Query 041966
Match_columns 280
No_of_seqs 276 out of 1410
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 21:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 2E-48 6.7E-53 301.1 26.8 264 3-274 7-284 (285)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-48 4E-53 319.8 25.0 266 4-280 116-381 (437)
3 1n11_A Ankyrin; clathrin, BAND 100.0 4.1E-48 1.4E-52 316.6 25.0 266 3-279 16-281 (437)
4 3utm_A Tankyrase-1; tankyrase, 100.0 1.6E-46 5.6E-51 298.7 24.2 268 3-280 26-317 (351)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 1.8E-46 6.3E-51 285.0 18.8 230 31-264 5-247 (253)
6 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-46 6.3E-51 286.2 18.7 236 35-280 2-242 (261)
7 3d9h_A CDNA FLJ77766, highly s 100.0 4.7E-46 1.6E-50 287.3 18.9 252 2-263 16-276 (285)
8 4g8k_A 2-5A-dependent ribonucl 100.0 8.9E-45 3.1E-49 287.1 24.8 254 3-265 27-326 (337)
9 3d9h_A CDNA FLJ77766, highly s 100.0 2.9E-45 1E-49 282.8 20.6 238 33-280 12-259 (285)
10 1wdy_A 2-5A-dependent ribonucl 100.0 7.6E-45 2.6E-49 281.0 22.6 238 35-280 4-257 (285)
11 3ljn_A Hypothetical protein; a 100.0 1.7E-45 5.9E-50 294.2 19.1 229 30-265 14-269 (364)
12 3b7b_A Euchromatic histone-lys 100.0 9.3E-45 3.2E-49 273.2 22.0 228 31-263 6-233 (237)
13 3aji_A 26S proteasome non-ATPa 100.0 3.4E-44 1.2E-48 269.1 21.6 227 33-264 3-229 (231)
14 1k1a_A B-cell lymphoma 3-encod 100.0 5.6E-45 1.9E-49 275.1 17.3 230 31-264 4-240 (241)
15 2fo1_E LIN-12 protein; beta-ba 100.0 2.3E-45 8E-50 293.7 15.3 254 3-265 96-371 (373)
16 1oy3_D Transcription factor in 100.0 2.5E-44 8.6E-49 277.8 18.6 244 31-280 4-262 (282)
17 2xai_A ASB-9, ankyrin repeat a 100.0 1.4E-43 4.9E-48 270.2 21.4 248 3-261 5-259 (261)
18 2fo1_E LIN-12 protein; beta-ba 100.0 5.5E-45 1.9E-49 291.6 12.0 240 31-280 89-350 (373)
19 3ljn_A Hypothetical protein; a 100.0 2.4E-43 8.3E-48 281.7 20.9 254 3-265 22-314 (364)
20 2dzn_A Probable 26S proteasome 100.0 6.5E-43 2.2E-47 261.6 21.9 222 36-262 2-227 (228)
21 4b93_B Ankyrin repeat domain-c 100.0 1.8E-44 6E-49 275.4 12.8 238 32-274 7-253 (269)
22 3eu9_A Huntingtin-interacting 100.0 2.3E-42 7.9E-47 260.6 22.2 230 32-265 5-235 (240)
23 2dzn_A Probable 26S proteasome 100.0 3.7E-42 1.3E-46 257.6 21.2 206 70-280 2-212 (228)
24 3aji_A 26S proteasome non-ATPa 100.0 6E-42 2E-46 256.9 20.7 223 2-230 7-229 (231)
25 2f8y_A Notch homolog 1, transl 100.0 1.6E-42 5.4E-47 258.7 16.4 215 47-265 2-216 (223)
26 1yyh_A HN1;, notch 1, ankyrin 100.0 6.1E-42 2.1E-46 260.1 18.8 223 3-230 12-247 (253)
27 3b7b_A Euchromatic histone-lys 100.0 1.9E-41 6.4E-46 255.2 20.3 210 63-280 4-214 (237)
28 3utm_A Tankyrase-1; tankyrase, 100.0 5.2E-41 1.8E-45 267.0 24.0 250 3-264 60-333 (351)
29 1k1a_A B-cell lymphoma 3-encod 100.0 4E-41 1.4E-45 254.0 22.0 211 63-280 2-220 (241)
30 3kea_A K1L; tropism, ANK repea 100.0 5.1E-42 1.7E-46 264.6 16.3 239 8-265 6-246 (285)
31 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-40 3.7E-45 263.7 23.9 222 3-234 61-328 (337)
32 1oy3_D Transcription factor in 100.0 2.3E-41 8E-46 261.1 18.8 246 3-251 11-269 (282)
33 4b93_B Ankyrin repeat domain-c 100.0 7.6E-42 2.6E-46 260.9 15.1 220 3-227 13-240 (269)
34 1s70_B 130 kDa myosin-binding 100.0 3.1E-41 1.1E-45 262.6 15.4 250 7-262 4-286 (299)
35 2f8y_A Notch homolog 1, transl 100.0 1.3E-40 4.5E-45 248.3 17.8 215 12-231 2-216 (223)
36 1s70_B 130 kDa myosin-binding 100.0 2.2E-40 7.5E-45 257.8 15.1 220 3-229 42-287 (299)
37 1ikn_D Protein (I-kappa-B-alph 100.0 5.4E-41 1.9E-45 252.4 9.4 216 31-249 3-228 (236)
38 3eu9_A Huntingtin-interacting 100.0 5E-39 1.7E-43 242.3 20.0 223 3-230 11-234 (240)
39 3kea_A K1L; tropism, ANK repea 100.0 2.6E-39 8.8E-44 249.5 17.4 218 44-274 7-226 (285)
40 1ikn_D Protein (I-kappa-B-alph 100.0 6E-40 2.1E-44 246.7 11.8 213 64-280 2-223 (236)
41 2rfa_A Transient receptor pote 100.0 1.7E-38 5.7E-43 238.3 19.3 208 35-265 2-222 (232)
42 2rfa_A Transient receptor pote 100.0 2.9E-38 1E-42 237.0 20.2 206 2-232 4-223 (232)
43 3hra_A Ankyrin repeat family p 100.0 2.4E-38 8.1E-43 232.3 18.7 192 34-228 3-200 (201)
44 3hra_A Ankyrin repeat family p 100.0 9.8E-37 3.3E-41 223.7 19.6 193 67-263 2-201 (201)
45 2etb_A Transient receptor pote 100.0 1.9E-37 6.5E-42 235.9 15.5 203 35-265 1-246 (256)
46 1sw6_A Regulatory protein SWI6 100.0 8.5E-39 2.9E-43 251.2 8.2 246 11-280 29-320 (327)
47 2pnn_A Transient receptor pote 100.0 3.9E-37 1.3E-41 236.3 13.6 220 31-279 8-270 (273)
48 2pnn_A Transient receptor pote 100.0 3.4E-37 1.1E-41 236.7 13.1 219 3-243 15-270 (273)
49 2etb_A Transient receptor pote 100.0 7.1E-37 2.4E-41 232.7 14.4 204 3-231 4-246 (256)
50 1sw6_A Regulatory protein SWI6 100.0 2E-37 6.9E-42 243.4 9.2 228 11-251 57-327 (327)
51 3jxi_A Vanilloid receptor-rela 100.0 9.5E-36 3.3E-40 227.0 16.0 206 33-266 2-251 (260)
52 4gpm_A Engineered protein OR26 100.0 3.1E-35 1E-39 208.2 16.3 158 38-199 6-163 (169)
53 4gpm_A Engineered protein OR26 100.0 1.6E-34 5.3E-39 204.6 17.1 154 107-264 7-160 (169)
54 3jxi_A Vanilloid receptor-rela 100.0 1.1E-35 3.9E-40 226.6 11.7 207 3-231 7-250 (260)
55 4hbd_A KN motif and ankyrin re 100.0 1.2E-34 4E-39 222.4 13.9 194 69-264 75-274 (276)
56 3v30_A DNA-binding protein rfx 100.0 1E-33 3.5E-38 202.4 17.4 170 104-279 2-171 (172)
57 4hbd_A KN motif and ankyrin re 100.0 3.8E-34 1.3E-38 219.5 15.3 193 35-230 75-274 (276)
58 3v30_A DNA-binding protein rfx 100.0 2.1E-33 7.3E-38 200.7 14.7 159 37-198 3-161 (172)
59 2rfm_A Putative ankyrin repeat 100.0 1.2E-32 4.1E-37 200.3 15.8 162 63-262 28-189 (192)
60 2rfm_A Putative ankyrin repeat 100.0 1.9E-32 6.5E-37 199.3 16.3 143 132-280 29-171 (192)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.2E-32 7.6E-37 193.5 15.0 157 104-264 5-161 (162)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.8E-32 9.7E-37 193.0 13.8 157 36-196 5-161 (162)
63 2aja_A Ankyrin repeat family p 100.0 1.2E-34 4E-39 229.8 0.9 226 34-279 90-352 (376)
64 3f6q_A Integrin-linked protein 100.0 8.9E-32 3E-36 193.5 15.9 168 103-276 4-171 (179)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 9E-32 3.1E-36 191.6 15.6 157 34-194 12-168 (169)
66 3v31_A Ankyrin repeat family A 100.0 1.1E-31 3.8E-36 190.8 16.0 157 104-264 3-159 (167)
67 3v31_A Ankyrin repeat family A 100.0 7.8E-32 2.7E-36 191.7 15.2 156 36-229 3-158 (167)
68 3twr_A Tankyrase-2; ankyrin re 100.0 5.5E-32 1.9E-36 192.1 13.6 159 101-263 5-163 (165)
69 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.2E-31 7.7E-36 189.5 16.1 155 104-262 14-168 (169)
70 2vge_A RELA-associated inhibit 100.0 2.9E-35 9.8E-40 219.3 -4.3 183 35-223 20-205 (229)
71 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.5E-31 8.6E-36 186.9 14.5 154 104-262 2-155 (156)
72 2aja_A Ankyrin repeat family p 100.0 6.2E-34 2.1E-38 225.7 1.3 242 3-262 94-371 (376)
73 3f6q_A Integrin-linked protein 100.0 2.5E-31 8.5E-36 191.2 14.6 163 35-200 4-166 (179)
74 2vge_A RELA-associated inhibit 100.0 6.7E-35 2.3E-39 217.4 -4.4 203 52-260 1-208 (229)
75 3twr_A Tankyrase-2; ankyrin re 100.0 4.3E-31 1.5E-35 187.4 14.5 159 67-229 5-163 (165)
76 1awc_B Protein (GA binding pro 100.0 7.2E-31 2.4E-35 183.9 14.8 149 106-259 4-152 (153)
77 1awc_B Protein (GA binding pro 100.0 1.7E-30 5.9E-35 181.9 15.3 149 72-225 4-152 (153)
78 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.7E-30 9.3E-35 181.6 14.0 151 37-192 3-153 (156)
79 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.6E-30 8.7E-35 194.3 10.9 178 69-252 4-193 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 100.0 6.5E-30 2.2E-34 192.1 10.7 159 102-265 3-164 (239)
81 3t8k_A Uncharacterized protein 100.0 8.8E-29 3E-33 178.0 10.6 163 104-274 6-185 (186)
82 1bi7_B P16INK4A, MTS1, multipl 100.0 7.1E-29 2.4E-33 174.2 9.7 140 134-280 8-148 (156)
83 1d9s_A Cyclin-dependent kinase 100.0 2.1E-28 7.2E-33 167.7 11.6 133 128-264 2-135 (136)
84 1d9s_A Cyclin-dependent kinase 99.9 8.5E-28 2.9E-32 164.7 8.9 88 138-228 45-133 (136)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 8.2E-27 2.8E-31 159.8 12.8 127 134-263 10-136 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.4E-26 8.3E-31 155.4 14.4 125 137-264 1-125 (126)
87 1bi7_B P16INK4A, MTS1, multipl 99.9 2.7E-27 9.2E-32 166.1 9.7 141 66-211 8-149 (156)
88 3t8k_A Uncharacterized protein 99.9 4.4E-27 1.5E-31 169.1 10.3 160 37-229 7-177 (186)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.1E-25 3.8E-30 152.1 13.5 57 36-93 2-58 (126)
90 3ui2_A Signal recognition part 99.9 2.4E-27 8.4E-32 178.4 5.5 169 70-263 15-183 (244)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 1.1E-25 3.9E-30 154.1 11.8 55 38-93 16-70 (136)
92 3deo_A Signal recognition part 99.9 1.7E-25 5.9E-30 161.1 11.9 142 100-262 40-181 (183)
93 3c5r_A BARD-1, BRCA1-associate 99.9 7.3E-26 2.5E-30 155.3 8.2 127 133-262 5-131 (137)
94 3ui2_A Signal recognition part 99.9 1.1E-26 3.7E-31 174.9 3.8 171 34-229 13-183 (244)
95 3deo_A Signal recognition part 99.9 5.4E-25 1.8E-29 158.5 9.9 141 67-228 41-181 (183)
96 1dcq_A PYK2-associated protein 99.9 1.3E-23 4.3E-28 160.8 16.8 196 65-266 61-264 (278)
97 3aaa_C Myotrophin, protein V-1 99.9 1.4E-24 4.6E-29 146.1 10.0 118 135-255 4-121 (123)
98 3c5r_A BARD-1, BRCA1-associate 99.9 1E-24 3.6E-29 149.5 9.1 127 100-229 6-132 (137)
99 3ehr_A Osteoclast-stimulating 99.9 7.4E-25 2.5E-29 162.8 8.7 128 135-265 70-198 (222)
100 2b0o_E UPLC1; arfgap, structur 99.9 3.3E-24 1.1E-28 165.8 12.6 123 140-264 153-283 (301)
101 3ehr_A Osteoclast-stimulating 99.9 1E-24 3.4E-29 162.1 8.9 133 64-198 67-199 (222)
102 3jue_A Arfgap with coiled-coil 99.9 2.2E-23 7.4E-28 164.7 13.4 141 137-280 198-341 (368)
103 2b0o_E UPLC1; arfgap, structur 99.9 2.6E-23 8.8E-28 160.8 13.2 140 105-253 152-299 (301)
104 1dcq_A PYK2-associated protein 99.9 6.1E-23 2.1E-27 157.0 14.5 194 32-231 62-263 (278)
105 3aaa_C Myotrophin, protein V-1 99.9 1.8E-23 6E-28 140.6 9.7 110 103-215 6-115 (123)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2.7E-22 9.2E-27 127.8 10.0 91 172-264 2-92 (93)
107 3lvq_E ARF-GAP with SH3 domain 99.9 4.7E-22 1.6E-26 164.5 13.9 122 140-264 134-264 (497)
108 2l6b_A NR1C; ankyrin, consensu 99.9 1.2E-22 4.1E-27 134.8 7.8 108 167-279 4-111 (115)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2.3E-21 7.7E-26 123.4 11.2 91 138-230 2-92 (93)
110 3jue_A Arfgap with coiled-coil 99.9 2.3E-21 7.9E-26 153.2 12.0 147 102-251 197-348 (368)
111 3lvq_E ARF-GAP with SH3 domain 99.9 2.2E-21 7.5E-26 160.5 11.8 126 72-200 134-268 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.9 3.9E-21 1.3E-25 127.5 9.9 109 133-244 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2.4E-19 8.1E-24 117.7 7.5 92 30-123 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 2.3E-18 7.9E-23 112.9 10.3 88 135-224 21-108 (110)
115 3gvo_A Pumilio 2, pumilio homo 94.5 0.48 1.6E-05 37.1 10.5 254 9-262 45-318 (351)
116 3k49_A MRNA-binding protein PU 91.1 2.1 7.2E-05 33.7 9.8 176 8-183 49-233 (369)
117 3gvo_A Pumilio 2, pumilio homo 89.1 0.85 2.9E-05 35.7 6.0 250 3-255 5-268 (351)
118 3v71_A PUF (pumilio/FBF) domai 77.2 3.5 0.00012 32.6 5.0 93 25-118 60-159 (382)
119 3mkq_B Coatomer subunit alpha; 76.9 16 0.00054 25.3 11.4 128 4-159 11-139 (177)
120 3a7m_A Flagellar protein FLIT; 75.1 3.2 0.00011 26.7 3.4 60 2-61 18-77 (122)
121 1gp8_A Protein (scaffolding pr 74.3 1.4 4.7E-05 21.4 1.1 20 2-21 14-33 (40)
122 3k49_A MRNA-binding protein PU 73.2 9.1 0.00031 30.1 6.4 124 28-151 34-163 (369)
123 3v71_A PUF (pumilio/FBF) domai 64.6 46 0.0016 26.3 8.7 164 28-193 100-290 (382)
124 3h3m_A Flagellar protein FLIT; 64.6 3.8 0.00013 26.5 2.1 59 3-61 32-90 (126)
125 3k62_A FEM-3 mRNA-binding fact 59.2 14 0.00049 29.5 5.0 98 28-125 72-182 (412)
126 3zrh_A Ubiquitin thioesterase 59.0 7.5 0.00026 30.7 3.1 51 8-58 29-91 (454)
127 3mkq_B Coatomer subunit alpha; 57.2 45 0.0015 23.0 10.3 131 37-194 9-140 (177)
128 3nkz_A Flagellar protein FLIT; 48.3 4.7 0.00016 26.0 0.4 60 2-61 21-80 (123)
129 3zrh_A Ubiquitin thioesterase 41.4 53 0.0018 26.2 5.3 23 171-193 68-90 (454)
130 4g26_A Pentatricopeptide repea 37.1 41 0.0014 27.7 4.5 18 40-57 33-50 (501)
131 3k62_A FEM-3 mRNA-binding fact 30.7 2.1E+02 0.0071 22.9 13.4 155 30-186 117-303 (412)
132 3bwt_A Protein PUF4; pumilio, 26.4 1.5E+02 0.0053 22.5 5.9 167 25-193 13-190 (333)
133 3t5x_A PCI domain-containing p 26.0 1.1E+02 0.0037 21.6 4.6 27 36-62 82-108 (203)
134 1vdy_A Hypothetical protein (R 21.4 85 0.0029 20.7 3.0 9 50-58 49-57 (140)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-48 Score=301.15 Aligned_cols=264 Identities=21% Similarity=0.233 Sum_probs=238.7
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGR 82 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 82 (280)
.+|+.|++.|+.+.++.+++.+.... ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 84 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCC
Confidence 57999999999999999999887642 23367899999999999999999999999988 78899999999999999999
Q ss_pred HHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCcccccc---------ccCCchHHHHHHhcCCHHH
Q 041966 83 LHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEM---------DDGLTTSLHVAASAGHLEI 153 (280)
Q Consensus 83 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~---------~~~~~~~l~~a~~~~~~~~ 153 (280)
.+++++|++.++ ..+..+..|.||||+|+..|+.+++++|++.+....... +..|.||||+|+..++.++
T Consensus 85 ~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T 1wdy_A 85 VKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp HHHHHHHHHTTC-CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCC-CCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence 999999999998 566778999999999999999999999999865443321 6778899999999999999
Q ss_pred HHHHHHh-CCCCccCCCCCCCcHHHHHHhcCc----HHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHh
Q 041966 154 VNELLEA-RPEFTWKKDPNGRTPLTLCSSKGH----LEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSV 228 (280)
Q Consensus 154 ~~~ll~~-~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 228 (280)
+++|++. |.+++ ..+..|.||||+|+..++ .+++++|+++|++++. .+..|.||||+|+..++.+++++|++.
T Consensus 164 v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 241 (285)
T 1wdy_A 164 LKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQ 241 (285)
T ss_dssp HHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred HHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 9999998 88887 889999999999999999 8999999999999875 889999999999999999999999996
Q ss_pred cccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCC
Q 041966 229 NLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDN 274 (280)
Q Consensus 229 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~ 274 (280)
.+.+++.+|..|.||||+|++.++.+++++|+++|+ +++.+|.
T Consensus 242 ~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga---~~~~~d~ 284 (285)
T 1wdy_A 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA---STDCGDL 284 (285)
T ss_dssp SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS---CSCCSSC
T ss_pred cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC---CCCcccc
Confidence 668889999999999999999999999999999955 4777763
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-48 Score=319.79 Aligned_cols=266 Identities=27% Similarity=0.362 Sum_probs=193.4
Q ss_pred HHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcH
Q 041966 4 RLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRL 83 (280)
Q Consensus 4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 83 (280)
+|+.|+..|+.+.++.+++.+... ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.
T Consensus 116 ~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~ 192 (437)
T 1n11_A 116 PLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNL 192 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCC--cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCH
Confidence 344444444444444444443322 12234555666666666666666666665555 455566666666666666666
Q ss_pred HHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCC
Q 041966 84 HIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPE 163 (280)
Q Consensus 84 ~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~ 163 (280)
+++++|++.+. .....+..|.||||+|+..++.+++++|++.+. ..+..+..|.||||+|+..|+.+++++|++.+++
T Consensus 193 ~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 270 (437)
T 1n11_A 193 DIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270 (437)
T ss_dssp HHHHHHGGGTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence 66666666665 334445566777777777777777777777643 3445566777888888888888888888888888
Q ss_pred CccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCch
Q 041966 164 FTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETV 243 (280)
Q Consensus 164 ~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 243 (280)
++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||
T Consensus 271 ~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~ 347 (437)
T 1n11_A 271 GN-LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSP 347 (437)
T ss_dssp TT-CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred CC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC-CCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCH
Confidence 76 6788888888888888888899999988888765 7888999999999999999999999887 5777888899999
Q ss_pred HHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 244 LHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 244 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
||+|+..|+.+++++|++. |++++.+|.+|+|||
T Consensus 348 L~~A~~~g~~~iv~~Ll~~---ga~~~~~~~~g~t~l 381 (437)
T 1n11_A 348 LHQAAQQGHTDIVTLLLKN---GASPNEVSSDGTTPL 381 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHT---TCCSCCCCSSSCCHH
T ss_pred HHHHHHCChHHHHHHHHHC---cCCCCCCCCCCCCHH
Confidence 9999999999999999988 455889999999985
No 3
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-48 Score=316.57 Aligned_cols=266 Identities=29% Similarity=0.363 Sum_probs=179.6
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGR 82 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 82 (280)
.+|+.|+..|+.+.++.|++.+.+. ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTC
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCC
Confidence 4788888888888888888876553 34466788888888888888888888888877 77888888888888888888
Q ss_pred HHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCC
Q 041966 83 LHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162 (280)
Q Consensus 83 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 162 (280)
.+++++|++.|+ ..+..+..|.||||+|+..|+.+++++|++.+. .....+..|.||||+|+..|+.+++++|+++|+
T Consensus 93 ~~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 170 (437)
T 1n11_A 93 TNMVKLLLENNA-NPNLATTAGHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170 (437)
T ss_dssp HHHHHHHHHHTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 888888888887 455667777788888888888888877777643 233445556667777777777777777777666
Q ss_pred CCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCc
Q 041966 163 EFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGET 242 (280)
Q Consensus 163 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 242 (280)
+++ ..+..|.||||+|+..++.+++++|+++|+++.. .+..|.||||+|+..++.+++++|++.+ .+++..+..|.|
T Consensus 171 ~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t 247 (437)
T 1n11_A 171 HPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVT 247 (437)
T ss_dssp CTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCC
T ss_pred CCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCC
Confidence 665 5566666666666666666666666666665443 4555555555555555555555555554 234444445555
Q ss_pred hHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCC
Q 041966 243 VLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTI 279 (280)
Q Consensus 243 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~ 279 (280)
|||+|+..|+.+++++|++.+ ++++.+|..|+||
T Consensus 248 ~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~g~t~ 281 (437)
T 1n11_A 248 PLHLAAQEGHAEMVALLLSKQ---ANGNLGNKSGLTP 281 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHTTT---CCTTCCCTTCCCH
T ss_pred HHHHHHHCCCHHHHHHHHhcC---CCCCCCCCCCCCH
Confidence 555555555555555555442 2244444444444
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.6e-46 Score=298.75 Aligned_cols=268 Identities=19% Similarity=0.248 Sum_probs=232.8
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGR 82 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 82 (280)
.+|+.|++.|+.+.++.++...+... ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~ 103 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGH 103 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTC-CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCCC
Confidence 57999999999999999998755433 34578899999999999999999999999988 88999999999999999999
Q ss_pred HHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHH------------------
Q 041966 83 LHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHV------------------ 144 (280)
Q Consensus 83 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~------------------ 144 (280)
.+++++|++.++ .++..+..|.||||+|+..|+.+++++|++++. .....+..+.++++.
T Consensus 104 ~~iv~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~ 181 (351)
T 3utm_A 104 YEVTELLLKHGA-CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA-DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181 (351)
T ss_dssp HHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCccccCCCCcchHHHhhhhhHHHHHhhhcccH
Confidence 999999999998 566778899999999999999999999999854 445556666777655
Q ss_pred ---HHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCC
Q 041966 145 ---AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSK---GHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGR 218 (280)
Q Consensus 145 ---a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~ 218 (280)
++..++.+.++.++....... ..+..|.||||+|+.. +..+++++|++.|++++. .+..|.||||+|+..|+
T Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~ 259 (351)
T 3utm_A 182 LLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMTPLHVAAERAH 259 (351)
T ss_dssp HHHHHHTTCHHHHHHHTTTCCTTC-CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHhhcccc-cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHHcCC
Confidence 455666777777776655443 6778899999999998 668999999999999876 78899999999999999
Q ss_pred hhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 219 VNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 219 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+|||
T Consensus 260 ~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~~g~tal 317 (351)
T 3utm_A 260 NDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSY---GSDPSIISLQGFTAA 317 (351)
T ss_dssp HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHH
T ss_pred HHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCCCcCCCCCChh
Confidence 99999999988 67888999999999999999999999999998 455899999999985
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.8e-46 Score=284.99 Aligned_cols=230 Identities=18% Similarity=0.171 Sum_probs=183.5
Q ss_pred hcCCCCcchhHHHHhcC-------------CHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhh
Q 041966 31 TVPGSLNTVLHLAARYG-------------HEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV 97 (280)
Q Consensus 31 ~~~~~g~~~L~~A~~~g-------------~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 97 (280)
..+..|.||||+|+..| +.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.|+ ..
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~ 83 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DA 83 (253)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CT
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CC
Confidence 45788999999999987 89999999999999667779999999999999999999999999998 66
Q ss_pred hhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHH
Q 041966 98 HKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLT 177 (280)
Q Consensus 98 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~ 177 (280)
+..+..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||
T Consensus 84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~ 162 (253)
T 1yyh_A 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALH 162 (253)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-CBCTTSCBHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-CcCCCCCCHHH
Confidence 77789999999999999999999999999887888888999999999999999999999999999998 88999999999
Q ss_pred HHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHH
Q 041966 178 LCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVK 257 (280)
Q Consensus 178 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 257 (280)
+|+..++.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.||+++|++.|+.++++
T Consensus 163 ~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~ 240 (253)
T 1yyh_A 163 WAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVR 240 (253)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999999876 8999999999999999999999999998 577889999999999999999999999
Q ss_pred HHHHhcc
Q 041966 258 HLMETLN 264 (280)
Q Consensus 258 ~Ll~~~~ 264 (280)
+|.....
T Consensus 241 ~l~~~~~ 247 (253)
T 1yyh_A 241 LLDLEHH 247 (253)
T ss_dssp HHHC---
T ss_pred HHHHHhh
Confidence 9987654
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.9e-46 Score=286.20 Aligned_cols=236 Identities=21% Similarity=0.284 Sum_probs=201.9
Q ss_pred CCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhc
Q 041966 35 SLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACER 114 (280)
Q Consensus 35 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~ 114 (280)
.|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGA-QVNGVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHc
Confidence 578999999999999999999998877 78888999999999999999999999999987 5667788899999999999
Q ss_pred CcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhc
Q 041966 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194 (280)
Q Consensus 115 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~ 194 (280)
|+.+++++|++.+.... .+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999999865443 23457889999999999999999999999887 7888899999999999999999999999
Q ss_pred CCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccc-----ccc
Q 041966 195 DPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTT-----KLV 269 (280)
Q Consensus 195 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~ 269 (280)
|++++ .+..|.||||+|+..++.+++++|++.+ .+++.+|..|+||+++|+..+ +++++|++.++.. +.+
T Consensus 157 g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~ 231 (261)
T 2xai_A 157 GADVN--QGKGQDSPLHAVARTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRL 231 (261)
T ss_dssp TCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHH
T ss_pred CCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHH
Confidence 99876 3778899999999999999999999987 577889999999999998654 4888898876543 356
Q ss_pred CCCCCCCCCCC
Q 041966 270 NTPDNDGNTIL 280 (280)
Q Consensus 270 ~~~d~~g~t~L 280 (280)
+.+|..|+|||
T Consensus 232 ~~r~~~g~t~l 242 (261)
T 2xai_A 232 RIRKCFGIQQH 242 (261)
T ss_dssp HHHTTSCTTCG
T ss_pred HHHHHhchhcc
Confidence 78899999985
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.7e-46 Score=287.27 Aligned_cols=252 Identities=20% Similarity=0.250 Sum_probs=205.7
Q ss_pred ChHHHHHHHcCChhHHHHHHhhcHHH---------HhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcc
Q 041966 2 DERLFETVLKGETPNFLNLVQKDEEI---------IKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLET 72 (280)
Q Consensus 2 ~~~l~~a~~~g~~~~~~~ll~~~~~~---------~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t 72 (280)
...+|.|++.|+.+.+.+++...+.. .....+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.|
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~g~t 94 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVS 94 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEECTTCCC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence 35789999999998888876654321 1124567899999999999999999999999887 8899999999
Q ss_pred hHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHH
Q 041966 73 PVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLE 152 (280)
Q Consensus 73 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 152 (280)
|||+|+..|+.+++++|++.++ ..+..+..|.||||+|+..|+.+++++|++.+..... +..|.||||+|+..|+.+
T Consensus 95 ~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~ 171 (285)
T 3d9h_A 95 PLHEACLGGHLSCVKILLKHGA-QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVE 171 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC-CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHH
T ss_pred HHHHHHHCCcHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999998 6677789999999999999999999999998654432 344889999999999999
Q ss_pred HHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccc
Q 041966 153 IVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLES 232 (280)
Q Consensus 153 ~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~ 232 (280)
++++|++.|++++ ..+..|.||||+|+..++.+++++|++.|++++ .+..|.||||+|+..++.+++++|++.+ .+
T Consensus 172 ~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad 247 (285)
T 3d9h_A 172 CVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFG-AD 247 (285)
T ss_dssp HHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred HHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC
Confidence 9999999999998 889999999999999999999999999999986 4788999999999999999999999987 67
Q ss_pred hhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 233 SEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 233 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
++.+|..|+|||++|+ ++.+++++|++..
T Consensus 248 ~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 248 TQAKNAEGKRPVELVP--PESPLAQLFLERE 276 (285)
T ss_dssp TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred CCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence 8899999999999999 4579999999983
No 8
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=8.9e-45 Score=287.10 Aligned_cols=254 Identities=20% Similarity=0.234 Sum_probs=194.7
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhh--------------------
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEM-------------------- 62 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~-------------------- 62 (280)
.+|+.||+.|+.+.|+.|++.+.+.. ...+..|.||||+|+..|+.+++++|++++++.
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gadvn-~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 105 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSV 105 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccc
Confidence 46999999999999999999987652 222456999999999999999999999987641
Q ss_pred ------------hhcccccCcchHHHHHhcCcHHHHHHHHhcChhhh---------hhhhhcCCCHHHHHHhcCcHHHHH
Q 041966 63 ------------LAATNEKLETPVHEACREGRLHIVRLFLETDSWVV---------HKMNRNKESALYVACERGRLDVVK 121 (280)
Q Consensus 63 ------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------~~~~~~~~t~l~~a~~~~~~~~~~ 121 (280)
++..|..|.||||+|+..|+.+++++|++.|++.. ...+..|.||||+|+..|+.++++
T Consensus 106 ~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~ 185 (337)
T 4g8k_A 106 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 185 (337)
T ss_dssp HHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHH
T ss_pred hhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHH
Confidence 34566777888888888888888888888776321 233456778888888888888888
Q ss_pred HHHcCCCccccccccCCchHHHHHHhcCC----HHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhc-CC
Q 041966 122 QLLNYPSVSLLEMDDGLTTSLHVAASAGH----LEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM-DP 196 (280)
Q Consensus 122 ~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~-~~ 196 (280)
+|++..+.+.+..+..|.++++.++..+. ..++++|+++|++++ ..+..|.||||+|+..++.+++++|+.. |+
T Consensus 186 ~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n-~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~ 264 (337)
T 4g8k_A 186 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHI 264 (337)
T ss_dssp HHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC
T ss_pred HHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC
Confidence 88865556666777777788877665443 357778888888877 6777888888888888888888888875 56
Q ss_pred CCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhccc
Q 041966 197 DLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 197 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 265 (280)
+++. .+..|+||||+|+..|+.+++++|++.|+ +++ ..+||++|++.++.+++++|+++|++
T Consensus 265 ~vn~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA-d~n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~ 326 (337)
T 4g8k_A 265 EIND-TDSDGKTALLLAVELKLKKIAELLCKRGA-STD-----CGDLVMTARRNYDHSLVKVLLSHGAK 326 (337)
T ss_dssp CTTC-BCTTSCBHHHHHHHTTCHHHHHHHHTTSC-SST-----TCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccC-cCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCC-----CCCHHHHHHHcCCHHHHHHHHHCcCC
Confidence 6554 77888888888888888888888888773 333 35688888888888888888888554
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-45 Score=282.83 Aligned_cols=238 Identities=20% Similarity=0.234 Sum_probs=191.0
Q ss_pred CCCCcchhHHHHhcCCHHHHHHHHHhChh----------hhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhh
Q 041966 33 PGSLNTVLHLAARYGHEELALEILKLCPE----------MLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNR 102 (280)
Q Consensus 33 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 102 (280)
...|.|+||+|+..|+.+.+..++..++. ..+..+..|+||||+|+..|+.+++++|++.+. .++..+.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-CSCEECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCC
Confidence 46789999999999998888887665432 256788899999999999999999999999998 5677889
Q ss_pred cCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhc
Q 041966 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSK 182 (280)
Q Consensus 103 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~ 182 (280)
.|.||||+|+..|+.+++++|++.+ ...+..+..|.||||+|+..++.+++++|++.|+++. .+..|.||||+|+..
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARR 167 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHc
Confidence 9999999999999999999999984 5566778889999999999999999999999999986 345699999999999
Q ss_pred CcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 183 GHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 183 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
++.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++ .+..|.||||+|+..++.+++++|++.
T Consensus 168 g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 168 GHVECVNSLIAYGGNIDH-KISHLGTPLYLACENQQRACVKKLLESG-ADVN-QGKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp TCHHHHHHHHHTTCCTTC-CBTTTBCHHHHHHHTTCHHHHHHHHHTT-CCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHCC-CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 999999999999999876 8999999999999999999999999988 4555 488899999999999999999999998
Q ss_pred cccccccCCCCCCCCCCC
Q 041966 263 LNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 263 ~~~~~~~~~~d~~g~t~L 280 (280)
|++++.+|.+|+|||
T Consensus 245 ---gad~~~~d~~g~t~l 259 (285)
T 3d9h_A 245 ---GADTQAKNAEGKRPV 259 (285)
T ss_dssp ---TCCTTCCCTTSCCGG
T ss_pred ---CCCCCCcCCCCCCHH
Confidence 556999999999997
No 10
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.6e-45 Score=281.01 Aligned_cols=238 Identities=25% Similarity=0.310 Sum_probs=216.4
Q ss_pred CCcchhHHHHhcCCHHHHHHHHHhChhhhhcc-cccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHh
Q 041966 35 SLNTVLHLAARYGHEELALEILKLCPEMLAAT-NEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACE 113 (280)
Q Consensus 35 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 113 (280)
.|.||||.|++.|+.+++++|++.+++ ++.. +..|.||||+|+..|+.+++++|++.++ ..+..+..|.||||+|+.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHH
Confidence 467999999999999999999999988 5555 8889999999999999999999999998 566778899999999999
Q ss_pred cCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCC---------CCCCCcHHHHHHhcCc
Q 041966 114 RGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKK---------DPNGRTPLTLCSSKGH 184 (280)
Q Consensus 114 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~---------~~~g~~~l~~a~~~~~ 184 (280)
.|+.+++++|++++. .....+..|.||||+|+..++.+++++|++.|+++.... +..|.||||+|+..++
T Consensus 82 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 160 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160 (285)
T ss_dssp HTCHHHHHHHHHTTC-CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHcCC-CCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence 999999999999854 556677889999999999999999999999999987321 7789999999999999
Q ss_pred HHHHHHHHhc-CCCCCCCCCCCCCChhhhHhhcCC----hhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHH
Q 041966 185 LEITRELLKM-DPDLSSSQDNEGRTPLHWATIKGR----VNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259 (280)
Q Consensus 185 ~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 259 (280)
.+++++|++. |++++. .+..|.||||+|+..++ .+++++|++.+ .+++.++..|.||||+|++.++.+++++|
T Consensus 161 ~~~v~~Ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 161 VEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp HHHHHHHHHTSCCCTTC-CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCc-cCCCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999987 888765 88999999999999999 88999999988 67788999999999999999999999999
Q ss_pred HH-hcccccccCCCCCCCCCCC
Q 041966 260 ME-TLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 260 l~-~~~~~~~~~~~d~~g~t~L 280 (280)
++ . +++++.+|..|+|||
T Consensus 239 l~~~---g~~~~~~~~~g~t~l 257 (285)
T 1wdy_A 239 LEQE---HIEINDTDSDGKTAL 257 (285)
T ss_dssp HHSS---SCCTTCCCTTSCCHH
T ss_pred Hhcc---CCCccccCCCCCcHH
Confidence 99 5 556999999999996
No 11
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.7e-45 Score=294.18 Aligned_cols=229 Identities=18% Similarity=0.208 Sum_probs=207.2
Q ss_pred hhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHH
Q 041966 30 QTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALY 109 (280)
Q Consensus 30 ~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~ 109 (280)
...+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.++|++|++.++ ...+..|.||||
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~g~t~L~ 89 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIH 89 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC---CCCCBTTBCHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC---CccccCCCCHHH
Confidence 45577889999999999999999999999987 89999999999999999999999999999998 233458999999
Q ss_pred HHHhcCcHHHHHHHHcC----CCcccc----------------ccccCCchHHHHHHhcC--CHHHHHHHHHhCCCCccC
Q 041966 110 VACERGRLDVVKQLLNY----PSVSLL----------------EMDDGLTTSLHVAASAG--HLEIVNELLEARPEFTWK 167 (280)
Q Consensus 110 ~a~~~~~~~~~~~Ll~~----~~~~~~----------------~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~ 167 (280)
+|+..|+.+++++|++. +..... ..+..|.||||+|+..| +.+++++|++.|++++ .
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~ 168 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-A 168 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-C
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-c
Confidence 99999999999999987 332211 26678899999999999 9999999999999998 8
Q ss_pred CCCCCCcHHHHHHhcCcHHHHHHHHhcCCC-----CCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCc
Q 041966 168 KDPNGRTPLTLCSSKGHLEITRELLKMDPD-----LSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGET 242 (280)
Q Consensus 168 ~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 242 (280)
.+..|.||||+|+..++.+++++|+++|++ ++. .+..|.||||+|+..|+.+++++|++.+ .+++.+|..|.|
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~t 246 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY-ANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTV 246 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC-CCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCC
Confidence 899999999999999999999999999998 655 7889999999999999999999999988 678899999999
Q ss_pred hHHHHHhcCcHHHHHHHHHhccc
Q 041966 243 VLHLGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 243 ~l~~a~~~~~~~~~~~Ll~~~~~ 265 (280)
|||+|+..|+.+++++|++.++.
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhChHHHHHHHHHcCCc
Confidence 99999999999999999999754
No 12
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.3e-45 Score=273.23 Aligned_cols=228 Identities=23% Similarity=0.332 Sum_probs=212.9
Q ss_pred hcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHH
Q 041966 31 TVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYV 110 (280)
Q Consensus 31 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~ 110 (280)
..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.++ ..+..+..|.||||+
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHL 83 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CCCCCCTTSCCHHHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCCCCCCcHHHH
Confidence 4578899999999999999999999999988 78899999999999999999999999999998 566778899999999
Q ss_pred HHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHH
Q 041966 111 ACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRE 190 (280)
Q Consensus 111 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ 190 (280)
|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+++++
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHCCCHHHHHH
Confidence 9999999999999999877788888999999999999999999999999999998 789999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 191 LLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 191 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.|||++|+..++.+.+..|++..
T Consensus 163 Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 163 LLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp HHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCCCC-cCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999876 7899999999999999999999999988 677889999999999999999998877777654
No 13
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.4e-44 Score=269.10 Aligned_cols=227 Identities=25% Similarity=0.236 Sum_probs=210.5
Q ss_pred CCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHH
Q 041966 33 PGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVAC 112 (280)
Q Consensus 33 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~ 112 (280)
+..+.+|||.|+..|+.+.++++++.++...+..+..|.||||+|+..|+.+++++|++.+. .++..+..|.||||+|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC-CCCCcCCCCCCHHHHHH
Confidence 34678999999999999999999999988888999999999999999999999999999988 56677889999999999
Q ss_pred hcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHH
Q 041966 113 ERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192 (280)
Q Consensus 113 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll 192 (280)
..|+.+++++|++++. .....+..|.||||+|+..++.+++++|++.|.+++ ..+..|.||||+|+..++.+++++|+
T Consensus 82 ~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 82 SAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 9999999999999854 556677889999999999999999999999999998 78899999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcc
Q 041966 193 KMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264 (280)
Q Consensus 193 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 264 (280)
++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.||+++|+..++.+++++|.+.++
T Consensus 160 ~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 160 FYKASTNI-QDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp HTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCccc-cCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 99999876 7899999999999999999999999987 5778899999999999999999999999999854
No 14
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.6e-45 Score=275.11 Aligned_cols=230 Identities=22% Similarity=0.302 Sum_probs=203.7
Q ss_pred hcCCCCcchhHHHHhcCCHHHHHHHHHh---ChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCH
Q 041966 31 TVPGSLNTVLHLAARYGHEELALEILKL---CPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESA 107 (280)
Q Consensus 31 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 107 (280)
..+..|.||||+|+..|+.+++++|++. .+..++..+..|.||||+|+..|+.+++++|++.|+ ..+..+..|.||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~ 82 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-SPMALDRHGQTA 82 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCH
Confidence 4578999999999999999999999983 333478899999999999999999999999999998 566778899999
Q ss_pred HHHHHhcCcHHHHHHHHcCCCc---cccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCC-CCCCcHHHHHHhcC
Q 041966 108 LYVACERGRLDVVKQLLNYPSV---SLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD-PNGRTPLTLCSSKG 183 (280)
Q Consensus 108 l~~a~~~~~~~~~~~Ll~~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~~~l~~a~~~~ 183 (280)
||+|+..++.+++++|++.+.. .....+..|.||||+|+..++.+++++|++.|++++ ..+ ..|.||||+|+..+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID-AVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-cccccCCCcHHHHHHHcC
Confidence 9999999999999999998652 566677889999999999999999999999999998 455 88999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
+.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.|||++|+..++.++++.|.+.+
T Consensus 162 ~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 162 SLSMVQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp CHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred CHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 99999999999999876 8899999999999999999999999988 677889999999999999999999999998874
Q ss_pred c
Q 041966 264 N 264 (280)
Q Consensus 264 ~ 264 (280)
+
T Consensus 240 a 240 (241)
T 1k1a_A 240 A 240 (241)
T ss_dssp -
T ss_pred C
Confidence 3
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-45 Score=293.72 Aligned_cols=254 Identities=19% Similarity=0.239 Sum_probs=218.2
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcC-CCCcchhHHHHhcCCHHHHHHHH--------HhChhhhhcccccCcch
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVP-GSLNTVLHLAARYGHEELALEIL--------KLCPEMLAATNEKLETP 73 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-~~g~~~L~~A~~~g~~~~~~~ll--------~~~~~~~~~~~~~g~t~ 73 (280)
.+|+.|+..+ .+.++.++.... ...+ ..|.||||+|+..|+.+++++|+ +.+.+ ++..|..|.||
T Consensus 96 t~L~~Aa~~~-~~~~~~L~~~~~----n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~Tp 169 (373)
T 2fo1_E 96 IKLHTEAAGS-YAITEPITRESV----NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTP 169 (373)
T ss_dssp CHHHHHHHSS-SCCCSCCSTTTT----TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCH
T ss_pred cHHHHHhcCC-chHHHHhccccc----cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCH
Confidence 4688888854 577776665322 2334 68999999999999998888776 56666 78999999999
Q ss_pred HHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCC--ccccccccCCchHHHHHHhcC--
Q 041966 74 VHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPS--VSLLEMDDGLTTSLHVAASAG-- 149 (280)
Q Consensus 74 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~--~~~~~~~~~~~~~l~~a~~~~-- 149 (280)
||+|+..|+.++|++|++.|+ +.+..+..|.||||+|+..|+.+++++|++.+. ......+..|.||||+|+..+
T Consensus 170 L~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~ 248 (373)
T 2fo1_E 170 LMLAVLARRRRLVAYLMKAGA-DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred HHHHHHcChHHHHHHHHHCCC-CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCc
Confidence 999999999999999999998 566778899999999999999999999999753 466677888999999999988
Q ss_pred -CHHHHHHHHHhCCCCcc-------CCCCCCCcHHHHHHhcCcHHHHHHHHhcC-CCCCCCCCCCCCChhhhHhhcCChh
Q 041966 150 -HLEIVNELLEARPEFTW-------KKDPNGRTPLTLCSSKGHLEITRELLKMD-PDLSSSQDNEGRTPLHWATIKGRVN 220 (280)
Q Consensus 150 -~~~~~~~ll~~~~~~~~-------~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~~~ 220 (280)
+.+++++|++.|++++. ..+..|.||||+|+..++.+++++|++++ ++++. .+..|.||||+|+..|+.+
T Consensus 249 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~-~d~~g~TpL~~A~~~g~~~ 327 (373)
T 2fo1_E 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-QDEDGKTPIMLAAQEGRIE 327 (373)
T ss_dssp THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC-CCTTCCCHHHHHHHHTCHH
T ss_pred chHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC-cCCCCCCHHHHHHHcCCHH
Confidence 89999999999998863 25678999999999999999999999886 77654 8999999999999999999
Q ss_pred hHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhccc
Q 041966 221 IIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 221 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 265 (280)
++++|++.+ .+++.+|..|.|||++|+..|+.+++++|++.+++
T Consensus 328 iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 328 VVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 999999987 67788999999999999999999999999998654
No 16
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.5e-44 Score=277.78 Aligned_cols=244 Identities=21% Similarity=0.178 Sum_probs=189.6
Q ss_pred hcCCCCcchhHHHHhcCCHHHHHHHHHhChh--hhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHH
Q 041966 31 TVPGSLNTVLHLAARYGHEELALEILKLCPE--MLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESAL 108 (280)
Q Consensus 31 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l 108 (280)
..+..|.||||+|+..|+.+++++|++.+++ .++..+..|.||||+|+..|+.+++++|++.|+ .++..+..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL 82 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA-GVLVAERGGHTAL 82 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSSCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHH
Confidence 4578999999999999999999999998775 378889999999999999999999999999998 5667788999999
Q ss_pred HHHHhcCcHHHHHHHHcCCCcccc------------ccccCCchHHHHHHhcCCH-HHHHHHHHhCCCCccCCCCCCCcH
Q 041966 109 YVACERGRLDVVKQLLNYPSVSLL------------EMDDGLTTSLHVAASAGHL-EIVNELLEARPEFTWKKDPNGRTP 175 (280)
Q Consensus 109 ~~a~~~~~~~~~~~Ll~~~~~~~~------------~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~g~~~ 175 (280)
|+|+..|+.+++++|++.+..... .....+.++++.+...+.. .....+...+.+++ ..+..|.||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~t~ 161 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTP 161 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTT-CCCTTSCCH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCC-CcCCCCcCH
Confidence 999999999999999997654221 1122334555555544432 33344444555665 788999999
Q ss_pred HHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHH
Q 041966 176 LTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEA 255 (280)
Q Consensus 176 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 255 (280)
||+|+..++.+++++|+++|++++...+..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..++.++
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHH
Confidence 999999999999999999999988744456999999999999999999999987 6788899999999999999999999
Q ss_pred HHHHHHhcccccccCCCCCCCCCCC
Q 041966 256 VKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 256 ~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
+++|+++ |++++.+|..|.|||
T Consensus 241 v~~Ll~~---ga~~~~~~~~g~tpl 262 (282)
T 1oy3_D 241 ARLLRAH---GAPEPEDGGDKLSPC 262 (282)
T ss_dssp HHHHHHT---TCCCCCCC-------
T ss_pred HHHHHHc---CCCcCcCCCcccccc
Confidence 9999999 555999999999997
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=270.22 Aligned_cols=248 Identities=21% Similarity=0.276 Sum_probs=220.8
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGR 82 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 82 (280)
.+|+.|+..|+.+.++.+++.+.+. ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 5 SPMHEAAIHGHQLSLRNLISQGWAV--NIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence 5899999999999999999987664 45678999999999999999999999999988 89999999999999999999
Q ss_pred HHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCC
Q 041966 83 LHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARP 162 (280)
Q Consensus 83 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 162 (280)
.+++++|++.+++.. .+..|.||||+|+..|+.+++++|++++ .+.+..+..|.||||+|+..++.+++++|++.|+
T Consensus 82 ~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 158 (261)
T 2xai_A 82 WDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158 (261)
T ss_dssp HHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 999999999998443 2456999999999999999999999985 4566678889999999999999999999999999
Q ss_pred CCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhccc-------chhh
Q 041966 163 EFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLE-------SSEI 235 (280)
Q Consensus 163 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-------~~~~ 235 (280)
+++ .+..|.||||+|+..++.+++++|+++|++++. .|..|.||+|+|+.. .+++++|++.+.. ....
T Consensus 159 ~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~ 233 (261)
T 2xai_A 159 DVN--QGKGQDSPLHAVARTASEELACLLMDFGADTQA-KNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRI 233 (261)
T ss_dssp CTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHH
T ss_pred CCC--CCCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHH
Confidence 997 488999999999999999999999999999875 899999999999954 4588899987642 3567
Q ss_pred hhhcCCchHHHHHhcCcHHHHHHHHH
Q 041966 236 RTLHGETVLHLGVKNNQYEAVKHLME 261 (280)
Q Consensus 236 ~~~~g~t~l~~a~~~~~~~~~~~Ll~ 261 (280)
++..|.|++|.|.+...++.++.++.
T Consensus 234 r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 234 RKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp HTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred HHHhchhccccCcccCCcHHHHHHHh
Confidence 88999999999999988888777664
No 18
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-45 Score=291.57 Aligned_cols=240 Identities=17% Similarity=0.212 Sum_probs=209.3
Q ss_pred hcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhccc-ccCcchHHHHHhcCcHHHHHHHH--------hcChhhhhhhh
Q 041966 31 TVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATN-EKLETPVHEACREGRLHIVRLFL--------ETDSWVVHKMN 101 (280)
Q Consensus 31 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll--------~~~~~~~~~~~ 101 (280)
..+..|.||||+|+..+. +++++|+.. .++..| ..|.||||+|+..|+.+++++|+ +.|+ +++..|
T Consensus 89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga-~vn~~d 163 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAMD 163 (373)
T ss_dssp -----CCCHHHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-CTTCCC
T ss_pred CCCCCCccHHHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC-CCcCCC
Confidence 446789999999999654 777777652 366677 78999999999999999888876 6677 667788
Q ss_pred hcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhC---CCCccCCCCCCCcHHHH
Q 041966 102 RNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEAR---PEFTWKKDPNGRTPLTL 178 (280)
Q Consensus 102 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~g~~~l~~ 178 (280)
..|.||||+|+..|+.+++++|++.+. .....+..|.||||+|+..|+.+++++|++.+ .+++ ..+..|.||||+
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L~~ 241 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGA-DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALMI 241 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHCCC-CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHHHH
Confidence 999999999999999999999999854 45567788999999999999999999999987 6776 789999999999
Q ss_pred HHhcC---cHHHHHHHHhcCCCCCC-------CCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHH
Q 041966 179 CSSKG---HLEITRELLKMDPDLSS-------SQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGV 248 (280)
Q Consensus 179 a~~~~---~~~~~~~Ll~~~~~~~~-------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~ 248 (280)
|+..+ +.+++++|+++|++++. ..+..|.||||+|+..|+.+++++|++.++.+++.+|..|.||||+|+
T Consensus 242 A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~ 321 (373)
T 2fo1_E 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA 321 (373)
T ss_dssp HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred HHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence 99988 89999999999998764 256789999999999999999999999987899999999999999999
Q ss_pred hcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 249 KNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 249 ~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
..|+.+++++|+++ |++++.+|..|+|||
T Consensus 322 ~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l 350 (373)
T 2fo1_E 322 QEGRIEVVMYLIQQ---GASVEAVDATDHTAR 350 (373)
T ss_dssp HHTCHHHHHHHHHT---TCCSSCCCSSSCCHH
T ss_pred HcCCHHHHHHHHHc---CCCccCCCCCCCCHH
Confidence 99999999999998 556999999999986
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.4e-43 Score=281.72 Aligned_cols=254 Identities=17% Similarity=0.174 Sum_probs=223.8
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGR 82 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 82 (280)
.+|+.|+..|+.+.++.|++.+.+. ...+..|.||||+|+..|+.+++++|++.+.+ ..+..|.||||+|+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC---CCCBTTBCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCCHHHHHHHcCC
Confidence 4799999999999999999987664 45678999999999999999999999999984 334579999999999999
Q ss_pred HHHHHHHHhc----Chhhhhh-----------------hhhcCCCHHHHHHhcC--cHHHHHHHHcCCCccccccccCCc
Q 041966 83 LHIVRLFLET----DSWVVHK-----------------MNRNKESALYVACERG--RLDVVKQLLNYPSVSLLEMDDGLT 139 (280)
Q Consensus 83 ~~~v~~Ll~~----~~~~~~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~ 139 (280)
.+++++|++. +. ..+. .+..|.||||+|+..| +.+++++|++.+ .+.+..+..|.
T Consensus 97 ~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~~d~~g~ 174 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQ-MPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADE 174 (364)
T ss_dssp HHHHHHHHHHHHHHTC-CHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTCCCTTSC
T ss_pred HHHHHHHHHhccccCC-CHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCcccCCCCC
Confidence 9999999998 54 3333 6778999999999999 999999999984 45667788999
Q ss_pred hHHHHHHhcCCHHHHHHHHHhCCC-----CccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHh
Q 041966 140 TSLHVAASAGHLEIVNELLEARPE-----FTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214 (280)
Q Consensus 140 ~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~ 214 (280)
||||+|+..|+.+++++|++.|++ ++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+
T Consensus 175 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM-EDNEHTVPLYLSV 252 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH
Confidence 999999999999999999999998 76 7889999999999999999999999999999875 8999999999999
Q ss_pred hcCChhhHHHHHHhcccc-----------hhhhhhcCCchHHHHHhcCcHHHHHHHHHhccc
Q 041966 215 IKGRVNIIDEILSVNLES-----------SEIRTLHGETVLHLGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 215 ~~~~~~~~~~Ll~~~~~~-----------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 265 (280)
..|+.+++++|++.+... ....+..+++|++.|+..++.+.+..|+..+.+
T Consensus 253 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~ 314 (364)
T 3ljn_A 253 RAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314 (364)
T ss_dssp HTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHH
Confidence 999999999999987332 112567889999999999988888888776543
No 20
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=6.5e-43 Score=261.63 Aligned_cols=222 Identities=21% Similarity=0.259 Sum_probs=198.3
Q ss_pred CcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcC--hhhhhhhhhcCCCHHHHHHh
Q 041966 36 LNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETD--SWVVHKMNRNKESALYVACE 113 (280)
Q Consensus 36 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~l~~a~~ 113 (280)
|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.+ .+.....+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 7899999999999999999999999977779999999999999999999999999998 43333367899999999999
Q ss_pred cCcHHHHHHHHcCC-CccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHH
Q 041966 114 RGRLDVVKQLLNYP-SVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192 (280)
Q Consensus 114 ~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll 192 (280)
.|+.+++++|++.+ .......+..|.||||+|+..++.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999986 25566778889999999999999999999999999998 88999999999999999999999999
Q ss_pred hcC-CCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 193 KMD-PDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 193 ~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
+.| ++++. .+..|.||||+|+..++.+++++|++..+.+++.+|..|.||+++|++. ++.++|+++
T Consensus 161 ~~g~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 161 GLGKSAVNW-QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTTCCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred hcCcccccC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 999 77654 8999999999999999999999999444478889999999999999765 566777654
No 21
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=275.41 Aligned_cols=238 Identities=23% Similarity=0.282 Sum_probs=168.3
Q ss_pred cCCCCcchhHHHHhcCCHHHHHHHHHhChhh-------hhcccccCcchHHHHHhcCcH-HHHHHHHhcChhhhhhhhhc
Q 041966 32 VPGSLNTVLHLAARYGHEELALEILKLCPEM-------LAATNEKLETPVHEACREGRL-HIVRLFLETDSWVVHKMNRN 103 (280)
Q Consensus 32 ~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~-------~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~ 103 (280)
.|..+.++|+.|+..|+.++|++|++.+... ++..+..|.|||+.|+..+.. .++++|++.|+ +++..|..
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga-dvn~~d~~ 85 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL-GVNVTSQD 85 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCC-CTTCCCTT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC-CCCCcCCC
Confidence 4556678999999999999999999987653 456677889999999988775 47889999998 56778899
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q 041966 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~ 183 (280)
|.||||+|+..|+.+++++|++.+. +....+..|.||++.|+..++.+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGA-NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLIYACSGG 163 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCC-CcCccCCCCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCC
Confidence 9999999999999999999999754 455667788999999999999999999999999998 78999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCc-HHHHHHHHHh
Q 041966 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQ-YEAVKHLMET 262 (280)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~ 262 (280)
+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.| .+++.+|..|+||||+|+++++ .+++++|...
T Consensus 164 ~~~~v~~Ll~~gadvn~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~ 241 (269)
T 4b93_B 164 HHELVALLLQHGASINA-SNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC 241 (269)
T ss_dssp CGGGHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCHHHHHTTC----
T ss_pred CHHHHHHHHHCCCCCCc-cccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHh
Confidence 99999999999999876 8889999999999999999999999987 6788899999999999988876 4555555555
Q ss_pred cccccccCCCCC
Q 041966 263 LNTTKLVNTPDN 274 (280)
Q Consensus 263 ~~~~~~~~~~d~ 274 (280)
++...+++..|.
T Consensus 242 ~~~~~~~~~td~ 253 (269)
T 4b93_B 242 VASLDDVAETDR 253 (269)
T ss_dssp ------------
T ss_pred chhhhhccCCCh
Confidence 444333444443
No 22
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=260.59 Aligned_cols=230 Identities=23% Similarity=0.358 Sum_probs=209.0
Q ss_pred cCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHH
Q 041966 32 VPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVA 111 (280)
Q Consensus 32 ~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a 111 (280)
.+..|.++|+.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+.......+..|.|||++|
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 467889999999999999999999999987 7889999999999999999999999999999976666667799999999
Q ss_pred HhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCc-HHHHHH
Q 041966 112 CERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGH-LEITRE 190 (280)
Q Consensus 112 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~-~~~~~~ 190 (280)
+..|+.+++++|++.+. .....+..|.||||.|+..++.+++++|++.|+++. ..+..|.||||+|+..+. .+++++
T Consensus 84 ~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~ 161 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGA-DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTRL 161 (240)
T ss_dssp HHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred HHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHHHH
Confidence 99999999999999844 455667888999999999999999999999999998 889999999999996655 899999
Q ss_pred HHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhccc
Q 041966 191 LLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 191 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 265 (280)
|++.|++++......|.||||+|+..++.+++++|++.+ .+++.++..|.|||++|++.++.+++++|++.++.
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 999999987744348999999999999999999999998 67788999999999999999999999999999765
No 23
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.7e-42 Score=257.56 Aligned_cols=206 Identities=22% Similarity=0.279 Sum_probs=189.6
Q ss_pred CcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCC--CccccccccCCchHHHHHHh
Q 041966 70 LETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYP--SVSLLEMDDGLTTSLHVAAS 147 (280)
Q Consensus 70 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~~~~~l~~a~~ 147 (280)
|+||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.+ .......+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6899999999999999999999999777778999999999999999999999999987 33333377889999999999
Q ss_pred cCCHHHHHHHHHhC--CCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHH
Q 041966 148 AGHLEIVNELLEAR--PEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEI 225 (280)
Q Consensus 148 ~~~~~~~~~ll~~~--~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 225 (280)
.++.+++++|++.| ++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999998 7776 7888999999999999999999999999999876 889999999999999999999999
Q ss_pred HHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHH-HhcccccccCCCCCCCCCCC
Q 041966 226 LSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLM-ETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 226 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~d~~g~t~L 280 (280)
++.+..+++.+|..|.||||+|+..++.+++++|+ +. |++++.+|..|+|||
T Consensus 160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l 212 (228)
T 2dzn_A 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAE 212 (228)
T ss_dssp HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGG
T ss_pred HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHH
Confidence 99997788899999999999999999999999999 77 556999999999996
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6e-42 Score=256.89 Aligned_cols=223 Identities=22% Similarity=0.263 Sum_probs=205.4
Q ss_pred ChHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcC
Q 041966 2 DERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREG 81 (280)
Q Consensus 2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~ 81 (280)
+.+|+.|++.|+.+.++.+++.++... ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHcC
Confidence 357999999999999999999887653 45578999999999999999999999999887 7889999999999999999
Q ss_pred cHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhC
Q 041966 82 RLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEAR 161 (280)
Q Consensus 82 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~ 161 (280)
+.+++++|++.++ ..+..+..|.||||+|+..++.+++++|++.+. .....+..|.||||+|+..++.+++++|++.|
T Consensus 85 ~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 162 (231)
T 3aji_A 85 XDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA-NPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162 (231)
T ss_dssp CHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence 9999999999998 566778899999999999999999999999854 45666788999999999999999999999999
Q ss_pred CCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcc
Q 041966 162 PEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230 (280)
Q Consensus 162 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 230 (280)
++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||+++|+..++.+++++|.+.++
T Consensus 163 ~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 163 ASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI-ENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp CCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCcc-ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 9998 7899999999999999999999999999999865 89999999999999999999999998774
No 25
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.6e-42 Score=258.66 Aligned_cols=215 Identities=18% Similarity=0.181 Sum_probs=165.9
Q ss_pred CCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcC
Q 041966 47 GHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNY 126 (280)
Q Consensus 47 g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 126 (280)
|+.+++++|++.+++.....|..|.||||+|+..|+.+++++|++.++ ..+..+..|.||||+|+..|+.+++++|++.
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 456667777777776444556777777777777777777777777776 4555667777777777777777777777777
Q ss_pred CCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCC
Q 041966 127 PSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEG 206 (280)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g 206 (280)
+.......+..+.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g 158 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNRE 158 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCC
Confidence 665666667777888888888888888888888888877 6777888888888888888888888888888765 67788
Q ss_pred CChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhccc
Q 041966 207 RTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 207 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 265 (280)
.||||+|+..++.+++++|++.+ .+++.++..|.||+++|++.++.+++++|++.+..
T Consensus 159 ~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 159 ETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred cCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 88888888888888888888877 46677788888888888888888888888888653
No 26
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.1e-42 Score=260.12 Aligned_cols=223 Identities=18% Similarity=0.238 Sum_probs=181.7
Q ss_pred hHHHHHHHcC-------------ChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhccccc
Q 041966 3 ERLFETVLKG-------------ETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEK 69 (280)
Q Consensus 3 ~~l~~a~~~g-------------~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~ 69 (280)
.+|+.|+..| +.+.++.+++.+.... ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..
T Consensus 12 tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~ 89 (253)
T 1yyh_A 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNM 89 (253)
T ss_dssp -----------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred cHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence 4788899877 8999999999988753 34578999999999999999999999999988 7899999
Q ss_pred CcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcC
Q 041966 70 LETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG 149 (280)
Q Consensus 70 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~ 149 (280)
|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..++.+++++|++.+ ...+..+..|.||||+|+..+
T Consensus 90 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~ 168 (253)
T 1yyh_A 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVN 168 (253)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence 9999999999999999999999998777888999999999999999999999999974 456677888999999999999
Q ss_pred CHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhc
Q 041966 150 HLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229 (280)
Q Consensus 150 ~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 229 (280)
+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||+++|+..|+.+++++|....
T Consensus 169 ~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 169 NVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred CHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-cccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999999999998 7899999999999999999999999999999865 8999999999999999999999998866
Q ss_pred c
Q 041966 230 L 230 (280)
Q Consensus 230 ~ 230 (280)
.
T Consensus 247 ~ 247 (253)
T 1yyh_A 247 H 247 (253)
T ss_dssp -
T ss_pred h
Confidence 4
No 27
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.9e-41 Score=255.16 Aligned_cols=210 Identities=26% Similarity=0.466 Sum_probs=193.0
Q ss_pred hhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHH
Q 041966 63 LAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSL 142 (280)
Q Consensus 63 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l 142 (280)
++..+..|.||||+|+..|+.+++++|++.|. ..+..+..|.||||+|+..|+.+++++|++.+. .....+..|.|||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L 81 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCL 81 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CCCCCCTTSCCHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCCCCCCcHH
Confidence 56788999999999999999999999999998 566778899999999999999999999999854 4566678889999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhh
Q 041966 143 HVAASAGHLEIVNELLEAR-PEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNI 221 (280)
Q Consensus 143 ~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 221 (280)
|+|+..++.+++++|++.+ .+++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..|+.++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVN-CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHCCCHHH
Confidence 9999999999999999999 5555 7889999999999999999999999999999865 88999999999999999999
Q ss_pred HHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 222 IDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 222 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
+++|++.+ .+++.+|..|.||||+|++.++.+++++|+++ |++++.+|..|+|||
T Consensus 160 ~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l 214 (237)
T 3b7b_A 160 AEILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPL 214 (237)
T ss_dssp HHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHH
T ss_pred HHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCCCCccCCCCCCHH
Confidence 99999988 67788899999999999999999999999998 556999999999996
No 28
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.2e-41 Score=267.03 Aligned_cols=250 Identities=23% Similarity=0.277 Sum_probs=219.2
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGR 82 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 82 (280)
.+|+.|+..|+.+.++.|++.+.+. ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus 60 t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 136 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNR 136 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence 5899999999999999999987764 45678999999999999999999999999988 78999999999999999999
Q ss_pred HHHHHHHHhcChhhhhhhhhcCCCHHHHH---------------------HhcCcHHHHHHHHcCCCccccccccCCchH
Q 041966 83 LHIVRLFLETDSWVVHKMNRNKESALYVA---------------------CERGRLDVVKQLLNYPSVSLLEMDDGLTTS 141 (280)
Q Consensus 83 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a---------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 141 (280)
.+++++|++.|+ .....+..|.+|+++| +..++.+.+..++.... .....+..+.||
T Consensus 137 ~~~v~~Ll~~g~-~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~ 214 (351)
T 3utm_A 137 VEVCSLLLSHGA-DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETA 214 (351)
T ss_dssp HHHHHHHHHTTC-CTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCH
T ss_pred HHHHHHHHHcCC-CCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCH
Confidence 999999999998 5666788888887765 44556666666666543 333456778899
Q ss_pred HHHHHhc---CCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCC
Q 041966 142 LHVAASA---GHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGR 218 (280)
Q Consensus 142 l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~ 218 (280)
||+|+.. +..+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..|+
T Consensus 215 L~~A~~~~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~-~d~~g~t~L~~A~~~~~ 292 (351)
T 3utm_A 215 LHCAVASLHPKRKQVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA-LDSLGQTALHRAALAGH 292 (351)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHhCccHHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCc
Confidence 9999999 55899999999999998 8899999999999999999999999999999876 89999999999999999
Q ss_pred hhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcc
Q 041966 219 VNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264 (280)
Q Consensus 219 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 264 (280)
.+++++|++.+ .+++.+|..|.||+++| ..+++++|.+...
T Consensus 293 ~~~v~~Ll~~g-ad~~~~~~~g~tal~~a----~~~~~~~l~~~~~ 333 (351)
T 3utm_A 293 LQTCRLLLSYG-SDPSIISLQGFTAAQMG----NEAVQQILSESTP 333 (351)
T ss_dssp HHHHHHHHHTT-CCTTCCCTTSCCHHHHS----CHHHHHHHHHC--
T ss_pred HHHHHHHHHcC-CCCCCcCCCCCChhhhh----hHHHHHHHHhccc
Confidence 99999999998 57889999999999998 6788899988754
No 29
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4e-41 Score=254.03 Aligned_cols=211 Identities=19% Similarity=0.269 Sum_probs=188.0
Q ss_pred hhcccccCcchHHHHHhcCcHHHHHHHHh----cChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCC
Q 041966 63 LAATNEKLETPVHEACREGRLHIVRLFLE----TDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGL 138 (280)
Q Consensus 63 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 138 (280)
++..|..|.||||+|+..|+.+++++|++ .+. ..+..+..|.||||+|+..|+.+++++|++.+. .....+..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g 79 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR-ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-SPMALDRHG 79 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTS
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCC
Confidence 45678999999999999999999999997 444 667778899999999999999999999999854 455667889
Q ss_pred chHHHHHHhcCCHHHHHHHHHhCC----CCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHh
Q 041966 139 TTSLHVAASAGHLEIVNELLEARP----EFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214 (280)
Q Consensus 139 ~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~ 214 (280)
.||||+|+..++.+++++|++.++ ++. ..+..|.||||+|+..++.+++++|+++|++++...+..|.||||+|+
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence 999999999999999999999987 555 678899999999999999999999999999987743378999999999
Q ss_pred hcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 215 IKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 215 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
..++.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|++. |++++.+|..|+|||
T Consensus 159 ~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl 220 (241)
T 1k1a_A 159 ENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPL 220 (241)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTT
T ss_pred HcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCcCCCCCCHH
Confidence 999999999999987 67888999999999999999999999999998 555999999999997
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=5.1e-42 Score=264.61 Aligned_cols=239 Identities=15% Similarity=0.133 Sum_probs=210.7
Q ss_pred HHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHH
Q 041966 8 TVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVR 87 (280)
Q Consensus 8 a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 87 (280)
+++..+.+.+..++.+.. ....+..|.||||+|+..|+.+++++|++.+.+ ++.. +|.||||+|+..|+.++++
T Consensus 6 ~i~~~~~~~v~~lL~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp TGGGCCHHHHHHHHHSTT---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHH
T ss_pred HHHhcCHHHHHHHHHhCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHH
Confidence 467788888888888763 246688999999999999999999999999887 5555 4899999999999999999
Q ss_pred HHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCC-chHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 041966 88 LFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGL-TTSLHVAASAGHLEIVNELLEARPEFTW 166 (280)
Q Consensus 88 ~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~ 166 (280)
+|++.|+ +++..+..|.||||+|+..|+.+++++|++++. +....+..| .||||+|+..|+.+++++|+++|++..
T Consensus 80 ~Ll~~ga-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 156 (285)
T 3kea_A 80 ILLFSGL-DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF- 156 (285)
T ss_dssp HHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCG-GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC-
T ss_pred HHHHCCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc-
Confidence 9999998 566778999999999999999999999999844 556667777 799999999999999999999998874
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCh-hhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHH
Q 041966 167 KKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTP-LHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLH 245 (280)
Q Consensus 167 ~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 245 (280)
....|.||||+|+..++.+++++|+++|++++. .+..|.|| ||+|+..++.+++++|++.| .+++.++ +
T Consensus 157 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~-------~ 226 (285)
T 3kea_A 157 -DLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSAN-------L 226 (285)
T ss_dssp -CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTT-------G
T ss_pred -cccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCC-------h
Confidence 223899999999999999999999999999876 88899997 99999999999999999988 5666666 3
Q ss_pred HHHhcCcHHHHHHHHHhccc
Q 041966 246 LGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 246 ~a~~~~~~~~~~~Ll~~~~~ 265 (280)
.|+..++.+++++|+++|.+
T Consensus 227 ~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 227 ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp GGGTTTCHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHcCCC
Confidence 56789999999999999764
No 31
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.1e-40 Score=263.69 Aligned_cols=222 Identities=18% Similarity=0.164 Sum_probs=188.0
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHH-------------------------------hhhcCCCCcchhHHHHhcCCHHH
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEII-------------------------------KQTVPGSLNTVLHLAARYGHEEL 51 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~-------------------------------~~~~~~~g~~~L~~A~~~g~~~~ 51 (280)
.+||.|+..|+.++++.|++.+.... ....+..|.||||+|+..|+.++
T Consensus 61 TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~ 140 (337)
T 4g8k_A 61 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 140 (337)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHH
Confidence 48999999999999999998764321 12345789999999999999999
Q ss_pred HHHHHHhChhh---------hhcccccCcchHHHHHhcCcHHHHHHHHhc-ChhhhhhhhhcCCCHHHHHHhcCc----H
Q 041966 52 ALEILKLCPEM---------LAATNEKLETPVHEACREGRLHIVRLFLET-DSWVVHKMNRNKESALYVACERGR----L 117 (280)
Q Consensus 52 ~~~ll~~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~l~~a~~~~~----~ 117 (280)
+++|++.+.+. ....+..|.||||+|+..|+.++|++|+++ |+ +++..+..|.|+++.++..+. .
T Consensus 141 ~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga-d~n~~d~~g~t~l~~~~~~~~~~~~~ 219 (337)
T 4g8k_A 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA-DVNACDNMGRNALIHALLSSDDSDVE 219 (337)
T ss_dssp HHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC-CTTCCCTTSCCHHHHHHHHSCTTTHH
T ss_pred HHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC-CcCccCCCCCcHHHHHHHHcCcccHH
Confidence 99999998762 234456789999999999999999999975 55 677889999999998876544 4
Q ss_pred HHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHh-CCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCC
Q 041966 118 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEA-RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDP 196 (280)
Q Consensus 118 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~ 196 (280)
.++++|++++. +.+..+..|.||||+|+..++.+++++|++. +.+++ ..+..|.||||+|+..|+.+++++|+++|+
T Consensus 220 ~i~~lLl~~ga-d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 297 (337)
T 4g8k_A 220 AITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKRGA 297 (337)
T ss_dssp HHHHHHHHTTC-CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 57888998754 5666788899999999999999999999985 67777 889999999999999999999999999999
Q ss_pred CCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchh
Q 041966 197 DLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSE 234 (280)
Q Consensus 197 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~ 234 (280)
+++. .+|||+|+..++.+++++|+++|+ +++
T Consensus 298 d~n~------~~~L~~A~~~~~~~iv~~Ll~~GA-~~d 328 (337)
T 4g8k_A 298 STDC------GDLVMTARRNYDHSLVKVLLSHGA-KED 328 (337)
T ss_dssp SSTT------CCHHHHHHHTTCHHHHHHHHHTTC-CC-
T ss_pred CCCC------CCHHHHHHHcCCHHHHHHHHHCcC-CCC
Confidence 8653 479999999999999999999984 444
No 32
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.3e-41 Score=261.15 Aligned_cols=246 Identities=18% Similarity=0.109 Sum_probs=183.7
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHH-hhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcC
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEII-KQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREG 81 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~-~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~ 81 (280)
.+||.|++.|+.+.++.|++.+.... ....+..|.||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..|
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~ 89 (282)
T 1oy3_D 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHLACRVR 89 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCHHHHHTTTT
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 58999999999999999999876521 245678899999999999999999999999988 7899999999999999999
Q ss_pred cHHHHHHHHhcChhh------------hhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcC
Q 041966 82 RLHIVRLFLETDSWV------------VHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG 149 (280)
Q Consensus 82 ~~~~v~~Ll~~~~~~------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~ 149 (280)
+.+++++|++.++.. .......+.++++.+...+.......++..........+..|.||||+|+..|
T Consensus 90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 169 (282)
T 1oy3_D 90 AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169 (282)
T ss_dssp CHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT
T ss_pred CcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcC
Confidence 999999999987531 11223345667777766665555555554445667777889999999999999
Q ss_pred CHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhc
Q 041966 150 HLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229 (280)
Q Consensus 150 ~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 229 (280)
+.+++++|+++|++++...+..|.||||+|+..++.+++++|+++|++++. ++..|.||||+|+..++.+++++|++.|
T Consensus 170 ~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 248 (282)
T 1oy3_D 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA-RMYGGRTPLGSALLRPNPILARLLRAHG 248 (282)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc-cccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence 999999999999999843345699999999999999999999999999876 8999999999999999999999999998
Q ss_pred ccchhhhhhcCCchHHHHHhcC
Q 041966 230 LESSEIRTLHGETVLHLGVKNN 251 (280)
Q Consensus 230 ~~~~~~~~~~g~t~l~~a~~~~ 251 (280)
.+++.++..|.||+++|....
T Consensus 249 -a~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 249 -APEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp -CCCCCCC--------------
T ss_pred -CCcCcCCCcccccccccCCcc
Confidence 577889999999999998765
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-42 Score=260.85 Aligned_cols=220 Identities=21% Similarity=0.282 Sum_probs=168.7
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHH------hhhcCCCCcchhHHHHhcCCHH-HHHHHHHhChhhhhcccccCcchHH
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEII------KQTVPGSLNTVLHLAARYGHEE-LALEILKLCPEMLAATNEKLETPVH 75 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~------~~~~~~~g~~~L~~A~~~g~~~-~~~~ll~~~~~~~~~~~~~g~t~L~ 75 (280)
++|+.|++.|+.+.++.|++.+.... ....+..|.+||+.|+..+..+ +++.|++.|.+ ++..|..|+||||
T Consensus 13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~G~TpLh 91 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQDGSSPLH 91 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCTTSCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCCCCCCHHH
Confidence 57999999999999999999876532 1234567889999999988764 78899999988 8999999999999
Q ss_pred HHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHH
Q 041966 76 EACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVN 155 (280)
Q Consensus 76 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 155 (280)
+|+..|+.+++++|++.++ +....+..|.||+++|+..++.+++++|++.+ .+.+..+..|.||||+|+..|+.++++
T Consensus 92 ~A~~~g~~~~v~~Ll~~~a-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~d~~g~TpL~~A~~~g~~~~v~ 169 (269)
T 4b93_B 92 VAALHGRADLIPLLLKHGA-NAGARNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVA 169 (269)
T ss_dssp HHHHTTCTTHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCGGGHH
T ss_pred HHHHcCcHHHHHHHHhcCC-CcCccCCCCCCccccccccChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999998 66677899999999999999999999999985 456677889999999999999999999
Q ss_pred HHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCC-hhhHHHHHH
Q 041966 156 ELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGR-VNIIDEILS 227 (280)
Q Consensus 156 ~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~ 227 (280)
+|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++. .|..|+||||+|+.++. .++++++..
T Consensus 170 ~Ll~~gadvn-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~-~d~~G~TpL~~A~~~~~i~~lL~~l~~ 240 (269)
T 4b93_B 170 LLLQHGASIN-ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV-LNKRQRTAVDCAEQNSKIMELLQVVPS 240 (269)
T ss_dssp HHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCSGGGSCTTCHHHHHTTC---
T ss_pred HHHHCCCCCC-ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHhCCcHHHHHHHHHH
Confidence 9999999998 8899999999999999999999999999999875 89999999999988765 234444443
No 34
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-41 Score=262.60 Aligned_cols=250 Identities=18% Similarity=0.245 Sum_probs=195.8
Q ss_pred HHHHcCChhHHHHHHhhcHHHHh-------hhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHh
Q 041966 7 ETVLKGETPNFLNLVQKDEEIIK-------QTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACR 79 (280)
Q Consensus 7 ~a~~~g~~~~~~~ll~~~~~~~~-------~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~ 79 (280)
.+++.+..+.+..++........ ...+..|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence 46677788888888876544211 11223567999999999999999999999988 78899999999999999
Q ss_pred cCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHH
Q 041966 80 EGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLE 159 (280)
Q Consensus 80 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 159 (280)
.|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|++++. .....+..|.||||+|+..++.+++++++.
T Consensus 83 ~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 83 DDNVDMVKFLVENGA-NINQPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 999999999999998 566778899999999999999999999999854 456667889999999999999898887775
Q ss_pred h-CCC-------------------------CccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhH
Q 041966 160 A-RPE-------------------------FTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWA 213 (280)
Q Consensus 160 ~-~~~-------------------------~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a 213 (280)
. +.+ .....+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~-~d~~g~tpL~~A 239 (299)
T 1s70_B 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAA 239 (299)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHH
T ss_pred hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHH
Confidence 3 222 2223456677888888888888888888888877665 677788888888
Q ss_pred hhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 214 TIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 214 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
+..|+.+++++|++.+ .+++.+|..|.|||++|++. ..+.++.+++.
T Consensus 240 ~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 240 AHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp HHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 8888888888888776 56677778888888888653 44455555544
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.3e-40 Score=248.26 Aligned_cols=215 Identities=19% Similarity=0.252 Sum_probs=195.1
Q ss_pred CChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHh
Q 041966 12 GETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLE 91 (280)
Q Consensus 12 g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 91 (280)
|+.+.++.+++.+.... ...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++
T Consensus 2 g~~~~i~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcc-cccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 67788888998877653 34478899999999999999999999999888 78999999999999999999999999999
Q ss_pred cChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCC
Q 041966 92 TDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPN 171 (280)
Q Consensus 92 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~ 171 (280)
.++...+..+..|.||||+|+..++.+++++|++.+ ...+..+..|.||||+|+..++.+++++|++.|++++ ..+..
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~ 157 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNR 157 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCC
Confidence 998777888899999999999999999999999974 4566677889999999999999999999999999998 78999
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhccc
Q 041966 172 GRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLE 231 (280)
Q Consensus 172 g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 231 (280)
|.||||+|+..++.+++++|+++|++++. .+..|.||+++|+..++.+++++|++.+..
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 99999999999999999999999999865 889999999999999999999999998853
No 36
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-40 Score=257.83 Aligned_cols=220 Identities=22% Similarity=0.282 Sum_probs=194.0
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGR 82 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 82 (280)
.+|+.|+..|+.+.++.|++.+.+. ...+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+
T Consensus 42 t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 42 AVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCC
Confidence 4699999999999999999988764 45678899999999999999999999999988 88999999999999999999
Q ss_pred HHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCcc--------------------------cccccc
Q 041966 83 LHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVS--------------------------LLEMDD 136 (280)
Q Consensus 83 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~--------------------------~~~~~~ 136 (280)
.+++++|++.|+ ..+..+..|.||||+|+..++.+++++++...+.. ....+.
T Consensus 119 ~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (299)
T 1s70_B 119 LDIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197 (299)
T ss_dssp HHHHHHHHHTTC-CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred HHHHHHHHhCCC-CCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence 999999999998 56677899999999999999999998887643322 223456
Q ss_pred CCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhc
Q 041966 137 GLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIK 216 (280)
Q Consensus 137 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~ 216 (280)
.|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||+|+|+..
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA-VNKVGQTAFDVADED 275 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCTTTSCCSG
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHH
Confidence 78999999999999999999999999998 8899999999999999999999999999999875 899999999999753
Q ss_pred CChhhHHHHHHhc
Q 041966 217 GRVNIIDEILSVN 229 (280)
Q Consensus 217 ~~~~~~~~Ll~~~ 229 (280)
..+.++.+++..
T Consensus 276 -~~~~l~~l~~~~ 287 (299)
T 1s70_B 276 -ILGYLEELQKKQ 287 (299)
T ss_dssp -GGHHHHHHHHHT
T ss_pred -HHHHHHHHHHHH
Confidence 455555665544
No 37
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=5.4e-41 Score=252.41 Aligned_cols=216 Identities=23% Similarity=0.286 Sum_probs=148.1
Q ss_pred hcCCCCcchhHHHHhcCCHHHHHHHHHhChh---hhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCH
Q 041966 31 TVPGSLNTVLHLAARYGHEELALEILKLCPE---MLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESA 107 (280)
Q Consensus 31 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 107 (280)
..+..|.||||+|+..|+.+++++|++.+.. .++..+..|.||||+|+..|+.+++++|++.|+ .++..+..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCH
Confidence 3467788888888888888888888877664 367777888888888888888888888888877 555667788888
Q ss_pred HHHHHhcCcHHHHHHHHcCCCc-----cccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCC-CCCcHHHHHHh
Q 041966 108 LYVACERGRLDVVKQLLNYPSV-----SLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDP-NGRTPLTLCSS 181 (280)
Q Consensus 108 l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~g~~~l~~a~~ 181 (280)
||+|+..|+.+++++|++.+.. .....+..|.||||+|+..++.+++++|+++|++++ ..+. .|.||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHH
Confidence 8888888888888888877542 234455566677777777777777777777777766 4444 67777777777
Q ss_pred cCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccch-hhhhhcCCchHHHHHh
Q 041966 182 KGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESS-EIRTLHGETVLHLGVK 249 (280)
Q Consensus 182 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~l~~a~~ 249 (280)
.++.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+.... ..++..|.|+.+.+..
T Consensus 161 ~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 161 LQNPDLVSLLLKCGADVNR-VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp TTCHHHHHHHHTTTCCSCC-CCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred cCCHHHHHHHHHcCCCCCc-ccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 7777777777777776654 66667777777777777777777776664332 2455566666655443
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5e-39 Score=242.32 Aligned_cols=223 Identities=19% Similarity=0.185 Sum_probs=200.0
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGR 82 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 82 (280)
.+|+.|+..|+.+.++.+++.+.+. ...+..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+
T Consensus 11 ~~l~~A~~~g~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 11 WDIVKATQYGIYERCRELVEAGYDV--RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp CCHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred hHHHHHHHcCChHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 4689999999999999999988664 45578899999999999999999999999998655666779999999999999
Q ss_pred HHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCC-HHHHHHHHHhC
Q 041966 83 LHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH-LEIVNELLEAR 161 (280)
Q Consensus 83 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~ 161 (280)
.+++++|++.++ ..+..+..|.||||+|+..|+.+++++|++++. .....+..|.||||+|+..++ .+++++|++.+
T Consensus 89 ~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 89 LSMVVQLMKYGA-DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp HHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred HHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC-CccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence 999999999988 566678899999999999999999999999854 566777889999999997665 89999999999
Q ss_pred CCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcc
Q 041966 162 PEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230 (280)
Q Consensus 162 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 230 (280)
++++......|.||||+|+..++.+++++|+++|++++. .+..|.||+++|+..++.+++++|++.+.
T Consensus 167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-QNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 999843334899999999999999999999999999865 88999999999999999999999999874
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.6e-39 Score=249.51 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=189.4
Q ss_pred HhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHH
Q 041966 44 ARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQL 123 (280)
Q Consensus 44 ~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L 123 (280)
+...+.+.+..++..+ + ++..|..|.||||+|+..|+.+++++|++.|++ ++.. +|.||||+|+..|+.+++++|
T Consensus 7 i~~~~~~~v~~lL~~~-~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-D-TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGGCCHHHHHHHHHST-T-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred HHhcCHHHHHHHHHhC-C-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHHHH
Confidence 3444544455555544 2 789999999999999999999999999999984 3333 589999999999999999999
Q ss_pred HcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCC-CcHHHHHHhcCcHHHHHHHHhcCCCCCCCC
Q 041966 124 LNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNG-RTPLTLCSSKGHLEITRELLKMDPDLSSSQ 202 (280)
Q Consensus 124 l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g-~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~ 202 (280)
++++. +.+..+..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|+..++.+++++|+++|++...
T Consensus 82 l~~ga-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-- 157 (285)
T 3kea_A 82 LFSGL-DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-- 157 (285)
T ss_dssp HHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--
T ss_pred HHCCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--
Confidence 99854 456678899999999999999999999999999998 788888 8999999999999999999999998633
Q ss_pred CCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCch-HHHHHhcCcHHHHHHHHHhcccccccCCCCC
Q 041966 203 DNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETV-LHLGVKNNQYEAVKHLMETLNTTKLVNTPDN 274 (280)
Q Consensus 203 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~ 274 (280)
...|.||||+|+..|+.+++++|++.+ .+++.++..|.|| ||+|+..++.+++++|+++| ++++.+|.
T Consensus 158 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g---ad~~~~~~ 226 (285)
T 3kea_A 158 LAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD---INIYSANL 226 (285)
T ss_dssp CSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC---BCSTTTTG
T ss_pred ccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCCh
Confidence 238899999999999999999999997 6788899999998 99999999999999999994 45777764
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6e-40 Score=246.70 Aligned_cols=213 Identities=20% Similarity=0.181 Sum_probs=184.4
Q ss_pred hcccccCcchHHHHHhcCcHHHHHHHHhcChh---hhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCch
Q 041966 64 AATNEKLETPVHEACREGRLHIVRLFLETDSW---VVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTT 140 (280)
Q Consensus 64 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 140 (280)
+..|..|.||||+|+..|+.+++++|++.+.. .++..+..|.||||+|+..|+.+++++|++++. .....+..|.|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t 80 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELRDFRGNT 80 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCCCTTCCC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCC
Confidence 35678999999999999999999999998764 366778899999999999999999999999854 55667788999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-----ccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCC-CCCChhhhHh
Q 041966 141 SLHVAASAGHLEIVNELLEARPEF-----TWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDN-EGRTPLHWAT 214 (280)
Q Consensus 141 ~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~ 214 (280)
|||+|+..++.+++++|++.+.+. ....+..|.||||+|+..++.+++++|+++|++++. .+. .|.||||+|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~tpL~~A~ 159 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRTALHLAV 159 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHH
Confidence 999999999999999999998753 236788899999999999999999999999999876 565 9999999999
Q ss_pred hcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 215 IKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 215 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
..|+.+++++|++.+ .+++.+|..|.|||++|+..++.+++++|+++|++. ....++..|+||.
T Consensus 160 ~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-~~~~~~~~~~~~~ 223 (236)
T 1ikn_D 160 DLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN-LQMLPESEDEESY 223 (236)
T ss_dssp HTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG-GSSCCCCCTTTCC
T ss_pred HcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh-hhcCCccchHHHH
Confidence 999999999999987 678889999999999999999999999999997753 3568899999884
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.7e-38 Score=238.26 Aligned_cols=208 Identities=21% Similarity=0.214 Sum_probs=154.5
Q ss_pred CCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhh----hhhhhcCCCHHHH
Q 041966 35 SLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVV----HKMNRNKESALYV 110 (280)
Q Consensus 35 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----~~~~~~~~t~l~~ 110 (280)
.|.||||+|+..|+.+++++|++..+..++..|..|.||||+|+..|+.+++++|++.+++.. ...+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478899999999999999999988333378888889999999999999999999998887432 3345567777777
Q ss_pred HHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHH
Q 041966 111 ACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRE 190 (280)
Q Consensus 111 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ 190 (280)
|+..|+.+++++|++++.... ..+... .+. .... ..+..|.||||+|+..++.+++++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~-~~~~~~--~~~------------------~~~~-~~~~~g~t~L~~A~~~~~~~~v~~ 139 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVS-ARATGS--VFH------------------YRPH-NLIYYGEHPLSFAACVGSEEIVRL 139 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT-CCCCSG--GGS------------------CCTT-CSCCCCSSHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCC-cccCCc--cee------------------eccc-ccccCCCCHHHHHHHcCCHHHHHH
Confidence 777777777777777644322 222111 100 0111 345578888888888888888888
Q ss_pred HHhcCCCCCCCCCCCCCChhhhHhhcCChhhH----HHHHHhcccch-----hhhhhcCCchHHHHHhcCcHHHHHHHHH
Q 041966 191 LLKMDPDLSSSQDNEGRTPLHWATIKGRVNII----DEILSVNLESS-----EIRTLHGETVLHLGVKNNQYEAVKHLME 261 (280)
Q Consensus 191 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~----~~Ll~~~~~~~-----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~ 261 (280)
|+++|++++. .+..|.||||+|+..++.+++ ++|++.+.... +.+|..|.||||+|++.|+.+++++|++
T Consensus 140 Ll~~ga~~~~-~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 140 LIEHGADIRA-QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHTTCCTTC-CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHCCCCCCC-CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 8888888765 778888888888888888777 78887775432 5678888888888888888888888888
Q ss_pred hccc
Q 041966 262 TLNT 265 (280)
Q Consensus 262 ~~~~ 265 (280)
+++.
T Consensus 219 ~g~~ 222 (232)
T 2rfa_A 219 KRKH 222 (232)
T ss_dssp HHHH
T ss_pred cCcc
Confidence 8765
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.9e-38 Score=236.95 Aligned_cols=206 Identities=21% Similarity=0.255 Sum_probs=171.6
Q ss_pred ChHHHHHHHcCChhHHHHHHhh-cHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhh----hcccccCcchHHH
Q 041966 2 DERLFETVLKGETPNFLNLVQK-DEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEML----AATNEKLETPVHE 76 (280)
Q Consensus 2 ~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~----~~~~~~g~t~L~~ 76 (280)
..+|+.|++.|+.+.++.+++. +.+. ...+..|.||||+|+..|+.+++++|++.+++.. +..+..|.||||+
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEV--HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCc--ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 3589999999999999999998 4443 4457899999999999999999999999998843 5567789999999
Q ss_pred HHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHH
Q 041966 77 ACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNE 156 (280)
Q Consensus 77 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 156 (280)
|+..|+.+++++|++.+++. +..+.. +.+. ......+..|.||||+|+..|+.+++++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~--~~~~-------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 139 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASV-SARATG--SVFH-------------------YRPHNLIYYGEHPLSFAACVGSEEIVRL 139 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCCS--GGGS-------------------CCTTCSCCCCSSHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCC-CcccCC--ccee-------------------ecccccccCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999999998843 332221 1110 1223445678899999999999999999
Q ss_pred HHHhCCCCccCCCCCCCcHHHHHHhcCcHHHH----HHHHhcCCCCC-----CCCCCCCCChhhhHhhcCChhhHHHHHH
Q 041966 157 LLEARPEFTWKKDPNGRTPLTLCSSKGHLEIT----RELLKMDPDLS-----SSQDNEGRTPLHWATIKGRVNIIDEILS 227 (280)
Q Consensus 157 ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~----~~Ll~~~~~~~-----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~ 227 (280)
|+++|++++ ..+..|.||||+|+..++.+++ ++|+++|++.. ...+..|.||||+|+..|+.+++++|++
T Consensus 140 Ll~~ga~~~-~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 140 LIEHGADIR-AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHTTCCTT-CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHCCCCCC-CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999988 7899999999999999999888 99999999864 3578899999999999999999999999
Q ss_pred hcccc
Q 041966 228 VNLES 232 (280)
Q Consensus 228 ~~~~~ 232 (280)
++...
T Consensus 219 ~g~~~ 223 (232)
T 2rfa_A 219 KRKHI 223 (232)
T ss_dssp HHHHC
T ss_pred cCccc
Confidence 88543
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.4e-38 Score=232.30 Aligned_cols=192 Identities=22% Similarity=0.251 Sum_probs=142.8
Q ss_pred CCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHh
Q 041966 34 GSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACE 113 (280)
Q Consensus 34 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 113 (280)
..+.||||.|+..|+.+.+++|+..++..++..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-DINLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHH
Confidence 4677888888888888888888888775578888888888888888888888888888877 555667777788888888
Q ss_pred cCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhC-CCCccCCCCCCCcHHHHHHhcCc-----HHH
Q 041966 114 RGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEAR-PEFTWKKDPNGRTPLTLCSSKGH-----LEI 187 (280)
Q Consensus 114 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~g~~~l~~a~~~~~-----~~~ 187 (280)
.|+.+++++|++.++......+..|.||||+|+..++.+++++|++.| .+++ ..+..|.||||+|+..++ .++
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHH
Confidence 888888887776556566666667777777777777777777777777 5554 666677777777776665 677
Q ss_pred HHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHh
Q 041966 188 TRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSV 228 (280)
Q Consensus 188 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 228 (280)
+++|+++|++++. .+..|.||||+|+..|+.+++++|++.
T Consensus 161 v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 161 VKLLMENGADQSI-KDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHCCCCCCc-cCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 7777777776654 666677777777777777777766654
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=9.8e-37 Score=223.68 Aligned_cols=193 Identities=18% Similarity=0.248 Sum_probs=174.8
Q ss_pred cccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHH
Q 041966 67 NEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAA 146 (280)
Q Consensus 67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~ 146 (280)
+..+.||||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|++.+. +....+..|.||||+|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-DINLQNSISDSPYLYAG 80 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHH
Confidence 35678999999999999999999999887778889999999999999999999999999854 55667788999999999
Q ss_pred hcCCHHHHHHHHHhCC-CCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcC-CCCCCCCCCCCCChhhhHhhcCC-----h
Q 041966 147 SAGHLEIVNELLEARP-EFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD-PDLSSSQDNEGRTPLHWATIKGR-----V 219 (280)
Q Consensus 147 ~~~~~~~~~~ll~~~~-~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~-----~ 219 (280)
..++.+++++|++.+. +++ ..+..|.||||+|+..++.+++++|+++| ++++. .+..|.||||+|+..++ .
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLN-KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTT-CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHHHHSSCCSHHHH
T ss_pred HcCCHHHHHHHHhccCcccc-cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHHHHhccchhhHH
Confidence 9999999999996544 555 88999999999999999999999999999 66654 89999999999999998 8
Q ss_pred hhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 220 NIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 220 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
+++++|++.+ .+++.+|..|.||||+|++.|+.+++++|++.|
T Consensus 159 ~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 159 DIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999988 677889999999999999999999999999874
No 45
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.9e-37 Score=235.90 Aligned_cols=203 Identities=21% Similarity=0.210 Sum_probs=152.3
Q ss_pred CCcchhHHHHhcCCHH----HHHHHHHhChhhhhc----ccccCcchHHHHHhc---CcHHHHHHHHhcChhhhhhhhhc
Q 041966 35 SLNTVLHLAARYGHEE----LALEILKLCPEMLAA----TNEKLETPVHEACRE---GRLHIVRLFLETDSWVVHKMNRN 103 (280)
Q Consensus 35 ~g~~~L~~A~~~g~~~----~~~~ll~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~ 103 (280)
.|.||||.|+..|+.+ ++++|++.+.+ ++. .|..|.||||+|+.. |+.+++++|++.++..... +
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~-~-- 76 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP-K-- 76 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCS-S--
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccch-h--
Confidence 4678888888888886 55666667766 565 778888888888888 8888888888877633211 1
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCC-------------
Q 041966 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDP------------- 170 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~------------- 170 (280)
.++. ......+..|.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus 77 ------------------~~~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~ 134 (256)
T 2etb_A 77 ------------------PLVN---AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFY 134 (256)
T ss_dssp ------------------CGGG---CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCC
T ss_pred ------------------hhcc---cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccccccccccccccccc
Confidence 0000 0111223456666666666666666666666666665 3443
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHh---cCCCCCCCCCCCCCChhhhHhh--cCChh-------hHHHHHHhcccch-----
Q 041966 171 NGRTPLTLCSSKGHLEITRELLK---MDPDLSSSQDNEGRTPLHWATI--KGRVN-------IIDEILSVNLESS----- 233 (280)
Q Consensus 171 ~g~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~----- 233 (280)
.|.||||+|+..++.+++++|++ +|++++. .+..|.||||+|+. .++.+ ++++|++.+ .++
T Consensus 135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~ 212 (256)
T 2etb_A 135 FGELPLSLAACTKQWDVVTYLLENPHQPASLEA-TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQ 212 (256)
T ss_dssp SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc-cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccc
Confidence 39999999999999999999999 8998776 78899999999998 77777 999999988 455
Q ss_pred --hhhhhcCCchHHHHHhcCcHHHHHHHHHhccc
Q 041966 234 --EIRTLHGETVLHLGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 234 --~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 265 (280)
+.+|..|.||||+|++.|+.+++++|+++++.
T Consensus 213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 78899999999999999999999999999765
No 46
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=8.5e-39 Score=251.25 Aligned_cols=246 Identities=13% Similarity=0.061 Sum_probs=190.3
Q ss_pred cCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhc-----------------ccccCcch
Q 041966 11 KGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAA-----------------TNEKLETP 73 (280)
Q Consensus 11 ~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~-----------------~~~~g~t~ 73 (280)
....+.++.+++++.+. ...+..|.++++ |+.++++.|++++.+ ++. ......+.
T Consensus 29 ~~~~dlv~~ll~~ga~i--~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKI--MKALPSPVVNDN-----EQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQ 100 (327)
T ss_dssp ECCTTCCCSTTTSSCCC--EECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred hhcCchHHHHhhCCccc--ccCCCCCCcccC-----chhHHHHHHHHhccC-CccccchHhhhcccccccccccCCccch
Confidence 34556677788877665 345678889877 999999999999865 222 11111233
Q ss_pred HHHHHhcCcHHHHHHHHhcChhhhhh-hhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCC--
Q 041966 74 VHEACREGRLHIVRLFLETDSWVVHK-MNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH-- 150 (280)
Q Consensus 74 L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~-- 150 (280)
+|.|+..+..+++++|++.+. +++. .|..|.||||+|+..|+.+++++|++++ .+.+..+..|.||||+|+..|+
T Consensus 101 ~~~a~~~~~~~~~~~l~~~g~-dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-ad~n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 101 QHVSFDSLLQEVNDAFPNTQL-NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp ---CHHHHHHHHHHHCTTSCC-CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred hHHHHHhhHHHHHHHHHhcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhcccc
Confidence 577888888899999999988 5555 7999999999999999999999999985 4556778899999999999988
Q ss_pred -HHHHHHHHHhC-CCCccCCCCCCCcHHHHHHh----cCcHHHHHHHHhc--------------------CCCCCCCCCC
Q 041966 151 -LEIVNELLEAR-PEFTWKKDPNGRTPLTLCSS----KGHLEITRELLKM--------------------DPDLSSSQDN 204 (280)
Q Consensus 151 -~~~~~~ll~~~-~~~~~~~~~~g~~~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~~~ 204 (280)
.++++.|++.+ .+++ ..+..|.||||+|+. .++.+++++|++. |++++. .+.
T Consensus 179 ~~~~~~~ll~~~~~~~~-~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~ 256 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLI-LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-KNG 256 (327)
T ss_dssp HTTCHHHHHHHHGGGGG-EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred cHHHHHHHHHhhhcccc-CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc-ccc
Confidence 67888888876 4555 789999999999998 8999999999987 777765 788
Q ss_pred CCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 205 EGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 205 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
.|.||||.|+. +++|++. +++.+|..|+||||+|++.|+.+++++|+++ |++++.+|..|+|||
T Consensus 257 ~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL 320 (327)
T 1sw6_A 257 ERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPV 320 (327)
T ss_dssp ---CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGG
T ss_pred cCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHH
Confidence 99999999985 8899987 4778899999999999999999999999999 556999999999997
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=3.9e-37 Score=236.33 Aligned_cols=220 Identities=20% Similarity=0.200 Sum_probs=151.3
Q ss_pred hcCCCCcchhHHHHhcCCHHHHHHHHHhChhh---hh----cccccCcchHHHHHhc---CcHHHHHHHHhcChhhhhhh
Q 041966 31 TVPGSLNTVLHLAARYGHEELALEILKLCPEM---LA----ATNEKLETPVHEACRE---GRLHIVRLFLETDSWVVHKM 100 (280)
Q Consensus 31 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~---~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~ 100 (280)
..+..|.||||.|+..|+.++++.|++.+... ++ ..+..|.||||+|+.. |+.+++++|++.++....
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~-- 85 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS-- 85 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC--
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc--
Confidence 45677888888888888888888887753321 22 3467788888888876 888888888887763211
Q ss_pred hhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCC----------
Q 041966 101 NRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDP---------- 170 (280)
Q Consensus 101 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~---------- 170 (280)
++.++.. .....+..|.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus 86 -------------------~~~~i~~---~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~ 142 (273)
T 2pnn_A 86 -------------------LKQFVNA---SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGR 142 (273)
T ss_dssp -------------------HHHHHTC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSS
T ss_pred -------------------hhHHhhc---ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-cccccccccccccc
Confidence 0111211 111234456667777777777777777777776665 3333
Q ss_pred ----CCCcHHHHHHhcCcHHHHHHHHh---cCCCCCCCCCCCCCChhhhHhhcCC---------hhhHHHHHHhcccch-
Q 041966 171 ----NGRTPLTLCSSKGHLEITRELLK---MDPDLSSSQDNEGRTPLHWATIKGR---------VNIIDEILSVNLESS- 233 (280)
Q Consensus 171 ----~g~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~- 233 (280)
.|.||||+|+..++.+++++|++ +|++++. .+..|.||||+|+..++ .+++++|++.+. ++
T Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-~~n 220 (273)
T 2pnn_A 143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA-KLH 220 (273)
T ss_dssp CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-HHC
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh-hcc
Confidence 78999999999999999999999 8888765 78889999999998887 788889998874 44
Q ss_pred ------hhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCC
Q 041966 234 ------EIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTI 279 (280)
Q Consensus 234 ------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~ 279 (280)
+.+|..|.||||+|++.|+.+++++|+++|+. +.......+.+|
T Consensus 221 ~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~--dp~~~~~~~~~~ 270 (273)
T 2pnn_A 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--EPECRHAAAHHH 270 (273)
T ss_dssp TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred cccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC--Cchhhhhhhhhc
Confidence 35788999999999999999999999999764 244555444443
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=3.4e-37 Score=236.69 Aligned_cols=219 Identities=20% Similarity=0.232 Sum_probs=152.2
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHh------hhcCCCCcchhHHHHhc---CCHHHHHHHHHhChhh------hhc--
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIK------QTVPGSLNTVLHLAARY---GHEELALEILKLCPEM------LAA-- 65 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~------~~~~~~g~~~L~~A~~~---g~~~~~~~ll~~~~~~------~~~-- 65 (280)
.+|+.|++.|+.+.++.|++.+..... ...+..|.||||+|+.. |+.+++++|++.+++. ++.
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~ 94 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASY 94 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccc
Confidence 589999999999999999986443211 13467899999999987 9999999999998752 222
Q ss_pred --ccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHH
Q 041966 66 --TNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLH 143 (280)
Q Consensus 66 --~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~ 143 (280)
.|..|.||||+|+..|+.+++++|++.|+ +++..+..+. +. .......+..|.||||
T Consensus 95 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~------------------~~--~~~~~~~~~~g~tpL~ 153 (273)
T 2pnn_A 95 TDSYYKGQTALHIAIERRNMTLVTLLVENGA-DVQAAANGDF------------------FK--KTKGRPGFYFGELPLS 153 (273)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCBCSGG------------------GS--SCSSSCCCCSCBSHHH
T ss_pred ccccCCCCCHHHHHHHcCCHHHHHHHHHCCC-CcCccccccc------------------cc--cccccccccCCCCHHH
Confidence 45678888888888888888888888887 3344333210 00 0112223446777888
Q ss_pred HHHhcCCHHHHHHHHH---hCCCCccCCCCCCCcHHHHHHhcCc---------HHHHHHHHhcCCCCCC------CCCCC
Q 041966 144 VAASAGHLEIVNELLE---ARPEFTWKKDPNGRTPLTLCSSKGH---------LEITRELLKMDPDLSS------SQDNE 205 (280)
Q Consensus 144 ~a~~~~~~~~~~~ll~---~~~~~~~~~~~~g~~~l~~a~~~~~---------~~~~~~Ll~~~~~~~~------~~~~~ 205 (280)
+|+..|+.+++++|++ .|++++ ..+..|.||||+|+..++ .+++++|+++|++++. ..+..
T Consensus 154 ~A~~~g~~~~v~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~ 232 (273)
T 2pnn_A 154 LAACTNQLAIVKFLLQNSWQPADIS-ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK 232 (273)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred HHHHcCCHHHHHHHHhcccCCCCce-eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC
Confidence 8888888888888887 777776 677778888888887766 6778888888777652 36777
Q ss_pred CCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCch
Q 041966 206 GRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETV 243 (280)
Q Consensus 206 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 243 (280)
|.||||+|+..|+.+++++|++.++.++......+.+|
T Consensus 233 g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 233 GLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred CCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 88888888888888888888888765665555555444
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=7.1e-37 Score=232.73 Aligned_cols=204 Identities=22% Similarity=0.257 Sum_probs=159.3
Q ss_pred hHHHHHHHcCChhHHHHHHh----hcHHHHhh---hcCCCCcchhHHHHhc---CCHHHHHHHHHhChhhhhc-------
Q 041966 3 ERLFETVLKGETPNFLNLVQ----KDEEIIKQ---TVPGSLNTVLHLAARY---GHEELALEILKLCPEMLAA------- 65 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~----~~~~~~~~---~~~~~g~~~L~~A~~~---g~~~~~~~ll~~~~~~~~~------- 65 (280)
.+||.|++.|+.+.++.+++ .+.+. +. ..+..|.||||+|+.. |+.+++++|++.+++. +.
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~ 81 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS-GNPKPLVNA 81 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT-TCSSCGGGC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc-cchhhhccc
Confidence 58999999999986655554 44433 21 2578999999999999 9999999999998873 32
Q ss_pred ----ccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchH
Q 041966 66 ----TNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTS 141 (280)
Q Consensus 66 ----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 141 (280)
.|..|.||||+|+..|+.+++++|++.|+ +++..+..+.++ ......+..|.||
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~---------------------~~~~~~~~~g~tp 139 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA-DVHLRACGRFFQ---------------------KHQGTCFYFGELP 139 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCCSGGGS---------------------CCSSSCCCSCSSH
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccccccccc---------------------ccccccccCCCCH
Confidence 23668899999999999999999988887 344434332210 1122234457888
Q ss_pred HHHHHhcCCHHHHHHHHH---hCCCCccCCCCCCCcHHHHHHh--cCcHH-------HHHHHHhcCCCCC------CCCC
Q 041966 142 LHVAASAGHLEIVNELLE---ARPEFTWKKDPNGRTPLTLCSS--KGHLE-------ITRELLKMDPDLS------SSQD 203 (280)
Q Consensus 142 l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~g~~~l~~a~~--~~~~~-------~~~~Ll~~~~~~~------~~~~ 203 (280)
||+|+..|+.+++++|++ .|++++ ..+..|.||||+|+. .++.+ ++++|+++|+++. ...+
T Consensus 140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d 218 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCC
T ss_pred HHHHHHcCCHHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccC
Confidence 999888888999999998 888887 788889999999988 77777 9999999988872 3478
Q ss_pred CCCCChhhhHhhcCChhhHHHHHHhccc
Q 041966 204 NEGRTPLHWATIKGRVNIIDEILSVNLE 231 (280)
Q Consensus 204 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 231 (280)
..|.||||+|+..|+.+++++|++++..
T Consensus 219 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 219 HQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 8899999999999999999999998843
No 50
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2e-37 Score=243.43 Aligned_cols=228 Identities=18% Similarity=0.128 Sum_probs=178.0
Q ss_pred cCChhHHHHHHhhcHHHHhhh---------------cCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhc-ccccCcchH
Q 041966 11 KGETPNFLNLVQKDEEIIKQT---------------VPGSLNTVLHLAARYGHEELALEILKLCPEMLAA-TNEKLETPV 74 (280)
Q Consensus 11 ~g~~~~~~~ll~~~~~~~~~~---------------~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~-~~~~g~t~L 74 (280)
.|+.+.++.|++++....... ......+.+|.|+..+..++++.|++.+.+ ++. .|..|.|||
T Consensus 57 ~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpL 135 (327)
T 1sw6_A 57 NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPL 135 (327)
T ss_dssp HHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHH
T ss_pred CchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHH
Confidence 388899999999875432100 011122345888888888999999998888 787 899999999
Q ss_pred HHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCc---HHHHHHHHcCCCccccccccCCchHHHHHHh----
Q 041966 75 HEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGR---LDVVKQLLNYPSVSLLEMDDGLTTSLHVAAS---- 147 (280)
Q Consensus 75 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~---- 147 (280)
|+|+..|+.++|++|++.|+ +++..|..|.||||+|+..|+ .++++.|++.+.......+..|.||||+|+.
T Consensus 136 h~Aa~~g~~~~v~~Ll~~Ga-d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~ 214 (327)
T 1sw6_A 136 HWLTSIANLELVKHLVKHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 214 (327)
T ss_dssp HHHHHTTCHHHHHHHHHTTC-CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccc
Confidence 99999999999999999998 667889999999999999998 6777888877656678889999999999999
Q ss_pred cCCHHHHHHHHHh--------------------CCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCC
Q 041966 148 AGHLEIVNELLEA--------------------RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGR 207 (280)
Q Consensus 148 ~~~~~~~~~ll~~--------------------~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 207 (280)
.++.+++++|++. |++++ ..+..|.||||.|+. +++|++++. + ..+..|+
T Consensus 215 ~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~g~t~L~~a~~------~~~Ll~~~~--n-~~d~~G~ 284 (327)
T 1sw6_A 215 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN-DKNGERKDSILENLD------LKWIIANML--N-AQDSNGD 284 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHHTT--T-CCCTTSC
T ss_pred cccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc-cccccCCChhHHHHH------HHHHHHhCC--C-CCCCCCC
Confidence 8999999999987 77777 788999999999985 899999853 3 3788999
Q ss_pred ChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcC
Q 041966 208 TPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNN 251 (280)
Q Consensus 208 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~ 251 (280)
||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|++.|
T Consensus 285 TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 285 TCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred CHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence 9999999999999999999987 678899999999999998764
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=9.5e-36 Score=227.05 Aligned_cols=206 Identities=17% Similarity=0.177 Sum_probs=159.6
Q ss_pred CCCCcchhHHHHhcCCHHHHHHHHH----hChhhhhccc----ccCcchHHHHH---hcCcHHHHHHHHhcChhhhhhhh
Q 041966 33 PGSLNTVLHLAARYGHEELALEILK----LCPEMLAATN----EKLETPVHEAC---REGRLHIVRLFLETDSWVVHKMN 101 (280)
Q Consensus 33 ~~~g~~~L~~A~~~g~~~~~~~ll~----~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~~~~~~~~~~ 101 (280)
+..+.++||.|++.|+.+.++.|++ .+.+ ++..+ ..|.||||+|+ ..|+.+++++|++.++......
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~- 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR- 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH-
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH-
Confidence 3467788888888888885444444 6665 44443 56888888888 6688888888888776321110
Q ss_pred hcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCC------------
Q 041966 102 RNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKD------------ 169 (280)
Q Consensus 102 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~------------ 169 (280)
.++ .......+..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus 80 --------------------~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~ 135 (260)
T 3jxi_A 80 --------------------EFI---NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGG 135 (260)
T ss_dssp --------------------HHH---TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCC
T ss_pred --------------------hhh---cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccc
Confidence 011 12233445577888888888888888888888888887 455
Q ss_pred --CCCCcHHHHHHhcCcHHHHHHHHh---cCCCCCCCCCCCCCChhhhHhhcCC---------hhhHHHHHHhcccch--
Q 041966 170 --PNGRTPLTLCSSKGHLEITRELLK---MDPDLSSSQDNEGRTPLHWATIKGR---------VNIIDEILSVNLESS-- 233 (280)
Q Consensus 170 --~~g~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-- 233 (280)
..|.||||+|+..++.+++++|++ +|++++. .+..|.||||+|+..++ .+++++|++.+. ++
T Consensus 136 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-~~~~ 213 (260)
T 3jxi_A 136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA-KLFP 213 (260)
T ss_dssp SCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH-HHCT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc-cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc-cccc
Confidence 679999999999999999999999 8999876 89999999999998777 689999999884 44
Q ss_pred -----hhhhhcCCchHHHHHhcCcHHHHHHHHHhcccc
Q 041966 234 -----EIRTLHGETVLHLGVKNNQYEAVKHLMETLNTT 266 (280)
Q Consensus 234 -----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~ 266 (280)
+.+|..|.||||+|++.|+.+++++|+++++..
T Consensus 214 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 678999999999999999999999999998753
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.1e-35 Score=208.23 Aligned_cols=158 Identities=28% Similarity=0.409 Sum_probs=118.2
Q ss_pred chhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcH
Q 041966 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRL 117 (280)
Q Consensus 38 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~ 117 (280)
+.|+.|++.|+.++|+.|++.|++ ++..|..|+||||+|+..++.+++++|++.++ +++..|..|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-d~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc-chhhhccCCCCHHHHHHHcCCH
Confidence 357788888888888888888777 77888888888888888888888888888877 5566677777888888887777
Q ss_pred HHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCC
Q 041966 118 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPD 197 (280)
Q Consensus 118 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~ 197 (280)
+++++|++++. +.+..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++
T Consensus 84 ~~v~~Ll~~ga-dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 84 EVVKLLISKGA-DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHHCcC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 77777777643 455566777777777777777777777777777776 6777777777777777777777777777777
Q ss_pred CC
Q 041966 198 LS 199 (280)
Q Consensus 198 ~~ 199 (280)
+.
T Consensus 162 ie 163 (169)
T 4gpm_A 162 LE 163 (169)
T ss_dssp --
T ss_pred cC
Confidence 54
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.6e-34 Score=204.61 Aligned_cols=154 Identities=32% Similarity=0.469 Sum_probs=107.7
Q ss_pred HHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHH
Q 041966 107 ALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLE 186 (280)
Q Consensus 107 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~ 186 (280)
+|+.|++.|+.+++++|++.+ .+.+..+..|.|||++|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~G-advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCHH
Confidence 466666666666666666653 3345556666677777777777777777777777766 66777777777777777777
Q ss_pred HHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcc
Q 041966 187 ITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264 (280)
Q Consensus 187 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 264 (280)
++++|+++|++++. ++..|+||||+|+..|+.+++++|++.+ .+++.+|..|+|||++|++.|+.+++++|+++|+
T Consensus 85 ~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 85 VVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp HHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred HHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 77777777777654 6777777777777777777777777766 4566677777777777777777777777777744
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.1e-35 Score=226.60 Aligned_cols=207 Identities=21% Similarity=0.260 Sum_probs=151.0
Q ss_pred hHHHHHHHcCChhHHHHHHh----hcHHHHhh--hcCCCCcchhHHHH---hcCCHHHHHHHHHhChhh----------h
Q 041966 3 ERLFETVLKGETPNFLNLVQ----KDEEIIKQ--TVPGSLNTVLHLAA---RYGHEELALEILKLCPEM----------L 63 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~----~~~~~~~~--~~~~~g~~~L~~A~---~~g~~~~~~~ll~~~~~~----------~ 63 (280)
.+||.|++.|+.+.++.+++ .+...... ..+..|.||||+|+ +.|+.+++++|++.+.+. .
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 57999999999998887777 44443222 12367999999999 789999999999988652 2
Q ss_pred hcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHH
Q 041966 64 AATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLH 143 (280)
Q Consensus 64 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~ 143 (280)
...|..|.||||+|+..|+.++|++|++.|+ +++..+..+. .........+..|.||||
T Consensus 87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~--------------------~~~~~~~~~~~~g~tpL~ 145 (260)
T 3jxi_A 87 RDVYYRGQTALHIAIERRCKHYVELLVEKGA-DVHAQARGRF--------------------FQPKDEGGYFYFGELPLS 145 (260)
T ss_dssp CCSSEESBCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCEECC--------------------CSSSCCCCSCCSCSSHHH
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhCCC-CcCccccccc--------------------cCcccccccccCCCCHHH
Confidence 2334478888888888888888888888877 3333332110 001112222356778888
Q ss_pred HHHhcCCHHHHHHHHH---hCCCCccCCCCCCCcHHHHHHhcCc---------HHHHHHHHhcCCCCC------CCCCCC
Q 041966 144 VAASAGHLEIVNELLE---ARPEFTWKKDPNGRTPLTLCSSKGH---------LEITRELLKMDPDLS------SSQDNE 205 (280)
Q Consensus 144 ~a~~~~~~~~~~~ll~---~~~~~~~~~~~~g~~~l~~a~~~~~---------~~~~~~Ll~~~~~~~------~~~~~~ 205 (280)
+|+..|+.+++++|++ .|++++ ..+..|.||||+|+..++ .+++++|+++|++++ ...+..
T Consensus 146 ~A~~~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~ 224 (260)
T 3jxi_A 146 LAACTNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224 (260)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred HHHHcCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCC
Confidence 8888888888888888 778777 778888888888887666 678888888887763 247788
Q ss_pred CCChhhhHhhcCChhhHHHHHHhccc
Q 041966 206 GRTPLHWATIKGRVNIIDEILSVNLE 231 (280)
Q Consensus 206 g~t~l~~a~~~~~~~~~~~Ll~~~~~ 231 (280)
|.||||+|+..|+.+++++|+++++.
T Consensus 225 g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 225 GLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 88888888888888888888888753
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=222.40 Aligned_cols=194 Identities=23% Similarity=0.280 Sum_probs=171.5
Q ss_pred cCcchHHHHHhcCcHHHHHHHHhcChh-hhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHH-
Q 041966 69 KLETPVHEACREGRLHIVRLFLETDSW-VVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAA- 146 (280)
Q Consensus 69 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~- 146 (280)
.+.+++|.|+..++.+.++.+++.+.. .++..|..|.||||+|+..|+.+++++|++.+....+..+..|.|||++|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 346788889999999999998887653 366778899999999999999999999999877678888889999999998
Q ss_pred ----hcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhH
Q 041966 147 ----SAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNII 222 (280)
Q Consensus 147 ----~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 222 (280)
..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNV-QDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHH
T ss_pred HHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHCCCHHHH
Confidence 6678999999999998776 7788899999999999999999999999999876 789999999999999999999
Q ss_pred HHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcc
Q 041966 223 DEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264 (280)
Q Consensus 223 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 264 (280)
++|++..+.+++.+|..|.|||++|++.|+.+++++|+++..
T Consensus 233 ~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 999995457888899999999999999999999999998843
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=1e-33 Score=202.38 Aligned_cols=170 Identities=21% Similarity=0.200 Sum_probs=142.6
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q 041966 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~ 183 (280)
+.+|||.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence 35788888888888888888888776677778888899999999999999999999998887 78888999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
+.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.++..|.|||++|+..++.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999765 7889999999999999999999999987 677788899999999999999999999999995
Q ss_pred ccccccCCCCCCCCCC
Q 041966 264 NTTKLVNTPDNDGNTI 279 (280)
Q Consensus 264 ~~~~~~~~~d~~g~t~ 279 (280)
++ +..++..|.||
T Consensus 159 ~~---~~~~~~~~~~p 171 (172)
T 3v30_A 159 LK---LFQSNLVPADP 171 (172)
T ss_dssp HH---HSCC-------
T ss_pred HH---HhcccCCCCCC
Confidence 54 78888888887
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=219.54 Aligned_cols=193 Identities=22% Similarity=0.253 Sum_probs=176.8
Q ss_pred CCcchhHHHHhcCCHHHHHHHHHhChh-hhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHH-
Q 041966 35 SLNTVLHLAARYGHEELALEILKLCPE-MLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVAC- 112 (280)
Q Consensus 35 ~g~~~L~~A~~~g~~~~~~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~- 112 (280)
.+.+++|.|+..|+.+.++.++..+.+ .++..|..|.||||+|+..|+.+++++|++.|+...+..+..|.|||++|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 456889999999999999999988765 378999999999999999999999999999998778888999999999999
Q ss_pred ----hcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHH
Q 041966 113 ----ERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEIT 188 (280)
Q Consensus 113 ----~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~ 188 (280)
..++.+++++|++.+ ......+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHhhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCCCHHHH
Confidence 678899999999985 4455667789999999999999999999999999998 8899999999999999999999
Q ss_pred HHHHh-cCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcc
Q 041966 189 RELLK-MDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230 (280)
Q Consensus 189 ~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 230 (280)
++|++ .|++++. .+..|.||||+|+..|+.+++++|+++..
T Consensus 233 ~~Ll~~~gad~~~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 233 GLLLAVPSCDISL-TDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHTSTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHhcCCCCCcC-cCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 99999 8999865 89999999999999999999999998763
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=2.1e-33 Score=200.72 Aligned_cols=159 Identities=26% Similarity=0.293 Sum_probs=92.3
Q ss_pred cchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCc
Q 041966 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGR 116 (280)
Q Consensus 37 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~ 116 (280)
.+|||.|+..|+.+++++|++.++..++..+..|.||||+|+..|+.+++++|++.++ +.+..+..|.||||+|+..++
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA-DPHILAKERESALSLASTGGY 81 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CchhhcccCCCHHHHHHHCCC
Confidence 4677777777777777777777766666777777777777777777777777777666 344445555566666665555
Q ss_pred HHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCC
Q 041966 117 LDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDP 196 (280)
Q Consensus 117 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~ 196 (280)
.+++++|++++ ...+..+..|.||||+|+..++.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++++
T Consensus 82 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 82 TDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp HHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 55555555542 2233334444455555555555555555555554444 444444555555555555555555554444
Q ss_pred CC
Q 041966 197 DL 198 (280)
Q Consensus 197 ~~ 198 (280)
+.
T Consensus 160 ~~ 161 (172)
T 3v30_A 160 KL 161 (172)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.2e-32 Score=200.35 Aligned_cols=162 Identities=25% Similarity=0.296 Sum_probs=82.9
Q ss_pred hhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHH
Q 041966 63 LAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSL 142 (280)
Q Consensus 63 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l 142 (280)
++..|..|.||||+|+..|+.+++++|++.++ ..+..+..|. |||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~----------------------------------t~L 72 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDKDIEGS----------------------------------TAL 72 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC-CTTCCCTTSC----------------------------------CHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccccccccCc----------------------------------cHH
Confidence 34455555555555555555555555555544 2233333444 444
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhH
Q 041966 143 HVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNII 222 (280)
Q Consensus 143 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 222 (280)
|+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..++.+++
T Consensus 73 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v 150 (192)
T 2rfm_A 73 IWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIV 150 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHH
Confidence 44444444444444444444444 4444555555555555555555555555555433 445555555555555555555
Q ss_pred HHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 223 DEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 223 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
++|++.+ .+++.+|..|.||+++|+..++.+++++|++.
T Consensus 151 ~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 151 KKLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 5555544 34444555555555555555555555555554
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.9e-32 Score=199.25 Aligned_cols=143 Identities=29% Similarity=0.349 Sum_probs=132.8
Q ss_pred cccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhh
Q 041966 132 LEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLH 211 (280)
Q Consensus 132 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 211 (280)
+..+..|.||||+|+..|+.+++++|++.+++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHH
Confidence 4457788999999999999999999999999887 7889999999999999999999999999999865 8889999999
Q ss_pred hHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 212 WATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 212 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
+|+..++.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|++. |++++.+|..|+|||
T Consensus 107 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l 171 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLEL---GADISARDLTGLTAE 171 (192)
T ss_dssp HHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTTSCBHH
T ss_pred HHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHH
Confidence 999999999999999987 67788999999999999999999999999998 556999999999986
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=2.2e-32 Score=193.51 Aligned_cols=157 Identities=25% Similarity=0.320 Sum_probs=125.7
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q 041966 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~ 183 (280)
..|||+.|+..|+.+++++|++.+ ...+..+..|.||||+|+. ++.+++++|++.|++++ ..+..|.||||+|+..+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCC-CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcC
Confidence 447777777777777777777753 3445556777788888877 88888888888888877 67788888888888888
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
+.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+...++.++..|.||||+|+..++.+++++|+++|
T Consensus 82 ~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp CHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 88888888888888765 77888888888888888888888888886667778888888888888888888888888886
Q ss_pred c
Q 041966 264 N 264 (280)
Q Consensus 264 ~ 264 (280)
+
T Consensus 161 A 161 (162)
T 1ihb_A 161 A 161 (162)
T ss_dssp -
T ss_pred C
Confidence 5
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=2.8e-32 Score=192.98 Aligned_cols=157 Identities=22% Similarity=0.215 Sum_probs=88.9
Q ss_pred CcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcC
Q 041966 36 LNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERG 115 (280)
Q Consensus 36 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~ 115 (280)
..+|||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+. |+.+++++|++.++ +.+..+..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGA-NPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcC
Confidence 34666666666666666666666655 56666666666666666 66666666666665 34444555555666555555
Q ss_pred cHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcC
Q 041966 116 RLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195 (280)
Q Consensus 116 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~ 195 (280)
+.+++++|++++ .+.+..+..|.||||+|+..++.+++++|+++|++.....+..|.||||+|+..++.+++++|+++|
T Consensus 82 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 82 FLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 555555555543 2333444455555555555555555555555555432244555555555555555555555555555
Q ss_pred C
Q 041966 196 P 196 (280)
Q Consensus 196 ~ 196 (280)
+
T Consensus 161 A 161 (162)
T 1ihb_A 161 A 161 (162)
T ss_dssp -
T ss_pred C
Confidence 4
No 63
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=100.00 E-value=1.2e-34 Score=229.81 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=165.0
Q ss_pred CCCcchhHHHHhcCCHHHHHHHHHhChhh--hhcccccCcchHHHHHhcCcHHHHHHHHhcChhh--hhhhhhcCCCHHH
Q 041966 34 GSLNTVLHLAARYGHEELALEILKLCPEM--LAATNEKLETPVHEACREGRLHIVRLFLETDSWV--VHKMNRNKESALY 109 (280)
Q Consensus 34 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~t~l~ 109 (280)
..+.||||+|++.|+.+++++|++.+... ....+..|.||||+|+..|+.++|++|++.|++. .+..+.. .||||
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh 168 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR 168 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence 34569999999999999999999988731 1234556789999999999999999999999631 1222233 89999
Q ss_pred HHHhcCcHHHHHHHHcCCCcccc-ccccCCchHHHHHH-hcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHH
Q 041966 110 VACERGRLDVVKQLLNYPSVSLL-EMDDGLTTSLHVAA-SAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEI 187 (280)
Q Consensus 110 ~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~ 187 (280)
+|+..|+.+++++|++++..... ..+..|.||||+|+ ..|+.+++++|++.|. .|.|||++|+..|+.++
T Consensus 169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~ev 240 (376)
T 2aja_A 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYV 240 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTH
T ss_pred HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHH
Confidence 99999999999999998654332 26677899999999 9999999999998663 27899999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhh------------HHHHHHhcccc-------------------hhhh
Q 041966 188 TRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNI------------IDEILSVNLES-------------------SEIR 236 (280)
Q Consensus 188 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~------------~~~Ll~~~~~~-------------------~~~~ 236 (280)
+++|+++|+++.. . .++++.|+..|+.++ ++.|+..+... ....
T Consensus 241 v~lL~~~ga~~~~-~----~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~ 315 (376)
T 2aja_A 241 NPFIARHVNRLKE-M----HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315 (376)
T ss_dssp HHHHHHHHHHHHH-H----HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred HHHHHhcCccccc-c----cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCC
Confidence 9999999887532 1 135666666665553 22333322110 0112
Q ss_pred hhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCC
Q 041966 237 TLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTI 279 (280)
Q Consensus 237 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~ 279 (280)
...+.|||++|++.|+.+++++|++.+. .+|..|+||
T Consensus 316 ~n~~~~~L~~A~~~g~~e~v~lLl~~~~------v~~~~~~~~ 352 (376)
T 2aja_A 316 PGDANELLRLALRLGNQGACALLLSIPS------VLALTKANN 352 (376)
T ss_dssp TTCCCHHHHHHHHHTCTTHHHHHTTSHH------HHHSCC---
T ss_pred CCCccHHHHHHHHcCcHHHHHHHHcChH------HHHHHHHhc
Confidence 2356789999999999999999998743 345555554
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=100.00 E-value=8.9e-32 Score=193.50 Aligned_cols=168 Identities=20% Similarity=0.298 Sum_probs=127.7
Q ss_pred cCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhc
Q 041966 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSK 182 (280)
Q Consensus 103 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~ 182 (280)
.+.++|+.|+..|+.+++++|++.++...+..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHc
Confidence 456777777777777777777777666666777777788888888888888888888887776 6777788888888888
Q ss_pred CcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 183 GHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 183 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
++.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.||+++|+..++.+++++|++.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~ 160 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160 (179)
T ss_dssp TCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 888888888888887765 6778888888888888888888888776 56677788888888888888888888888887
Q ss_pred cccccccCCCCCCC
Q 041966 263 LNTTKLVNTPDNDG 276 (280)
Q Consensus 263 ~~~~~~~~~~d~~g 276 (280)
+++ ++..+.++
T Consensus 161 g~~---~~~~~~~~ 171 (179)
T 3f6q_A 161 GQN---LNRIPYKD 171 (179)
T ss_dssp TCC---CSCBCCCC
T ss_pred hcC---cccCCccc
Confidence 444 55555443
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=9e-32 Score=191.59 Aligned_cols=157 Identities=28% Similarity=0.376 Sum_probs=89.1
Q ss_pred CCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHh
Q 041966 34 GSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACE 113 (280)
Q Consensus 34 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 113 (280)
..+.++|+.|++.|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.++ ..+..+..|.||||+|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCCHHHHHHH
Confidence 3455677777777777777777776665 56666667777777777777777777776665 334445555555555555
Q ss_pred cCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHh
Q 041966 114 RGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193 (280)
Q Consensus 114 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~ 193 (280)
.|+.+++++|++++. ..+..+..|.||||+|+..++.+++++|+++|++++ ..+..|.||+++|+..++.+++++|++
T Consensus 90 ~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGA-DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 555555555555422 233334444455555555555555555555555444 444445555555555555555555544
Q ss_pred c
Q 041966 194 M 194 (280)
Q Consensus 194 ~ 194 (280)
.
T Consensus 168 ~ 168 (169)
T 2y1l_E 168 L 168 (169)
T ss_dssp C
T ss_pred c
Confidence 3
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=1.1e-31 Score=190.83 Aligned_cols=157 Identities=21% Similarity=0.239 Sum_probs=86.8
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q 041966 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~ 183 (280)
|.||||.|+..|+.+++++|++.+ ...+..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcC
Confidence 345555555555555555555442 2233444455555555555555555555555555554 44555556666666666
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
+.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.++..|.||+++|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 66666666665555543 4555566666666666666666666554 344555555666666666666666666666554
Q ss_pred c
Q 041966 264 N 264 (280)
Q Consensus 264 ~ 264 (280)
.
T Consensus 159 ~ 159 (167)
T 3v31_A 159 L 159 (167)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=7.8e-32 Score=191.65 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=96.5
Q ss_pred CcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcC
Q 041966 36 LNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERG 115 (280)
Q Consensus 36 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~ 115 (280)
|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.++ .
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~------------------- 61 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA-D------------------- 61 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C-------------------
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC-C-------------------
Confidence 44555555555555555555555544 45555555555555555555555555555544 2
Q ss_pred cHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcC
Q 041966 116 RLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMD 195 (280)
Q Consensus 116 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~ 195 (280)
....+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|
T Consensus 62 ---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 125 (167)
T 3v31_A 62 ---------------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESG 125 (167)
T ss_dssp ---------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ---------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 23334455566666666666666666666666665 56666777777777777777777777777
Q ss_pred CCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhc
Q 041966 196 PDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229 (280)
Q Consensus 196 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 229 (280)
++++. .+..|.||+|+|+..|+.+++++|++++
T Consensus 126 ~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 126 ADPTI-ETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 76644 6666777777777777777777777655
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.98 E-value=5.5e-32 Score=192.06 Aligned_cols=159 Identities=27% Similarity=0.341 Sum_probs=105.0
Q ss_pred hhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHH
Q 041966 101 NRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCS 180 (280)
Q Consensus 101 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~ 180 (280)
+..+.|||+.|+..|+.+++++|++..+......+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHHH
Confidence 34455666666666666666666665555555555566666777766666777777777666665 56666777777777
Q ss_pred hcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHH
Q 041966 181 SKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLM 260 (280)
Q Consensus 181 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll 260 (280)
..++.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.||+++|++ ++.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 77777777777777776654 5666777777777777777777777665 4556666777777777555 6667777776
Q ss_pred Hhc
Q 041966 261 ETL 263 (280)
Q Consensus 261 ~~~ 263 (280)
+.|
T Consensus 161 ~~g 163 (165)
T 3twr_A 161 GDA 163 (165)
T ss_dssp TC-
T ss_pred hcc
Confidence 654
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.98 E-value=2.2e-31 Score=189.54 Aligned_cols=155 Identities=33% Similarity=0.456 Sum_probs=99.0
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q 041966 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~ 183 (280)
+.++++.|+..|+.+++++|++.+ .+.+..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..+
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcC
Confidence 345555555555555555555543 2333445555666666666666666666666666665 55666667777777777
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
+.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.|||++|++.++.+++++|++.
T Consensus 92 ~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp CHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 77777777776666554 5666677777777777777777777665 45556666677777777777777777777665
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.98 E-value=2.9e-35 Score=219.35 Aligned_cols=183 Identities=15% Similarity=0.114 Sum_probs=85.4
Q ss_pred CCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhc
Q 041966 35 SLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACER 114 (280)
Q Consensus 35 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~ 114 (280)
.+.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+ +++..|..|.||||+|+..
T Consensus 20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-~~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 20 NPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGA-NVNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHT
T ss_pred chhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHc
Confidence 344555555555555555555555554 45555555555555555555555555555554 3334444555555555555
Q ss_pred CcHHHHHHHHcCCCccccccccCCchHHHHH--HhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHH
Q 041966 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVA--ASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192 (280)
Q Consensus 115 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll 192 (280)
|+.+++++|++.+.......+..|.|||++| +..++.+++++|++.|++++ ..+..|.++++.++..... ++|+
T Consensus 98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~~l~~~~~~~~~---~~ll 173 (229)
T 2vge_A 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG-LMNSGAVYALWDYSAEFGD---ELSF 173 (229)
T ss_dssp TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT-TSGGGEEEESSCBCCSSTT---BCCB
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc-cccCCchHHHHHHhhcccc---ccCc
Confidence 5555555555443332222223444444444 44444444444444444444 3344444444432222211 2334
Q ss_pred hcCCCCC-CCCCCCCCChhhhHhhcCChhhHH
Q 041966 193 KMDPDLS-SSQDNEGRTPLHWATIKGRVNIID 223 (280)
Q Consensus 193 ~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~ 223 (280)
+.|+++. ...+..|.||||+|+..|+.++++
T Consensus 174 ~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp CTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred cccccccccccCCCcccHHHHHHHcCCcceee
Confidence 4444310 113444444444444444444443
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=2.5e-31 Score=186.87 Aligned_cols=154 Identities=23% Similarity=0.311 Sum_probs=129.4
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q 041966 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~ 183 (280)
+.|||++|+..|+.+++++|++..+......+..|.||||+ +..|+.+++++|++.|++++ ..+..|.||||+|+..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence 34788888888888888888877544666677788888888 88888888888888888887 77888889999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++. .+++.+|..|.|||++|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999998888765 788888999999999999999988887 57777888899999999999999999998875
No 72
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=6.2e-34 Score=225.66 Aligned_cols=242 Identities=16% Similarity=0.137 Sum_probs=164.4
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHH-hhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhh--hhcccccCcchHHHHHh
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEII-KQTVPGSLNTVLHLAARYGHEELALEILKLCPEM--LAATNEKLETPVHEACR 79 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~-~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~g~t~L~~A~~ 79 (280)
.+|+.|++.|+.+.++.|++.+.... ....+..|.||||+|+..|+.+++++|++++++. .+..+.. .||||+|+.
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~ 172 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAE 172 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHH
Confidence 57999999999999999999876210 0122345678999999999999999999999641 1222233 899999999
Q ss_pred cCcHHHHHHHHhcChhhhh-hhhhcCCCHHHHHH-hcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHH
Q 041966 80 EGRLHIVRLFLETDSWVVH-KMNRNKESALYVAC-ERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNEL 157 (280)
Q Consensus 80 ~~~~~~v~~Ll~~~~~~~~-~~~~~~~t~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 157 (280)
.|+.++|++|++.|++... ..+..|.||||+|+ ..|+.+++++|++.+. .+.|||+.|+..|+.+++++|
T Consensus 173 ~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL 244 (376)
T 2aja_A 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFI 244 (376)
T ss_dssp TTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHH
T ss_pred CCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHH
Confidence 9999999999999994332 27888999999999 9999999999999642 268999999999999999999
Q ss_pred HHhCCCCccCCCCCCCcHHHHHHh---------------------------cCcHHHHHHHHhcCCCC----CCCCCCCC
Q 041966 158 LEARPEFTWKKDPNGRTPLTLCSS---------------------------KGHLEITRELLKMDPDL----SSSQDNEG 206 (280)
Q Consensus 158 l~~~~~~~~~~~~~g~~~l~~a~~---------------------------~~~~~~~~~Ll~~~~~~----~~~~~~~g 206 (280)
++.|+++. ..+ ++++.|+. .+..+.+++|++.+..- .......+
T Consensus 245 ~~~ga~~~-~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~ 319 (376)
T 2aja_A 245 ARHVNRLK-EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 319 (376)
T ss_dssp HHHHHHHH-HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred HhcCcccc-ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCc
Confidence 99887653 111 12222222 23345666666533210 01122346
Q ss_pred CChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 207 RTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 207 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
.+|||+|+..|+.+++++|++.+ .+++..++|++.+|...|+.++.+.-+++
T Consensus 320 ~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 320 NELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp CHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC----------------------
T ss_pred cHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHHHHHHHH
Confidence 68999999999999999999865 67888999999999999999998876554
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=2.5e-31 Score=191.16 Aligned_cols=163 Identities=21% Similarity=0.313 Sum_probs=115.8
Q ss_pred CCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhc
Q 041966 35 SLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACER 114 (280)
Q Consensus 35 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~ 114 (280)
.+.++|+.|+..|+.+++++|++.++..++..+..|.||||+|+..|+.+++++|++.++ +++..+..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHc
Confidence 456778888888888888888887666677777788888888888888888888888776 4555666777777777777
Q ss_pred CcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhc
Q 041966 115 GRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194 (280)
Q Consensus 115 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~ 194 (280)
|+.+++++|++++ .+.+..+..|.||||+|+..++.+++++|+++|++++ ..+..|.||+++|+..++.+++++|+++
T Consensus 83 ~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~~~~L~~~ 160 (179)
T 3f6q_A 83 GHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKAKAPLRELLRERAEKM 160 (179)
T ss_dssp TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 7777777777763 3444555666677777777777777777777777665 5666777777777777777777777777
Q ss_pred CCCCCC
Q 041966 195 DPDLSS 200 (280)
Q Consensus 195 ~~~~~~ 200 (280)
|++++.
T Consensus 161 g~~~~~ 166 (179)
T 3f6q_A 161 GQNLNR 166 (179)
T ss_dssp TCCCSC
T ss_pred hcCccc
Confidence 766554
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.7e-35 Score=217.35 Aligned_cols=203 Identities=15% Similarity=0.059 Sum_probs=164.1
Q ss_pred HHHHHHhChhh--hhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCc
Q 041966 52 ALEILKLCPEM--LAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSV 129 (280)
Q Consensus 52 ~~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~ 129 (280)
++.|++++.+. .+..+..+.||||+|+..|+.+++++|++.|+ +++..|..|.||||+|+..|+.+++++|++.+ .
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a 78 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAG-A 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-C
Confidence 35677777652 23445667789999999999999999999998 66778899999999999999999999999984 4
Q ss_pred cccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHH--HhcCcHHHHHHHHhcCCCCCCCCCCCCC
Q 041966 130 SLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLC--SSKGHLEITRELLKMDPDLSSSQDNEGR 207 (280)
Q Consensus 130 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 207 (280)
+.+..+..|.||||+|+..|+.+++++|++.|++++...+..|.||||+| +..++.+++++|+++|++++. .+..|.
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~-~~~~~~ 157 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL-MNSGAV 157 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT-SGGGEE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc-ccCCch
Confidence 56677889999999999999999999999999999844457999999999 999999999999999999876 788888
Q ss_pred ChhhhHhhcCChhhHHHHHHhccc-chhhhhhcCCchHHHHHhcCcHHHHHHHH
Q 041966 208 TPLHWATIKGRVNIIDEILSVNLE-SSEIRTLHGETVLHLGVKNNQYEAVKHLM 260 (280)
Q Consensus 208 t~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll 260 (280)
+|++.++..... ++|++.+.. .++.+|..|+||||+|+..|+.++++.++
T Consensus 158 ~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 158 YALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp EESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred HHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 999876655443 355666532 25678889999999999999999887643
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=4.3e-31 Score=187.42 Aligned_cols=159 Identities=26% Similarity=0.342 Sum_probs=112.2
Q ss_pred cccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHH
Q 041966 67 NEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAA 146 (280)
Q Consensus 67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~ 146 (280)
+..|.|||+.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+ ...+..+..|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHHH
Confidence 4455666666666666666666666554455555556666666666666666666666653 334455666777777777
Q ss_pred hcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHH
Q 041966 147 SAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEIL 226 (280)
Q Consensus 147 ~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll 226 (280)
..++.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||+|+|+. ++.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCChhHhHhc-CChHHHHHHh
Confidence 7777888888888887776 6777888888888888888888888888888655 77888888888766 7778888887
Q ss_pred Hhc
Q 041966 227 SVN 229 (280)
Q Consensus 227 ~~~ 229 (280)
+.+
T Consensus 161 ~~g 163 (165)
T 3twr_A 161 GDA 163 (165)
T ss_dssp TC-
T ss_pred hcc
Confidence 765
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=7.2e-31 Score=183.87 Aligned_cols=149 Identities=26% Similarity=0.356 Sum_probs=81.9
Q ss_pred CHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcH
Q 041966 106 SALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHL 185 (280)
Q Consensus 106 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~ 185 (280)
++|+.|+..|+.+++++|++.+.... .+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcChH
Confidence 44555555555555555554433211 23444555555555555555555555555554 4555555666666666666
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHH
Q 041966 186 EITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259 (280)
Q Consensus 186 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 259 (280)
+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.++..|.|||++|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 666666666555543 4555666666666666666666666554 34455555666666666666666666554
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.7e-30 Score=181.91 Aligned_cols=149 Identities=26% Similarity=0.301 Sum_probs=79.9
Q ss_pred chHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCH
Q 041966 72 TPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 151 (280)
Q Consensus 72 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~ 151 (280)
+||+.|+..|+.+++++|++.+... . .+..|.||||+|+..|+.+++++|++.+ ......+..|.||||+|+..++.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcChH
Confidence 4444444444444444444444421 1 2344444444444444444444444432 22333344455555555555555
Q ss_pred HHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHH
Q 041966 152 EIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEI 225 (280)
Q Consensus 152 ~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 225 (280)
+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||+|+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHh
Confidence 66666666555555 5556666666666666666666666666666543 555666666666666666666554
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=2.7e-30 Score=181.58 Aligned_cols=151 Identities=22% Similarity=0.214 Sum_probs=78.0
Q ss_pred cchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCc
Q 041966 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGR 116 (280)
Q Consensus 37 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~ 116 (280)
.++||.|+..|+.+++++|++..+..++..+..|.||||+ +..|+.+++++|++.|+ +.+..+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGA-SPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCc
Confidence 4566666666666666666666322355566666666666 66666666666666655 334444455555555555555
Q ss_pred HHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHH
Q 041966 117 LDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELL 192 (280)
Q Consensus 117 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll 192 (280)
.+++++|++.+ .+.+..+..|.||||+|+..|+.+++++|++. ++++ ..+..|.||||+|+..++.+++++|+
T Consensus 81 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 81 LDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp HHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 55555555442 22333334444444444444444444444444 3333 34444444444444444444444444
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=2.6e-30 Score=194.30 Aligned_cols=178 Identities=18% Similarity=0.143 Sum_probs=102.1
Q ss_pred cCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhc
Q 041966 69 KLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASA 148 (280)
Q Consensus 69 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~ 148 (280)
.|.||||.|+..++.+.++.|++.|++. +. +..|.||||+|+..|+.+++++|++.+. +.+..+..|.||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHc
Confidence 4667777777777777777777776633 22 3556677777777777777777777644 4555566777777777777
Q ss_pred CCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCC-ChhhhH--hhcCChhhHHHH
Q 041966 149 GHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGR-TPLHWA--TIKGRVNIIDEI 225 (280)
Q Consensus 149 ~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~~L 225 (280)
|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|. ||+|+| +..|+.+++++|
T Consensus 81 g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA-MTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp TCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce-ecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 77777777777777776 6777777888888877888888888888777765 444444 788877 667777788877
Q ss_pred HHhcccchhhh---------hhcCCchHHHHHhcCc
Q 041966 226 LSVNLESSEIR---------TLHGETVLHLGVKNNQ 252 (280)
Q Consensus 226 l~~~~~~~~~~---------~~~g~t~l~~a~~~~~ 252 (280)
++.+. +.+.. +..+.++++++.+.|.
T Consensus 159 l~~~a-~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 159 YGVQE-KMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHH-HTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHhhh-cccccccceEEEEeccCCCCCCcccccCCC
Confidence 77663 33332 4456677777766654
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=6.5e-30 Score=192.08 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=116.3
Q ss_pred hcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHh
Q 041966 102 RNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSS 181 (280)
Q Consensus 102 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~ 181 (280)
..|.|||+.|++.++.+.++.|++++..... +..+.||||.|+..|+.+++++|++.|++++ ..+..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence 4689999999999999999999998655432 3667899999999999999999999999987 889999999999999
Q ss_pred cCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCC-chHHHH--HhcCcHHHHHH
Q 041966 182 KGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGE-TVLHLG--VKNNQYEAVKH 258 (280)
Q Consensus 182 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~~ 258 (280)
.|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+ .+++.++..|. ||||+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 9999999999999999876 8899999999999999999999999998 56677777776 999999 78899999999
Q ss_pred HHHhccc
Q 041966 259 LMETLNT 265 (280)
Q Consensus 259 Ll~~~~~ 265 (280)
|++.+++
T Consensus 158 Ll~~~a~ 164 (239)
T 1ycs_B 158 LYGVQEK 164 (239)
T ss_dssp HHHHHHH
T ss_pred HHHhhhc
Confidence 9999665
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=8.8e-29 Score=177.96 Aligned_cols=163 Identities=13% Similarity=0.057 Sum_probs=129.6
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCH----HHHHHHHHhCCCCccCCCCCCCcHHHHH
Q 041966 104 KESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL----EIVNELLEARPEFTWKKDPNGRTPLTLC 179 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~g~~~l~~a 179 (280)
+.++|+.|++.|+.+.++.++..+. ....+..|.||||+|+..++. +++++|+++|++++ ..+..|.||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHHHH
Confidence 4567777888888777777776432 222225677888888887764 58999999999998 7889999999999
Q ss_pred HhcCc------HHHHHHHHhcCCCCCCCCCCCCC-ChhhhHhhcC-----ChhhHHHHHH-hcccchhhhhhcCCchHHH
Q 041966 180 SSKGH------LEITRELLKMDPDLSSSQDNEGR-TPLHWATIKG-----RVNIIDEILS-VNLESSEIRTLHGETVLHL 246 (280)
Q Consensus 180 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~ 246 (280)
+..++ .+++++|+++|++++. .+..|. ||||+|+..+ ..+++++|++ .+ .+++.+|..|.||||+
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~-~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~ 160 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITA-LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEF 160 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSS-CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCc-cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHH
Confidence 98776 5789999999999876 889999 9999999844 3468899998 55 7888999999999999
Q ss_pred HHhcCcHHHHHHHHHhcccccccCCCCC
Q 041966 247 GVKNNQYEAVKHLMETLNTTKLVNTPDN 274 (280)
Q Consensus 247 a~~~~~~~~~~~Ll~~~~~~~~~~~~d~ 274 (280)
|++.++.+++++|.+.... .+.+|+
T Consensus 161 A~~~~~~~~v~~L~~~~~~---~~~~~~ 185 (186)
T 3t8k_A 161 VKRCQKPIALKMMEDYIKK---YNLKEN 185 (186)
T ss_dssp HHTTTCHHHHHHHHHHHHH---HTCCC-
T ss_pred HHHcCCHHHHHHHHHHHHH---HhcccC
Confidence 9999999999999988654 555543
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=7.1e-29 Score=174.18 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=105.6
Q ss_pred cccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCC-hhhh
Q 041966 134 MDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRT-PLHW 212 (280)
Q Consensus 134 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t-~l~~ 212 (280)
.+..+.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+ .++.+++++|+++|++++. .+..|.| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHH
Confidence 45667788888888888888888888888887 77888889998874 8888899999988888765 7888888 9999
Q ss_pred HhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 213 ATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 213 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
|+..|+.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|+++ |++++.+|..|+||.
T Consensus 85 A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAA---AGGTRGSNHARIDAA 148 (156)
T ss_dssp HHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC---C--------------
T ss_pred HHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc---CCCCCccCcCcCccc
Confidence 99999999999888887 56777888889999999999999999999887 455888888888873
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=2.1e-28 Score=167.72 Aligned_cols=133 Identities=19% Similarity=0.259 Sum_probs=116.0
Q ss_pred CccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCC-C
Q 041966 128 SVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNE-G 206 (280)
Q Consensus 128 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-g 206 (280)
+...+..+..+.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+. ++.+++++|+++|++++. .+.. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~~g 78 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC-ADPATL 78 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-CBTTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-cCCCCC
Confidence 34556677888899999999999999999999998887 778889999999999 999999999999998766 7777 8
Q ss_pred CChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcc
Q 041966 207 RTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264 (280)
Q Consensus 207 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 264 (280)
.||||+|+..++.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|+++|+
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999999887 5677888899999999999999999999998865
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=8.5e-28 Score=164.69 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=36.4
Q ss_pred CchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCC-CCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhc
Q 041966 138 LTTSLHVAASAGHLEIVNELLEARPEFTWKKDPN-GRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIK 216 (280)
Q Consensus 138 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~ 216 (280)
|.||||+|+. ++.+++++|+++|++++ ..+.. |.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..
T Consensus 45 g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~ 121 (136)
T 1d9s_A 45 GRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-CDAWGRLPVDLAEEQ 121 (136)
T ss_dssp CCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCC-CSSSSSCHHHHHHHH
T ss_pred CCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHc
Confidence 3334444443 44444444444444433 33333 44444444444444444444444444332 334444444444444
Q ss_pred CChhhHHHHHHh
Q 041966 217 GRVNIIDEILSV 228 (280)
Q Consensus 217 ~~~~~~~~Ll~~ 228 (280)
++.+++++|++.
T Consensus 122 ~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 122 GHRDIARYLHAA 133 (136)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 444444444443
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=8.2e-27 Score=159.78 Aligned_cols=127 Identities=30% Similarity=0.415 Sum_probs=110.9
Q ss_pred cccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhH
Q 041966 134 MDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWA 213 (280)
Q Consensus 134 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a 213 (280)
....+.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A 87 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIGFTPLHLA 87 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHH
Confidence 34556789999999999999999999999887 7888899999999999999999999999998765 788899999999
Q ss_pred hhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 214 TIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 214 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
+..++.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|++.|
T Consensus 88 ~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999887 567788889999999999999999999998864
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=2.4e-26 Score=155.42 Aligned_cols=125 Identities=41% Similarity=0.658 Sum_probs=108.7
Q ss_pred CCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhc
Q 041966 137 GLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIK 216 (280)
Q Consensus 137 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~ 216 (280)
.|.||||.|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|++.|++++. .+..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHc
Confidence 36789999999999999999999888887 7788889999999999999999999999888765 788889999999999
Q ss_pred CChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcc
Q 041966 217 GRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264 (280)
Q Consensus 217 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 264 (280)
++.+++++|++.+ .+++.+|..|.|||++|+..++.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 9999999999887 5677788889999999999999999999998865
No 87
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=2.7e-27 Score=166.11 Aligned_cols=141 Identities=23% Similarity=0.233 Sum_probs=64.8
Q ss_pred ccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCch-HHHH
Q 041966 66 TNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTT-SLHV 144 (280)
Q Consensus 66 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~l~~ 144 (280)
.+..|.||||+|+..|+.+++++|++.++ .++..+..|.||||+|+ .|+.+++++|++.+ ...+..+..|.| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGA-NPNAPNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTC-CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHH
Confidence 33444555555555555555555555544 33334444555555442 44455555555442 223333444444 5555
Q ss_pred HHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhh
Q 041966 145 AASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLH 211 (280)
Q Consensus 145 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 211 (280)
|+..++.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~~~ 149 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG-SNHARIDAAE 149 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc-cCcCcCcccc
Confidence 555555555555555555555 4555556666666655666666666665555443 4555555544
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=4.4e-27 Score=169.07 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=111.0
Q ss_pred cchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcH----HHHHHHHhcChhhhhhhhhcCCCHHHHHH
Q 041966 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRL----HIVRLFLETDSWVVHKMNRNKESALYVAC 112 (280)
Q Consensus 37 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~ 112 (280)
.++|+.|++.|+.+.++.++..+... ..+..|+||||+|+..++. +++++|++.|+ +++..+..|.||||+|+
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga-dvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGA-DIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC-CSSCCCTTCCCTHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC-CCCCCCCCCCcHHHHHH
Confidence 45666666666666666666554321 1124566666666666643 36666666666 44455566666666666
Q ss_pred hcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCC-cHHHHHHhcC-----cHH
Q 041966 113 ERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGR-TPLTLCSSKG-----HLE 186 (280)
Q Consensus 113 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~-~~l~~a~~~~-----~~~ 186 (280)
..++.++.. ..+++++|+++|++++ ..+..|. ||||+|+..+ ..+
T Consensus 84 ~~~~~~~~~----------------------------~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~ 134 (186)
T 3t8k_A 84 QGGGNDITG----------------------------TTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIP 134 (186)
T ss_dssp HHCTTCHHH----------------------------HHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHH
T ss_pred HcCCcchhh----------------------------HHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHH
Confidence 555432211 1478899999999988 7888888 9999998843 456
Q ss_pred HHHHHHh-cCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhc
Q 041966 187 ITRELLK-MDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229 (280)
Q Consensus 187 ~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 229 (280)
++++|++ +|++++. .|..|.||||+|+..++.+++++|.+..
T Consensus 135 iv~~Ll~~~gad~~~-~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 135 LYKLIFSQSGLQLLI-KDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp HHHHHHTSTTCCTTC-CCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 8899999 8999765 8899999999999999999999888765
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.1e-25 Score=152.13 Aligned_cols=57 Identities=40% Similarity=0.584 Sum_probs=23.9
Q ss_pred CcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcC
Q 041966 36 LNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETD 93 (280)
Q Consensus 36 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 93 (280)
|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|++.+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 58 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence 33444444444444444444444333 3333444444444444444444444444433
No 90
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.94 E-value=2.4e-27 Score=178.43 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=122.9
Q ss_pred CcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcC
Q 041966 70 LETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG 149 (280)
Q Consensus 70 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~ 149 (280)
+.+++.+++..|+.+.+..+...+. ..+..|.||||+|+..|+.+++++|++ +.+.+..+..|.||||+|+..|
T Consensus 15 ~~~~~l~~~~~g~~~~~~~~~~~~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g 88 (244)
T 3ui2_A 15 GAMEYLIEWKDGHSPSWVPSSYIAA----DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLG 88 (244)
T ss_dssp TEEEEEEEESSCCCCEEEEGGGSCH----HHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHT
T ss_pred CccHHHHHHHcCCCccccccccccc----ccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCC
Confidence 3455555555555555544433333 223566778888888888888888877 3455666777888888888888
Q ss_pred CHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhc
Q 041966 150 HLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229 (280)
Q Consensus 150 ~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 229 (280)
+.+++++|+++|++++...+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..+.
T Consensus 89 ~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~~----------- 156 (244)
T 3ui2_A 89 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREILK----------- 156 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHHT-----------
T ss_pred CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHHHh-----------
Confidence 888888888888888733337788888888888888888888888888765 78888888888875221
Q ss_pred ccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhc
Q 041966 230 LESSEIRTLHGETVLHLGVKNNQYEAVKHLMETL 263 (280)
Q Consensus 230 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 263 (280)
...+.|||++|+..|+.+++++|++.+
T Consensus 157 -------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 157 -------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp -------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 235688888888888888888888764
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=1.1e-25 Score=154.07 Aligned_cols=55 Identities=27% Similarity=0.316 Sum_probs=21.6
Q ss_pred chhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcC
Q 041966 38 TVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETD 93 (280)
Q Consensus 38 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 93 (280)
||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+
T Consensus 16 t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 70 (136)
T 2jab_A 16 KKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 344444444444444444433333 3333333334444444333333333333333
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=1.7e-25 Score=161.06 Aligned_cols=142 Identities=19% Similarity=0.239 Sum_probs=118.4
Q ss_pred hhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHH
Q 041966 100 MNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLC 179 (280)
Q Consensus 100 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a 179 (280)
.+..|.||||+|+..|+.+++++|++ +...+..+..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 35677888888888888888888888 4456667788889999999999999999999999998733338899999999
Q ss_pred HhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHH
Q 041966 180 SSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHL 259 (280)
Q Consensus 180 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 259 (280)
+..++.+++++|+++|++++. .+..|.||||+|+..++. ..+.++|++|++.|+.+++++|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEV-EDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCCcC-CCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence 999999999999999999765 888999999999864322 3467899999999999999999
Q ss_pred HHh
Q 041966 260 MET 262 (280)
Q Consensus 260 l~~ 262 (280)
.++
T Consensus 179 ~~~ 181 (183)
T 3deo_A 179 EGQ 181 (183)
T ss_dssp HTC
T ss_pred HHh
Confidence 765
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=7.3e-26 Score=155.31 Aligned_cols=127 Identities=24% Similarity=0.301 Sum_probs=89.3
Q ss_pred ccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhh
Q 041966 133 EMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHW 212 (280)
Q Consensus 133 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 212 (280)
..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-cCCCCCCHHHH
Confidence 345666777777777777777777777777766 6667777777777777777777777777777654 66677777777
Q ss_pred HhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 213 ATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 213 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
|+..++.+++++|++.+ .+++.+|..|.||+++|+..+..+++++|.+.
T Consensus 83 A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 77777777777777765 45666777777777777777777776666554
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=1.1e-26 Score=174.87 Aligned_cols=171 Identities=21% Similarity=0.212 Sum_probs=122.5
Q ss_pred CCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHh
Q 041966 34 GSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACE 113 (280)
Q Consensus 34 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 113 (280)
..+.+++..++..|+.+.+..+...+.+ .+..|.||||+|+..|+.+++++|++ +. +++..|..|.||||+|+.
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~ 86 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVAG 86 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHH----HHHHHHHHHHHHHTTTCHHHHHHTTT-TC-CTTCBCTTSCBHHHHHHH
T ss_pred CCCccHHHHHHHcCCCcccccccccccc----cccCCCCHHHHHHHcCCHHHHHHHHc-CC-CCCCcCCCCCCHHHHHHH
Confidence 3455666666666666555444433333 23556788888888888888888888 55 556677778888888888
Q ss_pred cCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHh
Q 041966 114 RGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193 (280)
Q Consensus 114 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~ 193 (280)
.|+.+++++|++++.......+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..+
T Consensus 87 ~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~---------- 155 (244)
T 3ui2_A 87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREIL---------- 155 (244)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHH----------
T ss_pred CCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHH----------
Confidence 8888888888887554444444678888888888888888888888888887 77888888888887421
Q ss_pred cCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhc
Q 041966 194 MDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229 (280)
Q Consensus 194 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 229 (280)
....+.+||++|+..|+.+++++|++..
T Consensus 156 --------~~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 156 --------KTTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp --------TTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 1234668888888888888888888753
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=5.4e-25 Score=158.48 Aligned_cols=141 Identities=23% Similarity=0.245 Sum_probs=98.2
Q ss_pred cccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHH
Q 041966 67 NEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAA 146 (280)
Q Consensus 67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~ 146 (280)
+..|.||||+|+..|+.+++++|++ +. +.+..|..|.||||+|+..|+.+++++|++++.......+..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3456677777777777777777777 54 455566777777777777777777777777654433333366777888888
Q ss_pred hcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHH
Q 041966 147 SAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEIL 226 (280)
Q Consensus 147 ~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll 226 (280)
..++.+++++|+++|++++ ..+..|.||||+|+..++. ..+.+++++|+..|..+++++|.
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHH
Confidence 8888888888888887776 6777788888877753322 23457888888888888887776
Q ss_pred Hh
Q 041966 227 SV 228 (280)
Q Consensus 227 ~~ 228 (280)
++
T Consensus 180 ~~ 181 (183)
T 3deo_A 180 GQ 181 (183)
T ss_dssp TC
T ss_pred Hh
Confidence 53
No 96
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.92 E-value=1.3e-23 Score=160.82 Aligned_cols=196 Identities=15% Similarity=0.072 Sum_probs=146.5
Q ss_pred cccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHH
Q 041966 65 ATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHV 144 (280)
Q Consensus 65 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~ 144 (280)
..|..+.+.++.+...|+..+.+++-..-..........+... ......-..+++................++|+.
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 3567788899999999998777765443221100000011111 111122222344333222222223334579999
Q ss_pred HHhcCCHHHHHHHHHhCCCCcc-----CCCCCCCcHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhc
Q 041966 145 AASAGHLEIVNELLEARPEFTW-----KKDPNGRTPLTLCSSK---GHLEITRELLKMDPDLSSSQDNEGRTPLHWATIK 216 (280)
Q Consensus 145 a~~~~~~~~~~~ll~~~~~~~~-----~~~~~g~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~ 216 (280)
|+..++.+.++.+++.|.++.. ..+..|.||||+|+.. ++.+++++|+++|++++. .+..|.||||+|+..
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~-~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLT 215 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHHHHHHHT
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc-cCCCCCCHHHHHHHc
Confidence 9999999999999999998642 3478899999999998 899999999999999876 899999999999999
Q ss_pred CChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccc
Q 041966 217 GRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTT 266 (280)
Q Consensus 217 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~ 266 (280)
|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.++..
T Consensus 216 g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 216 DNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999987 678899999999999999999999999999998753
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=1.4e-24 Score=146.06 Aligned_cols=118 Identities=22% Similarity=0.288 Sum_probs=90.7
Q ss_pred ccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHh
Q 041966 135 DDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214 (280)
Q Consensus 135 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~ 214 (280)
+..+.+|||+|+..|+.+++++|++.+++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHH
Confidence 3456678888888888888888888888776 6777888888888888888888888888888765 7778888888888
Q ss_pred hcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHH
Q 041966 215 IKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEA 255 (280)
Q Consensus 215 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 255 (280)
..++.+++++|++.+ .+++.+|..|.||+++|...+..++
T Consensus 82 ~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred HcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 888888888888876 5667788888888888854444333
No 98
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=1e-24 Score=149.50 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=89.1
Q ss_pred hhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHH
Q 041966 100 MNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLC 179 (280)
Q Consensus 100 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a 179 (280)
.|..|.||||+|+..|+.+++++|++.+ ......+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A 83 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHDA 83 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCCHHHHH
Confidence 4556666666666666666666666653 3344555667777777777777777777777777776 6777788888888
Q ss_pred HhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhc
Q 041966 180 SSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVN 229 (280)
Q Consensus 180 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 229 (280)
+..++.+++++|+++|++++. .+..|.||+++|+..+..+++++|.+..
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 888888888888888887654 7778888888888777777776665543
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=7.4e-25 Score=162.78 Aligned_cols=128 Identities=24% Similarity=0.358 Sum_probs=83.4
Q ss_pred ccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhc-CCCCCCCCCCCCCChhhhH
Q 041966 135 DDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM-DPDLSSSQDNEGRTPLHWA 213 (280)
Q Consensus 135 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a 213 (280)
+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|++. |++++. .+..|.||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~-~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC-CCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc-cCCCCCCHHHHH
Confidence 3445667777777777777777777776665 5666777777777777777777777776 666554 666777777777
Q ss_pred hhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhccc
Q 041966 214 TIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNT 265 (280)
Q Consensus 214 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 265 (280)
+..|+.+++++|++.+ .+++.+|..|.|||++|+..++.++++.|++.++.
T Consensus 148 ~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp HHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred HHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 7777777777777765 45566677777777777777777777777666443
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=165.80 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=60.9
Q ss_pred hHHHHHHhcCCHHHHHHHHHhCCCCccC-----CCCCCCcHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCChhh
Q 041966 140 TSLHVAASAGHLEIVNELLEARPEFTWK-----KDPNGRTPLTLCSSK---GHLEITRELLKMDPDLSSSQDNEGRTPLH 211 (280)
Q Consensus 140 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~-----~~~~g~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 211 (280)
++|+.|+..++.+.++.|++.|++++.. .+..|.||||+|+.. ++.+++++|+++|++++. .+..|.||||
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~-~d~~G~TpLh 231 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGNTALH 231 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC-CCTTCCCHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC-CCCCCCCHHH
Confidence 4555555555555555555555544411 344455555555543 445555555555555433 4445555555
Q ss_pred hHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcc
Q 041966 212 WATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264 (280)
Q Consensus 212 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 264 (280)
+|+..|+.+++++|++.+ .+++.+|..|.|||++|+..++.+++++|++.++
T Consensus 232 ~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 232 YAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 555555555555555544 3444445555555555555555555555555433
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=1e-24 Score=162.07 Aligned_cols=133 Identities=25% Similarity=0.388 Sum_probs=74.2
Q ss_pred hcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHH
Q 041966 64 AATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLH 143 (280)
Q Consensus 64 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~ 143 (280)
...+..|.||||+|+..|+.+++++|++.++ .++..+..|.||||+|+..|+.+++++|++..+...+..+..|.||||
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred cccccccccccccccccCcHHHHHHHHhCCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence 3344555666666666666666666666655 344455566666666666666666666666544445555555566666
Q ss_pred HHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCC
Q 041966 144 VAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDL 198 (280)
Q Consensus 144 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~ 198 (280)
+|+..|+.+++++|+++|++++ ..+..|.|||++|+..+..++++.|+..++..
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred HHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 6666666666666666666655 55556666666666666666666666555543
No 102
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.90 E-value=2.2e-23 Score=164.74 Aligned_cols=141 Identities=20% Similarity=0.221 Sum_probs=113.8
Q ss_pred CCchHHHHHHhc-CCHHHHHHHHHhCCCCccCCC--CCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhH
Q 041966 137 GLTTSLHVAASA-GHLEIVNELLEARPEFTWKKD--PNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWA 213 (280)
Q Consensus 137 ~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~--~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a 213 (280)
.+.++||.|+.. ++.+++++|++.|++++ ..+ ..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHH
Confidence 345799999999 99999999999999988 555 7899999999999999999999999999875 889999999999
Q ss_pred hhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcccccccCCCCCCCCCCC
Q 041966 214 TIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTIL 280 (280)
Q Consensus 214 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 280 (280)
+..|+.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|++.+.........+..|.|+|
T Consensus 276 ~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l 341 (368)
T 3jue_A 276 TILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYL 341 (368)
T ss_dssp HHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------
T ss_pred HHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence 9999999999999987 67788999999999999999999999999998876666666667777764
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=160.83 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=119.3
Q ss_pred CCHHHHHHhcCcHHHHHHHHcCCCccccc-----cccCCchHHHHHHhc---CCHHHHHHHHHhCCCCccCCCCCCCcHH
Q 041966 105 ESALYVACERGRLDVVKQLLNYPSVSLLE-----MDDGLTTSLHVAASA---GHLEIVNELLEARPEFTWKKDPNGRTPL 176 (280)
Q Consensus 105 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~~~l 176 (280)
.++|+.|+..|+.+.++.|++.+...... .+..|.||||+|+.. ++.+++++|++.|++++ ..+..|.|||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~~G~TpL 230 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGNTAL 230 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCTTCCCHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCCCCCCHH
Confidence 46799999999999999999876554332 578899999999997 89999999999999998 7899999999
Q ss_pred HHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcH
Q 041966 177 TLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQY 253 (280)
Q Consensus 177 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~ 253 (280)
|+|+..++.+++++|+++|++++. .|..|.||||+|+..++.+++++|++.+.. .|.||||+|++.|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSC-CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence 999999999999999999999875 899999999999999999999999998742 589999999998864
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.90 E-value=6.1e-23 Score=157.04 Aligned_cols=194 Identities=16% Similarity=0.106 Sum_probs=143.5
Q ss_pred cCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHH
Q 041966 32 VPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVA 111 (280)
Q Consensus 32 ~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a 111 (280)
.|..+.+.++.+...|+..+.+++...-+.........+.... .....-..+++................++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 4678889999999999987665554433221100101111111 111111222333322211122223345789999
Q ss_pred HhcCcHHHHHHHHcCCCcc-----ccccccCCchHHHHHHhc---CCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q 041966 112 CERGRLDVVKQLLNYPSVS-----LLEMDDGLTTSLHVAASA---GHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKG 183 (280)
Q Consensus 112 ~~~~~~~~~~~Ll~~~~~~-----~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~ 183 (280)
+..++.+.+..+++.+... ....+..|.||||+|+.. ++.+++++|+++|++++ ..+..|.||||+|+..|
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~TpLh~A~~~g 216 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTD 216 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHHHHHHTT
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcC
Confidence 9999999999999886653 333477899999999999 89999999999999998 88999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhccc
Q 041966 184 HLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLE 231 (280)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 231 (280)
+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+..
T Consensus 217 ~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 217 NAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999876 899999999999999999999999998853
No 105
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=1.8e-23 Score=140.58 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=68.3
Q ss_pred cCCCHHHHHHhcCcHHHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhc
Q 041966 103 NKESALYVACERGRLDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSK 182 (280)
Q Consensus 103 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~ 182 (280)
.|.||||+|+..|+.+++++|++.+. ..+..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVYE 83 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCC-CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHc
Confidence 44556666666666666666665432 334445556666666666666666666666666665 5666666777777777
Q ss_pred CcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhh
Q 041966 183 GHLEITRELLKMDPDLSSSQDNEGRTPLHWATI 215 (280)
Q Consensus 183 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~ 215 (280)
++.+++++|+++|++++. .+..|.||+|+|..
T Consensus 84 ~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTV-KGPDGLTAFEATDN 115 (123)
T ss_dssp TCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCC
T ss_pred CCHHHHHHHHHcCCCCCC-cCCCCCCHHHHhCC
Confidence 777777777776666544 66666777776643
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=2.7e-22 Score=127.76 Aligned_cols=91 Identities=37% Similarity=0.659 Sum_probs=60.0
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcC
Q 041966 172 GRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNN 251 (280)
Q Consensus 172 g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~ 251 (280)
|.||||+|+..++.+++++|++.|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.||||+|+..+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcC
Confidence 56666666666666666666666666554 5666666666666666666666666665 455566666777777777777
Q ss_pred cHHHHHHHHHhcc
Q 041966 252 QYEAVKHLMETLN 264 (280)
Q Consensus 252 ~~~~~~~Ll~~~~ 264 (280)
+.+++++|++.|+
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 7777777766643
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=4.7e-22 Score=164.46 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=72.1
Q ss_pred hHHHHHHhcCCHHHHHHHHHhCCCCccCC------CCCCCcHHHHHHh---cCcHHHHHHHHhcCCCCCCCCCCCCCChh
Q 041966 140 TSLHVAASAGHLEIVNELLEARPEFTWKK------DPNGRTPLTLCSS---KGHLEITRELLKMDPDLSSSQDNEGRTPL 210 (280)
Q Consensus 140 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~g~~~l~~a~~---~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 210 (280)
+.|+.|+..|+.+.++.|++.|++++ .. +..|.||||+|+. .++.+++++|+++|++++. .+..|.|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n-~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~-~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFG-QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSS-SCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTC-CCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhccccc-CCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCc-cCCCCCcHH
Confidence 45666666666666666666665554 22 4556666666643 5566666666666666544 555666666
Q ss_pred hhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHHHHhcCcHHHHHHHHHhcc
Q 041966 211 HWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHLGVKNNQYEAVKHLMETLN 264 (280)
Q Consensus 211 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 264 (280)
|+|+..|+.+++++|++.| .+++.+|..|.||||+|+..|+.+++++|++.|+
T Consensus 212 h~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga 264 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQA 264 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 6666666666666666655 4455556666666666666666666666666543
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.88 E-value=1.2e-22 Score=134.85 Aligned_cols=108 Identities=30% Similarity=0.412 Sum_probs=82.8
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccchhhhhhcCCchHHH
Q 041966 167 KKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESSEIRTLHGETVLHL 246 (280)
Q Consensus 167 ~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 246 (280)
..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+ .+++.+|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence 3567778888888888888888888888877655 6777888888888888888888888776 5666777788888888
Q ss_pred HHhcCcHHHHHHHHHhcccccccCCCCCCCCCC
Q 041966 247 GVKNNQYEAVKHLMETLNTTKLVNTPDNDGNTI 279 (280)
Q Consensus 247 a~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~ 279 (280)
|+..++.+++++|+++ |+++|.++..|.||
T Consensus 82 A~~~~~~~~~~~Ll~~---ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAK---GADVNARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTT---SSSHHHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHc---CCCCCcCCcccccc
Confidence 8888888888888877 44578888888776
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=2.3e-21 Score=123.45 Aligned_cols=91 Identities=44% Similarity=0.727 Sum_probs=71.6
Q ss_pred CchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcC
Q 041966 138 LTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKG 217 (280)
Q Consensus 138 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~ 217 (280)
|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+..+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcC
Confidence 5678888888888888888888888776 6777888888888888888888888888887655 6777888888888888
Q ss_pred ChhhHHHHHHhcc
Q 041966 218 RVNIIDEILSVNL 230 (280)
Q Consensus 218 ~~~~~~~Ll~~~~ 230 (280)
+.+++++|++.++
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 8888888887663
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=2.3e-21 Score=153.18 Aligned_cols=147 Identities=22% Similarity=0.256 Sum_probs=113.6
Q ss_pred hcCCCHHHHHHhc-CcHHHHHHHHcCCCccccccc--cCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHH
Q 041966 102 RNKESALYVACER-GRLDVVKQLLNYPSVSLLEMD--DGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTL 178 (280)
Q Consensus 102 ~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~ 178 (280)
..+.|+||+|+.. ++.++++.|++.+.. .+..+ ..|.||||+|+..++.+++++|+++|++++ ..+..|.||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHH
Confidence 3445799999999 999999999998654 44444 788999999999999999999999999998 889999999999
Q ss_pred HHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcccch--hhhhhcCCchHHHHHhcC
Q 041966 179 CSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLESS--EIRTLHGETVLHLGVKNN 251 (280)
Q Consensus 179 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~--~~~~~~g~t~l~~a~~~~ 251 (280)
|+..++.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+.... ...+..+.|+++.+....
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~~-~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHcCcHHHHHHHHHCcCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999865 89999999999999999999999998763322 234556778888776543
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=2.2e-21 Score=160.47 Aligned_cols=126 Identities=19% Similarity=0.133 Sum_probs=81.6
Q ss_pred chHHHHHhcCcHHHHHHHHhcChhhhhhh------hhcCCCHHHHHHh---cCcHHHHHHHHcCCCccccccccCCchHH
Q 041966 72 TPVHEACREGRLHIVRLFLETDSWVVHKM------NRNKESALYVACE---RGRLDVVKQLLNYPSVSLLEMDDGLTTSL 142 (280)
Q Consensus 72 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------~~~~~t~l~~a~~---~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l 142 (280)
+.||.|+..|+.++++.|++.|++ ++.. +..|.||||+|+. .|+.+++++|++++ .+.+..+..|.|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhccc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCCCCCcHH
Confidence 457777777777777777776663 3222 5566777777754 66677777777653 34555566667777
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCC
Q 041966 143 HVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSS 200 (280)
Q Consensus 143 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~ 200 (280)
|+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCS-CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 77777777777777777777766 6666777777777777777777777777766543
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.85 E-value=3.9e-21 Score=127.50 Aligned_cols=109 Identities=28% Similarity=0.412 Sum_probs=90.8
Q ss_pred ccccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhh
Q 041966 133 EMDDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHW 212 (280)
Q Consensus 133 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 212 (280)
..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHH
Confidence 456778889999999899999999998888887 7788889999999999999999999999888765 78888999999
Q ss_pred HhhcCChhhHHHHHHhcccchhhhhhcCCchH
Q 041966 213 ATIKGRVNIIDEILSVNLESSEIRTLHGETVL 244 (280)
Q Consensus 213 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 244 (280)
|+..++.+++++|++.+ .+++.++..|.+|-
T Consensus 82 A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence 99999999999999877 67778888887764
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=2.4e-19 Score=117.68 Aligned_cols=92 Identities=26% Similarity=0.396 Sum_probs=78.0
Q ss_pred hhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHH
Q 041966 30 QTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALY 109 (280)
Q Consensus 30 ~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~ 109 (280)
...+..|.|+||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+ +.+..|..|.||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA-DVXAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccccCCCcHHH
Confidence 34567888999999999999999999998877 78888899999999999999999999999988 56677888999999
Q ss_pred HHHhcCcHHHHHHH
Q 041966 110 VACERGRLDVVKQL 123 (280)
Q Consensus 110 ~a~~~~~~~~~~~L 123 (280)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999988876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=2.3e-18 Score=112.93 Aligned_cols=88 Identities=32% Similarity=0.479 Sum_probs=44.1
Q ss_pred ccCCchHHHHHHhcCCHHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCChhhhHh
Q 041966 135 DDGLTTSLHVAASAGHLEIVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPDLSSSQDNEGRTPLHWAT 214 (280)
Q Consensus 135 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~ 214 (280)
+..|.|+||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++. .+..|.||||+|+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISI 98 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcHHHHHH
Confidence 3444455555555555555555555555444 4444555555555555555555555555555433 4444555555555
Q ss_pred hcCChhhHHH
Q 041966 215 IKGRVNIIDE 224 (280)
Q Consensus 215 ~~~~~~~~~~ 224 (280)
..++.+++++
T Consensus 99 ~~~~~~~~~~ 108 (110)
T 2zgd_A 99 DNGNEDLAEI 108 (110)
T ss_dssp HHTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 5555555444
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=94.47 E-value=0.48 Score=37.12 Aligned_cols=254 Identities=9% Similarity=-0.024 Sum_probs=128.4
Q ss_pred HHcCChhHHHHHHhhc-HHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhCh--hhhhcccccCcchHHHHHhcCcHHH
Q 041966 9 VLKGETPNFLNLVQKD-EEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCP--EMLAATNEKLETPVHEACREGRLHI 85 (280)
Q Consensus 9 ~~~g~~~~~~~ll~~~-~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~ 85 (280)
+..++.+....++..- +....-..|..|+.++.....+++.+....+++.-. -..-..+..|.-.+..+......+-
T Consensus 45 l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~ 124 (351)
T 3gvo_A 45 LERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 124 (351)
T ss_dssp HHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred HhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHH
Confidence 3445555444444432 223344667888888888888888877666665422 1123456666666776666665554
Q ss_pred HHHHHhcC--hhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcC--CCccccccccCCchHHHHHHhcCCHHHHHHHHHh-
Q 041966 86 VRLFLETD--SWVVHKMNRNKESALYVACERGRLDVVKQLLNY--PSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEA- 160 (280)
Q Consensus 86 v~~Ll~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~- 160 (280)
...+++.- ....-..|..|+..+..+...+..+....+++. +.......+..|...+..+......+-...+++.
T Consensus 125 ~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l 204 (351)
T 3gvo_A 125 QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEEL 204 (351)
T ss_dssp HHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHH
Confidence 44444321 112223466666667666665554443333331 1111223344555455555554443322222221
Q ss_pred -CCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhcCCC--CCCCCCCCCCChhhhHhhcCChhhHHHHHHhccc------
Q 041966 161 -RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKMDPD--LSSSQDNEGRTPLHWATIKGRVNIIDEILSVNLE------ 231 (280)
Q Consensus 161 -~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~------ 231 (280)
+.......|..|+..+..+...+..+..+.+++.-.. ..-..+..|...+..+...+..+.-+.+++.-..
T Consensus 205 ~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~ 284 (351)
T 3gvo_A 205 HQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPH 284 (351)
T ss_dssp HTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTE
T ss_pred hhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCC
Confidence 1111124677888888888887777766666653211 0011344454555555555554433333322100
Q ss_pred ---chhhhhhcCCchHHHHHhcCcHHHHHHHHHh
Q 041966 232 ---SSEIRTLHGETVLHLGVKNNQYEAVKHLMET 262 (280)
Q Consensus 232 ---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 262 (280)
..-..|..|.-.+..+...+..+.-+.+++.
T Consensus 285 ~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~ 318 (351)
T 3gvo_A 285 SALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHK 318 (351)
T ss_dssp EHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHH
Confidence 1123456666666666666555544444443
No 116
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=91.09 E-value=2.1 Score=33.72 Aligned_cols=176 Identities=10% Similarity=-0.006 Sum_probs=80.9
Q ss_pred HHHcCChhHHHHHHhhc-HHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChh--hhhcccccCcchHHHHHhcCcHH
Q 041966 8 TVLKGETPNFLNLVQKD-EEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPE--MLAATNEKLETPVHEACREGRLH 84 (280)
Q Consensus 8 a~~~g~~~~~~~ll~~~-~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~ 84 (280)
++..++.+....+++.- +....-..+..|+.++......+..+....+++.-.. ..-..+..|.-.+..+......+
T Consensus 49 ~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~ 128 (369)
T 3k49_A 49 ELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSN 128 (369)
T ss_dssp HHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHH
Confidence 34444544444444432 2233345677888888888888877666555554211 11234455555555555554444
Q ss_pred HHHHHHhcC--hhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcC--CCccccccccCCchHHHHHHhcCCHHHHHHHHHh
Q 041966 85 IVRLFLETD--SWVVHKMNRNKESALYVACERGRLDVVKQLLNY--PSVSLLEMDDGLTTSLHVAASAGHLEIVNELLEA 160 (280)
Q Consensus 85 ~v~~Ll~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 160 (280)
-...+++.- ....-..|..|+..+..+...+..+....+++. +.......+..|...+..+...+..+-.+.+++.
T Consensus 129 q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~ 208 (369)
T 3k49_A 129 QRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNE 208 (369)
T ss_dssp HHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHH
Confidence 333333321 111223455666666666655543322222211 1122223344555555555555555444444432
Q ss_pred CCCC--ccCCCCCCCcHHHHHHhcC
Q 041966 161 RPEF--TWKKDPNGRTPLTLCSSKG 183 (280)
Q Consensus 161 ~~~~--~~~~~~~g~~~l~~a~~~~ 183 (280)
-... ....|..|+..+..+...+
T Consensus 209 l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 209 LKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp TTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 1110 1123444554444444433
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=89.10 E-value=0.85 Score=35.69 Aligned_cols=250 Identities=13% Similarity=0.044 Sum_probs=126.1
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChh--hhhcccccCcchHHHHHhc
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPE--MLAATNEKLETPVHEACRE 80 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~--~~~~~~~~g~t~L~~A~~~ 80 (280)
++|++-.+.+..... .+-+-.+....-..|..|.-.|......++.+-.+.+.+.-.. ..-..|..|+..+.-....
T Consensus 5 ~~l~e~~r~~~~~~~-~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~ 83 (351)
T 3gvo_A 5 SRLLEDFRNNRFPNL-QLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEF 83 (351)
T ss_dssp CHHHHHHHTTCCTTC-CGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred cHHHHHHhCCCCCCc-CHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhh
Confidence 456666666643221 1112223333445566777778888888877655554443211 1246778888888888888
Q ss_pred CcHHHHHHHHhc--ChhhhhhhhhcCCCHHHHHHhcCcHHHHHHHHcC--CCccccccccCCchHHHHHHhcCCHHHHHH
Q 041966 81 GRLHIVRLFLET--DSWVVHKMNRNKESALYVACERGRLDVVKQLLNY--PSVSLLEMDDGLTTSLHVAASAGHLEIVNE 156 (280)
Q Consensus 81 ~~~~~v~~Ll~~--~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 156 (280)
++.+....+++. +....-..+..|...+..+......+-...+++. +.......|..|+..+.........+..+.
T Consensus 84 ~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~ 163 (351)
T 3gvo_A 84 GSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF 163 (351)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHH
T ss_pred CCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHH
Confidence 887766666553 2112223456666667777766665544444432 122233445666666666666555554444
Q ss_pred HHHhCCC--CccCCCCCCCcHHHHHHhcCcHH----HHHHHHhcCCCCCCCCCCCCCChhhhHhhcCChhhHHHHHHhcc
Q 041966 157 LLEARPE--FTWKKDPNGRTPLTLCSSKGHLE----ITRELLKMDPDLSSSQDNEGRTPLHWATIKGRVNIIDEILSVNL 230 (280)
Q Consensus 157 ll~~~~~--~~~~~~~~g~~~l~~a~~~~~~~----~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 230 (280)
+++.-.. .....+..|...+..+......+ +++.|..+-.. -..|.+|.-.+......+..+..+.+++.-.
T Consensus 164 i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~--L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 164 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQ--LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHh--cCCCchHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 5443211 11123445555555444433332 23333221111 1245566666666666665555555554321
Q ss_pred cch--hhhhhcCCchHHHHHhcCcHHH
Q 041966 231 ESS--EIRTLHGETVLHLGVKNNQYEA 255 (280)
Q Consensus 231 ~~~--~~~~~~g~t~l~~a~~~~~~~~ 255 (280)
..+ -..++.|...+..+...+..+.
T Consensus 242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~ 268 (351)
T 3gvo_A 242 GKVLALSQHKFASNVVEKCVTHASRAE 268 (351)
T ss_dssp TCHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHhCCHHH
Confidence 111 1233445555555555554443
No 118
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=77.23 E-value=3.5 Score=32.65 Aligned_cols=93 Identities=8% Similarity=-0.029 Sum_probs=55.9
Q ss_pred HHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHh---ChhhhhcccccCcchHHHHHhcCcHH----HHHHHHhcChhhh
Q 041966 25 EEIIKQTVPGSLNTVLHLAARYGHEELALEILKL---CPEMLAATNEKLETPVHEACREGRLH----IVRLFLETDSWVV 97 (280)
Q Consensus 25 ~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~ 97 (280)
+....-..|..|+..+.....+++.+--+.++.. +.-..-..+..|.-.+..+......+ +++.|..... ..
T Consensus 60 ~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~-~~ 138 (382)
T 3v71_A 60 TLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDL-AA 138 (382)
T ss_dssp HHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCH-HH
T ss_pred HHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccch-HH
Confidence 4445567788999999999999987654444432 22223356677777777777666554 3333322111 22
Q ss_pred hhhhhcCCCHHHHHHhcCcHH
Q 041966 98 HKMNRNKESALYVACERGRLD 118 (280)
Q Consensus 98 ~~~~~~~~t~l~~a~~~~~~~ 118 (280)
-..|.+|+..+..+......+
T Consensus 139 L~~D~~GnhVIQk~le~~~~~ 159 (382)
T 3v71_A 139 MCTDQISIHVIQRVVKQLPVD 159 (382)
T ss_dssp HHHSTTTHHHHHHHHTTSCTT
T ss_pred HhcCcccccHHHHHHHHCCHH
Confidence 345677777777776665443
No 119
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.91 E-value=16 Score=25.30 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=57.9
Q ss_pred HHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcH
Q 041966 4 RLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRL 83 (280)
Q Consensus 4 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 83 (280)
.+-.|+..|+++....+.+........ ...=..|...|+.++++....+..+. ...+.+....|+.
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l~~~~~W------k~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKLNDSITW------ERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCHHHH------HHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCH
T ss_pred HHHHHHhcCCHHHHHHHHHHhCCHHHH------HHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCH
Confidence 344566666666666555432111111 12223455666666666666555442 1223333335555
Q ss_pred HHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCcH-HHHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHH
Q 041966 84 HIVRLFLETDSWVVHKMNRNKESALYVACERGRL-DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLE 159 (280)
Q Consensus 84 ~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 159 (280)
+-++.+.+... ........++.+...|+. ++++.|.+.+..+ -+...|..+|..+..+.+++
T Consensus 77 e~L~kla~iA~-----~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~---------eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 77 NKLSKMQNIAQ-----TREDFGSMLLNTFYNNSTKERSSIFAEGGSLP---------LAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH---------HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HCccHHHHHHHHHHcCCHHHHHHHHHHCCChH---------HHHHHHHHcCcHHHHHHHHH
Confidence 55554433111 111112334455455553 3445454432211 14445555666666666654
No 120
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=75.09 E-value=3.2 Score=26.74 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=45.7
Q ss_pred ChHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChh
Q 041966 2 DERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPE 61 (280)
Q Consensus 2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~ 61 (280)
.+.+..|++.|+++.+..+=......+.........+++.-+......++++.+|++...
T Consensus 18 S~~ML~aA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~IL~nDae 77 (122)
T 3a7m_A 18 SQSLLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQL 77 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 357888999999999998887776666555555556677777777778888888887665
No 121
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=74.29 E-value=1.4 Score=21.38 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=12.8
Q ss_pred ChHHHHHHHcCChhHHHHHH
Q 041966 2 DERLFETVLKGETPNFLNLV 21 (280)
Q Consensus 2 ~~~l~~a~~~g~~~~~~~ll 21 (280)
+.+++.|+..||.+.+..|-
T Consensus 14 EQqiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 14 RKQMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 34667777777777766543
No 122
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=73.25 E-value=9.1 Score=30.08 Aligned_cols=124 Identities=7% Similarity=-0.093 Sum_probs=68.0
Q ss_pred HhhhcCCCCcchhHHHHhcCCHHHHHHHHHhCh-h-hhhcccccCcchHHHHHhcCcHHHHHHHHhcC--hhhhhhhhhc
Q 041966 28 IKQTVPGSLNTVLHLAARYGHEELALEILKLCP-E-MLAATNEKLETPVHEACREGRLHIVRLFLETD--SWVVHKMNRN 103 (280)
Q Consensus 28 ~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~-~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~ 103 (280)
..-..+..|.-.+..+...++.+-...+.+.-. . ..-..|.+|+..+.-....+..+....+++.- ....-..+..
T Consensus 34 ~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~ 113 (369)
T 3k49_A 34 LEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMY 113 (369)
T ss_dssp HHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTT
T ss_pred HHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChh
Confidence 344556777778888888888765555554321 1 13467788888888888888776666555532 1111223455
Q ss_pred CCCHHHHHHhcCcHHHHHHHHcC--CCccccccccCCchHHHHHHhcCCH
Q 041966 104 KESALYVACERGRLDVVKQLLNY--PSVSLLEMDDGLTTSLHVAASAGHL 151 (280)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~~~l~~a~~~~~~ 151 (280)
|...+..+......+-...++.. +.......|..|+..+......+..
T Consensus 114 G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~ 163 (369)
T 3k49_A 114 ACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPI 163 (369)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCG
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCH
Confidence 55556666655544433333331 1122223455555555555554443
No 123
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=64.59 E-value=46 Score=26.27 Aligned_cols=164 Identities=8% Similarity=0.067 Sum_probs=85.5
Q ss_pred HhhhcCCCCcchhHHHHhcCCHHHHHHHHHh--C-hhhhhcccccCcchHHHHHhcCcHHHHHHHHhc----Chhhhhhh
Q 041966 28 IKQTVPGSLNTVLHLAARYGHEELALEILKL--C-PEMLAATNEKLETPVHEACREGRLHIVRLFLET----DSWVVHKM 100 (280)
Q Consensus 28 ~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~--~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~ 100 (280)
..-..+..|.-++..+....+.+-...+++. + ....-..|.+|+..+.-+......+..+.+++. +....-..
T Consensus 100 ~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~ 179 (382)
T 3v71_A 100 LAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQ 179 (382)
T ss_dssp HHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhc
Confidence 3345566777777777777665533333322 1 111235677787777777776655544444432 11111223
Q ss_pred hhcCCCHHHHHHhcCcH-----------H----HHHHHHcCCCccccccccCCchHHHHHHhcCCH-H-HHHHHHHh---
Q 041966 101 NRNKESALYVACERGRL-----------D----VVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL-E-IVNELLEA--- 160 (280)
Q Consensus 101 ~~~~~t~l~~a~~~~~~-----------~----~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~-~-~~~~ll~~--- 160 (280)
+..|...+..+...... . ++..+.. .......|.+|+..+.+....+.. + .-..++..
T Consensus 180 h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~--~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~ 257 (382)
T 3v71_A 180 DKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVR--NCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLL 257 (382)
T ss_dssp STTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHT--THHHHHTSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTT
T ss_pred CchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHH--HHHHHhhCccccHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45555555554443211 1 2222322 222345577888888888877653 2 23344432
Q ss_pred CCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHh
Q 041966 161 RPEFTWKKDPNGRTPLTLCSSKGHLEITRELLK 193 (280)
Q Consensus 161 ~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~ 193 (280)
+.-.....++.|...+..+...+..+..+.+++
T Consensus 258 ~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~ 290 (382)
T 3v71_A 258 RNLLSMSQDKYASHVIEGAFLFAPPALLHEMME 290 (382)
T ss_dssp TCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHH
Confidence 222223567777777777777666655555544
No 124
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=64.57 E-value=3.8 Score=26.53 Aligned_cols=59 Identities=19% Similarity=0.048 Sum_probs=39.8
Q ss_pred hHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChh
Q 041966 3 ERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPE 61 (280)
Q Consensus 3 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~ 61 (280)
..+..|++.|+++.+..+=......+.........++|.-+.+....++++.+|++...
T Consensus 32 ~~ML~aA~~gdWD~Lv~lE~~y~~lVe~L~~~~~~~~l~~~~r~~k~~lL~~IL~nDae 90 (126)
T 3h3m_A 32 SRMLAAANASNWDLVLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAA 90 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 56788889999998888777665554444333344556666666667777777776655
No 125
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=59.23 E-value=14 Score=29.55 Aligned_cols=98 Identities=5% Similarity=-0.027 Sum_probs=60.0
Q ss_pred HhhhcCCCCcchhHHHHhcCCH-------HHHHHHHHhCh--hhhhcccccCcchHHHHHhcCcHHHHHHHHhcC---hh
Q 041966 28 IKQTVPGSLNTVLHLAARYGHE-------ELALEILKLCP--EMLAATNEKLETPVHEACREGRLHIVRLFLETD---SW 95 (280)
Q Consensus 28 ~~~~~~~~g~~~L~~A~~~g~~-------~~~~~ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~ 95 (280)
..-..|..|+..+......|+. +.-..+++.-. -..-..+..|.-.+..+......+-...+++.- ..
T Consensus 72 ~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~ 151 (412)
T 3k62_A 72 LKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDAR 151 (412)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHH
T ss_pred HHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhcccc
Confidence 4456788888888877777766 43333333211 112356677777777777777766555555543 11
Q ss_pred -hhhhhhhcCCCHHHHHHhcCcHHHHHHHHc
Q 041966 96 -VVHKMNRNKESALYVACERGRLDVVKQLLN 125 (280)
Q Consensus 96 -~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 125 (280)
..-..|..|+..+..+......+..+.+++
T Consensus 152 i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~ 182 (412)
T 3k62_A 152 LIAICVDQNANHVIQKVVAVIPLKNWEFIVD 182 (412)
T ss_dssp HHHHHHCTTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHhCccccHHHHHHHHhCCHHHHHHHHH
Confidence 223457888888888888776665555544
No 126
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=58.99 E-value=7.5 Score=30.75 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=38.9
Q ss_pred HHHcCChhHHHHHHhhcHHHHhhh------------cCCCCcchhHHHHhcCCHHHHHHHHHh
Q 041966 8 TVLKGETPNFLNLVQKDEEIIKQT------------VPGSLNTVLHLAARYGHEELALEILKL 58 (280)
Q Consensus 8 a~~~g~~~~~~~ll~~~~~~~~~~------------~~~~g~~~L~~A~~~g~~~~~~~ll~~ 58 (280)
.+..||...|+.++..+++...+. .-..|.|.+|+|++..+.+++..|+..
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 467899999999999876642221 124588999999999999999888873
No 127
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=57.17 E-value=45 Score=23.03 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=82.9
Q ss_pred cchhHHHHhcCCHHHHHHHHHhChhhhhcccccCcchHHHHHhcCcHHHHHHHHhcChhhhhhhhhcCCCHHHHHHhcCc
Q 041966 37 NTVLHLAARYGHEELALEILKLCPEMLAATNEKLETPVHEACREGRLHIVRLFLETDSWVVHKMNRNKESALYVACERGR 116 (280)
Q Consensus 37 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~ 116 (280)
.+=+..|+..|+++....+.+.... .......=..|...|+.++++.-..+..+.- ..+.+....|+
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~-----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~--------~L~~Ly~~tg~ 75 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLND-----SITWERLIQEALAQGNASLAEMIYQTQHSFD--------KLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH--------HHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCC-----HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH--------HHHHHHHHhCC
Confidence 3457789999999988877654211 1122345566778899999998877655221 23445555677
Q ss_pred HHHHHHHHcCCCccccccccCCchHHHHHHhcCCHH-HHHHHHHhCCCCccCCCCCCCcHHHHHHhcCcHHHHHHHHhc
Q 041966 117 LDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLE-IVNELLEARPEFTWKKDPNGRTPLTLCSSKGHLEITRELLKM 194 (280)
Q Consensus 117 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~Ll~~ 194 (280)
.+-++.+.+.. ......+..++.+...|+.+ +++.|.+.|.-.. +...|..++..+..+.+++.
T Consensus 76 ~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~e---------A~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL---------AYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH---------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHH---------HHHHHHHcCcHHHHHHHHHH
Confidence 77666654321 11122245777787888764 7777776554332 66677788888888888754
No 128
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=48.25 E-value=4.7 Score=25.99 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=35.4
Q ss_pred ChHHHHHHHcCChhHHHHHHhhcHHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHhChh
Q 041966 2 DERLFETVLKGETPNFLNLVQKDEEIIKQTVPGSLNTVLHLAARYGHEELALEILKLCPE 61 (280)
Q Consensus 2 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~ 61 (280)
.+.+..|++.|+++.+..+=......+.........+++.-+......++++.++++...
T Consensus 21 S~~ML~aA~~gdWD~Lv~lE~~y~~lVe~L~~~~~~~~ls~~~~~~~~~lL~~IL~nDae 80 (123)
T 3nkz_A 21 SEQMLVLATEGNWDALVDLEMTYLKAVESTANITISSCSSLMLQDLLREKLRAILDNEIE 80 (123)
T ss_dssp HHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 356788889999998887776655544333221222334444444455677777766554
No 129
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=41.37 E-value=53 Score=26.20 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=15.0
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHh
Q 041966 171 NGRTPLTLCSSKGHLEITRELLK 193 (280)
Q Consensus 171 ~g~~~l~~a~~~~~~~~~~~Ll~ 193 (280)
-|.|.+|+|++..+.+++..|+.
T Consensus 68 ~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 68 VGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCchhhhhhhhhhhhhHHHHhhh
Confidence 36667777776666666666664
No 130
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=37.07 E-value=41 Score=27.68 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=9.3
Q ss_pred hHHHHhcCCHHHHHHHHH
Q 041966 40 LHLAARYGHEELALEILK 57 (280)
Q Consensus 40 L~~A~~~g~~~~~~~ll~ 57 (280)
|...++.|+.+-+..+++
T Consensus 33 id~c~k~G~~~~A~~lf~ 50 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYD 50 (501)
T ss_dssp HHHTTTSCCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHH
Confidence 444555666554444444
No 131
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=30.65 E-value=2.1e+02 Score=22.90 Aligned_cols=155 Identities=8% Similarity=0.038 Sum_probs=76.8
Q ss_pred hhcCCCCcchhHHHHhcCCHHHHHHHHHhC---hhh-hhcccccCcchHHHHHhcCcHHHHHHHHhcCh----hhhhhhh
Q 041966 30 QTVPGSLNTVLHLAARYGHEELALEILKLC---PEM-LAATNEKLETPVHEACREGRLHIVRLFLETDS----WVVHKMN 101 (280)
Q Consensus 30 ~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~---~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~ 101 (280)
-..+..|.-.+..+......+-...+++.- +.. .-..|..|+..+.-.......+..+.+++.-. ...-..+
T Consensus 117 L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h 196 (412)
T 3k62_A 117 MCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSD 196 (412)
T ss_dssp HHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTS
T ss_pred HHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcC
Confidence 344566666666666666665555555543 121 22456677666666666666555554444211 0111223
Q ss_pred hcCCCHHHHHHhcCc----------------H----HHHHHHHcCCCccccccccCCchHHHHHHhcCCHHH-HHHHHHh
Q 041966 102 RNKESALYVACERGR----------------L----DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEI-VNELLEA 160 (280)
Q Consensus 102 ~~~~t~l~~a~~~~~----------------~----~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~-~~~ll~~ 160 (280)
..|...+..+..... . +++..++.+ ......|.+|+..+.+....|..+. -..++..
T Consensus 197 ~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~--~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~ 274 (412)
T 3k62_A 197 KYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNR--CQELATNEYANYIIQHIVSNDDLAVYRECIIEK 274 (412)
T ss_dssp HHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHT--HHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHH--HHHHhhCccccHHHHHHHhcCCchhHHHHHHHH
Confidence 444444444444322 1 122333332 2233446667777777776665432 2233321
Q ss_pred ---CCCCccCCCCCCCcHHHHHHhcCcHH
Q 041966 161 ---RPEFTWKKDPNGRTPLTLCSSKGHLE 186 (280)
Q Consensus 161 ---~~~~~~~~~~~g~~~l~~a~~~~~~~ 186 (280)
+.-.....++.|...+..+...+..+
T Consensus 275 ~l~~~~~~LS~~KfgSnVVek~L~~~~~~ 303 (412)
T 3k62_A 275 CLMRNLLSLSQEKFASHVVEKAFLHAPLE 303 (412)
T ss_dssp HTTTCHHHHHTSTTHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHhCCHH
Confidence 22222356667777777666666554
No 132
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=26.35 E-value=1.5e+02 Score=22.54 Aligned_cols=167 Identities=14% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCCcchhHHHHhcCCHHHHHHHHHh--ChhhhhcccccCcchHHHHHhcCcHHHHHHHHh--cChhhhhhh
Q 041966 25 EEIIKQTVPGSLNTVLHLAARYGHEELALEILKL--CPEMLAATNEKLETPVHEACREGRLHIVRLFLE--TDSWVVHKM 100 (280)
Q Consensus 25 ~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~ 100 (280)
+....-..+..|.-.+......++.+-...+.+. +.-..-..|..|+..+.-....+..+....+++ .+....-..
T Consensus 13 g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~ 92 (333)
T 3bwt_A 13 GSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISL 92 (333)
T ss_dssp TCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHH
T ss_pred HHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHh
Q ss_pred hhcCCCHHHHHHhcCcHH-----HHHHHHcCCCccccccccCCchHHHHHHhcCCHHHHHHHHH--hCCCCccCCCCCCC
Q 041966 101 NRNKESALYVACERGRLD-----VVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLEIVNELLE--ARPEFTWKKDPNGR 173 (280)
Q Consensus 101 ~~~~~t~l~~a~~~~~~~-----~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~--~~~~~~~~~~~~g~ 173 (280)
+..|...+..+......+ +++.|.. .......|..|+..+......+..+..+.+++ .+.-.....+..|.
T Consensus 93 ~~~G~rviQ~~l~~~~~~~~~~~i~~el~~--~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs 170 (333)
T 3bwt_A 93 NPHGTRALQKLIECIKTDEEAQIVVDSLRP--YTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGC 170 (333)
T ss_dssp STTHHHHHHHHHHHCCSHHHHHHHHHHHGG--GHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTHH
T ss_pred cccccHHHHHHHHhcCcHHHHHHHHHHHHH--HHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchhH
Q ss_pred cHHHHHHhcCcHHHHHHHHh
Q 041966 174 TPLTLCSSKGHLEITRELLK 193 (280)
Q Consensus 174 ~~l~~a~~~~~~~~~~~Ll~ 193 (280)
..+..+...+..+-.+.+++
T Consensus 171 ~Vvq~~l~~~~~~~~~~l~~ 190 (333)
T 3bwt_A 171 CVLQRCLDHGTTEQCDNLCD 190 (333)
T ss_dssp HHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHH
No 133
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.02 E-value=1.1e+02 Score=21.56 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=21.7
Q ss_pred CcchhHHHHhcCCHHHHHHHHHhChhh
Q 041966 36 LNTVLHLAARYGHEELALEILKLCPEM 62 (280)
Q Consensus 36 g~~~L~~A~~~g~~~~~~~ll~~~~~~ 62 (280)
...+|-.|++.|+...+...++++.+.
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~ 108 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAF 108 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHH
Confidence 357888899999998888888887663
No 134
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=21.44 E-value=85 Score=20.67 Aligned_cols=9 Identities=44% Similarity=0.335 Sum_probs=4.6
Q ss_pred HHHHHHHHh
Q 041966 50 ELALEILKL 58 (280)
Q Consensus 50 ~~~~~ll~~ 58 (280)
+++.+|+++
T Consensus 49 eim~~L~kR 57 (140)
T 1vdy_A 49 EFSEFILKR 57 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555543
Done!