTPLDLAREHGNEEVV-KLLEKQ 158
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ + D T LH+AAS GHLEIV LL+ + D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDG--YTPLHLAASNGHLEIVEVLLKNGADVN-ASD 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEIL 226
G TPL L ++ GHLEI LLK D+ ++ DN+G TPLH A G + I++ +L
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A D +G TPL L +S GHLEI LLK D+++S D
Sbjct: 21 AARAGQDDEV-RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-DL 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLME 261
G TPLH A G + I++ +L + + G T LHL K E V+ L++
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIVEVLLK 134
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA GH E+ +LK ++ A+ + TP+H A G L IV + L+ + V
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGI-TPLHLAAATGHLEIVEVLLKHGAD-V 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPS 128
+ + + + L++A + G L++V+ LL + +
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA GH E+ +LK ++ A N+ TP+H A + G L IV + L+ + V
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDG-HTPLHLAAKYGHLEIVEVLLKHGAD-V 139
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 16/141 (11%)
Query: 76 EACREGRLHIVRLFLETDS------WVVHKMNRNKESALYVACERGRLDVVKQLLNYPSV 129
EA R G+ VR+ + + W+ H + L++A + G L++V+ LL Y +
Sbjct: 20 EAARAGQDDEVRILMANGADVNATDWLGH-------TPLHLAAKTGHLEIVEVLLKYGA- 71
Query: 130 SLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITR 189
+ D+ T LH+AA GHLEIV LL+ + KD G TPL L + GHLEI
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVE 130
Query: 190 ELLKMDPDLSSSQDNEGRTPL 210
LLK D+ ++QD G+T
Sbjct: 131 VLLKYGADV-NAQDKFGKTAF 150
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA+ GH E+ +LK ++ A N TP+H A G L IV + L+ + V
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG-ATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPS 128
K + + L++A G L++V+ LL Y +
Sbjct: 108 AK-DYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 81 GRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTT 140
G+L ++ + D + + +++ +AL+ AC G ++V+ LL V + + DD +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWS 75
Query: 141 SLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK--MDPDL 198
LH+AASAG EIV LL + + NG TPL +SK EI LL+ +PD
Sbjct: 76 PLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD- 133
Query: 199 SSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKH 258
++D+ T +H A KG + ++ IL S+ I+ G T LHL + E K
Sbjct: 134 --AKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 259 LM 260
L+
Sbjct: 191 LV 192
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Query: 66 TNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLN 125
T++ T +H AC G IV L+ V K + S L++A GR ++VK LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHIAASAGRDEIVKALL- 93
Query: 126 YPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLE--ARPEFTWKKDPNGRTPLTLCSSKG 183
+ ++ T LH AAS EI LLE A P+ KD T + ++KG
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDATAMHRAAAKG 150
Query: 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVN----IIDEILSVNLESSEIRT 237
+L++ LL ++ QD EG TPLH A + RV ++ + S+ +E+ E +T
Sbjct: 151 NLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRT 174
G+LD +K+ + D T+LH A SAGH EIV LL+ KD G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWS 75
Query: 175 PLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSE 234
PL + +S G EI + LL +++ N G TPLH+A K R I +L + +
Sbjct: 76 PLHIAASAGRDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGG-ANPD 133
Query: 235 IRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
+ + T +H + V L+ +T N D +GNT L
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKAST---NIQDTEGNTPL 176
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 13/199 (6%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLE---TPVHEACREGRLHIVRLFLETDS 94
T LH A GH E+ +L+L N+K + +P+H A GR IV+ L +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 95 WVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIV 154
V+ +N+N + L+ A + R ++ LL + D T++H AA+ G+L++V
Sbjct: 98 H-VNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 155 NELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214
+ LL + T +D G TPL L + +E + L+ + ++ E +TPL A
Sbjct: 156 HILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVA- 212
Query: 215 IKGRVNIIDEILSVNLESS 233
KG + +I + L+ E+S
Sbjct: 213 -KGGLGLILKRLAEGEEAS 230
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 81 GRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTT 140
G+L ++ + D + + +++ +AL+ AC G ++V+ LL V + + DD +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWS 75
Query: 141 SLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK--MDPDL 198
LH+AASAG EIV LL + + NG TPL +SK EI LL+ +PD
Sbjct: 76 PLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD- 133
Query: 199 SSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKH 258
++D+ T +H A KG + ++ IL S+ I+ G T LHL + E K
Sbjct: 134 --AKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 259 LM 260
L+
Sbjct: 191 LV 192
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRT 174
G+LD +K+ + D T+LH A SAGH EIV LL+ KD G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWS 75
Query: 175 PLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSE 234
PL + +S G EI + LL +++ N G TPLH+A K R I +L + +
Sbjct: 76 PLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGG-ANPD 133
Query: 235 IRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
+ + T +H + V L+ +T N D +GNT L
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKAST---NIQDTEGNTPL 176
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 13/199 (6%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLE---TPVHEACREGRLHIVRLFLETDS 94
T LH A GH E+ +L+L N+K + +P+H A G IV+ L +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 95 WVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIV 154
V+ +N+N + L+ A + R ++ LL + D T++H AA+ G+L++V
Sbjct: 98 H-VNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 155 NELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214
+ LL + T +D G TPL L + +E + L+ + ++ E +TPL A
Sbjct: 156 HILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVA- 212
Query: 215 IKGRVNIIDEILSVNLESS 233
KG + +I + L+ E+S
Sbjct: 213 -KGGLGLILKRLAEGEEAS 230
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 81 GRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTT 140
G+L ++ + D + + +++ +AL+ AC G ++V+ LL V + + DD +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWS 75
Query: 141 SLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK--MDPDL 198
LH+AASAG EIV LL + + NG TPL +SK EI LL+ +PD
Sbjct: 76 PLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD- 133
Query: 199 SSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKH 258
++D+ T +H A KG + +I IL S+ I+ G T LHL + E K
Sbjct: 134 --AKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 190
Query: 259 LM 260
L+
Sbjct: 191 LV 192
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRT 174
G+L+ +K+ + D T+LH A SAGH EIV LL+ KD G +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWS 75
Query: 175 PLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSE 234
PL + +S G EI + LL +++ N G TPLH+A K R I +L + +
Sbjct: 76 PLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGG-ANPD 133
Query: 235 IRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
+ + T +H + + L+ +T N D +GNT L
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKAST---NIQDTEGNTPL 176
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLE---TPVHEACREGRLHIVRLFLETDS 94
T LH A GH E+ +L+L N+K + +P+H A GR IV+ L +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 95 WVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIV 154
V+ +N+N + L+ A + R ++ LL + D T++H AA+ G+L+++
Sbjct: 98 Q-VNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 155 NELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214
+ LL + T +D G TPL L + +E + L+ + ++ E +TPL A
Sbjct: 156 HILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA- 212
Query: 215 IKGRVNII 222
KG + +I
Sbjct: 213 -KGGLGLI 219
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 81 GRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTT 140
G+L ++ + D + + +++ +AL+ AC G ++V+ LL V + + DD +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWS 76
Query: 141 SLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK--MDPDL 198
LH+AASAG EIV LL + + NG TPL +SK EI LL+ +PD
Sbjct: 77 PLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD- 134
Query: 199 SSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKH 258
++D+ T +H A KG + +I IL S+ I+ G T LHL + E K
Sbjct: 135 --AKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 191
Query: 259 LM 260
L+
Sbjct: 192 LV 193
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRT 174
G+L+ +K+ + D T+LH A SAGH EIV LL+ KD G +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWS 76
Query: 175 PLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSE 234
PL + +S G EI + LL +++ N G TPLH+A K R I +L + +
Sbjct: 77 PLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGG-ANPD 134
Query: 235 IRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
+ + T +H + + L+ +T N D +GNT L
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKAST---NIQDTEGNTPL 177
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLE---TPVHEACREGRLHIVRLFLETDS 94
T LH A GH E+ +L+L N+K + +P+H A GR IV+ L +
Sbjct: 43 TALHWACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 95 WVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIV 154
V+ +N+N + L+ A + R ++ LL + D T++H AA+ G+L+++
Sbjct: 99 Q-VNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMI 156
Query: 155 NELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214
+ LL + T +D G TPL L + +E + L+ + ++ E +TPL A
Sbjct: 157 HILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA- 213
Query: 215 IKGRVNII 222
KG + +I
Sbjct: 214 -KGGLGLI 220
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 11/224 (4%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
A +YG E E+++ ++ E + T +H A R+ +V+ ++ + +V ++
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKGA-IVDQLGG 73
Query: 103 NKESA-LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEAR 161
+ S L+ A +G L +V QL+ Y + L +D + +H+AA GH IV L+ A+
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLI-AK 131
Query: 162 PEFTWKKDPNGRTPLTLCSSKGH-LEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVN 220
+ D NG TPL + + H ++ TR LL + ++ T LHWA + G
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 221 IIDEIL--SVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262
+I +L N+++ I+ GE+ L L + + HL E
Sbjct: 192 VISLLLEAGANVDAQNIK---GESALDLAKQRKNVWMINHLQEA 232
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 131 LLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRE 190
+ +DD T + A G E EL+EA + + D T L + +++ +
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKY 60
Query: 191 LLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKN 250
+ + + TPLHWAT +G ++++ +++ + S I G + +HL +
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQF 119
Query: 251 NQYEAVKHLM 260
V +L+
Sbjct: 120 GHTSIVAYLI 129
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ DD +T LH+AA GH EIV LL+ + +D
Sbjct: 21 AARAGQDDEVRILMANGADVN--AHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARD 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229
+G TPL L + GHLEI LLK D+ ++QD G TPLH A +G + I+ E+L +
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIV-EVLLKH 135
Query: 230 LESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+ G+T + + N E + +++ LN
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 39/195 (20%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ ++L E G+ L+ ++ GS T LHLAA GH E+ +LK
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGS--TPLHLAAWIGHPEIVEVLLK--- 68
Query: 61 EMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVV 120
H A R +TD W + L++A + G L++V
Sbjct: 69 --------------HGADVNAR--------DTDGW----------TPLHLAADNGHLEIV 96
Query: 121 KQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCS 180
+ LL Y + + GL T LH+AA GHLEIV LL+ + +D G+T +
Sbjct: 97 EVLLKYGADVNAQDAYGL-TPLHLAADRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISI 154
Query: 181 SKGHLEITRELLKMD 195
G+ ++ L K++
Sbjct: 155 DNGNEDLAEILQKLN 169
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLL-NYPSVSLLEM 134
EA R G+ VR+ + + + + + L++A G L++V+ LL N V+ ++
Sbjct: 8 EAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT 66
Query: 135 DDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
+ TT LH+AAS GHLEIV LL+ + KD G TPL L + GHLEI LLK
Sbjct: 67 NG--TTPLHLAASLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 195 DPDLSSSQDNEGRTPL 210
D+ ++QD G+T
Sbjct: 124 GADV-NAQDKFGKTAF 138
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA+ GHLEIV LL + D NG TPL L +S GHLEI LLK D+
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASLGHLEIVEVLLKYGADV- 94
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEIL 226
+++D G TPL+ A G + I++ +L
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LH+AA GH E+ +E+L + A + TP+H A G L IV + L+ + V
Sbjct: 37 TPLHMAAAVGHLEI-VEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPS 128
K + + LY+A G L++V+ LL + +
Sbjct: 96 AK-DATGITPLYLAAYWGHLEIVEVLLKHGA 125
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 179 CSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTL 238
+ G + R L+ D +++ D+ GRTPLH A G + I++ +L + + + T
Sbjct: 9 AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT- 66
Query: 239 HGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
+G T LHL E V+ L L VN D G T L
Sbjct: 67 NGTTPLHLAASLGHLEIVEVL---LKYGADVNAKDATGITPL 105
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA GH E+ +LK ++ A + TP++ A G L IV + L+ + V
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDATGI-TPLYLAAYWGHLEIVEVLLKHGA-DV 127
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLL-NYPSVSLLEM 134
EA R GR VR+ + + V+ + + L++A G L++V+ LL N V+
Sbjct: 20 EAARAGRDDEVRILMANGA-DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN--AY 76
Query: 135 DDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
D +T LH+AA GHLEIV LL+ + KD NG TPL L +++GHLEI LLK
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 195 DPDLSSSQDNEGRTPL 210
D+ ++QD G+T
Sbjct: 136 GADV-NAQDKFGKTAF 150
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ ++L E G L+ ++ V G T LHLAA +GH E+ +LK
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGA 71
Query: 61 EMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVV 120
++ A + TP+H A G L IV + L+ + V K + N + L++A RG L++V
Sbjct: 72 DV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIV 129
Query: 121 KQLLNYPS 128
+ LL Y +
Sbjct: 130 EVLLKYGA 137
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWV 96
+T LHLAA +GH E+ +LK ++ A + + TP+H A G L IV + L+ +
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI-TPLHLAANRGHLEIVEVLLKYGA-D 138
Query: 97 VHKMNRNKESALYVACERGRLDVVKQL 123
V+ ++ ++A ++ G D+ + L
Sbjct: 139 VNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA G+ + V +L+E + D +GRTPL + +GH EI + L+ D+++ +D+
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNA-KDS 68
Query: 205 EGRTPLHWATIKGRVNIIDEILS----VNLESSEIRTLHGETVLHLGVKNNQYEAVKHLM 260
+GRTPLH+A +G I+ ++S VN + S+ G T LH K E VK L
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD-----GRTPLHYAAKEGHKEIVKLL- 122
Query: 261 ETLNTTKLVNTPDNDGNTIL 280
++ VNT D+DG T L
Sbjct: 123 --ISKGADVNTSDSDGRTPL 140
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA G V+ +E + V+ + + + L+ A + G ++VK L++ + +
Sbjct: 10 EAAENGNKDRVKDLIENGA-DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
DG T LH AA GH EIV +LL ++ KD +GRTPL + +GH EI + L+
Sbjct: 69 DG-RTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 196 PDLSSSQDNEGRTPLHWATIKGRVNII 222
D+++S D++GRTPL A G I+
Sbjct: 127 ADVNTS-DSDGRTPLDLAREHGNEEIV 152
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 77/197 (39%), Gaps = 45/197 (22%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ +RL E G +L++ ++ G T LH AA+ GH+ EI+KL
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHYAAKEGHK----EIVKLLI 57
Query: 61 EMLAATNEK---LETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRL 117
A N K TP+H A +EG IV+L + + V K
Sbjct: 58 SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK------------------ 99
Query: 118 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLT 177
D T LH AA GH EIV +LL ++ D +GRTPL
Sbjct: 100 -----------------DSDGRTPLHYAAKEGHKEIV-KLLISKGADVNTSDSDGRTPLD 141
Query: 178 LCSSKGHLEITRELLKM 194
L G+ EI + L K
Sbjct: 142 LAREHGNEEIVKLLEKQ 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 145 AASAGHLEIVNELLE--ARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQ 202
AA G+ + V +LLE A P + D +GRTPL + GH EI + LL D +++
Sbjct: 11 AAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAK 66
Query: 203 DNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262
D++GRTPLH+A G I+ +LS + + + G T LH +N E VK L
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKLL--- 122
Query: 263 LNTTKLVNTPDNDGNTIL 280
L+ NT D+DG T L
Sbjct: 123 LSKGADPNTSDSDGRTPL 140
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA G V+ LE + + + + + L+ A E G ++VK LL+ + +
Sbjct: 10 EAAENGNKDRVKDLLENGA-DPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
DG T LH AA GH EIV +LL ++ KD +GRTPL + GH EI + LL
Sbjct: 69 DG-RTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 196 PDLSSSQDNEGRTPLHWATIKGRVNII 222
D ++S D++GRTPL A G I+
Sbjct: 127 ADPNTS-DSDGRTPLDLAREHGNEEIV 152
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 65 ATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLL 124
A++ TP+H A G IV+L L + K + + + L+ A E G ++VK LL
Sbjct: 32 ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLL 90
Query: 125 NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLE--ARPEFTWKKDPNGRTPLTLCSSK 182
+ + + DG T LH AA GH EIV LL A P + D +GRTPL L
Sbjct: 91 SKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLSKGADPNTS---DSDGRTPLDLAREH 146
Query: 183 GHLEITRELLKM 194
G+ EI + L K
Sbjct: 147 GNEEIVKLLEKQ 158
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ +RL E G +L++ + G T LH AA GH+ EI+KL
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADPNASDSDGR--TPLHYAAENGHK----EIVKLLL 57
Query: 61 EMLAATNEK---LETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRL 117
A N K TP+H A G IV+L L + K + + + L+ A E G
Sbjct: 58 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHK 116
Query: 118 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEAR 161
++VK LL+ + DG T L +A G+ EIV +LLE +
Sbjct: 117 EIVKLLLSKGADPNTSDSDG-RTPLDLAREHGNEEIV-KLLEKQ 158
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLL-NYPSVSLLEM 134
EA R G+ VR+ + + V+ + ++ L++A G L++V+ LL N V+ L+
Sbjct: 20 EAARAGQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF 78
Query: 135 DDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
+T LH+AA GHLEIV LL+ + D G TPL L + GHLEI LLK
Sbjct: 79 SG--STPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 195 DPDLSSSQDNEGRTPLHWATIKG 217
D+ ++QD G+T + G
Sbjct: 136 GADV-NAQDKFGKTAFDISIDNG 157
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA GHLEIV LL+ + D +G TPL L + +GHLEI LLK D+
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV- 106
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNN 251
++ D G TPLH A G + I++ +L + + + G+T + + N
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA-QDKFGKTAFDISIDNG 157
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A +D G TPL L + GHLEI LLK D+ ++ D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDF 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPLH A +G + I++ +L + + T+ G T LHL E V+ L L
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI-GSTPLHLAADTGHLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNTIL 280
VN D G T
Sbjct: 135 YGADVNAQDKFGKTAF 150
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ ++L E G+ L+ ++ + G +T LHLAAR GH E+ +LK
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKNGA 71
Query: 61 EMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVV 120
++ A + TP+H A + G L IV + L+ + V+ + + L++A + G L++V
Sbjct: 72 DV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGHLEIV 129
Query: 121 KQLLNYPS 128
+ LL Y +
Sbjct: 130 EVLLKYGA 137
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ D+ TT LH+AA +GHLEIV LL+ + D
Sbjct: 21 AARAGQDDEVRILMANGADVN--AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASD 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229
G TPL L + GHLEI LLK D+ ++ D++G TPLH A G + I+ E+L +
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIV-EVLLKH 135
Query: 230 LESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+ G+T + + N E + +++ LN
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V L+ + D G TPL L + GHLEI LLK D+ +S D
Sbjct: 21 AARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DV 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPLH A G + I+ E+L N G T LHL K E V+ L L
Sbjct: 79 FGYTPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNTIL 280
VN D G T
Sbjct: 135 HGADVNAQDKFGKTAF 150
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA GH E+ +LK + + A++ TP+H A G L IV + L+ + V
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA-DV 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPS 128
+ M+ + + L++A + G L++V+ LL + +
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA +GH E+ +LK ++ A ++ + TP+H A + G L IV + L+ + V
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGM-TPLHLAAKWGYLEIVEVLLKHGA-DV 139
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ DD T LH+AA GHLEIV LL+ + D
Sbjct: 21 AARAGQDDEVRILMANGADVN--AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA-AD 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229
G TPL L + GHLEI LLK D++++ D G TPLH A G + I++ +L
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNAT-DTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 230 LESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+ + + G+T + + N E + +++ LN
Sbjct: 137 ADVNA-QDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A +D +G+TPL L + KGHLEI LLK D++++ D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA-DK 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPLH A + G + I+ E+L N +G T LHL E V+ L L
Sbjct: 79 MGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNTIL 280
VN D G T
Sbjct: 135 YGADVNAQDKFGKTAF 150
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWV 96
+T LHLAA YGH E+ +LK ++ AT+ TP+H A G L IV + L+ +
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLKYGAD- 138
Query: 97 VHKMNRNKESALYVACERGRLDVVKQL 123
V+ ++ ++A ++ + G D+ + L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+ + GHLEI+ LL+ + D +G TPL L + +GHLEI LLK D+
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV- 106
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259
++ D +G TPLH A G + I++ +L + + + G+T + + N E + +
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA-QDKFGKTAFDISIDNGN-EDLAEI 164
Query: 260 METLN 264
++ LN
Sbjct: 165 LQKLN 169
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V L+ + D G TPL L + GHLEI LLK D+++S D
Sbjct: 21 AARAGQDDEVRILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS-DK 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPLH A +G + I++ +L + + + G T LHL ++ E V+ L L
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNTIL 280
VN D G T
Sbjct: 135 YGADVNAQDKFGKTAF 150
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G ++ + IL + A + TP+H G L I+ + L+ + V+ ++
Sbjct: 21 AARAGQDD-EVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA-DVNASDK 78
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162
+ + L++A RG L++V+ LL Y + + MD T LH+AA GHLEIV LL+
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGA-DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 163 EFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
+ +D G+T + G+ ++ L K++
Sbjct: 138 DVN-AQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHL GH E+ +LK ++ A+++ TP+H A G L IV + L+ + V
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGA-DV 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPS 128
+ M+ + L++A E G L++V+ LL Y +
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA GH E+ +LK ++ A + + TP+H A +G L IV + L+ + V
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DV 139
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ DD T LH+AA+ G LEIV LL+ + D
Sbjct: 13 AAAAGQDDEVRILMANGADVN--ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASD 69
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEIL 226
G TPL L + GHLEI LLK D+ ++ D G TPLH A + G++ I++ +L
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLL 125
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA+AG + V +L A D NG TPL L ++ G LEI LLK D+++S D+
Sbjct: 13 AAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS-DS 70
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLH--GETVLHLGVKNNQYEAVKHLME 261
G TPLH A G + I++ +L +++ G T LHL + Q E V+ L++
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLK---HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 37/154 (24%)
Query: 65 ATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLL 124
AT++ TP+H A G+L IV + L+ + +N + + +
Sbjct: 34 ATDDNGLTPLHLAAANGQLEIVEVLLKNGA----DVNASDSAGI---------------- 73
Query: 125 NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGH 184
T LH+AA GHLEIV LL+ + D G TPL L + G
Sbjct: 74 ---------------TPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQ 117
Query: 185 LEITRELLKMDPDLSSSQDNEGRTPLHWATIKGR 218
LEI LLK D+ ++QD G T + +G+
Sbjct: 118 LEIVEVLLKHGADV-NAQDALGLTAFDISINQGQ 150
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA GH E+ +LK ++ A + TP+H A G+L IV + L+
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK------ 126
Query: 98 HKMNRNKESAL 108
H + N + AL
Sbjct: 127 HGADVNAQDAL 137
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA G V+ +E + V+ + + + L+ A E G +VVK L++ + +
Sbjct: 10 EAAENGNKDRVKDLIENGA-DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
DG T LH AA GH E+V +LL ++ KD +GRTPL + GH E+ + L+
Sbjct: 69 DG-RTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 196 PDLSSSQDNEGRTPLHWATIKGRVNII 222
D+++S D++GRTPL A G ++
Sbjct: 127 ADVNTS-DSDGRTPLDLAREHGNEEVV 152
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA G+ + V +L+E + D +GRTPL + GH E+ + L+ D+++ +D+
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDS 68
Query: 205 EGRTPLHWATIKGRVNIIDEILS----VNLESSEIRTLHGETVLHLGVKNNQYEAVKHLM 260
+GRTPLH A G ++ ++S VN + S+ G T LH +N E VK L
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD-----GRTPLHHAAENGHKEVVKLL- 122
Query: 261 ETLNTTKLVNTPDNDGNTIL 280
++ VNT D+DG T L
Sbjct: 123 --ISKGADVNTSDSDGRTPL 140
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AA G+++ ++++ ++ A+ ++ TP+H A G +V+L + + V K +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDG-RTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162
+ + L+ A E G +VVK L++ + + DG T LH AA GH E+V +LL ++
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG-RTPLHHAAENGHKEVV-KLLISKG 126
Query: 163 EFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
D +GRTPL L G+ E+ + L K
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA+ GHLEIV LL+ + D G TPL L + GHLEI LLK D++
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259
+ D G TPLH A I G + I+ E+L + + G+T + + N E + +
Sbjct: 108 AV-DTWGDTPLHLAAIMGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAEI 164
Query: 260 METLN 264
++ LN
Sbjct: 165 LQKLN 169
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA R G+ VR+ + + V+ + + + L++A G L++V+ LL + + + +D
Sbjct: 20 EAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA-DVNAID 77
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEF----TWKKDPNGRTPLTLCSSKGHLEITREL 191
+T LH+AA GHLEIV LL+ + TW G TPL L + GHLEI L
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-----GDTPLHLAAIMGHLEIVEVL 132
Query: 192 LKMDPDLSSSQDNEGRTPL 210
LK D+ ++QD G+T
Sbjct: 133 LKHGADV-NAQDKFGKTAF 150
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A D +G TPL L ++ GHLEI LLK D+++ D
Sbjct: 21 AARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPLH A + G + I++ +L + + + T G+T LHL E V+ L L
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNT 278
VN D G T
Sbjct: 135 HGADVNAQDKFGKT 148
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA YGH E+ +LK ++ A + TP+H A G L IV + L+ + V
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-V 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPS 128
+ ++ ++ L++A G L++V+ LL + +
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA R G+ VR+ + + V+ ++ + L++A G L++V+ LL + + + D
Sbjct: 20 EAARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA-DVDAAD 77
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
T LH+AA GHLEIV LL+ + D G TPL L + +GHLEI LLK
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 196 PDLSSSQDNEGRTPLHWATIKG 217
D+ ++QD G+T + G
Sbjct: 137 ADV-NAQDKFGKTAFDISIDNG 157
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ ++L E G+ L+ ++ V + T LHLAA GH E+ +LK
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADV--NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 61 EMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVV 120
++ AA TP+H A G L IV + L+ + V+ + + L++A + G L++V
Sbjct: 72 DVDAADVYGF-TPLHLAAMTGHLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHLEIV 129
Query: 121 KQLLNYPS 128
+ LL Y +
Sbjct: 130 EVLLKYGA 137
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA GH E+ +LK ++ A + TP+H A EG L IV + L+ + V
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD-V 139
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLN 125
+ ++ ++A ++ + G D+ K N
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAKSCRN 167
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 179 CSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEIL--SVNLESSEIR 236
+ G + R L+ D+++ DN G TPLH A + G + I++ +L +++++++
Sbjct: 21 AARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV- 78
Query: 237 TLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
+G T LHL E V+ L L VN D G+T L
Sbjct: 79 --YGFTPLHLAAMTGHLEIVEVL---LKYGADVNAFDMTGSTPL 117
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA+ GHLEIV LL+ + D G TPL L + GHLEI LLK D++
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259
+ D G TPLH A I G + I+ E+L + + G+T + + N E + +
Sbjct: 108 AV-DTWGDTPLHLAAIMGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAEI 164
Query: 260 METLN 264
++ LN
Sbjct: 165 LQKLN 169
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA R G+ VR+ + + V+ + + + L++A G L++V+ LL + + + +D
Sbjct: 20 EAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA-DVNAID 77
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEF----TWKKDPNGRTPLTLCSSKGHLEITREL 191
+T LH+AA GHLEIV LL+ + TW G TPL L + GHLEI L
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-----GDTPLHLAAIMGHLEIVEVL 132
Query: 192 LKMDPDLSSSQDNEGRTPL 210
LK D+ ++QD G+T
Sbjct: 133 LKHGADV-NAQDKFGKTAF 150
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A D +G TPL L ++ GHLEI LLK D+++ D
Sbjct: 21 AARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPLH A + G + I++ +L + + + T G+T LHL E V+ L L
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNT 278
VN D G T
Sbjct: 135 HGADVNAQDKFGKT 148
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA YGH E+ +LK ++ A + TP+H A G L IV + L+ + V
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-V 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPS 128
+ ++ ++ L++A G L++V+ LL + +
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA GHLEIV LL+ + D G TPL L + +GHLE+ LLK D++
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259
++ D+ G TPLH A G + I+ E+L + + G+T + + N E + +
Sbjct: 108 AN-DHNGFTPLHLAANIGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAEI 164
Query: 260 METLN 264
++ LN
Sbjct: 165 LQKLN 169
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A D G TPL L + GHLEI LLK D+ ++ D+
Sbjct: 21 AARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV-NADDS 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLME 261
G TPLH A +G + ++ E+L N +G T LHL E V+ L++
Sbjct: 79 LGVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA +GH E+ +LK ++ A + + TP+H A G L +V + L+ + V
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLEVVEVLLKNGA-DV 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPS 128
+ + N + L++A G L++V+ LL + +
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 18/149 (12%)
Query: 97 VHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNE 156
V+ +++ S L+VA GR D++ LL + + + D LH+A GH ++V
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ-AVPLHLACQQGHFQVVKC 137
Query: 157 LLE--ARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214
LL+ A+P KKD +G TPL S GH E+ LL+ +++S +N+G T LH A
Sbjct: 138 LLDSNAKPN---KKDLSGNTPLIYACSGGHHELVALLLQHGASINAS-NNKGNTALHEAV 193
Query: 215 IKGRVNIIDEILSVNLESSEIRTLHGETV 243
I+ V +++ +L LHG +V
Sbjct: 194 IEKHVFVVELLL-----------LHGASV 211
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 40 LHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHK 99
LH+AA +G +L +LK A N P+H AC++G +V+ L++++ +K
Sbjct: 90 LHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNK 147
Query: 100 MNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELL 158
+ + + L AC G ++V LL + S+ ++ T+LH A H+ +V LL
Sbjct: 148 KDLSGNTPLIYACSGGHHELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ MDD T LH+AA GHLEIV LL+ + +D
Sbjct: 21 ATRAGQDDEVRILMANGADVN--AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARD 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPL 210
GRTPL L ++ GHLEI LL+ D+ ++QD G+T
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAF 117
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEK---LETPVHEACREGRLHIVRLFLETDS 94
T LHLAA+ GH LEI+++ + A N + TP+H A G L IV + LE +
Sbjct: 49 TPLHLAAKRGH----LEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 95 WVVHKMNRNKESALYVACERGRLDVVKQL 123
V+ ++ ++A ++ + G D+ + L
Sbjct: 105 -DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 179 CSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTL 238
+ G + R L+ D+++ D+ G TPLH A +G + I+ E+L + R +
Sbjct: 21 ATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNARDI 78
Query: 239 HGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
G T LHL E V+ L+E VN D G T
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLE---YGADVNAQDKFGKTAF 117
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ MDD T LH+AA GHLEIV LL+ + D
Sbjct: 21 ATRAGQDDEVRILMANGADVN--AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASD 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPL 210
GRTPL L ++ GHLEI LL+ D+ ++QD G+T
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAF 117
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA+ GH E+ +LK + + A++ TP+H A G L IV + LE + V
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGA-DV 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ MDD T LH+AA GHLEIV LL+ + D
Sbjct: 21 ATRAGQDDEVRILMANGADVN--AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASD 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPL 210
GRTPL L ++ GHLEI LL+ D+ ++QD G+T
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAF 117
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA+ GH E+ +LK + + A++ TP+H A G L IV + LE + V
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGA-DV 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 62 MLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVK 121
+A E ++ P+HEA + G L +R L+ V+ +++ +ALY AC G D+V+
Sbjct: 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVE 123
Query: 122 QLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELL 158
L P++ L + + T+LH AA G+ +IV LL
Sbjct: 124 XLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 127 PSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLE 186
PS + E + + LH AA G+L + E L+ R D G T L GH +
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKD 120
Query: 187 ITRELLKMDPDLSSSQDNE-GRTPLHWATIKGRVNIIDEILS 227
I E L P++ +Q N+ G T LH A KG +I+ +L+
Sbjct: 121 IV-EXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 111 ACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD 169
A G+ D V+ L+ N V+ L+ +DGLT LH+AA GHLEIV LL+ + + D
Sbjct: 21 AARAGQDDEVRILMANGADVNALD-EDGLTP-LHLAAQLGHLEIVEVLLKYGADVNAE-D 77
Query: 170 PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKG 217
G TPL L + +GHLEI LLK D+ ++QD G+T + G
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNG 124
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 169 DPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSV 228
D +G TPL L + GHLEI LLK D+ +++DN G TPLH A I+G + I+ E+L
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIV-EVLLK 101
Query: 229 NLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+ + G+T + + N E + +++ LN
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA R G+ VR+ + + V+ ++ + + L++A + G L++V+ LL Y + E +
Sbjct: 20 EAARAGQDDEVRILM-ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN 78
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
G+ T LH+AA GHLEIV LL+ + +D G+T + G+ ++ L K++
Sbjct: 79 FGI-TPLHLAAIRGHLEIVEVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA+ GH E+ +LK ++ A N + TP+H A G L IV + L+ + V
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI-TPLHLAAIRGHLEIVEVLLKHGAD-V 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 78 CREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDG 137
CREG VRL+L+ +++ + + S L+ AC GR VV+ L+ + M+ G
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRG 66
Query: 138 LTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192
T LH+AAS GH +IV +LL+ + + + +G PL G ++ +L+
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWK 167
++ C G V+ L+ L + DD + LH A G +V E+L R
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGARINV 62
Query: 168 KDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILS 227
+ TPL L +S GH +I ++LL+ D+++ ++ G PLH+A G+ + +++++
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQDQVAEDLVA 121
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 20/128 (15%)
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSL 131
+P+H ACREGR +V + + + ++ MNR ++ L++A G D+V++LL Y + +
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA-DI 93
Query: 132 LEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEIT--- 188
+++ LH A G ++ +L+ NG +++C+ G + +
Sbjct: 94 NAVNEHGNVPLHYACFWGQDQVAEDLV-----------ANG-ALVSICNKYGEMPVDKAK 141
Query: 189 ---RELLK 193
RELL+
Sbjct: 142 APLRELLR 149
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 176 LTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEI 235
T C + + L + DL+ D+ G +PLHWA +GR ++ E+L + +
Sbjct: 5 FTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVV-EMLIMRGARINV 62
Query: 236 RTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDN 274
+T LHL + + V+ L++ VN N
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIV 86
+T LHLAA +GH ++ ++L+ + + A NE P+H AC G+ +
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVA 116
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 78 CREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDG 137
CREG VRL+L+ +++ + + S L+ AC GR VV+ L+ + M+ G
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRG 71
Query: 138 LTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192
T LH+AAS GH +IV +LL+ + + + +G PL G ++ +L+
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSL 131
+P+H ACREGR +V + + + ++ MNR ++ L++A G D+V++LL Y + +
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA-DI 98
Query: 132 LEMDDGLTTSLHVAASAGHLEIVNELL 158
+++ LH A G ++ +L+
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWK 167
++ C G V+ L+ L + DD + LH A G +V E+L R
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGARINV 67
Query: 168 KDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILS 227
+ TPL L +S GH +I ++LL+ D+++ ++ G PLH+A G+ + +++++
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQDQVAEDLVA 126
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 176 LTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEI 235
T C + + L + DL+ D+ G +PLHWA +GR ++ E+L + +
Sbjct: 10 FTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVV-EMLIMRGARINV 67
Query: 236 RTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDN 274
+T LHL + + V+ L++ VN N
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIV 86
+T LHLAA +GH ++ ++L+ + + A NE P+H AC G+ +
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVA 121
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 142 LHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL-KM-DPDLS 199
LH A V ELL ++P +KD +GR PL S EIT LL KM + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIR-TLHGETVLHLGVKNNQYEAVKH 258
D+ G TP H A G + ++ + L+ + T G T LHL V +E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 259 LMETLNTTKL 268
L+E + ++
Sbjct: 126 LIENGASVRI 135
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 106 SALYVACERGRLDVVKQLLNYP-SVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEF 164
+ ++AC G L+VVK L + P L ++ + T LH+A E+ L+E
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 165 TWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKG 217
KD + PL +S G L++ L + + QD +G TPL A +G
Sbjct: 134 R-IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 142 LHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL-KMDP-DLS 199
LH A V ELL ++P +KD +GR PL S EIT LL KM+ +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIR-TLHGETVLHLGVKNNQYEAVKH 258
D+ G TP H A G + ++ + L+ + T G T LHL V +E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 259 LMETLNTTKL 268
L+E + ++
Sbjct: 126 LIENGASVRI 135
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 108 LYVACERGRLDVVKQLLNYP-SVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTW 166
++AC G L+VVK L + P L ++ + T LH+A E+ L+E
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR- 134
Query: 167 KKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKG 217
KD + PL +S G L++ L + + QD +G TPL A +G
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 142 LHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL-KM-DPDLS 199
LH A V ELL ++P +KD +GR PL S EIT LL KM + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIR-TLHGETVLHLGVKNNQYEAVKH 258
D+ G TP H A G + ++ + L+ + T G T LHL V +E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 259 LMETLNTTKL 268
L+E + ++
Sbjct: 126 LIENGASVRI 135
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 106 SALYVACERGRLDVVKQLLNYP-SVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEF 164
+ ++AC G L+VVK L + P L ++ + T LH+A E+ L+E
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 165 TWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKG 217
KD + PL +S G L++ L + + QD +G TPL A +G
Sbjct: 134 R-IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A +D +G TPL L + GHLEI LLK D+++ D+
Sbjct: 21 AARAGRDDEV-RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DH 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPL A + G + I+ E+L N + G T LHL E V+ L L
Sbjct: 79 AGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL---LK 134
Query: 265 TTKLVNTPDNDGNTIL 280
VN D G T
Sbjct: 135 NGADVNAQDKFGKTAF 150
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G ++ + IL + A + TP+H A G L IV + L+ + V+ ++
Sbjct: 21 AARAGRDD-EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVNAVDH 78
Query: 103 NKESALYVACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEAR 161
+ L +A G L++V+ LL N V+ +M+ T LH+AA GHLEIV LL+
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG--HTPLHLAAMFGHLEIVEVLLKNG 136
Query: 162 PEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
+ +D G+T + G+ ++ L K++
Sbjct: 137 ADVN-AQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A D G TPL L + HLEI LLK D+ ++ DN
Sbjct: 21 AARAGQDDEV-RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDN 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+G TPLH A + G + I+ E+L + + G+T + + N E + +++ LN
Sbjct: 79 DGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 139 TTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDL 198
T LH+AA HLEIV LL+ + D +G TPL L + GHLEI LLK D+
Sbjct: 48 NTPLHLAADYDHLEIVEVLLKHGADVNAH-DNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 199 SSSQDNEGRTPLHWATIKG 217
++QD G+T + G
Sbjct: 107 -NAQDKFGKTAFDISIDNG 124
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMD 135
EA R G+ VR+ + + V+ +R + L++A + L++V+ LL + + +
Sbjct: 20 EAARAGQDDEVRILM-ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN 78
Query: 136 DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
DG +T LH+AA GHLEIV LL+ + +D G+T + G+ ++ L K+
Sbjct: 79 DG-STPLHLAALFGHLEIVEVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWV 96
NT LHLAA Y H E+ +LK ++ A N+ TP+H A G L IV + L+ +
Sbjct: 48 NTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG-STPLHLAALFGHLEIVEVLLKHGAD- 105
Query: 97 VHKMNRNKESALYVACERGRLDVVKQL 123
V+ ++ ++A ++ + G D+ + L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH A +A + + LL R + +G TPL L + + +L+ D D++
Sbjct: 86 TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 145
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259
++ DN G+T LHWA ++ IL ++ + + + ET L L + YEA K L
Sbjct: 146 AA-DNSGKTALHWAAAVNNTEAVN-ILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 260 METLNTTKLVNTPD 273
++ ++ + D
Sbjct: 204 LDNFANREITDHMD 217
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 152 EIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLH 211
+++++LL E D G T L L + + + LL D ++SQDN GRTPLH
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLH 89
Query: 212 WATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKL-VN 270
A + + +L + R G T L L + A++ ++E L T +N
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR----LAIEGMVEDLITADADIN 145
Query: 271 TPDNDGNTIL 280
DN G T L
Sbjct: 146 AADNSGKTAL 155
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 28 IKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVR 87
+ T+ + T LHLAAR+ + A +L + + N TP+H A + + +
Sbjct: 43 LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTG-RTPLHAAVAADAMGVFQ 101
Query: 88 LFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAAS 147
+ L + ++ + + L +A +V+ L+ + D+ T+LH AA+
Sbjct: 102 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI-TADADINAADNSGKTALHWAAA 160
Query: 148 AGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192
+ E VN LL + D + TPL L + +G E ++ LL
Sbjct: 161 VNNTEAVNILLMHHANRDAQDDKD-ETPLFLAAREGSYEASKALL 204
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 19 NLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEAC 78
+L+ D +I S T LH AA + E A+ IL + A ++K ETP+ A
Sbjct: 136 DLITADADI--NAADNSGKTALHWAAAVNNTE-AVNILLMHHANRDAQDDKDETPLFLAA 192
Query: 79 REGRLHIVRLFLE--TDSWVVHKMNRNKESALYVACERGRLDVVKQL 123
REG + L+ + + M+R VA ER D+V+ L
Sbjct: 193 REGSYEASKALLDNFANREITDHMDRLPRD---VASERLHHDIVRLL 236
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 67 NEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNY 126
N +TP+H A +VRL + + + ++R+ ++A ++ACE ++ LL+
Sbjct: 43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDS 101
Query: 127 PSVSLLEMD----DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSK 182
+ L+++ DGLT +LHVA + E V LLE + +GR+PL
Sbjct: 102 AAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160
Query: 183 GHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGET 242
L + + LL+ ++ ++Q G + LH A+ +G + ++ ++ +SS ++ H +T
Sbjct: 161 NSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDT 218
Query: 243 VL 244
L
Sbjct: 219 PL 220
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 3/189 (1%)
Query: 85 IVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHV 144
++ F+ + + ++ +R E+AL++A R D K+LL + + ++ D+ T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHA 61
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
A SA + LL R + +G TPL L + + +L+ D+++ D+
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV-DD 120
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G++ LHWA V+ +L N + +++ ET L L + YE K L++
Sbjct: 121 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 179
Query: 265 TTKLVNTPD 273
+ + D
Sbjct: 180 NRDITDHMD 188
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 153 IVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHW 212
++++ + + D G T L L + + + LL+ D + QDN GRTPLH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHA 61
Query: 213 ATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL-NTTKLVNT 271
A + +L + R G T L L + A++ ++E L N+ VN
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR----LALEGMLEDLINSHADVNA 117
Query: 272 PDNDGNTIL 280
D+ G + L
Sbjct: 118 VDDLGKSAL 126
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAARY + A +L+ + N TP+H A + ++ L + +
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMG-RTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNEL 157
+ + L +A +++ L+N + +DD ++LH AA+ +++ L
Sbjct: 83 DARMHDGTTPLILAARLALEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 158 LE--ARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192
L+ A + K+ TPL L + +G E + LL
Sbjct: 142 LKNGANKDMQNNKEE---TPLFLAAREGSYETAKVLL 175
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 66 TNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLN 125
T+E+ TP+ A G++ +V L+ + + + +ESAL +AC +G D+VK LL+
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGA-DPQLLGKGRESALSLACSKGYTDIVKMLLD 90
Query: 126 YPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHL 185
V + E D T L A H++ V LLE+ + T + D +G + L + G+
Sbjct: 91 -CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYR 148
Query: 186 EITR 189
+ +
Sbjct: 149 SVQQ 152
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 203 DNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262
D EG TPL WA G++ ++ E L N ++ E+ L L + VK L
Sbjct: 33 DEEGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--- 88
Query: 263 LNTTKLVNTPDNDGNTIL 280
L+ VN D +G T L
Sbjct: 89 LDCGVDVNEYDWNGGTPL 106
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 66 TNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLN 125
T+E+ TP+ A G++ +V L+ + + + +ESAL +AC +G D+VK LL+
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQNGA-DPQLLGKGRESALSLACSKGYTDIVKMLLD 88
Query: 126 YPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHL 185
V + E D T L A H++ V LLE+ + T + D +G + L + G+
Sbjct: 89 -CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYR 146
Query: 186 EITR 189
+ +
Sbjct: 147 SVQQ 150
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 203 DNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262
D EG TPL WA G++ ++ E L N ++ E+ L L + VK L
Sbjct: 31 DEEGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--- 86
Query: 263 LNTTKLVNTPDNDGNTIL 280
L+ VN D +G T L
Sbjct: 87 LDCGVDVNEYDWNGGTPL 104
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 66 TNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLN 125
T+E+ TP+ A G++ +V L+ + + + +ESAL +AC +G D+VK LL+
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEFLLQNGA-DPQLLGKGRESALSLACSKGYTDIVKMLLD 106
Query: 126 YPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHL 185
V + E D T L A H++ V LLE+ + T + D +G + L + G+
Sbjct: 107 -CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYR 164
Query: 186 EITR 189
+ +
Sbjct: 165 SVQQ 168
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 203 DNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262
D EG TPL WA G++ ++ E L N ++ E+ L L + VK L
Sbjct: 49 DEEGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--- 104
Query: 263 LNTTKLVNTPDNDGNTIL 280
L+ VN D +G T L
Sbjct: 105 LDCGVDVNEYDWNGGTPL 122
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 101 NRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEA 160
N + L A + G ++ VK+L SV+ +++ +T LH AA + +V LL+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 161 RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVN 220
+ KD G PL S GH E+ ELL + + D TPLH A KG+
Sbjct: 65 GAD-VHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 221 IIDEIL 226
I +L
Sbjct: 123 ICKLLL 128
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 40 LHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLE 91
LH A YGH E+A ++K + A K TP+HEA +G+ I +L L+
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICKLLLQ 129
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 101 NRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEA 160
N + L A + G ++ VK+L SV+ +++ +T LH AA + +V LL+
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 161 RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVN 220
+ KD G PL S GH E+ ELL + + D TPLH A KG+
Sbjct: 67 GAD-VHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 221 IIDEIL 226
I +L
Sbjct: 125 ICKLLL 130
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 40 LHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLE 91
LH A YGH E+A ++K + A K TP+HEA +G+ I +L L+
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICKLLLQ 131
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 101 NRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEA 160
N + L A + G ++ VK+L SV+ +++ +T LH AA + +V LL+
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 161 RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVN 220
+ KD G PL S GH E+ ELL + + D TPLH A KG+
Sbjct: 69 GAD-VHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 221 IIDEIL 226
I +L
Sbjct: 127 ICKLLL 132
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 40 LHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLE 91
LH A YGH E+A ++K + A K TP+HEA +G+ I +L L+
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICKLLLQ 133
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A KD G TPL L ++ GHLEI LLK D+++ D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DA 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
G TPLH A G + I E+L + + G+T + + N E + +++ LN
Sbjct: 79 IGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDISIGNGN-EDLAEILQKLN 136
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLL-NYPSVSLLEM 134
EA R G+ VR+ + + V K + + LY+A G L++V+ LL N V+ ++
Sbjct: 20 EAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA 78
Query: 135 DDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
T LH+AA GHLEI LL+ + +D G+T + G+ ++ L K+
Sbjct: 79 IG--FTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKL 135
Query: 195 D 195
+
Sbjct: 136 N 136
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA GHLEIV LL+ + + GRTPL L + HLEI LLK D+
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGADV- 106
Query: 200 SSQDNEGRTPL 210
++QD G+T
Sbjct: 107 NAQDKFGKTAF 117
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA AG + V +L A D G TPL L + GHLEI LLK D++++ N
Sbjct: 21 AARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-N 78
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKN 250
GRTPLH A + I+ E+L + + G+T + + N
Sbjct: 79 TGRTPLHLAAWADHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDN 123
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA GH E+ +LK ++ A N TP+H A L IV + L+ + V
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTG-RTPLHLAAWADHLEIVEVLLKHGA-DV 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 3/177 (1%)
Query: 85 IVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHV 144
++ F+ + + ++ +R E+AL++A R D K+LL + + ++ D+ T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 64
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
A SA + L+ R + +G TPL L + + +L+ D+++ D+
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DD 123
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLME 261
G++ LHWA V+ +L N + +++ ET L L + YE K L++
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 153 IVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHW 212
++++ + + D G T L L + + + LL+ D ++ QDN GRTPLH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH- 63
Query: 213 ATIKGRVNIIDEILSVNLESS-EIRTLHGETVLHLGVKNNQYEAVKHLMETL-NTTKLVN 270
A + + +IL N + + R G T L L + AV+ ++E L N+ VN
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVN 119
Query: 271 TPDNDGNTIL 280
D+ G + L
Sbjct: 120 AVDDLGKSAL 129
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T LH+AA HLEIV LL+ + D G TPL L + GHLEI LLK D+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLKHGADV- 106
Query: 200 SSQDNEGRTPLHWATIKG 217
++QD G+T + G
Sbjct: 107 NAQDKFGKTAFDISIDNG 124
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAA H E+ +LK + + A + ETP+H G L IV + L+ + V
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGAD-VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD-V 106
Query: 98 HKMNRNKESALYVACERGRLDVVKQL 123
+ ++ ++A ++ + G D+ + L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 171 NGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230
+G TPL + GH E ++LL D+ +++ +G TPLH A G I+ +L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 231 ESSEIRTLHGETVLHLGVKNNQYEAVK 257
+ + R+ G T HL KN +E VK
Sbjct: 67 DVN-ARSKDGNTPEHLAKKNGHHEIVK 92
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 139 TTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDL 198
T LH AA GH E V +LL + + +G TPL L + GH EI + LL D+
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 199 SSSQDNEGRTPLHWATIKGRVNII 222
+++ +G TP H A G I+
Sbjct: 69 -NARSKDGNTPEHLAKKNGHHEIV 91
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWK 167
L+ A + G + VK+LL+ + DG T LH+AA GH EIV +LL A+
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDG-NTPLHLAAKNGHAEIV-KLLLAKGADVNA 70
Query: 168 KDPNGRTPLTLCSSKGHLEITRELLKMDPDLSS 200
+ +G TP L GH EI + L D+++
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
+G TPLH A G + ++LS + + R+ G T LHL KN E VK L L
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLL---LA 63
Query: 265 TTKLVNTPDNDGNT 278
VN DGNT
Sbjct: 64 KGADVNARSKDGNT 77
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 5 LFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLA 64
L G L+ K ++ ++ G NT LHLAA+ GH E+ +L ++ A
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 65 ATNEKLETPVHEACREGRLHIVRLF 89
+ + TP H A + G IV+L
Sbjct: 71 RSKDG-NTPEHLAKKNGHHEIVKLL 94
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNY 126
TP+HEAC G L +V L L+ + +V+ +S L+ A + G +D+VK LL+Y
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 140 TSLHVAASAGHLEIVNELLE--ARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPD 197
T LH+A+ G + V LL+ + P KD G TPL + GHL++ ELL
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVV-ELLLQHKA 67
Query: 198 LSSSQDNEGRTPLHWATIKGRVNIIDEILS 227
L ++ + +PLH A G V+I+ +LS
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 10 LKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEK 69
+KG+ P+ L+Q + + G T LH A +GH ++ +E+L ++ T +
Sbjct: 19 IKGDIPSVEYLLQNGSDPNVKDHAGW--TPLHEACNHGHLKV-VELLLQHKALVNTTGYQ 75
Query: 70 LETPVHEACREGRLHIVRLFL 90
++P+H+A + G + IV+L L
Sbjct: 76 NDSPLHDAAKNGHVDIVKLLL 96
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 101 NRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEA 160
N E+ L++A +G + V+ LL S ++ D T LH A + GHL++V LL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 161 RPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192
+ N +PL + GH++I + LL
Sbjct: 66 KALVNTTGYQN-DSPLHDAAKNGHVDIVKLLL 96
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 139 TTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDL 198
T+ LH+AA GH LL A + + RTPL + +S+GH I LLK D+
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGADV 93
Query: 199 SSSQDNEGRTPLHWAT 214
+++D T LHWAT
Sbjct: 94 -NAKDMLKMTALHWAT 108
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK--MDPDLSSSQ 202
AA AG + V L+ FT D G +PL L + GH T LL+ + D +
Sbjct: 9 AARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 203 DNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLME 261
D RTPLH A +G NI+ E+L + + + T LH ++N E V+ L++
Sbjct: 67 D---RTPLHMAASEGHANIV-EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 40 LHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHK 99
LHLAA+YGH +L+ A T TP+H A EG +IV + L+ + V K
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 100 MNRNKESALYVACERGRLDVVKQLLNYPS 128
+ K +AL+ A E +VV+ L+ Y +
Sbjct: 97 -DMLKMTALHWATEHNHQEVVELLIKYGA 124
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPE 163
K+ L A G + + LL +V+ D +T LH+AA + IV LL+ +
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 164 FTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIID 223
KD G PL S GH E+T LLK + ++ D TPLH A K RV +
Sbjct: 84 -VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCS 141
Query: 224 EILSVNLESSEIRTLHGETVLHLG 247
+LS + + + HG++ + +
Sbjct: 142 LLLSHGADPTLVNC-HGKSAVDMA 164
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G+EE + +L A++ + TP+H A R+ IV+L L+ + VH ++
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDK 89
Query: 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELL 158
L+ AC G +V + LL + + MD T LH AAS +E+ + LL
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 26/230 (11%)
Query: 40 LHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLE--TDSWVV 97
LH A YGH E+ E+L + A + TP+HEA + R+ + L L D +V
Sbjct: 95 LHNACSYGHYEVT-ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 98 HKMNRN------------------KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLT 139
+ ++ K +L A L VK+ L ++ +
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHE 212
Query: 140 TSLHVAASAGH--LEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPD 197
T+LH A ++ H + V ELL + +K+ + TPL + + + H ++ L K
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 198 LSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLG 247
+ ++ D+ G+T LH A + G + +LS + S I +L G T +G
Sbjct: 273 M-NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS-IISLQGFTAAQMG 320
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 7/175 (4%)
Query: 95 WVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDG-----LTTSLHVAASAG 149
+VV+ + N +AL+ + VV+QLL+ + + + + T+L +
Sbjct: 102 YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQD 161
Query: 150 HLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTP 209
+E V +L K G+T L L S G +++ + LL + D++ QD++G T
Sbjct: 162 DIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV-QDDDGSTA 219
Query: 210 LHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264
L A G I +L+V + G T L + + Q E L +N
Sbjct: 220 LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 50 ELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALY 109
E L++ +L + A ++ +T + A GR+ +V+ L ++ V + + + +AL
Sbjct: 164 ETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALM 221
Query: 110 VACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNEL 157
ACE G ++ LL PS + D +T+L VA AG EI + L
Sbjct: 222 CACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 117 LDVVKQLLNYPSVSLLEMDDGLT-TSLHVAASAGHLEIVNELLEAR--PEFTWKKDPNGR 173
++V++Q+ ++ L + L T LH+A EI LL A PE +D G
Sbjct: 22 MEVIRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGN 76
Query: 174 TPLTLCSSKGHLEITRELLK--MDPDLSS---SQDNEGRTPLHWATIKGRVNIIDEILSV 228
TPL L +G L L + P L S + + G T LH A+I G + I++ ++S+
Sbjct: 77 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 136
Query: 229 NLESSEIRTLHGETVLHLGV 248
+ + +G T LHL V
Sbjct: 137 GADVNAQEPCNGRTALHLAV 156
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 185 LEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVL 244
+E+ R++ K D + Q+N +TPLH A I + I + +L + E+R G T L
Sbjct: 22 MEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL 79
Query: 245 HLGVKNNQYEAVKHLMETLNTTKL---VNTPDNDGNTIL 280
HL + +V L ++ T L + + +G+T L
Sbjct: 80 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 38 TVLHLAARYGHEELALEILKL-C-PEMLAATNEKLETPVHEACREGRLHIVRLFLETDSW 95
T LHLA E+A +L C PE+ + + TP+H AC +G L V + ++ +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTT 100
Query: 96 -----VVHKMNRNKESALYVACERGRLDVVKQLLNYPS-VSLLEMDDGLTTSLHVAASAG 149
++ N N + L++A G L +V+ L++ + V+ E +G T+LH+A
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG-RTALHLAVDLQ 159
Query: 150 HLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
+ ++V+ LL+ + + G +P L + I ++L ++
Sbjct: 160 NPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQQLGQL 203
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWV 96
NT L++A E+A ++ + + N ++P A +GR I+ L+ +
Sbjct: 40 NTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 97 VHKMNRNKESALYVACERGRLDVVKQLLNYPSVSL-LEMDDGLTTSLH-VAASAG---HL 151
++K NR +AL A E+G +D VK LL + + D G T + V G +
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 152 EIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195
+IV L+E + + KD +GRT + + KG+ EI++ L + +
Sbjct: 159 DIVKLLMENGADQSI-KDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 9/174 (5%)
Query: 54 EILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACE 113
EIL+ + + + TP++ A + I + ++ + + + N +S A
Sbjct: 23 EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGA 81
Query: 114 RGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLE-ARPEFTWKKDPNG 172
+GR +++ +L + + L + + +L AA GH++ V LLE R + ++ D G
Sbjct: 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF-G 140
Query: 173 RTPLTLC-----SSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNI 221
T L ++ + +I + L++ D S +DN GRT + +A KG I
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEI 193
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 11/167 (6%)
Query: 120 VKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLC 179
VK++L + + E+D T L++A +EI L++ + + + +P
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS-DSPYLYA 79
Query: 180 SSKGHLEITRELLK-MDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTL 238
++G EI +LK PDL + + G L A KG ++ + +L E + +
Sbjct: 80 GAQGRTEILAYMLKHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138
Query: 239 HGETVL--HLGVK--NNQYE-AVKHLMETLNTTKLVNTPDNDGNTIL 280
G T L +G++ N Y+ VK LME + DN G T +
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI---KDNSGRTAM 182
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN 204
AA+ + V E+L+ + D G TPL + +EI + L+ D+ + Q++
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNS 70
Query: 205 EGRTPLHWATIKGRVNIIDEIL 226
+P +A +GR I+ +L
Sbjct: 71 ISDSPYLYAGAQGRTEILAYML 92
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 117 LDVVKQLLNYPSVSLLEMDDGLT-TSLHVAASAGHLEIVNELLEA--RPEFTWKKDPNGR 173
++V++Q+ ++ L + L T LH+A EI LL A PE +D G
Sbjct: 25 MEVIRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGN 79
Query: 174 TPLTLCSSKGHLEITRELLK--MDPDLSS---SQDNEGRTPLHWATIKGRVNIIDEILSV 228
TPL L +G L L + P L S + + G T LH A+I G + I++ ++S+
Sbjct: 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 139
Query: 229 NLESSEIRTLHGETVLHLGV 248
+ + +G T LHL V
Sbjct: 140 GADVNAQEPCNGRTALHLAV 159
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 185 LEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVL 244
+E+ R++ K D + Q+N +TPLH A I + I + +L + E+R G T L
Sbjct: 25 MEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL 82
Query: 245 HLGVKNNQYEAVKHLMETLNTTKL---VNTPDNDGNTIL 280
HL + +V L ++ T L + + +G+T L
Sbjct: 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 33/188 (17%)
Query: 29 KQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEK---LETPVHEACREGRLHI 85
KQ + ++ LHLA + + L +E+++ LA N + +TP+H A + I
Sbjct: 1 KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60
Query: 86 VRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVA 145
L + R + L++ACE+G L V G+ T +
Sbjct: 61 AEALLGAGCDPELRDFRGN-TPLHLACEQGCLASV----------------GVLTQ---S 100
Query: 146 ASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNE 205
+ HL + +L+A + NG T L L S G+L I L+ + D+++ +
Sbjct: 101 CTTPHL---HSILKA-------TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 150
Query: 206 GRTPLHWA 213
GRT LH A
Sbjct: 151 GRTALHLA 158
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 37 NTVLHLAARYGHEELALEILKL-C-PEMLAATNEKLETPVHEACREGRLHIVRLFLETDS 94
T LHLA E+A +L C PE+ + + TP+H AC +G L V + ++ +
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCT 102
Query: 95 W-----VVHKMNRNKESALYVACERGRLDVVKQLLNYPS-VSLLEMDDGLTTSLHVAASA 148
++ N N + L++A G L +V+ L++ + V+ E +G T+LH+A
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG-RTALHLAVDL 161
Query: 149 GHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194
+ ++V+ LL+ + + G +P L + I ++L ++
Sbjct: 162 QNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 74 VHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNY---PSVS 130
+H+ +G L ++ L +V+K + + L A G ++ V+ LL + P +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 131 LLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRE 190
E + ++L +A++ G+ +IV LLE + D NG TPL H++
Sbjct: 66 AKERE----SALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 191 LLKMDPDLSSSQDNEGRTPLHWATIKG 217
LL DL++ D+ G TP+ A G
Sbjct: 121 LLARGADLTTEADS-GYTPMDLAVALG 146
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 137 GLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM-- 194
G + S+H A+ G L+ + E L K D G TPL S+ G +E R LL+
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 195 DPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYE 254
DP + + E + L A+ G +I+ +L +++ + I +G T L V+ N +
Sbjct: 61 DPHILA---KERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVK 116
Query: 255 AVKHLM 260
V+ L+
Sbjct: 117 CVEALL 122
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 74 VHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNY---PSVS 130
+H+ +G L ++ L +V+K + + L A G ++ V+ LL + P +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 131 LLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRE 190
E + ++L +A++ G+ +IV LLE + D NG TPL H++
Sbjct: 66 AKERE----SALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 191 LLKMDPDLSSSQDNEGRTPLHWATIKG 217
LL DL++ D+ G TP+ A G
Sbjct: 121 LLARGADLTTEADS-GYTPMDLAVALG 146
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 137 GLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM-- 194
G + S+H A+ G L+ + E L K D G TPL S+ G +E R LL+
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 195 DPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYE 254
DP + + E + L A+ G +I+ +L +++ + I +G T L V N +
Sbjct: 61 DPHILA---KERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVHGNHVK 116
Query: 255 AVKHLM 260
V+ L+
Sbjct: 117 CVEALL 122
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T L VA G +++L+E + KD G T L L I +LL +++
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259
+ +D G+TPL W+ I G + +L ++ R L GET L + K + E VK L
Sbjct: 96 T-KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKL 153
Query: 260 ME 261
+E
Sbjct: 154 LE 155
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 4/151 (2%)
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSL 131
TP+ AC G + + +E + K + +AL A + RL + ++LL+ S ++
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGS-NV 94
Query: 132 LEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITREL 191
D T L + G+ E+ LLE ++ G TPL + S G EI ++L
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKL 153
Query: 192 LKMDPDLSSSQDNEGRTPLHWATIKGRVNII 222
L++ D+ S++D G T A I GR +I
Sbjct: 154 LELGADI-SARDLTGLTAEASARIFGRQEVI 183
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 198 LSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVK 257
L + +D+ RTPL A + G N ID+++ N + E + + G T L VKNN+ +
Sbjct: 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDKDIEGSTALIWAVKNNRLGIAE 85
Query: 258 HLMETLNTTKLVNTPDNDGNTIL 280
L L+ VNT D G T L
Sbjct: 86 KL---LSKGSNVNTKDFSGKTPL 105
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 108 LYVACERGRLDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTW 166
L VAC G + + +L+ N+ L + D +T+L A L I +LL
Sbjct: 39 LMVACMLGMENAIDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN- 95
Query: 167 KKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEIL 226
KD +G+TPL G+ E++ LL+ +++ ++ EG TPL A+ GR I+ ++L
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLL 154
Query: 227 SVNLESSEIRTLHGETV 243
+ + S R L G T
Sbjct: 155 ELGADISA-RDLTGLTA 170
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 134 MDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193
M L L AA AG + V +L A KD NG TPL L + GHLE+ + LL+
Sbjct: 20 MGSDLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 194 MDPDLSSSQDNEGRTPLHWATIKG 217
D+ +QD G+T + G
Sbjct: 79 AGADV-XAQDKFGKTAFDISIDNG 101
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G ++ + IL +AA ++ TP+H A R G L +V+L LE + V + ++
Sbjct: 31 AARAGQDD-EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DK 88
Query: 103 NKESALYVACERGRLDVVKQL 123
++A ++ + G D+ + L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 1 MDERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP 60
+ ++L E G+ L+ ++ + GS T LHLAAR GH LE++KL
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS--TPLHLAARNGH----LEVVKLLL 77
Query: 61 EMLA 64
E A
Sbjct: 78 EAGA 81
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 70 LETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSV 129
L +P+HEA R G + V + + HK++ + + LY+ACE + VK+LL S
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLE--SG 157
Query: 130 SLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTL 178
+ + G + LH A E+ L++ + T K+ G+ P+ L
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVEL 205
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 35/171 (20%)
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLL------- 124
+P+HEA G +R + + W V+ + + S L+ AC G L VK LL
Sbjct: 5 SPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 125 -----------------NYPSVSLL-------EMDDGLTTSLHVAASAGHLEIVNELLEA 160
++ V+LL + + L + +H AA GH+E VN L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 123
Query: 161 RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLH 211
K G TPL L ++LL+ D++ + + +PLH
Sbjct: 124 GGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQD--SPLH 171
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 13/182 (7%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWK 167
L A + +D+V+QLL + + ++G T LH A +IV LL + +
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 168 KDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEIL- 226
K NG TP L + G +++ + L D++ D G T A + G+V + +
Sbjct: 89 K-KNGATPFILAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 227 ---SVNL-----ESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNT 278
+VNL E E G T L + E +K L++ + VN DN G
Sbjct: 147 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD--VNACDNMGRN 204
Query: 279 IL 280
L
Sbjct: 205 AL 206
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 99 KMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDD-GLTTSLHVAASA--GHLEIVN 155
++ + +AL A E+G ++V+K LL+ + D+ G +H S+ +E +
Sbjct: 163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 222
Query: 156 ELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPL 210
LL + G+TPL L K HL + + LL+ + + D++G+T L
Sbjct: 223 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 13/182 (7%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWK 167
L A + +D+V+QLL + + ++G T LH A +IV LL + +
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 168 KDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEIL- 226
K NG TP L + G +++ + L D++ D G T A + G+V + +
Sbjct: 69 K-KNGATPFLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 227 ---SVNL-----ESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNT 278
+VNL E E G T L + E +K L++ + VN DN G
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD--VNACDNMGRN 184
Query: 279 IL 280
L
Sbjct: 185 AL 186
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 99 KMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDD-GLTTSLHVAASA--GHLEIVN 155
++ + +AL A E+G ++V+K LL+ + D+ G +H S+ +E +
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202
Query: 156 ELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214
LL + G+TPL L K HL + + LL+ + + D++G+T L A
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 134 MDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193
M L L AA AG + V +L A KD NG TPL L + GHLE+ + LL+
Sbjct: 2 MGSDLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 194 MDPDLSSSQDNEGRT 208
D+ ++QD G+T
Sbjct: 61 AGADV-NAQDKFGKT 74
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G ++ + IL +AA ++ TP+H A R G L +V+L LE + V+ ++
Sbjct: 13 AARAGQDD-EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA-DVNAQDK 70
Query: 103 NKESALYVACERGRLDVVKQL 123
++A ++ + G D+ + L
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 136 DGLTTSLHVAASAGHLE------------IVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183
DG T + + S G LE ++++ + + D G T L L ++
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESS-EIRTLHGET 242
+ + LL+ D ++ QDN GRTPLH A + + +IL N + + R G T
Sbjct: 69 RSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 243 VLHLGVKNNQYEAVKHLMETL-NTTKLVNTPDNDGNTIL 280
L L + AV+ ++E L N+ VN D+ G + L
Sbjct: 127 PLILAAR----LAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 139 TTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDL 198
T+LH+AA+ + LLEA + + D GRTPL S + + L++
Sbjct: 58 ATALHLAAAYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 199 SSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLH 245
++ ++G TPL A +++++++ + + + + L G++ LH
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALH 162
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 113 ERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNG 172
ER L +Q LN ++ + T+LHVAA+ G+ E++ L++AR + KD +G
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDG 232
Query: 173 RTPLTLCSSKGHLEITRELLK 193
TPL + G E R L++
Sbjct: 233 WTPLHAAAHWGKEEACRILVE 253
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 134 MDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193
DDG A S+G E V LLE + + + +G T L ++++ + L++
Sbjct: 38 FDDGAV--FLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVE 94
Query: 194 MDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILS 227
+++ DNEG PLH A G ++I + ++S
Sbjct: 95 NGANINQP-DNEGWIPLHAAASCGYLDIAEYLIS 127
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 70 LETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSV 129
L +P+HEA R G + V + + HK++ + + LY+ACE + VK+LL S
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLE--SG 213
Query: 130 SLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTL 178
+ + G + LH E+ L++ + T K+ G+ P+ L
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVEL 261
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 15/204 (7%)
Query: 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSL 131
+P+HEA G +R + + W V+ + + S L+ AC G L VK LL + +
Sbjct: 61 SPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA--- 116
Query: 132 LEMDDGLTTSLHV----AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEI 187
+G+T H A +G + VN LL+ + D +P+ + +GH+E
Sbjct: 117 --QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVEC 172
Query: 188 TRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLG 247
L+ ++ + G TPL+ A + + ++L + ++ + ++ LH
Sbjct: 173 VNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQ--DSPLHAV 229
Query: 248 VKNNQYEAVKHLMETLNTTKLVNT 271
V+ E LM+ T+ N
Sbjct: 230 VRTASEELACLLMDFGADTQAKNA 253
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 136 DGLTTSLHVAASAGHLE------------IVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183
DG T + + S G LE ++++ + + D G T L L +
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESS-EIRTLHGET 242
+ + LL+ D ++ QDN GRTPLH A + + +IL N + + R G T
Sbjct: 69 RSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 243 VLHLGVKNNQYEAVKHLMETL-NTTKLVNTPDNDGNTIL 280
L L + AV+ ++E L N+ VN D+ G + L
Sbjct: 127 PLILAAR----LAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T+LH+AA + LLEA + + D GRTPL S + + L++
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLH 245
++ ++G TPL A +++++++ + + + + L G++ LH
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALH 162
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAARY + A +L+ + N TP+H A + ++ + + +
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMG-RTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNEL 157
+ + L +A +++ L+N + +DD ++LH AA+ +++ L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 158 LEARPEFTWKKDPNGR--TPLTLCSSKGHLEITRELL 192
L+ K N R TPL L + +G E + LL
Sbjct: 177 LK---NGANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 136 DGLTTSLHVAASAGHLE------------IVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183
DG T + + S G LE ++++ + + D G T L L +
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESS-EIRTLHGET 242
+ + LL+ D ++ QDN GRTPLH A + + +IL N + + R G T
Sbjct: 70 RSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDARMHDGTT 127
Query: 243 VLHLGVKNNQYEAVKHLMETL-NTTKLVNTPDNDGNTIL 280
L L + AV+ ++E L N+ VN D+ G + L
Sbjct: 128 PLILAAR----LAVEGMLEDLINSHADVNAVDDLGKSAL 162
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T+LH+AA + LLEA + + D GRTPL S + + L++
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLH 245
++ ++G TPL A +++++++ + + + + L G++ LH
Sbjct: 119 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALH 163
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
T LHLAARY + A +L+ + N TP+H A + ++ + + +
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMG-RTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 98 HKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNEL 157
+ + L +A +++ L+N + +DD ++LH AA+ +++ L
Sbjct: 119 DARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 158 LEARPEFTWKKDPNGR--TPLTLCSSKGHLEITRELL 192
L+ K N R TPL L + +G E + LL
Sbjct: 178 LK---NGANKDMQNNREETPLFLAAREGSYETAKVLL 211
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 138 LTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPD 197
L L AA AG + V L+ + KD +G TPL L + +GHLEI LLK D
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 198 LSSSQDNEGRT 208
+ ++QD G+T
Sbjct: 61 V-NAQDKFGKT 70
Score = 32.0 bits (71), Expect = 0.40, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193
T LH+AA GHLEIV LL+A + +D G+T + G+ ++ L K
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 43 AARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102
AAR G ++ + IL + A ++ TP+H A REG L IV + L+ + V+ ++
Sbjct: 9 AARAGQDD-EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDK 66
Query: 103 NKESALYVACERGRLDVVKQL 123
++A ++ + G D+ + L
Sbjct: 67 FGKTAFDISIDNGNEDLAEIL 87
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 97 VHKMNRNKESALY-VACERGRLDVVKQLLNYPSVSLLEMDDGLT---------TSLHVAA 146
+ +++RN +AL VA GR V L + ++ D T+LH AA
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 147 SAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEG 206
+ IV L+ + K+D +G+TP+ L + +G +E+ L++ + + D
Sbjct: 288 QVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV-DATD 346
Query: 207 RTPLHWATIKGRVNIID 223
T A NI+D
Sbjct: 347 HTARQLAQANNHHNIVD 363
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 169 DPNGRTPLTLCS-SKGHLEITRELL------KMDPDLSSSQDNE---GRTPLHWATIKGR 218
D NG T L + + ++G ++ L K+D D ++ +D+E GRT LH+A
Sbjct: 232 DRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 219 VNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPD 273
I+ ++ + + + G+T + L + + E V +L++ + + V+ D
Sbjct: 292 XPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 105 ESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEF 164
ES L +A + + + +LL + + + T+LH+AA +LE L+EA PE
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 165 TWKKDPN----GRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNE------------GRT 208
++ + G+T L + ++ + R LL +S+ G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 209 PLHWATIKGRVNIIDEILSVNLE-SSEIRTLH--GETVLHL 246
PL +A G +EI+ + +E ++IR G TVLH+
Sbjct: 124 PLSFAACVGS----EEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 71 ETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLN-YPSV 129
E+P+ A +E + + L+ + VH+ E+AL++A L+ L+ P +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 130 SLLEMDDGL---TTSLHVAASAGHLEIVNELLEARPEFTWKKDPN------------GRT 174
M L T+LH+A ++ +V LL + + + G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 175 PLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLH 211
PL+ + G EI R L++ D+ +QD+ G T LH
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLH 159
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRT 174
G D+V++++ L D+G+T +LH A AGH EIV L++ D +G T
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGIT-ALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWT 105
Query: 175 PLTLCSSKGHLEITRELLK 193
PL +S ++++ + L++
Sbjct: 106 PLHCAASCNNVQVCKFLVE 124
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 80 EGRLHIV-RLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGL 138
EG +V R+ E D + N +AL+ A G ++VK L+ + V++ D
Sbjct: 47 EGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDG 103
Query: 139 TTSLHVAASAGHLEIVNELLEA 160
T LH AAS ++++ L+E+
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRT 174
G D+V++++ L D+G+T +LH A AGH EIV L++ D +G T
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGIT-ALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWT 105
Query: 175 PLTLCSSKGHLEITRELLK 193
PL +S ++++ + L++
Sbjct: 106 PLHCAASCNNVQVCKFLVE 124
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 80 EGRLHIV-RLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGL 138
EG +V R+ E D + N +AL+ A G ++VK L+ + V++ D
Sbjct: 47 EGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDG 103
Query: 139 TTSLHVAASAGHLEIVNELLEA 160
T LH AAS ++++ L+E+
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES 125
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 84/225 (37%), Gaps = 22/225 (9%)
Query: 37 NTVLHLAARYGHEELALEILKLCP--EMLAATNEKLETPVHEACREGRLHIVRLFLETDS 94
+T LHLA + HE +L E L N+ +T +H A G V +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 95 WVVHKMNRNKESALYVACE-RGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEI 153
V+ R +AL++AC R L PS D LT S H
Sbjct: 70 GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 154 VNELLEARPEFTWKKDP--------------NGRTPLTLCSSKGHLEITRELLKMDPDLS 199
++++P +++P +G TPL + E+ R L DL+
Sbjct: 129 A---VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVL 244
+ GRTPLH A ++++ +L + + R G T L
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPL 229
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 84/225 (37%), Gaps = 22/225 (9%)
Query: 37 NTVLHLAARYGHEELALEILKLCP--EMLAATNEKLETPVHEACREGRLHIVRLFLETDS 94
+T LHLA + HE +L E L N+ +T +H A G V +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 95 WVVHKMNRNKESALYVACE-RGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEI 153
V+ R +AL++AC R L PS D LT S H
Sbjct: 70 GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 154 VNELLEARPEFTWKKDP--------------NGRTPLTLCSSKGHLEITRELLKMDPDLS 199
++++P +++P +G TPL + E+ R L DL+
Sbjct: 129 A---VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVL 244
+ GRTPLH A ++++ +L + + R G T L
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPL 229
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELL--EARPEFT 165
L A RG L+ + LL + G T+L V G+ EI LL A P+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVM-KLGNPEIARRLLLRGANPDL- 65
Query: 166 WKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEI 225
KD G + + G L+ + LL+ D++ +DNEG PLH A +G + +++ +
Sbjct: 66 --KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 226 LSVNLESSEIRTLHGETVLHL 246
+ + R G+T L
Sbjct: 123 VKHTASNVGHRNHKGDTACDL 143
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWV 96
N V+H AAR G + +L+ ++ NE P+H A +EG L +V ++ +
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 97 VHKMNRNKESALYVACERGRLDVV 120
V N ++A +A GR +VV
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVV 153
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELL--EARPEFT 165
L A RG L+ + LL + G T+L V G+ EI LL A P+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVM-KLGNPEIARRLLLRGANPDL- 65
Query: 166 WKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEI 225
KD G + + G L+ + LL+ D++ +DNEG PLH A +G + +++ +
Sbjct: 66 --KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 226 LSVNLESSEIRTLHGETVLHL 246
+ + R G+T L
Sbjct: 123 VKHTASNVGHRNHKGDTACDL 143
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
V+H AAR G + +L+ ++ NE P+H A +EG L +V ++ + V
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 98 HKMNRNKESALYVACERGRLDVV 120
N ++A +A GR +VV
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVV 153
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELL--EARPEFT 165
L A RG L+ + LL + G T+L V G+ EI LL A P+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVM-KLGNPEIARRLLLRGANPDL- 65
Query: 166 WKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEI 225
KD G + + G L+ + LL+ D++ +DNEG PLH A +G + +++ +
Sbjct: 66 --KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 226 LSVNLESSEIRTLHGETVLHL 246
+ + R G+T L
Sbjct: 123 VKHTASNVGHRNHKGDTACDL 143
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
V+H AAR G + +L+ ++ NE P+H A +EG L +V ++ + V
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 98 HKMNRNKESALYVACERGRLDVV 120
N ++A +A GR +VV
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVV 153
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELL--EARPEFT 165
L A RG L+ + LL + G T+L V G+ EI LL A P+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVM-KLGNPEIARRLLLRGANPDL- 65
Query: 166 WKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEI 225
KD G + + G L+ + LL+ D++ +DNEG PLH A +G + +++ +
Sbjct: 66 --KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 226 LSVNLESSEIRTLHGETVLHL 246
+ + R G+T L
Sbjct: 123 VKHTASNVGHRNHKGDTACDL 143
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
V+H AAR G + +L+ ++ NE P+H A +EG L +V ++ + V
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 98 HKMNRNKESALYVACERGRLDVV 120
N ++A +A GR +VV
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVV 153
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 108 LYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELL--EARPEFT 165
L A RG L+ + LL + G T+L V G+ EI LL A P+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVM-KLGNPEIARRLLLRGANPDL- 65
Query: 166 WKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEI 225
KD G + + G L+ + LL+ D++ +DNEG PLH A +G + +++ +
Sbjct: 66 --KDRTGFAVIHDAARAGFLDTLQTLLENQADVNI-EDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 226 LSVNLESSEIRTLHGETVLHL 246
+ + R G+T L
Sbjct: 123 VKHTASNVGHRNHKGDTACDL 143
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97
V+H AAR G + +L+ ++ NE P+H A +EG L +V ++ + V
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 98 HKMNRNKESALYVACERGRLDVV 120
N ++A +A GR +VV
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVV 153
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 74 VHEACREGRLHIVRLFLETD-SWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLL 132
+H A R+G+ VR +ET S + NR +AL++AC+ G +D K L + V L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASVGEVHSL 81
Query: 133 EMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTL---CSSKGHLEITR 189
+H+A A ++V L+E E G+ P +L C + EI
Sbjct: 82 WHGQ---KPIHLAVXANKTDLVVALVEGAKE-------RGQXPESLLNECDEREVNEIG- 130
Query: 190 ELLKMDPDLSSSQDNEGRTPLHW 212
S + +G+T LHW
Sbjct: 131 ---------SHVKHCKGQTALHW 144
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 40/138 (28%)
Query: 125 NYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGH 184
++P ++ ++ DD +HVAA G + V L+E G +P
Sbjct: 7 DFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIE-----------TGVSP--------- 46
Query: 185 LEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTL-HGETV 243
+ Q+ G T LH A G V+ + SV E+ +L HG+
Sbjct: 47 ---------------TIQNRFGCTALHLACKFGCVDTAKYLASV----GEVHSLWHGQKP 87
Query: 244 LHLGVKNNQYEAVKHLME 261
+HL V N+ + V L+E
Sbjct: 88 IHLAVXANKTDLVVALVE 105
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 78 CREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGR-LDVVKQLLNYPSVSLLEMDD 136
+E ++V + W+V +N N E+ YVA R LD V +LN+ + +++ +
Sbjct: 1867 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1926
Query: 137 GLTTSLHVAASAGHL-EIVNE 156
L SL + GHL EI++E
Sbjct: 1927 -LQKSLSLEEVEGHLFEIIDE 1946
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 171 NGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230
GR PL + G LEI LL D+++ D TPL A +G V+ + +LS
Sbjct: 34 GGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 231 ESSEIRTLHGETVLHLGVKNNQYEAVKHLME 261
+ + ++ G T L +NQ A+K L++
Sbjct: 93 DKT-VKGPDGLTALE--ATDNQ--AIKALLQ 118
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 171 NGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230
GR PL + G LEI LL D+++ D TPL A +G V+ + +LS
Sbjct: 39 GGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 231 ESSEIRTLHGETVLHLGVKNNQYEAVKHLME 261
+ + ++ G T +NQ A+K L++
Sbjct: 98 DKT-VKGPDGLTAFE--ATDNQ--AIKALLQ 123
>pdb|2AHD|A Chain A, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|B Chain B, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|C Chain C, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|D Chain D, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
Length = 165
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 179 CSSKGHLEITRELLKMDPDL-SSSQDNEG-RTPL-HWATIKGRVNIIDEILSVNLESSEI 235
C L + +E ++ ++ ++ +N+G R L W NIID+ +SV ++ +
Sbjct: 34 CGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKF 93
Query: 236 RTLHG--ETVLHLGVKNNQYEAV 256
HG ++VL + +K+ Y+ V
Sbjct: 94 FITHGHHQSVLEMAIKSGLYDVV 116
>pdb|1S3L|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3L|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
Length = 190
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 179 CSSKGHLEITRELLKMDPDL-SSSQDNEG-RTPL-HWATIKGRVNIIDEILSVNLESSEI 235
C L + +E ++ ++ ++ +N+G R L W NIID+ +SV ++ +
Sbjct: 59 CGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKF 118
Query: 236 RTLHG--ETVLHLGVKNNQYEAV 256
HG ++VL + +K+ Y+ V
Sbjct: 119 FITHGHHQSVLEMAIKSGLYDVV 141
>pdb|3K0Y|A Chain A, Crystal Structure Of Putative Toxin Related Protein
(Yp_001303978.1) From Parabacteroides Distasonis Atcc
8503 At 2.16 A Resolution
Length = 229
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 5 LFETVLKGETPNFLNLVQKDEE 26
FET+ G+T +F+NL+Q D E
Sbjct: 123 YFETLWGGKTAHFINLIQPDAE 144
>pdb|4GEF|A Chain A, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|B Chain B, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|C Chain C, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|D Chain D, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|E Chain E, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|F Chain F, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|G Chain G, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|H Chain H, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|I Chain I, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|J Chain J, Product Complex Of Lumazine Synthase From Candida
Glabrata
Length = 179
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 5 LFETVLKGETPNFLNLVQKDEEIIKQTVPGSL 36
+ + ++KG L+L K+E II +TVPGS
Sbjct: 42 IIDALVKGAIDRMLSLGVKEENIIVETVPGSF 73
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 78 CREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGR-LDVVKQLLNYPSVSLLEMDD 136
+E ++V + W+V +N N E+ YVA R LD V +LN+ + +++ +
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 137 GLTTSLHVAASAGHL 151
L SL + GHL
Sbjct: 1882 -LQKSLSLEEVEGHL 1895
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 46 YGHEELALEILK--LCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRN 103
+G +ALE+LK P + A+ +PVH+A R G L +++ +E + V+ ++
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGT---SPVHDAARTGFLDTLKVLVEHGAD-VNALDST 108
Query: 104 KESALYVACERGRLDVVKQL 123
+++A G VV L
Sbjct: 109 GSLPIHLAIREGHSSVVSFL 128
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T AA + +++LLE R D NGRT L + G + R L + DL
Sbjct: 47 TPWWTAARKADEQALSQLLEDRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHL 246
G T LH A R +++ ++ + + E+ G T L L
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALEL 150
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 46 YGHEELALEILK--LCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRN 103
+G +ALE+LK P + A+ +PVH+A R G L +++ +E + V+ ++
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGT---SPVHDAARTGFLDTLKVLVEHGAD-VNALDST 106
Query: 104 KESALYVACERGRLDVVKQL 123
+++A G VV L
Sbjct: 107 GSLPIHLAIREGHSSVVSFL 126
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLS 199
T AA + +++LLE R D NGRT L + G + R L + DL
Sbjct: 46 TPWWTAARKADEQALSQLLEDRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 200 SSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHL 246
G T LH A R +++ ++ + + E+ G T L L
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALEL 149
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 69 KLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPS 128
+ ETP A R+ + LE V ++ N +AL G D +LL
Sbjct: 43 EYETPWWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGS-DKCVRLLAEAG 99
Query: 129 VSL--LEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLE 186
L +M GLT +LH+AA E+V L+E + +D G T LE
Sbjct: 100 ADLDHRDMRGGLT-ALHMAAGYVRPEVVEALVELGADIE-VEDERGLTA---------LE 148
Query: 187 ITRELLKMDP 196
+ RE+LK P
Sbjct: 149 LAREILKTTP 158
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 33/127 (25%)
Query: 97 VHKMNRNKESALYVACERGRLDVVKQLLNYPS------------VSLLEMDDG------- 137
+H + + ++ L A RG+++ V+QLL + + ++ M
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLL 64
Query: 138 -------------LTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGH 184
LT +H AA G L+ + L A D GR P+ L +GH
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGH 123
Query: 185 LEITREL 191
+I R L
Sbjct: 124 RDIARYL 130
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 171 NGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230
+G TPL L + + +L+ D+++ D+ G++ LHWA V+ +L N
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLK-NG 71
Query: 231 ESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPD 273
+ +++ ET L L + YE K L++ + + D
Sbjct: 72 ANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMD 114
>pdb|3VLN|A Chain A, Human Glutathione Transferase O1-1 C32s Mutant In Complex
With Ascorbic Acid
Length = 241
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHL 185
T L + A E++N L+ +PE+ +KK+P G P+ L +S+G L
Sbjct: 38 TRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPV-LENSQGQL 82
>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
Length = 241
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHL 185
T L + A E++N L+ +PE+ +KK+P G P+ L +S+G L
Sbjct: 38 TRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPV-LENSQGQL 82
>pdb|3LFL|A Chain A, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|B Chain B, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|C Chain C, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
Length = 240
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 140 TSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHL 185
T L + A E++N L+ +PE+ +KK+P G P+ L +S+G L
Sbjct: 38 TRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPV-LENSQGQL 82
>pdb|3C9R|A Chain A, Aathil Complexed With Atp
pdb|3C9R|B Chain B, Aathil Complexed With Atp
pdb|3C9S|A Chain A, Aathil Complexed With Amppcp
pdb|3C9S|B Chain B, Aathil Complexed With Amppcp
pdb|3C9T|A Chain A, Aathil Complexed With Amppcp And Tmp
pdb|3C9T|B Chain B, Aathil Complexed With Amppcp And Tmp
pdb|3C9U|A Chain A, Aathil Complexed With Adp And Tpp
pdb|3C9U|B Chain B, Aathil Complexed With Adp And Tpp
Length = 342
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 116 RLDVVKQLLNYPSVSLLEMDDGLTTSL-HVAASAG-HLEIVNELLEARPEFTWKKDPNGR 173
R+D VK + Y + S +++ DGL H+A +G +EI++E L E + G+
Sbjct: 227 RIDYVKHIQKYANAS-MDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYCEKYGK 285
Query: 174 TPL 176
P+
Sbjct: 286 NPI 288
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 191 LLKMDPDLSSSQDNEGRTPLHWATI 215
LL +DPD + QD + R LHW+ +
Sbjct: 58 LLMVDPDAPTRQDPKYREILHWSVV 82
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 240 GETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280
GE L L Q++ V +L+E + + D+ GNT+L
Sbjct: 141 GELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVL 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,384,886
Number of Sequences: 62578
Number of extensions: 335818
Number of successful extensions: 1686
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 358
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)