Query 041967
Match_columns 227
No_of_seqs 184 out of 2121
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.8 9.1E-20 2E-24 145.0 14.1 122 46-167 76-198 (304)
2 KOG0548 Molecular co-chaperone 99.8 2.2E-18 4.7E-23 145.9 15.7 151 49-217 356-507 (539)
3 PRK15359 type III secretion sy 99.7 1.9E-16 4.1E-21 117.2 15.9 114 52-165 25-139 (144)
4 KOG1308 Hsp70-interacting prot 99.7 2.5E-17 5.5E-22 133.0 6.8 175 10-184 73-247 (377)
5 PRK11189 lipoprotein NlpI; Pro 99.7 6.5E-15 1.4E-19 121.6 18.9 131 49-179 62-192 (296)
6 KOG4626 O-linked N-acetylgluco 99.7 8.4E-16 1.8E-20 132.5 11.5 136 49-184 352-488 (966)
7 PLN03088 SGT1, suppressor of 99.7 7E-15 1.5E-19 124.3 16.5 114 52-165 3-117 (356)
8 PRK15363 pathogenicity island 99.6 1E-14 2.2E-19 107.3 14.6 103 48-150 32-134 (157)
9 TIGR00990 3a0801s09 mitochondr 99.6 1.5E-14 3.3E-19 130.7 18.5 135 49-183 329-464 (615)
10 KOG1126 DNA-binding cell divis 99.6 8.4E-16 1.8E-20 133.2 8.7 149 35-183 405-554 (638)
11 TIGR00990 3a0801s09 mitochondr 99.6 1.5E-14 3.3E-19 130.7 16.8 135 49-183 363-498 (615)
12 TIGR02552 LcrH_SycD type III s 99.6 3.4E-14 7.4E-19 103.6 15.2 106 48-153 14-119 (135)
13 KOG1155 Anaphase-promoting com 99.6 1.6E-14 3.4E-19 121.0 14.6 153 50-202 329-485 (559)
14 KOG4626 O-linked N-acetylgluco 99.6 2.6E-14 5.7E-19 123.4 15.0 134 50-183 285-419 (966)
15 COG3063 PilF Tfp pilus assembl 99.6 1.2E-13 2.5E-18 106.6 16.9 137 49-186 33-173 (250)
16 KOG0543 FKBP-type peptidyl-pro 99.6 7.1E-14 1.5E-18 115.8 16.7 133 47-179 204-353 (397)
17 PRK10370 formate-dependent nit 99.6 1.1E-13 2.3E-18 107.7 14.6 104 49-152 71-177 (198)
18 PRK10370 formate-dependent nit 99.6 1.9E-13 4.2E-18 106.3 15.1 121 64-184 52-176 (198)
19 PRK15359 type III secretion sy 99.6 1.4E-13 3E-18 101.8 13.4 111 71-184 13-124 (144)
20 PRK12370 invasion protein regu 99.5 2.1E-13 4.6E-18 121.7 16.2 135 49-183 336-472 (553)
21 KOG4234 TPR repeat-containing 99.5 4.5E-13 9.7E-18 101.4 15.0 104 49-152 93-201 (271)
22 KOG0548 Molecular co-chaperone 99.5 2.2E-13 4.9E-18 115.8 14.0 112 51-162 2-114 (539)
23 TIGR02521 type_IV_pilW type IV 99.5 1.4E-12 3.1E-17 102.1 17.9 134 50-183 30-166 (234)
24 KOG1155 Anaphase-promoting com 99.5 5.8E-13 1.2E-17 111.7 16.0 134 49-182 362-496 (559)
25 PRK12370 invasion protein regu 99.5 4.4E-13 9.6E-18 119.7 16.4 132 50-181 294-435 (553)
26 TIGR02552 LcrH_SycD type III s 99.5 6.9E-13 1.5E-17 96.6 14.2 114 72-185 4-118 (135)
27 TIGR02521 type_IV_pilW type IV 99.5 1.8E-12 3.9E-17 101.6 17.3 133 49-181 63-198 (234)
28 KOG1126 DNA-binding cell divis 99.5 2.4E-13 5.1E-18 118.1 12.7 134 49-182 487-621 (638)
29 PRK09782 bacteriophage N4 rece 99.5 1.7E-12 3.7E-17 121.6 18.6 129 54-183 579-708 (987)
30 PRK15179 Vi polysaccharide bio 99.5 4.4E-12 9.6E-17 114.9 20.0 134 50-183 85-219 (694)
31 PRK09782 bacteriophage N4 rece 99.5 2.5E-12 5.5E-17 120.5 19.0 133 51-183 609-742 (987)
32 KOG4648 Uncharacterized conser 99.5 2.5E-13 5.4E-18 110.4 10.0 114 45-158 91-205 (536)
33 KOG0547 Translocase of outer m 99.5 1.7E-12 3.8E-17 109.5 15.1 120 47-166 111-232 (606)
34 COG3063 PilF Tfp pilus assembl 99.5 1.9E-12 4.2E-17 99.9 14.1 134 48-181 66-202 (250)
35 TIGR03302 OM_YfiO outer membra 99.5 2.7E-12 5.9E-17 102.3 15.6 134 50-183 32-197 (235)
36 TIGR02795 tol_pal_ybgF tol-pal 99.5 3.5E-12 7.7E-17 90.4 14.6 104 51-154 2-111 (119)
37 PRK15174 Vi polysaccharide exp 99.5 4E-12 8.7E-17 115.6 18.0 131 51-181 246-381 (656)
38 KOG0547 Translocase of outer m 99.5 2.2E-12 4.8E-17 108.9 14.4 137 48-184 323-460 (606)
39 PF13429 TPR_15: Tetratricopep 99.4 7.3E-13 1.6E-17 108.5 10.6 129 53-181 112-243 (280)
40 COG5010 TadD Flp pilus assembl 99.4 5.2E-12 1.1E-16 99.2 14.6 126 50-175 99-225 (257)
41 PRK15174 Vi polysaccharide exp 99.4 7.3E-12 1.6E-16 113.9 17.7 130 55-184 216-350 (656)
42 cd00189 TPR Tetratricopeptide 99.4 3.8E-12 8.3E-17 85.0 11.8 99 53-151 2-100 (100)
43 PF13414 TPR_11: TPR repeat; P 99.4 1E-12 2.2E-17 84.6 8.0 66 51-116 3-69 (69)
44 PRK11189 lipoprotein NlpI; Pro 99.4 8.4E-12 1.8E-16 103.1 14.8 120 65-184 40-164 (296)
45 TIGR03302 OM_YfiO outer membra 99.4 1.8E-11 4E-16 97.5 15.8 132 50-181 69-232 (235)
46 KOG0624 dsRNA-activated protei 99.4 1.8E-11 3.9E-16 99.7 15.5 105 48-152 35-139 (504)
47 PRK11788 tetratricopeptide rep 99.4 3.1E-11 6.7E-16 103.0 17.6 129 54-182 183-312 (389)
48 PRK02603 photosystem I assembl 99.4 2.6E-11 5.6E-16 92.3 15.3 104 49-152 33-153 (172)
49 PF13414 TPR_11: TPR repeat; P 99.4 2.6E-12 5.6E-17 82.7 7.9 67 84-150 2-69 (69)
50 KOG1125 TPR repeat-containing 99.4 3E-12 6.6E-17 109.8 10.5 102 50-151 429-530 (579)
51 TIGR02917 PEP_TPR_lipo putativ 99.4 1.8E-11 4E-16 113.5 16.4 135 48-182 122-257 (899)
52 TIGR02917 PEP_TPR_lipo putativ 99.4 2E-11 4.4E-16 113.2 16.5 132 52-184 737-869 (899)
53 PRK15363 pathogenicity island 99.4 4.7E-11 1E-15 88.0 15.0 105 78-182 27-133 (157)
54 KOG0551 Hsp90 co-chaperone CNS 99.4 2.8E-11 6.1E-16 98.0 14.6 104 49-152 79-186 (390)
55 KOG2076 RNA polymerase III tra 99.4 4.6E-11 1E-15 107.1 17.3 134 50-183 138-272 (895)
56 KOG0550 Molecular chaperone (D 99.4 9.2E-12 2E-16 103.3 11.7 107 49-155 247-357 (486)
57 PLN02789 farnesyltranstransfer 99.4 1.3E-10 2.7E-15 96.7 18.4 125 59-183 45-173 (320)
58 CHL00033 ycf3 photosystem I as 99.4 7.1E-11 1.5E-15 89.5 15.7 104 49-152 33-153 (168)
59 PRK15331 chaperone protein Sic 99.4 3.2E-11 6.9E-16 89.3 13.0 104 48-152 34-137 (165)
60 KOG4642 Chaperone-dependent E3 99.4 9.1E-12 2E-16 96.6 10.5 118 49-166 8-131 (284)
61 KOG1125 TPR repeat-containing 99.3 2.2E-11 4.9E-16 104.6 13.5 129 47-175 315-521 (579)
62 PRK11447 cellulose synthase su 99.3 4.1E-11 8.9E-16 115.4 16.8 129 56-184 274-417 (1157)
63 PF12895 Apc3: Anaphase-promot 99.3 3.7E-12 8.1E-17 85.3 6.9 81 64-145 2-84 (84)
64 PRK11788 tetratricopeptide rep 99.3 9.7E-11 2.1E-15 100.0 17.1 128 53-180 143-277 (389)
65 PRK11447 cellulose synthase su 99.3 8.2E-11 1.8E-15 113.3 18.2 130 54-183 354-526 (1157)
66 PF13429 TPR_15: Tetratricopep 99.3 4E-11 8.6E-16 98.2 12.8 130 50-179 145-275 (280)
67 PRK10803 tol-pal system protei 99.3 1.6E-10 3.4E-15 93.5 16.0 104 51-154 142-252 (263)
68 PRK10049 pgaA outer membrane p 99.3 1.3E-10 2.8E-15 107.6 17.5 128 50-178 48-176 (765)
69 PLN02789 farnesyltranstransfer 99.3 1.7E-10 3.8E-15 95.9 16.0 119 47-165 67-189 (320)
70 PF13432 TPR_16: Tetratricopep 99.3 1.8E-11 3.9E-16 77.8 7.7 64 56-119 2-65 (65)
71 KOG2002 TPR-containing nuclear 99.3 5.2E-11 1.1E-15 107.5 12.4 139 46-184 159-374 (1018)
72 COG4783 Putative Zn-dependent 99.2 7.1E-10 1.5E-14 94.0 17.2 130 50-179 305-435 (484)
73 PF13432 TPR_16: Tetratricopep 99.2 6.9E-11 1.5E-15 75.1 7.4 64 89-152 1-64 (65)
74 COG2956 Predicted N-acetylgluc 99.2 2.1E-09 4.5E-14 87.1 17.3 133 52-184 142-281 (389)
75 COG4235 Cytochrome c biogenesi 99.2 5.7E-10 1.2E-14 89.8 13.6 110 47-156 152-264 (287)
76 KOG0553 TPR repeat-containing 99.2 3.1E-10 6.8E-15 91.0 11.5 102 86-187 82-184 (304)
77 KOG1128 Uncharacterized conser 99.2 1.1E-10 2.4E-15 102.8 9.4 135 49-183 483-618 (777)
78 PF09976 TPR_21: Tetratricopep 99.2 4.7E-09 1E-13 77.6 16.9 130 49-178 9-144 (145)
79 COG1729 Uncharacterized protei 99.2 1.6E-09 3.4E-14 86.3 14.4 105 51-155 141-251 (262)
80 PRK15179 Vi polysaccharide bio 99.2 1.2E-09 2.7E-14 99.1 15.5 106 47-152 116-221 (694)
81 PF14559 TPR_19: Tetratricopep 99.1 1.7E-10 3.8E-15 73.8 7.0 67 61-127 1-67 (68)
82 COG5010 TadD Flp pilus assembl 99.1 2.3E-09 5E-14 84.5 14.2 129 55-183 70-199 (257)
83 PF13525 YfiO: Outer membrane 99.1 6.9E-09 1.5E-13 81.1 17.1 135 50-184 4-173 (203)
84 PF13512 TPR_18: Tetratricopep 99.1 2E-09 4.3E-14 78.1 12.7 103 50-152 9-132 (142)
85 PRK14574 hmsH outer membrane p 99.1 1.6E-09 3.4E-14 100.1 15.3 135 50-184 33-168 (822)
86 KOG4162 Predicted calmodulin-b 99.1 1.7E-09 3.6E-14 95.9 14.7 134 51-184 650-786 (799)
87 PRK10866 outer membrane biogen 99.1 9.4E-09 2E-13 82.5 17.8 103 50-152 31-157 (243)
88 TIGR00540 hemY_coli hemY prote 99.1 4E-09 8.6E-14 91.1 16.5 131 49-179 261-397 (409)
89 KOG4162 Predicted calmodulin-b 99.1 7.5E-10 1.6E-14 98.1 11.8 105 50-154 683-789 (799)
90 COG2956 Predicted N-acetylgluc 99.1 4.7E-09 1E-13 85.1 15.3 138 49-186 178-316 (389)
91 PRK10049 pgaA outer membrane p 99.1 4.6E-09 1E-13 97.4 17.6 132 53-185 17-149 (765)
92 KOG0624 dsRNA-activated protei 99.1 2.1E-09 4.5E-14 87.8 13.3 136 48-183 69-254 (504)
93 KOG0545 Aryl-hydrocarbon recep 99.1 2.5E-09 5.3E-14 83.6 13.2 104 49-152 176-297 (329)
94 KOG0550 Molecular chaperone (D 99.1 7.9E-10 1.7E-14 92.0 11.0 137 48-184 200-353 (486)
95 KOG0376 Serine-threonine phosp 99.1 1.7E-10 3.6E-15 97.8 7.2 113 50-162 3-116 (476)
96 PF13371 TPR_9: Tetratricopept 99.1 6.8E-10 1.5E-14 72.0 8.5 70 58-127 2-71 (73)
97 cd00189 TPR Tetratricopeptide 99.1 2.2E-09 4.8E-14 71.3 11.2 94 87-180 2-96 (100)
98 KOG3060 Uncharacterized conser 99.1 1E-08 2.2E-13 80.5 16.1 133 51-183 86-222 (289)
99 KOG2003 TPR repeat-containing 99.1 4.4E-10 9.5E-15 94.7 8.7 135 49-183 488-623 (840)
100 CHL00033 ycf3 photosystem I as 99.1 4E-09 8.6E-14 79.9 13.1 121 59-179 7-140 (168)
101 PLN03088 SGT1, suppressor of 99.1 3.4E-09 7.3E-14 89.8 13.5 97 88-184 5-102 (356)
102 KOG1173 Anaphase-promoting com 99.1 5.5E-09 1.2E-13 90.0 14.1 130 55-184 384-521 (611)
103 TIGR02795 tol_pal_ybgF tol-pal 99.1 6.3E-09 1.4E-13 73.5 12.4 100 85-184 2-108 (119)
104 COG4783 Putative Zn-dependent 99.0 5.3E-09 1.2E-13 88.8 13.5 104 46-149 335-438 (484)
105 KOG4555 TPR repeat-containing 99.0 1.8E-08 4E-13 71.6 14.0 104 49-152 41-148 (175)
106 PRK10747 putative protoheme IX 99.0 1.6E-08 3.4E-13 87.1 16.6 132 46-180 258-389 (398)
107 KOG2002 TPR-containing nuclear 99.0 1.1E-08 2.4E-13 92.8 15.4 114 51-164 307-426 (1018)
108 PF12688 TPR_5: Tetratrico pep 99.0 1.9E-08 4.1E-13 71.7 13.2 96 52-147 2-103 (120)
109 KOG1129 TPR repeat-containing 99.0 7.2E-10 1.6E-14 90.0 6.2 121 58-178 331-455 (478)
110 TIGR00540 hemY_coli hemY prote 99.0 8.3E-08 1.8E-12 82.9 19.1 132 50-181 83-216 (409)
111 KOG2076 RNA polymerase III tra 99.0 3.3E-08 7.2E-13 89.1 16.8 103 49-151 171-273 (895)
112 PRK14720 transcript cleavage f 99.0 1.7E-08 3.8E-13 93.0 15.3 134 48-184 28-181 (906)
113 PRK02603 photosystem I assembl 99.0 1.9E-08 4.1E-13 76.5 13.3 97 82-178 32-132 (172)
114 PRK14574 hmsH outer membrane p 99.0 1.3E-08 2.8E-13 94.2 14.6 131 56-186 73-203 (822)
115 PRK10153 DNA-binding transcrip 99.0 2.9E-08 6.4E-13 87.7 16.1 136 50-185 338-486 (517)
116 COG4235 Cytochrome c biogenesi 99.0 3.3E-08 7.2E-13 79.7 15.0 119 66-184 137-259 (287)
117 PF09976 TPR_21: Tetratricopep 99.0 1.3E-08 2.9E-13 75.2 11.8 96 50-146 47-145 (145)
118 KOG1156 N-terminal acetyltrans 99.0 1.8E-08 3.9E-13 88.0 14.0 133 52-184 8-141 (700)
119 KOG1173 Anaphase-promoting com 99.0 7.9E-09 1.7E-13 89.0 11.3 132 48-179 309-441 (611)
120 cd05804 StaR_like StaR_like; a 99.0 4.2E-08 9E-13 82.8 15.7 131 51-181 43-215 (355)
121 PF14559 TPR_19: Tetratricopep 98.9 5.8E-09 1.3E-13 66.6 7.4 65 95-159 1-66 (68)
122 PF13371 TPR_9: Tetratricopept 98.9 8.7E-09 1.9E-13 66.8 8.1 64 92-155 2-65 (73)
123 PRK11906 transcriptional regul 98.9 7.5E-08 1.6E-12 82.1 15.8 134 53-186 257-406 (458)
124 PRK10747 putative protoheme IX 98.9 2.5E-07 5.5E-12 79.6 19.2 134 49-183 82-218 (398)
125 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 8.9E-09 1.9E-13 87.6 9.8 69 46-114 70-141 (453)
126 COG4785 NlpI Lipoprotein NlpI, 98.9 3.2E-08 6.9E-13 76.3 11.7 112 50-161 64-178 (297)
127 PF12895 Apc3: Anaphase-promot 98.9 7.8E-09 1.7E-13 69.1 6.9 79 98-177 2-83 (84)
128 KOG1174 Anaphase-promoting com 98.9 8.2E-08 1.8E-12 80.3 14.1 133 49-181 230-397 (564)
129 PF06552 TOM20_plant: Plant sp 98.9 6.5E-08 1.4E-12 72.6 12.0 90 67-156 7-117 (186)
130 KOG1174 Anaphase-promoting com 98.9 8.7E-08 1.9E-12 80.2 13.6 136 49-184 332-503 (564)
131 KOG3060 Uncharacterized conser 98.9 5.6E-07 1.2E-11 70.9 17.3 172 54-225 55-239 (289)
132 COG4700 Uncharacterized protei 98.9 7.2E-07 1.6E-11 67.4 17.0 131 51-181 89-222 (251)
133 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 8.4E-08 1.8E-12 81.7 13.6 70 80-149 70-142 (453)
134 PRK10803 tol-pal system protei 98.8 1.7E-07 3.8E-12 75.9 14.9 100 85-184 142-249 (263)
135 KOG2003 TPR repeat-containing 98.8 1.8E-07 4E-12 79.2 14.8 133 47-179 554-687 (840)
136 cd05804 StaR_like StaR_like; a 98.8 1E-07 2.2E-12 80.4 13.4 104 49-152 112-219 (355)
137 KOG0495 HAT repeat protein [RN 98.8 2E-07 4.4E-12 81.9 15.0 134 49-183 616-750 (913)
138 KOG1127 TPR repeat-containing 98.8 1.7E-07 3.8E-12 85.5 14.9 134 50-183 491-661 (1238)
139 KOG1840 Kinesin light chain [C 98.8 2.2E-07 4.9E-12 81.3 14.8 134 50-183 240-398 (508)
140 PF12569 NARP1: NMDA receptor- 98.8 5.6E-07 1.2E-11 79.4 17.0 46 50-95 37-82 (517)
141 KOG1129 TPR repeat-containing 98.8 7.4E-08 1.6E-12 78.5 10.5 131 54-184 293-427 (478)
142 KOG1840 Kinesin light chain [C 98.8 2E-07 4.2E-12 81.6 13.9 141 43-183 191-356 (508)
143 PF13424 TPR_12: Tetratricopep 98.8 3.4E-08 7.5E-13 64.8 6.7 66 49-114 3-75 (78)
144 PRK11906 transcriptional regul 98.7 4.2E-07 9E-12 77.7 14.6 127 51-177 295-432 (458)
145 KOG1156 N-terminal acetyltrans 98.7 1.5E-07 3.3E-12 82.4 11.9 136 47-182 37-173 (700)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 7.7E-07 1.7E-11 75.9 16.0 113 63-178 181-294 (395)
147 KOG0543 FKBP-type peptidyl-pro 98.7 1.9E-07 4E-12 78.1 11.4 100 51-150 257-357 (397)
148 KOG0495 HAT repeat protein [RN 98.7 4.1E-07 8.9E-12 80.0 13.5 134 50-183 650-784 (913)
149 PF13424 TPR_12: Tetratricopep 98.7 2.2E-08 4.7E-13 65.8 4.2 67 82-148 2-75 (78)
150 PRK15331 chaperone protein Sic 98.7 5.1E-07 1.1E-11 67.1 11.8 103 79-181 31-134 (165)
151 COG4105 ComL DNA uptake lipopr 98.7 2.8E-06 6.1E-11 67.3 16.4 134 50-183 33-198 (254)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.9E-07 8.4E-12 77.7 12.3 100 51-150 200-299 (395)
153 PF12569 NARP1: NMDA receptor- 98.7 3E-06 6.5E-11 74.9 17.8 134 50-183 193-336 (517)
154 PF12688 TPR_5: Tetratrico pep 98.6 1.4E-06 3.1E-11 62.0 12.6 94 86-179 2-102 (120)
155 PRK10153 DNA-binding transcrip 98.6 6E-07 1.3E-11 79.5 12.7 108 49-157 374-491 (517)
156 COG1729 Uncharacterized protei 98.6 1.3E-06 2.8E-11 69.8 13.1 100 88-187 144-250 (262)
157 KOG1128 Uncharacterized conser 98.6 8.2E-07 1.8E-11 78.9 12.6 130 51-181 424-582 (777)
158 PF13525 YfiO: Outer membrane 98.6 3.3E-06 7.2E-11 65.9 14.2 120 50-169 41-195 (203)
159 PRK10866 outer membrane biogen 98.6 1.1E-05 2.4E-10 64.8 17.3 127 50-176 68-236 (243)
160 PRK14720 transcript cleavage f 98.5 9.2E-07 2E-11 81.9 11.4 99 48-149 62-179 (906)
161 KOG4234 TPR repeat-containing 98.4 8.8E-05 1.9E-09 56.9 18.1 122 53-185 74-201 (271)
162 PF04733 Coatomer_E: Coatomer 98.4 9.7E-06 2.1E-10 66.8 14.1 134 50-183 130-267 (290)
163 PF03704 BTAD: Bacterial trans 98.4 4.2E-05 9E-10 56.3 16.3 99 50-148 5-125 (146)
164 PF13428 TPR_14: Tetratricopep 98.4 6.7E-07 1.5E-11 52.0 5.1 42 86-127 2-43 (44)
165 KOG1127 TPR repeat-containing 98.4 2.8E-06 6.1E-11 77.9 10.8 114 52-165 563-677 (1238)
166 KOG4648 Uncharacterized conser 98.3 3.1E-06 6.8E-11 69.6 9.0 97 88-184 100-197 (536)
167 PF14938 SNAP: Soluble NSF att 98.3 8E-06 1.7E-10 67.1 11.5 132 49-181 33-184 (282)
168 PF13431 TPR_17: Tetratricopep 98.3 6.8E-07 1.5E-11 48.9 3.1 32 108-139 2-33 (34)
169 PF04733 Coatomer_E: Coatomer 98.3 9.9E-06 2.1E-10 66.7 11.2 99 57-155 171-272 (290)
170 PF13431 TPR_17: Tetratricopep 98.3 1.2E-06 2.5E-11 47.9 3.7 34 73-106 1-34 (34)
171 PF05843 Suf: Suppressor of fo 98.3 3.9E-05 8.5E-10 62.9 14.4 129 53-181 3-136 (280)
172 COG3071 HemY Uncharacterized e 98.3 7.8E-05 1.7E-09 62.4 15.6 134 43-179 255-388 (400)
173 KOG2376 Signal recognition par 98.3 4.7E-05 1E-09 66.6 14.8 127 51-184 12-142 (652)
174 COG3071 HemY Uncharacterized e 98.2 0.00042 9.1E-09 58.1 19.4 140 49-188 82-223 (400)
175 PF13428 TPR_14: Tetratricopep 98.2 3.4E-06 7.4E-11 49.0 5.3 42 52-93 2-43 (44)
176 PF00515 TPR_1: Tetratricopept 98.2 2.2E-06 4.7E-11 46.7 4.2 30 87-116 3-32 (34)
177 KOG1915 Cell cycle control pro 98.2 0.00014 3E-09 62.5 15.4 130 50-179 72-201 (677)
178 PF00515 TPR_1: Tetratricopept 98.2 6E-06 1.3E-10 44.9 4.8 34 119-152 1-34 (34)
179 PF07719 TPR_2: Tetratricopept 98.1 6.8E-06 1.5E-10 44.6 4.9 29 88-116 4-32 (34)
180 PF14938 SNAP: Soluble NSF att 98.1 3.5E-05 7.5E-10 63.3 11.1 136 49-184 112-269 (282)
181 KOG1310 WD40 repeat protein [G 98.1 1.2E-05 2.6E-10 69.5 8.5 105 48-152 371-478 (758)
182 PF13512 TPR_18: Tetratricopep 98.1 0.00015 3.3E-09 52.8 13.1 69 84-152 9-80 (142)
183 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00038 8.1E-09 52.9 15.7 132 51-182 95-232 (291)
184 KOG1130 Predicted G-alpha GTPa 98.1 1.4E-05 2.9E-10 67.4 7.4 133 49-181 133-304 (639)
185 KOG2376 Signal recognition par 98.1 0.00022 4.8E-09 62.5 15.0 127 55-184 83-256 (652)
186 PF07719 TPR_2: Tetratricopept 98.1 1.5E-05 3.2E-10 43.2 5.1 34 51-84 1-34 (34)
187 KOG2796 Uncharacterized conser 98.1 0.00017 3.6E-09 57.6 12.7 139 46-184 172-318 (366)
188 PLN03218 maturation of RBCL 1; 98.0 0.00051 1.1E-08 65.9 18.4 126 53-179 616-746 (1060)
189 KOG4555 TPR repeat-containing 98.0 0.00021 4.7E-09 51.1 11.9 92 88-179 46-142 (175)
190 PF06552 TOM20_plant: Plant sp 98.0 0.0002 4.4E-09 54.0 12.2 105 101-206 7-133 (186)
191 PLN03218 maturation of RBCL 1; 98.0 0.00058 1.3E-08 65.5 18.1 55 91-145 585-640 (1060)
192 COG0457 NrfG FOG: TPR repeat [ 98.0 0.0008 1.7E-08 51.0 16.1 124 60-183 139-267 (291)
193 PLN03081 pentatricopeptide (PP 98.0 0.00018 3.8E-09 66.5 14.3 126 51-179 290-418 (697)
194 KOG4340 Uncharacterized conser 98.0 8.9E-05 1.9E-09 60.2 10.4 124 52-175 45-201 (459)
195 KOG3785 Uncharacterized conser 97.9 0.0002 4.3E-09 59.5 11.8 59 52-110 58-116 (557)
196 KOG2053 Mitochondrial inherita 97.9 0.00084 1.8E-08 61.5 15.6 122 59-180 17-138 (932)
197 COG4785 NlpI Lipoprotein NlpI, 97.9 3.9E-05 8.5E-10 59.5 6.0 96 85-180 65-161 (297)
198 KOG1130 Predicted G-alpha GTPa 97.9 6.1E-05 1.3E-09 63.6 7.6 132 50-181 194-344 (639)
199 KOG3785 Uncharacterized conser 97.8 0.00042 9.2E-09 57.6 12.0 87 59-145 30-117 (557)
200 KOG4642 Chaperone-dependent E3 97.8 7.2E-05 1.6E-09 58.8 7.0 90 90-179 15-105 (284)
201 PLN03081 pentatricopeptide (PP 97.8 0.00054 1.2E-08 63.3 14.1 128 52-180 392-556 (697)
202 KOG2610 Uncharacterized conser 97.8 0.00068 1.5E-08 56.0 12.4 127 53-179 105-236 (491)
203 COG3118 Thioredoxin domain-con 97.7 0.0039 8.4E-08 50.7 15.7 132 51-183 134-267 (304)
204 PLN03077 Protein ECB2; Provisi 97.7 0.002 4.3E-08 61.0 16.3 84 93-180 532-617 (857)
205 KOG0545 Aryl-hydrocarbon recep 97.7 0.0013 2.9E-08 52.1 12.5 102 85-186 178-298 (329)
206 PF13181 TPR_8: Tetratricopept 97.7 8.4E-05 1.8E-09 40.2 4.0 27 89-115 5-31 (34)
207 PF04184 ST7: ST7 protein; In 97.7 0.0012 2.5E-08 57.3 12.4 121 56-178 173-321 (539)
208 PLN03077 Protein ECB2; Provisi 97.7 0.0016 3.5E-08 61.6 14.9 120 51-172 554-677 (857)
209 KOG4340 Uncharacterized conser 97.7 0.00012 2.5E-09 59.5 6.0 94 49-142 142-264 (459)
210 PRK10941 hypothetical protein; 97.6 0.0013 2.7E-08 53.6 11.8 67 88-154 184-250 (269)
211 KOG1070 rRNA processing protei 97.6 0.0021 4.5E-08 61.7 14.5 125 55-179 1534-1661(1710)
212 KOG2471 TPR repeat-containing 97.6 0.00015 3.2E-09 62.5 6.3 115 49-163 238-380 (696)
213 KOG1915 Cell cycle control pro 97.6 0.0035 7.5E-08 54.2 14.3 130 50-180 403-535 (677)
214 PF13181 TPR_8: Tetratricopept 97.6 0.00013 2.8E-09 39.5 4.0 33 120-152 2-34 (34)
215 COG2976 Uncharacterized protei 97.6 0.0023 5E-08 49.0 11.9 96 54-151 92-191 (207)
216 PF10300 DUF3808: Protein of u 97.6 0.002 4.4E-08 56.7 13.5 105 64-168 246-356 (468)
217 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0021 4.5E-08 53.0 12.4 89 85-173 81-174 (390)
218 PF09613 HrpB1_HrpK: Bacterial 97.6 0.013 2.9E-07 43.6 15.7 112 50-162 9-120 (160)
219 PRK10941 hypothetical protein; 97.6 0.0014 3.1E-08 53.2 11.1 78 51-128 181-258 (269)
220 KOG2796 Uncharacterized conser 97.6 0.0021 4.5E-08 51.6 11.6 104 49-152 210-319 (366)
221 COG4700 Uncharacterized protei 97.5 0.0074 1.6E-07 46.1 13.8 126 57-183 62-191 (251)
222 PRK04841 transcriptional regul 97.5 0.0072 1.6E-07 57.4 16.7 128 52-179 453-600 (903)
223 PRK04841 transcriptional regul 97.5 0.0073 1.6E-07 57.4 16.6 130 51-180 491-640 (903)
224 PF05843 Suf: Suppressor of fo 97.5 0.0036 7.9E-08 51.4 12.7 103 50-152 34-140 (280)
225 KOG1941 Acetylcholine receptor 97.4 0.0017 3.6E-08 54.3 9.6 129 52-180 123-274 (518)
226 PF03704 BTAD: Bacterial trans 97.4 0.0021 4.6E-08 47.1 9.5 66 49-114 60-125 (146)
227 PF13174 TPR_6: Tetratricopept 97.4 0.00034 7.4E-09 37.3 3.8 30 88-117 3-32 (33)
228 PF04781 DUF627: Protein of un 97.4 0.0026 5.6E-08 44.2 8.8 92 57-148 2-107 (111)
229 PF10300 DUF3808: Protein of u 97.3 0.0017 3.8E-08 57.1 9.8 101 49-149 265-377 (468)
230 COG4105 ComL DNA uptake lipopr 97.3 0.022 4.7E-07 45.6 15.0 124 51-174 71-226 (254)
231 KOG0546 HSP90 co-chaperone CPR 97.3 0.0018 3.8E-08 53.8 8.6 105 50-154 221-344 (372)
232 KOG1586 Protein required for f 97.3 0.022 4.9E-07 45.0 13.9 132 50-182 33-184 (288)
233 PF13174 TPR_6: Tetratricopept 97.2 0.00067 1.4E-08 36.1 3.8 33 52-84 1-33 (33)
234 KOG3824 Huntingtin interacting 97.2 0.0019 4.1E-08 52.9 7.8 79 50-128 115-193 (472)
235 KOG2471 TPR repeat-containing 97.2 0.00054 1.2E-08 59.1 4.7 84 50-133 282-383 (696)
236 KOG2053 Mitochondrial inherita 97.2 0.007 1.5E-07 55.7 11.9 116 49-165 41-158 (932)
237 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0034 7.4E-08 37.8 6.9 32 121-152 3-34 (53)
238 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0031 6.6E-08 38.0 6.7 42 86-127 2-43 (53)
239 COG2976 Uncharacterized protei 97.1 0.053 1.2E-06 41.7 14.5 114 69-182 70-189 (207)
240 KOG1308 Hsp70-interacting prot 97.1 0.00017 3.8E-09 59.4 1.3 88 93-180 122-210 (377)
241 KOG0376 Serine-threonine phosp 97.1 0.0007 1.5E-08 58.2 4.9 97 88-184 7-104 (476)
242 KOG4507 Uncharacterized conser 97.1 0.002 4.2E-08 56.9 7.6 98 57-154 613-711 (886)
243 PF14561 TPR_20: Tetratricopep 97.1 0.011 2.4E-07 39.8 9.7 72 104-175 7-81 (90)
244 KOG4814 Uncharacterized conser 97.1 0.12 2.5E-06 46.6 18.2 99 52-150 355-459 (872)
245 KOG3081 Vesicle coat complex C 97.1 0.05 1.1E-06 43.8 14.6 123 51-175 137-264 (299)
246 KOG3824 Huntingtin interacting 97.1 0.0035 7.5E-08 51.4 8.1 69 89-157 120-189 (472)
247 PF14561 TPR_20: Tetratricopep 97.1 0.0095 2.1E-07 40.1 9.0 66 70-135 7-74 (90)
248 KOG2396 HAT (Half-A-TPR) repea 97.1 0.025 5.5E-07 49.2 13.4 89 68-156 88-178 (568)
249 KOG1586 Protein required for f 97.0 0.023 5E-07 44.9 11.9 102 51-152 113-228 (288)
250 PF13176 TPR_7: Tetratricopept 97.0 0.0017 3.7E-08 35.6 4.2 25 54-78 2-26 (36)
251 smart00028 TPR Tetratricopepti 97.0 0.0011 2.5E-08 34.1 3.4 29 88-116 4-32 (34)
252 PF13176 TPR_7: Tetratricopept 97.0 0.0015 3.3E-08 35.9 4.0 25 88-112 2-26 (36)
253 KOG1070 rRNA processing protei 97.0 0.043 9.4E-07 53.1 15.6 101 49-149 1562-1664(1710)
254 PF12968 DUF3856: Domain of Un 97.0 0.022 4.8E-07 40.2 10.4 95 54-148 12-129 (144)
255 COG4976 Predicted methyltransf 96.9 0.0021 4.5E-08 50.5 4.9 55 98-152 8-62 (287)
256 smart00028 TPR Tetratricopepti 96.8 0.0021 4.6E-08 33.0 3.6 32 120-151 2-33 (34)
257 KOG0530 Protein farnesyltransf 96.8 0.19 4.1E-06 40.6 15.9 122 61-182 53-177 (318)
258 PF15015 NYD-SP12_N: Spermatog 96.8 0.029 6.2E-07 48.0 11.5 94 54-147 179-290 (569)
259 KOG4507 Uncharacterized conser 96.7 0.078 1.7E-06 47.3 14.1 124 55-178 217-343 (886)
260 KOG3081 Vesicle coat complex C 96.7 0.11 2.4E-06 41.9 13.8 70 66-135 188-257 (299)
261 KOG1585 Protein required for f 96.6 0.22 4.8E-06 39.8 14.7 163 52-214 72-258 (308)
262 KOG1585 Protein required for f 96.6 0.18 3.8E-06 40.3 14.1 128 51-178 31-176 (308)
263 TIGR02561 HrpB1_HrpK type III 96.6 0.19 4E-06 37.0 14.3 103 51-154 10-112 (153)
264 COG3118 Thioredoxin domain-con 96.6 0.18 4E-06 41.2 14.2 63 86-148 135-197 (304)
265 KOG3364 Membrane protein invol 96.5 0.098 2.1E-06 37.8 11.1 69 84-152 31-104 (149)
266 COG2912 Uncharacterized conser 96.5 0.032 7E-07 45.0 9.6 69 88-156 184-252 (269)
267 COG4976 Predicted methyltransf 96.4 0.006 1.3E-07 47.9 4.7 61 59-119 3-63 (287)
268 PF08424 NRDE-2: NRDE-2, neces 96.3 0.34 7.4E-06 40.6 15.3 110 72-181 6-131 (321)
269 PF09986 DUF2225: Uncharacteri 96.3 0.063 1.4E-06 42.3 10.2 93 60-152 86-198 (214)
270 PF10602 RPN7: 26S proteasome 96.2 0.11 2.4E-06 39.6 10.8 101 50-150 35-144 (177)
271 PF04184 ST7: ST7 protein; In 96.2 0.1 2.2E-06 45.7 11.3 82 67-148 216-324 (539)
272 PF02259 FAT: FAT domain; Int 96.2 0.37 8E-06 40.3 14.9 114 49-162 144-302 (352)
273 PF13281 DUF4071: Domain of un 96.1 0.22 4.8E-06 42.4 12.9 100 53-152 143-259 (374)
274 KOG1941 Acetylcholine receptor 96.1 0.1 2.2E-06 43.9 10.6 98 52-149 163-276 (518)
275 KOG4814 Uncharacterized conser 96.0 0.15 3.2E-06 45.9 11.8 99 86-184 355-460 (872)
276 PF12862 Apc5: Anaphase-promot 95.9 0.055 1.2E-06 36.6 7.1 57 59-115 6-71 (94)
277 KOG3364 Membrane protein invol 95.9 0.13 2.8E-06 37.2 9.0 76 50-125 31-111 (149)
278 KOG4151 Myosin assembly protei 95.9 0.058 1.3E-06 49.3 9.0 104 49-152 51-160 (748)
279 KOG2047 mRNA splicing factor [ 95.9 0.99 2.1E-05 41.0 16.2 132 49-180 475-614 (835)
280 KOG2047 mRNA splicing factor [ 95.8 0.62 1.3E-05 42.2 14.6 63 52-114 388-454 (835)
281 PF13374 TPR_10: Tetratricopep 95.7 0.031 6.6E-07 31.1 4.4 29 86-114 3-31 (42)
282 COG2912 Uncharacterized conser 95.7 0.12 2.6E-06 41.8 9.2 76 53-128 183-258 (269)
283 PF13281 DUF4071: Domain of un 95.6 0.55 1.2E-05 40.1 13.2 133 50-183 178-336 (374)
284 PF13374 TPR_10: Tetratricopep 95.4 0.05 1.1E-06 30.2 4.7 30 51-80 2-31 (42)
285 PF02259 FAT: FAT domain; Int 95.4 0.32 6.9E-06 40.7 11.5 102 50-151 183-341 (352)
286 KOG3617 WD40 and TPR repeat-co 95.3 0.99 2.2E-05 42.2 14.5 95 85-179 858-994 (1416)
287 COG5191 Uncharacterized conser 95.2 0.063 1.4E-06 44.3 6.0 84 73-156 95-180 (435)
288 PF08631 SPO22: Meiosis protei 95.1 1.3 2.9E-05 36.2 13.9 102 49-150 33-152 (278)
289 PF10579 Rapsyn_N: Rapsyn N-te 95.1 0.35 7.6E-06 31.5 8.1 62 49-110 4-68 (80)
290 PF04781 DUF627: Protein of un 95.0 0.72 1.6E-05 32.2 10.1 62 91-152 2-77 (111)
291 PF07079 DUF1347: Protein of u 95.0 1 2.2E-05 39.2 12.9 130 49-180 377-523 (549)
292 COG0790 FOG: TPR repeat, SEL1 95.0 1.7 3.6E-05 35.6 17.3 112 51-166 109-236 (292)
293 PF04910 Tcf25: Transcriptiona 94.9 1 2.3E-05 38.4 13.1 108 64-175 23-162 (360)
294 KOG2396 HAT (Half-A-TPR) repea 94.8 0.35 7.6E-06 42.4 9.9 75 51-125 105-180 (568)
295 COG3629 DnrI DNA-binding trans 94.8 0.49 1.1E-05 38.7 10.3 80 67-148 137-216 (280)
296 KOG2300 Uncharacterized conser 94.6 1.5 3.2E-05 38.6 12.9 123 50-175 366-508 (629)
297 KOG2610 Uncharacterized conser 94.4 0.48 1E-05 39.7 9.4 92 53-144 139-234 (491)
298 PF10373 EST1_DNA_bind: Est1 D 94.4 0.19 4.2E-06 40.7 7.4 62 70-131 1-62 (278)
299 COG5191 Uncharacterized conser 94.4 0.1 2.2E-06 43.0 5.5 76 50-125 106-182 (435)
300 KOG0529 Protein geranylgeranyl 94.4 0.77 1.7E-05 39.3 10.8 101 63-163 87-194 (421)
301 PF04910 Tcf25: Transcriptiona 94.4 0.85 1.8E-05 38.9 11.3 107 46-152 98-226 (360)
302 PF10602 RPN7: 26S proteasome 94.4 1.3 2.8E-05 33.8 11.2 67 85-151 36-105 (177)
303 COG3898 Uncharacterized membra 94.2 2.5 5.4E-05 36.3 13.2 52 65-116 243-294 (531)
304 PF07079 DUF1347: Protein of u 94.0 0.54 1.2E-05 40.9 9.2 57 52-109 463-519 (549)
305 PF09986 DUF2225: Uncharacteri 94.0 0.94 2E-05 35.6 10.1 78 49-126 116-207 (214)
306 KOG1914 mRNA cleavage and poly 94.0 1.1 2.3E-05 39.9 11.0 66 47-113 16-81 (656)
307 KOG1550 Extracellular protein 94.0 1.4 3E-05 39.9 12.4 98 50-149 243-358 (552)
308 KOG1550 Extracellular protein 93.8 3.4 7.5E-05 37.4 14.7 93 54-150 291-395 (552)
309 PF07720 TPR_3: Tetratricopept 93.8 0.27 5.9E-06 26.9 4.8 18 56-73 6-23 (36)
310 COG3914 Spy Predicted O-linked 93.8 1.7 3.6E-05 39.0 11.9 96 57-152 73-175 (620)
311 PF08631 SPO22: Meiosis protei 93.7 3.3 7.2E-05 33.9 15.8 124 47-181 8-150 (278)
312 COG3914 Spy Predicted O-linked 93.6 3.5 7.5E-05 37.1 13.5 93 66-158 46-142 (620)
313 PF10516 SHNi-TPR: SHNi-TPR; 93.5 0.14 3E-06 28.4 3.3 26 88-113 4-29 (38)
314 COG3629 DnrI DNA-binding trans 93.5 0.99 2.1E-05 37.0 9.6 66 49-114 151-216 (280)
315 PF10516 SHNi-TPR: SHNi-TPR; 93.4 0.19 4.1E-06 27.9 3.7 30 120-149 2-31 (38)
316 KOG3807 Predicted membrane pro 93.3 4.5 9.7E-05 34.1 14.2 98 52-151 185-307 (556)
317 PRK13184 pknD serine/threonine 93.2 0.78 1.7E-05 43.9 9.8 97 55-152 479-585 (932)
318 PF12862 Apc5: Anaphase-promot 93.0 0.65 1.4E-05 31.3 6.8 57 95-151 8-73 (94)
319 PF07720 TPR_3: Tetratricopept 93.0 0.51 1.1E-05 25.8 5.1 33 86-118 2-36 (36)
320 KOG1258 mRNA processing protei 92.8 7 0.00015 35.2 17.5 125 48-172 294-420 (577)
321 PF07721 TPR_4: Tetratricopept 92.8 0.15 3.3E-06 25.5 2.6 17 90-106 6-22 (26)
322 PF08424 NRDE-2: NRDE-2, neces 92.7 3.1 6.8E-05 34.8 11.9 117 67-183 47-185 (321)
323 COG3947 Response regulator con 92.6 0.66 1.4E-05 38.1 7.2 52 92-143 286-337 (361)
324 PF09613 HrpB1_HrpK: Bacterial 92.4 3.6 7.7E-05 30.8 12.3 93 86-179 11-104 (160)
325 PF14863 Alkyl_sulf_dimr: Alky 91.9 0.75 1.6E-05 33.7 6.3 47 53-99 72-118 (141)
326 PF07721 TPR_4: Tetratricopept 91.8 0.27 5.9E-06 24.6 2.8 24 120-143 2-25 (26)
327 PRK15180 Vi polysaccharide bio 91.7 2.8 6.1E-05 37.0 10.4 55 58-112 296-350 (831)
328 PF10373 EST1_DNA_bind: Est1 D 91.5 1.1 2.3E-05 36.3 7.6 61 104-164 1-62 (278)
329 KOG3617 WD40 and TPR repeat-co 91.5 2.4 5.1E-05 39.9 10.1 96 52-147 859-995 (1416)
330 KOG1310 WD40 repeat protein [G 91.1 1.4 3E-05 39.2 8.0 87 98-184 387-477 (758)
331 PF10579 Rapsyn_N: Rapsyn N-te 91.0 2.3 5E-05 27.7 7.1 54 88-141 9-65 (80)
332 smart00386 HAT HAT (Half-A-TPR 90.6 0.89 1.9E-05 23.2 4.3 27 66-92 2-28 (33)
333 PF11207 DUF2989: Protein of u 90.5 4.1 8.8E-05 31.7 9.3 53 85-138 141-197 (203)
334 KOG1839 Uncharacterized protei 90.2 5.7 0.00012 39.0 11.8 128 48-175 970-1122(1236)
335 PF10255 Paf67: RNA polymerase 90.0 0.62 1.3E-05 40.2 5.0 25 121-145 166-190 (404)
336 PF11817 Foie-gras_1: Foie gra 89.9 4.2 9E-05 32.7 9.5 78 68-145 155-244 (247)
337 PF11207 DUF2989: Protein of u 89.9 1.6 3.4E-05 33.9 6.6 55 50-105 140-198 (203)
338 COG4455 ImpE Protein of avirul 89.8 3.6 7.8E-05 32.6 8.5 63 58-120 8-70 (273)
339 KOG1839 Uncharacterized protei 89.4 4.2 9.2E-05 39.8 10.3 132 49-180 930-1085(1236)
340 COG3947 Response regulator con 89.3 2.6 5.7E-05 34.7 7.7 61 52-112 280-340 (361)
341 COG4455 ImpE Protein of avirul 89.2 4.1 9E-05 32.2 8.5 60 94-153 10-69 (273)
342 KOG2300 Uncharacterized conser 89.2 13 0.00029 32.9 12.3 92 50-141 45-149 (629)
343 PRK13184 pknD serine/threonine 89.1 6 0.00013 38.1 11.1 100 50-152 511-624 (932)
344 KOG0686 COP9 signalosome, subu 89.1 3.6 7.7E-05 35.4 8.6 95 52-146 151-256 (466)
345 KOG2041 WD40 repeat protein [G 88.6 8.8 0.00019 35.6 11.2 84 50-145 795-878 (1189)
346 smart00386 HAT HAT (Half-A-TPR 88.6 1.6 3.5E-05 22.2 4.4 30 99-128 1-30 (33)
347 KOG1258 mRNA processing protei 88.5 19 0.00041 32.6 15.6 115 68-182 62-181 (577)
348 PF14863 Alkyl_sulf_dimr: Alky 88.3 2.2 4.7E-05 31.3 6.2 51 85-135 70-120 (141)
349 KOG1914 mRNA cleavage and poly 88.3 19 0.00041 32.4 14.6 118 56-173 371-493 (656)
350 KOG0530 Protein farnesyltransf 88.2 10 0.00022 30.9 10.3 89 64-152 91-180 (318)
351 KOG2581 26S proteasome regulat 87.6 11 0.00025 32.5 10.7 101 52-152 170-280 (493)
352 TIGR03504 FimV_Cterm FimV C-te 87.5 3.7 8E-05 23.5 5.6 25 123-147 3-27 (44)
353 COG0790 FOG: TPR repeat, SEL1 87.5 14 0.00031 30.1 13.2 93 54-151 151-269 (292)
354 PF15015 NYD-SP12_N: Spermatog 87.1 5 0.00011 34.8 8.3 84 92-175 183-285 (569)
355 PF11817 Foie-gras_1: Foie gra 86.8 5.3 0.00012 32.1 8.3 61 52-112 179-245 (247)
356 PF12968 DUF3856: Domain of Un 86.5 9.7 0.00021 27.2 9.0 64 51-114 55-129 (144)
357 PF10345 Cohesin_load: Cohesin 86.2 12 0.00026 34.4 11.1 105 50-154 300-447 (608)
358 KOG0985 Vesicle coat protein c 85.9 32 0.0007 33.6 13.4 61 49-114 1102-1162(1666)
359 PF10952 DUF2753: Protein of u 85.8 11 0.00023 27.0 11.0 98 53-160 3-124 (140)
360 TIGR03504 FimV_Cterm FimV C-te 85.5 2.1 4.7E-05 24.5 3.9 27 88-114 2-28 (44)
361 cd02682 MIT_AAA_Arch MIT: doma 85.4 2.9 6.3E-05 27.0 4.9 30 50-79 5-34 (75)
362 PRK15490 Vi polysaccharide bio 85.3 29 0.00064 31.6 13.0 82 60-143 17-98 (578)
363 PF10255 Paf67: RNA polymerase 84.0 2.2 4.8E-05 36.9 5.0 61 52-113 123-192 (404)
364 KOG0546 HSP90 co-chaperone CPR 83.9 0.91 2E-05 38.1 2.6 77 53-129 277-353 (372)
365 PHA02537 M terminase endonucle 83.1 2.5 5.5E-05 33.6 4.7 103 62-164 94-223 (230)
366 PF07219 HemY_N: HemY protein 82.6 13 0.00028 25.6 7.7 52 49-100 57-108 (108)
367 PF10345 Cohesin_load: Cohesin 82.6 40 0.00086 31.0 17.0 100 49-149 57-169 (608)
368 PF11846 DUF3366: Domain of un 82.4 13 0.00028 28.5 8.4 51 101-152 127-177 (193)
369 PF04212 MIT: MIT (microtubule 82.4 5.1 0.00011 25.1 5.1 30 50-79 4-33 (69)
370 KOG2561 Adaptor protein NUB1, 82.2 34 0.00075 30.0 12.5 126 50-175 162-338 (568)
371 cd02681 MIT_calpain7_1 MIT: do 80.5 5.7 0.00012 25.7 4.8 31 50-80 5-35 (76)
372 PRK15180 Vi polysaccharide bio 80.3 6 0.00013 35.0 6.3 97 56-152 328-424 (831)
373 cd02683 MIT_1 MIT: domain cont 79.6 5.5 0.00012 25.8 4.6 29 51-79 6-34 (77)
374 KOG2422 Uncharacterized conser 79.6 49 0.0011 30.1 13.0 106 45-151 336-451 (665)
375 KOG1464 COP9 signalosome, subu 79.4 34 0.00074 28.2 10.8 50 64-113 40-93 (440)
376 PF04053 Coatomer_WDAD: Coatom 78.8 16 0.00035 32.2 8.6 69 56-137 323-391 (443)
377 COG2909 MalT ATP-dependent tra 78.7 63 0.0014 30.9 15.9 100 50-149 414-527 (894)
378 COG4941 Predicted RNA polymera 78.4 25 0.00055 29.8 9.0 86 66-152 311-398 (415)
379 PF12854 PPR_1: PPR repeat 78.1 6.1 0.00013 20.9 3.8 26 85-110 7-32 (34)
380 KOG2422 Uncharacterized conser 77.1 58 0.0013 29.7 17.0 97 49-145 282-404 (665)
381 PF11846 DUF3366: Domain of un 77.1 13 0.00029 28.4 7.0 49 67-116 127-175 (193)
382 PF02064 MAS20: MAS20 protein 76.5 10 0.00022 27.0 5.6 30 123-152 67-96 (121)
383 PF15469 Sec5: Exocyst complex 76.3 27 0.00058 26.5 8.4 26 133-158 153-179 (182)
384 COG3898 Uncharacterized membra 76.1 52 0.0011 28.6 17.2 119 56-175 89-211 (531)
385 KOG0890 Protein kinase of the 75.9 55 0.0012 34.8 12.1 101 49-151 1668-1787(2382)
386 COG2909 MalT ATP-dependent tra 75.5 43 0.00094 31.9 10.6 86 50-135 457-553 (894)
387 PF09797 NatB_MDM20: N-acetylt 75.4 28 0.0006 29.7 9.1 46 66-111 198-243 (365)
388 cd02678 MIT_VPS4 MIT: domain c 75.2 9.7 0.00021 24.4 4.9 30 50-79 5-34 (75)
389 KOG4563 Cell cycle-regulated h 74.6 19 0.00041 30.7 7.4 57 49-105 39-103 (400)
390 cd02680 MIT_calpain7_2 MIT: do 73.9 8.6 0.00019 24.8 4.2 30 51-80 6-35 (75)
391 KOG2041 WD40 repeat protein [G 73.5 72 0.0016 30.0 11.2 80 86-177 797-877 (1189)
392 KOG3783 Uncharacterized conser 72.5 58 0.0013 29.3 10.2 66 87-152 451-524 (546)
393 PF04053 Coatomer_WDAD: Coatom 72.3 69 0.0015 28.3 11.9 77 54-146 298-374 (443)
394 cd02680 MIT_calpain7_2 MIT: do 71.1 9.9 0.00021 24.5 4.0 18 97-114 18-35 (75)
395 smart00745 MIT Microtubule Int 71.0 14 0.00031 23.5 4.9 29 51-79 8-36 (77)
396 PF02064 MAS20: MAS20 protein 70.9 20 0.00044 25.4 6.0 33 51-83 63-95 (121)
397 cd02682 MIT_AAA_Arch MIT: doma 70.9 25 0.00055 22.7 8.5 13 140-152 34-46 (75)
398 PF09205 DUF1955: Domain of un 70.6 39 0.00085 24.7 7.5 62 88-149 88-150 (161)
399 TIGR02561 HrpB1_HrpK type III 70.6 41 0.00089 24.9 11.8 81 87-167 12-93 (153)
400 cd02684 MIT_2 MIT: domain cont 70.0 14 0.00029 23.8 4.6 30 50-79 5-34 (75)
401 PF02184 HAT: HAT (Half-A-TPR) 69.5 11 0.00025 19.9 3.3 25 101-126 3-27 (32)
402 COG5107 RNA14 Pre-mRNA 3'-end 69.2 43 0.00093 29.7 8.5 70 45-114 36-105 (660)
403 cd02683 MIT_1 MIT: domain cont 69.1 28 0.00061 22.5 7.4 15 138-152 32-46 (77)
404 cd02677 MIT_SNX15 MIT: domain 68.7 14 0.00031 23.7 4.5 30 50-79 5-34 (75)
405 PF04212 MIT: MIT (microtubule 68.7 26 0.00055 21.8 5.7 17 130-146 16-32 (69)
406 KOG0529 Protein geranylgeranyl 68.3 81 0.0018 27.4 14.8 114 50-163 27-156 (421)
407 COG4649 Uncharacterized protei 68.2 53 0.0011 25.3 12.3 127 53-180 60-195 (221)
408 PF01535 PPR: PPR repeat; Int 67.2 10 0.00022 18.7 3.0 18 93-110 8-25 (31)
409 cd02656 MIT MIT: domain contai 67.0 20 0.00042 22.8 4.9 29 51-79 6-34 (75)
410 PF09205 DUF1955: Domain of un 66.3 49 0.0011 24.2 7.4 116 58-178 9-146 (161)
411 KOG0985 Vesicle coat protein c 65.4 1.5E+02 0.0032 29.4 12.7 26 119-144 1104-1129(1666)
412 COG4649 Uncharacterized protei 65.3 61 0.0013 24.9 13.7 97 51-147 94-195 (221)
413 KOG2114 Vacuolar assembly/sort 64.4 36 0.00079 32.3 7.6 81 50-136 367-448 (933)
414 cd00280 TRFH Telomeric Repeat 62.9 26 0.00057 26.9 5.5 29 59-88 119-147 (200)
415 KOG3616 Selective LIM binding 61.4 47 0.001 31.4 7.7 114 55-178 677-817 (1636)
416 PRK11619 lytic murein transgly 61.2 1.4E+02 0.0031 27.8 11.1 56 92-147 319-374 (644)
417 PF10952 DUF2753: Protein of u 61.2 48 0.001 23.8 6.1 59 88-146 4-77 (140)
418 KOG1464 COP9 signalosome, subu 61.0 34 0.00074 28.2 6.1 93 57-149 151-261 (440)
419 COG2015 Alkyl sulfatase and re 60.1 29 0.00064 30.8 6.0 54 51-104 452-505 (655)
420 PF06957 COPI_C: Coatomer (COP 60.1 1.2E+02 0.0026 26.6 10.8 104 50-153 203-334 (422)
421 PF09797 NatB_MDM20: N-acetylt 60.0 28 0.00062 29.6 6.0 44 100-143 198-241 (365)
422 smart00671 SEL1 Sel1-like repe 59.9 23 0.00049 18.3 3.7 11 101-111 21-31 (36)
423 PF13226 DUF4034: Domain of un 59.5 99 0.0021 25.4 10.7 111 58-168 7-149 (277)
424 TIGR00756 PPR pentatricopeptid 59.1 22 0.00048 17.8 3.8 20 92-111 7-26 (35)
425 PF12739 TRAPPC-Trs85: ER-Golg 59.1 1.2E+02 0.0027 26.4 11.8 97 52-148 209-329 (414)
426 PF13041 PPR_2: PPR repeat fam 59.0 32 0.00069 19.6 5.9 26 54-79 6-31 (50)
427 PF08238 Sel1: Sel1 repeat; I 59.0 26 0.00055 18.5 4.1 13 135-147 24-36 (39)
428 COG5536 BET4 Protein prenyltra 58.3 96 0.0021 25.7 8.2 111 54-164 113-239 (328)
429 COG5091 SGT1 Suppressor of G2 57.8 82 0.0018 25.9 7.7 92 61-152 5-112 (368)
430 TIGR00985 3a0801s04tom mitocho 57.5 30 0.00064 25.6 4.9 36 124-159 95-132 (148)
431 smart00299 CLH Clathrin heavy 57.2 67 0.0015 22.8 8.9 47 62-109 18-64 (140)
432 COG3014 Uncharacterized protei 56.9 1.3E+02 0.0027 25.8 10.4 115 54-168 61-243 (449)
433 cd02679 MIT_spastin MIT: domai 55.1 36 0.00077 22.2 4.5 16 66-81 4-19 (79)
434 KOG0687 26S proteasome regulat 54.8 1.3E+02 0.0029 25.5 13.5 99 51-149 104-211 (393)
435 PF13812 PPR_3: Pentatricopept 54.3 28 0.00061 17.5 4.1 20 91-110 7-26 (34)
436 KOG2581 26S proteasome regulat 53.7 1.6E+02 0.0034 25.9 11.0 67 53-119 211-281 (493)
437 KOG0276 Vesicle coat complex C 53.3 1.2E+02 0.0027 28.0 8.7 47 60-111 646-692 (794)
438 PF12583 TPPII_N: Tripeptidyl 52.8 85 0.0018 22.7 6.3 42 50-91 75-116 (139)
439 PF03745 DUF309: Domain of unk 52.8 53 0.0011 20.2 6.9 53 55-107 3-61 (62)
440 KOG3807 Predicted membrane pro 52.3 1.5E+02 0.0033 25.3 8.7 94 89-184 188-307 (556)
441 COG5107 RNA14 Pre-mRNA 3'-end 52.1 1.8E+02 0.0038 26.1 11.5 119 53-171 399-521 (660)
442 KOG3783 Uncharacterized conser 51.9 1.8E+02 0.004 26.3 10.6 81 68-150 250-334 (546)
443 TIGR00985 3a0801s04tom mitocho 51.8 61 0.0013 23.9 5.7 34 50-83 89-123 (148)
444 KOG3616 Selective LIM binding 51.6 99 0.0022 29.4 8.1 26 86-111 766-791 (1636)
445 PRK15490 Vi polysaccharide bio 50.9 1.6E+02 0.0034 27.1 9.2 84 92-176 15-98 (578)
446 PF09670 Cas_Cas02710: CRISPR- 50.7 1.6E+02 0.0036 25.3 14.2 64 51-114 131-198 (379)
447 PF08969 USP8_dimer: USP8 dime 48.5 56 0.0012 22.7 5.0 32 49-80 36-67 (115)
448 PF13226 DUF4034: Domain of un 47.3 1.5E+02 0.0032 24.5 7.9 68 69-136 61-150 (277)
449 PF04190 DUF410: Protein of un 46.7 1.6E+02 0.0034 23.9 11.3 94 50-143 9-114 (260)
450 PF01239 PPTA: Protein prenylt 46.0 41 0.0009 17.1 4.6 19 107-125 5-23 (31)
451 COG4259 Uncharacterized protei 45.6 86 0.0019 21.6 5.2 37 117-153 70-106 (121)
452 KOG0739 AAA+-type ATPase [Post 45.0 1.5E+02 0.0033 25.0 7.5 13 68-80 8-20 (439)
453 KOG0889 Histone acetyltransfer 43.6 4E+02 0.0087 30.3 11.7 77 85-161 2812-2896(3550)
454 cd02679 MIT_spastin MIT: domai 43.6 53 0.0011 21.4 3.9 16 100-115 4-19 (79)
455 cd00280 TRFH Telomeric Repeat 43.3 90 0.0019 24.1 5.6 33 94-127 120-152 (200)
456 smart00745 MIT Microtubule Int 42.4 87 0.0019 19.8 6.3 13 139-151 35-47 (77)
457 cd00215 PTS_IIA_lac PTS_IIA, P 42.3 66 0.0014 21.8 4.4 30 50-79 14-43 (97)
458 KOG4563 Cell cycle-regulated h 42.1 59 0.0013 27.9 4.9 54 88-141 44-105 (400)
459 PF04190 DUF410: Protein of un 42.1 1.9E+02 0.004 23.5 11.8 103 62-179 1-117 (260)
460 COG4941 Predicted RNA polymera 41.7 2.1E+02 0.0046 24.5 7.9 63 65-127 343-407 (415)
461 KOG2758 Translation initiation 41.7 1.6E+02 0.0034 25.1 7.1 75 71-145 115-193 (432)
462 PF07219 HemY_N: HemY protein 41.7 1.1E+02 0.0025 20.9 6.8 45 89-133 63-107 (108)
463 KOG0739 AAA+-type ATPase [Post 41.3 2E+02 0.0042 24.4 7.6 30 50-79 9-38 (439)
464 TIGR02710 CRISPR-associated pr 41.1 2.4E+02 0.0052 24.4 12.3 58 52-109 131-195 (380)
465 PF14852 Fis1_TPR_N: Fis1 N-te 41.0 58 0.0013 17.5 3.2 13 87-99 3-15 (35)
466 TIGR00823 EIIA-LAC phosphotran 41.0 71 0.0015 21.8 4.4 30 50-79 16-45 (99)
467 PF04840 Vps16_C: Vps16, C-ter 40.9 2.2E+02 0.0047 23.9 8.4 105 58-178 184-288 (319)
468 KOG2908 26S proteasome regulat 40.4 2.3E+02 0.0051 24.2 8.5 85 64-149 88-187 (380)
469 smart00101 14_3_3 14-3-3 homol 40.4 1.3E+02 0.0029 24.2 6.6 44 69-112 146-198 (244)
470 cd02678 MIT_VPS4 MIT: domain c 40.2 97 0.0021 19.6 6.7 12 140-151 34-45 (75)
471 PRK09591 celC cellobiose phosp 39.9 75 0.0016 21.9 4.4 30 50-79 19-48 (104)
472 COG5187 RPN7 26S proteasome re 39.9 2.3E+02 0.0049 23.8 10.3 82 68-149 92-185 (412)
473 PF02255 PTS_IIA: PTS system, 39.7 82 0.0018 21.3 4.5 30 50-79 13-42 (96)
474 KOG1538 Uncharacterized conser 39.2 1E+02 0.0022 28.8 6.2 49 96-148 784-833 (1081)
475 smart00299 CLH Clathrin heavy 39.0 1.4E+02 0.003 21.1 8.7 49 94-143 16-64 (140)
476 KOG0276 Vesicle coat complex C 38.5 3E+02 0.0064 25.7 8.8 83 50-145 665-747 (794)
477 COG3014 Uncharacterized protei 38.5 2.6E+02 0.0056 24.1 10.7 76 73-148 43-154 (449)
478 PF09670 Cas_Cas02710: CRISPR- 38.1 2.4E+02 0.0053 24.2 8.3 96 53-149 171-271 (379)
479 PF15297 CKAP2_C: Cytoskeleton 37.7 2.6E+02 0.0056 23.9 8.6 31 120-150 141-171 (353)
480 COG5536 BET4 Protein prenyltra 37.0 1.2E+02 0.0027 25.1 5.8 92 67-158 90-190 (328)
481 KOG2114 Vacuolar assembly/sort 36.4 3.1E+02 0.0067 26.5 8.8 57 57-114 340-397 (933)
482 COG5159 RPN6 26S proteasome re 36.0 1.9E+02 0.0041 24.2 6.8 91 57-147 131-234 (421)
483 PF12753 Nro1: Nuclear pore co 35.7 97 0.0021 26.9 5.3 32 101-134 334-365 (404)
484 PRK10454 PTS system N,N'-diace 35.4 93 0.002 21.9 4.4 30 50-79 30-59 (115)
485 KOG4056 Translocase of outer m 35.3 1.8E+02 0.0038 21.3 7.0 37 50-86 80-116 (143)
486 KOG1497 COP9 signalosome, subu 34.7 2.9E+02 0.0062 23.5 14.0 79 51-130 103-191 (399)
487 PF04010 DUF357: Protein of un 34.5 1E+02 0.0023 19.8 4.2 30 48-77 32-61 (75)
488 PF10858 DUF2659: Protein of u 34.4 2.1E+02 0.0045 21.8 11.7 99 53-151 95-203 (220)
489 PF12583 TPPII_N: Tripeptidyl 34.3 1.8E+02 0.0039 21.1 5.7 36 96-131 87-122 (139)
490 KOG4056 Translocase of outer m 34.1 1.2E+02 0.0026 22.2 4.7 29 124-152 86-114 (143)
491 KOG0292 Vesicle coat complex C 33.8 4.7E+02 0.01 25.7 11.8 108 49-156 989-1121(1202)
492 cd02684 MIT_2 MIT: domain cont 33.6 1.3E+02 0.0028 19.2 7.4 13 139-151 33-45 (75)
493 KOG4521 Nuclear pore complex, 33.2 3.3E+02 0.0071 27.5 8.7 113 53-169 922-1071(1480)
494 COG5187 RPN7 26S proteasome re 32.4 3.1E+02 0.0066 23.1 12.8 103 49-151 113-224 (412)
495 KOG0890 Protein kinase of the 32.0 6.1E+02 0.013 27.8 10.7 64 84-149 1669-1732(2382)
496 cd02656 MIT MIT: domain contai 31.2 1.4E+02 0.003 18.8 6.4 10 142-151 36-45 (75)
497 PF12753 Nro1: Nuclear pore co 30.6 71 0.0015 27.7 3.7 32 67-100 334-365 (404)
498 COG5600 Transcription-associat 30.6 1.8E+02 0.0039 25.1 6.0 62 90-151 182-252 (413)
499 KOG2997 F-box protein FBX9 [Ge 30.3 1.4E+02 0.0029 25.3 5.1 41 49-89 17-57 (366)
500 PF15297 CKAP2_C: Cytoskeleton 29.9 3.6E+02 0.0077 23.1 8.0 66 52-117 103-172 (353)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=9.1e-20 Score=145.03 Aligned_cols=122 Identities=34% Similarity=0.450 Sum_probs=112.6
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
+....++.+...|+.+++.++|++|+..|.+||.++|+++.+|++++.+|.++|+++.|+++|+.+|.+||.++++|.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhhhh
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDEEIGM-ALKKVEPNARR 167 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~l~~~~~~~~~ 167 (227)
|.+|..+|++..|+..|++++.++|+|++++ .|......+++
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999996544 66555544444
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.2e-18 Score=145.94 Aligned_cols=151 Identities=25% Similarity=0.341 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+...+..|+.+|+.|+|..|+..|+++|..+|+++.+|.|+|.||.+++++..|+.+++.+++++|++.++|++.|.+
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA 435 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHhhhh
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQRKQAGADREALSGLR 207 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (227)
+..+.+|+.|+..|+++++.+|.+ +....+.++.... .. ....++..++.+.||++..+|+
T Consensus 436 l~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~-----------------~~-~~~~ee~~~r~~~dpev~~il~ 497 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ-----------------RG-DETPEETKRRAMADPEVQAILQ 497 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-----------------hc-CCCHHHHHHhhccCHHHHHHHc
Confidence 999999999999999999999987 4444444443322 11 1111455666899999999999
Q ss_pred hhhhhhhhhh
Q 041967 208 DGMASDFFSL 217 (227)
Q Consensus 208 ~~~~~~~~~~ 217 (227)
||.++.|+..
T Consensus 498 d~~m~~~l~q 507 (539)
T KOG0548|consen 498 DPAMRQILEQ 507 (539)
T ss_pred CHHHHHHHHH
Confidence 9999966654
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.74 E-value=1.9e-16 Score=117.17 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
..++..|..++..|++++|+.+|.+++..+|.++.+++++|.++...|++++|+..|++++.++|.++.+++++|.++..
T Consensus 25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967 132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA 165 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~ 165 (227)
+|++++|+..|.+++.+.|++ ..+...+.+....
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999998 5565655555433
No 4
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=2.5e-17 Score=133.04 Aligned_cols=175 Identities=57% Similarity=0.863 Sum_probs=165.0
Q ss_pred chhhhhhhhccCCCCCCCCCCCCCcCCCCCCccccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 041967 10 DDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYA 89 (227)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 89 (227)
++++.+|++++...+++++++++++.+++....++++.-+.+......+...+..|.++.|++.|..+|.++|..+..+.
T Consensus 73 e~s~~~~~~~~d~egviepd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~ 152 (377)
T KOG1308|consen 73 EVSSPESDLEIDGEGVIEPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYA 152 (377)
T ss_pred CCCCCCcchhccCCCccccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcc
Confidence 34457788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHH
Q 041967 90 ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQ 169 (227)
Q Consensus 90 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~ 169 (227)
.++.++++++....|+.+|..++.++|+....|-..|.+...+|.+..|...+..+.+++-+......+.++..+.+.++
T Consensus 153 kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~ 232 (377)
T KOG1308|consen 153 KRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIE 232 (377)
T ss_pred cccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 041967 170 EHRRKYERLRKEREL 184 (227)
Q Consensus 170 ~a~~~~~~~~~~~~~ 184 (227)
+....+++.....+.
T Consensus 233 e~~~k~er~~~e~~~ 247 (377)
T KOG1308|consen 233 EHRRKYERAREEREI 247 (377)
T ss_pred hchhHHHHHHHHhcc
Confidence 999999887766655
No 5
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=6.5e-15 Score=121.62 Aligned_cols=131 Identities=19% Similarity=0.134 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+..++.+|..+...|++.+|+..|++++.++|+++.+|+++|.++...|++++|+..|+++++++|++..+|+++|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
+...|++++|+..|.++++++|++........+....++..+|...+.+..
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999999998532222223345567888888885543
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.66 E-value=8.4e-16 Score=132.53 Aligned_cols=136 Identities=19% Similarity=0.139 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..++++.++|+.+...|.++.|+.+|.++++..|..+.+..|+|.+|.++|++++|+.+|+.+|++.|....++.++|.+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 45677777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|..+|+...|+++|.+|+.++|.. ++..+|+.++...|++.+|...|+.+.+.++.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 888888888888888888888877 66778888888888888888888777766653
No 7
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.65 E-value=7e-15 Score=124.26 Aligned_cols=114 Identities=28% Similarity=0.369 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
..+...|..++..|+|.+|+.+|.++|.++|+++.+|+++|.+++.+|+++.|+.++++++.++|.++.+|+++|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967 132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA 165 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~ 165 (227)
+|++++|+..|++++.++|++ .....+..+...+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998 5555555554433
No 8
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.65 E-value=1e-14 Score=107.28 Aligned_cols=103 Identities=11% Similarity=-0.062 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
++..+.++..|..++..|++++|+..|+....++|.++..|+++|.|+..+|++.+|+..|.+++.++|+++..+++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Q 041967 128 ARARLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p 150 (227)
|+...|+.+.|.+.|+.++...-
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998873
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.64 E-value=1.5e-14 Score=130.72 Aligned_cols=135 Identities=23% Similarity=0.265 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+..+..+|..++..|++++|+..|++++.++|.+..+|+.+|.++...|++++|+..|++++.++|+++.+|+.+|.+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45567888888888889999999999999988888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+...|++++|+.+|++++.++|++ ..+..++.++...|++.+|...+++..+..+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 888888888888888888888887 6677888888888888888888877766544
No 10
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=8.4e-16 Score=133.16 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=136.0
Q ss_pred CCCCCCccccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 35 KMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
+++...+.+++..++.++.|...|+++..+++++.|+++|++|+.++|..+.+|..+|.=+.....+++|..+|+.||..
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 44555667777778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 115 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+|.+-.+||-+|.+|.++++++.|.-+|++|+.++|.+ .+...++.++.+.|..++|...++++...++
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999 4466899999999999999999988875544
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=1.5e-14 Score=130.72 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.....++.+|..++..|++++|+..|.+++..+|+++.+++.+|.+++..|++++|+.+|++++.++|++..+++.+|.+
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+..+|++++|+..|.+++..+|.+ .++..++.++...|++.+|...|++.....+
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998 7788999999999999999999988776543
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.62 E-value=3.4e-14 Score=103.58 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
+......+..|..++..|++++|+..|++++..+|.++.+++++|.+++..|++.+|+..+++++..+|+++..++.+|.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 93 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDEE 153 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~~ 153 (227)
++...|+++.|+..|+++++++|++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999873
No 13
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.6e-14 Score=120.97 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.++...-+|+.|...++.++|+.+|++|+++||....+|..+|.=|+.+++...|+..|++|+.++|.+-++||.+|++|
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 34566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH---HHHHHHHHHhhhcHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN---FERERQRKQAGADREA 202 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 202 (227)
..++.+.=|+-+|++|+.+.|.| .+|..||.++.++++..+|.++|++...-..... ....+..++...+.++
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999 8899999999999999999999988775433211 1115555555554443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.60 E-value=2.6e-14 Score=123.45 Aligned_cols=134 Identities=18% Similarity=0.094 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+.++-++|.+|+.+|+.+-||.+|+++|++.|+.+.+|.|+|.++-..|+..+|..+|.+++.++|+++.+.+++|.++
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.++|.++.|...|.+++.++|.. ....+|+.++.+.|++.+|...|+...+.++
T Consensus 365 ~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 55555555555555555555554 3334555555555555555555544444433
No 15
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.60 E-value=1.2e-13 Score=106.61 Aligned_cols=137 Identities=19% Similarity=0.130 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+.+...+|.-|+..|++..|...+++||+.+|++..+|..++..|...|+.+.|.+.|++|+.++|++.+++.+.|--
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC---h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967 129 RARLGQWEEAANDLHVASKLDYD---E-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN 186 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (227)
++.+|++++|..+|++|+.. |. . .++.+++.|..+.|+...+...+++....++...
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 99999999999999999875 33 3 6788999999999999999999999888777543
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.1e-14 Score=115.80 Aligned_cols=133 Identities=26% Similarity=0.312 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~~a 111 (227)
....+......|+.+|+.|+|..|...|.+++..=..+ ..++.|++.|+.+++.|..|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 44677889999999999999999999999998753321 358899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHH-HHHHHH
Q 041967 112 LETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRR-KYERLR 179 (227)
Q Consensus 112 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 179 (227)
|.++|.|.+++|+.|.++..+|+|+.|+..|+++++++|.| .+...+..+..+..+..+..+ .|..+.
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 777788888777777665533 344444
No 17
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=1.1e-13 Score=107.73 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--cHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVY-VKLNK--PNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
+.++.|+.+|..+...|++++|+..|.+++.++|+++.++.++|.++ ...|+ +.+|+..++++++.+|+++.+++.+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 34556666666666666666666666666666666666666666653 44454 3666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
|.+++..|++++|+.+|++++++.|.+
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 666666666666666666666666554
No 18
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.56 E-value=1.9e-13 Score=106.32 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 041967 64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR-ARLGQ--WEEAAN 140 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 140 (227)
.++.++++..+.+++..+|+++..|+.+|.+|...|+++.|+..|++++.++|+++.++..+|.++ ...|+ +.+|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999985 77787 599999
Q ss_pred HHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 141 DLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 141 ~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.+.++++.+|++ .++..++......|++.+|...|+++.+..+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999 78889999999999999999999999877665
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=1.4e-13 Score=101.81 Aligned_cols=111 Identities=14% Similarity=-0.028 Sum_probs=104.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967 71 IGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 71 ~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 150 (227)
..+|++++..+|++ ++.+|.++...|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|.+++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 151 DE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 151 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++ ..+..++.++...|++.+|...|.+..+..+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99 88889999999999999999999999877665
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=2.1e-13 Score=121.74 Aligned_cols=135 Identities=10% Similarity=-0.058 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
+.+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.++.+
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999988877777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLD-YDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+...|++++|+..+++++... |++ ..+..++.++...|+.++|...+.+.....+
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 888899999999999988875 555 4466788888889999999998877655433
No 21
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=4.5e-13 Score=101.39 Aligned_cols=104 Identities=31% Similarity=0.423 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK 123 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 123 (227)
..+..+...|+.+|.+|+|.+|...|..||.+.|.. ..+|.|+|.|..+++.++.|+..|.++|.++|.+.+++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 346788999999999999999999999999999986 458999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
++|.+|..+..|++|+..|.+.+..+|..
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999985
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.2e-13 Score=115.83 Aligned_cols=112 Identities=36% Similarity=0.442 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
+..+...|+..|..|+|+.|+.+|..+|.++|.+...|.|+..+|...|+|.+|+++..+.+.++|+|+++|.++|..+.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChHH-HHHHHHHH
Q 041967 131 RLGQWEEAANDLHVASKLDYDEEI-GMALKKVE 162 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~~~-~~~l~~~~ 162 (227)
-+|+|++|+..|.+.++.+|+|.. ...+....
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999954 34555554
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=1.4e-12 Score=102.09 Aligned_cols=134 Identities=20% Similarity=0.183 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++.+|..++..|++++|+..+.+++..+|.+..++..+|.++...|++++|+..+++++...|.+..+++.+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCC--Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDY--DE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
...|++++|...|.+++...+ .. ..+..++.++...|++.++...+.+.....+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 888888888888888877532 22 4455677777777888888777776665443
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.8e-13 Score=111.71 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
....+|-..|-.++..++...|+..|..|++++|.+..+|+.+|.+|--++-+.=|+-+|++|+.+.|.++..|..+|.|
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC 441 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
|..+++.++|+++|.+++.....+ .+...++.++.++++..+|...|.+.+..-
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 677799999999999999999998887643
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=4.4e-13 Score=119.70 Aligned_cols=132 Identities=17% Similarity=0.015 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH
Q 041967 50 AANMTKLKAVDLIS---------EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120 (227)
Q Consensus 50 ~~~~~~~~g~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 120 (227)
.+..+..+|.+++. .+++.+|+..++++++++|+++.++..+|.++...|++++|+..|++++.++|+++.
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 373 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD 373 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 45567777766553 345899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
+|+.+|.++...|++++|+..|+++++++|.+ .....+..+....|++++|...+++....
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998 44445555666788999999988777644
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=6.9e-13 Score=96.63 Aligned_cols=114 Identities=12% Similarity=0.032 Sum_probs=107.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 72 GQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 72 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
+.|++++..+|++..+.+.+|.+++..|++++|+..++.++..+|.++.+++.+|.++..+|++++|...|.+++.++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967 152 E-EIGMALKKVEPNARRIQEHRRKYERLRKERELK 185 (227)
Q Consensus 152 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (227)
+ ..+..++.++...|++..|...+++..+..+..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 8 778899999999999999999999888877653
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=1.8e-12 Score=101.58 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN--PDSAKGYKIRG 126 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la 126 (227)
.....+..+|..++..|++++|+..|.+++...|.+..+++++|.++...|++++|+..+++++... |.....++.+|
T Consensus 63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999864 45677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
.++...|+++.|...|.+++..+|.+ ..+..++.++...|++.++...+++....
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998 67789999999999999999999887765
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.4e-13 Score=118.14 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
+...+||.+|.+|+++++++.|.-.|++|+.++|.+......+|..+.+.|+.++|+..+++|+.++|.++-..|..|.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 56788899999999999999999999999999998888888889999999999999999999999999999888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
++.++++++|+..++++..+-|++ .+...++.++.+.|+...|...|--+...+
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 999999999999999999999988 667788899888888888888875554433
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.50 E-value=1.7e-12 Score=121.62 Aligned_cols=129 Identities=22% Similarity=0.196 Sum_probs=82.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 133 (227)
+..++......|++++|+..|.+++..+|+ +.++.++|.++.+.|++++|+..|++++.++|+++.++.++|.++...|
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 333444444556666666666666666664 6666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 134 QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 134 ~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
++++|+..|.++++++|++ ..+..++.++...|++.+|...++++....+
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6666666666666666666 5555666666666666666666666655544
No 30
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=4.4e-12 Score=114.86 Aligned_cols=134 Identities=10% Similarity=-0.000 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+++++.+|......|.+++|...+..++.++|++..++.+++.++.+.+++++|+..+++++..+|++..+++.+|.++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..+|++++|+..|++++..+|++ ..+..++..+...|+.++|...|++......
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999987 7888999999999999999999988876644
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.49 E-value=2.5e-12 Score=120.47 Aligned_cols=133 Identities=13% Similarity=0.001 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
+..+...|.++.+.|++++|+..|.+++.++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.+|++++|+.+|++++.++|++ .+....+.+.....++..+...+.+......
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8888888888888888888887 6666777777777777777776666554443
No 32
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.48 E-value=2.5e-13 Score=110.36 Aligned_cols=114 Identities=26% Similarity=0.299 Sum_probs=104.7
Q ss_pred HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
+.-......+.+.|+.||++|.|++||.||.+++..+|+++-++.|++.+|++++.|..|..+|+.|+.++..+.++|.+
T Consensus 91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSR 170 (536)
T KOG4648|consen 91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSR 170 (536)
T ss_pred HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 33345566689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDE-EIGMAL 158 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l 158 (227)
+|.+...+|...+|.+.++.++.+.|.+ +....+
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 9999999999999999999999999997 443333
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.7e-12 Score=109.50 Aligned_cols=120 Identities=31% Similarity=0.351 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
....+..+..+|+.+|++|.|++||.+|++||.++|+.+..|.|++.||...|++++.++++.++++++|++++++++++
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA 190 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA 190 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-h-HHHHHHHHHHHhhh
Q 041967 127 MARARLGQWEEAANDLHVASKLDYD-E-EIGMALKKVEPNAR 166 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~-~-~~~~~l~~~~~~~~ 166 (227)
.++..+|++.+|+....-..-++.- | .+...+.+++...+
T Consensus 191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 9999999999999877643333221 2 33445555554443
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=1.9e-12 Score=99.93 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCCHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET--NPDSAKGYKIR 125 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 125 (227)
++...+|..++..|...|+.+.|-+.|.+|+.++|++.+++.|.|..++.+|.|++|.+.|++|+.. .|..+..|-++
T Consensus 66 Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 66 PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 4567899999999999999999999999999999999999999999999999999999999999965 34557899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
|.|..+.|+++.|..+|++++.++|++ .....+.......|++..|+..+++....
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 999999999999999999999999998 77889999999999999999988776543
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.47 E-value=2.7e-12 Score=102.33 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---HHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK---GYK 123 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 123 (227)
.+..++..|..++..|+|++|+..|++++..+|+++ .+++.+|.+++..|++++|+..|+++++.+|+++. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 578999999999999999999999999999999876 57899999999999999999999999999998876 799
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhcCCCh-HHHH-----------------HHHHHHHhhhhHHHHHHHHHH
Q 041967 124 IRGMARARL--------GQWEEAANDLHVASKLDYDE-EIGM-----------------ALKKVEPNARRIQEHRRKYER 177 (227)
Q Consensus 124 ~la~~~~~~--------g~~~~A~~~~~~a~~~~p~~-~~~~-----------------~l~~~~~~~~~~~~a~~~~~~ 177 (227)
.+|.++... |+++.|+..|++++..+|++ ..+. .++.++...|++.+|...+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999987 88999999999999999997 3321 345556667888888888877
Q ss_pred HHHHHH
Q 041967 178 LRKERE 183 (227)
Q Consensus 178 ~~~~~~ 183 (227)
+....+
T Consensus 192 al~~~p 197 (235)
T TIGR03302 192 VVENYP 197 (235)
T ss_pred HHHHCC
Confidence 766544
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.47 E-value=3.5e-12 Score=90.39 Aligned_cols=104 Identities=19% Similarity=0.136 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKI 124 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 124 (227)
++.++..|..++..|++++|+..|.+++..+|++ +.+++.+|.+++..|+++.|+..|+.++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999999886 578999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
+|.++..+|++++|...|.+++...|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999998743
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.47 E-value=4e-12 Score=115.57 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLED----AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
+..++.+|..++..|++++ |+..|++++..+|+++.++.++|.++...|++++|+..+++++.++|+++.++..+|
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3445555555555555553 555566666666655555556666666666666666666666666666655555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
.++...|++++|+..|.+++..+|.+ .....++.++...|+..+|...|+++.+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666666666666666665555555 22223444555555555555555555444
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.2e-12 Score=108.87 Aligned_cols=137 Identities=26% Similarity=0.277 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
...++++...|..+|-.|++-.|...|+++|.++|.....|..+|..|....+.++...+|..|..++|.++.+|+-+|+
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+++-+++|++|+..|++++.++|.+ -..-.++-...+.+.+.+....|+...+..+.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~ 460 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN 460 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998 44456666667777788888877777666554
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=7.3e-13 Score=108.48 Aligned_cols=129 Identities=25% Similarity=0.249 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLN--PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
.+......+...++++++...+.++.... +.++.+|..+|.++.+.|++++|+.+++++++++|+++.++..++.++.
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI 191 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 33334444444455555555544443322 3344444555555555555555555555555555555554444444444
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
..|+++++...+.......|++ ..+..++.++..+|+..+|...+++..+.
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 4454444444444444444333 33444444444445555555554444443
No 40
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=5.2e-12 Score=99.25 Aligned_cols=126 Identities=20% Similarity=0.152 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....+...|...+..|+|..|+..+.++..+.|+++.+|..+|.+|.+.|+++.|...|.+++++.|..+.++.++|..|
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 34566669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
.-.|++++|.+.+..+....+.+ .+..++..+....|++.+|....
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999999998877 88889999999999999888766
No 41
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.44 E-value=7.3e-12 Score=113.88 Aligned_cols=130 Identities=19% Similarity=0.151 Sum_probs=121.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA----AIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...|..++..|++++|+..|.+++..+|+++.+++++|.++...|++++ |+..|++++.++|++..++..+|.++.
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 4557888999999999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
..|++++|+..|++++.++|++ .+...++.++...|++.+|...++++....+.
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999998 67779999999999999999999888766554
No 42
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.43 E-value=3.8e-12 Score=85.00 Aligned_cols=99 Identities=32% Similarity=0.382 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 132 (227)
.++..|..++..|++++|+..+.+++...|.+..+++.+|.++...+++++|+..|++++...|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 041967 133 GQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~ 151 (227)
|+++.|...+.+++..+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988873
No 43
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.42 E-value=1e-12 Score=84.63 Aligned_cols=66 Identities=30% Similarity=0.325 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCC
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNP 116 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p 116 (227)
+..|+..|..++..|+|++|+.+|.+++.++|+++.+++++|.++..+| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5667777777777777777777777777777777777777777777777 57777777777777766
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=8.4e-12 Score=103.11 Aligned_cols=120 Identities=18% Similarity=0.126 Sum_probs=109.1
Q ss_pred CCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 041967 65 GKLEDAIGQLTEAIMLNP---T-SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAN 140 (227)
Q Consensus 65 ~~~~~A~~~~~~al~~~p---~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 140 (227)
+..+.++..+.++|...| . .+.+|+++|.+|...|++..|+..|++++.++|+++.+|+.+|.++...|+++.|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 466788999999996443 3 367899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 141 DLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 141 ~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.|.++++++|++ .++..++.++...|++.+|...+++..+..+.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999999998 77889999999999999999999888876554
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.40 E-value=1.8e-11 Score=97.52 Aligned_cols=132 Identities=15% Similarity=0.039 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCcHHHHHHHHHHHHhCCCC
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI---LYAARAGVYVKL--------NKPNAAIRDAYVALETNPDS 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~ 118 (227)
...+++.+|..++..|++++|+..|++++..+|+++. +++.+|.+++.. |++++|+..|++++..+|++
T Consensus 69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 3468899999999999999999999999999998765 799999999986 78999999999999999998
Q ss_pred HHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhhhhHHHHHHHHHH
Q 041967 119 AKGY-----------------KIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKKVEPNARRIQEHRRKYER 177 (227)
Q Consensus 119 ~~~~-----------------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (227)
..++ +.+|.++...|++.+|+..|.+++...|+. .++..++.++...|++.++...++.
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 467889999999999999999999998863 4677999999999999999998877
Q ss_pred HHHH
Q 041967 178 LRKE 181 (227)
Q Consensus 178 ~~~~ 181 (227)
+.+.
T Consensus 229 l~~~ 232 (235)
T TIGR03302 229 LGAN 232 (235)
T ss_pred HHhh
Confidence 6543
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.40 E-value=1.8e-11 Score=99.66 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
+...+.++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|.-..|+.++.++|++.|++..+.+.+|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
++..+|+++.|...|.+++..+|.+
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999975
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.39 E-value=3.1e-11 Score=103.03 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-KGYKIRGMARARL 132 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 132 (227)
+..+|..++..|++++|+..|.+++..+|++..+++.+|.++...|++++|+..+++++..+|.+. .++..++.+|...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 444555555566666666666666665555555555566666666666666666666665555542 3445555566666
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 133 GQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
|++++|+..+++++...|+......++.++...|++.+|...+++..+..
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 66666666666666655555444555555555566666666555554443
No 48
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.39 E-value=2.6e-11 Score=92.33 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..+..++..|..+...|++++|+.+|.+++...|+. +.++.++|.++...|++++|+..+.+++...|.+..++..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 467889999999999999999999999999887763 46899999999999999999999999999999999999999
Q ss_pred HHHHHHcCC--------------HHHHHHHHHHHHhcCCCh
Q 041967 126 GMARARLGQ--------------WEEAANDLHVASKLDYDE 152 (227)
Q Consensus 126 a~~~~~~g~--------------~~~A~~~~~~a~~~~p~~ 152 (227)
|.++..+|+ +..|...+++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999998 567777777777777776
No 49
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.38 E-value=2.6e-12 Score=82.68 Aligned_cols=67 Identities=31% Similarity=0.410 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG-QWEEAANDLHVASKLDY 150 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p 150 (227)
++..|..+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+| ++.+|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57889999999999999999999999999999999999999999999999 79999999999999998
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=3e-12 Score=109.85 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.++.+..+|..|.-.|+|+.|+.+|+.||..+|++...|..+|..+....+..+||..|++|+.+.|.+.+++|++|.++
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC
Q 041967 130 ARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
..+|.|++|+.+|..|+.+.+.
T Consensus 509 mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999775
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.38 E-value=1.8e-11 Score=113.50 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
...+..+...|..++..|++++|+..|.+++..+|++..+++.+|.+++..|++++|+..+++++..+|.+..+++.+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
++...|+++.|...|++++..+|.+ ..+..++.+....|++.+|...+..+.+..
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 257 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA 257 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988 667788888888899998888887776543
No 52
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.37 E-value=2e-11 Score=113.23 Aligned_cols=132 Identities=17% Similarity=0.097 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
..+...|..+...|++++|+..+.+++..+|++..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 56677888888889999999999998888888888888899999888999999999999998889888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.|+ .+|+..+++++.+.|++ ..+..++.++...|++.+|...++++.+..+.
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888 77899999998888888 66778888888888888888888888876554
No 53
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=4.7e-11 Score=88.01 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=98.8
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHH
Q 041967 78 IMLN-PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIG 155 (227)
Q Consensus 78 l~~~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~ 155 (227)
..+. ++.....|.+|..++..|+++.|...|+.++.++|.+...|++||.|+..+|++.+|+..|.++..++|++ ...
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 4566 77788999999999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 156 MALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
.+++.++...|+...|+..|+......
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999999999998887666
No 54
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.8e-11 Score=97.95 Aligned_cols=104 Identities=24% Similarity=0.307 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
..++.+...|+.+|+.++|..|+..|.++|+.... ++..|.|+|.|.+.+|+|..|+.+|.+++.++|++.+++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 37889999999999999999999999999997544 46689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
-|.|+..+..+..|..+++..+.++-..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999999999999888666
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.37 E-value=4.6e-11 Score=107.07 Aligned_cols=134 Identities=18% Similarity=0.170 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....++..|+.++..|++++|...+.++|+++|.++.+|+.+|.+|-++|+.+++....-.|-.++|.+.+.|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..+|.+..|.-+|.+|++.+|.+ ........++.+.|+...|...+.++....+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999 6667778888999999999999988876655
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.2e-12 Score=103.29 Aligned_cols=107 Identities=31% Similarity=0.414 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
...+.+...|+..+++|.|..|.++|..+|.++|++ +..|.++|.+..++|+..+|+.+|+.++.++|...+++..
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence 456788999999999999999999999999999985 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDEEIG 155 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 155 (227)
.|.|+..+++++.|++.|++|++...+....
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r 357 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKDCEIR 357 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999999999999999999999998774333
No 57
>PLN02789 farnesyltranstransferase
Probab=99.36 E-value=1.3e-10 Score=96.72 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=99.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW-- 135 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-- 135 (227)
.++...+.++.|+..+.++|.++|.+..+|..+|.++..+| .+++++..+++++..+|++..+|+.++.++..+|..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 34556678888888888888888888888888888888887 578888888888888888888888888888878763
Q ss_pred HHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 136 EEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 136 ~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..++..+.+++.++|.| .+|...+.+....|.+.++...+.++.+.++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 66788888888888888 7788888888888888888888877765433
No 58
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.36 E-value=7.1e-11 Score=89.53 Aligned_cols=104 Identities=19% Similarity=0.134 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..+..++..|..+...|+|++|+..|.+++.+.|+ .+.+++++|.++...|++++|+..|++++.++|.+...+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 46788999999999999999999999999998766 346899999999999999999999999999999999999999
Q ss_pred HHHHH-------HcCCHH-------HHHHHHHHHHhcCCCh
Q 041967 126 GMARA-------RLGQWE-------EAANDLHVASKLDYDE 152 (227)
Q Consensus 126 a~~~~-------~~g~~~-------~A~~~~~~a~~~~p~~ 152 (227)
|.++. .+|++. +|+..|++++..+|.+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99998 777766 5666666777888865
No 59
>PRK15331 chaperone protein SicA; Provisional
Probab=99.35 E-value=3.2e-11 Score=89.30 Aligned_cols=104 Identities=12% Similarity=0.054 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
.+..+..+..|..++..|++++|...|.-....+|.++++|..+|.|+...++|++|+..|..+..++++++...|..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
|+..+|+...|..+|..++. .|.+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999988 3544
No 60
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=9.1e-12 Score=96.59 Aligned_cols=118 Identities=25% Similarity=0.293 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+..+...|+.+|....|..|+.+|.++|.++|..+.+|.+++.||++.++++.+..++.+++.+.|+..++++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhc------CCChHHHHHHHHHHHhhh
Q 041967 129 RARLGQWEEAANDLHVASKL------DYDEEIGMALKKVEPNAR 166 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~l~~~~~~~~ 166 (227)
+.....|..|+..+++++.+ .+.++++..|.......-
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w 131 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRW 131 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCcc
Confidence 99999999999999999655 334467776666654433
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.2e-11 Score=104.59 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------------------------------
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----------------------------------------- 85 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------- 85 (227)
++..+++|..+|.+...+++=..||..+.++++++|++.
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 446778888888888888888888888888887777763
Q ss_pred ------------------------------------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 86 ------------------------------------ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 86 ------------------------------------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
++...+|.+|...|+|++|+.+|+.||..+|.+...|.+||-++
T Consensus 395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 34444555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
..-.+..+|+..|.+|+++.|.. .++.+++..+.++|-+++|...+
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 55555555555555555555555 55555555555555555555555
No 62
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.34 E-value=4.1e-11 Score=115.40 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=111.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH--------------H
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK--------------G 121 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~ 121 (227)
..|..++..|++++|+..|++++..+|+++.++..+|.+++..|++++|+..|++++..+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999987643 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 122 YKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 122 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
....|.++...|++++|+..|++++.++|.+ .++..++.++...|++.+|...|+++.+..+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 2345778889999999999999999999988 66778899999999999999999888766553
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.34 E-value=3.7e-12 Score=85.32 Aligned_cols=81 Identities=26% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 041967 64 EGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAND 141 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 141 (227)
+|+|+.|+.+|++++...|+ +..+++.+|.|+++.|++.+|+..+++ +..+|.+...++.+|.|+..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 889999999999999999999999999999
Q ss_pred HHHH
Q 041967 142 LHVA 145 (227)
Q Consensus 142 ~~~a 145 (227)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.33 E-value=9.7e-11 Score=99.96 Aligned_cols=128 Identities=17% Similarity=0.062 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
.+..++..+...|++++|+..|.+++...|.. ..++..+|.++...|++++|+..|++++..+|+...+++.+|.
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 33444444444444444444444444443332 1133344444444555555555555555555544445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE--EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
++...|++++|+..|.+++..+|.+ ..+..++.++...|+++++...++++..
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555444443 1233444444444555555554444443
No 65
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.33 E-value=8.2e-11 Score=113.35 Aligned_cols=130 Identities=17% Similarity=0.113 Sum_probs=114.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH------
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM------ 127 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------ 127 (227)
+...|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|.+..++..++.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999998876655544
Q ss_pred ------------------------------------HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHH
Q 041967 128 ------------------------------------ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQE 170 (227)
Q Consensus 128 ------------------------------------~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~ 170 (227)
++...|++++|+..|+++++++|++ .+...++.++...|++.+
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3456799999999999999999998 667789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 041967 171 HRRKYERLRKERE 183 (227)
Q Consensus 171 a~~~~~~~~~~~~ 183 (227)
|...++++.+..+
T Consensus 514 A~~~l~~al~~~P 526 (1157)
T PRK11447 514 ADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHcCC
Confidence 9999988876544
No 66
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=4e-11 Score=98.22 Aligned_cols=130 Identities=22% Similarity=0.177 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..|+..|..+.+.|++++|+..|+++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 45677888888888888888888888888888888888888888888888888888888888888788888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
..+|++++|+.+|+++++.+|+| .+...++.++...|+.++|...+.++.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888888888888888888888 556688888888888888887776554
No 67
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.31 E-value=1.6e-10 Score=93.53 Aligned_cols=104 Identities=17% Similarity=0.057 Sum_probs=94.7
Q ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHH
Q 041967 51 ANMTKLKAVDL-ISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYK 123 (227)
Q Consensus 51 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 123 (227)
....+..|..+ +..|+|++|+..|+..+..+|++ +.+++.+|.+|+..|++++|+..|..++..+|++ +.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46667777776 67899999999999999999997 5799999999999999999999999999998885 67999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
.+|.++..+|+++.|...|+++++..|+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999998743
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.31 E-value=1.3e-10 Score=107.58 Aligned_cols=128 Identities=13% Similarity=0.039 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..+...|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++.. ++.+|.++
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l 126 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVY 126 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
...|++.+|+..|++++.+.|++ .+...++.++...+..+.|...+++.
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999999999999999999 66677788887778877777766643
No 69
>PLN02789 farnesyltranstransferase
Probab=99.30 E-value=1.7e-10 Score=95.89 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHhCCCCHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEG-KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKP--NAAIRDAYVALETNPDSAKGYK 123 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~ 123 (227)
.+....+|..+|.++...| ++++++..+.+++..+|++..+|..++.++...|.. .+++..+.+++..+|.|..+|.
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence 3456778999999999998 689999999999999999999999999999999874 7889999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA 165 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~ 165 (227)
.++.++..+|.+++|+.++.++++.+|.| .+|...+.+..+.
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999 8888877776554
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.29 E-value=1.8e-11 Score=77.81 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=43.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA 119 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 119 (227)
..|..++..|+|++|+..|++++..+|+++.+++.+|.+++..|++++|+..|++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566667777777777777777777777777777777777777777777777777777766654
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.27 E-value=5.2e-11 Score=107.50 Aligned_cols=139 Identities=18% Similarity=0.145 Sum_probs=122.7
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH----
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK---- 120 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---- 120 (227)
..+.++-.+..+|...|..|+|..|+.+|++++.++|.. +.....+|.|+.++|..+.|+..|++++.++|++..
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 344567889999999999999999999999999999986 457788899999999999999999999999887543
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Q 041967 121 ----------------------------------------------------------------------GYKIRGMARA 130 (227)
Q Consensus 121 ----------------------------------------------------------------------~~~~la~~~~ 130 (227)
.+|++|.+|.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-H-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-E-IGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.+|+|+.|..+|..+++.+|++ . ....++.++...|+++.+..+|++..+..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999998 3 3458999999999999999999999887765
No 72
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=7.1e-10 Score=93.99 Aligned_cols=130 Identities=17% Similarity=0.061 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....+|..+..++..|+++.|+..++..+...|++++++...+.+++..++..+|++.+++++.++|..+..++++|.+|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
...|++.+|+..+...+..+|++ ..|..|+..+...|+..++...+....
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999 889999999999999888887774444
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.21 E-value=6.9e-11 Score=75.06 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 89 AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 89 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+.+|..++..|++++|+..|++++..+|.++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999999999999999999999999999999999986
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=2.1e-09 Score=87.05 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.++..+...|-...+|++||....+..++.|.. +.+|+.++..+....++++|+..+.+|+..+|++..+-+.+|
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 355566677777788888888888877777764 567888888888889999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE--EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.++...|+|..|++.++.+++.+|+- .+...|..++..+|+..+....+.+......+
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999986 66778899999999999988888777766554
No 75
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.7e-10 Score=89.80 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCCHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETNPDSAKGYK 123 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~ 123 (227)
++.+++.|..+|.+|+..|++..|..-|.+|+.+.|+++.++..+|.+++... ...++...+++++.++|.+..+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 34568899999999999999999999999999999999999999999998874 367899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYDEEIGM 156 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 156 (227)
.+|..++..|+|.+|+..++..+...|.+..+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999999999999999884444
No 76
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.1e-10 Score=90.96 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN 164 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~ 164 (227)
.-+-+-|.-+++.++|++|+..|.+||.++|.++..|.++|.+|.++|.++.|++.++.++.++|.. ..|..|+..+..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 4466678888999999999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHH
Q 041967 165 ARRIQEHRRKYERLRKERELKNF 187 (227)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~ 187 (227)
+|++.+|...|++....++..+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHH
Confidence 99999999999999877775443
No 77
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=1.1e-10 Score=102.79 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.++.+.+..|...+.+++|.++..+++.+++++|-....|+++|.|..+.++++.|..+|.+++.++|++..+|.+++.+
T Consensus 483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 45667778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
|...++-.+|...+..|++.+-.+ .+|.+.--+....|+++++...|.++.....
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 999999999999999999999888 8999999999999999999999987765544
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.18 E-value=4.7e-09 Score=77.58 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGY 122 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 122 (227)
..+...+......+..+++..+...++..+..+|++ ..+.+.+|.+++..|++++|+..|+.++...|+. +.+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 356677788888888999999999999999999998 5678889999999999999999999999988665 4588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
+++|.++...|++++|+..+.....-..........+.++...|++.+|+..|++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 89999999999999999999763222212255678999999999999999999764
No 79
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.16 E-value=1.6e-09 Score=86.30 Aligned_cols=105 Identities=20% Similarity=0.128 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKI 124 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 124 (227)
+...|..+..+++.|+|..|...|..-++.+|++ +.++|.+|.+++.+|+++.|...|..+++-.|++ +++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3449999999999999999999999999999985 6799999999999999999999999999999877 578999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDEEIG 155 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 155 (227)
+|.+..++|+.+.|...|+++.+..|+.+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999997443
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.16 E-value=1.2e-09 Score=99.11 Aligned_cols=106 Identities=14% Similarity=0.045 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.++...++...+.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|+..|++++..+|++..++..+|
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a 195 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA 195 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.++...|+.++|...|++++....+-
T Consensus 196 ~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 196 QSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999987653
No 81
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.15 E-value=1.7e-10 Score=73.79 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=53.9
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
++..|+|++|+..|++++..+|++..+++.+|.||+..|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3567888888888888888888888888888888888888888888888888888888777766654
No 82
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.14 E-value=2.3e-09 Score=84.47 Aligned_cols=129 Identities=17% Similarity=0.165 Sum_probs=118.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 134 (227)
...+..+...|+-+.+..+..++...+|.+.......|..+...|+|..|+..++++..+.|+++++|..+|.+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 66788888899999999999998888999988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 135 WEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 135 ~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
++.|...|.+++++.|.+ .+..+++..+.-.|+.+.|...+....-...
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999998 6777999999999999999998877664443
No 83
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=6.9e-09 Score=81.12 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYK 123 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 123 (227)
.+..++..|..++..|+|.+|+..|++.+...|.+ +.+.+.+|.+++..|++..|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 57899999999999999999999999999998875 57899999999999999999999999999999875 5899
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCChH-H---H--------------HHHHHHHHhhhhHHHHHHH
Q 041967 124 IRGMARARLG-----------QWEEAANDLHVASKLDYDEE-I---G--------------MALKKVEPNARRIQEHRRK 174 (227)
Q Consensus 124 ~la~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~-~---~--------------~~l~~~~~~~~~~~~a~~~ 174 (227)
.+|.++..+. ...+|+..|+..+...|+.. + . ..++..+.+.|.+..|...
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999976653 34589999999999999851 1 1 1334445566666666666
Q ss_pred HHHHHHHHHh
Q 041967 175 YERLRKEREL 184 (227)
Q Consensus 175 ~~~~~~~~~~ 184 (227)
++.+++.-+.
T Consensus 164 ~~~v~~~yp~ 173 (203)
T PF13525_consen 164 FQYVIENYPD 173 (203)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHHCCC
Confidence 6666655444
No 84
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.14 E-value=2e-09 Score=78.12 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYK 123 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 123 (227)
.+..++..|...+..|+|.+|++.|+......|.. ..+...+|.+|++.+++..|+..+++-|+++|.++ -+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46889999999999999999999999999988874 56899999999999999999999999999999986 4899
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCh
Q 041967 124 IRGMARARLGQ---------------WEEAANDLHVASKLDYDE 152 (227)
Q Consensus 124 ~la~~~~~~g~---------------~~~A~~~~~~a~~~~p~~ 152 (227)
..|.++..+.. ...|...|+.+++..|+.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 99999998876 667777777777777765
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=1.6e-09 Score=100.14 Aligned_cols=135 Identities=12% Similarity=0.019 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+...+..+...+++|++..|+..|.++++.+|.++.+...+..++...|+.++|+.++++++.-.|.....+..+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45677888888888888888888888888888887544446777777777777777777777722233333334446677
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
...|+++.|+..|+++++.+|++ .+...+...+...++..+|...++++.+..+.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 77777777777777777777777 55556666666777777777777776655554
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=1.7e-09 Score=95.90 Aligned_cols=134 Identities=22% Similarity=0.125 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...|...+..+...+.-++|..++.++-.++|.+++.|+.+|.++...|++.+|.+.|..++.++|+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 46778888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 131 RLGQWEEAAN--DLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 131 ~~g~~~~A~~--~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
..|+..-|.. .+..+++++|.+ ++|..++.+....|+..+|..+|..+....+.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9999888888 999999999999 99999999999999999999999888766554
No 87
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.13 E-value=9.4e-09 Score=82.47 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAIL---YAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYK 123 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 123 (227)
.+..++..|..++..|+|++|+..|++++...|.++.+ .+.+|.+|++.+++..|+..+++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 46779999999999999999999999999999998655 48999999999999999999999999999885 5899
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCh
Q 041967 124 IRGMARARLG---------------Q---WEEAANDLHVASKLDYDE 152 (227)
Q Consensus 124 ~la~~~~~~g---------------~---~~~A~~~~~~a~~~~p~~ 152 (227)
.+|.++..++ + ...|+..|+..+...|+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 9999875554 1 356889999999999985
No 88
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.13 E-value=4e-09 Score=91.07 Aligned_cols=131 Identities=12% Similarity=-0.021 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH--HHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILY--AARAGVYVKLNKPNAAIRDAYVALETNPDSA--KGYKI 124 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 124 (227)
.....+...|..+...|++++|+..+.++++..|++.... ..+....+..++...++..++++++.+|+++ ..+..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4678899999999999999999999999999999987531 2233444456888999999999999999999 88889
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 125 RGMARARLGQWEEAANDLH--VASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~--~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
+|.++...|++++|.++|+ .++...|++.....++.++...|+..+|...|++..
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999 688899999777799999999999999999887654
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=7.5e-10 Score=98.06 Aligned_cols=105 Identities=24% Similarity=0.293 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHhCCCCHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIR--DAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~ 127 (227)
.+..|+..|..+..+|++.+|...|..|+.++|++..+...+|.++...|+..-|.. .+..+++++|.++++|+.+|.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999998887777 999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
++...|+.++|..+|+.|+++++.+++
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999988754
No 90
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=4.7e-09 Score=85.07 Aligned_cols=138 Identities=15% Similarity=0.097 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-HHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-KGYKIRGM 127 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~ 127 (227)
..+..+.+++..+....+.+.|+..+.+|+..+|++..+-..+|.++...|+|++|+..++.+++.||... .+.-.+..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999985 78889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKN 186 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (227)
||..+|+..+....+.++.+..++.++...+..+.........|...+.+..+..+...
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 99999999999999999999999987777777777777778888888877776666543
No 91
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.12 E-value=4.6e-09 Score=97.38 Aligned_cols=132 Identities=18% Similarity=0.032 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 132 (227)
....-..+..-.|++++|+..+.+++..+|..+.++..+|.++...|++.+|+..|++++.++|.++.+++.+|.++...
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 33444566778899999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967 133 GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELK 185 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (227)
|++++|+..+++++...|++ . +..++.++...|+..+|...++++.+..+..
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999 6 7789999999999999999999998877653
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=2.1e-09 Score=87.83 Aligned_cols=136 Identities=20% Similarity=0.165 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---------
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--------- 118 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------- 118 (227)
+++..++|.+|.+|+..|+-..|+..+.++|.+.|+...+...+|.+++++|+++.|..+|..+|..+|.+
T Consensus 69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqsk 148 (504)
T KOG0624|consen 69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSK 148 (504)
T ss_pred chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888877743
Q ss_pred ----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967 119 ----------------------------------------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA 157 (227)
Q Consensus 119 ----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~ 157 (227)
...+..++.||...|+...|+..+..+-++..++ +....
T Consensus 149 l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 149 LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 2256667889999999999999999999988887 66778
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 158 LKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
++.++...|+.+.+...++.+.+.++
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 88888888888888888777776655
No 93
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.5e-09 Score=83.64 Aligned_cols=104 Identities=22% Similarity=0.234 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM--------LNPTS----------AILYAARAGVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--------~~p~~----------~~~~~~~g~~~~~~~~~~~A~~~~~~ 110 (227)
.....+...|+.+|+.|+|.+|...|..|+. -.|.+ ...+.|++.|++..|+|-+++..+..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 3467899999999999999999999999983 24443 45788999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
++..+|.|.++||.+|.++...=+..+|...|.+++.++|.-
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999999975
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7.9e-10 Score=91.97 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------------AILYAARAGVYVKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 115 (227)
....++++..|.+++-..+.+.|+..|+++|.++|+. ...+-..|.-.++.|++..|-+.|..+|.++
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 3568899999999999999999999999999999985 3467788999999999999999999999999
Q ss_pred CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 116 PDSA----KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 116 p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|.+. ..|.++|.+..++|...+|+..+..++.++|.- ......+.++..+++|+++.+.++++.+....
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9874 689999999999999999999999999999887 66778889999999999999999888766543
No 95
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.11 E-value=1.7e-10 Score=97.75 Aligned_cols=113 Identities=28% Similarity=0.394 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..+...++..+..+.|+.|+..|.+||+++|+++.++.+++.++.+.++|..|+.++.++|+++|...++|++.|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE 162 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~ 162 (227)
..++++.+|...|++...+.|++ .+...+.++.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 99999999999999999999998 4444444443
No 96
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.11 E-value=6.8e-10 Score=72.05 Aligned_cols=70 Identities=27% Similarity=0.405 Sum_probs=55.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
...++..++|++|+.++++++..+|+++..++.+|.+++..|++.+|+.+|+++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3567788888888888888888888888888888888888888888888888888888887776655443
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.10 E-value=2.2e-09 Score=71.34 Aligned_cols=94 Identities=28% Similarity=0.301 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967 87 LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA 165 (227)
Q Consensus 87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~ 165 (227)
+++++|.+++..|++++|+..+++++...|.+..+++.+|.++...|+++.|+..|.+++...|.+ ..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999998 6778888999999
Q ss_pred hhHHHHHHHHHHHHH
Q 041967 166 RRIQEHRRKYERLRK 180 (227)
Q Consensus 166 ~~~~~a~~~~~~~~~ 180 (227)
|++..+...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999988888776653
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1e-08 Score=80.51 Aligned_cols=133 Identities=20% Similarity=0.156 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
.......|..+-..|.|++|+++|+..+.-+|++..++-..-.+...+|..-.||+.+...+...+.+.++|..++.+|.
T Consensus 86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45566778888889999999999999999999988888888778888899999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR---IQEHRRKYERLRKERE 183 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~ 183 (227)
..|+|+.|.-+|+.++-+.|.+ .....++.+....|. ..-++..|.+.++..+
T Consensus 166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999998 445677777765554 3445556666665555
No 99
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=4.4e-10 Score=94.72 Aligned_cols=135 Identities=13% Similarity=-0.073 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.++.++.+.|+..|.+|++++|...|.++|.-+..+..+++++|..+-.+|+.++|+.+|-+.-.+--++..+++.++.+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999987766666789999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
|..+.+..+|+++|.++..+-|++ .+...|+.++.+-|+-.++.+++-...+..+
T Consensus 568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp 623 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP 623 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC
Confidence 999999999999999999999999 6677999999999988888777655544444
No 100
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.08 E-value=4e-09 Score=79.90 Aligned_cols=121 Identities=10% Similarity=-0.006 Sum_probs=96.2
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTS--AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLG 133 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g 133 (227)
+.+|-...|..+...+...+..++.. ..+++++|.++...|++++|+..|++++.+.|+. +.+|+++|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 34555566777777776665666554 6688999999999999999999999999997763 458999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH-------hhhhHHHHHHHHHHHH
Q 041967 134 QWEEAANDLHVASKLDYDE-EIGMALKKVEP-------NARRIQEHRRKYERLR 179 (227)
Q Consensus 134 ~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~-------~~~~~~~a~~~~~~~~ 179 (227)
++++|+..|.+++.+.|.. ..+..++.++. ..|++..+...+.+..
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999997 66667777777 5555555555554443
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.07 E-value=3.4e-09 Score=89.77 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR 166 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~ 166 (227)
+...|..++..|+|..|+..|++++.++|++..+|+.+|.++..+|++++|+..+.+++.++|.+ ..+..++.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678999999999999999999999999999999999999999999999999999999999998 77889999999999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 041967 167 RIQEHRRKYERLRKEREL 184 (227)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~ 184 (227)
++.+|...++++.+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999877665
No 102
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.5e-09 Score=89.99 Aligned_cols=130 Identities=13% Similarity=0.085 Sum_probs=97.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-------PDSAKGYKIRGM 127 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~ 127 (227)
.-+|..+...+++.-|..+|.+|+.+.|.++-.+..+|.+.+..+.|.+|..+|+.++..- +.+...+.++|.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 3466666666777777777777777777777777777777777777777777777766221 124456788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++.+++.+.+|+.+|++++.+.|.+ .....++-++...|++..|...|.+.....+.
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 8888888888888888888888888 67778888888888888888888777666554
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.06 E-value=6.3e-09 Score=73.49 Aligned_cols=100 Identities=16% Similarity=0.079 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMA 157 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~ 157 (227)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|+++.|+..|+.++..+|++ .++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999887 5789999999999999999999999999999884 45778
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 158 LKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++.++...+++.++...+..+....+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 899999999999999999888777654
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=5.3e-09 Score=88.79 Aligned_cols=104 Identities=28% Similarity=0.319 Sum_probs=96.0
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..++++..+-..+.+++..++..+|++.+++++.++|+.+..+.++|.++++.|++.+|+..++..+..+|+++..|..+
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L 414 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL 414 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH
Confidence 34456777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 126 GMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
|.+|..+|+..+|...+-..+.+.
T Consensus 415 Aqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 415 AQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHhCchHHHHHHHHHHHHhC
Confidence 999999999999988877666554
No 105
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.04 E-value=1.8e-08 Score=71.55 Aligned_cols=104 Identities=28% Similarity=0.359 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----HHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----KGYKI 124 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~ 124 (227)
.....+-..|..+...|+.+.|++.|.++|.+.|..+.+|.|++..+..+|+.++|+.++++++++-.... .++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999975543 48889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+|.+|..+|+-+.|...|..+.++....
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999999887553
No 106
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.04 E-value=1.6e-08 Score=87.07 Aligned_cols=132 Identities=15% Similarity=0.086 Sum_probs=116.4
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..++.+......+..+...|+.++|...+.++++. |.++.....++.+ ..+++.+++..++..++.+|+++..++.+
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34456788899999999999999999999999995 4456655445544 45999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
|.++...+++.+|..+|++++...|++.....++.++...|+..++...|++...
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888999999999999999998876643
No 107
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.1e-08 Score=92.83 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
++.+|..|..+..+|+|++|..+|.+++..+|++ .-+++.+|..|.+.|+++.++.+|+++++.+|++.+....+|.+|
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 4456666666666666666666666666666555 445556666666666666666666666666666666666666666
Q ss_pred HHcC----CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967 130 ARLG----QWEEAANDLHVASKLDYDE-EIGMALKKVEPN 164 (227)
Q Consensus 130 ~~~g----~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~ 164 (227)
...+ ..+.|...+.+++...|.+ ..|..++.++..
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 5554 3445555666666666555 555555444443
No 108
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.01 E-value=1.9e-08 Score=71.65 Aligned_cols=96 Identities=24% Similarity=0.081 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---CHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPD---SAKGYKIR 125 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 125 (227)
.++|+.|..+-..|+.++|+.+|.+++...... ..++..+|.++..+|++++|+..++.++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999975544 568999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 041967 126 GMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~ 147 (227)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 109
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=7.2e-10 Score=89.96 Aligned_cols=121 Identities=16% Similarity=0.132 Sum_probs=60.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCC
Q 041967 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP---DSAKGYKIRGMARARLGQ 134 (227)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~ 134 (227)
|..||-.++.+-|+.+|.+.|.+.-.++..+.|+|.|.+.-++++-++..|++++..-. .-.++||++|.+....|+
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 33334444444444444444444444455555555555555555555555555554321 123455555555555555
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 135 WEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 135 ~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
+.-|.++|+-++..+|++ ++..+|+.+..+.|++.+|+..+..+
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 555555555555555555 44445555555555555555544433
No 110
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.99 E-value=8.3e-08 Score=82.89 Aligned_cols=132 Identities=11% Similarity=-0.022 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-KGYKIRGMA 128 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 128 (227)
.+......|...+..|+|+.|.+.+.++.+..|....++...|.++...|+++.|..++.++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 4667788999999999999999999999999998888888899999999999999999999999999986 566667999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
+...|+++.|...++...+..|++ .+...++.++...|++.++...+..+.+.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999999999999 77889999999999999999988888765
No 111
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.99 E-value=3.3e-08 Score=89.13 Aligned_cols=103 Identities=19% Similarity=0.098 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+.+|+.+|.++-.+|+.++++.....|-.++|.+...|..++....++|++.+|+-+|.+||+.+|.+.+.++.++.+
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L 250 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL 250 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 041967 129 RARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
|.++|++..|+..|.+++.+.|.
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999994
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.98 E-value=1.7e-08 Score=93.00 Aligned_cols=134 Identities=11% Similarity=-0.068 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH--------
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-------- 119 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------- 119 (227)
+....++..+...+...+++++|+..+..++..+|+...+|+.+|.++++.+++..+... .++...+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 356889999999999999999999999999999999999999999999999988776665 5555555554
Q ss_pred -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 120 -----------KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 120 -----------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.+++.+|.||..+|++++|...|+++++++|+| .+..+++-.+... +.++|...+.+++...-.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999 7777888888777 999999999888766443
No 113
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.98 E-value=1.9e-08 Score=76.49 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967 82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA 157 (227)
Q Consensus 82 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~ 157 (227)
+..+.+++++|.++...|++++|+.+|++++...|+. ..+++.+|.++...|+++.|+..|.+++.+.|.+ ..+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4467789999999999999999999999999987764 4689999999999999999999999999999998 66778
Q ss_pred HHHHHHhhhhHHHHHHHHHHH
Q 041967 158 LKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~ 178 (227)
++.++...|+...+...+...
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH
Confidence 888888877765555554443
No 114
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.98 E-value=1.3e-08 Score=94.16 Aligned_cols=131 Identities=12% Similarity=-0.040 Sum_probs=109.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 135 (227)
.....+...|++++|+.++++++...|.....+..+|.++...|++++|+..|+++++.+|+++.+++.++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 66777788899999999999999444555555555588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967 136 EEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKN 186 (227)
Q Consensus 136 ~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (227)
++|+..+.++...+|.+.....+..+....++..++...++++....+...
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999974445556666556777679999999888877643
No 115
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.98 E-value=2.9e-08 Score=87.67 Aligned_cols=136 Identities=18% Similarity=0.050 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHh--CC
Q 041967 50 AANMTKLKAVDLISEGK---LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK--------PNAAIRDAYVALET--NP 116 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~--~p 116 (227)
.+-.++.+|..++..++ +..|+.+|++|++++|+++.++..++.+|..... ...+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45678889988888766 8899999999999999999999999988866422 34556666666664 77
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELK 185 (227)
Q Consensus 117 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (227)
..+.+|..+|..+...|++++|...|++++.++|+...+..++.++...|+.++|...|.++....+..
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 888999999999999999999999999999999966778899999999999999999999988777763
No 116
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.3e-08 Score=79.69 Aligned_cols=119 Identities=18% Similarity=0.053 Sum_probs=108.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 041967 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ---WEEAANDL 142 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 142 (227)
+.+..+.-++.-+..+|+++.-|..+|.+|+.+|++..|...|.+++++.|+++..+..+|.++....+ ..++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 467778888889999999999999999999999999999999999999999999999999999876653 45799999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 143 HVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 143 ~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.+++.++|+| .+...|+......|++.+|...++.+.+..+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999 77889999999999999999999999877553
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.97 E-value=1.3e-08 Score=75.17 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
...+.+.+|..++..|+|++|+..|+.++...|+. +.+.+.+|.+++..|++++|+..++. +.-.+-.+.++..+|
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence 35778899999999999999999999999987664 45788999999999999999999966 344455567888899
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~ 146 (227)
.++...|++++|+..|++++
T Consensus 126 di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999999874
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=1.8e-08 Score=88.03 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
..+|..+...+..++|...+...+..|+..|..++.+...|..+..+|+-++|......+++.++.....|..+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 46777778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
..+|++|+++|..|+.++|+| .++.-++-+..+.+++........++....+.
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 888888888888888888888 77777777777777776665555555544443
No 119
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.9e-09 Score=89.03 Aligned_cols=132 Identities=15% Similarity=0.078 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
|..+-.|+..|..|+..|.+.+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++-|....-.+.+|.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
=|.+++.++-|.+.|.+|+.+.|.+ -+...++-+....+.+.+|...|+...
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 9999999999999999999999999 556789999999999999999997766
No 120
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=4.2e-08 Score=82.77 Aligned_cols=131 Identities=15% Similarity=0.033 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------------------------------------HHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAIL-------------------------------------YAARAG 93 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------------------~~~~g~ 93 (227)
.+.....|..++..|++++|+..+.+++..+|.+..+ +..+|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 4556677888888888888888888888777766433 335566
Q ss_pred HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H----HHHHHHHHHHhhhhH
Q 041967 94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E----IGMALKKVEPNARRI 168 (227)
Q Consensus 94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~----~~~~l~~~~~~~~~~ 168 (227)
++...|++++|+..+++++.++|+++.++..+|.++...|++++|+.++.+++...|.+ . .+..++.++...|++
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 77778888888888888888888888888888888888888888888888888877643 1 233677777888888
Q ss_pred HHHHHHHHHHHHH
Q 041967 169 QEHRRKYERLRKE 181 (227)
Q Consensus 169 ~~a~~~~~~~~~~ 181 (227)
.++...+++....
T Consensus 203 ~~A~~~~~~~~~~ 215 (355)
T cd05804 203 EAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888776544
No 121
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.93 E-value=5.8e-09 Score=66.62 Aligned_cols=65 Identities=28% Similarity=0.271 Sum_probs=57.7
Q ss_pred HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967 95 YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALK 159 (227)
Q Consensus 95 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~ 159 (227)
++..|++++|+..|++++..+|++..+++.+|.||...|++++|...+.+++..+|++ ..+..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999999999999999997 4444443
No 122
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.92 E-value=8.7e-09 Score=66.76 Aligned_cols=64 Identities=28% Similarity=0.357 Sum_probs=60.2
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 041967 92 AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIG 155 (227)
Q Consensus 92 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 155 (227)
...|...+++++|+.++++++.++|+++..|+.+|.++..+|++.+|+..|+++++..|++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4678899999999999999999999999999999999999999999999999999999988443
No 123
>PRK11906 transcriptional regulator; Provisional
Probab=98.92 E-value=7.5e-08 Score=82.12 Aligned_cols=134 Identities=13% Similarity=0.004 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHhCCC
Q 041967 53 MTKLKAVDLISEGK---LEDAIGQLTEAI---MLNPTSAILYAARAGVYVKL---------NKPNAAIRDAYVALETNPD 117 (227)
Q Consensus 53 ~~~~~g~~~~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~ 117 (227)
.++..|...+..+. ...|+.+|.+++ .++|..+.+|..++.|++.. ....+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 45777777777764 467888999999 89999999999999998775 1245688888999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN 186 (227)
Q Consensus 118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (227)
++.+++.+|.++...++++.|...|++|+.++|+. ..+...+.+..-.|+.+++...+++..+..+.+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999999999999999998 7788889999999999999999998887777643
No 124
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.91 E-value=2.5e-07 Score=79.60 Aligned_cols=134 Identities=10% Similarity=-0.050 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCcHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAAR-AGVYVKLNKPNAAIRDAYVALETNPDSAK-GYKIRG 126 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la 126 (227)
..+...+..|...+..|+|++|.+...++-...+ .+..++.+ +.+..+.|+++.|..++.++.+.+|++.. .....+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3567788999999999999999988887665443 34544444 66669999999999999999999999864 445569
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.++...|+++.|...+++..+.+|++ .+...+..++...|+|.++...+..+.+...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999 7788999999999999999988877776543
No 125
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.91 E-value=8.9e-09 Score=87.57 Aligned_cols=69 Identities=23% Similarity=0.237 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI---LYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
..++.+..++++|..++..|+|++|+..|+++|.++|++.. +|+|+|.||..+|++++|+.++++++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999999999999885 4999999999999999999999999997
No 126
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=3.2e-08 Score=76.29 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++++|..|=..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+|+.|...|+.+++++|.+.-++.++|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChH---HHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDEE---IGMALKKV 161 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~~---~~~~l~~~ 161 (227)
..-|.+.-|...+.+..+-+|.++ .|..+.+.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~ 178 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ 178 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999973 35544443
No 127
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.88 E-value=7.8e-09 Score=69.06 Aligned_cols=79 Identities=22% Similarity=0.187 Sum_probs=69.6
Q ss_pred cCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHH
Q 041967 98 LNKPNAAIRDAYVALETNPD--SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRK 174 (227)
Q Consensus 98 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~ 174 (227)
.|+++.|+..+++++..+|. +...++.+|.|++.+|++++|+..+++ ...+|.+ .....++.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999996 466788899999999999999999999 8888887 7777889999999999999998
Q ss_pred HHH
Q 041967 175 YER 177 (227)
Q Consensus 175 ~~~ 177 (227)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 865
No 128
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.2e-08 Score=80.32 Aligned_cols=133 Identities=15% Similarity=0.101 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------------------------------AILYAARAGV 94 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------~~~~~~~g~~ 94 (227)
++..-+...|.+++..|++.+|+..|.++..++|.. ..-|+--|..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 456778899999999999999999999999999875 2345555666
Q ss_pred HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHH
Q 041967 95 YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRR 173 (227)
Q Consensus 95 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 173 (227)
.+..+++..|+..-+++|..+|.+..+++..|.++..+|...+|+..|+.|..+.|.. ++...+-..+...+.+++|..
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 6777889999999999999999999999999999999999999999999999999998 889999999999999998887
Q ss_pred HHHHHHHH
Q 041967 174 KYERLRKE 181 (227)
Q Consensus 174 ~~~~~~~~ 181 (227)
-.+...+.
T Consensus 390 ~An~~~~~ 397 (564)
T KOG1174|consen 390 LANWTIRL 397 (564)
T ss_pred HHHHHHHH
Confidence 66555444
No 129
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.87 E-value=6.5e-08 Score=72.58 Aligned_cols=90 Identities=24% Similarity=0.220 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 041967 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK----------PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ-- 134 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 134 (227)
|+.|.+.++.....+|.++..+++-|.+++.+.+ ++.|+.-|+.||.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999999999888754 4568999999999999999999999999998874
Q ss_pred ---------HHHHHHHHHHHHhcCCChHHHH
Q 041967 135 ---------WEEAANDLHVASKLDYDEEIGM 156 (227)
Q Consensus 135 ---------~~~A~~~~~~a~~~~p~~~~~~ 156 (227)
|+.|..+|++|...+|+|+...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 7889999999999999996654
No 130
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8.7e-08 Score=80.16 Aligned_cols=136 Identities=16% Similarity=0.078 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH-------------------------
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA------------------------- 103 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~------------------------- 103 (227)
+...++..+|..+...++.++|+-.|..|+.+.|...++|-.+-.||+..|.+.+
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTL 411 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcce
Confidence 4567788888888888899998888998888888888888888888877777665
Q ss_pred -----------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHH
Q 041967 104 -----------AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHR 172 (227)
Q Consensus 104 -----------A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~ 172 (227)
|...++++++++|....+...+|.++..-|.+.+++..+++++...|+......++.+......+.++.
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 445555666677778888888888888999999999999999999888888888899988888899999
Q ss_pred HHHHHHHHHHHh
Q 041967 173 RKYERLRKEREL 184 (227)
Q Consensus 173 ~~~~~~~~~~~~ 184 (227)
..|..+.+.++.
T Consensus 492 ~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 492 EYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHhcCcc
Confidence 999888877665
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=5.6e-07 Score=70.92 Aligned_cols=172 Identities=14% Similarity=0.017 Sum_probs=138.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 133 (227)
+-....+.+-.|+.+-|..++++.....|.+.......|..+-..|++++|+++|+..+.-+|.+...+-+.--+...+|
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 33445566677999999999999988889999999999999999999999999999999999999999999888899999
Q ss_pred CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh---------hhcH-HH
Q 041967 134 QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQRKQA---------GADR-EA 202 (227)
Q Consensus 134 ~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~ 202 (227)
+..+|++.+...+..++.| ++|..+++++...|.+..|..+++.++=..|.......+.++-. .... -.
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999998866665433333332221 1111 11
Q ss_pred -Hhhhhh-hhhhhhhhhhhhhhccc
Q 041967 203 -LSGLRD-GMASDFFSLCFCNIVGA 225 (227)
Q Consensus 203 -~~~l~~-~~~~~~~~~~~~~~~~~ 225 (227)
.++--. ..+++.+.+|.|+.-.|
T Consensus 215 ~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHhChHhHHHHHHHHHHHHHHH
Confidence 111122 37788888888876544
No 132
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.85 E-value=7.2e-07 Score=67.40 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM-LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--AKGYKIRGM 127 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~ 127 (227)
..-.+.+|+.+...|++.+|...|++++. +.-+++..+..++...+..+++..|...++...+.+|.. ++....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 45578899999999999999999999997 667789999999999999999999999999999999864 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
++...|.+.+|...|+.++...|+....-..+......|...++..++..+.+.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 999999999999999999999999877777888888889888888888666544
No 133
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.85 E-value=8.4e-08 Score=81.72 Aligned_cols=70 Identities=19% Similarity=0.098 Sum_probs=67.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKG---YKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
.+|+++.+++++|.+|+..|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|+.+|++|+.+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999865 9999999999999999999999999983
No 134
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.85 E-value=1.7e-07 Score=75.89 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=89.4
Q ss_pred HHHHHHHHHHH-HHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHH
Q 041967 85 AILYAARAGVY-VKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGM 156 (227)
Q Consensus 85 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~ 156 (227)
...+|..|..+ +..|+|++|+..|+..+..+|+. +.+++++|.+|+..|++++|+..|.+++...|++ +++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46788888876 56799999999999999999998 5799999999999999999999999999999984 4466
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 157 ALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.++.++...|+..+|...|+.+++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 7888999999999999999999887765
No 135
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.8e-07 Score=79.19 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
-.+.++.++.+++.|-...+..+|++.|.++..+-|+++.++..+|..|-+-|+-.+|.+++-...+..|.+.+..-++|
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 34678889999999999999999999999998888888888887877777777666665555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhhhhHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDEEIGM-ALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
..|....-.+.|+.+|+++.-+.|+..-|. .+..+..+.|++..+...|+...
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555555555555555555555555543333 44444555555555555554433
No 136
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=1e-07 Score=80.43 Aligned_cols=104 Identities=18% Similarity=0.066 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----HHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----KGYKI 124 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~ 124 (227)
.....+...|..+...|++++|+..+.+++..+|+++.++..+|.+++..|++++|+..+++++...|..+ ..|+.
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 34456678889999999999999999999999999999999999999999999999999999999987543 35678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+|.++...|++++|+..|.++....|..
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~~~~~ 219 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAPSAES 219 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccccCC
Confidence 9999999999999999999998777743
No 137
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.81 E-value=2e-07 Score=81.89 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
+.-+.|+..-...+.+.+++.|..+|.++....|+ ...|+--+.+...+++.++|+..++.+++..|++.+.|..+|++
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 34566777777777788888888888888777664 57777788888888889999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+..+++.+.|...|...++..|.. ..|..+..+....|..-.|+..+++..-..+
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 999999999999999999999988 8888888888888888888888866654433
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=1.7e-07 Score=85.51 Aligned_cols=134 Identities=16% Similarity=0.075 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------------------------------------AILYAARAG 93 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~~g~ 93 (227)
.+.++..+|..|...-+...|..+|.+|.++++++ ...|..+|.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 45567777777777777778888888888777765 234445677
Q ss_pred HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH
Q 041967 94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR 172 (227)
Q Consensus 94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 172 (227)
.|...+++.+|+.+|+.+++.+|.+...|..+|.+|...|.|..|++.|.++..++|.+ -.....+.+.-..|++.++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 77777777888888888888888888888888888888888888888888888888877 33345555556678888888
Q ss_pred HHHHHHHHHHH
Q 041967 173 RKYERLRKERE 183 (227)
Q Consensus 173 ~~~~~~~~~~~ 183 (227)
..+........
T Consensus 651 d~l~~ii~~~s 661 (1238)
T KOG1127|consen 651 DALGLIIYAFS 661 (1238)
T ss_pred HHHHHHHHHHH
Confidence 77766654443
No 139
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.79 E-value=2.2e-07 Score=81.27 Aligned_cols=134 Identities=23% Similarity=0.205 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP----- 116 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----- 116 (227)
.+..+...|..|...++|.+|+..|++|+.+ +|..+.++.++|.+|+..|+|.+|..+|++|+.+..
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 3455667999999999999999999999975 344567899999999999999999999999987742
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCh-H---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 117 ---DSAKGYKIRGMARARLGQWEEAANDLHVASKLD-----YDE-E---IGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 117 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p~~-~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.-...+..++.++..++++++|+..+++++++- +++ . ...+++.++...|++.+|..-+++++...+
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 234578889999999999999999999998873 233 2 244899999999999999999988875553
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=5.6e-07 Score=79.38 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVY 95 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 95 (227)
....+-.+|..+++.|++++|...|...|..+|++..+|..+..|.
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3455666777777777777777777777766666644444444443
No 141
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=7.4e-08 Score=78.48 Aligned_cols=131 Identities=16% Similarity=0.053 Sum_probs=89.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 133 (227)
+...+.++-..+++++|+++|..+++.+|.+.++..-+|.-|+.-++++-|+.+|++++.+.-.++..+.++|.|....+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 34444455555555555555555555555555555555555555555555555555555555556667888888888888
Q ss_pred CHHHHHHHHHHHHhcCC--Ch--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 134 QWEEAANDLHVASKLDY--DE--EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 134 ~~~~A~~~~~~a~~~~p--~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+++-++.+|++|+..-. +. ++|.+++.+....|++.-|.+.|+.+...+..
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 88888999988887743 32 67888888888889988888888777665554
No 142
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.78 E-value=2e-07 Score=81.63 Aligned_cols=141 Identities=18% Similarity=0.123 Sum_probs=115.7
Q ss_pred ccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 43 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
+....+....++..+|..|..+|+|+.|+..+..++.. .|.-......+|.+|+..++|.+|+..|+.|+.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34444556677788999999999999999999999998 5655666777999999999999999999999876
Q ss_pred C-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----h-HH---HHHHHHHHHhhhhHHHHHHHHHH
Q 041967 115 N-----PDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----E-EI---GMALKKVEPNARRIQEHRRKYER 177 (227)
Q Consensus 115 ~-----p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~-~~---~~~l~~~~~~~~~~~~a~~~~~~ 177 (227)
. +++ ..++.++|.+|...|++++|..++++|+.+... . .+ ...++.+....++++++...+++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3 344 468999999999999999999999999988432 1 23 34777778888999999999887
Q ss_pred HHHHHH
Q 041967 178 LRKERE 183 (227)
Q Consensus 178 ~~~~~~ 183 (227)
..+.-.
T Consensus 351 al~i~~ 356 (508)
T KOG1840|consen 351 ALKIYL 356 (508)
T ss_pred HHHHHH
Confidence 776654
No 143
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.76 E-value=3.4e-08 Score=64.83 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIML---NPT----SAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
..+..+..+|.+++..|+|++|+.+|++++.+ .++ .+.++.++|.++...|++++|+.++++++.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566667777777777777777777776653 111 2445666666666666666666666666654
No 144
>PRK11906 transcriptional regulator; Provisional
Probab=98.75 E-value=4.2e-07 Score=77.66 Aligned_cols=127 Identities=14% Similarity=0.009 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHH
Q 041967 51 ANMTKLKAVDLISE---------GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKG 121 (227)
Q Consensus 51 ~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 121 (227)
+.+|..++.+++.. .+-.+|.+...+|++++|.++.++..+|.+....++++.|+..|++|+.++|+...+
T Consensus 295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~ 374 (458)
T PRK11906 295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL 374 (458)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH
Confidence 44555555555543 346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH-HH-HHhhhhHHHHHHHHHH
Q 041967 122 YKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALK-KV-EPNARRIQEHRRKYER 177 (227)
Q Consensus 122 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~-~~-~~~~~~~~~a~~~~~~ 177 (227)
|+..|.+++-.|+.++|..+++++++++|.-.....+. .+ .....-++++..-|-+
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 99999999999999999999999999999863322221 11 2233345666666643
No 145
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=1.5e-07 Score=82.43 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.+...+.+-.+|..+...|+-++|..+...++..++.+..+|-.+|.++...++|++|+.+|..|+.++|+|...|.-++
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS 116 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
.+...+++++.....-.+.++..|.. ..|........-.|++..+....+...+..
T Consensus 117 lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 117 LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998 667777777777888888887777766655
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.74 E-value=7.7e-07 Score=75.87 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=100.8
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041967 63 SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDL 142 (227)
Q Consensus 63 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 142 (227)
..+.++.|+..+++....+|. ....++.++...++..+|++.+.+++..+|.+...+...+..+...++++.|+...
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 356899999999998888875 45568889989999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 143 HVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 143 ~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
++++.+.|.+ ..|..|+.++...|+++.|...++.+
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999998 89999999999999999998777544
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.9e-07 Score=78.09 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...+.+++.++++.++|..|+....++|..+|.+.-++|.+|.++..+|+|+.|+.+|+++++++|.|..+...+..|-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred HcCCHHHH-HHHHHHHHhcCC
Q 041967 131 RLGQWEEA-ANDLHVASKLDY 150 (227)
Q Consensus 131 ~~g~~~~A-~~~~~~a~~~~p 150 (227)
....+... .+.|.+.+..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 76666544 667777766554
No 148
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.71 E-value=4.1e-07 Score=80.04 Aligned_cols=134 Identities=14% Similarity=0.040 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
+...|+..+....-.+..++|+++++++|+..|+++-.|..+|.++-++++.+.|...|...++..|.....|..++.+-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 34667788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
...|+.-.|...+.++.-.+|.+ ..|...-.+..+.|+...|...+.++....+
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999 7788888888999999999888877765554
No 149
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.69 E-value=2.2e-08 Score=65.83 Aligned_cols=67 Identities=30% Similarity=0.349 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETN----PD---SAKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 82 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
|+.+.++.++|.+|..+|++++|+.+|++++.+. ++ ...+++++|.++..+|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999999999999998662 22 2458899999999999999999999999876
No 150
>PRK15331 chaperone protein SicA; Provisional
Probab=98.69 E-value=5.1e-07 Score=67.11 Aligned_cols=103 Identities=11% Similarity=-0.078 Sum_probs=94.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967 79 MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA 157 (227)
Q Consensus 79 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~ 157 (227)
.+.++.....+..|.-++..|++++|...|+-+...+|.+++.|+.||.|+-.+++|+.|+..|..+..+++++ ...-.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34555677889999999999999999999999999999999999999999999999999999999999999988 55679
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 158 LKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
.+.++..+|+...|+..|......
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999887764
No 151
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.68 E-value=2.8e-06 Score=67.34 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---HHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK---GYK 123 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 123 (227)
.+..|+..|...++.|+|.+|+..|+......|.++ .+...++.++++.++++.|+..+++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 468999999999999999999999999999988864 58889999999999999999999999999998864 777
Q ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHhcCCChH----HH--------------HHHHHHHHhhhhHHHHHHHHHH
Q 041967 124 IRGMARARLGQ--------WEEAANDLHVASKLDYDEE----IG--------------MALKKVEPNARRIQEHRRKYER 177 (227)
Q Consensus 124 ~la~~~~~~g~--------~~~A~~~~~~a~~~~p~~~----~~--------------~~l~~~~~~~~~~~~a~~~~~~ 177 (227)
..|.+++..=+ ...|...|+..+...|+.. +. ..+++.+...|.+..+...++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 78888765442 4578999999999999841 11 2445556666666667777766
Q ss_pred HHHHHH
Q 041967 178 LRKERE 183 (227)
Q Consensus 178 ~~~~~~ 183 (227)
+.+.-+
T Consensus 193 v~e~y~ 198 (254)
T COG4105 193 VLENYP 198 (254)
T ss_pred HHhccc
Confidence 665544
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=3.9e-07 Score=77.66 Aligned_cols=100 Identities=24% Similarity=0.240 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
++....++.+++..++..+|++.+.+++..+|.+...+...+..++..++++.|+..+++++.+.|..-..|+.|+.+|.
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCC
Q 041967 131 RLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p 150 (227)
.+|+++.|+..+..+.-..+
T Consensus 280 ~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 280 QLGDFENALLALNSCPMLTY 299 (395)
T ss_pred hcCCHHHHHHHHhcCcCCCC
Confidence 99999999988886654433
No 153
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=3e-06 Score=74.85 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
...+++-++..+-..|++++|+.++++||...|+.+..|+..|.++-+.|++.+|...++.|-.+|+.+--.-...+..+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999998887777788999
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CCh------HHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLD--YDE------EIGM--ALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~--p~~------~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.+.|++++|...+....+-+ |.. .+|- ..+..+.+.|++..|.+.|....+...
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999887765 221 1243 567778899999999999977776644
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=1.4e-06 Score=62.02 Aligned_cols=94 Identities=18% Similarity=0.004 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---h-HHHHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYD---E-EIGMAL 158 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~-~~~~~l 158 (227)
.+.|++|.++-..|+.++|+..|++++...... ..+++.+|.++..+|++++|+..+++++...|+ + .+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999986554 569999999999999999999999999999898 5 445577
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 041967 159 KKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~ 179 (227)
..+....|+..++...+-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 788889999999998885443
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.63 E-value=6e-07 Score=79.46 Aligned_cols=108 Identities=19% Similarity=0.085 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC
Q 041967 49 DAANMTKLKAVDLISE--------GKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS 118 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 118 (227)
+.+.++-.++.++... .+...+.....+++.+ +|.++.++..+|..+...|++++|...+++++.++| +
T Consensus 374 ~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s 452 (517)
T PRK10153 374 DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-S 452 (517)
T ss_pred CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C
Confidence 3444555555554443 2345666667776664 777889999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 041967 119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMA 157 (227)
Q Consensus 119 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 157 (227)
..+|+.+|.++...|++++|+..|++|+.++|.++.+..
T Consensus 453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 789999999999999999999999999999999855443
No 156
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=1.3e-06 Score=69.76 Aligned_cols=100 Identities=15% Similarity=0.019 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKK 160 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~ 160 (227)
.|+-|.-+++.|+|..|.+.|..-+...|+. +.++||||.+++.+|+|++|...|..+++-.|+. +....++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7999999999999999999999999999987 4799999999999999999999999999999985 45678899
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhHH
Q 041967 161 VEPNARRIQEHRRKYERLRKERELKNF 187 (227)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 187 (227)
+...+|+.++|...++.+.+.-+....
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999988776443
No 157
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=8.2e-07 Score=78.88 Aligned_cols=130 Identities=18% Similarity=0.107 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------------------------HHHHcCCcH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAG----------------------------VYVKLNKPN 102 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~----------------------------~~~~~~~~~ 102 (227)
.+.|-....+|...|+..+|.....+-++.+| ++..|..+|. ..+..++|.
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDP-DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 45666777888888888888888888887444 4444443332 234468899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 103 AAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 103 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
++..+++..++++|-....||.+|.|..+++++..|..+|..++.++|++ +.|.++...+...++-.++...++++.|-
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999988888888777643
No 158
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.58 E-value=3.3e-06 Score=65.94 Aligned_cols=120 Identities=18% Similarity=0.075 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHhC
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLN-----------KPNAAIRDAYVALETN 115 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~ 115 (227)
...+.+.+|..+++.|+|.+|+..|++.+...|++ +.+++.+|.+++... ...+|+..|+..+...
T Consensus 41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 45788999999999999999999999999999986 458999999987653 2458999999999999
Q ss_pred CCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhhhhHH
Q 041967 116 PDSAK-----------------GYKIRGMARARLGQWEEAANDLHVASKLDYDEE----IGMALKKVEPNARRIQ 169 (227)
Q Consensus 116 p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~l~~~~~~~~~~~ 169 (227)
|+... --+..|..|.+.|.+..|+..++.+++..|+.. +...+...+..+|...
T Consensus 121 P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 121 PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 99742 234468899999999999999999999999852 2345666666666544
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.57 E-value=1.1e-05 Score=64.81 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC---------------C---cHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLN---------------K---PNAAIRDA 108 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~---------------~---~~~A~~~~ 108 (227)
...+.+.+|..+++.++|++|+..|++.++.+|++ +.+++.+|.++...+ + ...|+..|
T Consensus 68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 34567999999999999999999999999999986 568999999875554 1 25788999
Q ss_pred HHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhhhh
Q 041967 109 YVALETNPDSAK-----------------GYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKKVEPNARR 167 (227)
Q Consensus 109 ~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~~~~~~~~ 167 (227)
+..+...|+..- --+..|..|.+.|.|..|+.-++.++.-.|+. ++...+...+..+|.
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 999999998742 12345778999999999999999999999985 334466677777777
Q ss_pred HHHHHHHHH
Q 041967 168 IQEHRRKYE 176 (227)
Q Consensus 168 ~~~a~~~~~ 176 (227)
..++.....
T Consensus 228 ~~~a~~~~~ 236 (243)
T PRK10866 228 NAQADKVAK 236 (243)
T ss_pred hHHHHHHHH
Confidence 777666543
No 160
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=9.2e-07 Score=81.89 Aligned_cols=99 Identities=15% Similarity=0.017 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------------HHHHHHHHHHHHcCCcHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-------------------ILYAARAGVYVKLNKPNAAIRDA 108 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~~g~~~~~~~~~~~A~~~~ 108 (227)
++....++..|..+++.+++.++... .++..-+.+. .+++.+|.||-++|++++|...+
T Consensus 62 P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~y 139 (906)
T PRK14720 62 KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVW 139 (906)
T ss_pred CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence 35567788889999988888777666 6666555554 89999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 109 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
+++++++|+++.++.++|..|... +.+.|..++.+|+...
T Consensus 140 er~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 140 ERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999998874
No 161
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=8.8e-05 Score=56.92 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-----KGYKIRGM 127 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~ 127 (227)
.++..+..-+...+-++++.-... +-.-|.-++..|+|.+|..-|..||.+.|..+ -.|.+.|.
T Consensus 74 eLmae~E~i~~deek~k~~~kad~-----------lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraa 142 (271)
T KOG4234|consen 74 ELMAEIEKIFSDEEKDKAIEKADS-----------LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAA 142 (271)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHH-----------HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHH
Confidence 444444444444344444443333 33367888899999999999999999999765 36788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELK 185 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (227)
++..++..+.|+..+.+++.++|+. .+....+..+.+..+++++...|+++....+..
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999998 666677888899999999999999998777653
No 162
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.44 E-value=9.7e-06 Score=66.78 Aligned_cols=134 Identities=17% Similarity=0.099 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN--KPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
..+.......++++.++++.|.+.+..+-..+.++..+....+++.+..| .+..|...|+......+.++..+..++.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34566667789999999999999999998888776666666666666666 5999999999988888899999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR-RKYERLRKERE 183 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~ 183 (227)
|+..+|++++|...+..++..+|.+ +...++.-+....|+..+.. +.+..+....+
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999999999999999999999998 76778878888888874444 44455554443
No 163
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.44 E-value=4.2e-05 Score=56.33 Aligned_cols=99 Identities=21% Similarity=0.135 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCcHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------------------AILYAARAGVYVKLNKPNAAIRD 107 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~g~~~~~~~~~~~A~~~ 107 (227)
..+.+...|......++...++..+.+++.+.... ..+...++..+...|++..|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 45667777888888999999999999999875332 34556677778889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 108 AYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 108 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
+.+++..+|.+..+|..+-.+|...|++..|+..|.++...
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877543
No 164
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.42 E-value=6.7e-07 Score=51.99 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
.++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666666666666666666666666666666666654
No 165
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.40 E-value=2.8e-06 Score=77.87 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
..|..+|..++..+++.+|+..|+.++..+|.+..+|..+|.+|...|.+..|+..|.++..++|.+.-+.|..+.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 45666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967 132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA 165 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~ 165 (227)
+|.|.+|+..+...+...... .....++++..+.
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999888776554 3333555554443
No 166
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.35 E-value=3.1e-06 Score=69.61 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR 166 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~ 166 (227)
+-..|.-|+++|.|++||.+|.+++..+|.|+..+.++|.+|+++..|..|...+..|+.++..- .+....+.....+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 55689999999999999999999999999999999999999999999999999999999998654 44445566667889
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 041967 167 RIQEHRRKYERLRKEREL 184 (227)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~ 184 (227)
...+|+..++......+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 999999999888766554
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.34 E-value=8e-06 Score=67.08 Aligned_cols=132 Identities=23% Similarity=0.183 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--C--
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP--TS----AILYAARAGVYVKLNKPNAAIRDAYVALETNPD--S-- 118 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~-- 118 (227)
..+..+...|+.+...++|++|..+|.++....- .+ +..+...+.++.+. ++..|+.++++++.+.-. .
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 4567888889999999999999999999987532 11 45677777787666 999999999999987422 2
Q ss_pred --HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 119 --AKGYKIRGMARARL-GQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 119 --~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
...+..+|.+|... |+++.|+.+|++|..+...+ .....++.+....|++.+|...|++....
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35888999999999 99999999999999984332 23457888889999999999999877643
No 168
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.31 E-value=6.8e-07 Score=48.88 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=16.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967 108 AYVALETNPDSAKGYKIRGMARARLGQWEEAA 139 (227)
Q Consensus 108 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 139 (227)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 169
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.30 E-value=9.9e-06 Score=66.73 Aligned_cols=99 Identities=19% Similarity=0.094 Sum_probs=81.4
Q ss_pred HHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967 57 KAVDLISEG--KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134 (227)
Q Consensus 57 ~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 134 (227)
.+.+.+..| .+++|.-.|++.....|.++..+..++.|++.+|+|++|...+.+++..+|.++..+.+++.+...+|+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 334444444 699999999998888788999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHHhcCCChHHH
Q 041967 135 W-EEAANDLHVASKLDYDEEIG 155 (227)
Q Consensus 135 ~-~~A~~~~~~a~~~~p~~~~~ 155 (227)
. +.+.+++.+....+|.++..
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSHHH
T ss_pred ChhHHHHHHHHHHHhCCCChHH
Confidence 8 56777888888889987443
No 170
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.29 E-value=1.2e-06 Score=47.95 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Q 041967 73 QLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIR 106 (227)
Q Consensus 73 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 106 (227)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999863
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.29 E-value=3.9e-05 Score=62.94 Aligned_cols=129 Identities=14% Similarity=-0.028 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL-NKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
+|....+...+.+..+.|...|.+|+...+....+|...|...++. ++.+.|...|+.+++..|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3445555666666799999999999966666788999999998885 566669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 132 LGQWEEAANDLHVASKLDYDEE----IGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
.|+.+.|...|++++..-|... +|..........|++.....-.+++...
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999988765 5666666667777766555555554443
No 172
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.27 E-value=7.8e-05 Score=62.36 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=114.4
Q ss_pred ccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967 43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY 122 (227)
Q Consensus 43 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 122 (227)
++...++.++.-...+..+...|++++|.+....+++..-+ +.....++. ...+++..=++..++.++..|+++..+
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHhh--cCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 44444456778888899999999999999999999997654 333322332 368999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
..+|.++...+.+.+|..+|+.+++..|+...+..++.++...|+..++...++...
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876554
No 173
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=4.7e-05 Score=66.56 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGM 127 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~ 127 (227)
...++.--+.+..+++|++|+....+.+...|++..++...-.|+.+.+.|+.|+.. |+.++.. ....|..+-
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHH
Confidence 356777778889999999999999999999999999999999999999999999944 4444421 122378999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|.++++..++|++.+. .+++.+ .....-+.+..+++++.++..-|+.+.+....
T Consensus 88 c~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred HHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 9999999999999998 455555 46667788999999999999999999766543
No 174
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.25 E-value=0.00042 Score=58.09 Aligned_cols=140 Identities=15% Similarity=0.026 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-SAKGYKIRGM 127 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~ 127 (227)
..+......|..-+..|+|.+|.....++-+-.+.-..+|..-+.+.-++|+++.+=.++.++-+..++ ...+...++.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 456777888999999999999999999988877776777888888999999999999999999999444 4578889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKNFE 188 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (227)
++...|++..|.....+++.+.|.+ .+......++...|+|........++.|..-..+.+
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 9999999999999999999999999 778888999999999999999988888776554433
No 175
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.25 E-value=3.4e-06 Score=48.96 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAG 93 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 93 (227)
..++.+|..+...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578899999999999999999999999999999999998875
No 176
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.24 E-value=2.2e-06 Score=46.74 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967 87 LYAARAGVYVKLNKPNAAIRDAYVALETNP 116 (227)
Q Consensus 87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 116 (227)
+|+++|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444444444444444444444444444
No 177
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=0.00014 Score=62.47 Aligned_cols=130 Identities=18% Similarity=0.074 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....|...|.-...+++++.|...|++||..+-.+...|...+.+.++.++..-|...+++|+.+=|.--..|+..-.+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34567788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
..+|+...|.+.|.+=+...|+..+|...-....+..+++-++.-|.+.+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888888888888888887765
No 178
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.16 E-value=6e-06 Score=44.92 Aligned_cols=34 Identities=38% Similarity=0.423 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 119 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 179
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.15 E-value=6.8e-06 Score=44.57 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNP 116 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 116 (227)
++.+|.+++..|++++|+.+|++++.++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.14 E-value=3.5e-05 Score=63.32 Aligned_cols=136 Identities=18% Similarity=0.125 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---
Q 041967 49 DAANMTKLKAVDLISE-GKLEDAIGQLTEAIMLNPT--S----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--- 118 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--- 118 (227)
..+..+...|..+... |++++|+.+|++|+++... . ..++...|.++...|+|.+|+..|+++....-.+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 3567889999999998 9999999999999986422 2 3578889999999999999999999998754221
Q ss_pred ---H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHh
Q 041967 119 ---A-KGYKIRGMARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVE-----PNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 119 ---~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
. ..++..+.|+...|++..|...|++....+|.. .-...+..+. .....+..+...|..+.+.++-
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 2 356778899999999999999999999999863 1122222222 1344456666666666555443
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=1.2e-05 Score=69.49 Aligned_cols=105 Identities=24% Similarity=0.187 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL---NKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
+..++.++..|+..+..+.+..|+..|.+++...|+....|.+++.++++. |+.-.|+.++..+++++|...++|++
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 356888999999999999999999999999999999999999999999986 57788999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
++.++..++.+.+|+.+...+...+|.+
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999999999888888866
No 182
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.14 E-value=0.00015 Score=52.82 Aligned_cols=69 Identities=16% Similarity=0.034 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+..++..|...+..|+|.+|+..|+.+....|.. ..+.+.+|.+|+..+++..|+..+++.++++|++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 46789999999999999999999999999999876 4789999999999999999999999999999997
No 183
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.10 E-value=0.00038 Score=52.87 Aligned_cols=132 Identities=27% Similarity=0.241 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAG-VYVKLNKPNAAIRDAYVALETNP---DSAKGYKIRG 126 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la 126 (227)
...++..|......+++..++..+..++...+.........+. ++...|++..|+..+.+++...| .....+..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 4456666666666666777777777776665555444444444 66667777777777777666555 3445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYD-E-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
..+...+++..|+..+.+++...+. . .....++......+.+..+...+.......
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 5566666777777777777777666 3 445555666665555666666665554443
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.08 E-value=1.4e-05 Score=67.40 Aligned_cols=133 Identities=17% Similarity=0.129 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcH
Q 041967 49 DAANMTKLKAVDLISEGK--------------------LEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPN 102 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~--------------------~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~ 102 (227)
....+++++|++|..+|+ ++.|.++|..-|++.... ..++-++|..|+.+|+|+
T Consensus 133 ~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~ 212 (639)
T KOG1130|consen 133 LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFD 212 (639)
T ss_pred hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHH
Confidence 356789999999988875 456677777666654332 357888899999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h-----HHHHHHHHHHHhhhhHH
Q 041967 103 AAIRDAYVALETNPDS------AKGYKIRGMARARLGQWEEAANDLHVASKLDYD--E-----EIGMALKKVEPNARRIQ 169 (227)
Q Consensus 103 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-----~~~~~l~~~~~~~~~~~ 169 (227)
.||..-+.-+.+-..+ ..++.++|.|+.-+|+++.|+++|++.+.+.-. + .....|+..+.-..++.
T Consensus 213 ~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~ 292 (639)
T KOG1130|consen 213 QAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ 292 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH
Confidence 9998887766654333 358888999999999999999999887655321 1 22346666666666677
Q ss_pred HHHHHHHHHHHH
Q 041967 170 EHRRKYERLRKE 181 (227)
Q Consensus 170 ~a~~~~~~~~~~ 181 (227)
.|+..+.+..+.
T Consensus 293 kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 293 KAITYHQRHLAI 304 (639)
T ss_pred HHHHHHHHHHHH
Confidence 777666555433
No 185
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00022 Score=62.50 Aligned_cols=127 Identities=20% Similarity=0.128 Sum_probs=101.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-----------------
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD----------------- 117 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------------- 117 (227)
|.++-++++.+..++|+.+++ -.++.+.-+...+|.+++++++|++|+..|+..++.+.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 789999999999999999998 446666678888999999999999999999998765432
Q ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------C--------hHHHHHHHHHHHhhhh
Q 041967 118 --------------SAKGYKIRGMARARLGQWEEAANDLHVASKLDY--------D--------EEIGMALKKVEPNARR 167 (227)
Q Consensus 118 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~--------~~~~~~l~~~~~~~~~ 167 (227)
.-..+|+.|.++...|+|.+|++.+++++++.- . +.+...+.-++...|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 224788999999999999999999999944421 1 1224477777888899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041967 168 IQEHRRKYERLRKEREL 184 (227)
Q Consensus 168 ~~~a~~~~~~~~~~~~~ 184 (227)
..++..-|....+....
T Consensus 240 t~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA 256 (652)
T ss_pred hHHHHHHHHHHHHhcCC
Confidence 99999888777766654
No 186
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.06 E-value=1.5e-05 Score=43.21 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS 84 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 84 (227)
++.++.+|..++..|+|++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00017 Score=57.64 Aligned_cols=139 Identities=6% Similarity=-0.013 Sum_probs=113.1
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------CCC
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN-PTSAILYAARAGVYVKLNKPNAAIRDAYVALETN------PDS 118 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~ 118 (227)
..+......+....++...|.|.-.+..|.+.++.+ |..+.....+|.+.++.|+.+.|..+|+.+-+.+ ..+
T Consensus 172 W~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 172 WRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 344555677888899999999999999999999988 6688889999999999999999999999654432 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIG-MALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 119 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
..+..+.+.++.-.++|..|...|.+++..+|.+.+. .+-+-+....|+..+|.+.++.+....+.
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 4577778888889999999999999999999998554 46666777889999999998888766654
No 188
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.05 E-value=0.00051 Score=65.91 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRGMAR 129 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 129 (227)
.|......+.+.|++++|+..|.+.... .|+ ...|..+...+.+.|++++|.+.+...++.. +.+...|..+..+|
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3344444444555555555555554443 232 3344444455555555555555555554433 22344555555555
Q ss_pred HHcCCHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASK--LDYDEEIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
.+.|++++|...|..... +.|+...|..+-..+.+.|++++|...+..+.
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555433 23333444445455555555555555554443
No 189
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.04 E-value=0.00021 Score=51.12 Aligned_cols=92 Identities=22% Similarity=0.129 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H----HHHHHHHHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E----IGMALKKVE 162 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~----~~~~l~~~~ 162 (227)
+-..|......|+.+.|++.|.+++.+-|.++.+|.+++.++.-+|+.++|+..+.+++.+..+. . .....+-++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34467888889999999999999999999999999999999999999999999999999996553 2 233556677
Q ss_pred HhhhhHHHHHHHHHHHH
Q 041967 163 PNARRIQEHRRKYERLR 179 (227)
Q Consensus 163 ~~~~~~~~a~~~~~~~~ 179 (227)
...|+.+.++..|....
T Consensus 126 Rl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAA 142 (175)
T ss_pred HHhCchHHHHHhHHHHH
Confidence 78888899998886654
No 190
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.03 E-value=0.0002 Score=54.00 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh---
Q 041967 101 PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ----------WEEAANDLHVASKLDYDE-EIGMALKKVEPNAR--- 166 (227)
Q Consensus 101 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~--- 166 (227)
|+.|.+.++.....+|.+...+++.|.++..+.+ +++|+.-|+.|+.++|+. ++...++..+...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999999999888754 567899999999999997 66555555553333
Q ss_pred --------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHhhh
Q 041967 167 --------RIQEHRRKYERLRKERELKNFERERQRKQAGADREALSGL 206 (227)
Q Consensus 167 --------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (227)
.++.|..+|++++..++..... .+..+...+.|++..-+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y-~ksLe~~~kap~lh~e~ 133 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY-RKSLEMAAKAPELHMEI 133 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHH-HHHHHHHHTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHhhHHHHHHH
Confidence 3667778888888888875555 44444445556554433
No 191
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.02 E-value=0.00058 Score=65.55 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=20.8
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 041967 91 RAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRGMARARLGQWEEAANDLHVA 145 (227)
Q Consensus 91 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 145 (227)
+..+|.+.|++++|...|+...+.+ +.+...|..+...|.+.|++++|...|...
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333334444444444444333332 122233333333333344444444333333
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.01 E-value=0.0008 Score=51.02 Aligned_cols=124 Identities=26% Similarity=0.257 Sum_probs=103.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Q 041967 60 DLISEGKLEDAIGQLTEAIMLNP---TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-SAKGYKIRGMARARLGQW 135 (227)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~ 135 (227)
.+...|+++.|+..|.+++...| .....+..++..+...+++..++..+..++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 88999999999999999999777 35667777788788899999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 136 EEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 136 ~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..|...+..++...|.. .....+.......+.+..+...+.+.....+
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999984 4455555555555667777777766655444
No 193
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.01 E-value=0.00018 Score=66.51 Aligned_cols=126 Identities=14% Similarity=0.024 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRGM 127 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 127 (227)
...|..+...+.+.|++++|+.+|.+.... .| +...|..+..++.+.|.++.|.+.+..+++.. +.+...+..+..
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 456777888888888888888888887653 33 34556666666777777777777777666654 334455555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
.|.+.|++++|...|.+..+ |+-..|..+...+.+.|+.++|..-++++.
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666666655432 222445555555555566666655555544
No 194
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=8.9e-05 Score=60.22 Aligned_cols=124 Identities=17% Similarity=0.105 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH------------------
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE------------------ 113 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------ 113 (227)
..+..+|-+|+..++|..|-.+|.+.-...|....+.+..+..+++.+.+..|+.+......
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 34555566666666666666666665555565555555555555555555555444332211
Q ss_pred ------------hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 114 ------------TNP--DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 114 ------------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
.-| +.....++.|.++++-|+|+.|++-|+.+++...-+ .+..++.-...+.+++..|....
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 012 223355556666666666666666666666665554 44445666666666666555554
No 195
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0002 Score=59.50 Aligned_cols=59 Identities=19% Similarity=-0.012 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 110 (227)
..-..+|.++|..|+|++|+..|..+...+.-.+..+.+++.|++..|.|.+|.+...+
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 44556788889999999999999888775554567778888888888877776665444
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.00084 Score=61.52 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=89.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEA 138 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 138 (227)
...+..++|.+|+....+.++..|+...+....|..+.++|..++|..+++..-...+++...+..+-.||..+|++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 44566788888888888888888888888888888888888888888777777777777777888888888888888888
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 139 ANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 139 ~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
...|+++...+|.......+=..+.+-+.+.+-++.--++.|
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888843333333334444444443333333333
No 197
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=3.9e-05 Score=59.52 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP 163 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~ 163 (227)
+..++.+|..|-..|-..-|..+|.+++.++|+.+.++..+|.-+...|+|+.|...|...++++|.. -...+.+....
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45678889999889999999999999999999999999999999999999999999999999999997 44445555555
Q ss_pred hhhhHHHHHHHHHHHHH
Q 041967 164 NARRIQEHRRKYERLRK 180 (227)
Q Consensus 164 ~~~~~~~a~~~~~~~~~ 180 (227)
.-|++.-|...+.+...
T Consensus 145 Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred ecCchHhhHHHHHHHHh
Confidence 55666666666555443
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.86 E-value=6.1e-05 Score=63.57 Aligned_cols=132 Identities=9% Similarity=-0.056 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHH----hCCCCH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALE----TNPDSA 119 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~ 119 (227)
+..++-++|++|+-.|+|++|+..-+.-|.+.... -.++.|+|.||.-.|+|+-|+++|...+. +.....
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 34567778999999999999999988877764332 46899999999999999999999998654 333333
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 120 --KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 120 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
..-|.+|.+|.-+.++..|+.++++-+.+.-.- .+...|+..+..+|+.+.|..........
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999988775331 22346666677777777777766555433
No 199
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00042 Score=57.61 Aligned_cols=87 Identities=21% Similarity=0.132 Sum_probs=74.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTSA-ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE 137 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 137 (227)
..++.+.||..|+.+++-.+..+.... ..-..+|.|+++.|+|++|+..|..+...+..+.+.+.++|.|++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 556788999999999998887654433 5666699999999999999999999998877788999999999999999999
Q ss_pred HHHHHHHH
Q 041967 138 AANDLHVA 145 (227)
Q Consensus 138 A~~~~~~a 145 (227)
|...-.+|
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98876655
No 200
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.2e-05 Score=58.76 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhH
Q 041967 90 ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRI 168 (227)
Q Consensus 90 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~ 168 (227)
.-|..++....|..|+.+|.++|.++|..+.+|.+.+.|+..+.+++.+...+.+++++.|+. .....++........+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 346677777889999999999999999999999999999999999999999999999999987 5566888888888889
Q ss_pred HHHHHHHHHHH
Q 041967 169 QEHRRKYERLR 179 (227)
Q Consensus 169 ~~a~~~~~~~~ 179 (227)
.++...+.+..
T Consensus 95 ~eaI~~Lqra~ 105 (284)
T KOG4642|consen 95 DEAIKVLQRAY 105 (284)
T ss_pred cHHHHHHHHHH
Confidence 99988887663
No 201
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.83 E-value=0.00054 Score=63.30 Aligned_cols=128 Identities=11% Similarity=0.003 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC---C----------
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN---P---------- 116 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p---------- 116 (227)
..|..+...|.+.|++++|+..|++.+.. .|+ ...+..+..++.+.|..++|...|+...+.. |
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 44555556666666666666666665542 232 2233333344444444444444444443321 1
Q ss_pred ---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHH
Q 041967 117 ---------------------DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRK 174 (227)
Q Consensus 117 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~ 174 (227)
.+...|..+...+...|+++.|...+++++.+.|.+ .....+..++...|++++|..-
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 123346666666667777777777777777777776 5566677777777888877777
Q ss_pred HHHHHH
Q 041967 175 YERLRK 180 (227)
Q Consensus 175 ~~~~~~ 180 (227)
++.+.+
T Consensus 551 ~~~m~~ 556 (697)
T PLN03081 551 VETLKR 556 (697)
T ss_pred HHHHHH
Confidence 766553
No 202
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00068 Score=56.02 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-CCCCH---HHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET-NPDSA---KGYKIRGMA 128 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~---~~~~~la~~ 128 (227)
..-..+...+.+|++.+|-...++.|+-.|++..++..--.+++.+|+.......+++++-. +|+-| -+.-.++.+
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34445667888999999999999999999999988888888899999999999999999987 66664 444557888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDEE-IGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
+...|-|++|.+.-.++++++|.+. +......+..-.++++++++.+.+..
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 9999999999999999999999883 34577788888888888888776654
No 203
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0039 Score=50.72 Aligned_cols=132 Identities=17% Similarity=0.089 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-AKGYKIRGMAR 129 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 129 (227)
.+.-+..+...+..|++.+|...|..++...|.+..+...++.||...|+.+.|...+...=....+. .......-..+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999877765532221111 11111111222
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.+.....+ ...+++.+..+|+| .....++..+...|+.++|...+-.+.+.+.
T Consensus 214 ~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 214 EQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 23222222 23356667778877 7777788888888888888887766655533
No 204
>PLN03077 Protein ECB2; Provisional
Probab=97.72 E-value=0.002 Score=61.03 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=54.9
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhhhhHHH
Q 041967 93 GVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL--DYDEEIGMALKKVEPNARRIQE 170 (227)
Q Consensus 93 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~l~~~~~~~~~~~~ 170 (227)
..|.+.|+.++|...|+.. +.+...|..+...|...|+.++|+..|++.... .|+......+-..+.+.|.+++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 4455556666666655553 445666777777788888888888888877663 4554444444455667777778
Q ss_pred HHHHHHHHHH
Q 041967 171 HRRKYERLRK 180 (227)
Q Consensus 171 a~~~~~~~~~ 180 (227)
+...|+.+.+
T Consensus 608 a~~~f~~M~~ 617 (857)
T PLN03077 608 GLEYFHSMEE 617 (857)
T ss_pred HHHHHHHHHH
Confidence 7777776663
No 205
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0013 Score=52.07 Aligned_cols=102 Identities=8% Similarity=-0.028 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALET--------NPDS----------AKGYKIRGMARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~ 146 (227)
..++...|.-+++.|+|.+|...|..||.. .|.. ...+.++..|+...|+|-+++.++...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 457788999999999999999999988643 3433 3478899999999999999999999999
Q ss_pred hcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967 147 KLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN 186 (227)
Q Consensus 147 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (227)
...|+| .+.-.-++......+..+|+..+.+.....+...
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 999999 5666667777777888899999988887776543
No 206
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.69 E-value=8.4e-05 Score=40.20 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=10.2
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967 89 AARAGVYVKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 89 ~~~g~~~~~~~~~~~A~~~~~~al~~~ 115 (227)
+.+|.+|..+|++++|+..|+++++++
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 333333333333333333333333333
No 207
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.67 E-value=0.0012 Score=57.29 Aligned_cols=121 Identities=16% Similarity=0.036 Sum_probs=90.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC------------------
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD------------------ 117 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------ 117 (227)
..-....+..+++.-++...+||+++|+++.+|..++.-. .....+|...++++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 4445667889999999999999999999999998887532 23345666666666553210
Q ss_pred -----C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 118 -----S--AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 118 -----~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
+ ..+..++|.|..++|..++|++.+...++.+|.. .+..+|...+...+.+.++..-+.+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1 2255678999999999999999999999988863 45667888887777777777666554
No 208
>PLN03077 Protein ECB2; Provisional
Probab=97.67 E-value=0.0016 Score=61.60 Aligned_cols=120 Identities=14% Similarity=0.065 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM--LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SAKGYKIRG 126 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la 126 (227)
...|......+.+.|+.++|+..|++... ..|+... +..+-..+.+.|.+++|...|+......+- +...|..+.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 45777888888888888888888888776 3465443 444445566778888888888877744322 335666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHR 172 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~ 172 (227)
.++.+.|++++|...+++. .+.|+..+|..+-..+...++.+.+.
T Consensus 633 ~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 7777777777777766654 24444444443333333333333333
No 209
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00012 Score=59.53 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh----CCCC------
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET----NPDS------ 118 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~------ 118 (227)
+.+....+.|+..++.|+|+.|++.|+.|+......+-.-++++.|+++.+++..|+.....++.. .|..
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 357888999999999999999999999999999999999999999999999999999998877654 3321
Q ss_pred -------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 041967 119 -------------------AKGYKIRGMARARLGQWEEAANDL 142 (227)
Q Consensus 119 -------------------~~~~~~la~~~~~~g~~~~A~~~~ 142 (227)
..++...+-++++.++++.|...+
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 125666778899999988887654
No 210
>PRK10941 hypothetical protein; Provisional
Probab=97.64 E-value=0.0013 Score=53.58 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
+.++=.+|.+.++++.|+.+.+.++.+.|+++.-+.-+|.+|.++|.+..|...++..+...|+++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3344445555555555555555555555555555555555555555555555555555555555533
No 211
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.63 E-value=0.0021 Score=61.68 Aligned_cols=125 Identities=14% Similarity=-0.001 Sum_probs=106.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SAKGYKIRGMARARL 132 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 132 (227)
..+...|-+.+.+++|.++|+..++........|..+|..++...+-++|...+.+|++.-|. +....-..|.+-+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 334555666778899999999999888777889999999999999999999999999999888 667888889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 133 GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
|+.+.+...|+-.+.-.|.- +.|.-+.......++....+.-|++..
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999987 888888788788888888888877665
No 212
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00015 Score=62.47 Aligned_cols=115 Identities=17% Similarity=0.042 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-h----
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEA-IMLNPT--------SAILYAARAGVYVKLNKPNAAIRDAYVALE-T---- 114 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~---- 114 (227)
+.+..++.+++.++..|+|.+|.+.+... +...|. .-.+|.|+|.++++++.|..++..|.+|++ .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999987652 222232 234678999999999999999999999996 1
Q ss_pred ----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967 115 ----NP---------DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP 163 (227)
Q Consensus 115 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~ 163 (227)
.| ..-...|+.|..|...|++..|.++|.+++.+...+ ..|..+++++.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11 123589999999999999999999999999999888 88988888774
No 213
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.0035 Score=54.15 Aligned_cols=130 Identities=18% Similarity=0.122 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..|...|...+++.+...|...+-.||-.+|.+-. .-.......++++++.+...|++-|...|.+..+|...|.+-
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 3455666667777777777777777777777776433 223345556677777888888888888888877888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
..+|+.+.|...|.-|+....-+ -.|...-......|+++.++.-|+++..
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 88888887777777777664333 2244444444556666666666666553
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.60 E-value=0.00013 Score=39.46 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+|+.+|.++..+|+++.|..+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999853
No 215
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.0023 Score=48.98 Aligned_cols=96 Identities=22% Similarity=0.138 Sum_probs=46.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-AKGYKIRGMAR 129 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 129 (227)
....+..++..+++++|+..++.++....+. +.+-.++|.+.+..|.+++|+..+..... +.+ +..--..|.++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil 169 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence 3445555555555555555555555433221 23444555555555555555555443221 111 11233345555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC
Q 041967 130 ARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
...|+-.+|...|.+++..+++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 5555555555555555555533
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.002 Score=56.71 Aligned_cols=105 Identities=19% Similarity=0.053 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 041967 64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----KGYKIRGMARARLGQWEEAA 139 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~ 139 (227)
..+...|.+.+.......|+++..++..|+.+...|+.++|+..|++++....... -.++.+|.++..++++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45678899999999999999999999999999999999999999999886444332 37888999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHH-HHHHHHHhhhhH
Q 041967 140 NDLHVASKLDYDE-EIGM-ALKKVEPNARRI 168 (227)
Q Consensus 140 ~~~~~a~~~~p~~-~~~~-~l~~~~~~~~~~ 168 (227)
.+|.+..+.+.-. .... ..+.++...++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999877655 3333 445555566666
No 217
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0021 Score=53.02 Aligned_cols=89 Identities=24% Similarity=0.194 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALK 159 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~ 159 (227)
+.-+-.-|.-|++.++|..|+..|..+|+..-.+ ...|.++|-|...+|+|..|+..+.+++.++|++ .....-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3456677999999999999999999999987554 4578999999999999999999999999999998 4333334
Q ss_pred HHHHhhhhHHHHHH
Q 041967 160 KVEPNARRIQEHRR 173 (227)
Q Consensus 160 ~~~~~~~~~~~a~~ 173 (227)
.+...+..+.++..
T Consensus 161 kc~~eLe~~~~a~n 174 (390)
T KOG0551|consen 161 KCLLELERFAEAVN 174 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555333333
No 218
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.60 E-value=0.013 Score=43.58 Aligned_cols=112 Identities=13% Similarity=-0.026 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....+.....+.+..++.+++..++...--+.|..+..-..-|..+...|++.+|+..++.+..-.|.++.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDEEIGMALKKVE 162 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~ 162 (227)
..+|+..-= .+-..++...++..+...+..+.
T Consensus 89 ~~~~D~~Wr-~~A~evle~~~d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 89 YALGDPSWR-RYADEVLESGADPDARALVRALL 120 (160)
T ss_pred HHcCChHHH-HHHHHHHhcCCChHHHHHHHHHH
Confidence 999998642 23344666665544444444433
No 219
>PRK10941 hypothetical protein; Provisional
Probab=97.56 E-value=0.0014 Score=53.25 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
...+.++=..+...++|+.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|+.+++..+...|+.+.+-.....+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 456677788899999999999999999999999999999999999999999999999999999999999876665544
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0021 Score=51.55 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM----LN--PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY 122 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 122 (227)
..+.-...+|...++.||-+.|..+|+..-+ ++ ........+.+.+|.-.++|..|...|.+++..+|.++-+.
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 3456778899999999999999999995433 22 22356777888899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+.|.|+..+|+..+|++.+..++.+.|..
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999985
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.0074 Score=46.09 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=105.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCH
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE-TNPDSAKGYKIRGMARARLGQW 135 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~ 135 (227)
.+....+.=|.+..+....+.++..|+.. -.+.+|......|++.+|...|++++. +..+++..+..++.+.+..+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 34444555688888888888889888754 466799999999999999999999875 5678889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 136 EEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 136 ~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..|...+++..+.+|.. +....++.++...|...++...++.....-+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 99999999999999875 3456888999999999989888877765544
No 222
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.49 E-value=0.0072 Score=57.45 Aligned_cols=128 Identities=13% Similarity=-0.033 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------AK 120 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 120 (227)
......|..++..|++++|...+.+++...+.. ..++..+|.++...|+++.|...+++++...... ..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 344456777777888888888888877744332 1345667777777888888888887777653321 13
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------h-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVASKLDYD--------E-EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
++..+|.++...|++..|...+.+++.+... . .....++.+....|++.++...+....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 5566777777888888888777777765211 1 112345556666677777766665543
No 223
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.48 E-value=0.0073 Score=57.40 Aligned_cols=130 Identities=13% Similarity=0.077 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-------
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPD------- 117 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------- 117 (227)
...+...|..+...|++++|...+.+++...... ..++.++|.+++..|++..|...+++++.+-..
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 3456778899999999999999999999754321 346778899999999999999999998876221
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----h--HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 118 -SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD----E--EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 118 -~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
....+..+|.++...|++++|...+.+++.+... . .....++.+....|++.++...+.....
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1234567899999999999999999999876332 1 2233577788889999999888866644
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0036 Score=51.36 Aligned_cols=103 Identities=16% Similarity=0.049 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHHHH
Q 041967 50 AANMTKLKAVDLIS-EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYKIR 125 (227)
Q Consensus 50 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l 125 (227)
..+.|...|...+. .++...|...|+.+++..|.+..+|......+...++.+.|...|++++..-|... ..|-.+
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 34678888888777 67777799999999999999999999999999999999999999999998876655 578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
...-...|+.+......+++....|.+
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888899999999999999999999886
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.40 E-value=0.0017 Score=54.29 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC------C-
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT--S----AILYAARAGVYVKLNKPNAAIRDAYVALETNPD------S- 118 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~- 118 (227)
..+..+|+.+...+.|+++++.|+.|++..-. + ..++..+|..+-+..++++|+-+..+|..+-.. +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 55666899999999999999999999986433 2 357889999999999999999999888766321 1
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ChH-----HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 119 ---AKGYKIRGMARARLGQWEEAANDLHVASKLDY--DEE-----IGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 119 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
..+++.++..+..+|..-+|.++++.+.++.- .|. ....++.++...|+.+.+...|+.+..
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23678899999999999999999999887632 232 234788899999999999888876653
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.39 E-value=0.0021 Score=47.13 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
.....+...+..+...|++++|+..+.+++..+|.+-.++..+-.+|...|++..|+..|++....
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345677788888999999999999999999999999999999999999999999999999887543
No 227
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.37 E-value=0.00034 Score=37.29 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPD 117 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 117 (227)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444443
No 228
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.36 E-value=0.0026 Score=44.22 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=66.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC----C-------cHHHHHHHHHHHHhCCCCHHHH
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLN----K-------PNAAIRDAYVALETNPDSAKGY 122 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~----~-------~~~A~~~~~~al~~~p~~~~~~ 122 (227)
++..++.+|++-+|++..+..+...+.+. .....-|.+++.+. + .-.++++|.++..+.|.....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46789999999999999999999887765 44555566664432 2 2347777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
+.+|.-+.....|++++...++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77777666666677777666666655
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.34 E-value=0.0017 Score=57.13 Aligned_cols=101 Identities=19% Similarity=0.058 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-HHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-KGYK 123 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~ 123 (227)
+.+-.++..|..+..+|+.++|++.|++++..... ..-+++.+|.+++-+.+|++|..++.+.++.+.-.. -..|
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 45667899999999999999999999998853322 345799999999999999999999999998654432 2445
Q ss_pred HHHHHHHHcCCH-------HHHHHHHHHHHhcC
Q 041967 124 IRGMARARLGQW-------EEAANDLHVASKLD 149 (227)
Q Consensus 124 ~la~~~~~~g~~-------~~A~~~~~~a~~~~ 149 (227)
..|.|+..+|+. ++|...|.++..+.
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 578999999999 78888888776554
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.34 E-value=0.022 Score=45.56 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC--------cHHHHHHHHHHHHhCCCCH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLNK--------PNAAIRDAYVALETNPDSA 119 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~ 119 (227)
-.++...+-.+++.++|++|+...++-+.++|+++ .+++.+|.+++..-+ ...|+..|+..|...|+..
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 46788999999999999999999999999999864 478888988776422 4568999999999999863
Q ss_pred H---------------H--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhhhhHHHHHHH
Q 041967 120 K---------------G--YKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKKVEPNARRIQEHRRK 174 (227)
Q Consensus 120 ~---------------~--~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~ 174 (227)
- + =...|..|.+.|.+-.|+..++.+++..|+. +....+.+.+..+|-..+|...
T Consensus 151 Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 151 YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 1 1 1225778999999999999999999998774 2234555666666655555443
No 231
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0018 Score=53.79 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP---T----------------SAILYAARAGVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~----------------~~~~~~~~g~~~~~~~~~~~A~~~~~~ 110 (227)
..+.....|+..+++++|..|..-|.+++..-- . -...+.+.+.+-++.+.+..|+.....
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 446677889999999999999999999886311 1 123566788999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
++..++...+++++++..+....+++.|.+++..+....|.+..
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 99999999999999999999999999999999999999999833
No 232
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.022 Score=44.96 Aligned_cols=132 Identities=18% Similarity=0.122 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLN-----PT-SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---- 119 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---- 119 (227)
.++.+..-|+.+--.++|..|=..|.++-... .+ .+..|..-+.|| +..++.+|+.+++++|.+..+..
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHH
Confidence 45666667777777789999988888887642 12 355777777787 55599999999999999876543
Q ss_pred --HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCChHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 120 --KGYKIRGMARARL-GQWEEAANDLHVASKLDYDEEIG-------MALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 120 --~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
+.++.+|.+|..- .+++.|+.+|+++-.....+++. .........++++..+...|++..+..
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566789998755 99999999999999887765332 233444566777777777776665443
No 233
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.22 E-value=0.00067 Score=36.12 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS 84 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 84 (227)
++++..|.++...|++++|+..|++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999974
No 234
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.20 E-value=0.0019 Score=52.87 Aligned_cols=79 Identities=22% Similarity=0.163 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.+..-...+....+.|+.++|..+|..|+.++|+++.++...|...-..++.-+|-++|-+|+.+.|.+.+++.+++..
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444555666677889999999999999999999999999999988888888899999999999999999888887654
No 235
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.00054 Score=59.12 Aligned_cols=84 Identities=10% Similarity=-0.035 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM-L--------NP---------TSAILYAARAGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 111 (227)
....|.++|.++++.|.|.-+..+|.+|+. . .| .+..++||.|..|+..|++-.|.++|..+
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 345678999999999999999999999995 1 11 13678999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcC
Q 041967 112 LETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 112 l~~~p~~~~~~~~la~~~~~~g 133 (227)
+.....+|..|.++|.|.....
T Consensus 362 v~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999976544
No 236
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.18 E-value=0.007 Score=55.71 Aligned_cols=116 Identities=19% Similarity=0.077 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
+..-+....|..+++.|.+++|+.+++..-...+++-..+-.+-.||..++++++|...|++++..+|. .+..+.+-.+
T Consensus 41 n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFma 119 (932)
T KOG2053|consen 41 NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMA 119 (932)
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHH
Confidence 445566778899999999999998888777788888888999999999999999999999999999999 8888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHhh
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE--EIGMALKKVEPNA 165 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~l~~~~~~~ 165 (227)
|.+-+.|..-.+.--+..+..|.+ -.|..++-+....
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 999999988777777777788886 4465555554433
No 237
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.18 E-value=0.0034 Score=37.76 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+|.+|..+.++|+|..|..++..+++++|+|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 45666777777777777777777777777776
No 238
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.18 E-value=0.0031 Score=37.97 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
++++.+|..++++|+|..|..+++.+++++|+|..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 356778888888888888888888888888888776555443
No 239
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.053 Score=41.66 Aligned_cols=114 Identities=15% Similarity=0.064 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 041967 69 DAIGQLTEAIMLNPTSAI---LYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDL 142 (227)
Q Consensus 69 ~A~~~~~~al~~~p~~~~---~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 142 (227)
+.+....+....+|.+.. +-..++..+...+++++|+..++.++....+. .-+-+++|.++..+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444444455544432 34457888899999999999999999664433 246778999999999999999887
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 143 HVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 143 ~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
.....-.-........+.++...|+-.+|+..|.+.....
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 7533221112335577899999999999999998876553
No 240
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.14 E-value=0.00017 Score=59.37 Aligned_cols=88 Identities=19% Similarity=0.038 Sum_probs=75.3
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHH
Q 041967 93 GVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEH 171 (227)
Q Consensus 93 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a 171 (227)
.-.+..|.++.|+..|..+|.++|.....|-.++.++..++....|+..|..++.++|+. .....-+.....+|+|.++
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 334467889999999999999999999999999999999999999999999999999997 4455666666778889888
Q ss_pred HHHHHHHHH
Q 041967 172 RRKYERLRK 180 (227)
Q Consensus 172 ~~~~~~~~~ 180 (227)
...+....+
T Consensus 202 a~dl~~a~k 210 (377)
T KOG1308|consen 202 AHDLALACK 210 (377)
T ss_pred HHHHHHHHh
Confidence 888866553
No 241
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.14 E-value=0.0007 Score=58.18 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR 166 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~ 166 (227)
+-+.+...+.-+.|+.|+..|.+||+++|++...+-+++.++...+++..|+..+.+|++.+|.. .....-+......+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34456777888999999999999999999999999999999999999999999999999999986 44445556667778
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 041967 167 RIQEHRRKYERLRKEREL 184 (227)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~ 184 (227)
.+.+|...++...+..+.
T Consensus 87 ~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHHHHHHhhhcCcC
Confidence 888888888777666554
No 242
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.12 E-value=0.002 Score=56.92 Aligned_cols=98 Identities=19% Similarity=0.082 Sum_probs=86.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAI-LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 135 (227)
.|..+...|+...|++++..|+...|.... .+.++|.+..+.|-...|-..+.+++.++-..+-.++.+|.++..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 445555679999999999999999887543 5889999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHH
Q 041967 136 EEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 136 ~~A~~~~~~a~~~~p~~~~ 154 (227)
+.|++.|..|+..+|.+..
T Consensus 693 ~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHHHHHHHHhcCCCChh
Confidence 9999999999999999844
No 243
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.12 E-value=0.011 Score=39.80 Aligned_cols=72 Identities=22% Similarity=0.135 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 104 AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 104 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
.+..++..+..+|++..+.+.+|..+...|++++|+..+..+++.+++. .....+-.+...+|.-......|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 4556677777777777777777777777777777777777777777653 33445555555555543333333
No 244
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.12 Score=46.60 Aligned_cols=99 Identities=17% Similarity=-0.002 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..+.+.|..+|+..+|..+++.|...+...|++ +-...+++.||+...+.+.|.++++.|-+.+|.++-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 467888899999999999999999999988775 44677889999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967 126 GMARARLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p 150 (227)
-.+...-|.-++|+.+..+.....-
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhc
Confidence 8888888888999988887766543
No 245
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.05 Score=43.78 Aligned_cols=123 Identities=19% Similarity=0.136 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL----NKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.+..-..-.++++..+++-|...+.+....+.+ ..+..+|.++... +.+..|.-+|+..-...|..+....-.+
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A 214 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA 214 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence 344445556667777777777777777666543 3444455555442 3466777777777766667777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
.|+..+|+|++|...++.++.-++.+ +...++--+....|.-.++..++
T Consensus 215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 77777777777777777777777776 55555555555666665555555
No 246
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.07 E-value=0.0035 Score=51.39 Aligned_cols=69 Identities=20% Similarity=0.018 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967 89 AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA 157 (227)
Q Consensus 89 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~ 157 (227)
.+.+.-..+.|+.++|...|+.|+.+.|+++.++..+|......++.-+|-.+|-+|+.+.|.+ ++..+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3445555678999999999999999999999999999999999999999999999999999998 54433
No 247
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.07 E-value=0.0095 Score=40.12 Aligned_cols=66 Identities=18% Similarity=0.061 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCH
Q 041967 70 AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--AKGYKIRGMARARLGQW 135 (227)
Q Consensus 70 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~ 135 (227)
.+..+++.+..+|++..+.+.+|..+...|+++.|+..+-.++..++++ ..+.-.+-.++..+|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4567888999999999999999999999999999999999999999887 34444444445555543
No 248
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.025 Score=49.19 Aligned_cols=89 Identities=9% Similarity=-0.020 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 041967 68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ-WEEAANDLHVAS 146 (227)
Q Consensus 68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~ 146 (227)
..-...|+.|+...+.+...|.+......+.+.+.+.-..|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3445679999999999999999988777777789999999999999999999999999998888887 999999999999
Q ss_pred hcCCCh-HHHH
Q 041967 147 KLDYDE-EIGM 156 (227)
Q Consensus 147 ~~~p~~-~~~~ 156 (227)
+.+|+. ..|.
T Consensus 168 R~npdsp~Lw~ 178 (568)
T KOG2396|consen 168 RFNPDSPKLWK 178 (568)
T ss_pred hcCCCChHHHH
Confidence 999998 5554
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.023 Score=44.89 Aligned_cols=102 Identities=17% Similarity=0.020 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----
Q 041967 51 ANMTKLKAVDLISE-GKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---- 119 (227)
Q Consensus 51 ~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---- 119 (227)
+..++.+|..|-.. .++++||.+|+++-+..... .-++.-.+..-...++|.+|+..|+++....-+|+
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 44566778777776 78999999999998865442 12444556666678999999999999988766654
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 120 ---KGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 120 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
..++.-|.|+.-..+.-.+...+++...++|..
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 355667889998899999999999999999985
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.01 E-value=0.0017 Score=35.65 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=12.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAI 78 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al 78 (227)
+..+|..+...|+|++|+.+|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 251
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.01 E-value=0.0011 Score=34.10 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNP 116 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 116 (227)
++.+|.++...++++.|+..+++++.++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444444444444444444444433
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.01 E-value=0.0015 Score=35.88 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
|.++|.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666633
No 253
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.00 E-value=0.043 Score=53.15 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.....|...|..++++.+-+.|...+.+|+.--|. +.......|...++.|+.+.+...|+-.+.-+|...+.|..+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 35678999999999999999999999999999888 6678888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 041967 127 MARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
..-...|+.+.....|++++.+.
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999886
No 254
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.99 E-value=0.022 Score=40.18 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=72.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-------
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPT------------SAILYAARAGVYVKLNKPNAAIRDAYVALET------- 114 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------- 114 (227)
....|...+..|-|++|...+.++.+...+ ++.++..++.++..+|+|++++...+.++..
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 345667778889999999999999986433 3567788899999999999988888888753
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 115 NPDS----AKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 115 ~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
+.+. ..+.++.|..+..+|..++|+..|+.+-++
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3443 346677899999999999999999887653
No 255
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.85 E-value=0.0021 Score=50.47 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=28.8
Q ss_pred cCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 98 LNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 98 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.++.+.|.+.|.+++.+-|.+...|+++|......|+++.|.+.|.+.++++|.+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3444555555555555555555555555555555555555555555555555543
No 256
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.84 E-value=0.0021 Score=33.00 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
.+++.+|.++..+|+++.|..+|.+++.+.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999999875
No 257
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.19 Score=40.55 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=105.2
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HH
Q 041967 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWE-EA 138 (227)
Q Consensus 61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 138 (227)
+.+...-..|+.+-..+|.++|.+...|..+=.++..++ +..+-+.++..++.-+|.|-.+|.-+-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 334456688999999999999999999888878877765 7889999999999999999999999999999999988 78
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 139 ANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 139 ~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
+.....++..+..| -+|.....+....+.++.-......+...+
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 88999999999888 889999999999999888888777766544
No 258
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.80 E-value=0.029 Score=47.95 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=74.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------C----------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPT--------S----------AILYAARAGVYVKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 115 (227)
-..-|-.++++++|..|...|..+|++..+ . ..+-..+..||+++++.+-|+....+.|-++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 344556667777777777777777765322 1 2355678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967 116 PDSAKGYKIRGMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 116 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 147 (227)
|.+..-+.+.|-|...+..|.+|.+.+--+.-
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877655443
No 259
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.74 E-value=0.078 Score=47.27 Aligned_cols=124 Identities=15% Similarity=0.058 Sum_probs=95.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTS--AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 132 (227)
...+.....+|+..+|..++..++...|.. -.++..+|.++.+.|.-..|--.+.-|+.--|....-++.+|.++..+
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml 296 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML 296 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence 333444456799999999999999987653 347888999999999999988888888887777777799999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 133 GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
|++.....+|..+.+.+|.. ........+..+..+...+..+..+.
T Consensus 297 ~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~ 343 (886)
T KOG4507|consen 297 GEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRS 343 (886)
T ss_pred hhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 44444444444555555444444333
No 260
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.11 Score=41.86 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 135 (227)
.+++|.-.|++.-...|-.+..+...+.|++.+++|++|...++.++..++.++..+.++-.+-..+|..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444433334444444444444444444444444444444444444444444444444443
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.22 Score=39.78 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLN-----PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------AK 120 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 120 (227)
.++-..|..+-....|.++..+|++|..++ |+.+..-..++-=.....+++.|++.|++++.+-... .+
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 344445555555566777777777777652 3333333334444456667778888888776553222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCChHH-HHHHHHH--HHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVASKL----DYDEEI-GMALKKV--EPNARRIQEHRRKYERLRKERELKNFERERQR 193 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~~~~-~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
.+-..+.++.+...+.+|-..+.+-.-+ +..+.. ...++.+ +....++..+...++...........+..+..
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 4445667777888888777766653322 222222 2233333 33445677777777554322222122212223
Q ss_pred HHh------hhcHHHHhhhhhhhhhhh
Q 041967 194 KQA------GADREALSGLRDGMASDF 214 (227)
Q Consensus 194 ~~~------~~~~~~~~~l~~~~~~~~ 214 (227)
++. .+..++..++..|.++.+
T Consensus 232 enLL~ayd~gD~E~~~kvl~sp~~r~M 258 (308)
T KOG1585|consen 232 ENLLTAYDEGDIEEIKKVLSSPTVRNM 258 (308)
T ss_pred HHHHHHhccCCHHHHHHHHcChHhhhh
Confidence 332 334566677776665543
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.18 Score=40.35 Aligned_cols=128 Identities=17% Similarity=0.047 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CCCH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETN-----PDSA 119 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 119 (227)
+..+...++.+...++|++|..++.+|++-..++ +-+|-..|.....+..+.++...|+++..+. |+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4455555666666789999999999999654433 3467777888888899999999999998875 3333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI-------GMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
..-...+--....-++++|++.|++++.+.-.++. ....+.++.+...+.++-..+.+.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 33333333445667799999999999988654321 234555666777777766666433
No 263
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.57 E-value=0.19 Score=37.01 Aligned_cols=103 Identities=14% Similarity=-0.004 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...+.......+...+..++..++...--+.|..+..-..-|..+...|++.+|+..++.+..-.+..+.+.-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 45566666777779999999999999888999999999999999999999999999999999999899988899999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChHH
Q 041967 131 RLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
.+|+..-= .+-..++..+++.+.
T Consensus 90 al~Dp~Wr-~~A~~~le~~~~~~a 112 (153)
T TIGR02561 90 AKGDAEWH-VHADEVLARDADADA 112 (153)
T ss_pred hcCChHHH-HHHHHHHHhCCCHhH
Confidence 99998642 233344555444433
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.18 Score=41.23 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
..-+..+.-....|++..|...|..++...|.+..+...++.||...|+.+.|...+...-.-
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 345556677778999999999999999999999999999999999999999988777654333
No 265
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.54 E-value=0.098 Score=37.80 Aligned_cols=69 Identities=12% Similarity=0.049 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHcCC---cHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 84 SAILYAARAGVYVKLNK---PNAAIRDAYVALE-TNPDS-AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+....+++++++.+..+ ..+.+..++..++ -.|.. -...|.++..+.++++|+.++.++..+++.+|+|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 35678888888887654 6678888988886 44443 4688889999999999999999999999999988
No 266
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.032 Score=45.02 Aligned_cols=69 Identities=23% Similarity=0.224 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGM 156 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 156 (227)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..+...|++....
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 334444555666677777777777777777776666667777777777777777777666666664433
No 267
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.41 E-value=0.006 Score=47.94 Aligned_cols=61 Identities=23% Similarity=0.161 Sum_probs=56.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA 119 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 119 (227)
......++.+.|.+.|.+++.+.|....-|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999999999999999999999999999999999999999999764
No 268
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.33 E-value=0.34 Score=40.59 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967 72 GQLTEAIMLNPTSAILYAARAGVYVKLNK------------PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA 139 (227)
Q Consensus 72 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 139 (227)
..|++.+..+|++..+|..+....-..-. .+.-+..+++|++.+|++...+..+-.+.....+.+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788888999999988888766655432 456788899999999999988888888888888888888
Q ss_pred HHHHHHHhcCCCh-HHHH-HHHHHHHhhh--hHHHHHHHHHHHHHH
Q 041967 140 NDLHVASKLDYDE-EIGM-ALKKVEPNAR--RIQEHRRKYERLRKE 181 (227)
Q Consensus 140 ~~~~~a~~~~p~~-~~~~-~l~~~~~~~~--~~~~a~~~~~~~~~~ 181 (227)
+.+++++..+|++ ..|. .+.....+.. .+...+..|.++...
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 8999999999987 7776 3333333222 345556666555433
No 269
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.33 E-value=0.063 Score=42.28 Aligned_cols=93 Identities=25% Similarity=0.189 Sum_probs=69.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHh----CCC-C--HHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHhCCC------CH
Q 041967 60 DLISEGKLEDAIGQLTEAIML----NPT-S--AILYAARAGVYVKLNKPN-------AAIRDAYVALETNPD------SA 119 (227)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al~~----~p~-~--~~~~~~~g~~~~~~~~~~-------~A~~~~~~al~~~p~------~~ 119 (227)
.+.....+++|++.|.-|+-. .+. . +..+..+|++|...|+.+ .|+..|.+++..... ..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 444456789999999888852 212 2 567888899999999844 566667766655422 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
...+.+|.+..++|++++|.++|.+++......
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999999876544
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.22 E-value=0.11 Score=39.59 Aligned_cols=101 Identities=13% Similarity=-0.057 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CCHH----
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNP--DSAK---- 120 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~---- 120 (227)
.-..+..+|..+.+.|+++.|++.|.++....... ...++++..+.+..+++..+..+..++-.+-. .++.
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34788999999999999999999999988865432 45778888888899999999999988865532 2232
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 150 (227)
.....|..+...++|..|...|..+.....
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 344457888889999999988887765554
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.18 E-value=0.1 Score=45.69 Aligned_cols=82 Identities=16% Similarity=0.022 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhCCC-------------------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CH
Q 041967 67 LEDAIGQLTEAIMLNPT-------------------------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SA 119 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~-------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~ 119 (227)
..+|..+|+++++.... ...+...+|.|..++|..++|+..+...++.+|. +.
T Consensus 216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l 295 (539)
T PF04184_consen 216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNL 295 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchh
Confidence 57788888888753211 1346678999999999999999999999998875 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
.++.++..++..++.|.++...+.+.-.+
T Consensus 296 ~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 296 NIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 79999999999999999999988886544
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.16 E-value=0.37 Score=40.32 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-------
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD------- 117 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------- 117 (227)
..+..+...+..+.+.|.++.|...+.++...++. .+.+.+..+......|+..+|+..++..+.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 46788999999999999999999999998886532 4678888999999999999999999888871100
Q ss_pred ---------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967 118 ---------------------------SAKGYKIRGMARARL------GQWEEAANDLHVASKLDYDE-EIGMALKKVE 162 (227)
Q Consensus 118 ---------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~ 162 (227)
..+++..+|.-.... +.++++...|..++.++|.. ..+..++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 123666777777777 88889999999999999876 5454444443
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.09 E-value=0.22 Score=42.43 Aligned_cols=100 Identities=8% Similarity=-0.045 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCcHHHHHHHHH-HHHhCCCCHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIML----NPTSAILYAARAGVYVK---LNKPNAAIRDAYV-ALETNPDSAKGYKI 124 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~g~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~ 124 (227)
...++-..|...++|+.-+.+.+..-.+ -+..+...+.+|.++-+ .|+.++|+..+.. +....+.+++.+..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3444555566677788877777665444 33456677788888888 7899999999988 55556677888888
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHHhcCCCh
Q 041967 125 RGMARARL---------GQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 125 la~~~~~~---------g~~~~A~~~~~~a~~~~p~~ 152 (227)
+|.+|..+ ...+.|+.+|.++..++|+.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 88876543 24678999999999998764
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.09 E-value=0.1 Score=43.95 Aligned_cols=98 Identities=14% Similarity=-0.054 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----S------AILYAARAGVYVKLNKPNAAIRDAYVALETN------ 115 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------ 115 (227)
..+..+|..+-..+|+++|+.+..+|.++-.. + ..+++.++..+...|..-.|.++++.+.++-
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 46778899999999999999999999886432 1 3467889999999999999999999987653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 116 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
|........+|.+|...|+.+.|..-|+.|..+-
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3445677789999999999999999999988764
No 275
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.15 Score=45.92 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH-HHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI-GMAL 158 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~l 158 (227)
..+.+-|.-+++..+|..+++.|..-+..-|.+ .+....++.||..+.+.+.|+++++.|-+.+|.+.. ...+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 456778888999999999999999999887754 467778999999999999999999999999999844 3455
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 159 KKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
......-++..+|.............
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 56666677778888877666544333
No 276
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.92 E-value=0.055 Score=36.64 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=38.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTS---------AILYAARAGVYVKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 115 (227)
...++.|+|..|++.+.+.++..... ..++.++|.++...|++++|+..++.++.+-
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567788888877777777643221 3456667777777777777777777776653
No 277
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.89 E-value=0.13 Score=37.23 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 50 AANMTKLKAVDLISEGK---LEDAIGQLTEAIM-LNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~-~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
..+..|+.+..+.+..+ -++.+.+++..++ -.|.. -.+.|.++..+++.++|++++.+++..+..+|+|..+.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34677888888888764 5778999999986 44543 4578889999999999999999999999999999876544
Q ss_pred H
Q 041967 125 R 125 (227)
Q Consensus 125 l 125 (227)
.
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 3
No 278
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.89 E-value=0.058 Score=49.32 Aligned_cols=104 Identities=27% Similarity=0.309 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--CCcHHHHHHHHHHHHhCCCCHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----AILYAARAGVYVKL--NKPNAAIRDAYVALETNPDSAKGY 122 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~ 122 (227)
..+......|+.++..++|..|.--|..++.+-|++ .....+.+.|++.. ++|..++..+..++...|....++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 456778899999999999999988899999888853 55677888888775 689999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+..+.+|...+.++-|++.+.-.....|.+
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999899999998
No 279
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.88 E-value=0.99 Score=40.97 Aligned_cols=132 Identities=14% Similarity=0.005 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CCHHHHHH--
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP--DSAKGYKI-- 124 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~-- 124 (227)
.....|...+...-.-|-++.....|++.|++.--.|....|.|..+-...-|+++.+.|++.|.+.+ .-.+.|..
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 34677888888888899999999999999999888899999999999999999999999999999864 33344433
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 125 -RGMARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 125 -la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
.......--..+.|...|++|+...|.. .+....+......|....+..-|+++..
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 2333333346889999999999999964 2344667777888998888888877643
No 280
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.80 E-value=0.62 Score=42.22 Aligned_cols=63 Identities=21% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLN-PTS---AILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
..|...|..|-..|+.+.|...|++++... +.- +..|++-|...+...+++.|+...+.|...
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 345566666666666666666666665532 211 345555555555555555555555555443
No 281
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.69 E-value=0.031 Score=31.10 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
.++.++|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555666666666666666666665544
No 282
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.12 Score=41.79 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.....=..+...++|+.|+.+.++.+.++|.++.-+..+|.+|.+.|.+..|+++++..+...|+.+.+-...+..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445556778889999999999999999999999999999999999999999999999999999998776555443
No 283
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.58 E-value=0.55 Score=40.08 Aligned_cols=133 Identities=17% Similarity=0.066 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHhCC
Q 041967 50 AANMTKLKAVDLIS---EGKLEDAIGQLTEAIM-LNPTSAILYAARAGVYVKL---------NKPNAAIRDAYVALETNP 116 (227)
Q Consensus 50 ~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p 116 (227)
.....+..|..+-+ .|+.++|+..+..++. ..+.+++.+...|.+|-.. ...++|+..|.++..++|
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 44556677777777 8999999999999554 5567889999999988542 237789999999999997
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------h---cCCChHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 117 DSAKGYKIRGMARARLGQWEEAANDLHVAS--------K---LDYDEEIGM--ALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 117 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~--------~---~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+.-. -++++.++...|........+++.. + ..+...-|. .+.++..-.|+.+.+...++++.+..+
T Consensus 258 ~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 258 DYYS-GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccc-hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 5543 3455666666664332222222211 1 112223343 556666667788888877777765543
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.42 E-value=0.05 Score=30.18 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML 80 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 80 (227)
+..+..+|..+...|+|++|+.++.+++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 567899999999999999999999999975
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.41 E-value=0.32 Score=40.75 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C-C-------------------------C------CHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML--N-P-------------------------T------SAILYAARAGVY 95 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~-p-------------------------~------~~~~~~~~g~~~ 95 (227)
.+...+..+..+...|+..+|+..+...+.. . + . .+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999888871 1 1 0 134555566666
Q ss_pred HHc------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhcCCC
Q 041967 96 VKL------NKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW-----------------EEAANDLHVASKLDYD 151 (227)
Q Consensus 96 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~~~p~ 151 (227)
... +.++.++..|..++.++|.+.++|+.+|..+...-+. ..|+..|-+++..++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 566 7888999999999999999999999998877655322 2377777777777765
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.32 E-value=0.99 Score=42.23 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVA----------LETNPD----------SAKGYKIRGMARARLGQWEEAANDLHV 144 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~ 144 (227)
-..|++.|.-+...++.+.|+++|+++ +.-+|. ++..|-++|.-+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 457888999998999999999999874 333443 345788899999999999999999988
Q ss_pred HHhcCC---------------------Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 145 ASKLDY---------------------DE-EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 145 a~~~~p---------------------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
|-.... .| .+...+++.+.+.|+..+|...|.++.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 765431 23 345688999999999999999996664
No 287
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.16 E-value=0.063 Score=44.26 Aligned_cols=84 Identities=8% Similarity=0.001 Sum_probs=63.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 73 QLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI-RGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 73 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
.|.++....|.++..|...+..-.+.|-+.+.-..|.+++..+|.+.+.|.. .+.-++..++++.+...|.++++++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4555556667778888777777777777888888888888888888888777 455577788888888888888888888
Q ss_pred h-HHHH
Q 041967 152 E-EIGM 156 (227)
Q Consensus 152 ~-~~~~ 156 (227)
+ .+|.
T Consensus 175 ~p~iw~ 180 (435)
T COG5191 175 SPRIWI 180 (435)
T ss_pred CchHHH
Confidence 7 5554
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.12 E-value=1.3 Score=36.20 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHcCCcH---HHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEG-KLEDAIGQLTEAIML----NPTS----------AILYAARAGVYVKLNKPN---AAIRDAYV 110 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p~~----------~~~~~~~g~~~~~~~~~~---~A~~~~~~ 110 (227)
.-+..+++.|...+..+ +++.|+..+++++++ .+.. ..++..++.+|+..+.++ +|....+.
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~ 112 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 35677888888888888 899998888888876 2211 346677788888877644 45555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 150 (227)
+-.-.|+.+..++..-.++...++.+.+...+.+++.--+
T Consensus 113 l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 113 LESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 6666777777775555555557888888888888877654
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.07 E-value=0.35 Score=31.48 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCcHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAA---RAGVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~g~~~~~~~~~~~A~~~~~~ 110 (227)
+.+......|..++...+.++|+....+++...++.+..+.. +..+|...|.|.+++.+..+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888888888887776654444 44556667777777666543
No 290
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.00 E-value=0.72 Score=32.15 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=48.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCh
Q 041967 91 RAGVYVKLNKPNAAIRDAYVALETNPDSAK---GYKIRGMARARLGQ-----------WEEAANDLHVASKLDYDE 152 (227)
Q Consensus 91 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~-----------~~~A~~~~~~a~~~~p~~ 152 (227)
++.-++..|++-+|+...+..+...+.... .+..-|.++..+.. .-.++.+|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 567788999999999999999999887764 44445666655442 346889999999998876
No 291
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.96 E-value=1 Score=39.18 Aligned_cols=130 Identities=12% Similarity=-0.002 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH---------hCC
Q 041967 49 DAANMTKLKAVDLISEGK-LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIR--DAYVALE---------TNP 116 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~--~~~~al~---------~~p 116 (227)
.-+..++..|..++..|. -++|+.++..++...|.+..+.... +.+-...|..|+. .+.+.+. +.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 346677888899999987 7889999999999888875322211 1111111222221 1122222 122
Q ss_pred C---CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 117 D---SAKGYKIR--GMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 117 ~---~~~~~~~l--a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
- +...-..+ |.-++..|+|..+.-+..=..++.|...+...+|-+......+.+|...+..+--
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 2 22333333 4456788888888888888888888667778888888888888888877766543
No 292
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.96 E-value=1.7 Score=35.56 Aligned_cols=112 Identities=13% Similarity=-0.051 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CcHHHHHHHHHHHHhCCCC
Q 041967 51 ANMTKLKAVDLIS----EGKLEDAIGQLTEAIMLNPTS-AILYAARAGVYVKLN-------KPNAAIRDAYVALETNPDS 118 (227)
Q Consensus 51 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~-------~~~~A~~~~~~al~~~p~~ 118 (227)
+...+.+|..+.. ..++.+|...|.++....-.. ..+.+.+|.+|..-. +...|+..|.++-... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 4567777777776 448888888888888764322 234777777776541 2336888888877765 7
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 041967 119 AKGYKIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPNAR 166 (227)
Q Consensus 119 ~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~ 166 (227)
+.+.+.+|.+|.. ..++..|..+|.++..... ......++ +....|
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcC
Confidence 7888888877754 3378888899998888876 44444555 444444
No 293
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.92 E-value=1 Score=38.38 Aligned_cols=108 Identities=17% Similarity=0.024 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--------------CCC------------
Q 041967 64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET--------------NPD------------ 117 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------~p~------------ 117 (227)
..|.+.-+.. +..+|...+.+..++.++..+|++..|...+++|+-. ++.
T Consensus 23 ~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e 98 (360)
T PF04910_consen 23 SHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE 98 (360)
T ss_pred ccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcccc
Confidence 3455544433 4668888899999999999999988888888877521 111
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-h--HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 118 SA---KGYKIRGMARARLGQWEEAANDLHVASKLDYD-E--EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 118 ~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~--~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
|. .+.++....+.+.|-+..|.++++-.+.++|. | .+...+.-...+.+++.-...-+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~ 162 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS 162 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Confidence 11 26777788889999999999999999999998 4 23334444444555554333333
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.82 E-value=0.35 Score=42.38 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK-PNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
...|........+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|.+.|.++++.+|+++..|.-.
T Consensus 105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 45566666666666779999999999999999999999988888888875 9999999999999999999866543
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.81 E-value=0.49 Score=38.70 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 146 (227)
|..=+....++++. ....++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|.+..
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44444444444432 1356778888999999999999999999999999999999999999999999999999999887
Q ss_pred hc
Q 041967 147 KL 148 (227)
Q Consensus 147 ~~ 148 (227)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 73
No 296
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=1.5 Score=38.64 Aligned_cols=123 Identities=19% Similarity=0.113 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--------
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-S--AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-------- 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------- 118 (227)
.+..++-+|.....-+.|+.|...|..|.++... + +.+..|+|..|+..++-+.--+.++ .+.|.|
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHH
Confidence 5678889999999999999999999999986543 2 3466788999999887555333333 344543
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHhhhhHHHHHHHH
Q 041967 119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI-------GMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~~~l~~~~~~~~~~~~a~~~~ 175 (227)
..++|..|...+..+++.+|...+.+.++.....+. ...++.+....|+..++..-.
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 237888899999999999999999999998643221 346677777777776665533
No 297
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.48 Score=39.73 Aligned_cols=92 Identities=13% Similarity=-0.030 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHH---HHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIML-NPTSAILYA---ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~---~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
++.---..+|.+|+...-...+.+.+-. +|+-|-+-| -++-++...|-|..|....++++++||.+.-+...++.+
T Consensus 139 a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV 218 (491)
T KOG2610|consen 139 AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHV 218 (491)
T ss_pred hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH
Confidence 3333445566666666666666666655 555433222 234445556777777777777777777776666666666
Q ss_pred HHHcCCHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHV 144 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~ 144 (227)
+...|+++++.+...+
T Consensus 219 lem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 219 LEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHhcchhhhHHHHHHh
Confidence 6666766666665543
No 298
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.42 E-value=0.19 Score=40.66 Aligned_cols=62 Identities=15% Similarity=-0.043 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 70 AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 70 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
|..+|.+|+.+.|.+...|..+|.++...|+.-.|+-+|-+++....-++.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998776678889998888877
No 299
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.41 E-value=0.1 Score=43.05 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAAR-AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
....|...+....+.|-|.+-...|.+++..+|.+.+.|..- +.-+...++++.+...|.++++++|+++..|+..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 467788888888888899999999999999999999988763 3344567899999999999999999999876653
No 300
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.77 Score=39.30 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=79.3
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-C---HH
Q 041967 63 SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN--KPNAAIRDAYVALETNPDSAKGYKIRGMARARLG-Q---WE 136 (227)
Q Consensus 63 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~---~~ 136 (227)
+..-++.-+.+...++..+|++..+|+-+..++.+.+ ++..-++.++++++.+|.|-.+|..+-.+..... . ..
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 3346778888999999999999999999999999876 4789999999999999999877666544443333 2 56
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967 137 EAANDLHVASKLDYDE-EIGMALKKVEP 163 (227)
Q Consensus 137 ~A~~~~~~a~~~~p~~-~~~~~l~~~~~ 163 (227)
+-+.+..+++.-++.| .+|..-..+..
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 6788888999989998 77765544443
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.35 E-value=0.85 Score=38.90 Aligned_cols=107 Identities=15% Similarity=-0.083 Sum_probs=85.1
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-C----C
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-SAI-LYAARAGVYVKLNKPNAAIRDAYVALETNP-D----S 118 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~----~ 118 (227)
+++.-..+++.....+.++|.|..|++..+-.+.++|. ++. +++.+-....+.++++--+..++....... . -
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 44556788899999999999999999999999999999 665 444455555667888888888877655322 1 3
Q ss_pred HHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhcCCCh
Q 041967 119 AKGYKIRGMARARLGQW---------------EEAANDLHVASKLDYDE 152 (227)
Q Consensus 119 ~~~~~~la~~~~~~g~~---------------~~A~~~~~~a~~~~p~~ 152 (227)
|..-+..+.+++.+++- +.|...+++|+...|.-
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 45778889999999998 89999999999999864
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.35 E-value=1.3 Score=33.78 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
..++..+|..|++.|+++.|++.|.++....... ...++.+-.+....+++.....++.++-.+-..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999987765333 357788888899999999999998988777443
No 303
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.17 E-value=2.5 Score=36.29 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967 65 GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116 (227)
Q Consensus 65 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 116 (227)
.+...|.....+++++.|+...+-..-+..+++.|+..++-..++.+-+.+|
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 4566666666666666666655555555666666666666666666555544
No 304
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.03 E-value=0.54 Score=40.87 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAY 109 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 109 (227)
.-+..-|..++..|+|.++.-+-.=..+..| ++.+|..+|.|.+..++|.+|-.++.
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555666666666666666555666666 56666666666666666666666653
No 305
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.02 E-value=0.94 Score=35.65 Aligned_cols=78 Identities=18% Similarity=0.020 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967 49 DAANMTKLKAVDLISEGK-------LEDAIGQLTEAIMLNP--T----SAILYAARAGVYVKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p--~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 115 (227)
..+..+..+|..+-..|+ +..|+..|.+++.... . ...+.+.+|.++++.|++++|+.+|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 356677788888888887 4667777777776432 2 25688899999999999999999999999775
Q ss_pred CCCH-HHHHHHH
Q 041967 116 PDSA-KGYKIRG 126 (227)
Q Consensus 116 p~~~-~~~~~la 126 (227)
-... ..+..+|
T Consensus 196 ~~s~~~~l~~~A 207 (214)
T PF09986_consen 196 KASKEPKLKDMA 207 (214)
T ss_pred CCCCcHHHHHHH
Confidence 4333 2444443
No 306
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.98 E-value=1.1 Score=39.94 Aligned_cols=66 Identities=5% Similarity=-0.084 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
++.....|+.+-..+-.+ .+++....|++.+...|.++.+|.......+..++|+.....|.+++.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334455555554444333 566666666666666666666666666666666666666666655553
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.97 E-value=1.4 Score=39.86 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHh
Q 041967 50 AANMTKLKAVDLISE-----GKLEDAIGQLTEAIML-----NPTSAILYAARAGVYVKLN-----KPNAAIRDAYVALET 114 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~ 114 (227)
...+....|.+++.- +|.+.|+.+|..+... .-..+.+.+.+|.+|.+.. +...|+..|.++-.+
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 344556666666654 5788888888887661 0114456777888887743 556688888777766
Q ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 041967 115 NPDSAKGYKIRGMARARLG---QWEEAANDLHVASKLD 149 (227)
Q Consensus 115 ~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~ 149 (227)
.++.+.+.+|.++..-. ++..|..+|..|....
T Consensus 323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 46667777888776655 5667888888777665
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.83 E-value=3.4 Score=37.38 Aligned_cols=93 Identities=12% Similarity=-0.105 Sum_probs=76.1
Q ss_pred HHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 54 TKLKAVDLISEG-----KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 54 ~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
.+.+|..|++.. ++..|+.+|.++-+.. ++.+.+.+|.++.... ++..|..+|..|... .+..+.+++
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~l 366 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRL 366 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHH
Confidence 556788888743 7889999999998775 5678888999998766 578999999998876 578899999
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHhcCC
Q 041967 126 GMARARL----GQWEEAANDLHVASKLDY 150 (227)
Q Consensus 126 a~~~~~~----g~~~~A~~~~~~a~~~~p 150 (227)
|.||..= -+...|..+|.++...++
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 9997643 378899999999999983
No 309
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.80 E-value=0.27 Score=26.88 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=6.6
Q ss_pred HHHHHHHHCCCHHHHHHH
Q 041967 56 LKAVDLISEGKLEDAIGQ 73 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~ 73 (227)
..|-.+..+|+|++|+..
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333333333333333
No 310
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=1.7 Score=39.03 Aligned_cols=96 Identities=20% Similarity=0.013 Sum_probs=60.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH-HHHHHhCCCCHHHHHHH------HHHH
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA-YVALETNPDSAKGYKIR------GMAR 129 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~l------a~~~ 129 (227)
+...+...++...+...+..++..+|.++.++.++|.+....|....++..+ +.+...-|++..+..-+ +..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 3444445566666666677777777777777777777666655444444333 44666777766544444 6666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
..+|...++...+.++..+.|.+
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhh
Confidence 77777777777777777777765
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.68 E-value=3.3 Score=33.86 Aligned_cols=124 Identities=16% Similarity=0.025 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHh----CC---CC
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALET----NP---DS 118 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p---~~ 118 (227)
+.+.+..++.++.......+.+.+..+ +..+++.|...+..+ +++.|+.++++++.+ .+ ..
T Consensus 8 ~~~~A~~~~~K~~~~~~~~~~~~~~~L-----------a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~ 76 (278)
T PF08631_consen 8 DLDLAEHMYSKAKDLLNSLDPDMAEEL-----------ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS 76 (278)
T ss_pred CHHHHHHHHHHhhhHHhcCCcHHHHHH-----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC
Confidence 345778888888888776666666443 466888999999999 999999999999887 21 11
Q ss_pred -------HHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 119 -------AKGYKIRGMARARLGQWEE---AANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 119 -------~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
..++..++.+|...+.++. |...+..+-.-.|+. .+...--++....++.......+.+++..
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2367778999999887664 444555555555664 33322222223345555556666555544
No 312
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=3.5 Score=37.10 Aligned_cols=93 Identities=23% Similarity=0.096 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 66 KLEDAIGQLTEAIMLNPTSAILYAA--RAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~~~~~~~--~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
.-..++..+...+..+|.++..... +...+...+....+...+..++..+|.+..++.++|.++...|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344777788888888888775332 57777778899899999999999999999999999999888887766665555
Q ss_pred H-HHhcCCCh-HHHHHH
Q 041967 144 V-ASKLDYDE-EIGMAL 158 (227)
Q Consensus 144 ~-a~~~~p~~-~~~~~l 158 (227)
. +....|.+ .....+
T Consensus 126 ~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 126 EIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHhcCcchHHHHhhH
Confidence 4 88888888 444333
No 313
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.50 E-value=0.14 Score=28.42 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
+..+|.+-+..++|..|+.+|.+++.
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.48 E-value=0.99 Score=36.98 Aligned_cols=66 Identities=24% Similarity=0.213 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
....++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+...|+..|++.-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345677888999999999999999999999999999999999999999999999999999987664
No 315
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.38 E-value=0.19 Score=27.89 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
.+|..+|.+-...++|.+|+..|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998763
No 316
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.27 E-value=4.5 Score=34.11 Aligned_cols=98 Identities=18% Similarity=0.027 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----------------
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN---------------- 115 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---------------- 115 (227)
..-+.+-....+..+..+-+.....|++++|.++.+|..++.-. .--..+|...++++++..
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQ 262 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc
Confidence 34455667778889999999999999999999999998887543 223445566666655431
Q ss_pred -------CCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 116 -------PDSAKGY--KIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 116 -------p~~~~~~--~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
..+.-.| .++++|-.++|...+|++.++...+-.|-
T Consensus 263 ~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 263 HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 1122233 35899999999999999999988887774
No 317
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.23 E-value=0.78 Score=43.88 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=77.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKL----N---KPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
....++++..+.|++|+..|.+.-...|.- ..+.+..|...+.. | .+.+|+.-|+..- -.|.-|--|.-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 334567778889999999999988888874 46888888888764 2 3556666665533 34677778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.|.+|-++|+|++-+++|.-|++..|..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999987
No 318
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.03 E-value=0.65 Score=31.28 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHcCCcHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 95 YVKLNKPNAAIRDAYVALETNPD---------SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 95 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
..+.|+|..|+..+.+.+..... ...++.++|.++...|.+++|+..++.++++-..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 35789999998888877654322 1357788999999999999999999999988544
No 319
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.02 E-value=0.51 Score=25.79 Aligned_cols=33 Identities=12% Similarity=-0.102 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCcHHHHHH--HHHHHHhCCCC
Q 041967 86 ILYAARAGVYVKLNKPNAAIRD--AYVALETNPDS 118 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~~ 118 (227)
..++.+|..++..|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5688899999999999999999 54888887754
No 320
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.84 E-value=7 Score=35.20 Aligned_cols=125 Identities=8% Similarity=-0.052 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRG 126 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 126 (227)
+.+...|......-...|+++...-.|+.++-........|...+.-.-..|+..-|-..+.++.++. |..+..+...+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 35667788888888889999999999999998888888899999998888899999998888887765 66777888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR 172 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 172 (227)
..-...|++.+|...|+++..-.|+. .+...-..+..+.|+...+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 88899999999999999999988886 44333344445566666555
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.78 E-value=0.15 Score=25.51 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=6.6
Q ss_pred HHHHHHHHcCCcHHHHH
Q 041967 90 ARAGVYVKLNKPNAAIR 106 (227)
Q Consensus 90 ~~g~~~~~~~~~~~A~~ 106 (227)
++|.++...|++++|..
T Consensus 6 ~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 6 ALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 33333333333333333
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.71 E-value=3.1 Score=34.84 Aligned_cols=117 Identities=13% Similarity=-0.021 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH--HcCCHHHHHHHHH
Q 041967 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA-RA--RLGQWEEAANDLH 143 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~--~~g~~~~A~~~~~ 143 (227)
.+..+..|++||+.+|++...+..+-.+..+..+.++...-++.++..+|.+...|..+-.. .. ..-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46778899999999999999988888888888899999999999999999998776664332 22 2334666777777
Q ss_pred HHHhcCCCh-------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 144 VASKLDYDE-------------------EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 144 ~a~~~~p~~-------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+++..-..- .+...+.....+.|..+.|...++.+....-
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 666542211 0112344445678888888888877765544
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.55 E-value=0.66 Score=38.08 Aligned_cols=52 Identities=31% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 92 AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 92 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
+..|...|.+.+|++.+++++.++|-+...+..+-.++..+|+--.+.++|.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 4444445555555555555555555555555555555555555444444444
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.41 E-value=3.6 Score=30.78 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH-HHHHHHHHh
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIG-MALKKVEPN 164 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~l~~~~~~ 164 (227)
..+.....+-...++...+...+.-.-.+.|..+..-..-|.++...|++.+|+..|+.+....|..... ..+..++..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 3566677777788899999999999999999999999999999999999999999999998888887544 466666655
Q ss_pred hhhHHHHHHHHHHHH
Q 041967 165 ARRIQEHRRKYERLR 179 (227)
Q Consensus 165 ~~~~~~a~~~~~~~~ 179 (227)
.++ ...+.......
T Consensus 91 ~~D-~~Wr~~A~evl 104 (160)
T PF09613_consen 91 LGD-PSWRRYADEVL 104 (160)
T ss_pred cCC-hHHHHHHHHHH
Confidence 555 33444334343
No 325
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.92 E-value=0.75 Score=33.68 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN 99 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 99 (227)
.....+...+..|+|..|..+.+.++..+|++..+...++.++.++|
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666555555555554443
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.81 E-value=0.27 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 120 KGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
.+++.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998765
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.69 E-value=2.8 Score=36.99 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=43.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
-...+..|+.-.|-+....++...|..|.....++..+...|+|+.+.+.+.-+-
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~ 350 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVE 350 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchh
Confidence 3445667888888888888888888888888888888888888888887775443
No 328
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.54 E-value=1.1 Score=36.31 Aligned_cols=61 Identities=15% Similarity=0.016 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967 104 AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN 164 (227)
Q Consensus 104 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~ 164 (227)
|..+|.+|+.+.|.+...|..+|.+....|+.-.|+=+|-+++....-. .+..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999764333 445566665554
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.47 E-value=2.4 Score=39.89 Aligned_cols=96 Identities=16% Similarity=0.007 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH----------HhCCC----------CHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAI----------MLNPT----------SAILYAARAGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al----------~~~p~----------~~~~~~~~g~~~~~~~~~~~A~~~~~~a 111 (227)
..|++.+..+-..+|.+.|+++|+++- .-+|. ++..|..-|...-..|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 468888999999999999999998753 22343 3566667788888889999999999887
Q ss_pred HHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967 112 LET---------------------NPDSAKGYKIRGMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 112 l~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 147 (227)
-.. ...+..+-|-+|..|...|++.+|+..|-+|-.
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 432 234556888899999999999999987766543
No 330
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.05 E-value=1.4 Score=39.20 Aligned_cols=87 Identities=20% Similarity=0.046 Sum_probs=73.3
Q ss_pred cCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHH
Q 041967 98 LNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG---QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRR 173 (227)
Q Consensus 98 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 173 (227)
.+....++.+|.+++..-|.....|.+++.++.+.+ +.-.|+..+..+++++|.. ..+-.|.+.+..++...+|..
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 344678999999999999999999999998888765 4556888899999999987 778899999999999999999
Q ss_pred HHHHHHHHHHh
Q 041967 174 KYERLRKEREL 184 (227)
Q Consensus 174 ~~~~~~~~~~~ 184 (227)
....+....+.
T Consensus 467 ~~~alq~~~Pt 477 (758)
T KOG1310|consen 467 CHWALQMSFPT 477 (758)
T ss_pred hHHHHhhcCch
Confidence 88777666554
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.01 E-value=2.3 Score=27.72 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI---RGMARARLGQWEEAAND 141 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---la~~~~~~g~~~~A~~~ 141 (227)
....|.-++...+.++|+..+.++++..++.+..+.. +..+|...|+|.+.+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788888888888888887776654444 45567777777776654
No 332
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.56 E-value=0.89 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 66 KLEDAIGQLTEAIMLNPTSAILYAARA 92 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~~~~~~~~g 92 (227)
+++.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 455555566666665565555555444
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.47 E-value=4.1 Score=31.69 Aligned_cols=53 Identities=26% Similarity=0.211 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPD----SAKGYKIRGMARARLGQWEEA 138 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A 138 (227)
+...+.+|..|. ..+.++++..+.+++++.+. ++.++..++.++..+|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444432 33445555555555554322 244555555555555555544
No 334
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.16 E-value=5.7 Score=38.97 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN---- 115 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---- 115 (227)
+..+..+..++..+...+++++|+..-.++.-+ .|.....|.+++...+..++...|+..+.++..+.
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 356778899999999999999999988776633 23456789999999999999999999999887652
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----h----HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 116 ----PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----E----EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 116 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~----~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
|.-.-...+++.++...++++.|+.+++.|+..... . .....++++....+++..+....
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 333445677888999999999999999999986432 1 12234555555555555544444
No 335
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.00 E-value=0.62 Score=40.19 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVA 145 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a 145 (227)
.+|..|.+|..+++|.+|++.|...
T Consensus 166 ~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 166 TYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544433
No 336
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.87 E-value=4.2 Score=32.69 Aligned_cols=78 Identities=17% Similarity=0.006 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCH
Q 041967 68 EDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--S----AKGYKIRGMARARLGQW 135 (227)
Q Consensus 68 ~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~ 135 (227)
...+.++.+|+..... .......+|.-|+..|++++|+..|+.+...... + ......+..|+..+|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 3445555555553322 1345667899999999999999999998765432 2 34667788888999988
Q ss_pred HHHHHHHHHH
Q 041967 136 EEAANDLHVA 145 (227)
Q Consensus 136 ~~A~~~~~~a 145 (227)
+..+...-+.
T Consensus 235 ~~~l~~~leL 244 (247)
T PF11817_consen 235 EDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHH
Confidence 8877665444
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.86 E-value=1.6 Score=33.95 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----SAILYAARAGVYVKLNKPNAAI 105 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~ 105 (227)
.++..+.+|..|. +.+.++|+.+|.++|++.+. ++..+..++.++++.|+++.|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5677788877665 78999999999999997644 5899999999999999999874
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.79 E-value=3.6 Score=32.58 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=54.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH
Q 041967 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120 (227)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 120 (227)
...+++.+..++|+.....-++.+|.+......+-..++-.|++++|...++-+-.+.|.+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 456788899999999999999999998887777778888899999999999999999998764
No 339
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.37 E-value=4.2 Score=39.81 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIG------QLTEA-IMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN------ 115 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------ 115 (227)
..+...+..|...+..+.|.+|.+ ++... -.+.|..+..|..++..+.+.++++.|+....++..+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 356778888999999999998888 44422 23467778899999999999999999999998876553
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC---Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 116 --PDSAKGYKIRGMARARLGQWEEAANDLHVASKL-----DY---DE-EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 116 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
|+....|.+++...+..+....|+..+.++..+ .| .- .+..+++.+....++++.+....+.+.+
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334568888999999999988999988888776 23 22 2234666666667777777777766654
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.33 E-value=2.6 Score=34.72 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
..+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.++..|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4456677788899999999999999999999999999999999999999888888887653
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.19 E-value=4.1 Score=32.24 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=54.8
Q ss_pred HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967 94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE 153 (227)
Q Consensus 94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 153 (227)
-+++-+...+|+...+.-++.+|.+......+-.+|+-.|++..|...++-+-++.|...
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 455778899999999999999999999999999999999999999999999999999873
No 342
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=13 Score=32.92 Aligned_cols=92 Identities=15% Similarity=-0.021 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCH-
Q 041967 50 AANMTKLKAVDLIS-EGKLEDAIGQLTEAIMLN---PTS----AILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSA- 119 (227)
Q Consensus 50 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~---p~~----~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~- 119 (227)
.+.....+|..++. ..+++.|...+++|..+. |+. -.++..++.+|.+.. .+..+...++++|++...++
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence 34455555554443 456666777777766543 222 134555666666655 56666666777776654443
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHH
Q 041967 120 ---KGYKIRGMARARLGQWEEAAND 141 (227)
Q Consensus 120 ---~~~~~la~~~~~~g~~~~A~~~ 141 (227)
+..+.++.++.-..++..|...
T Consensus 125 wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 125 WSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hhHHHHHHHHHHHhhhccchhHHHH
Confidence 3455566666666666666654
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.07 E-value=6 Score=38.11 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHH-
Q 041967 50 AANMTKLKAVDLISE-------GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKG- 121 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~- 121 (227)
..++.+..|.+.+.+ ..+.+|+..|++. .-.|.-|-=|...|.+|..+|++++-++++.-|++..|.+|..
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 511 GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 346677777776653 2477888888773 4456667778999999999999999999999999999998753
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 122 ------YKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 122 ------~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
-+++-.+..... ..|.....-++.+-|..
T Consensus 590 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 590 RLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCccc
Confidence 334444433332 34667777778888865
No 344
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.06 E-value=3.6 Score=35.44 Aligned_cols=95 Identities=16% Similarity=0.051 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--------CCCHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETN--------PDSAK 120 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~ 120 (227)
.++..+|.-|..-|+++.|+++|.++-...-. ....+.+.-.+-..+|+|-....+..+|...- .-.++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 56788999999999999999999997766543 24567778888888999998888888887652 01234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a~ 146 (227)
....-|.+...+++|+.|.++|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56667888888889999998887553
No 345
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.61 E-value=8.8 Score=35.61 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.-.++.++|..+.....|++|.++|...-. .-+...|+++..+|.+ ++.....-|++.+.+-.+|.++
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHH
Confidence 346788888888888889999888877532 3446778877777776 5555555689999999999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVA 145 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a 145 (227)
...|.-++|++.|.+.
T Consensus 863 ~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HhhchHHHHHHHHHhc
Confidence 9999999999888764
No 346
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.55 E-value=1.6 Score=22.15 Aligned_cols=30 Identities=20% Similarity=-0.007 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 99 NKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 99 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
|+++.|...|++++...|..+..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777888888888888777777766543
No 347
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.47 E-value=19 Score=32.60 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 041967 68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR-GMARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~ 146 (227)
+.+...|...|...|.+..+|...|....+.|..+.+...|++++.--|.....|..+ +.+-...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5566678888889999999999999999999999999999999999989777776653 455556777777777888888
Q ss_pred hcCCCh----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 147 KLDYDE----EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 147 ~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
.....+ ..|..+-+.....+.+.....-|++.....
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP 181 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence 876553 445555444455666666666666665443
No 348
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.34 E-value=2.2 Score=31.28 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 135 (227)
......++...+..|++.-|...++.++..+|++..+...++.++..+|..
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 566777888888899999999999999999999999999999988877754
No 349
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.33 E-value=19 Score=32.45 Aligned_cols=118 Identities=16% Similarity=-0.007 Sum_probs=83.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV-YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 134 (227)
..-+...+..=...|...|.+|-+..-...+.+..-|.. |+..++..-|...|+-.++..++.+..-.....-+..+|+
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc
Confidence 333444444456667777777765433333455444444 3456899999999999999999999988888889999999
Q ss_pred HHHHHHHHHHHHhc--CCCh--HHHHHHHHHHHhhhhHHHHHH
Q 041967 135 WEEAANDLHVASKL--DYDE--EIGMALKKVEPNARRIQEHRR 173 (227)
Q Consensus 135 ~~~A~~~~~~a~~~--~p~~--~~~~~l~~~~~~~~~~~~a~~ 173 (227)
-..|...|++++.. .|+. ++|...-....+.|+..-..+
T Consensus 451 d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 451 DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987 4443 667766666666776654443
No 350
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=10 Score=30.90 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041967 64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPN-AAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDL 142 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 142 (227)
..+..+-+.++.+.+.-+|.+...|.-+-.+.-..|++. .-+..+..++..+..|-.+|..+--+....+.++.-+.+.
T Consensus 91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 346778888899999999999888887777777778877 7888888889888888888888888888888888877777
Q ss_pred HHHHhcCCCh
Q 041967 143 HVASKLDYDE 152 (227)
Q Consensus 143 ~~a~~~~p~~ 152 (227)
...+..+-.|
T Consensus 171 ~~Lle~Di~N 180 (318)
T KOG0530|consen 171 DELLEEDIRN 180 (318)
T ss_pred HHHHHHhhhc
Confidence 7777766544
No 351
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=11 Score=32.50 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH----hCCCCHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLN-----P-TSAILYAARAGVYVKLNKPNAAIRDAYVALE----TNPDSAKG 121 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~ 121 (227)
..|+-....+-..++...-...+...+... . .-+...+.+-.+|+..+.|+.|-....+..- .+..+...
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 345555555555566444444444433321 1 1134566667788888888888776665541 11244678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 122 YKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 122 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.|.+|.+-.-+++|..|.++|-.|+...|..
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 8899999999999999999999999999975
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.54 E-value=3.7 Score=23.52 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967 123 KIRGMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~ 147 (227)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455666666666666666665553
No 353
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.48 E-value=14 Score=30.05 Aligned_cols=93 Identities=18% Similarity=0.042 Sum_probs=68.6
Q ss_pred HHHHHHHHHHC-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967 54 TKLKAVDLISE-----G--KLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGY 122 (227)
Q Consensus 54 ~~~~g~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 122 (227)
.+.+|..+..- - +...|+..|.++-... ++.+.+.+|.+|.. ..++.+|+.+|.++..... ..+.
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 56666666554 1 3347999999987765 78899999988866 3478999999999999877 8888
Q ss_pred HHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 041967 123 KIRGMARARLG---------------QWEEAANDLHVASKLDYD 151 (227)
Q Consensus 123 ~~la~~~~~~g---------------~~~~A~~~~~~a~~~~p~ 151 (227)
+.++ ++...| +...|..++..+....+.
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 9999 777666 555666666665555443
No 354
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.06 E-value=5 Score=34.84 Aligned_cols=84 Identities=19% Similarity=0.001 Sum_probs=57.2
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhCC--------CCH--------H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-
Q 041967 92 AGVYVKLNKPNAAIRDAYVALETNP--------DSA--------K--GYKIRGMARARLGQWEEAANDLHVASKLDYDE- 152 (227)
Q Consensus 92 g~~~~~~~~~~~A~~~~~~al~~~p--------~~~--------~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~- 152 (227)
|...++++.|..|.--|..++++.. ..+ . .--.+..||..+++.+-|+.+..+.+-++|..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 3344455666666655555555431 111 1 22347899999999999999999999999987
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 153 EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
.-...-+.+..++.+|.+|.+.+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777776655
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.75 E-value=5.3 Score=32.07 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
......|..++..|+|++|+.+|+.+....... ..++..+..|+...|+.+..+..+-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345689999999999999999999997654432 4567788899999999998887765443
No 356
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.51 E-value=9.7 Score=27.17 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM-------LNPTS----AILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
+-.+-.++-.+...|+|++++.....+|. ++.+. ..+.+++|..+-.+|..++|+..|+++-+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44566778888999999998888877774 34443 346788999999999999999999988654
No 357
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.15 E-value=12 Score=34.39 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----C---CCC-------------------HHHHHHHHHHHHHcCCcHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML----N---PTS-------------------AILYAARAGVYVKLNKPNA 103 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~---p~~-------------------~~~~~~~g~~~~~~~~~~~ 103 (227)
.+-.++--|...+..+..+.|.+++.++++. . +.. ....+..+.+.+-.+++..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 3566777888888889888888888888753 1 110 2345567888888999999
Q ss_pred HHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCChHH
Q 041967 104 AIRDAYVALETN---PD------SAKGYKIRGMARARLGQWEEAANDLH--------VASKLDYDEEI 154 (227)
Q Consensus 104 A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~a~~~~p~~~~ 154 (227)
|......+.... |. .+..++..|..+-..|+.+.|...|. .+....+.++.
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 999998777653 22 36688899999999999999999998 56666666544
No 358
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.86 E-value=32 Score=33.64 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
+.+..|..+|..-+..|...+|++.|-+| +++..|........+.|.|+.-+.++..+-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 35678999999999999999999999765 56788888888888999999999888887653
No 359
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.77 E-value=11 Score=27.00 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHH----HHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAYV----ALE 113 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~~----al~ 113 (227)
.+...|+..++.+++-.++-.|++|+.+...- ....-|+|..+..+|+.+-.+.+++- ++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999753221 23456889999999999988888864 456
Q ss_pred hCCCCH----HH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 041967 114 TNPDSA----KG-YKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKK 160 (227)
Q Consensus 114 ~~p~~~----~~-~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~ 160 (227)
+-|.-+ .+ ...+|.| ..|+ -..++..|+..+...+..
T Consensus 83 LiPQCp~~~C~afi~sLGCC-------k~AL---l~F~KRHPNP~iA~~vq~ 124 (140)
T PF10952_consen 83 LIPQCPNTECEAFIDSLGCC-------KKAL---LDFMKRHPNPEIARLVQH 124 (140)
T ss_pred hccCCCCcchHHHHHhhhcc-------HHHH---HHHHHhCCCHHHHHHHHh
Confidence 666543 23 3334544 3333 334567787766655543
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.45 E-value=2.1 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
.+.+|..|..+|+++.|...++.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 357899999999999999999999853
No 361
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.35 E-value=2.9 Score=27.00 Aligned_cols=30 Identities=37% Similarity=0.381 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...|..+=+.|++.+|+.+|+++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355566666777777777777777666553
No 362
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=85.29 E-value=29 Score=31.60 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=65.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967 60 DLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA 139 (227)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 139 (227)
++.+++..+++....+.-+.....++...+..+..+-..++.++|-.+|++.+..+|+ .+++.++.-+.+.|-..+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 3445556777777776655555556777888899999999999999999999999999 67888889999999888887
Q ss_pred HHHH
Q 041967 140 NDLH 143 (227)
Q Consensus 140 ~~~~ 143 (227)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7766
No 363
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.04 E-value=2.2 Score=36.88 Aligned_cols=61 Identities=21% Similarity=0.017 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---------SAILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
-.+..+..++.-.|||..|++.++. |+++.. ....++..|-+|+.+++|..|+..|..++.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888889999999998765 343332 245788899999999999999999998874
No 364
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.94 E-value=0.91 Score=38.14 Aligned_cols=77 Identities=16% Similarity=0.020 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
...+.+.+.++.+.+..|+..-..++..++....+++.++..++...++++|++++..+....|.+....-.+..+-
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 44556777788888899988888888888888889999999999999999999999999999999986655444433
No 365
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=83.06 E-value=2.5 Score=33.58 Aligned_cols=103 Identities=18% Similarity=0.108 Sum_probs=59.0
Q ss_pred HHCCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHcCC-cHHH-HHHHHHHHHhC--CCCH--HHHH
Q 041967 62 ISEGKLEDAIGQLTEAIMLN---PTS---------AILYAARAGVYVKLNK-PNAA-IRDAYVALETN--PDSA--KGYK 123 (227)
Q Consensus 62 ~~~~~~~~A~~~~~~al~~~---p~~---------~~~~~~~g~~~~~~~~-~~~A-~~~~~~al~~~--p~~~--~~~~ 123 (227)
+--|+|+.|+....-||..+ |+. ++-...-+......|+ ++.. ...+..+..-. |+.. +.|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34688999999999999864 321 2223333444455555 2222 22222222111 2333 3444
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 041967 124 IRGMARA---------RLGQWEEAANDLHVASKLDYDEEIGMALKKVEPN 164 (227)
Q Consensus 124 ~la~~~~---------~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~ 164 (227)
..|..+. ..+....|+.+|++|+.++|.-.+...+..+...
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~ 223 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERR 223 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 5676663 4457788999999999999886555555544433
No 366
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=82.63 E-value=13 Score=25.64 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK 100 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 100 (227)
..+......|...+..|+|..|.+...++-+..+..+-.|..-+.+...+||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 4556777788888888888888888888866654444445444555555543
No 367
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.59 E-value=40 Score=31.00 Aligned_cols=100 Identities=19% Similarity=0.093 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----
Q 041967 49 DAANMTKLKAVDLI-SEGKLEDAIGQLTEAIMLNPT--SA----ILYAARAGVYVKLNKPNAAIRDAYVALETNPD---- 117 (227)
Q Consensus 49 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~--~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---- 117 (227)
..+...+.+|.+++ .-.+++.|..++.+++.+... .. .+.+.++.++.+.+... |+..++++|+....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46788999999999 557999999999999887643 22 34456688887777766 99999999887655
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcC
Q 041967 118 SAKGYKIRGMA--RARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 118 ~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~ 149 (227)
.+...|++-.+ +...+++..|+..++......
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 33444444322 222379999999999888876
No 368
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.41 E-value=13 Score=28.49 Aligned_cols=51 Identities=31% Similarity=0.206 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 101 PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 101 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
....++..++.++..| ++.++.+++.++...|+.++|.....++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3345566677777777 67788999999999999999999999999999954
No 369
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.39 E-value=5.1 Score=25.10 Aligned_cols=30 Identities=33% Similarity=0.260 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...|..+=..|+|++|+.+|.+++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355666777777777888888888777764
No 370
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.16 E-value=34 Score=30.02 Aligned_cols=126 Identities=17% Similarity=0.045 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCCcH----------HHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP-----------TSAILYAARAGVYVKLNKPN----------AAIRDA 108 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~~g~~~~~~~~~~----------~A~~~~ 108 (227)
.+..+..+|..++....|.+|+-++-.|=+... +.+-.-..+.+||+.+.+.. .|...|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 566789999999999999999998876654322 22344455678888876632 233333
Q ss_pred HHHH--------HhC-CCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----ChHHHH-----------HH
Q 041967 109 YVAL--------ETN-PDSAK------GYKIRGMARARLGQWEEAANDLHVASKLDY----DEEIGM-----------AL 158 (227)
Q Consensus 109 ~~al--------~~~-p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~-----------~l 158 (227)
.++. .+. +..+. .+..-|.+.+.+|+-++|..+++.+...-. .++.|. .-
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaR 321 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDAR 321 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHH
Confidence 3321 121 23332 334459999999999999999998765422 122221 11
Q ss_pred HHHHHhhhhHHHHHHHH
Q 041967 159 KKVEPNARRIQEHRRKY 175 (227)
Q Consensus 159 ~~~~~~~~~~~~a~~~~ 175 (227)
-.+..+.|+...|...+
T Consensus 322 laLRsc~g~Vd~AvqfI 338 (568)
T KOG2561|consen 322 LALRSCNGDVDSAVQFI 338 (568)
T ss_pred HHHHhccccHHHHHHHH
Confidence 22345667777777666
No 371
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.51 E-value=5.7 Score=25.73 Aligned_cols=31 Identities=29% Similarity=0.170 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML 80 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 80 (227)
.+..+...|..+=+.|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566777777777888888888888887753
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.31 E-value=6 Score=35.02 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=74.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 135 (227)
..+...-..|+|+.|+..+.-+-..-.....+.--+-..+...|.++.|.......+.-.-..+++...-+..-..+|-+
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHH
Confidence 35566667799999988876554432222233334556777899999999999999988878888877778888889999
Q ss_pred HHHHHHHHHHHhcCCCh
Q 041967 136 EEAANDLHVASKLDYDE 152 (227)
Q Consensus 136 ~~A~~~~~~a~~~~p~~ 152 (227)
+++..++++.+.++|..
T Consensus 408 d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 408 DKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHhccCChh
Confidence 99999999999999864
No 373
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.59 E-value=5.5 Score=25.81 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
+..+...|..+=..|+|++|+.+|.++|.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45556666666666777777776666654
No 374
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.58 E-value=49 Score=30.13 Aligned_cols=106 Identities=15% Similarity=-0.044 Sum_probs=70.2
Q ss_pred HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH-HHHHHHHHcCCcHHHHHHHHHH-----HHhCCC
Q 041967 45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-SAILYA-ARAGVYVKLNKPNAAIRDAYVA-----LETNPD 117 (227)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~-~~g~~~~~~~~~~~A~~~~~~a-----l~~~p~ 117 (227)
+++....-+++..-..+-+.|.|..|.+..+-.+.++|. +|-+.. .+-...++..+|+=-|+.++.. +..-|+
T Consensus 336 ~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN 415 (665)
T KOG2422|consen 336 PENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN 415 (665)
T ss_pred hhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC
Confidence 344455666777777788899999999999999999998 665433 3333344556677767766665 344455
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Q 041967 118 SAKGYKIRGMARARLGQ---WEEAANDLHVASKLDYD 151 (227)
Q Consensus 118 ~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~ 151 (227)
+. .-..+|..|..... ...|...+.+|++..|.
T Consensus 416 ~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 416 FG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred ch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 43 22223444444444 55688889999999883
No 375
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.38 E-value=34 Score=28.22 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 64 EGKLEDAIGQLTEAIMLNPTSA----ILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~~p~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
..+.++|+..|++++.+.|.-. -++-.+...++++++|.+.+..|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3567778888888887776532 2555666777777888777777776654
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.77 E-value=16 Score=32.17 Aligned_cols=69 Identities=10% Similarity=-0.020 Sum_probs=46.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 135 (227)
.+-...++.|+.+.|.+... ..+++..|-.+|...+..|+++-|..+|.++-. +-.+..+|...|+.
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-H
T ss_pred HHhHHHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCH
Confidence 34456667788888877442 334778999999999999999999999877542 23445555666665
Q ss_pred HH
Q 041967 136 EE 137 (227)
Q Consensus 136 ~~ 137 (227)
+.
T Consensus 390 ~~ 391 (443)
T PF04053_consen 390 EK 391 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 377
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.72 E-value=63 Score=30.91 Aligned_cols=100 Identities=23% Similarity=0.196 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA- 119 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~- 119 (227)
.+.-....+.......+|.+|..++.++-..-|. .+.....+|.+....|++++|+...+.++..=|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4556667788888999999999998887664332 145666788999999999999999999998877663
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 120 ----KGYKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 120 ----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
.++...|.+..-.|++.+|..+...+.++.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 467778999999999999999999888874
No 378
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=78.43 E-value=25 Score=29.76 Aligned_cols=86 Identities=20% Similarity=0.076 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET--NPDSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
+|..-..+|+......| ++..-.|++.+..+..-...++...+..... =..+..++-..|..+.++|...+|...|.
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 45555566666555555 4556667777777777777777777665544 12344566778999999999999999999
Q ss_pred HHHhcCCCh
Q 041967 144 VASKLDYDE 152 (227)
Q Consensus 144 ~a~~~~p~~ 152 (227)
+++.+.++.
T Consensus 390 rAi~La~~~ 398 (415)
T COG4941 390 RAIALARNA 398 (415)
T ss_pred HHHHhcCCh
Confidence 999998776
No 379
>PF12854 PPR_1: PPR repeat
Probab=78.07 E-value=6.1 Score=20.92 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~ 110 (227)
...|..+-..|.+.|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555666666666666666666653
No 380
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.12 E-value=58 Score=29.67 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCC----------------C---HHHHHHHHHHHHHcCCcHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM-----LNPT----------------S---AILYAARAGVYVKLNKPNAA 104 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~----------------~---~~~~~~~g~~~~~~~~~~~A 104 (227)
.....+...+.....+|+.+-|-.+..++|= ..|. + .-+++..-....+.|.+.-|
T Consensus 282 YHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA 361 (665)
T KOG2422|consen 282 YHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTA 361 (665)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHH
Confidence 4567788888888888888888777777772 1121 1 12333344555567899999
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 041967 105 IRDAYVALETNPD-SAKGYKIRGMARA-RLGQWEEAANDLHVA 145 (227)
Q Consensus 105 ~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a 145 (227)
.++|..++.++|. +|-+...+-..|+ +..+|.--+..++..
T Consensus 362 ~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 362 LEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999998 7765555544443 445555555544433
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.10 E-value=13 Score=28.36 Aligned_cols=49 Identities=22% Similarity=0.146 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 116 (227)
....++..++.+...| ++..+.+++.++...|+.++|.....++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455566677777778 588899999999999999999999999999999
No 382
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=76.46 E-value=10 Score=26.95 Aligned_cols=30 Identities=27% Similarity=0.168 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
..+|..+...|++.+|..+|-+|+.+.|..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 347999999999999999999999999886
No 383
>PF15469 Sec5: Exocyst complex component Sec5
Probab=76.32 E-value=27 Score=26.46 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 041967 133 GQWEEAANDLHVASKLDYDE-EIGMAL 158 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~-~~~~~l 158 (227)
...++....+...+.++|.. ++|..+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 34566667777777777765 777655
No 384
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=76.11 E-value=52 Score=28.62 Aligned_cols=119 Identities=14% Similarity=0.029 Sum_probs=49.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTS--AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-AKGYKIRGMARARL 132 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 132 (227)
..|.+....|+-..|.++-.++-++-..+ +-+...-+..-+--|+++.|.+-|+-.+.- |.. .-.+--+-.--.+.
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhc
Confidence 34444444455555555544443221111 222223344444445555555555544422 211 11222222222345
Q ss_pred CCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHhhhhHHHHHHHH
Q 041967 133 GQWEEAANDLHVASKLDYDEE-IGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
|..+.|..+-..+....|.-. .+..+-...-..|+|..+.+-.
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 555555555555555555431 1222223333445555555444
No 385
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.89 E-value=55 Score=34.81 Aligned_cols=101 Identities=18% Similarity=0.049 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CC----------
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PD---------- 117 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~---------- 117 (227)
..++.|.+.|....+.|+++-|...+-+|.+.. -+.++..+|..+...|+...|+..++..+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 467899999999999999999999999998876 46889999999999999999999999999665 22
Q ss_pred C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCC
Q 041967 118 S------AKGYKIRGMARARLGQW--EEAANDLHVASKLDYD 151 (227)
Q Consensus 118 ~------~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~p~ 151 (227)
. .++.+..+.-....+++ .+-++.|..+..+.|.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 1 12444445555555554 3567889999999984
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.51 E-value=43 Score=31.95 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----HH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----AK 120 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~ 120 (227)
.++..--+|.+....|+++.|+++...++..-|.+ ..++...|.+..-.|++.+|......+.+....+ ..
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 45666678889999999999999999999987764 4578889999999999999999998887773222 22
Q ss_pred --HHHHHHHHHHHcCCH
Q 041967 121 --GYKIRGMARARLGQW 135 (227)
Q Consensus 121 --~~~~la~~~~~~g~~ 135 (227)
+.+..+.++..+|+.
T Consensus 537 ~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 537 LWSLLQQSEILEAQGQV 553 (894)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 333347777888843
No 387
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=75.39 E-value=28 Score=29.65 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 111 (227)
..-+|+..++.++..+|.+......+..+|...|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4577888999999999999999999999999999999999999653
No 388
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=75.24 E-value=9.7 Score=24.37 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...|...=..|+|++|+.+|..++.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677777777777777777777664
No 389
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.62 E-value=19 Score=30.70 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT--------SAILYAARAGVYVKLNKPNAAI 105 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~g~~~~~~~~~~~A~ 105 (227)
.....+...|+.++.+++++.|...|..|..+... +..+++.+|.+++..+.++..+
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999976432 4567888999998887766543
No 390
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.87 E-value=8.6 Score=24.84 Aligned_cols=30 Identities=37% Similarity=0.385 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML 80 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 80 (227)
+..+...|...=..|+|++|+.+|..+++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 455555666666666777777777666653
No 391
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=73.48 E-value=72 Score=30.03 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN 164 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~ 164 (227)
.++.++|..+..+..++.|.++|...-- .-+...|++.+++|.+ ++.+...-|++ +....++....+
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHh
Confidence 4666677777777777777766654321 2245566666666654 34444555766 666677777777
Q ss_pred hhhHHHHHHHHHH
Q 041967 165 ARRIQEHRRKYER 177 (227)
Q Consensus 165 ~~~~~~a~~~~~~ 177 (227)
.|--.+|...|-+
T Consensus 865 vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLR 877 (1189)
T ss_pred hchHHHHHHHHHh
Confidence 7777777776643
No 392
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.51 E-value=58 Score=29.30 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCh
Q 041967 87 LYAARAGVYVKLNKPNAAIRDAYVALETN---PD----SAKGYKIRGMARARLGQ-WEEAANDLHVASKLDYDE 152 (227)
Q Consensus 87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~ 152 (227)
.+..+|.++.++|+...|..+|..++... .. .|-++|.+|..+..+|. ..+|..++.+|-....+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 56778999999999999999999887331 11 25699999999999999 999999999998777554
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.32 E-value=69 Score=28.28 Aligned_cols=77 Identities=23% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 133 (227)
....+..+.++|-++.|+..- .++...+.++ .+.|+.+.|.+.. ...+++..|-.+|......|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcC
Confidence 344555666777777777642 3457777665 4689999887765 23447789999999999999
Q ss_pred CHHHHHHHHHHHH
Q 041967 134 QWEEAANDLHVAS 146 (227)
Q Consensus 134 ~~~~A~~~~~~a~ 146 (227)
+++-|..+|+++-
T Consensus 362 ~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 362 NIELAEECYQKAK 374 (443)
T ss_dssp BHHHHHHHHHHCT
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999764
No 394
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.12 E-value=9.9 Score=24.55 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=10.6
Q ss_pred HcCCcHHHHHHHHHHHHh
Q 041967 97 KLNKPNAAIRDAYVALET 114 (227)
Q Consensus 97 ~~~~~~~A~~~~~~al~~ 114 (227)
..|++++|+..|.+++..
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 345666666666666544
No 395
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=70.96 E-value=14 Score=23.51 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
+..+...|..+=..|++++|+.+|..++.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455556666666666666666666654
No 396
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=70.92 E-value=20 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT 83 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 83 (227)
.......|..++..|++.+|..+|-+||..+|.
T Consensus 63 Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 63 FLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 445677899999999999999999999999886
No 397
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=70.90 E-value=25 Score=22.67 Aligned_cols=13 Identities=23% Similarity=-0.056 Sum_probs=6.5
Q ss_pred HHHHHHHhcCCCh
Q 041967 140 NDLHVASKLDYDE 152 (227)
Q Consensus 140 ~~~~~a~~~~p~~ 152 (227)
..+.+++...|++
T Consensus 34 e~L~q~~~~~pD~ 46 (75)
T cd02682 34 EVLSQIVKNYPDS 46 (75)
T ss_pred HHHHHHHHhCCCh
Confidence 3344555555554
No 398
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=70.59 E-value=39 Score=24.72 Aligned_cols=62 Identities=18% Similarity=-0.003 Sum_probs=36.8
Q ss_pred HHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 88 YAARAGVYV-KLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 88 ~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
|..+|.-+. ..|.-++--..+....+.+..++..+..+|.+|.++|+..++-..+.+|.+..
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444444333 44555555555555555666778888888888888888888888888887764
No 399
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.55 E-value=41 Score=24.93 Aligned_cols=81 Identities=14% Similarity=-0.042 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhh
Q 041967 87 LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGM-ALKKVEPNA 165 (227)
Q Consensus 87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~l~~~~~~~ 165 (227)
.+.....+-...+++..+...+.-.--+.|..+..-..-|.++...|++.+|+..|.....-.+.....+ .+..+..-.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 3444555556688999999999998899999999999999999999999999999999988877754433 555555555
Q ss_pred hh
Q 041967 166 RR 167 (227)
Q Consensus 166 ~~ 167 (227)
|+
T Consensus 92 ~D 93 (153)
T TIGR02561 92 GD 93 (153)
T ss_pred CC
Confidence 54
No 400
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=70.04 E-value=14 Score=23.82 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...|...=..|+|++|+.+|..++.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345556666666666777777777766664
No 401
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=69.45 E-value=11 Score=19.92 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 101 PNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 101 ~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
++.|...|++.+...|+ +..|+..|
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 45566666666655543 44444444
No 402
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=69.23 E-value=43 Score=29.71 Aligned_cols=70 Identities=4% Similarity=-0.173 Sum_probs=56.5
Q ss_pred HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
.+++...-.|+.+-..+-.++.+++-.+.|.+.....|--+++|...-.-.+..++|......|.+++.-
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3455677889999999999999999999999998888887787776666566678888888888887754
No 403
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=69.14 E-value=28 Score=22.48 Aligned_cols=15 Identities=27% Similarity=0.049 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcCCCh
Q 041967 138 AANDLHVASKLDYDE 152 (227)
Q Consensus 138 A~~~~~~a~~~~p~~ 152 (227)
|+..|..+++..|+.
T Consensus 32 aie~l~~~lk~e~d~ 46 (77)
T cd02683 32 GIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHhhCCCH
Confidence 444455555566654
No 404
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.71 E-value=14 Score=23.73 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...|...=..|+|++|+.+|..+|+
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345566666666667777777777777765
No 405
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=68.66 E-value=26 Score=21.82 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=8.0
Q ss_pred HHcCCHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVAS 146 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~ 146 (227)
-..|++.+|+.+|..++
T Consensus 16 D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHTTSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 34445555544444443
No 406
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=81 Score=27.45 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHhCC
Q 041967 50 AANMTKLKAVDLISEGKL-EDAIGQLTEAIMLNPTSAILYAARAGVYVKL------------NKPNAAIRDAYVALETNP 116 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~------------~~~~~A~~~~~~al~~~p 116 (227)
.....+.+-...-..|.| .+++..=.+.+..+|....+|.-+=.++... ...+.-+.....+++.+|
T Consensus 27 ~~~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~np 106 (421)
T KOG0529|consen 27 QLRSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNP 106 (421)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCc
Confidence 344555566666667777 4577777778889998777666544333221 235567788889999999
Q ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967 117 DSAKGYKIRGMARARLGQ--WEEAANDLHVASKLDYDE-EIGMALKKVEP 163 (227)
Q Consensus 117 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~ 163 (227)
+.-.+|+-+..++.+.+- +..-++.+.++++.+|.| -.|..-..+..
T Consensus 107 ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 107 KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 999999999999998774 567889999999999998 77765544443
No 407
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.22 E-value=53 Score=25.28 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-SA-ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----AKGYKIRG 126 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la 126 (227)
--|..+..+-+.+..++|+.-|...-+..-. .+ -+.+..|.+....|+...|+..|..+-.-.|.- --+..+-+
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3455566677788899999988886654433 33 367777888888899999999998876655432 23566678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
.++...|.|++-..-.+ .+..+.+. .....|+-...+.|++..++..|..+..
T Consensus 140 ~lLvD~gsy~dV~srve-pLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVE-PLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhh-hccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888898887554443 22222221 3345777777888999999998877765
No 408
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=67.16 E-value=10 Score=18.74 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=7.4
Q ss_pred HHHHHcCCcHHHHHHHHH
Q 041967 93 GVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 93 ~~~~~~~~~~~A~~~~~~ 110 (227)
.+|.+.|++++|...|++
T Consensus 8 ~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHccchHHHHHHHHHH
Confidence 333344444444444433
No 409
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=66.98 E-value=20 Score=22.80 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
+..+...|...=..|+|++|+.+|..++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666777777777766664
No 410
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=66.32 E-value=49 Score=24.22 Aligned_cols=116 Identities=10% Similarity=0.093 Sum_probs=50.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------H----HHHHHHHHH--HHcCCcHHHHHHHHHHHHhCCC
Q 041967 58 AVDLISEGKLEDAIGQLTEAIMLNPTSA--------------I----LYAARAGVY--VKLNKPNAAIRDAYVALETNPD 117 (227)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~----~~~~~g~~~--~~~~~~~~A~~~~~~al~~~p~ 117 (227)
|...+..|..++.++...+.+...+-.. . .+-.+|..+ ...|+....+.++- ..+-.
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~---~~n~~ 85 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYA---KRNKL 85 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHH---HTT--
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHH---Hhcch
Confidence 4555666777777777777665544310 0 111122211 12355555555552 22222
Q ss_pred CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 118 SAKGYKIRGM-ARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 118 ~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
+. |..+|. .+...|.-+.-.+.+....+-+ +..+....++..+...|+..++..-+.++
T Consensus 86 se--~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 86 SE--YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -H--HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 21 333433 3445555554444444444322 22255556777777777776666555433
No 411
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.35 E-value=1.5e+02 Score=29.44 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041967 119 AKGYKIRGMARARLGQWEEAANDLHV 144 (227)
Q Consensus 119 ~~~~~~la~~~~~~g~~~~A~~~~~~ 144 (227)
+.+|..+|.+....|...+|+..|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 44455555555555555555554443
No 412
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.25 E-value=61 Score=24.94 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCCcHHHHHHHHHHH-HhCCCCHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT--S--AILYAARAGVYVKLNKPNAAIRDAYVAL-ETNPDSAKGYKIR 125 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l 125 (227)
.-+.+..|.+...+|+...|+..|.++-.-.|- - -.+...-+..+...|-|+....-.+..- .-+|-...+.--|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 346778889999999999999999997654332 1 1244555667777888887666554432 2334444566678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 041967 126 GMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~ 147 (227)
|..-.+.|++.+|.++|.....
T Consensus 174 glAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc
Confidence 9999999999999999998776
No 413
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.35 E-value=36 Score=32.28 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML-NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+.+...|..++++|+|++|...|-+.|.. +|....-.+ +.......-..+++...+..-.+.+--..|-.|
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~IknLt~YLe~L~~~gla~~dhttlLLnc 440 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQRIKNLTSYLEALHKKGLANSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHHHHHHHHHHHHHHHcccccchhHHHHHHH
Confidence 4567888899999999999999999888863 333211111 112222233333444444433344334444556
Q ss_pred HHHcCCHH
Q 041967 129 RARLGQWE 136 (227)
Q Consensus 129 ~~~~g~~~ 136 (227)
|.++++.+
T Consensus 441 YiKlkd~~ 448 (933)
T KOG2114|consen 441 YIKLKDVE 448 (933)
T ss_pred HHHhcchH
Confidence 66666544
No 414
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.87 E-value=26 Score=26.95 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTSAILY 88 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 88 (227)
.+++++|.|++|.+.+++... +|++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r 147 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLR 147 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHH
Confidence 344455555555555555444 44443333
No 415
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=61.43 E-value=47 Score=31.43 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=62.0
Q ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHH------HHh------------
Q 041967 55 KLKAVDLISEGK-LEDAIGQLTEAIMLNPTSA-ILYAARAGVYVKLNKPNAAIRDAYVA------LET------------ 114 (227)
Q Consensus 55 ~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~------------ 114 (227)
+.++..+|++|+ |.+|+++..-++ |... ..--.-|.-+.++|+++.|+.+|-.+ ++.
T Consensus 677 ~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ 753 (1636)
T KOG3616|consen 677 FDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAIS 753 (1636)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHh
Confidence 457788888885 677777665443 2211 11122355555667777766666432 110
Q ss_pred ------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 115 ------N-PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 115 ------~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
+ ......|-..+..|...|+|+-|.+.|-++-..+ + .-.++.+.|+|.++.+-..+.
T Consensus 754 ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~---d----ai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 754 ILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFK---D----AIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhH---H----HHHHHhccccHHHHHHHHHHh
Confidence 0 1112345556788888888888887776543221 1 112334556666665544433
No 416
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.22 E-value=1.4e+02 Score=27.79 Aligned_cols=56 Identities=7% Similarity=-0.150 Sum_probs=38.7
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967 92 AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 92 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 147 (227)
....+..++++.+...+...-..........|++|.++..+|+..+|...|+++..
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33444667776666666554332334567888899998889999999888888754
No 417
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.15 E-value=48 Score=23.82 Aligned_cols=59 Identities=17% Similarity=0.004 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDS---------------AKGYKIRGMARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a~ 146 (227)
+..+|...++.+++-.++-.|++|+.+-.+- .-.-.++|..+..+|+.+-.+++++-|.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 4567888888899999999999887653211 1245578999999999998898887543
No 418
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.03 E-value=34 Score=28.21 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=65.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPT------------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
+|..+|..++|..-...+.+.-..+.+ -..+|..-...|..+++..+-...|++++.+...-|..++.
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 677777777777666666554433222 14566666778888888888889999999887554432221
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 125 ------RGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 125 ------la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
-|..+.+-|++++|...|-.|++-.
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 3667888999999999998888764
No 419
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.13 E-value=29 Score=30.85 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAA 104 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 104 (227)
++....+|...+.+|+|..+.+++++++-.+|.+..+....+.++-++|--.++
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 456678899999999999999999999999999999999999999888864443
No 420
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=60.09 E-value=1.2e+02 Score=26.61 Aligned_cols=104 Identities=16% Similarity=0.055 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------HH------HHHHHHHH-HHHcCC-----cHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------AI------LYAARAGV-YVKLNK-----PNAAIRD 107 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------~~------~~~~~g~~-~~~~~~-----~~~A~~~ 107 (227)
........|..++..|+|.+|+..|...|..-|-. .. --|-+|.. ...... .+.....
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 44556778999999999999999999998653321 00 11112211 111222 1222233
Q ss_pred HHHHHH-----hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCChH
Q 041967 108 AYVALE-----TNPDSAKGYKIRGMA-RARLGQWEEAANDLHVASKLDYDEE 153 (227)
Q Consensus 108 ~~~al~-----~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~~~ 153 (227)
++-+.= +.|.+...-.+.|+. .++.++|..|....++.+++.|...
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 333321 222222222233333 4577788888888888888887653
No 421
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=60.00 E-value=28 Score=29.59 Aligned_cols=44 Identities=18% Similarity=-0.038 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 100 KPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 100 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
..-+|+..++.++...|.|....+.+..+|..+|-...|...|.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46679999999999999999999999999999999999988876
No 422
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=59.89 E-value=23 Score=18.26 Aligned_cols=11 Identities=18% Similarity=-0.076 Sum_probs=4.2
Q ss_pred cHHHHHHHHHH
Q 041967 101 PNAAIRDAYVA 111 (227)
Q Consensus 101 ~~~A~~~~~~a 111 (227)
..+|+.+++++
T Consensus 21 ~~~A~~~~~~A 31 (36)
T smart00671 21 LEKALEYYKKA 31 (36)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 423
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=59.55 E-value=99 Score=25.45 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=63.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH---HHcCCc----HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 58 AVDLISEGKLEDAIGQLTEAIMLNPT--SAILYAARAGVY---VKLNKP----NAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~---~~~~~~----~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
...++..++|++-...|.+......+ .....|..+... +..... ....+.++.=+...|+...++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 35567778888877777777643222 111112222111 111111 124455555567788888777777776
Q ss_pred HHHcC----------------------CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhH
Q 041967 129 RARLG----------------------QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRI 168 (227)
Q Consensus 129 ~~~~g----------------------~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~ 168 (227)
+.... -.+.|..++.+|+.++|.. .....+-.+....|+.
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 66554 2456778888888888887 4444555555555543
No 424
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=59.10 E-value=22 Score=17.81 Aligned_cols=20 Identities=10% Similarity=-0.084 Sum_probs=9.1
Q ss_pred HHHHHHcCCcHHHHHHHHHH
Q 041967 92 AGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 92 g~~~~~~~~~~~A~~~~~~a 111 (227)
-.+|.+.|++++|...|...
T Consensus 7 i~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444443
No 425
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=59.09 E-value=1.2e+02 Score=26.36 Aligned_cols=97 Identities=12% Similarity=-0.165 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHhC---
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKP-------NAAIRDAYVALETN--- 115 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~--- 115 (227)
.....+|..+|-.|||+-|+..|..+.+-.-.+ +.+.-..|.+.+..+.. +....+++.|+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 567889999999999999999999988743322 23444556666666643 13334444433221
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 116 --------PDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 116 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
.-.....+..+.++...|.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 122456777788888888887776666655544
No 426
>PF13041 PPR_2: PPR repeat family
Probab=59.00 E-value=32 Score=19.58 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=12.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
|...-..+.+.|++++|.++|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33334444444555555555544443
No 427
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=58.96 E-value=26 Score=18.49 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHh
Q 041967 135 WEEAANDLHVASK 147 (227)
Q Consensus 135 ~~~A~~~~~~a~~ 147 (227)
+..|..+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 3445555544443
No 428
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.35 E-value=96 Score=25.70 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=74.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCcHHHHHHHHHHHHhCCCCHHHHHHH--
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVY------VKLNKPNAAIRDAYVALETNPDSAKGYKIR-- 125 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-- 125 (227)
+...-...+....|.--+..-++.++.++.+.+.|..+-.|. .....+....++-..+|..|+-|..+|..+
T Consensus 113 HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~ 192 (328)
T COG5536 113 HRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYI 192 (328)
T ss_pred HHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHH
Confidence 344444445456677777778888888888876666554444 444556667777788899999888877776
Q ss_pred -HHHHHHcCC------HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967 126 -GMARARLGQ------WEEAANDLHVASKLDYDE-EIGMALKKVEPN 164 (227)
Q Consensus 126 -a~~~~~~g~------~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~ 164 (227)
-...+..|+ +++-+.+...++..+|++ .+|..+..+...
T Consensus 193 ~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 193 WIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 444444554 455566777788889988 777666555433
No 429
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=57.85 E-value=82 Score=25.93 Aligned_cols=92 Identities=17% Similarity=0.008 Sum_probs=61.3
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----------HcCCcHHHHHHHHHHHHhCCCCH------HHHHH
Q 041967 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYV----------KLNKPNAAIRDAYVALETNPDSA------KGYKI 124 (227)
Q Consensus 61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~----------~~~~~~~A~~~~~~al~~~p~~~------~~~~~ 124 (227)
++..++.=.|+..|...+.-.|.+..+....+.|.- ..-....|...+..|+-...... -+-++
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~ 84 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFR 84 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhh
Confidence 344556666777788877777776332222222211 12235678888888876643221 26677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 125 RGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 125 la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
++..++.+.+|+-|..+|.+|..+.-++
T Consensus 85 ~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 85 YFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999999886655
No 430
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=57.51 E-value=30 Score=25.57 Aligned_cols=36 Identities=17% Similarity=0.042 Sum_probs=29.4
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967 124 IRGMARARLG-QWEEAANDLHVASKLDYDE-EIGMALK 159 (227)
Q Consensus 124 ~la~~~~~~g-~~~~A~~~~~~a~~~~p~~-~~~~~l~ 159 (227)
.+|..+...| +..+|..+|-+|+.+.|.. +....+.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq 132 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQ 132 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3799999999 9999999999999999986 4443333
No 431
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=57.17 E-value=67 Score=22.77 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=34.9
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967 62 ISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAY 109 (227)
Q Consensus 62 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 109 (227)
...+.+...+.+++..+..++.++.....+..+|.+.+ ..+.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34578999999999999888777777888888876553 455555555
No 432
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.94 E-value=1.3e+02 Score=25.83 Aligned_cols=115 Identities=11% Similarity=-0.001 Sum_probs=73.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH---HhC---------------------------CCC---HHHHHHHHHHHHHcCC
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAI---MLN---------------------------PTS---AILYAARAGVYVKLNK 100 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al---~~~---------------------------p~~---~~~~~~~g~~~~~~~~ 100 (227)
-.+.|..++..++|.+....+..+= +.. |.. ....+.+|.-|+...+
T Consensus 61 ~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD 140 (449)
T COG3014 61 DLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLND 140 (449)
T ss_pred hhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcc
Confidence 3567888888888877666655433 111 111 1234457888888888
Q ss_pred cHHHHHHHHHHHHh------------------------CCCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 041967 101 PNAAIRDAYVALET------------------------NPDSA-----------KGYKIRGMARARLGQWEEAANDLHVA 145 (227)
Q Consensus 101 ~~~A~~~~~~al~~------------------------~p~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~a 145 (227)
++.|+--|+++... +|+.. ..|.++...|....++-.+...|..+
T Consensus 141 ~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~ 220 (449)
T COG3014 141 SAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSG 220 (449)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 88888777776543 22211 14556677777777777888888888
Q ss_pred HhcCCChHHHHHHHHHHHhhhhH
Q 041967 146 SKLDYDEEIGMALKKVEPNARRI 168 (227)
Q Consensus 146 ~~~~p~~~~~~~l~~~~~~~~~~ 168 (227)
+-..|++++...+..+....|-.
T Consensus 221 lf~a~n~dv~kg~~~~~e~~gi~ 243 (449)
T COG3014 221 LFYALNGDVNKGLGYLNEAYGIS 243 (449)
T ss_pred HhcccCccHhHHHHHHHHHhccC
Confidence 88888876665555555444433
No 433
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.11 E-value=36 Score=22.21 Aligned_cols=16 Identities=13% Similarity=0.300 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHhC
Q 041967 66 KLEDAIGQLTEAIMLN 81 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~ 81 (227)
-|+.|..+..+||..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3555555555555544
No 434
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.79 E-value=1.3e+02 Score=25.49 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---H
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK---G 121 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~ 121 (227)
.+++..+|..|.+.||-+.|++.+.+.....-. -.-+...+|..|....-..+-+......++...+|.. .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 456666666666667766666666555443211 1223445555555555555555555555655554431 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 122 YKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 122 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
-..-|.-.....++++|...|..++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 2223444445555666665555555443
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=54.31 E-value=28 Score=17.53 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=9.0
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 041967 91 RAGVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 91 ~g~~~~~~~~~~~A~~~~~~ 110 (227)
+-.++.+.|+++.|...++.
T Consensus 7 ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444443
No 436
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=53.67 E-value=1.6e+02 Score=25.91 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNP----TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA 119 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 119 (227)
....+-..|+..+.|+.|-....++.-... ..+++.|.+|..-.-+++|..|..++-+|+..-|...
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 344555677788889988888777542111 1356788889999999999999999999999999754
No 437
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.31 E-value=1.2e+02 Score=27.98 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=25.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967 60 DLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 111 (227)
..++.|+++.|.....++ ++..-|-.+|.+.+..+++..|.+++.++
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 334445555555543332 33445555666666666666666666554
No 438
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=52.84 E-value=85 Score=22.73 Aligned_cols=42 Identities=14% Similarity=-0.002 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAAR 91 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 91 (227)
..+.++.+-..++.+-+.+.|..+|.+.+...|++..+...+
T Consensus 75 Y~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~ 116 (139)
T PF12583_consen 75 YSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAM 116 (139)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHH
Confidence 345666666667777777777777777777777765544433
No 439
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=52.76 E-value=53 Score=20.21 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHH
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSA------ILYAARAGVYVKLNKPNAAIRD 107 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~g~~~~~~~~~~~A~~~ 107 (227)
+..|..++..|+|=+|.+.++..-...+... -+...-|..+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4567888899999999999988876554332 1222334455566777776654
No 440
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.29 E-value=1.5e+02 Score=25.34 Aligned_cols=94 Identities=23% Similarity=0.186 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------
Q 041967 89 AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD----------------- 151 (227)
Q Consensus 89 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----------------- 151 (227)
+.+-....+-.+...-|+....+++++|....+|..++.-- .--..+|.+.|+++++....
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 33444445667788889999999999999999999887632 22244555555555544221
Q ss_pred ------h---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 152 ------E---EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 152 ------~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+ -+...++.+..++|+..+|.+-++.+.+..+.
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 1 11246677778899999999988888777664
No 441
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=52.09 E-value=1.8e+02 Score=26.08 Aligned_cols=119 Identities=13% Similarity=-0.013 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV-YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
+|...-+.-.+..-...|...|.++-+..-..++.|..-|.. |+..|++.-|...|+-.+...|+.+......-.-+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 444455666666678889999999876542344444433433 4457899999999999999999999887778888889
Q ss_pred cCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHH
Q 041967 132 LGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEH 171 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a 171 (227)
.++-..|...|++++..-.+. .++..+-......|+...+
T Consensus 479 inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 999999999999776543332 3444444444455555433
No 442
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.94 E-value=1.8e+02 Score=26.27 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----AKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
....+.+.......|.++......+..+...|+.+.|+..++..+. +.. .-.++-+|.++.-+.+|.+|..++.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444445555567888888888888888888888888888887776 222 2356778888888888888888887
Q ss_pred HHHhcCC
Q 041967 144 VASKLDY 150 (227)
Q Consensus 144 ~a~~~~p 150 (227)
.......
T Consensus 328 ~L~desd 334 (546)
T KOG3783|consen 328 LLRDESD 334 (546)
T ss_pred HHHhhhh
Confidence 7766543
No 443
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=51.81 E-value=61 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Q 041967 50 AANMTKLKAVDLISEG-KLEDAIGQLTEAIMLNPT 83 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~ 83 (227)
........|..++..| ++.+|..+|-+||..+|.
T Consensus 89 ~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 89 FFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 4556677899999998 899999999999988876
No 444
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=51.58 E-value=99 Score=29.41 Aligned_cols=26 Identities=19% Similarity=-0.022 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~a 111 (227)
-+|-..+.-|...|+|+.|...|..+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhc
Confidence 35556677777788888887777554
No 445
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=50.94 E-value=1.6e+02 Score=27.09 Aligned_cols=84 Identities=11% Similarity=-0.073 Sum_probs=57.3
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHH
Q 041967 92 AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 171 (227)
Q Consensus 92 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a 171 (227)
+..+.+....+.+....+.-+.-........+..+..+...++.+.|..+|++....+|++.-. ....-..+.|-...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 93 (578)
T PRK15490 15 CLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARY-EYARRLYNTGLAKDA 93 (578)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHH-HHHHHHHhhhhhhHH
Confidence 3444455566777777776666666667788889999999999999999999999999986222 222333444544444
Q ss_pred HHHHH
Q 041967 172 RRKYE 176 (227)
Q Consensus 172 ~~~~~ 176 (227)
...++
T Consensus 94 ~~~~~ 98 (578)
T PRK15490 94 QLILK 98 (578)
T ss_pred HHHHH
Confidence 44443
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.67 E-value=1.6e+02 Score=25.30 Aligned_cols=64 Identities=14% Similarity=0.008 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC-HHHHHHHHHHH--HHcCCcHHHHHHHHHHHHh
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML-NPTS-AILYAARAGVY--VKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~-~~~~~~~g~~~--~~~~~~~~A~~~~~~al~~ 114 (227)
.......+..+|+.++|..|...+...... .+.. ...+..++.+| ...-++.+|...++..+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356677888999999999999999998885 3332 23455554444 4567899999999988765
No 447
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=48.52 E-value=56 Score=22.69 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIML 80 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 80 (227)
..+..++..|..++..|+.+.|.-+|.+.+.+
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999888764
No 448
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=47.33 E-value=1.5e+02 Score=24.48 Aligned_cols=68 Identities=16% Similarity=0.052 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------C----------------cHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 69 DAIGQLTEAIMLNPTSAILYAARAGVYVKLN------K----------------PNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 69 ~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~------~----------------~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.-+..++.=++.+|++..++..+|.++.... . .+.|..++.+++.++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3455566666789999888888888776531 1 34688899999999999999999988
Q ss_pred HHHHHcCCHH
Q 041967 127 MARARLGQWE 136 (227)
Q Consensus 127 ~~~~~~g~~~ 136 (227)
.+-...|+..
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 8888888765
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.74 E-value=1.6e+02 Score=23.90 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHh------CCC
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTSAILYAARAGVYVKLNKPN-AAIRDAYVALET------NPD 117 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~g~~~~~~~~~~-~A~~~~~~al~~------~p~ 117 (227)
..+.++.-+..+++.|++.-|.++..-.++. .+.+....-+++.+....+.-+ .-....+.+++- .-.
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 4577888889999999998887776554542 2334555567777777765433 222222333322 124
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 118 SAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 118 ~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
++..+..+|..+.+-|++..|..+|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 57899999999999999999988775
No 450
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=45.99 E-value=41 Score=17.05 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=8.1
Q ss_pred HHHHHHHhCCCCHHHHHHH
Q 041967 107 DAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 107 ~~~~al~~~p~~~~~~~~l 125 (227)
....++..+|.+-.+|..+
T Consensus 5 ~~~~~l~~~pknys~W~yR 23 (31)
T PF01239_consen 5 FTKKALEKDPKNYSAWNYR 23 (31)
T ss_dssp HHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHCcccccHHHHH
Confidence 3344444444444444433
No 451
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.56 E-value=86 Score=21.65 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE 153 (227)
Q Consensus 117 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 153 (227)
--+.++-.+|.+|...|+-+.|.+.|+.=-.+.|...
T Consensus 70 vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 70 VPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 3456777899999999999999999998888888763
No 452
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.97 E-value=1.5e+02 Score=24.99 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHh
Q 041967 68 EDAIGQLTEAIML 80 (227)
Q Consensus 68 ~~A~~~~~~al~~ 80 (227)
++||.+..+|+..
T Consensus 8 ~kaI~lv~kA~~e 20 (439)
T KOG0739|consen 8 QKAIDLVKKAIDE 20 (439)
T ss_pred HHHHHHHHHHhhh
Confidence 4455555555543
No 453
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.65 E-value=4e+02 Score=30.26 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhcCCChHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL----GQ----WEEAANDLHVASKLDYDEEIGM 156 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~----~~~A~~~~~~a~~~~p~~~~~~ 156 (227)
+..+..+|..+.+.|+.++|-+.|..|+.++-.-+++|...|.-.... +. -..|+.+|-+|....-+..+..
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk 2891 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARK 2891 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHH
Confidence 567778888888999999999999999988888888888887754432 11 3457777777777664443333
Q ss_pred HHHHH
Q 041967 157 ALKKV 161 (227)
Q Consensus 157 ~l~~~ 161 (227)
.++++
T Consensus 2892 ~iakv 2896 (3550)
T KOG0889|consen 2892 LIAKV 2896 (3550)
T ss_pred HHHHH
Confidence 33333
No 454
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=43.60 E-value=53 Score=21.41 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=9.3
Q ss_pred CcHHHHHHHHHHHHhC
Q 041967 100 KPNAAIRDAYVALETN 115 (227)
Q Consensus 100 ~~~~A~~~~~~al~~~ 115 (227)
.|+.|....+++|..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3556666666666554
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.28 E-value=90 Score=24.13 Aligned_cols=33 Identities=18% Similarity=-0.003 Sum_probs=15.7
Q ss_pred HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
++.+.|.|++|.+.+++... +|++......|..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~ 152 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLM 152 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHH
Confidence 34445555555555555554 4444444333333
No 456
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.44 E-value=87 Score=19.75 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=6.0
Q ss_pred HHHHHHHHhcCCC
Q 041967 139 ANDLHVASKLDYD 151 (227)
Q Consensus 139 ~~~~~~a~~~~p~ 151 (227)
+..|..++...|+
T Consensus 35 ~e~l~~~~~~~~~ 47 (77)
T smart00745 35 IEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHhccCCC
Confidence 3334444555544
No 457
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=42.33 E-value=66 Score=21.83 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..++..+....+.|+|++|...+.++-+
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567778888888888999988888888754
No 458
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.12 E-value=59 Score=27.85 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNP--------DSAKGYKIRGMARARLGQWEEAAND 141 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~ 141 (227)
+...|.-++.++++++|...|..|..+.. .+..++|.+|..++.+++...++-.
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45578888889999999999999887642 3456899999999999998877643
No 459
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.08 E-value=1.9e+02 Score=23.46 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=49.3
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCC--
Q 041967 62 ISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET-----NPDSAKGYKIRGMARARLGQ-- 134 (227)
Q Consensus 62 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~-- 134 (227)
+++++|++|++++..+. ..+++.|++..|.......++. .|.+....-++..++.....
T Consensus 1 v~~kky~eAidLL~~Ga--------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGA--------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HHTT-HHHHHHHHHHHH--------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred CccccHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 35788899988876643 3333344444333333222221 12333333444444444432
Q ss_pred ------HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 135 ------WEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 135 ------~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
...|++|- +.-...-++ .....++..+.+.+++.+|...+-...
T Consensus 67 p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 67 PERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred chHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 22344444 111111123 556688999999999999888885443
No 460
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.74 E-value=2.1e+02 Score=24.47 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 65 GKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 65 ~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
.=...++...+..... -..+..++..+|..+.+.|...+|...|++++.+.++-....+....
T Consensus 343 ~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 343 EGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred hhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3355566655554432 12245677889999999999999999999999999888776555443
No 461
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=41.73 E-value=1.6e+02 Score=25.08 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 041967 71 IGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET----NPDSAKGYKIRGMARARLGQWEEAANDLHVA 145 (227)
Q Consensus 71 ~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 145 (227)
+.++++--...|.....++..+...+..|+|..|-.++-....+ ++++..+++..--.-.-+.+++.|++.+.+.
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 462
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.71 E-value=1.1e+02 Score=20.89 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 89 AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 89 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 133 (227)
...|...+-.|++..|.+.+.++-+..+..+-.|..-+.+-..+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344555556666666666666665443333333333344433333
No 463
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.35 E-value=2e+02 Score=24.41 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...+...=+.++|.+|+.+|+.+++
T Consensus 9 kaI~lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 9 KAIDLVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHHHHhhhcchhchHHHHHHHHHHHH
Confidence 456677777777778899999999988876
No 464
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.12 E-value=2.4e+02 Score=24.44 Aligned_cols=58 Identities=12% Similarity=-0.099 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH--HcCCcHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-----SAILYAARAGVYV--KLNKPNAAIRDAY 109 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~g~~~~--~~~~~~~A~~~~~ 109 (227)
......+..+++.++|..|...|.+++...+. ....+..++.+|. ..=++++|...++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34455677899999999999999999986542 1334555555554 4668889999888
No 465
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=41.01 E-value=58 Score=17.53 Aligned_cols=13 Identities=31% Similarity=-0.100 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHcC
Q 041967 87 LYAARAGVYVKLN 99 (227)
Q Consensus 87 ~~~~~g~~~~~~~ 99 (227)
..+++|.++.+..
T Consensus 3 t~FnyAw~Lv~S~ 15 (35)
T PF14852_consen 3 TQFNYAWGLVKSN 15 (35)
T ss_dssp HHHHHHHHHHHSS
T ss_pred chhHHHHHHhcCC
Confidence 3445555555544
No 466
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=40.99 E-value=71 Score=21.78 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..++..+....+.|+|++|...+.++-+
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777888888888888888888877744
No 467
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.89 E-value=2.2e+02 Score=23.93 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=67.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE 137 (227)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 137 (227)
-..++..|+...|..+-.+ ++. .+-.+|+....++...++|++-...... -..|-+|--...++...|...+
T Consensus 184 i~~li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHH
Confidence 3445667887777776443 333 2467788888888899999875544321 2345567777777888888888
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 138 AANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 138 A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
|..+..+ +.+ .. ....+...|.+.+|....-+.
T Consensus 256 A~~yI~k---~~~-~~----rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPK---IPD-EE----RVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHh---CCh-HH----HHHHHHHCCCHHHHHHHHHHc
Confidence 8888887 322 21 223335667777776655333
No 468
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=2.3e+02 Score=24.16 Aligned_cols=85 Identities=9% Similarity=0.080 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHh-----CCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHH-------hCCCCHHHHHHH-HHH
Q 041967 64 EGKLEDAIGQLTEAIML-----NPTSAI--LYAARAGVYVKLNKPNAAIRDAYVALE-------TNPDSAKGYKIR-GMA 128 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l-a~~ 128 (227)
.++.++|++++++.++. .| ++. .....|.+++..|+..++...+...-+ ..|.-...||.+ ...
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~-~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEP-DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 45899999999998863 22 222 455678899999999988887776654 223112233444 455
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 041967 129 RARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~ 149 (227)
|...|++....++..+.+...
T Consensus 167 yk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 167 YKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHHHhHHHHHHHHHHHhccc
Confidence 667888888777666666554
No 469
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=40.40 E-value=1.3e+02 Score=24.17 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=19.6
Q ss_pred HHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHc-CCcHHHHHHHHHHH
Q 041967 69 DAIGQLTEAIM-----LNPTSAI---LYAARAGVYVKL-NKPNAAIRDAYVAL 112 (227)
Q Consensus 69 ~A~~~~~~al~-----~~p~~~~---~~~~~g~~~~~~-~~~~~A~~~~~~al 112 (227)
.|...|+.|+. +.|.+|. ...|.+.+|+.. ++.++|+....+++
T Consensus 146 ~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 146 NTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555543 2344432 233344444443 45555554444443
No 470
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.17 E-value=97 Score=19.64 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=5.2
Q ss_pred HHHHHHHhcCCC
Q 041967 140 NDLHVASKLDYD 151 (227)
Q Consensus 140 ~~~~~a~~~~p~ 151 (227)
..|..+++..|+
T Consensus 34 e~l~~~~k~e~~ 45 (75)
T cd02678 34 EYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHhhCCC
Confidence 334444444443
No 471
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=39.92 E-value=75 Score=21.89 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..++..+..+.+.|+|++|...+.+|-+
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777888888888898888888887754
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.92 E-value=2.3e+02 Score=23.84 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhC-CCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HH---HHHHHHHHHHHcCCH
Q 041967 68 EDAIGQLTEAIMLN-PTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AK---GYKIRGMARARLGQW 135 (227)
Q Consensus 68 ~~A~~~~~~al~~~-p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~---~~~~la~~~~~~g~~ 135 (227)
++-++.+++.|... .++ ..++.++|..|.+.++.+.+.+++.+.++-.-.. .+ ...++|.+|..+.-.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 44455565555421 122 5689999999999999999988888776543211 12 344566666555555
Q ss_pred HHHHHHHHHHHhcC
Q 041967 136 EEAANDLHVASKLD 149 (227)
Q Consensus 136 ~~A~~~~~~a~~~~ 149 (227)
++.++...-.++..
T Consensus 172 ~e~lE~~~~~iEkG 185 (412)
T COG5187 172 EESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHhC
Confidence 55555444444443
No 473
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=39.70 E-value=82 Score=21.31 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..++..+....+.|+|++|...+.++-+
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567777888888888888888888887743
No 474
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.17 E-value=1e+02 Score=28.76 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHcCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 96 VKLNKPNAAIRDAYVALETNPDS-AKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 96 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
...+++.+|....++ .|.. +.+|+..|.-+....++.+|.+.|.+|=+.
T Consensus 784 ve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred eecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 334555555444332 2333 347777788888888888888877776443
No 475
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=39.01 E-value=1.4e+02 Score=21.09 Aligned_cols=49 Identities=16% Similarity=0.016 Sum_probs=37.8
Q ss_pred HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
.+...+.+...+.+++.++..++.++..+..+..+|...+ ....+..+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 3345678999999999999998888888888999888664 345555555
No 476
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.51 E-value=3e+02 Score=25.66 Aligned_cols=83 Identities=17% Similarity=0.047 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....|..+|...+..+++..|.+++.++-... .+-.++-..|+-+.-......+-+....|. + -.+|
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-A----F~~~ 731 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGLAVLASLAKKQGKNNL-A----FLAY 731 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHHHHHHHHHhhcccch-H----HHHH
Confidence 44578888888888888888888887775432 122333445554432222222222222222 1 2457
Q ss_pred HHcCCHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVA 145 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a 145 (227)
...|++++++..+...
T Consensus 732 ~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 732 FLSGDYEECLELLIST 747 (794)
T ss_pred HHcCCHHHHHHHHHhc
Confidence 7788888777665543
No 477
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.51 E-value=2.6e+02 Score=24.06 Aligned_cols=76 Identities=8% Similarity=0.004 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCCH-HHH--HHHHHHHHHcCCcHHHHHHHHHH---HHhCCCC----------------------------
Q 041967 73 QLTEAIMLNPTSA-ILY--AARAGVYVKLNKPNAAIRDAYVA---LETNPDS---------------------------- 118 (227)
Q Consensus 73 ~~~~al~~~p~~~-~~~--~~~g~~~~~~~~~~~A~~~~~~a---l~~~p~~---------------------------- 118 (227)
.|++++..-|+.. ..+ .+-|.+++..++|.+....+.-+ .+.+.+.
T Consensus 43 ~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~Y 122 (449)
T COG3014 43 AYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIY 122 (449)
T ss_pred HHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhH
Confidence 3445554444432 233 34588888889988876666543 3322110
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 119 --AKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
.-..+.+|.-|...++++.|...|.++...
T Consensus 123 E~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 123 EGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 114556777778888888888777776543
No 478
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.14 E-value=2.4e+02 Score=24.24 Aligned_cols=96 Identities=16% Similarity=0.057 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH--HHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA--KGYKIRGM 127 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~ 127 (227)
.....|-.++..-+|.+|..+++..+...-. ....+..+.........+........... ..+... .-++..|.
T Consensus 171 ~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~dLl~NA~ 249 (379)
T PF09670_consen 171 KDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQ-KKLYYALLADLLANAE 249 (379)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccc-cccHHHHHHHHHHHHH
Confidence 4455677778888999999999987764211 11222222222111111111111111100 000011 12222333
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 041967 128 ARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
=-...|+|++|+..+-+++++-
T Consensus 250 RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 250 RRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHHH
Confidence 3446889999999998888763
No 479
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.69 E-value=2.6e+02 Score=23.89 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 150 (227)
++|+-+|.++...|.+++.+..|++|+..+.
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Confidence 3444445555555555445555555554443
No 480
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.01 E-value=1.2e+02 Score=25.10 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHH
Q 041967 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKL--NKPNAAIRDAYVALETNPDSAKGYKIRGMAR------ARLGQWEEA 138 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A 138 (227)
++.-+..+..+++-+|.+..+|.-+-.++-.. .++..-+...+..+..+|.|-.+|..+-.++ ....++...
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 46667778889999999999998887777665 6788888899999999999988877655554 333344444
Q ss_pred HHHHHHHHhcCCCh-HHHHHH
Q 041967 139 ANDLHVASKLDYDE-EIGMAL 158 (227)
Q Consensus 139 ~~~~~~a~~~~p~~-~~~~~l 158 (227)
.++-..++..++.| .+|...
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHH
Confidence 55555667778887 666544
No 481
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.41 E-value=3.1e+02 Score=26.49 Aligned_cols=57 Identities=12% Similarity=-0.018 Sum_probs=42.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
.-..++++.-|.-|+...+. ...+++. ..+....|..++..|++++|...|-+.|..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 44667778888888886554 2334432 346777899999999999999999888753
No 482
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.02 E-value=1.9e+02 Score=24.22 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIML------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET-----NPDSAKGYKIR 125 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l 125 (227)
+...+++.|+|.+|+....-.+.- .|.-...+..-..+|....+..++..-+..|-.. .|....+-.-+
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHh
Q 041967 126 --GMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 126 --a~~~~~~g~~~~A~~~~~~a~~ 147 (227)
|..++.-.+|.-|-.+|-.+++
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hccceeeccccchhHHHHHHHHHh
No 483
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=35.70 E-value=97 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967 101 PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134 (227)
Q Consensus 101 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 134 (227)
+..|+.++++|.. .+.|..|..+|.++..+|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 4456666666654 4566677777777777764
No 484
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=35.40 E-value=93 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..++..|....+.|+|++|...+.+|-+
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566777788888888888888888887754
No 485
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.32 E-value=1.8e+02 Score=21.26 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI 86 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 86 (227)
.......+|..++.+|+++++..++-.||..+|.-..
T Consensus 80 ~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq 116 (143)
T KOG4056|consen 80 FFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQ 116 (143)
T ss_pred HHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence 4456678999999999999999999999998887544
No 486
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.72 E-value=2.9e+02 Score=23.52 Aligned_cols=79 Identities=19% Similarity=0.072 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHH--HHhCCCCHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT--------SAILYAARAGVYVKLNKPNAAIRDAYVA--LETNPDSAK 120 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~a--l~~~p~~~~ 120 (227)
+-....+|..|-+.++|..|-..+.- +.++.. -...+..+|..|+..++..+|..+..++ +..+..|..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 34456677777788888777665532 333221 1235566677777777766666666554 333445554
Q ss_pred HHHHHHHHHH
Q 041967 121 GYKIRGMARA 130 (227)
Q Consensus 121 ~~~~la~~~~ 130 (227)
....+-.||.
T Consensus 182 Lqie~kvc~A 191 (399)
T KOG1497|consen 182 LQIEYKVCYA 191 (399)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 487
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=34.55 E-value=1e+02 Score=19.76 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEA 77 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 77 (227)
.+.+..|+.-|..++.+|++..|+.++.=+
T Consensus 32 ~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 32 LEMAESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 467899999999999999999999887543
No 488
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=34.37 E-value=2.1e+02 Score=21.83 Aligned_cols=99 Identities=17% Similarity=0.072 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH----h----CCCCHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALE----T----NPDSAKGY 122 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~----~p~~~~~~ 122 (227)
++.+.-..-+..|.|.+|..++.+.++.... ...+|..+++|.+-..+-.--+++=++.++ . -|-+..+-
T Consensus 95 A~leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAt 174 (220)
T PF10858_consen 95 AALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATAT 174 (220)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHH
Confidence 4445555667789999999999999875433 356888888888877654433333333332 2 24455666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
...+..-...|.-.+|.+.++..+..+..
T Consensus 175 I~kaiwdik~nm~~~aeknL~~l~~Snn~ 203 (220)
T PF10858_consen 175 IIKAIWDIKNNMKNQAEKNLKNLLASNNV 203 (220)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhcch
Confidence 67777778888888999999888876543
No 489
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=34.31 E-value=1.8e+02 Score=21.08 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=25.2
Q ss_pred HHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 96 VKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 96 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
+..-+.+.|.+.|+.++..+|++..++..+-..+-.
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 334456888999999999999999888777665543
No 490
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.15 E-value=1.2e+02 Score=22.15 Aligned_cols=29 Identities=24% Similarity=0.051 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+|..|...|+++++..++-.|+.+.|..
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 37999999999999999999999998875
No 491
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.81 E-value=4.7e+02 Score=25.68 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHH----------c--CCcHHH--
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----------SAILYAARAGVYVK----------L--NKPNAA-- 104 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~g~~~~~----------~--~~~~~A-- 104 (227)
+....-...|-.+...|+|.+|++.|...|-.-|- .+.-+...+.-|.- + +..+.+
T Consensus 989 ~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~E 1068 (1202)
T KOG0292|consen 989 SQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLE 1068 (1202)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHH
Confidence 34566678889999999999999999999865442 12233333322211 1 222333
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 041967 105 IRDAYVALETNPDSAK-GYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGM 156 (227)
Q Consensus 105 ~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 156 (227)
+..|=.-..+.|-+.- ++..--.+.++++++..|-....+.+++.|..++..
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 1111111233343332 333334467788889888888888888888764443
No 492
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.56 E-value=1.3e+02 Score=19.20 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=5.4
Q ss_pred HHHHHHHHhcCCC
Q 041967 139 ANDLHVASKLDYD 151 (227)
Q Consensus 139 ~~~~~~a~~~~p~ 151 (227)
+..|..+++..++
T Consensus 33 le~~~~~~k~e~~ 45 (75)
T cd02684 33 LQYFVPALHYETD 45 (75)
T ss_pred HHHHHHHHhhCCC
Confidence 3334444444443
No 493
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.25 E-value=3.3e+02 Score=27.48 Aligned_cols=113 Identities=17% Similarity=0.099 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------------C----HHHHHHHHHHHHHcCCcHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-------------------------S----AILYAARAGVYVKLNKPNA 103 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------------------------~----~~~~~~~g~~~~~~~~~~~ 103 (227)
.-+..|..++..|...+|+.+|.+|..--.. . .++|..--..+-..+..+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 4466788889999999999999998842111 1 1233333344444567778
Q ss_pred HHHHHHHHHHhCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH----HHHHHHHHHhhhhHH
Q 041967 104 AIRDAYVALETNPDS-A---KGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI----GMALKKVEPNARRIQ 169 (227)
Q Consensus 104 A~~~~~~al~~~p~~-~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~----~~~l~~~~~~~~~~~ 169 (227)
+++....||+.-|+. + ..+...-.-+..+|.+.+|.+ |+-.+|+.+. ...+-.+....|+++
T Consensus 1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~----ai~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYK----AILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHH----HHHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 888888888765443 2 344445556677777777754 4555676422 334555555555544
No 494
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.39 E-value=3.1e+02 Score=23.11 Aligned_cols=103 Identities=10% Similarity=-0.033 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH--
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK-- 120 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 120 (227)
..++++.++|..|.+.++.+.+.+...+.+...-. -.-....+|.+|-.+.-..+.++.....++...++..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 45789999999999999999998888777654321 1234556777776666678888888888888777642
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 121 -GYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 121 -~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
.-...|.-.....++++|...+..++.....
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 3334566666777888888877777655443
No 495
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.00 E-value=6.1e+02 Score=27.77 Aligned_cols=64 Identities=13% Similarity=-0.089 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
....|.+.|.+....|+++.|...+-.|.+.. -+.++...|..+-..|+-..|+..+++.+..+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46799999999999999999999998888876 67789999999999999999999999999553
No 496
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.18 E-value=1.4e+02 Score=18.75 Aligned_cols=10 Identities=30% Similarity=0.209 Sum_probs=4.3
Q ss_pred HHHHHhcCCC
Q 041967 142 LHVASKLDYD 151 (227)
Q Consensus 142 ~~~a~~~~p~ 151 (227)
|..++...|+
T Consensus 36 l~~~~~~~~~ 45 (75)
T cd02656 36 LLQALKAEKE 45 (75)
T ss_pred HHHHhccCCC
Confidence 4444444443
No 497
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=30.64 E-value=71 Score=27.67 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK 100 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 100 (227)
...|+.++.+|.. .++|..|.++|.++..+|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 4567777777765 4467788888888877765
No 498
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=30.56 E-value=1.8e+02 Score=25.15 Aligned_cols=62 Identities=16% Similarity=-0.050 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh-CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 90 ARAGVYVKLNKPNAAIRDAYVALET-NPDS--------AKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 90 ~~g~~~~~~~~~~~A~~~~~~al~~-~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
.+-..|++++++.-+...++..... -|+. ...+|.+|.+|.-..++.+|.-++..|+...|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 4567788899988776655433221 1232 247889999999999999999999999999887
No 499
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=30.34 E-value=1.4e+02 Score=25.31 Aligned_cols=41 Identities=29% Similarity=0.239 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYA 89 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 89 (227)
..+..++..|...-+.|..-+|+..|..|+.+.|+-...+.
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 36889999999999999999999999999999987555444
No 500
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.88 E-value=3.6e+02 Score=23.10 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Q 041967 52 NMTKLKAVDLISEGKL-EDAIGQLTEAIMLNPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 117 (227)
..-+..-..++..|-. ++.+..+...|..=|+ .+-+|.-+|.++-..|.++..+..|+.|+.....
T Consensus 103 n~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 103 NKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 3445555667778865 5777788888887776 4678999999999999999999999999988765
Done!