BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041967
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVA 111
N K K +S G ++DA+ +EAI L+P + +LY+ R+ Y K A D
Sbjct: 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64
Query: 112 LETNPDSAKGYKIRGMARARLGQWEEA 138
++ PD KGY + A L ++EEA
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEA 91
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 37 GDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYV 96
D +++ EE++ AN D E+AI ++AI LNP++AI Y R+ Y+
Sbjct: 14 ADGALKRAEELKTQAN-------DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL 66
Query: 97 KLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148
+ A+ DA A+E + KGY R + LG++ A D K+
Sbjct: 67 RTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 118
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%)
Query: 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA 108
D A M K K + +G A+ TEAI NP A LY+ RA Y KL + A++D
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
++ P KGY + A + + +A + A LD
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 37 GDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYV 96
D +++ EE++ AN D E+AI ++AI LNP++AI Y R+ Y+
Sbjct: 6 ADGALKRAEELKTQAN-------DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL 58
Query: 97 KLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148
+ A+ DA A+E + KGY R + LG++ A D K+
Sbjct: 59 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
K +A D E+AI ++AI LNP++AI Y R+ Y++ A+ DA A+E
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148
+ KGY R + LG++ A D K+
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125
K +A AI NP A+ Y RA Y+K+ +P A+ D ALE + S K +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 126 GMARARLGQWEEAANDLHVA------SKLDYDEEIGMALK 159
G + + ++EA +L A +L++ ++I AL+
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125
K +A AI NP A+ Y RA Y+K+ +P A+ D ALE + S K +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 126 GMARARLGQWEEAANDLHVA------SKLDYDEEIGMALK 159
G + + ++EA +L A +L++ ++I AL+
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126
E A+ +AI LNP +A+ + RA Y KL A++D A+ +P +K Y G
Sbjct: 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 127 MARARLGQWEEAANDLHVASKLDYDEE 153
+A + L + EA A +LD D E
Sbjct: 88 LALSSLNKHVEAVAYYKKALELDPDNE 114
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
L++ G+L DA+ Q A+ +P + I Y RA V++ + K AA+ D ++ D
Sbjct: 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95
Query: 121 GYKIRGMARARLGQWEEAANDL 142
RG + G+ +EA +D
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDF 117
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARA-----GVYVKLNKPNAAIRDAYVAL 112
A +LI +G+ DA + E++M S Y R+ + K KP AIR L
Sbjct: 264 AEELIRDGRYTDATSKY-ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322
Query: 113 ETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL-DYDEEIGMALKKVE 162
+ PD+ K R A ++EA D A + + D++I L+K +
Sbjct: 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+G + AI +A+ L+P +A + Y K AI ALE +P++AK
Sbjct: 19 YYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK 78
Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
+ RG A + G +++A D A +LD
Sbjct: 79 AWYRRGNAYYKQGDYQKAIEDYQKALELD 107
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+G + AI +A+ L+P +A + R Y K AI D ALE +P++AK
Sbjct: 53 YYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAK 112
Query: 121 GYKIRGMARARLG 133
+ G A+ + G
Sbjct: 113 AKQNLGNAKQKQG 125
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
L++ G+L DA+ Q A+ +P + I Y RA V++ K AA+ D ++ D
Sbjct: 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTA 95
Query: 121 GYKIRGMARARLGQWEEAANDL 142
RG + G+ +EA +D
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDF 117
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARA-----GVYVKLNKPNAAIRDAYVAL 112
A +LI +G+ DA + P+ A Y R+ + K KP AIR L
Sbjct: 264 AEELIRDGRYTDATSKYESVXKTEPSIA-EYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322
Query: 113 ETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL-DYDEEIGMALKKVE 162
+ PD+ K R A ++EA D A + + D++I L+K +
Sbjct: 323 QXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQ 373
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+ +AI AI L+P + Y+ + Y+ I ALE PD +K
Sbjct: 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK 94
Query: 121 GYKIRGMARARLGQWEEAANDLHVAS 146
R A LG + +A DL V S
Sbjct: 95 ALLRRASANESLGNFTDAMFDLSVLS 120
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+ +AI AI L+P + Y+ + Y+ I ALE PD +K
Sbjct: 31 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK 90
Query: 121 GYKIRGMARARLGQWEEAANDLHVAS 146
R A LG + +A DL V S
Sbjct: 91 ALLRRASANESLGNFTDAMFDLSVLS 116
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
L++ G+L DA+ Q A+ +P + I Y RA V++ K AA+ D + D
Sbjct: 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTA 72
Query: 121 GYKIRGMARARLGQWEEAANDL 142
RG + G+ +EA +D
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDF 94
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARA-----GVYVKLNKPNAAIRDAYVAL 112
A +LI +G+ DA + P+ A Y R+ + K KP AIR L
Sbjct: 241 AEELIRDGRYTDATSKYESVXKTEPSVAE-YTVRSKERICHCFSKDEKPVEAIRICSEVL 299
Query: 113 ETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL-DYDEEIGMALKKVE 162
+ PD+ K R A ++EA D A + + D++I L+K +
Sbjct: 300 QXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV 110
A K K + +G A+ EA+ +P +AILY+ RA KL + A+ D
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
+ + KGY + + +W +A A ++D
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 32 PSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---SAILY 88
P + P E++R N +L G A+ T+A+ L+ T A+L+
Sbjct: 16 PEPRPATPGASSVEQLRKEGN-------ELFKCGDYGGALAAYTQALGLDATPQDQAVLH 68
Query: 89 AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148
RA ++KL + A +A A+E + K R A +LG+ ++A DL L
Sbjct: 69 RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
Query: 149 D 149
+
Sbjct: 129 E 129
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+G ++AI +A+ L+P SA + Y K + AI ALE +P SA+
Sbjct: 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
+ G A + G ++EA A +LD
Sbjct: 71 AWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+G ++AI +A+ L+P SA + Y K + AI ALE +P SA+
Sbjct: 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104
Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
+ G A + G ++EA A +LD
Sbjct: 105 AWYNLGNAYYKQGDYDEAIEYYQKALELD 133
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126
E A +AI L+P++ Y +A VY + K ++ A+E ++ YK+
Sbjct: 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83
Query: 127 MARARLGQWEEAANDLHVA 145
A +R G + NDL +A
Sbjct: 84 KAMSRAGNAFQKQNDLSLA 102
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+G ++AI +A+ L+P +A + Y K + AI ALE +P++A+
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
+ G A + G ++EA A +LD
Sbjct: 79 AWYNLGNAYYKQGDYDEAIEYYQKALELD 107
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+G ++AI +A+ L+P +A + Y K + AI ALE +P++A+
Sbjct: 53 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Query: 121 GYKIRGMARARLG 133
+ G A+ + G
Sbjct: 113 AKQNLGNAKQKQG 125
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAI--MLNPTSAILYAAR--------- 91
EE AA+ K+ L E KLE+A+ Q AI M + LY
Sbjct: 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKN 230
Query: 92 ------AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVA 145
A +KL + + AI + L + K RG A+A LGQ + A +D A
Sbjct: 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290
Query: 146 SK 147
K
Sbjct: 291 QK 292
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Query: 41 VEVTEEMRDAANMTKLKA-VDLISEGKLEDAIGQLTEAIM----LNPTSAILYAARAGV- 94
V++T ++ AA ++KA V +SEGKL+D +G +A++ L T + ++ A AG+
Sbjct: 253 VDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQ 312
Query: 95 ----YVKL 98
+VKL
Sbjct: 313 LSPKFVKL 320
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 53 MTKLKAV-DLISEGKLEDAIGQLTEAIMLNPTSA-ILYAARAGVYVKLNKPNAAIRDAYV 110
M +LK + +LI++G +E+A+ L E + P Y Y KL A+ +
Sbjct: 1 MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 111 ALETNPDS 118
A+E NPDS
Sbjct: 61 AIELNPDS 68
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125
K +DAI A+ L + Y+ + YV + + + ALE PD +K R
Sbjct: 21 KYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRR 79
Query: 126 GMARARLGQWEEAANDLHVAS 146
A LG++ +A DL V S
Sbjct: 80 ASANEGLGKFADAMFDLSVLS 100
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 40 SVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN 99
++EV E AA + L +V L +GKL++A+ EAI ++PT A Y+ ++
Sbjct: 35 ALEVFPEF--AAAHSNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 91
Query: 100 KPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
A++ A++ NP A + G EA A KL D
Sbjct: 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+G ++AI +A+ L P +A + Y K + AI ALE P++A+
Sbjct: 19 YYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 78
Query: 121 GYKIRGMARARLGQWEEA 138
+ G A + G ++EA
Sbjct: 79 AWYNLGNAYYKQGDYDEA 96
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
+G ++AI +A+ L+P +A + Y K + AI ALE +P++A+
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Query: 121 GYKIRGMARARLG 133
+ G A+ + G
Sbjct: 79 AKQNLGNAKQKQG 91
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL---NKPNAAIRDAYVALETNPD 117
+G LE A+ L +A +NP A L+ R VY L +K A+++ A +ALE P+
Sbjct: 97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA-LALEDTPE 152
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 104 AIRDAYVALETNPDSAKGYKIRGMAR----ARLGQWEEAANDLHVASKLDY 150
A+ DA+ AL D GY IR + + RL Q + L+V + L Y
Sbjct: 19 ALFDAFPALTARADGVLGYSIRALCQDDPDQRLSQTQFTQPALYVVNALSY 69
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 104 AIRDAYVALETNPDSAKGYKIRGMAR----ARLGQWEEAANDLHVASKLDY 150
A+ DA+ AL D GY IR + + RL Q + L+V + L Y
Sbjct: 19 ALFDAFPALTARADGVLGYSIRALCQDDPDQRLSQTQFTQPALYVVNALSY 69
>pdb|1SY0|A Chain A, 1.15 A Crystal Structure Of T121v Mutant Of Nitrophorin 4
From Rhodnius Prolixus
pdb|1SY1|A Chain A, 1.0 A Crystal Structure Of T121v Mutant Of Nitrophorin 4
Complexed With Nitric Oxide
Length = 184
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 83 TSAILYA--ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130
T ++YA + A ++V L+K N + D Y L N D+A G K++ A
Sbjct: 106 TFTVMYADDSSALIHVCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSA 155
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 38 DPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-----ILYAARA 92
D V V +++ A N L+A I ++E +G + +A +++ +A + YAA +
Sbjct: 30 DVHVTVLDKLTYAGNKANLEA---ILGDRVELVVGDIADAELVDKLAAKADAIVHYAAES 86
Query: 93 GVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125
LN P+ I ++ T ++A+ Y IR
Sbjct: 87 HNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 119
>pdb|1U17|A Chain A, 1.7 A Crystal Structure Of H60c Mutant Of Nitrophorin I.
Heme Complexed With Two Molecules Imidazole
pdb|1U17|B Chain B, 1.7 A Crystal Structure Of H60c Mutant Of Nitrophorin I.
Heme Complexed With Two Molecules Imidazole
pdb|1U18|A Chain A, 1.96 A Crystal Structure Of H60c Mutant Of Nitrophorin
Complexed With Histamine
pdb|1U18|B Chain B, 1.96 A Crystal Structure Of H60c Mutant Of Nitrophorin
Complexed With Histamine
Length = 185
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 83 TSAILYA--ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130
T ++YA + A ++ L+K N + D Y L N D+ G K++G A
Sbjct: 107 TFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDTNAGDKVKGAVTA 156
>pdb|1NP1|A Chain A, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Histamine
pdb|1NP1|B Chain B, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Histamine
pdb|2NP1|A Chain A, Crystal Structure Of Nitrophorin 1 From Rhodnius Prolixus
pdb|2NP1|B Chain B, Crystal Structure Of Nitrophorin 1 From Rhodnius Prolixus
pdb|3NP1|A Chain A, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Cyanide
pdb|3NP1|B Chain B, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Cyanide
pdb|4NP1|A Chain A, Nitrophorin 1 Complex With Nitric Oxide
pdb|4NP1|B Chain B, Nitrophorin 1 Complex With Nitric Oxide
Length = 184
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 83 TSAILYA--ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130
T ++YA + A ++ L+K N + D Y L N D+ G K++G A
Sbjct: 106 TFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDTNAGDKVKGAVTA 155
>pdb|1SXX|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4 Complexed With Nitric Oxide
pdb|1SY2|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4
Length = 184
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 83 TSAILYA--ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130
T ++YA + A ++ L+K N A D Y L N D+A G K++ A
Sbjct: 106 TFTVMYADDSSALIHTCLHKGNKAAGDLYAVLNRNKDAAAGDKVKSAVSA 155
>pdb|2OFR|X Chain X, 1.00 A Crystal Structure Of V36aD129AL130A MUTANT OF
Nitrophorin 4 From Rhodnius Prolixus Complexed With
Nitric Oxide At Ph 5.6
Length = 184
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 83 TSAILYA--ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130
T ++YA + A ++ L+K N A D Y L N D+A G K++ A
Sbjct: 106 TFTVMYADDSSALIHTCLHKGNKAAGDLYAVLNRNKDAAAGDKVKSAVSA 155
>pdb|2WSF|K Chain K, Improved Model Of Plant Photosystem I
Length = 131
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 63 SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAA 104
S+G D IG T IM+ T+ +L+A R G+ N+ A
Sbjct: 37 SQGIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATA 78
>pdb|2WSC|K Chain K, Improved Model Of Plant Photosystem I
pdb|2WSE|K Chain K, Improved Model Of Plant Photosystem I
Length = 131
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 63 SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAA 104
S+G D IG T IM+ T+ +L+A R G+ N+ A
Sbjct: 37 SQGIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATA 78
>pdb|3TB6|A Chain A, Structure Of The Effector-binding Domain Of Arabinose
Repressor Arar From Bacillus Subtilis
pdb|3TB6|B Chain B, Structure Of The Effector-binding Domain Of Arabinose
Repressor Arar From Bacillus Subtilis
Length = 298
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK---PNAAIRDAYVAL 112
LE+ + Q + +++ PT + L G Y+ L K P A I +Y L
Sbjct: 64 LENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL 112
>pdb|2AT0|X Chain X, 1.00 A Crystal Structure Of L133v Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide At Ph
5.6
pdb|3C76|X Chain X, 1.07 A Crystal Structure Of L133v Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Ammonia At Ph 7.5
Length = 184
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 83 TSAILYA--ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130
T ++YA + A ++ L+K N + D Y L N D+A G K++ A
Sbjct: 106 TFTVMYADDSSALIHTCLHKGNKDLGDVYAVLNRNKDAAAGDKVKSAVSA 155
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 91 RAGVYVK-LNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
R GV +K L + + AI +AL P+ K ++ + ++G+ EEA A++LD
Sbjct: 115 RLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
Query: 150 YDEEIGMAL 158
+ +AL
Sbjct: 175 EGASVELAL 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,143,076
Number of Sequences: 62578
Number of extensions: 167038
Number of successful extensions: 378
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 100
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)