Query 041967
Match_columns 227
No_of_seqs 184 out of 2121
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.9 4.4E-22 1.5E-26 143.0 16.9 115 47-161 9-124 (126)
2 3gyz_A Chaperone protein IPGC; 99.8 1.2E-19 4.2E-24 134.3 17.1 108 46-153 31-138 (151)
3 4gcn_A Protein STI-1; structur 99.8 3.2E-19 1.1E-23 128.0 15.5 112 48-159 5-123 (127)
4 3upv_A Heat shock protein STI1 99.8 6.8E-19 2.3E-23 125.2 16.3 113 50-162 3-122 (126)
5 4ga2_A E3 SUMO-protein ligase 99.8 2.8E-19 9.6E-24 131.9 14.0 120 47-166 27-148 (150)
6 4gyw_A UDP-N-acetylglucosamine 99.8 5.9E-19 2E-23 160.3 18.6 137 48-184 6-143 (723)
7 2pl2_A Hypothetical conserved 99.8 8E-19 2.7E-23 137.0 16.4 133 50-182 4-148 (217)
8 3rkv_A Putative peptidylprolyl 99.8 1.2E-18 4.1E-23 129.5 14.0 117 49-165 9-145 (162)
9 3vtx_A MAMA; tetratricopeptide 99.8 5.5E-18 1.9E-22 127.9 17.8 135 50-184 4-139 (184)
10 2hr2_A Hypothetical protein; a 99.8 7.8E-19 2.7E-23 130.0 12.0 111 48-158 8-142 (159)
11 2xcb_A PCRH, regulatory protei 99.8 4.7E-18 1.6E-22 123.8 15.9 106 47-152 14-119 (142)
12 3sz7_A HSC70 cochaperone (SGT) 99.8 4.7E-18 1.6E-22 126.5 15.7 104 49-152 9-112 (164)
13 2pl2_A Hypothetical conserved 99.8 8.1E-18 2.8E-22 131.3 17.2 135 49-184 37-183 (217)
14 1p5q_A FKBP52, FK506-binding p 99.8 3.1E-17 1.1E-21 136.4 21.5 136 45-180 141-293 (336)
15 4ga2_A E3 SUMO-protein ligase 99.8 1.8E-19 6.2E-24 132.9 7.0 128 57-184 3-132 (150)
16 2vgx_A Chaperone SYCD; alterna 99.8 4.8E-18 1.6E-22 125.0 14.7 106 47-152 17-122 (148)
17 1a17_A Serine/threonine protei 99.8 1.1E-16 3.9E-21 117.9 21.6 134 46-179 8-144 (166)
18 2h6f_A Protein farnesyltransfe 99.8 5.4E-18 1.9E-22 143.5 15.8 138 47-184 93-232 (382)
19 3urz_A Uncharacterized protein 99.8 1.7E-17 6E-22 128.5 17.4 118 50-167 3-137 (208)
20 4gyw_A UDP-N-acetylglucosamine 99.8 1.3E-17 4.4E-22 151.5 18.4 136 49-184 41-177 (723)
21 3vtx_A MAMA; tetratricopeptide 99.8 3.8E-17 1.3E-21 123.3 18.0 137 48-184 36-173 (184)
22 4i17_A Hypothetical protein; T 99.8 4.3E-17 1.5E-21 127.2 17.7 134 51-184 7-149 (228)
23 4i17_A Hypothetical protein; T 99.8 7.8E-17 2.7E-21 125.8 18.7 119 50-168 41-169 (228)
24 3q49_B STIP1 homology and U bo 99.8 5.4E-17 1.8E-21 116.4 16.3 114 50-163 8-127 (137)
25 2fbn_A 70 kDa peptidylprolyl i 99.8 9.3E-17 3.2E-21 123.1 17.6 128 45-172 32-176 (198)
26 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 7E-17 2.4E-21 139.7 18.8 131 45-175 262-408 (457)
27 2vyi_A SGTA protein; chaperone 99.7 2.7E-16 9.1E-21 110.8 18.1 122 46-167 7-129 (131)
28 1hxi_A PEX5, peroxisome target 99.7 4E-17 1.4E-21 116.0 12.9 101 52-152 18-118 (121)
29 2lni_A Stress-induced-phosphop 99.7 1.3E-16 4.5E-21 113.2 15.6 117 50-166 15-132 (133)
30 1elw_A TPR1-domain of HOP; HOP 99.7 4.4E-16 1.5E-20 107.8 17.1 112 50-161 3-115 (118)
31 2h6f_A Protein farnesyltransfe 99.7 3E-17 1E-21 139.0 13.1 136 49-184 129-272 (382)
32 3gyz_A Chaperone protein IPGC; 99.7 1.1E-17 3.6E-22 123.8 9.0 113 72-184 23-136 (151)
33 4gco_A Protein STI-1; structur 99.7 1.2E-16 4.1E-21 114.4 12.6 109 76-184 4-113 (126)
34 2fo7_A Synthetic consensus TPR 99.7 8.1E-16 2.8E-20 108.5 16.6 130 52-181 2-132 (136)
35 3as5_A MAMA; tetratricopeptide 99.7 2.7E-15 9.1E-20 111.8 19.7 133 51-183 42-175 (186)
36 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.3E-15 7.8E-20 119.6 20.1 134 48-181 40-173 (275)
37 1ihg_A Cyclophilin 40; ppiase 99.7 4.4E-16 1.5E-20 131.3 16.7 128 47-174 219-363 (370)
38 3qky_A Outer membrane assembly 99.7 5.5E-16 1.9E-20 123.6 15.9 134 50-183 14-179 (261)
39 3urz_A Uncharacterized protein 99.7 1.2E-15 3.9E-20 118.2 16.9 128 57-184 60-189 (208)
40 3uq3_A Heat shock protein STI1 99.7 2.5E-15 8.7E-20 118.0 18.9 133 51-183 79-238 (258)
41 2xev_A YBGF; tetratricopeptide 99.7 1E-15 3.4E-20 108.5 14.8 102 52-153 3-110 (129)
42 2dba_A Smooth muscle cell asso 99.7 8.8E-16 3E-20 111.0 14.8 113 50-162 27-143 (148)
43 1elr_A TPR2A-domain of HOP; HO 99.7 1.1E-15 3.9E-20 107.7 15.0 117 50-166 3-126 (131)
44 1na0_A Designed protein CTPR3; 99.7 4.3E-15 1.5E-19 103.6 17.5 115 50-164 8-123 (125)
45 2vgx_A Chaperone SYCD; alterna 99.7 2.5E-16 8.7E-21 115.7 10.6 115 70-184 6-121 (148)
46 2vq2_A PILW, putative fimbrial 99.7 5E-15 1.7E-19 113.9 18.3 132 50-181 7-142 (225)
47 2if4_A ATFKBP42; FKBP-like, al 99.7 1.5E-16 5.3E-21 132.4 10.2 139 45-183 173-330 (338)
48 2q7f_A YRRB protein; TPR, prot 99.7 3.3E-15 1.1E-19 116.6 16.7 135 49-183 55-190 (243)
49 3as5_A MAMA; tetratricopeptide 99.7 4.6E-15 1.6E-19 110.5 16.6 135 50-184 7-142 (186)
50 3ieg_A DNAJ homolog subfamily 99.7 5.8E-15 2E-19 121.1 18.3 134 50-183 2-151 (359)
51 2vsy_A XCC0866; transferase, g 99.7 2.5E-15 8.5E-20 132.8 17.1 137 48-184 20-160 (568)
52 1hh8_A P67PHOX, NCF-2, neutrop 99.7 6.7E-15 2.3E-19 113.2 17.4 131 50-183 5-152 (213)
53 2q7f_A YRRB protein; TPR, prot 99.7 6.5E-15 2.2E-19 114.9 16.9 135 50-184 90-225 (243)
54 4abn_A Tetratricopeptide repea 99.7 1.5E-15 5.2E-20 131.8 14.6 133 50-183 101-252 (474)
55 3qky_A Outer membrane assembly 99.7 4.6E-15 1.6E-19 118.2 16.2 134 51-184 52-227 (261)
56 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.7E-15 1.3E-19 116.5 15.2 134 51-184 4-179 (225)
57 4abn_A Tetratricopeptide repea 99.7 4.2E-15 1.4E-19 129.1 16.9 135 49-184 135-290 (474)
58 2ho1_A Type 4 fimbrial biogene 99.7 1.3E-14 4.6E-19 114.1 18.4 134 50-183 36-172 (252)
59 1w3b_A UDP-N-acetylglucosamine 99.6 4.6E-15 1.6E-19 124.3 16.4 134 50-183 66-200 (388)
60 2vq2_A PILW, putative fimbrial 99.6 1.7E-14 5.8E-19 110.9 18.4 134 50-183 41-178 (225)
61 3uq3_A Heat shock protein STI1 99.6 5.7E-15 1.9E-19 115.9 15.7 130 52-181 39-202 (258)
62 1w3b_A UDP-N-acetylglucosamine 99.6 1.3E-14 4.3E-19 121.6 18.3 134 50-183 168-302 (388)
63 4eqf_A PEX5-related protein; a 99.6 3.8E-15 1.3E-19 123.7 14.9 130 55-184 181-313 (365)
64 2xcb_A PCRH, regulatory protei 99.6 1.9E-15 6.5E-20 109.8 11.4 113 72-184 5-118 (142)
65 2e2e_A Formate-dependent nitri 99.6 1.2E-15 4E-20 114.5 10.6 104 49-152 42-148 (177)
66 3u4t_A TPR repeat-containing p 99.6 2.9E-15 9.8E-20 119.1 12.7 133 51-184 37-174 (272)
67 2ho1_A Type 4 fimbrial biogene 99.6 3.7E-14 1.3E-18 111.5 18.6 135 49-183 69-206 (252)
68 4eqf_A PEX5-related protein; a 99.6 1.6E-14 5.5E-19 119.9 17.3 131 51-181 99-276 (365)
69 2pzi_A Probable serine/threoni 99.6 1.7E-15 5.7E-20 137.1 12.2 133 50-183 432-565 (681)
70 2kck_A TPR repeat; tetratricop 99.6 3.2E-15 1.1E-19 102.5 10.5 102 51-152 6-110 (112)
71 3hym_B Cell division cycle pro 99.6 2.5E-14 8.6E-19 116.2 17.5 133 50-182 89-223 (330)
72 1zu2_A Mitochondrial import re 99.6 1.9E-15 6.4E-20 111.6 9.7 92 63-154 14-126 (158)
73 1wao_1 Serine/threonine protei 99.6 6.9E-16 2.4E-20 134.2 8.4 128 49-176 4-134 (477)
74 2e2e_A Formate-dependent nitri 99.6 3.4E-14 1.1E-18 106.5 16.6 124 61-184 20-147 (177)
75 2y4t_A DNAJ homolog subfamily 99.6 4.4E-14 1.5E-18 120.1 19.1 137 47-183 22-174 (450)
76 1fch_A Peroxisomal targeting s 99.6 1.4E-14 5E-19 119.8 15.6 128 56-184 187-317 (368)
77 2c2l_A CHIP, carboxy terminus 99.6 5.9E-15 2E-19 119.6 12.7 103 50-152 3-105 (281)
78 3cv0_A Peroxisome targeting si 99.6 2.7E-14 9.4E-19 115.9 16.3 129 51-179 172-313 (327)
79 3k9i_A BH0479 protein; putativ 99.6 1.1E-15 3.7E-20 107.5 6.8 91 63-153 2-95 (117)
80 2yhc_A BAMD, UPF0169 lipoprote 99.6 3.3E-14 1.1E-18 111.1 15.8 131 51-181 41-213 (225)
81 2r5s_A Uncharacterized protein 99.6 2.1E-14 7.2E-19 107.9 13.2 131 48-179 37-171 (176)
82 1fch_A Peroxisomal targeting s 99.6 1.9E-13 6.4E-18 113.1 20.2 134 50-184 97-283 (368)
83 3u4t_A TPR repeat-containing p 99.6 2.6E-14 8.8E-19 113.6 14.2 132 51-182 74-209 (272)
84 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.1E-14 1.7E-18 108.2 15.1 102 51-152 37-154 (213)
85 3hym_B Cell division cycle pro 99.6 7.2E-14 2.5E-18 113.5 16.6 131 53-183 58-190 (330)
86 3upv_A Heat shock protein STI1 99.6 7.3E-14 2.5E-18 98.9 14.2 101 82-182 1-102 (126)
87 3qou_A Protein YBBN; thioredox 99.6 2.4E-14 8.2E-19 116.3 13.1 136 49-184 115-251 (287)
88 3fp2_A TPR repeat-containing p 99.6 8.7E-14 3E-18 120.8 16.9 129 51-180 243-372 (537)
89 2gw1_A Mitochondrial precursor 99.6 2.6E-13 8.7E-18 116.9 19.5 103 48-151 3-105 (514)
90 2pzi_A Probable serine/threoni 99.6 8.7E-15 3E-19 132.4 10.6 117 49-166 465-582 (681)
91 2r5s_A Uncharacterized protein 99.6 4.6E-15 1.6E-19 111.6 7.2 132 51-183 6-139 (176)
92 3mkr_A Coatomer subunit epsilo 99.6 2.4E-13 8.2E-18 110.7 17.7 135 50-184 129-267 (291)
93 3ieg_A DNAJ homolog subfamily 99.6 1.4E-13 4.8E-18 112.8 16.4 132 52-183 72-219 (359)
94 3edt_B KLC 2, kinesin light ch 99.6 9.2E-14 3.1E-18 110.2 14.3 136 48-183 40-200 (283)
95 1qqe_A Vesicular transport pro 99.6 5.1E-14 1.8E-18 114.4 13.0 134 50-183 76-230 (292)
96 3cv0_A Peroxisome targeting si 99.5 1.4E-13 4.7E-18 111.7 15.1 134 50-183 20-169 (327)
97 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.8E-14 2E-18 111.4 12.2 123 62-184 16-143 (275)
98 2y4t_A DNAJ homolog subfamily 99.5 3.6E-13 1.2E-17 114.4 17.7 132 53-184 145-289 (450)
99 2gw1_A Mitochondrial precursor 99.5 1.7E-13 5.9E-18 118.0 15.6 129 52-180 305-443 (514)
100 3fp2_A TPR repeat-containing p 99.5 3.5E-13 1.2E-17 116.9 17.5 134 51-184 276-410 (537)
101 2l6j_A TPR repeat-containing p 99.5 1.6E-14 5.4E-19 99.5 7.2 95 50-144 3-103 (111)
102 3q49_B STIP1 homology and U bo 99.5 5.3E-13 1.8E-17 95.3 15.2 106 79-184 3-109 (137)
103 2xpi_A Anaphase-promoting comp 99.5 6.3E-13 2.1E-17 117.0 18.4 134 50-183 406-547 (597)
104 2xpi_A Anaphase-promoting comp 99.5 7.7E-13 2.6E-17 116.4 18.8 133 50-182 372-505 (597)
105 4gcn_A Protein STI-1; structur 99.5 2.5E-13 8.4E-18 97.0 12.4 100 84-183 7-114 (127)
106 1hxi_A PEX5, peroxisome target 99.5 3.7E-13 1.3E-17 95.3 13.2 98 87-184 19-117 (121)
107 3sz7_A HSC70 cochaperone (SGT) 99.5 3.3E-13 1.1E-17 100.0 13.3 104 81-184 7-111 (164)
108 2vsy_A XCC0866; transferase, g 99.5 1.5E-13 5.2E-18 121.4 13.2 121 64-184 2-123 (568)
109 2fo7_A Synthetic consensus TPR 99.5 8.4E-13 2.9E-17 92.8 14.0 102 50-151 34-135 (136)
110 2kat_A Uncharacterized protein 99.5 3.8E-13 1.3E-17 93.7 12.0 85 68-152 2-86 (115)
111 3qou_A Protein YBBN; thioredox 99.5 2.2E-13 7.7E-18 110.5 12.4 132 49-180 149-283 (287)
112 2ond_A Cleavage stimulation fa 99.5 4.8E-13 1.7E-17 109.3 14.5 133 49-181 97-232 (308)
113 3edt_B KLC 2, kinesin light ch 99.5 3.2E-13 1.1E-17 107.0 12.7 133 48-180 82-280 (283)
114 2ond_A Cleavage stimulation fa 99.5 1.5E-12 5.1E-17 106.4 15.9 137 48-184 47-201 (308)
115 1na3_A Designed protein CTPR2; 99.5 1.1E-12 3.9E-17 86.8 12.5 85 49-133 7-91 (91)
116 1ouv_A Conserved hypothetical 99.5 5.2E-12 1.8E-16 100.8 18.4 124 51-179 6-141 (273)
117 2qfc_A PLCR protein; TPR, HTH, 99.5 6.4E-12 2.2E-16 101.8 19.1 137 45-181 69-225 (293)
118 3nf1_A KLC 1, kinesin light ch 99.5 5.6E-13 1.9E-17 107.3 12.6 136 46-181 22-182 (311)
119 1qqe_A Vesicular transport pro 99.5 8.6E-13 3E-17 107.1 13.2 134 50-183 36-189 (292)
120 3ulq_A Response regulator aspa 99.5 1.6E-12 5.4E-17 109.0 15.1 136 48-183 140-295 (383)
121 2hr2_A Hypothetical protein; a 99.5 2.1E-12 7E-17 95.5 13.7 101 85-185 11-135 (159)
122 2kck_A TPR repeat; tetratricop 99.5 4.6E-13 1.6E-17 91.6 9.5 102 80-181 1-106 (112)
123 3mkr_A Coatomer subunit epsilo 99.4 5.2E-12 1.8E-16 102.8 16.6 129 50-183 100-231 (291)
124 4a1s_A PINS, partner of inscut 99.4 3E-12 1E-16 107.6 15.7 134 48-181 45-212 (411)
125 3nf1_A KLC 1, kinesin light ch 99.4 1.7E-12 5.9E-17 104.4 13.6 136 48-183 66-226 (311)
126 3ro3_A PINS homolog, G-protein 99.4 2.3E-12 7.9E-17 93.4 12.7 134 49-182 7-159 (164)
127 3rkv_A Putative peptidylprolyl 99.4 4.9E-12 1.7E-16 93.4 13.8 102 85-186 11-131 (162)
128 3gw4_A Uncharacterized protein 99.4 3.6E-12 1.2E-16 96.6 12.4 134 50-183 25-178 (203)
129 1p5q_A FKBP52, FK506-binding p 99.4 5.5E-12 1.9E-16 104.6 14.5 98 50-147 195-293 (336)
130 3ro2_A PINS homolog, G-protein 99.4 1E-11 3.5E-16 100.3 15.5 132 50-181 4-172 (338)
131 2lni_A Stress-induced-phosphop 99.4 5.9E-12 2E-16 88.7 12.5 104 81-184 12-116 (133)
132 4g1t_A Interferon-induced prot 99.4 5.7E-12 2E-16 107.9 14.7 133 51-183 51-206 (472)
133 3ulq_A Response regulator aspa 99.4 2.6E-12 8.7E-17 107.7 11.8 129 53-181 105-253 (383)
134 2kc7_A BFR218_protein; tetratr 99.4 5.7E-13 2E-17 90.1 6.4 91 54-152 3-94 (99)
135 1a17_A Serine/threonine protei 99.4 9.5E-12 3.3E-16 91.1 13.4 99 50-148 46-146 (166)
136 3sf4_A G-protein-signaling mod 99.4 1E-11 3.5E-16 103.6 14.9 132 50-181 8-176 (406)
137 1ouv_A Conserved hypothetical 99.4 7.3E-11 2.5E-15 94.1 19.0 126 51-181 38-179 (273)
138 2fbn_A 70 kDa peptidylprolyl i 99.4 1.3E-12 4.3E-17 99.8 7.9 128 57-184 10-154 (198)
139 2ifu_A Gamma-SNAP; membrane fu 99.4 3.8E-12 1.3E-16 104.0 11.2 128 51-179 76-222 (307)
140 1dce_A Protein (RAB geranylger 99.4 9.7E-12 3.3E-16 110.2 14.6 138 47-184 59-224 (567)
141 3ma5_A Tetratricopeptide repea 99.4 3E-12 1E-16 87.3 8.6 73 80-152 2-74 (100)
142 3q15_A PSP28, response regulat 99.4 2E-11 6.8E-16 102.3 15.3 132 50-181 140-290 (378)
143 2dba_A Smooth muscle cell asso 99.4 2.5E-11 8.6E-16 87.2 13.6 105 80-184 23-131 (148)
144 3u3w_A Transcriptional activat 99.4 1.4E-11 4.8E-16 99.8 13.6 128 53-180 117-265 (293)
145 3dra_A Protein farnesyltransfe 99.3 2.7E-11 9.1E-16 99.3 15.2 136 49-184 65-218 (306)
146 1na0_A Designed protein CTPR3; 99.3 5.3E-11 1.8E-15 82.5 14.7 105 80-184 3-109 (125)
147 2c2l_A CHIP, carboxy terminus 99.3 2.7E-11 9.1E-16 98.0 14.9 103 82-184 1-104 (281)
148 2qfc_A PLCR protein; TPR, HTH, 99.3 2.4E-10 8.3E-15 92.4 20.5 123 51-173 115-257 (293)
149 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 3.2E-13 1.1E-17 116.7 3.5 119 65-183 248-382 (457)
150 3sf4_A G-protein-signaling mod 99.3 1E-11 3.5E-16 103.5 12.5 135 49-183 185-338 (406)
151 4a1s_A PINS, partner of inscut 99.3 8.7E-12 3E-16 104.8 12.1 136 49-184 221-375 (411)
152 4g1t_A Interferon-induced prot 99.3 2.2E-11 7.6E-16 104.2 14.7 133 51-183 136-278 (472)
153 1elw_A TPR1-domain of HOP; HOP 99.3 4.1E-11 1.4E-15 82.3 13.4 101 84-184 3-104 (118)
154 2vyi_A SGTA protein; chaperone 99.3 1.5E-11 5.2E-16 86.0 11.3 105 80-184 7-112 (131)
155 3dra_A Protein farnesyltransfe 99.3 1.2E-10 4E-15 95.5 18.0 133 51-183 32-177 (306)
156 1na3_A Designed protein CTPR2; 99.3 2.2E-11 7.4E-16 80.5 11.0 83 83-165 7-90 (91)
157 3rjv_A Putative SEL1 repeat pr 99.3 5.2E-11 1.8E-15 92.2 14.2 127 50-181 17-158 (212)
158 2ifu_A Gamma-SNAP; membrane fu 99.3 2.9E-11 1E-15 98.7 13.3 133 50-183 35-186 (307)
159 3ro2_A PINS homolog, G-protein 99.3 1.1E-11 3.8E-16 100.1 10.3 134 49-182 181-333 (338)
160 3k9i_A BH0479 protein; putativ 99.3 3.5E-11 1.2E-15 84.0 11.5 82 47-128 23-104 (117)
161 3q15_A PSP28, response regulat 99.3 1.3E-10 4.4E-15 97.3 16.5 129 49-177 180-328 (378)
162 2xev_A YBGF; tetratricopeptide 99.3 4.2E-11 1.4E-15 84.3 11.4 99 86-184 3-108 (129)
163 3dss_A Geranylgeranyl transfer 99.3 1.8E-10 6.1E-15 95.2 16.0 138 47-184 60-225 (331)
164 3dss_A Geranylgeranyl transfer 99.3 1.6E-10 5.6E-15 95.4 15.5 138 47-184 104-270 (331)
165 3u3w_A Transcriptional activat 99.2 3.4E-10 1.2E-14 91.5 16.5 134 50-183 74-227 (293)
166 2l6j_A TPR repeat-containing p 99.2 1.4E-10 4.8E-15 79.3 12.1 69 84-152 3-71 (111)
167 2ooe_A Cleavage stimulation fa 99.2 1.8E-10 6.1E-15 100.7 15.6 132 50-181 320-454 (530)
168 1elr_A TPR2A-domain of HOP; HO 99.2 9.1E-11 3.1E-15 82.0 11.2 100 84-183 3-110 (131)
169 3rjv_A Putative SEL1 repeat pr 99.2 1.7E-10 5.9E-15 89.2 13.7 129 50-181 49-197 (212)
170 2if4_A ATFKBP42; FKBP-like, al 99.2 1E-11 3.5E-16 103.1 6.9 101 52-152 231-332 (338)
171 1zu2_A Mitochondrial import re 99.2 5.2E-11 1.8E-15 87.8 9.7 106 97-203 14-141 (158)
172 3q7a_A Farnesyltransferase alp 99.2 1.4E-10 4.8E-15 96.4 13.2 122 60-181 63-196 (349)
173 1wao_1 Serine/threonine protei 99.2 1.3E-11 4.5E-16 107.2 7.1 104 49-152 38-154 (477)
174 3q7a_A Farnesyltransferase alp 99.2 1.4E-09 4.6E-14 90.5 18.5 102 49-150 86-198 (349)
175 4f3v_A ESX-1 secretion system 99.2 9.6E-11 3.3E-15 94.5 10.8 133 51-184 102-240 (282)
176 3ma5_A Tetratricopeptide repea 99.2 7.1E-11 2.4E-15 80.4 8.6 81 49-129 5-87 (100)
177 1ihg_A Cyclophilin 40; ppiase 99.2 1.9E-10 6.4E-15 96.8 12.9 94 48-141 270-363 (370)
178 2ooe_A Cleavage stimulation fa 99.2 4.4E-10 1.5E-14 98.3 15.5 136 49-184 270-423 (530)
179 1dce_A Protein (RAB geranylger 99.2 8.3E-10 2.8E-14 97.8 17.1 134 50-183 27-175 (567)
180 2kc7_A BFR218_protein; tetratr 99.2 3.1E-10 1.1E-14 76.4 9.9 86 88-181 3-90 (99)
181 3gw4_A Uncharacterized protein 99.1 8.6E-10 2.9E-14 83.3 12.7 121 61-182 2-137 (203)
182 3ro3_A PINS homolog, G-protein 99.1 6.9E-10 2.4E-14 80.1 11.2 101 50-150 48-160 (164)
183 1hz4_A MALT regulatory protein 99.1 2E-09 6.8E-14 89.5 13.8 132 50-181 52-203 (373)
184 1pc2_A Mitochondria fission pr 99.1 2E-09 7E-14 78.5 11.9 86 67-152 14-104 (152)
185 3bee_A Putative YFRE protein; 99.1 3.2E-09 1.1E-13 71.5 11.9 72 81-152 2-76 (93)
186 1hz4_A MALT regulatory protein 99.1 3.9E-09 1.3E-13 87.7 14.9 134 49-182 12-165 (373)
187 3n71_A Histone lysine methyltr 99.1 3E-09 1E-13 92.5 14.7 130 50-179 308-462 (490)
188 2kat_A Uncharacterized protein 99.1 2.2E-09 7.5E-14 74.3 10.9 83 102-184 2-85 (115)
189 4f3v_A ESX-1 secretion system 99.0 2.5E-09 8.6E-14 86.3 11.6 103 49-152 134-241 (282)
190 2xm6_A Protein corresponding t 99.0 3.6E-08 1.2E-12 85.3 18.6 128 50-182 290-433 (490)
191 2xm6_A Protein corresponding t 99.0 5.8E-08 2E-12 83.9 19.0 125 50-179 38-178 (490)
192 2v5f_A Prolyl 4-hydroxylase su 98.9 1.7E-08 5.7E-13 69.2 11.5 76 51-126 5-87 (104)
193 3e4b_A ALGK; tetratricopeptide 98.9 1.9E-08 6.5E-13 86.5 13.3 123 52-179 177-314 (452)
194 3ly7_A Transcriptional activat 98.9 5.4E-08 1.8E-12 81.0 14.1 136 51-186 196-344 (372)
195 3mv2_B Coatomer subunit epsilo 98.9 1.2E-07 4.1E-12 77.4 15.5 129 52-181 101-240 (310)
196 1klx_A Cysteine rich protein B 98.8 8.6E-08 2.9E-12 69.0 12.9 106 66-178 10-123 (138)
197 1klx_A Cysteine rich protein B 98.8 1E-07 3.5E-12 68.6 12.5 90 57-150 31-128 (138)
198 2v5f_A Prolyl 4-hydroxylase su 98.8 1.2E-07 4.1E-12 64.8 11.7 69 84-152 4-79 (104)
199 3e4b_A ALGK; tetratricopeptide 98.8 7.9E-08 2.7E-12 82.6 12.8 90 52-147 249-350 (452)
200 3bee_A Putative YFRE protein; 98.8 5.4E-08 1.9E-12 65.4 9.3 69 50-118 5-76 (93)
201 3qww_A SET and MYND domain-con 98.7 4.2E-08 1.4E-12 84.1 9.9 96 53-148 300-411 (433)
202 3qwp_A SET and MYND domain-con 98.7 2.9E-07 9.9E-12 78.8 14.0 98 51-148 287-400 (429)
203 4b4t_Q 26S proteasome regulato 98.7 5.4E-07 1.8E-11 75.9 15.2 136 48-183 52-206 (434)
204 3n71_A Histone lysine methyltr 98.7 9.3E-08 3.2E-12 83.2 9.7 106 43-148 343-464 (490)
205 1xi4_A Clathrin heavy chain; a 98.6 8.2E-07 2.8E-11 84.7 16.0 119 49-179 1103-1248(1630)
206 3u64_A Protein TP_0956; tetrat 98.6 1.5E-07 5.1E-12 75.7 9.5 85 67-151 179-272 (301)
207 3mv2_B Coatomer subunit epsilo 98.6 1E-06 3.5E-11 71.9 14.2 132 50-184 135-285 (310)
208 1nzn_A CGI-135 protein, fissio 98.6 7.4E-07 2.5E-11 62.8 11.3 90 65-154 15-109 (126)
209 1pc2_A Mitochondria fission pr 98.6 2.7E-07 9.2E-12 67.3 9.3 79 50-128 31-114 (152)
210 4b4t_Q 26S proteasome regulato 98.6 2E-07 7E-12 78.5 9.4 130 52-181 5-164 (434)
211 3ffl_A Anaphase-promoting comp 98.4 2.5E-06 8.6E-11 62.7 9.7 111 51-161 20-164 (167)
212 1b89_A Protein (clathrin heavy 98.4 1.4E-06 4.6E-11 74.4 9.2 111 52-175 123-266 (449)
213 1xi4_A Clathrin heavy chain; a 98.3 1.1E-05 3.6E-10 77.2 14.6 120 52-179 1196-1343(1630)
214 3ly7_A Transcriptional activat 98.3 6.2E-06 2.1E-10 68.7 11.5 79 79-158 271-349 (372)
215 4e6h_A MRNA 3'-END-processing 98.2 2.4E-05 8.1E-10 70.6 14.2 135 50-184 433-573 (679)
216 1b89_A Protein (clathrin heavy 98.2 3.7E-05 1.3E-09 65.6 13.9 92 50-143 147-267 (449)
217 4e6h_A MRNA 3'-END-processing 98.2 4.9E-05 1.7E-09 68.6 15.4 114 68-181 326-463 (679)
218 3qwp_A SET and MYND domain-con 98.1 6.1E-06 2.1E-10 70.6 7.5 91 40-130 318-424 (429)
219 3qww_A SET and MYND domain-con 98.1 9.5E-06 3.2E-10 69.4 8.3 79 43-121 332-423 (433)
220 3o48_A Mitochondria fission 1 98.1 6.5E-05 2.2E-09 53.1 11.1 71 84-154 39-113 (134)
221 3u64_A Protein TP_0956; tetrat 98.0 0.00013 4.6E-09 58.6 13.6 105 80-184 147-272 (301)
222 1nzn_A CGI-135 protein, fissio 98.0 4.3E-05 1.5E-09 53.7 8.8 79 50-128 34-117 (126)
223 1y8m_A FIS1; mitochondria, unk 98.0 0.0004 1.4E-08 49.7 13.8 72 83-154 37-112 (144)
224 4h7y_A Dual specificity protei 97.9 0.00016 5.5E-09 52.2 11.1 102 50-152 12-127 (161)
225 3o48_A Mitochondria fission 1 97.7 0.00042 1.4E-08 48.9 9.9 79 50-128 39-121 (134)
226 2uy1_A Cleavage stimulation fa 97.7 0.0014 4.6E-08 56.9 15.2 125 51-177 213-379 (493)
227 1y8m_A FIS1; mitochondria, unk 97.7 0.001 3.4E-08 47.6 11.6 79 50-128 38-120 (144)
228 2uy1_A Cleavage stimulation fa 97.6 0.0032 1.1E-07 54.6 16.5 125 51-180 286-412 (493)
229 2ff4_A Probable regulatory pro 97.5 0.008 2.7E-07 50.4 17.2 114 49-162 113-255 (388)
230 3ffl_A Anaphase-promoting comp 97.2 0.0018 6E-08 47.6 8.3 79 50-129 62-165 (167)
231 4g26_A Pentatricopeptide repea 97.1 0.047 1.6E-06 47.4 17.3 95 86-180 106-203 (501)
232 4g26_A Pentatricopeptide repea 97.0 0.033 1.1E-06 48.3 16.1 107 51-158 105-216 (501)
233 4h7y_A Dual specificity protei 97.0 0.0086 2.9E-07 43.2 9.7 103 78-181 6-123 (161)
234 1zbp_A Hypothetical protein VP 96.8 0.023 7.8E-07 45.0 11.9 64 59-122 5-68 (273)
235 3kae_A CDC27, possible protein 96.6 0.11 3.7E-06 38.4 13.3 95 55-154 37-149 (242)
236 4gns_B Protein CSD3, chitin bi 96.4 0.011 3.8E-07 53.7 8.4 81 66-146 300-398 (754)
237 1ya0_A SMG-7 transcript varian 96.3 0.039 1.3E-06 47.8 10.9 81 51-131 152-232 (497)
238 4gns_B Protein CSD3, chitin bi 96.2 0.025 8.5E-07 51.4 9.7 60 52-111 338-397 (754)
239 1ya0_A SMG-7 transcript varian 96.0 0.059 2E-06 46.7 11.0 78 86-163 153-231 (497)
240 1zbp_A Hypothetical protein VP 95.6 0.14 4.7E-06 40.6 10.6 59 94-152 6-64 (273)
241 3txn_A 26S proteasome regulato 95.4 0.29 9.9E-06 41.0 12.4 94 56-149 104-211 (394)
242 2ff4_A Probable regulatory pro 94.7 0.18 6.2E-06 42.1 9.4 63 51-113 171-233 (388)
243 4b4t_R RPN7, 26S proteasome re 94.7 0.11 3.7E-06 44.1 8.1 99 53-151 133-240 (429)
244 3mkq_A Coatomer beta'-subunit; 94.2 0.91 3.1E-05 40.8 13.5 61 83-143 679-747 (814)
245 4b4t_P 26S proteasome regulato 94.1 1.3 4.5E-05 37.6 13.6 99 50-148 136-247 (445)
246 3mkq_B Coatomer subunit alpha; 93.5 1.7 5.7E-05 32.1 12.1 49 59-112 13-61 (177)
247 3kae_A CDC27, possible protein 93.3 1.8 6.1E-05 32.0 15.3 118 58-183 9-145 (242)
248 3spa_A Mtrpol, DNA-directed RN 93.0 2.2 7.6E-05 40.3 13.7 99 50-149 126-231 (1134)
249 4fhn_B Nucleoporin NUP120; pro 92.7 1.2 4.3E-05 42.4 12.2 94 53-146 844-965 (1139)
250 3mkq_A Coatomer beta'-subunit; 91.7 4.8 0.00016 36.0 14.4 82 51-145 681-762 (814)
251 3txn_A 26S proteasome regulato 91.4 5.7 0.00019 33.2 13.7 130 50-179 18-208 (394)
252 3mkq_B Coatomer subunit alpha; 91.1 1.4 4.8E-05 32.5 8.4 82 50-144 33-114 (177)
253 4fhn_B Nucleoporin NUP120; pro 88.3 4.1 0.00014 38.9 11.3 116 57-176 818-962 (1139)
254 2crb_A Nuclear receptor bindin 88.0 1.9 6.6E-05 28.0 6.1 33 46-78 10-42 (97)
255 4b4t_S RPN3, 26S proteasome re 88.0 1.8 6.2E-05 37.5 7.8 66 85-152 231-303 (523)
256 4b4t_R RPN7, 26S proteasome re 87.5 0.84 2.9E-05 38.6 5.6 95 85-179 131-235 (429)
257 2llw_A Heat shock protein STI1 87.5 0.51 1.7E-05 29.3 3.1 32 190-221 10-41 (71)
258 3spa_A Mtrpol, DNA-directed RN 87.0 15 0.00052 34.8 13.7 96 86-181 128-230 (1134)
259 1qsa_A Protein (soluble lytic 86.3 3.8 0.00013 36.4 9.2 86 61-147 262-347 (618)
260 2ijq_A Hypothetical protein; s 86.2 7 0.00024 28.2 9.0 64 50-113 31-103 (161)
261 3ax2_A Mitochondrial import re 85.2 3.4 0.00011 25.7 6.0 29 124-152 22-50 (73)
262 2w2u_A Hypothetical P60 katani 83.1 3.2 0.00011 26.4 5.4 32 48-79 16-47 (83)
263 1qsa_A Protein (soluble lytic 82.2 24 0.00083 31.2 12.6 127 53-180 216-347 (618)
264 4b4t_S RPN3, 26S proteasome re 81.5 2.9 9.9E-05 36.3 6.2 67 50-118 230-303 (523)
265 2lnm_A Protein TIC 40, chlorop 81.5 1.3 4.4E-05 26.5 2.9 23 193-215 5-27 (62)
266 4a5x_A MITD1, MIT domain-conta 79.9 4.3 0.00015 26.0 5.2 31 49-79 14-44 (86)
267 2v6y_A AAA family ATPase, P60 79.0 4.7 0.00016 25.5 5.2 31 49-79 9-39 (83)
268 3ax2_A Mitochondrial import re 78.0 9.8 0.00034 23.5 7.5 36 51-86 17-52 (73)
269 2cfu_A SDSA1; SDS-hydrolase, l 77.7 5.1 0.00017 35.9 6.8 48 86-133 450-497 (658)
270 1om2_A Protein (mitochondrial 77.3 4.9 0.00017 26.3 4.9 29 124-152 25-53 (95)
271 3t5x_A PCI domain-containing p 77.1 9.7 0.00033 28.5 7.3 81 49-137 12-97 (203)
272 3t5v_B Nuclear mRNA export pro 76.6 6.7 0.00023 33.4 6.9 86 66-151 141-253 (455)
273 1wy6_A Hypothetical protein ST 75.2 19 0.00064 25.6 7.6 82 64-150 74-156 (172)
274 1om2_A Protein (mitochondrial 74.5 6.4 0.00022 25.7 4.9 34 50-83 19-52 (95)
275 4gq2_M Nucleoporin NUP120; bet 74.1 24 0.00081 33.0 10.5 89 57-149 816-927 (950)
276 1wy6_A Hypothetical protein ST 73.6 22 0.00074 25.3 7.7 118 56-178 12-151 (172)
277 1wfd_A Hypothetical protein 15 73.4 7.9 0.00027 25.1 5.2 30 50-79 14-43 (93)
278 2v6x_A Vacuolar protein sortin 73.3 8.2 0.00028 24.4 5.2 30 50-79 12-41 (85)
279 2cwy_A Hypothetical protein TT 73.1 16 0.00056 23.6 6.9 57 55-113 5-67 (94)
280 3t5x_A PCI domain-containing p 72.8 10 0.00034 28.4 6.4 51 85-135 14-69 (203)
281 4gq2_M Nucleoporin NUP120; bet 67.7 18 0.0006 33.9 8.1 79 53-131 842-948 (950)
282 2cpt_A SKD1 protein, vacuolar 67.4 11 0.00038 25.6 5.0 31 49-79 16-46 (117)
283 2cfu_A SDSA1; SDS-hydrolase, l 64.4 15 0.0005 32.9 6.6 52 117-168 447-499 (658)
284 2crb_A Nuclear receptor bindin 63.6 14 0.00048 23.9 4.6 28 85-112 15-42 (97)
285 2wpv_A GET4, UPF0363 protein Y 63.4 56 0.0019 26.2 14.3 27 52-78 34-60 (312)
286 3lpz_A GET4 (YOR164C homolog); 61.8 63 0.0022 26.2 15.2 27 117-143 134-160 (336)
287 2w2u_A Hypothetical P60 katani 59.0 20 0.00068 22.6 4.8 15 131-145 31-45 (83)
288 3t5v_B Nuclear mRNA export pro 57.8 52 0.0018 27.9 8.5 68 51-118 176-254 (455)
289 3re2_A Predicted protein; meni 52.3 84 0.0029 26.0 8.4 65 84-148 254-325 (472)
290 2v6y_A AAA family ATPase, P60 50.6 24 0.00082 22.2 4.1 14 131-144 23-36 (83)
291 2rpa_A Katanin P60 ATPase-cont 48.9 24 0.00083 22.0 3.8 28 52-79 13-40 (78)
292 2yhe_A SEC-alkyl sulfatase; hy 54.2 3.7 0.00013 36.8 0.0 53 51-103 461-513 (668)
293 3myv_A SUSD superfamily protei 47.8 57 0.0019 27.4 7.3 47 67-113 164-218 (454)
294 2vkj_A TM1634; membrane protei 47.8 53 0.0018 21.1 7.1 34 49-82 51-84 (106)
295 4gq4_A Menin; tumor suppressor 45.9 1.1E+02 0.0038 25.8 8.3 64 85-148 262-332 (489)
296 2rpa_A Katanin P60 ATPase-cont 45.5 26 0.00089 21.9 3.6 23 90-112 17-39 (78)
297 2cpt_A SKD1 protein, vacuolar 44.6 69 0.0024 21.5 6.8 13 138-150 44-56 (117)
298 3lew_A SUSD-like carbohydrate 44.1 76 0.0026 27.0 7.6 31 85-115 203-233 (495)
299 3kez_A Putative sugar binding 43.1 63 0.0022 27.2 6.9 47 67-113 170-224 (461)
300 2br9_A 14-3-3E, 14-3-3 protein 42.8 96 0.0033 23.7 7.2 21 91-111 178-199 (234)
301 3mcx_A SUSD superfamily protei 41.2 68 0.0023 27.1 6.8 48 67-114 176-231 (477)
302 2npm_A 14-3-3 domain containin 40.9 95 0.0032 24.2 6.9 23 90-112 202-225 (260)
303 2e2a_A Protein (enzyme IIA); h 40.6 52 0.0018 21.8 4.7 30 50-79 19-48 (105)
304 1wcr_A PTS system, N, N'-diace 40.5 53 0.0018 21.6 4.7 29 50-78 17-45 (103)
305 2vkj_A TM1634; membrane protei 40.2 58 0.002 20.9 4.6 45 85-129 53-100 (106)
306 3u84_A Menin; MLL, JUND, ledgf 40.1 1.6E+02 0.0054 25.0 8.3 64 85-148 277-347 (550)
307 3k1s_A PTS system, cellobiose- 37.7 61 0.0021 21.6 4.7 30 49-78 20-49 (109)
308 2dl1_A Spartin; SPG20, MIT, st 37.5 93 0.0032 21.0 6.1 42 101-150 19-60 (116)
309 1o9d_A 14-3-3-like protein C; 37.5 1.3E+02 0.0043 23.5 7.2 44 69-112 153-205 (260)
310 2pmr_A Uncharacterized protein 35.9 68 0.0023 20.4 4.5 27 49-75 37-63 (87)
311 3l8r_A PTCA, putative PTS syst 35.8 66 0.0023 21.8 4.7 29 50-78 36-64 (120)
312 2oo2_A Hypothetical protein AF 35.8 64 0.0022 20.5 4.3 29 48-76 32-60 (86)
313 3uzd_A 14-3-3 protein gamma; s 35.0 1.5E+02 0.0051 22.9 7.2 12 99-110 188-199 (248)
314 4b4t_P 26S proteasome regulato 34.4 2E+02 0.0069 23.9 18.2 96 86-181 138-247 (445)
315 4abx_A DNA repair protein RECN 33.9 90 0.0031 22.4 5.6 50 102-151 73-122 (175)
316 3iqu_A 14-3-3 protein sigma; s 33.7 1.6E+02 0.0054 22.5 7.1 21 91-111 181-202 (236)
317 4b4t_O 26S proteasome regulato 33.5 2E+02 0.0068 23.6 10.6 88 60-147 85-197 (393)
318 2wpv_A GET4, UPF0363 protein Y 33.3 1.8E+02 0.0063 23.1 12.3 94 50-143 52-158 (312)
319 3qnk_A Putative lipoprotein; a 30.7 1.4E+02 0.0047 25.5 7.1 47 67-113 153-210 (517)
320 3bu8_A Telomeric repeat-bindin 30.4 61 0.0021 24.6 4.1 22 61-82 124-145 (235)
321 2xze_A STAM-binding protein; h 29.9 82 0.0028 22.1 4.6 31 49-79 38-68 (146)
322 2yhe_A SEC-alkyl sulfatase; hy 35.8 11 0.00038 33.7 0.0 51 86-136 462-512 (668)
323 3re2_A Predicted protein; meni 29.5 1.1E+02 0.0038 25.3 5.8 43 70-112 276-323 (472)
324 1wfd_A Hypothetical protein 15 29.0 1.1E+02 0.0039 19.4 10.0 16 137-152 40-55 (93)
325 3bqo_A Telomeric repeat-bindin 28.5 44 0.0015 25.0 3.0 38 57-94 123-160 (211)
326 2o8p_A 14-3-3 domain containin 28.3 2E+02 0.0067 21.9 7.0 16 131-146 180-195 (227)
327 3u84_A Menin; MLL, JUND, ledgf 26.9 1.3E+02 0.0044 25.5 5.8 44 69-112 297-345 (550)
328 2a9u_A Ubiquitin carboxyl-term 26.1 1.4E+02 0.0048 20.9 5.2 31 49-79 40-70 (144)
329 3myv_A SUSD superfamily protei 25.9 1.2E+02 0.004 25.4 5.7 46 102-147 165-218 (454)
330 3efz_A 14-3-3 protein; 14-3-3, 25.7 1.2E+02 0.004 23.8 5.1 15 132-146 210-224 (268)
331 3hdx_A SUSD homolog, SUSD supe 25.3 1.6E+02 0.0054 24.8 6.5 30 85-114 197-226 (478)
332 4a5x_A MITD1, MIT domain-conta 25.1 1.3E+02 0.0045 18.8 10.0 11 142-152 46-56 (86)
333 2dl1_A Spartin; SPG20, MIT, st 24.8 1.3E+02 0.0045 20.2 4.6 43 66-116 18-60 (116)
334 2llv_A Heat shock protein STI1 24.4 24 0.00084 21.4 0.9 15 205-219 52-66 (71)
335 3jq1_A SUSD superfamily protei 24.4 1.1E+02 0.0039 25.8 5.4 47 67-113 154-208 (481)
336 2ijq_A Hypothetical protein; s 24.3 2E+02 0.0067 20.5 8.2 59 89-147 36-103 (161)
337 3snx_A SUSD homolog, putative 23.5 2.1E+02 0.0073 23.9 6.9 31 84-114 190-220 (460)
338 3lew_A SUSD-like carbohydrate 23.3 2.4E+02 0.0081 23.9 7.2 46 103-148 176-232 (495)
339 4aez_C MAD3, mitotic spindle c 23.2 2.4E+02 0.0084 21.3 6.6 46 70-115 133-180 (223)
340 2rkl_A Vacuolar protein sortin 22.6 1.2E+02 0.004 17.3 5.3 32 49-80 18-49 (53)
341 3lpz_A GET4 (YOR164C homolog); 22.6 3.1E+02 0.01 22.2 13.1 27 51-77 35-61 (336)
342 3kez_A Putative sugar binding 22.6 1.3E+02 0.0045 25.1 5.4 45 103-147 172-224 (461)
343 4gq4_A Menin; tumor suppressor 22.0 1.8E+02 0.0062 24.5 5.8 44 69-112 282-330 (489)
344 3bu8_A Telomeric repeat-bindin 21.4 81 0.0028 23.9 3.3 38 96-133 125-162 (235)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.90 E-value=4.4e-22 Score=142.96 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
+|..++.++.+|+.+++.|+|++|+..|++++.++|.++.+|+++|.++..+|++++|+.+|+++++++|+++.+|+++|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV 161 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~ 161 (227)
.++..+|++++|+.+|+++++++|++ .+...++.+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999 666666554
No 2
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.84 E-value=1.2e-19 Score=134.30 Aligned_cols=108 Identities=16% Similarity=0.054 Sum_probs=104.3
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..++.+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++...|++++|+..|++++.++|+++.+|+++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDEE 153 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~~ 153 (227)
|.+|..+|++++|+.+|++++.+.|+.+
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999874
No 3
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.83 E-value=3.2e-19 Score=128.00 Aligned_cols=112 Identities=22% Similarity=0.193 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-------H
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-------K 120 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~ 120 (227)
.+.+.++..+|+.+++.|+|++|+.+|+++|.++|+++.+|+++|.+|+.+|++++|+.+|++++.++|.+. .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999999988763 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALK 159 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~ 159 (227)
+|+++|.++..+|+++.|+.+|++++...|+.+....+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 899999999999999999999999999999875554443
No 4
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.8e-19 Score=125.21 Aligned_cols=113 Identities=25% Similarity=0.320 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++..|..++..|+|++|+..|.+++..+|+++.+|+++|.+++..|++++|+.+|++++.++|+++.+|+.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcC------CCh-HHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLD------YDE-EIGMALKKVE 162 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~------p~~-~~~~~l~~~~ 162 (227)
..+|++++|+.+|++++.++ |.+ .++..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999999999 877 5555655554
No 5
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=2.8e-19 Score=131.87 Aligned_cols=120 Identities=11% Similarity=-0.079 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.+..+..++.+|.+++..|+|++|+.+|++++.++|+++.+|+++|.+|...|++++|+..|+++++++|+++.+|+.+|
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 106 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIA 106 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHH-HHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967 127 MARARLGQWEEAAND-LHVASKLDYDE-EIGMALKKVEPNAR 166 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~-~~~a~~~~p~~-~~~~~l~~~~~~~~ 166 (227)
.++...|++++|... ++++++++|++ .++...+.+....|
T Consensus 107 ~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 107 ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 999999999877665 58999999998 55666666665554
No 6
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=5.9e-19 Score=160.30 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
++.++++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..+|+++|.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++..+|++++|+.+|+++++++|++ .++.+++.++...|++++|...|+++.+..+.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998 77889999999999999999999888877654
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=8e-19 Score=136.99 Aligned_cols=133 Identities=18% Similarity=0.147 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++.+|..++..|++++|+..|++++..+|+++.+++++|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHc-----------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 130 ARL-----------GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 130 ~~~-----------g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
... |++++|+..|+++++++|++ .++..++.++...|++.+|...++++.+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 888 88888888888888888877 667777888888888888888777766544
No 8
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.80 E-value=1.2e-18 Score=129.51 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIML------------------NPTSAILYAARAGVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 110 (227)
..+..+...|+.++..|+|++|+..|.+++.+ +|..+.+|+++|.||+.+|++++|+.+|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 46899999999999999999999999999999 777789999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-H-HHHHHHHHHhh
Q 041967 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-I-GMALKKVEPNA 165 (227)
Q Consensus 111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~-~~~l~~~~~~~ 165 (227)
++.++|.++.+|+++|.++..+|++++|+.+|.+++.++|++. . ...+..+....
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999984 3 33555444433
No 9
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=5.5e-18 Score=127.93 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..|+.+|.+++..|+|++|+..|+++++++|+++.+++.+|.++...|++++|+..+.+++..+|.+..++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999998888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
...++++.|...+.+++.++|.+ .++..++.++...|++.+|...+++..+..+.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 88888888888888888888887 66778888888888888888888877776554
No 10
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.79 E-value=7.8e-19 Score=129.98 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHHh-
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-------SAI-----LYAARAGVYVKLNKPNAAIRDAYVALET- 114 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~g~~~~~~~~~~~A~~~~~~al~~- 114 (227)
...+..++..|+.++..|+|++|+..|+++|.++|+ +.. +|.++|.++..+|+|++|+.+|+++|.+
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 347889999999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 041967 115 ------NPDSAKGY----KIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMAL 158 (227)
Q Consensus 115 ------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l 158 (227)
+|++..+| +++|.++..+|++++|+.+|++++.++|++ .+...+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 999999999999999999999999999987 443333
No 11
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.79 E-value=4.7e-18 Score=123.76 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.+.....++..|..++..|+|++|+..|.+++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.++..+|++++|+.+|++++.++|++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999876
No 12
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.79 E-value=4.7e-18 Score=126.52 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+..++.+|..++..|+|++|+.+|.+++.++|.++.+|+++|.+|+..|++++|+.+|++++.++|+++.+|+.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+..+|++++|+.+|++++.++|++
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999998
No 13
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=8.1e-18 Score=131.26 Aligned_cols=135 Identities=22% Similarity=0.195 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHHhCCC
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL-----------NKPNAAIRDAYVALETNPD 117 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~ 117 (227)
..+..++.+|.++...|++++|+..|++++.++|+++.+++++|.++... |++++|+..|++++.++|+
T Consensus 37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 116 (217)
T 2pl2_A 37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116 (217)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence 45789999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++.+++.+|.++..+|++++|+..|++++.++ ++ .++..++.++...|++.+|...+++..+..+.
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999 66 77889999999999999999999999877665
No 14
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.78 E-value=3.1e-17 Score=136.41 Aligned_cols=136 Identities=22% Similarity=0.228 Sum_probs=125.6
Q ss_pred HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967 45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAY 109 (227)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~ 109 (227)
...+..+..++.+|..++..|+|++|+.+|.+++.++|.+ ..+|+++|.|++..|++++|+.+|+
T Consensus 141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455678999999999999999999999999999999998 6999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHH-HHHHHHH
Q 041967 110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRR-KYERLRK 180 (227)
Q Consensus 110 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 180 (227)
+++.++|+++.+|+++|.+|..+|++++|+.+|++++.++|++ .++..++.++...+++.++.. .|.++..
T Consensus 221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 778899999999999998844 4455543
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=1.8e-19 Score=132.91 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=116.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWE 136 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 136 (227)
+|..+..+|++++|+..|++++..+|.++.+++.+|.+|+..|++++|+..|+++++++|+++.+|+.+|.++..+|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 57778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHh
Q 041967 137 EAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY-ERLRKEREL 184 (227)
Q Consensus 137 ~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~ 184 (227)
+|+.+|+++++++|++ .++..++.++...|++.++...+ +++.+..+.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 9999999999999998 88889999999999988776664 777776665
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.78 E-value=4.8e-18 Score=125.04 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.+.....++..|..++..|+|++|+..|.+++..+|.++.+|+++|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.++..+|++++|+.+|++++.++|++
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999886
No 17
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.78 E-value=1.1e-16 Score=117.92 Aligned_cols=134 Identities=25% Similarity=0.315 Sum_probs=119.5
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
.....+..++..|..++..|+|++|+..|.+++..+|.++.+++++|.++...|++++|+..+++++.++|.++.+++.+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 87 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 33457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH--HHhhhhHHHHHHHHHHHH
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV--EPNARRIQEHRRKYERLR 179 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 179 (227)
|.++..+|++++|+.+|.+++.++|.+ ..+..++.. ....|++.+|...+....
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999999998 555444333 566777777777765543
No 18
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=5.4e-18 Score=143.51 Aligned_cols=138 Identities=14% Similarity=0.060 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK-PNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
.+..+.++..+|.++...|++++|+..|.++|.++|++..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 445788999999999999999999999999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|.++..+|++++|+.+|++++.++|++ .+|..++.++...|++.+|...++++.+..+.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998 88889999999999999999999888876653
No 19
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=1.7e-17 Score=128.52 Aligned_cols=118 Identities=17% Similarity=0.095 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCcHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAA----------------RAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
.++.++..|..++..|+|++|+.+|.+++..+|+++.+++. +|.++...|++++|+..|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh
Q 041967 114 TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR 167 (227)
Q Consensus 114 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~ 167 (227)
++|+++.+++.+|.++...|++++|+.+|++++.++|++ .++..++.++...++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999998 778888888765543
No 20
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=1.3e-17 Score=151.50 Aligned_cols=136 Identities=21% Similarity=0.149 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
+.+.+++++|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus 41 ~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~ 120 (723)
T 4gyw_A 41 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|..+|++++|+.+|+++++++|++ .++..++.++...|++.+|...++++....+.
T Consensus 121 ~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 121 HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999 78889999999999999999999888766543
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.77 E-value=3.8e-17 Score=123.27 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
++.+.+++.+|.+++..|++++|+..+.+++...|+++.++..+|.++...++++.|+..+.+++.++|.+..+++.+|.
T Consensus 36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~ 115 (184)
T 3vtx_A 36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL 115 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++..+|++++|+..|+++++++|.+ .++..++.++...|++.+|...|+++.+..+.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999 78889999999999999999999998876654
No 22
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.76 E-value=4.3e-17 Score=127.22 Aligned_cols=134 Identities=15% Similarity=0.076 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP-TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
+..++..|..++..|+|++|+..|.+++..+| .+..+++++|.++...|++++|+..|++++..+|.+..+++.+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 48899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChH-H-------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDEE-I-------GMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~~-~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
..+|++++|+..|++++.++|++. . +..++.+....|++.+|...++++.+..+.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999974 2 568888999999999999999888765443
No 23
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.76 E-value=7.8e-17 Score=125.75 Aligned_cols=119 Identities=17% Similarity=0.102 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-------HHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-------KGY 122 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~ 122 (227)
....++.+|.+++..|+|++|+..|.+++..+|+++.+++.+|.++...|++++|+..|++++.++|+++ .+|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 120 (228)
T 4i17_A 41 DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY 120 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999999999999 679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h-HHHHHHHHHHHhhhhH
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKLDYD--E-EIGMALKKVEPNARRI 168 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-~~~~~l~~~~~~~~~~ 168 (227)
+.+|.++..+|++++|+..|++++.++|+ + .++..++.++...|..
T Consensus 121 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 121 LKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 7 7788889888877776
No 24
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.76 E-value=5.4e-17 Score=116.40 Aligned_cols=114 Identities=28% Similarity=0.351 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++..|..++..|+|++|+.+|.+++..+|.++.+++++|.+++..|++++|+..|++++.++|.++.+++.+|.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC-----h-HHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYD-----E-EIGMALKKVEP 163 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~-----~-~~~~~l~~~~~ 163 (227)
..+|++++|+..|.+++.++|+ + .+...+..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 4 44445544443
No 25
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.75 E-value=9.3e-17 Score=123.05 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=117.1
Q ss_pred HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCcHHHHHHH
Q 041967 45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----------------ILYAARAGVYVKLNKPNAAIRDA 108 (227)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~g~~~~~~~~~~~A~~~~ 108 (227)
......+..++..|..++..|+|++|+..|.+++.+.|.++ .+++++|.+++..|++++|+.+|
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34456788999999999999999999999999999999887 89999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH
Q 041967 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR 172 (227)
Q Consensus 109 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 172 (227)
++++.++|.++.+++.+|.++..+|++++|+.+|++++.++|++ .++..++.+....++..++.
T Consensus 112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 77778888888777766655
No 26
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.75 E-value=7e-17 Score=139.70 Aligned_cols=131 Identities=20% Similarity=0.239 Sum_probs=119.9
Q ss_pred HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967 45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAY 109 (227)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~ 109 (227)
...+..+..++.+|+.++..|+|++|+..|.+++.++|.+ ..+|+++|.||+++|++++|+.+|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455778999999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967 110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY 175 (227)
Q Consensus 110 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 175 (227)
+++.++|++..+|+++|.+|..+|++++|+.+|+++++++|++ .++..++.++...+++.++....
T Consensus 342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 77889999999999888776654
No 27
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.75 E-value=2.7e-16 Score=110.80 Aligned_cols=122 Identities=29% Similarity=0.336 Sum_probs=114.0
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..+..+..++..|..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR 167 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~ 167 (227)
|.++...|++++|+..|++++.++|.+ ..+..++.++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988 667788877776665
No 28
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.74 E-value=4e-17 Score=116.00 Aligned_cols=101 Identities=10% Similarity=-0.018 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
..++..|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCh
Q 041967 132 LGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.|++++|+..|++++.++|.+
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999975
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-16 Score=113.16 Aligned_cols=117 Identities=27% Similarity=0.334 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
...+++.+|..++..|+|++|+.+|.+++..+|.++.+++++|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR 166 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~ 166 (227)
...|++++|+.+|++++.++|.+ .++..++.++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999998 77777777766544
No 30
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.73 E-value=4.4e-16 Score=107.81 Aligned_cols=112 Identities=28% Similarity=0.423 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++..|..++..|+|++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKV 161 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~ 161 (227)
...|++++|...|++++.++|++ ..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999999998 555555554
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=3e-17 Score=138.95 Aligned_cols=136 Identities=14% Similarity=0.083 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGK-LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
....+|+.+|.++...|+ +++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++|.++|++..+|+++|.
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~ 208 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence 457889999999999996 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh-hhhHHHH-----HHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN-ARRIQEH-----RRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~ 184 (227)
++..+|++++|+.+|.+++.++|++ .+|..++.++.. .|...+| ...+.++....+.
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~ 272 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999 889999999988 4543666 3666676665553
No 32
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=1.1e-17 Score=123.84 Aligned_cols=113 Identities=9% Similarity=-0.100 Sum_probs=108.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 72 GQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 72 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
..|.+++.++|+++.+++++|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|++++.++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 55788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 152 E-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 152 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+ .++..++.++...|++.+|...|+++.+..+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9 88999999999999999999999999887665
No 33
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=1.2e-16 Score=114.37 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=102.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HH
Q 041967 76 EAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EI 154 (227)
Q Consensus 76 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~ 154 (227)
++..++|..+..+.++|.++++.|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+..|.++++++|++ .+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 155 GMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+..++.++...|++.+|...|+++.+..+.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 889999999999999999999999887775
No 34
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.71 E-value=8.1e-16 Score=108.54 Aligned_cols=130 Identities=23% Similarity=0.212 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
..++.+|..++..|++++|+..|.+++..+|.+..+++.+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
.|++++|+..|.+++...|.+ ..+..++.++...|++.+|...+.+....
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999999988 77889999999999999999998877654
No 35
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.71 E-value=2.7e-15 Score=111.79 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...++..|..++..|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence 45566666667777777777777777777666666667777777777777777777777777777777667777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..|++++|+..|.+++...|.+ .++..++.++...|++.+|...+++.....+
T Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7777777777777777776666 5556666666666666666666666554443
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=2.3e-15 Score=119.65 Aligned_cols=134 Identities=15% Similarity=0.068 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
+..+..++.+|..++..|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++.++|.++.+++.+|.
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 119 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
++...|++++|+..|++++.++|++........+....|++.++...+.+....
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999855444444556779999999988666544
No 37
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.70 E-value=4.4e-16 Score=131.26 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIM----------------LNPTSAILYAARAGVYVKLNKPNAAIRDAYV 110 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 110 (227)
....+..++.+|..++..|+|++|+..|++++. .+|.++.+|+++|.+++.+|++++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345678899999999999999999999999998 7788889999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHH
Q 041967 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRK 174 (227)
Q Consensus 111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~ 174 (227)
++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|++ .++..++.+....++..++...
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 6777888888777776665543
No 38
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.70 E-value=5.5e-16 Score=123.56 Aligned_cols=134 Identities=11% Similarity=0.036 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYK 123 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 123 (227)
.+..++..|..++..|+|++|+..|++++..+|.+ +.+++.+|.+++..|++++|+..|++++..+|++ +.+++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 47899999999999999999999999999999998 8999999999999999999999999999998865 67899
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHhcCCCh-HHH-----------------HHHHHHHHhhhhHHHHHHHHHH
Q 041967 124 IRGMARAR--------LGQWEEAANDLHVASKLDYDE-EIG-----------------MALKKVEPNARRIQEHRRKYER 177 (227)
Q Consensus 124 ~la~~~~~--------~g~~~~A~~~~~~a~~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~~~ 177 (227)
.+|.++.. .|++++|+..|++++..+|++ ... ..++.++...|++.+|...+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999 999999999999999999987 444 5779999999999999999999
Q ss_pred HHHHHH
Q 041967 178 LRKERE 183 (227)
Q Consensus 178 ~~~~~~ 183 (227)
+.+..+
T Consensus 174 ~l~~~p 179 (261)
T 3qky_A 174 VFDAYP 179 (261)
T ss_dssp HHHHCT
T ss_pred HHHHCC
Confidence 887654
No 39
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.70 E-value=1.2e-15 Score=118.19 Aligned_cols=128 Identities=13% Similarity=-0.010 Sum_probs=111.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ-- 134 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 134 (227)
+|.+++..|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++.++|+++.+|+.+|.+|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 135 WEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 135 ~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
...+...|.+++...|....+..++......|++.+|...++++.+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 45567788887655444445667788888899999999999999877665
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.5e-15 Score=117.98 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCcHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM--------------------------LNPTSAILYAARAGVYVKLNKPNAA 104 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~g~~~~~~~~~~~A 104 (227)
+..++.+|..+...|++++|+.+|.+++. .+|.++.++..+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 68999999999999999999999999999 6667788999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 105 IRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 105 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+..|++++..+|.++.+++.+|.++...|++++|+..|.+++..+|++ ..+..++.++...|++.+|...+++..+..+
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999998 7788999999999999999999998887663
No 41
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.69 E-value=1e-15 Score=108.55 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIR 125 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 125 (227)
..++..|..++..|+|++|+..|.+++..+|+++ .+++.+|.+++..|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999987 799999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDEE 153 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~~ 153 (227)
|.++..+|++++|+..|++++...|++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 9999999999999999999999999873
No 42
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-16 Score=110.95 Aligned_cols=113 Identities=25% Similarity=0.318 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.+..++..|..++..|+|++|+.+|++++..+|++ ..+++++|.++...|++++|+..|++++.++|.++.+++.+|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 57889999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE 162 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~ 162 (227)
.++..+|++++|+.+|++++.++|++ .++..+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999998 5566665554
No 43
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.69 E-value=1.1e-15 Score=107.67 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-------HHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-------AKGY 122 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~ 122 (227)
.+..++.+|..++..|+|++|+.+|.+++..+|.++.+++++|.++...|++++|+..|++++...|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999887 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 041967 123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNAR 166 (227)
Q Consensus 123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~ 166 (227)
+.+|.++...|++++|+.+|++++.+.|+......+..+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996566666665554443
No 44
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.69 E-value=4.3e-15 Score=103.62 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++..|..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN 164 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~ 164 (227)
...|++++|+..|.+++.++|.+ .....++.+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999998 556666666543
No 45
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=2.5e-16 Score=115.73 Aligned_cols=115 Identities=10% Similarity=-0.026 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 70 AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 70 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
+-..|.+++.++|.+..+++++|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|.+++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 150 YDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 150 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|++ ..+..++.++...|++.+|...+++..+..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 998 88889999999999999999999998877654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=5e-15 Score=113.92 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++.+|..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHc-CCHHHHHHHHHHHHh--cCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 130 ARL-GQWEEAANDLHVASK--LDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 130 ~~~-g~~~~A~~~~~~a~~--~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
... |++++|+..|++++. ..|.+ ..+..++.++...|++.+|...+.+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555 555555555555555 33443 34445555555555555555555554443
No 47
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.68 E-value=1.5e-16 Score=132.35 Aligned_cols=139 Identities=27% Similarity=0.332 Sum_probs=98.1
Q ss_pred HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCcHHHHHH
Q 041967 45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-----------------ILYAARAGVYVKLNKPNAAIRD 107 (227)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~g~~~~~~~~~~~A~~~ 107 (227)
......+..++..|+.++..|+|++|+.+|.+++...|.+. .+|+++|.||+.+|++++|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556789999999999999999999999999999999876 4899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHH
Q 041967 108 AYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP-NARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 108 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~ 183 (227)
|++++.++|++..+|+++|.+|..+|++++|+.+|++++.++|++ .++..+..+.. ..+....++..|.++....+
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999998 66667777643 34445556666666655444
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=3.3e-15 Score=116.58 Aligned_cols=135 Identities=20% Similarity=0.152 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.....++.+|..++..|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.+
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
+...|++++|+..|.+++...|.+ ..+..++.++...|++.+|...+++..+..+
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999988 7788999999999999999999988876644
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=4.6e-15 Score=110.50 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++..|..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
...|++++|...|.+++...|.+ ..+..++.++...|++.+|...+++..+..+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999998 77889999999999999999999888766543
No 50
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.66 E-value=5.8e-15 Score=121.09 Aligned_cols=134 Identities=21% Similarity=0.233 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.++.++..|..++..|+|++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC---Ch-HHHHHH------------HHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDY---DE-EIGMAL------------KKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p---~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
...|++++|+..|++++.++| .+ ..+..+ +.++...|++.+|...++++.+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999 76 555555 5788899999999999988876654
No 51
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=2.5e-15 Score=132.85 Aligned_cols=137 Identities=16% Similarity=0.008 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
+..+..++.+|..++..|+|++|+..|++++..+|+++.+++++|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 99 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA---RRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~ 184 (227)
++..+|++++|+..|+++++++|++ ..+..++.++... |++.+|...+++..+..+.
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999998 7788999999999 9999999999888776553
No 52
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=6.7e-15 Score=113.17 Aligned_cols=131 Identities=13% Similarity=0.092 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++..|..++..|+|++|+..|.+++ +| ++.+++++|.++...|++++|+..|++++.++|.++.+++.+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 45678999999999999999999999996 44 7899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-----------------EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..+|++++|+..|++++.+.|.+ .++..++.++...|++.+|...++++.+..+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999999988763 4677999999999999999999998887655
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=6.5e-15 Score=114.88 Aligned_cols=135 Identities=16% Similarity=0.087 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
...|++++|+..|.+++...|.+ .++..++.++...|++.+|...++++.+..+.
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 99999999999999999999998 77889999999999999999999888776554
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=1.5e-15 Score=131.79 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKL-EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.+..++.+|..++..|+| ++|+.+|++++.++|+++.+|+++|.+|...|++++|+..|++++.++|+ ..+++.+|.+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence 467899999999999999 99999999999999999999999999999999999999999999999999 7999999999
Q ss_pred HHHc---------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHH
Q 041967 129 RARL---------GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA--------RRIQEHRRKYERLRKERE 183 (227)
Q Consensus 129 ~~~~---------g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~ 183 (227)
+..+ |++++|+..|++++.++|++ ..+..++.++... |++.+|...|+++.+..+
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 9999 99999999999999999998 8888999999999 999999999999988765
No 55
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.66 E-value=4.6e-15 Score=118.18 Aligned_cols=134 Identities=16% Similarity=0.027 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHhCCCCH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVK--------LNKPNAAIRDAYVALETNPDSA 119 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~ 119 (227)
..+++.+|.+++..|+|++|+..|++++..+|++ +.+++.+|.+++. .|++++|+..|++++..+|+++
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 7899999999999999999999999999998854 6789999999999 9999999999999999999987
Q ss_pred HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhh----------hhH
Q 041967 120 KGY-----------------KIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKKVEPNA----------RRI 168 (227)
Q Consensus 120 ~~~-----------------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~~~~~~----------~~~ 168 (227)
.++ +.+|.+|...|++++|+..|++++...|++ .++..++.++... |++
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~ 211 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY 211 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence 655 889999999999999999999999999983 4567888888766 889
Q ss_pred HHHHHHHHHHHHHHHh
Q 041967 169 QEHRRKYERLRKEREL 184 (227)
Q Consensus 169 ~~a~~~~~~~~~~~~~ 184 (227)
.+|...++++.+..+.
T Consensus 212 ~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 212 RRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999998877664
No 56
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=3.7e-15 Score=116.54 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---HHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK---GYKI 124 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 124 (227)
+..++.+|..++..|+|++|+..|++++..+|.+ ..+++.+|.+++..|++++|+..|++++..+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 5789999999999999999999999999999986 468999999999999999999999999999999864 8999
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHhcCCCh-HHH-----------------HHHHHHHHhhhhH
Q 041967 125 RGMARAR------------------LGQWEEAANDLHVASKLDYDE-EIG-----------------MALKKVEPNARRI 168 (227)
Q Consensus 125 la~~~~~------------------~g~~~~A~~~~~~a~~~~p~~-~~~-----------------~~l~~~~~~~~~~ 168 (227)
+|.++.. .|++++|+..|++++..+|++ .++ ..++.++...|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 9999987 578999999999999999997 332 3566777888999
Q ss_pred HHHHHHHHHHHHHHHh
Q 041967 169 QEHRRKYERLRKEREL 184 (227)
Q Consensus 169 ~~a~~~~~~~~~~~~~ 184 (227)
.+|...++++.+..+.
T Consensus 164 ~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCcC
Confidence 9999999888877554
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.65 E-value=4.2e-15 Score=129.05 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHhCCCCH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL---------NKPNAAIRDAYVALETNPDSA 119 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~ 119 (227)
..+.+++.+|.+++..|++++|+.+|++++.++|+ +.++.++|.++... |++++|+..|++++.++|++.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 213 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence 45789999999999999999999999999999999 79999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 120 KGYKIRGMARARL--------GQWEEAANDLHVASKLDY---DE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 120 ~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.+|+.+|.+|..+ |++++|+.+|++++.++| .+ ..+..++.++...|++.+|...++++.+..+.
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999 999999999999999999 77 77889999999999999999999998877664
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.3e-14 Score=114.09 Aligned_cols=134 Identities=22% Similarity=0.179 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++.+|..++..|++++|+.+|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 47888999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHh--cCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASK--LDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~--~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
...|++++|+..|.+++. ..|.+ .++..++.++...|++.+|...+++..+..+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988 77777 6677888888888999999888887776544
No 59
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.65 E-value=4.6e-15 Score=124.32 Aligned_cols=134 Identities=21% Similarity=0.083 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++.+|..++..|++++|+..|++++..+|++..++.++|.++...|++++|+..|++++..+|++..++..+|.++
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..+|++++|+..|.+++..+|++ ..+..++.++...|++.+|...++++.+..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 200 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88888888888888888888877 6677778888888888888888777765544
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=1.7e-14 Score=110.90 Aligned_cols=134 Identities=16% Similarity=0.091 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHH--hCCCCHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL-NKPNAAIRDAYVALE--TNPDSAKGYKIRG 126 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la 126 (227)
....+..+|..++..|++++|+.+|.+++..+|.++.++..+|.++... |++++|+..+++++. .+|.+..+++.+|
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 120 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999 999999999999999 6677789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.++...|++++|+..|.+++...|.+ ..+..++.++...|++.+|...+++..+..+
T Consensus 121 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998 7788999999999999999999988887765
No 61
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.7e-15 Score=115.94 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----------
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-------AILYAARAGVYVKLNKPNAAIRDAYVALE----------- 113 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------- 113 (227)
..++.+|..++..|++++|+.+|.+++..+|.+ +.+++.+|.++...|++++|+..|++++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 118 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL 118 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHH
Confidence 445555555555555555555555555554443 44555555555555555555555555555
Q ss_pred ---------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHH
Q 041967 114 ---------------TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYER 177 (227)
Q Consensus 114 ---------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (227)
.+|.++.+++.+|.++...|++++|+..|++++..+|.+ .++..++.++...|++.+|...+++
T Consensus 119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 333444455555555555555555555555555555554 4444555555555555555555555
Q ss_pred HHHH
Q 041967 178 LRKE 181 (227)
Q Consensus 178 ~~~~ 181 (227)
..+.
T Consensus 199 al~~ 202 (258)
T 3uq3_A 199 AIEK 202 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
No 62
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=1.3e-14 Score=121.64 Aligned_cols=134 Identities=16% Similarity=0.055 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..+..+|..+...|++++|+..|++++..+|+++.++.++|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
...|++++|+..|++++.++|.+ .++..++.++...|++.+|...++++.+..+
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 88888888888888888888887 6677888888888888888888877766544
No 63
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=3.8e-15 Score=123.74 Aligned_cols=130 Identities=16% Similarity=0.038 Sum_probs=117.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 132 (227)
...|..+...|++++|+.+|.+++..+|. ++.+++++|.++...|++++|+..|++++.++|.++.+|+.+|.++...
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG 260 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34588999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 133 GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|++++|+..|++++.++|++ .++..++.++...|++.+|...++++.+..+.
T Consensus 261 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999998 77889999999999999999999999877764
No 64
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.64 E-value=1.9e-15 Score=109.82 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=104.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 72 GQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 72 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
..|.+++..+|.+...++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++..+|++++|+.+|.+++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 152 E-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 152 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+ ..+..++.++...|++.+|...+++.....+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9 78889999999999999999999998877663
No 65
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=1.2e-15 Score=114.52 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCc--HHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV-YVKLNKP--NAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..+..++.+|..++..|++++|+.+|.+++..+|.++.+++.+|.+ ++..|++ ++|+..|++++..+|.++.+++.+
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 121 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3567899999999999999999999999999999999999999999 7889998 999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 126 GMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 126 a~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
|.++...|++++|+..|.+++.++|.+
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999987
No 66
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2.9e-15 Score=119.15 Aligned_cols=133 Identities=10% Similarity=0.058 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
...++.+|..++..|+|++|+..|.+++. .|.+ +.++..+|.++...|++++|+..|++++..+|.++.++..+|
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 115 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG 115 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 44677788888888888888888888887 3332 445778888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.++...|++++|+.+|++++.++|.+ .++..++......+++.+|...++++.+..+.
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 88888888888888888888888877 66667773444455788888888777766554
No 67
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=3.7e-14 Score=111.53 Aligned_cols=135 Identities=13% Similarity=0.166 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--hCCCCHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE--TNPDSAKGYKIRG 126 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la 126 (227)
.....++.+|..++..|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++. ..|.+..+++.+|
T Consensus 69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.++...|++++|+..|.+++...|.+ ..+..++.++...|++.+|...+++..+..+
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999998 7788999999999999999999988775443
No 68
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=1.6e-14 Score=119.91 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-------------
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD------------- 117 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------- 117 (227)
+..++.+|..++..|++++|+..|.+++..+|+++.++.++|.++...|++++|+..|++++.++|.
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 178 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence 3445555555555555555555555555555555555555555555555555555544444443322
Q ss_pred ---------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967 118 ---------------------------------SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP 163 (227)
Q Consensus 118 ---------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~ 163 (227)
++.+++.+|.++...|++++|+..|++++.+.|.+ .++..++.++.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44455555555555555555555555555555554 44445555555
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 041967 164 NARRIQEHRRKYERLRKE 181 (227)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~ 181 (227)
..|++.+|...++++.+.
T Consensus 259 ~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 555555555555554443
No 69
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=1.7e-15 Score=137.11 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++.+|..++..|+|++|+..|+++++.+|+++.+|+++|.+++..|++++|+..|+++++++|++..+|+++|.++
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATA 511 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..+|++++ +.+|+++++++|++ .++..++.++...|++++|...|+++.+..+
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred HHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence 99999999 99999999999999 7788999999999999999999988765544
No 70
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.62 E-value=3.2e-15 Score=102.54 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SAKGYKIRGMA 128 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 128 (227)
+..++.+|..++..|++++|+.+|.+++..+|.+..+++++|.++...|++++|+..|++++..+|. +..+++.+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHc-CCHHHHHHHHHHHHhcCCCh
Q 041967 129 RARL-GQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 129 ~~~~-g~~~~A~~~~~~a~~~~p~~ 152 (227)
+..+ |++++|+.++.+++...|.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999999999875
No 71
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.5e-14 Score=116.22 Aligned_cols=133 Identities=11% Similarity=-0.004 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEG-KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.+..++.+|..++..| ++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++...|.+..+++.+|.+
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4567888888888888 888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
+...|++++|+..|++++..+|.+ .++..++.++...|++.+|...++++.+..
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 888888888888888888888888 667788888888888888888887777654
No 72
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.62 E-value=1.9e-15 Score=111.62 Aligned_cols=92 Identities=18% Similarity=0.114 Sum_probs=85.8
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967 63 SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKP----------NAAIRDAYVALETNPDSAKGYKIRGMARARL 132 (227)
Q Consensus 63 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 132 (227)
+.+.|++|+..|.+++.++|+++.+|+++|.++...+++ ++|+..|+++|+++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 346799999999999999999999999999999999876 4999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHhcCCChHH
Q 041967 133 G-----------QWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 133 g-----------~~~~A~~~~~~a~~~~p~~~~ 154 (227)
| ++++|+.+|++|+.++|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 5 899999999999999999843
No 73
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.62 E-value=6.9e-16 Score=134.19 Aligned_cols=128 Identities=26% Similarity=0.331 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+..++.+|..++..|+|++|+.+|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH--HHhhhhHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKV--EPNARRIQEHRRKYE 176 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~--~~~~~~~~~a~~~~~ 176 (227)
|..+|++++|+..|+++++++|++ ..+..++.+ ....|++++|...++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999998 677777777 667788888888776
No 74
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=3.4e-14 Score=106.48 Aligned_cols=124 Identities=16% Similarity=0.120 Sum_probs=112.8
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 041967 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA-RARLGQW--EE 137 (227)
Q Consensus 61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 137 (227)
++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++.++|.++.+++.+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 138 AANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 138 A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|+..|.+++.++|.+ .++..++.++...|++.+|...++++.+..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999999999998 77889999999999999999999998876554
No 75
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.62 E-value=4.4e-14 Score=120.15 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.+..+..++.+|..++..|+|++|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|++..+++.+|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChH----HHHHH------------HHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDEE----IGMAL------------KKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.++..+|++++|+..|++++.++|.+. .+..+ +.++...|++.+|...++++.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999874 23333 5557889999999999988776544
No 76
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=1.4e-14 Score=119.82 Aligned_cols=128 Identities=16% Similarity=0.067 Sum_probs=99.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 133 (227)
..|..+ ..|++++|+..|.+++..+|. ++.++.++|.++...|++++|+..|++++.++|.++.+++.+|.++...|
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 444444 677788888888888888887 67778888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 134 QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 134 ~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++++|+..|++++.++|.+ .++..++.++...|++.+|...+++.....+.
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888877 66677788888888888888888777766554
No 77
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.61 E-value=5.9e-15 Score=119.58 Aligned_cols=103 Identities=28% Similarity=0.360 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++.+|..++..|+|++|+..|.+++..+|+++.+++++|.++...|++++|+.+|++++.++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
..+|++++|+..|.+++.++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999864
No 78
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=2.7e-14 Score=115.85 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...+..+|..+...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++..+|.+..+++.+|.++.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCC------------h-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVASKLDYD------------E-EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~------------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
..|++++|+..|++++.+.|. + .++..++.++...|++.+|...+++..
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888888888888888888877 5 556677777777787777777765443
No 79
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.61 E-value=1.1e-15 Score=107.46 Aligned_cols=91 Identities=18% Similarity=0.104 Sum_probs=83.6
Q ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967 63 SEGKLEDAIGQLTEAIML---NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA 139 (227)
Q Consensus 63 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 139 (227)
..|++++|+..|++++.. +|+++.+++++|.+++..|++++|+..|++++.++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChH
Q 041967 140 NDLHVASKLDYDEE 153 (227)
Q Consensus 140 ~~~~~a~~~~p~~~ 153 (227)
..|++++...|++.
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 99999999999983
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.60 E-value=3.3e-14 Score=111.15 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCcHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI---LYAARAGVYVK------------------LNKPNAAIRDAY 109 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~------------------~~~~~~A~~~~~ 109 (227)
..+++.+|.+++..|+|++|+..|++++..+|+++. +++.+|.++.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 578999999999999999999999999999999864 89999999986 578999999999
Q ss_pred HHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhhhhH
Q 041967 110 VALETNPDSAKGY-----------------KIRGMARARLGQWEEAANDLHVASKLDYDEE----IGMALKKVEPNARRI 168 (227)
Q Consensus 110 ~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~l~~~~~~~~~~ 168 (227)
+++..+|+++.++ +.+|.+|...|++.+|+..|++++...|++. ++..++.++...|++
T Consensus 121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 9999999987554 6789999999999999999999999999863 466899999999999
Q ss_pred HHHHHHHHHHHHH
Q 041967 169 QEHRRKYERLRKE 181 (227)
Q Consensus 169 ~~a~~~~~~~~~~ 181 (227)
.+|...++.+...
T Consensus 201 ~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 201 AQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999988776543
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.59 E-value=2.1e-14 Score=107.93 Aligned_cols=131 Identities=16% Similarity=0.099 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYV-KLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
++.+..++.+|.+++..|++++|+..|++++..+| ++.++..++.+.+ ..+....|+..+++++..+|+++.+++.+|
T Consensus 37 P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la 115 (176)
T 2r5s_A 37 QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA 115 (176)
T ss_dssp HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34456666666666666666666666666666666 5555444443322 222333456666666677777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 127 MARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
.++...|++++|+..|+++++.+|+. .++..++.++...|+..++...|++..
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777777777777777777776653 355666666666676666666665443
No 82
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.59 E-value=1.9e-13 Score=113.10 Aligned_cols=134 Identities=14% Similarity=0.077 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHH--------------------
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-SAILYAARAGVYVKLNKPNAAIRDA-------------------- 108 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~-------------------- 108 (227)
.+..++.+|.+++..|++++|+..|.+++..+|. . .++..+|.++...|++++|+..+
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ-TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 4566677777777777777777777777766653 3 23455556665555555555555
Q ss_pred -----------------------------HHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 041967 109 -----------------------------YVALETNPD--SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGM 156 (227)
Q Consensus 109 -----------------------------~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~ 156 (227)
++++..+|. .+.+++.+|.++...|++++|+..|++++.++|.+ .++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 255 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence 455555666 78899999999999999999999999999999998 7788
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 157 ALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.++.++...|++.+|...++++.+..+.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999988776553
No 83
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=2.6e-14 Score=113.57 Aligned_cols=132 Identities=14% Similarity=0.036 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
+..+..+|..+...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++.++|.++.+++.+|....
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999995555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR---IQEHRRKYERLRKER 182 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~ 182 (227)
..+++++|+..|++++.++|++ ..+..++.+....++ +.+|...+++..+..
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 6679999999999999999998 777788888888887 777888887776654
No 84
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=5.1e-14 Score=108.20 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-----------
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----------- 119 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------- 119 (227)
+..++.+|.+++..|+|++|+..|.+++..+|.++.+++++|.++...|++++|+..|++++.+.|.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 116 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence 578999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 120 -----KGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 120 -----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999999999999999999986
No 85
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.58 E-value=7.2e-14 Score=113.51 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
.+...+..++..|++++|+..+.+++..+|.++.+++.+|.++...| ++++|+..|++++..+|.++.+|+.+|.++..
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666666666666666666 56666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.|++++|+..|.+++.+.|.+ ..+..++.++...|++.+|...++++.+..+
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 190 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 666666666666666666655 5555566666666666666666655554433
No 86
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.3e-14 Score=98.88 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHH
Q 041967 82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKK 160 (227)
Q Consensus 82 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~ 160 (227)
|..+..++.+|.+++..|++++|+..|++++.++|.++.+|+++|.++..+|++++|+.+|.+++.++|++ ..+..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH
Q 041967 161 VEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
++...|++.+|...+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999988777
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.58 E-value=2.4e-14 Score=116.28 Aligned_cols=136 Identities=13% Similarity=0.036 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.....++..|..++..|++++|+..|++++..+|+++.+++++|.++...|++++|+..+++++..+|+....+...+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+...+....|+..|++++..+|++ ..+..++.++...|++.+|...+.++.+..+.
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 888888888899999999999988 77778888888999999999999888877654
No 88
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.57 E-value=8.7e-14 Score=120.75 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
+..+..+|..++..|++++|+..|.+++..+|+ +.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 344555555555555555555555555555554 4445555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
..|++++|+..|.+++.++|.+ ..+..++.++...|++.+|...++++.+
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555444 4444444444444554444444444443
No 89
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.6e-13 Score=116.91 Aligned_cols=103 Identities=26% Similarity=0.264 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
...+..++..|..++..|+|++|+..|++++..+| ++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35689999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 128 ARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
++..+|++++|+..|.+++..+|.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999874
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.57 E-value=8.7e-15 Score=132.40 Aligned_cols=117 Identities=15% Similarity=-0.002 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
+.+.+++.+|.+++..|+|++|+..|++++.++|+++.+++++|.++...|++++ +..|+++++++|++..+|+++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR 166 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~ 166 (227)
+..+|++++|+.+|+++++++|++ .++..++.++...+
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 999999999999999999999998 77778888875533
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.56 E-value=4.6e-15 Score=111.59 Aligned_cols=132 Identities=10% Similarity=-0.028 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
.+.++..|..++..|++++|+..|++++..+|+++.+++++|.++...|++++|+..|++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999999 8877766665533
Q ss_pred -HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 131 -RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 131 -~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..+....|+..|++++.++|++ ..+..++.++...|++.+|...+++..+..+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 3334445899999999999998 7888999999999999999999998887664
No 92
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=2.4e-13 Score=110.70 Aligned_cols=135 Identities=16% Similarity=0.075 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV--YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
....+..+|.++...|++++|+..|++++..+|++.......+.+ +...|++++|+..|++++..+|+++.+|+.+|.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 456788888888888999999999988888888876544433332 233478888999999998888988888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEH-RRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~ 184 (227)
++..+|++++|...|++++.++|++ .++.+++.+....|+..++ ...++++.+..+.
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999988 7777888888888887664 4555666666554
No 93
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.56 E-value=1.4e-13 Score=112.77 Aligned_cols=132 Identities=20% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNP---TSAILYAAR------------AGVYVKLNKPNAAIRDAYVALETNP 116 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~------------g~~~~~~~~~~~A~~~~~~al~~~p 116 (227)
..+..+|..++..|++++|+..|.+++..+| .+..++..+ |.++...|++++|+..+++++..+|
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4455555555555555555555555555555 444444444 4555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 117 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.++.+++.+|.++...|++++|+..|.+++...|.+ ..+..++.++...|++.++...+++..+..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 666666666666666666666666666666666666 5555666666666666666666666655443
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.55 E-value=9.2e-14 Score=110.16 Aligned_cols=136 Identities=22% Similarity=0.199 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN--------PTSAILYAARAGVYVKLNKPNAAIRDAYVALET----- 114 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----- 114 (227)
+..+..+..+|..++..|++++|+.+|.+++... |..+.++.++|.++...|++++|+..|++++.+
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 4568899999999999999999999999999873 556789999999999999999999999999998
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 115 ---NPDSAKGYKIRGMARARLGQWEEAANDLHVASKL--------DYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 115 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
+|....+++.+|.++...|++++|+.+|++++.+ .|.. .++..++.++...|++.+|...+++..+..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999999999 5555 567799999999999999999998887654
Q ss_pred H
Q 041967 183 E 183 (227)
Q Consensus 183 ~ 183 (227)
+
T Consensus 200 ~ 200 (283)
T 3edt_B 200 H 200 (283)
T ss_dssp H
T ss_pred H
Confidence 4
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.55 E-value=5.1e-14 Score=114.42 Aligned_cols=134 Identities=17% Similarity=0.013 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCC----
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKL-NKPNAAIRDAYVALETNPDS---- 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~---- 118 (227)
.+..+..+|.++...|++++|+.+|++++.+.|.. +.++.++|.+|... |++++|+.+|++++.+.|..
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 46789999999999999999999999999987653 56899999999996 99999999999999998754
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E-------IGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..++.++|.++..+|++++|+.+|++++.+.|.+ . .+..++.++...|++.+|...+++.....+
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999999999875 2 346788889999999999999988765444
No 96
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.55 E-value=1.4e-13 Score=111.69 Aligned_cols=134 Identities=10% Similarity=-0.005 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHH--------------HH-HHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMAL--------------KK-VEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
...|++++|+..|.+++..+|.+ ..+..+ +. +....|++.++...++++.+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 99999999999999999999987 444444 44 46778888889888887766544
No 97
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.8e-14 Score=111.42 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=114.0
Q ss_pred HHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967 62 ISEGKLEDAIGQLTEAIMLN----PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE 137 (227)
Q Consensus 62 ~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 137 (227)
...|+|++|+..|.+++... |.++.+++.+|.++...|++++|+..|++++.++|.++.+++.+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34578999999999999974 45678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 138 AANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 138 A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|+..|++++.++|.+ .++..++.++...|++.+|...++++.+..+.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999999999998 88889999999999999999999998876554
No 98
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.54 E-value=3.6e-13 Score=114.43 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 132 (227)
.++..|..++..|++++|+..|.+++..+|.++.++..+|.+|...|++++|+..|++++..+|.++.+++.+|.++...
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCh-HHHHHH------------HHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 133 GQWEEAANDLHVASKLDYDE-EIGMAL------------KKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
|++++|+..|++++.++|++ ..+..+ +.++...|++.+|...++++....+.
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999998 555444 78888999999999999888766543
No 99
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.7e-13 Score=117.99 Aligned_cols=129 Identities=12% Similarity=0.041 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 131 (227)
..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-H------HHHHHHHHHHh---hhhHHHHHHHHHHHHH
Q 041967 132 LGQWEEAANDLHVASKLDYDE-E------IGMALKKVEPN---ARRIQEHRRKYERLRK 180 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~~~~p~~-~------~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 180 (227)
.|++++|+..|.+++.+.|.+ . ++..++.++.. .|++.+|...++++..
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 555555555555555554443 2 44444555554 5555555555544443
No 100
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.53 E-value=3.5e-13 Score=116.93 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...++.+|..++..|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++..+|.+..+++.+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
..|++++|+..|.+++..+|.+ .++..++.++...|++.+|...++++.+..+.
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999998 78889999999999999999999998877664
No 101
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.6e-14 Score=99.48 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------AKGYK 123 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 123 (227)
.+..++.+|..++..|+|++|+..|++++..+|.++.+++++|.++...|++++|+..|++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 041967 124 IRGMARARLGQWEEAANDLHV 144 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~ 144 (227)
.+|.++..+|++..|+..+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988777665543
No 102
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.53 E-value=5.3e-13 Score=95.29 Aligned_cols=106 Identities=19% Similarity=0.077 Sum_probs=98.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967 79 MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA 157 (227)
Q Consensus 79 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~ 157 (227)
..+|.++..++.+|.+++..|++++|+..|++++.++|.++.+++.+|.++..+|+++.|+..|++++.++|++ .++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999998 78889
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 158 LKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++.++...|++.+|...++++....+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999988877664
No 103
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.52 E-value=6.3e-13 Score=117.03 Aligned_cols=134 Identities=13% Similarity=-0.056 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....+..+|..+...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++..+|.++.+|..+|.++
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 46788899999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhc------CCCh--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKL------DYDE--EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~------~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
...|++++|+..|++++.+ +|++ .++..++.++...|++++|...++++.+..+
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 9999999999999999888 6663 5677889999999999999999988876654
No 104
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.52 E-value=7.7e-13 Score=116.44 Aligned_cols=133 Identities=15% Similarity=0.068 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....+..+|..+...|++++|+..|.+++..+|.+..+|..+|.+|...|++++|+..|++++...|.+..+|+.+|.++
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
...|++++|+..|.+++..+|.+ .++..++.++...|++++|...++++.+..
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999988 678899999999999999999998887653
No 105
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.51 E-value=2.5e-13 Score=96.98 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H-------HH
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E-------IG 155 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~-------~~ 155 (227)
.+.++.++|.++++.|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|.+++.++|.+ . ++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999998864 1 34
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 156 MALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..++.++...|++.+|...|++.....+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5778888888999999998887765443
No 106
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.51 E-value=3.7e-13 Score=95.27 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967 87 LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA 165 (227)
Q Consensus 87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~ 165 (227)
.++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|++ .++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 478899999999999999999999999999999999999999999999999999999999999998 7788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 041967 166 RRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~ 184 (227)
|++.+|...+++..+..+.
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 9999999999888765543
No 107
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=3.3e-13 Score=100.01 Aligned_cols=104 Identities=17% Similarity=0.086 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967 81 NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALK 159 (227)
Q Consensus 81 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~ 159 (227)
++..+..++.+|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|++++.++|++ .++..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344678999999999999999999999999999999999999999999999999999999999999999998 7888999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 160 KVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.++...|++.+|...+++.....+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999877764
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.51 E-value=1.5e-13 Score=121.39 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
.|++++|+..|++++..+|+++.+++++|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 144 VASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 144 ~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++++++|++ ..+..++.++...|++.+|...+++..+..+.
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999998 77889999999999999999999998877554
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.50 E-value=8.4e-13 Score=92.75 Aligned_cols=102 Identities=26% Similarity=0.275 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....++..|..++..|++++|+..|.+++...|.++.+++.+|.++...|++++|+..+++++...|.+..+++.+|.++
T Consensus 34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC
Q 041967 130 ARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
...|++++|...|.+++..+|.
T Consensus 114 ~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 114 YKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999886
No 110
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.50 E-value=3.8e-13 Score=93.75 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967 68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 147 (227)
+.|+..|.+++..+|+++.+++++|.+++..|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCh
Q 041967 148 LDYDE 152 (227)
Q Consensus 148 ~~p~~ 152 (227)
+.|.+
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 98754
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.50 E-value=2.2e-13 Score=110.51 Aligned_cols=132 Identities=15% Similarity=0.082 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
+.+.+++.+|.++...|++++|+..|++++..+|+........+..+...++...|+..+++++..+|+++.+++.+|.+
T Consensus 149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~ 228 (287)
T 3qou_A 149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQ 228 (287)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 45678999999999999999999999999999998777788888888899999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
+...|++++|+..|.++++.+|++ .++..++.++...|+..++...|++...
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999985 4577999999999999999998876653
No 112
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=4.8e-13 Score=109.30 Aligned_cols=133 Identities=12% Similarity=-0.047 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI-LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
.....|...|..+...|++++|+..|++++...|.++. +|.++|.++...|++++|+..|++++..+|....+|...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 176 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999887 99999999999999999999999999999999888887776
Q ss_pred HHHH-cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 128 ARAR-LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 128 ~~~~-~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
+... .|+++.|...|++++..+|++ ..+..++......|++.+++..|+++...
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6543 799999999999999999998 78889999999999999999999888873
No 113
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=3.2e-13 Score=107.02 Aligned_cols=133 Identities=15% Similarity=0.048 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET----- 114 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----- 114 (227)
+..+..+..+|.++...|++++|+.+|.+++.. +|....++.++|.++...|++++|+..|++++.+
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999988 4666789999999999999999999999999998
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------------------
Q 041967 115 ---NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD------------------------------------------ 149 (227)
Q Consensus 115 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------------------------------------------ 149 (227)
.|....++..+|.++..+|++++|+..|.+++.+.
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 77778899999999999999999999999999862
Q ss_pred -------CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 150 -------YDE-EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 150 -------p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
|.. .++..++.++...|++.+|...+++..+
T Consensus 242 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 3456888888899999999888877653
No 114
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.5e-12 Score=106.35 Aligned_cols=137 Identities=14% Similarity=-0.028 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLIS-------EGKL-------EDAIGQLTEAIM-LNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
+..+..|+..|..+.. .|++ ++|+..|++|+. ++|++..+|..+|.++...|++++|+..|++++
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3567889999988874 5885 999999999999 799999999999999999999999999999999
Q ss_pred HhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHh
Q 041967 113 ETNPDSAK-GYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP-NARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 113 ~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.++|.++. +|..+|.++...|++++|...|.+++..+|.+ .++...+.+.. ..|++.+|...|++..+..+.
T Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~ 201 (308)
T 2ond_A 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 201 (308)
T ss_dssp TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999987 99999999999999999999999999999987 66554444433 368999999999988877664
No 115
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.47 E-value=1.1e-12 Score=86.78 Aligned_cols=85 Identities=24% Similarity=0.288 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+..++.+|..++..|+|++|+..|.+++..+|.++.+++++|.++...|++++|+..|++++.++|.++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 041967 129 RARLG 133 (227)
Q Consensus 129 ~~~~g 133 (227)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 87765
No 116
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=5.2e-12 Score=100.79 Aligned_cols=124 Identities=12% Similarity=-0.015 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
+.+++.+|..++..|++++|+.+|++++. |.++.+++++|.++.. .+++++|+.+|++++..+ ++.+++.+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 34455555555555555555555555554 3444555555555555 555555555555555443 445555555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Q 041967 127 MARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLR 179 (227)
Q Consensus 127 ~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 179 (227)
.++.. .+++++|+.+|++++..+ ...++..++.++.. .+++.+|...+++..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 55555 555555555555555442 11334444444444 455555555554443
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.47 E-value=6.4e-12 Score=101.79 Aligned_cols=137 Identities=9% Similarity=-0.065 Sum_probs=84.3
Q ss_pred HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC
Q 041967 45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA------ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS 118 (227)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 118 (227)
...+.....+...+..++..|+|++|+..|.+++...|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 69 YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 33444556666666666777777777777776666665543 234556666666666777777776666554332
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCh-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 119 ------AKGYKIRGMARARLGQWEEAANDLHVAS---KLDYDE-----EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 119 ------~~~~~~la~~~~~~g~~~~A~~~~~~a~---~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
..+++.+|.+|...|+++.|+.+|++++ ...|++ .+..+++.++...|++.+|...+++....
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3466666777777777777777776666 334432 23446666666666777666666665544
No 118
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=5.6e-13 Score=107.32 Aligned_cols=136 Identities=21% Similarity=0.148 Sum_probs=120.8
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh---
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET--- 114 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--- 114 (227)
..+..+..+..+|..++..|++++|+.+|.+++.+ .|....++..+|.++...|++++|+..+++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999999995 5667789999999999999999999999999988
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 115 -----NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD--------YDE-EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 115 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
.|....+++.+|.++...|++++|+..|.+++.+. |.. .++..++.++...|++.+|...+++...
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999984 333 4567899999999999999999988876
Q ss_pred H
Q 041967 181 E 181 (227)
Q Consensus 181 ~ 181 (227)
.
T Consensus 182 ~ 182 (311)
T 3nf1_A 182 I 182 (311)
T ss_dssp H
T ss_pred H
Confidence 6
No 119
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.46 E-value=8.6e-13 Score=107.13 Aligned_cols=134 Identities=13% Similarity=0.015 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-----
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----- 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----- 118 (227)
....+...|..+...|+|++|+.+|.+++.+.+. .+.++.++|.+|...|++++|+.+|++++.+.|..
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4456777788999999999999999999997532 25789999999999999999999999999998754
Q ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 119 -AKGYKIRGMARARL-GQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 119 -~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..++.++|.+|... |++++|+.+|++++.+.|.+ .++..++.++...|++.+|...+++.....+
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 46899999999996 99999999999999998753 3456889999999999999999988876543
No 120
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.6e-12 Score=108.99 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA- 119 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~- 119 (227)
...+..++.+|..++..|++++|+.+|.+++.+.+. .+.++.++|.++...|++++|+..|++++.+.+...
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 346789999999999999999999999999987443 246899999999999999999999999998865432
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC-CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 120 -----KGYKIRGMARARLGQWEEAANDLHVASK-----LD-YDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 120 -----~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
.+++++|.++..+|+++.|+.+|++++. .+ |.. .+...++.++...|++.+|...+++.....+
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999 45 555 5677999999999999999999988876543
No 121
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.45 E-value=2.1e-12 Score=95.48 Aligned_cols=101 Identities=17% Similarity=0.072 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPD-------SAK-----GYKIRGMARARLGQWEEAANDLHVASKL---- 148 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~---- 148 (227)
+..+.++|..++..|+|++|+..|+++|.++|+ +.. +|.++|.++..+|+|++|+.+|.+++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 467889999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCh-HHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967 149 ---DYDE-EIG----MALKKVEPNARRIQEHRRKYERLRKERELK 185 (227)
Q Consensus 149 ---~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (227)
+|++ ..| ...+..+..+|++++|...|++..+..+.+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9998 788 899999999999999999999999887754
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.45 E-value=4.6e-13 Score=91.58 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=95.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h-HHHH
Q 041967 80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD--E-EIGM 156 (227)
Q Consensus 80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-~~~~ 156 (227)
++|+++.+++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++.++|. + .++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368888999999999999999999999999999999999999999999999999999999999999999999 7 7788
Q ss_pred HHHHHHHhh-hhHHHHHHHHHHHHHH
Q 041967 157 ALKKVEPNA-RRIQEHRRKYERLRKE 181 (227)
Q Consensus 157 ~l~~~~~~~-~~~~~a~~~~~~~~~~ 181 (227)
.++.++... |++.+|...+.+....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999999 9999999999877643
No 123
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.44 E-value=5.2e-12 Score=102.75 Aligned_cols=129 Identities=9% Similarity=0.003 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH--H
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG--M 127 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~ 127 (227)
.+..++.+|..+...|++++|+..|.+ |.++.++..+|.++..+|++++|+..+++++..+|++....+..+ .
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~ 174 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVS 174 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHH
Confidence 345677777777777777777777766 667777777777777777777777777777777777654333222 2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
++...|++++|+..|++++..+|++ .++..++.++...|++.+|...++++....+
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2233467777777777777777776 5566777777777888888777777766544
No 124
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=3e-12 Score=107.59 Aligned_cols=134 Identities=18% Similarity=0.139 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHh------CCC
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----ILYAARAGVYVKLNKPNAAIRDAYVALET------NPD 117 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~ 117 (227)
...+..++..|..++..|+|++|+.+|++++...|.++ .+++.+|.+++..|++++|+..|++++.+ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 45678899999999999999999999999999999986 58999999999999999999999999988 577
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCh-HHHHHHHHHHHhhhh-----------------HHHHHH
Q 041967 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLD------YDE-EIGMALKKVEPNARR-----------------IQEHRR 173 (227)
Q Consensus 118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~-~~~~~l~~~~~~~~~-----------------~~~a~~ 173 (227)
...+++.+|.++...|++++|+.+|.+++.+. |.. .++..++.++...|+ +.++..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 77899999999999999999999999999983 333 456789999999999 888888
Q ss_pred HHHHHHHH
Q 041967 174 KYERLRKE 181 (227)
Q Consensus 174 ~~~~~~~~ 181 (227)
.+++....
T Consensus 205 ~~~~al~~ 212 (411)
T 4a1s_A 205 FYQENLKL 212 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776554
No 125
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.7e-12 Score=104.39 Aligned_cols=136 Identities=22% Similarity=0.227 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN---- 115 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---- 115 (227)
+..+..+..+|..++..|++++|+.+|.+++.. .|....++.++|.++...|++++|+..|++++.+.
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 456778999999999999999999999999987 35567899999999999999999999999999884
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 116 ----PDSAKGYKIRGMARARLGQWEEAANDLHVASKL--------DYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 116 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
|....+++.+|.++...|++++|+.+|++++.+ .|.. .++..++.++...|++.+|...++++....
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 556678999999999999999999999999998 5555 557789999999999999999998887654
Q ss_pred H
Q 041967 183 E 183 (227)
Q Consensus 183 ~ 183 (227)
+
T Consensus 226 ~ 226 (311)
T 3nf1_A 226 H 226 (311)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.43 E-value=2.3e-12 Score=93.40 Aligned_cols=134 Identities=12% Similarity=0.028 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---- 118 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---- 118 (227)
..+..+..+|..++..|++++|+.+|.+++...+.. ..++.++|.++...|++++|+..+++++.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 467899999999999999999999999999876542 2589999999999999999999999999876543
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---h----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYD---E----EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
..+++.+|.++...|++++|+..+++++.+.+. . .....++.++...|++.+|...+++..+..
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999987432 1 234588889999999999999998776544
No 127
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.42 E-value=4.9e-12 Score=93.44 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALET------------------NPDSAKGYKIRGMARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 146 (227)
+..+..+|..++..|+|.+|+..|.+++.+ +|.+..+|+++|.|+..+|+++.|+.+|.+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999999 77778999999999999999999999999999
Q ss_pred hcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967 147 KLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN 186 (227)
Q Consensus 147 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (227)
.++|.+ .++..++.++...|++.+|...++++....+...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999 7788999999999999999999999988877644
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=3.6e-12 Score=96.65 Aligned_cols=134 Identities=10% Similarity=0.013 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh---CCCC--
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET---NPDS-- 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~-- 118 (227)
.+..+..+|..++..|++++|+.+|.+++.. .|..+.++.++|.++...|++++|+..+++++.+ .+++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 5789999999999999999999999999983 3445678999999999999999999999999988 4433
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYD--E-----EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..+++.+|.++...|++++|+.++++++.+.+. + .+...++.++...|++.+|...+++.....+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999976432 1 1235889999999999999999987775544
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.40 E-value=5.5e-12 Score=104.65 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
.+..++.+|.+++..|+|++|+.+|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|.+..++..+|.++
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHH-HHHHHHHHh
Q 041967 130 ARLGQWEEA-ANDLHVASK 147 (227)
Q Consensus 130 ~~~g~~~~A-~~~~~~a~~ 147 (227)
..+|++.+| ...|.+++.
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 999999988 445666554
No 130
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=1e-11 Score=100.34 Aligned_cols=132 Identities=16% Similarity=0.130 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh------CCCCH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----AILYAARAGVYVKLNKPNAAIRDAYVALET------NPDSA 119 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~ 119 (227)
....++..|..++..|++++|+.+|++++...|.+ ..++..+|.++...|++++|+..+++++.+ .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45788999999999999999999999999999998 468899999999999999999999999887 45557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhh--------------------HHHHH
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARR--------------------IQEHR 172 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~--------------------~~~a~ 172 (227)
.+++.+|.++...|++++|+..|.+++.+.|.. .++..++.++...|+ +.++.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 799999999999999999999999999886542 145688899999999 88888
Q ss_pred HHHHHHHHH
Q 041967 173 RKYERLRKE 181 (227)
Q Consensus 173 ~~~~~~~~~ 181 (227)
..+++....
T Consensus 164 ~~~~~a~~~ 172 (338)
T 3ro2_A 164 DLYEENLSL 172 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776544
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.40 E-value=5.9e-12 Score=88.72 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967 81 NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALK 159 (227)
Q Consensus 81 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~ 159 (227)
.|.+..+++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++.++|.+ .++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 355688999999999999999999999999999999999999999999999999999999999999999998 7788999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 160 KVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.++...|++.+|...+++..+..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 9999999999999999888766554
No 132
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=5.7e-12 Score=107.87 Aligned_cols=133 Identities=19% Similarity=0.059 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML---------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN------ 115 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------ 115 (227)
+..+..+|.++...|++++|+.+|++|+++ +|....+|.++|.+|..+|++++|+.++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456788999999999999999999999986 67778899999999999999999999999999873
Q ss_pred --CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q 041967 116 --PDSAKGYKIRGMARARLG--QWEEAANDLHVASKLDYDE-EIGMALKKVEPNA---RRIQEHRRKYERLRKERE 183 (227)
Q Consensus 116 --p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~ 183 (227)
+..+.++..+|.++...| +|++|+.+|++++.++|++ ..+..++.+.... ++..++...++++.+..+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 456788999998887765 6999999999999999998 6666666665444 344566666666655433
No 133
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=2.6e-12 Score=107.73 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-------H
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIML---NPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-------A 119 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~ 119 (227)
.++..|..++..|+|++|+.+|.+++.+ .++ .+.+++++|.+|...|+++.|+.++.+++.+.+.. .
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4566999999999999999999999987 233 46799999999999999999999999999985443 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
.++..+|.++..+|++++|+.+|.+++.+.+.. .++..++.++...|++.+|...++++...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999886542 25668999999999999999999888774
No 134
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.39 E-value=5.7e-13 Score=90.14 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=77.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967 54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI-LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132 (227)
Q Consensus 54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 132 (227)
.+..|..++..|+|++|+..|++++..+|.++. +++++|.++...|++++|+..|++++.++|++..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356788999999999999999999999999999 99999999999999999999999999999999888754
Q ss_pred CCHHHHHHHHHHHHhcCCCh
Q 041967 133 GQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 133 g~~~~A~~~~~~a~~~~p~~ 152 (227)
+.+.+++..|.++...+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 44566777777777766654
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.38 E-value=9.5e-12 Score=91.15 Aligned_cols=99 Identities=19% Similarity=0.143 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA- 128 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~- 128 (227)
....++.+|.+++..|+|++|+..|.+++..+|.++.+++++|.++...|++++|+..|++++.++|.+..++..++.+
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 125 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999988655555
Q ss_pred -HHHcCCHHHHHHHHHHHHhc
Q 041967 129 -RARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 129 -~~~~g~~~~A~~~~~~a~~~ 148 (227)
+...|++++|+..+.++..+
T Consensus 126 ~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 126 KIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHHH
Confidence 88899999999999877654
No 136
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=1e-11 Score=103.56 Aligned_cols=132 Identities=16% Similarity=0.121 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHh------CCCCH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----ILYAARAGVYVKLNKPNAAIRDAYVALET------NPDSA 119 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~ 119 (227)
.+..++..|..++..|+|++|+.+|++++...|.++ .++..+|.+++..|++++|+..+++++.+ .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 467889999999999999999999999999999984 68999999999999999999999999887 34556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhh--------------------HHHHH
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARR--------------------IQEHR 172 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~--------------------~~~a~ 172 (227)
.+++.+|.++...|++++|+.+|.+++.+.|.. .++..++.++...|+ +.+|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 799999999999999999999999999987653 246688999999999 89898
Q ss_pred HHHHHHHHH
Q 041967 173 RKYERLRKE 181 (227)
Q Consensus 173 ~~~~~~~~~ 181 (227)
..+.+....
T Consensus 168 ~~~~~al~~ 176 (406)
T 3sf4_A 168 DFYEENLSL 176 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776654
No 137
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=7.3e-11 Score=94.09 Aligned_cols=126 Identities=15% Similarity=0.072 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967 51 ANMTKLKAVDLIS----EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGY 122 (227)
Q Consensus 51 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 122 (227)
+.+++.+|..+.. .+++++|+..|++++..+ ++.+++++|.+|.. .+++++|+..|++++..+ ++.++
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 113 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGC 113 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHH
Confidence 4567777777777 778888888888877764 67777778888777 778888888888777763 67777
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHHHH
Q 041967 123 KIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLRKE 181 (227)
Q Consensus 123 ~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 181 (227)
+.+|.+|.. .+++++|+.+|++++..++ ......++.++.. .+++.+|...+++....
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 778888777 7788888888887777652 2455566777666 77777777777666543
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.37 E-value=1.3e-12 Score=99.83 Aligned_cols=128 Identities=11% Similarity=-0.059 Sum_probs=106.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----------------H
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----------------K 120 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~ 120 (227)
.+......|+|+.|...+.......+..+..+..+|.+++..|++++|+..|.+++.+.|.++ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 345555667888888888777666666788899999999999999999999999999999887 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 121 GYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+++++|.++..+|++++|+.+|.+++.++|.+ .++..++.++...|++.+|...++++....+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999998 77889999999999999999999998877654
No 139
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.37 E-value=3.8e-12 Score=104.03 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------ 118 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------ 118 (227)
+..+...|.++...|+|++|+.+|++++.+.+. .+.++.++|.+|.. |++++|+.+|++++.+.|..
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 456777777777778888888888887776432 13567777888777 88888888888887776543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 119 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
..++.++|.++..+|++++|+.+|++++.+.|.+ ..+..++.++...|++.+|...+++..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4567777888888888888888888887775532 123455566666677778877777665
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=9.7e-12 Score=110.20 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHh
Q 041967 47 MRDAANMTKLKAVDLISEGK----------LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN--KPNAAIRDAYVALET 114 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~ 114 (227)
.+....+|..++.++...|+ +++++..+.+++..+|++..+|+.++.++.+.+ ++++++..+++++++
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 34567889999999999888 999999999999999999999999999999999 669999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh--------------hhHHHHHHHHHHH
Q 041967 115 NPDSAKGYKIRGMARARLG-QWEEAANDLHVASKLDYDE-EIGMALKKVEPNA--------------RRIQEHRRKYERL 178 (227)
Q Consensus 115 ~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~--------------~~~~~a~~~~~~~ 178 (227)
+|.+..+|..++.++..+| .+++++.++.++++.+|.| .+|...+.+.... +.++++...+.++
T Consensus 139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999 8898888887774 6677777777777
Q ss_pred HHHHHh
Q 041967 179 RKEREL 184 (227)
Q Consensus 179 ~~~~~~ 184 (227)
....+.
T Consensus 219 i~~~P~ 224 (567)
T 1dce_A 219 FFTDPN 224 (567)
T ss_dssp HHHCSS
T ss_pred HhhCCC
Confidence 665554
No 141
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.36 E-value=3e-12 Score=87.30 Aligned_cols=73 Identities=21% Similarity=0.192 Sum_probs=65.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+|+++.+++++|.+++..|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.+.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999887653
No 142
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=2e-11 Score=102.26 Aligned_cols=132 Identities=16% Similarity=0.026 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-----
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD----- 117 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----- 117 (227)
.+..++.+|.+++..|+++.|+.++.+++...+. .+.++.++|.++...|++++|+..|++++.+.+.
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4555666666666666666666666666654322 1335556666666666666666666666554221
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 118 -SAKGYKIRGMARARLGQWEEAANDLHVASK-----LDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 118 -~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
...+++++|.++..+|+++.|+.+|++++. .+|.. .+...++.++...|++.+|...+++....
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 123555666666666666666666666666 44444 33445666666666666666666555443
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.5e-11 Score=87.16 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=98.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHH
Q 041967 80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIG 155 (227)
Q Consensus 80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~ 155 (227)
.+|.++..++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|.+++.++|.+ .++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 467789999999999999999999999999999999998 8999999999999999999999999999999998 778
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 156 MALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
..++.++...|++.+|...+++.....+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999888876554
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.35 E-value=1.4e-11 Score=99.80 Aligned_cols=128 Identities=13% Similarity=0.002 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-------CCCH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETN-------PDSA 119 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~ 119 (227)
.+..+|..++..+++++|+.+|.+++...+.. ..++.++|.+|...|++++|+.+|++++... +...
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 34446666666666666666666666643321 2356666666666666666666666666321 1123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARR-IQEHRRKYERLRK 180 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 180 (227)
.+++++|.+|..+|++++|+.++++++.+.+.. .++..++.++...|+ +++|...++++..
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 456666666666666666666666666654321 234466666666663 4666666655543
No 145
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.35 E-value=2.7e-11 Score=99.33 Aligned_cols=136 Identities=10% Similarity=-0.034 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCcHHHHHHHHHHHHhCCCCH
Q 041967 49 DAANMTKLKAVDLISEG--KLEDAIGQLTEAIMLNPTSAILYAARAGVY----VKL---NKPNAAIRDAYVALETNPDSA 119 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~ 119 (227)
+...+|..+|.++...+ ++++++..+.++|..+|.+..+|..++.++ ... +++++++..+.+++..+|.+.
T Consensus 65 ~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny 144 (306)
T 3dra_A 65 SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH 144 (306)
T ss_dssp TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH
Confidence 44567777888888777 888888888888888888888888888887 666 677888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHh
Q 041967 120 KGYKIRGMARARLGQWE--EAANDLHVASKLDYDE-EIGMALKKVEPNARR------IQEHRRKYERLRKEREL 184 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~ 184 (227)
.+|..++.++..+|.++ +++..+.+++..+|.| .+|...+.+....+. +.++...+.+.....+.
T Consensus 145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~ 218 (306)
T 3dra_A 145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ 218 (306)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC
Confidence 88888888888888777 7888888888888887 777777777777665 66666666666655443
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.35 E-value=5.3e-11 Score=82.46 Aligned_cols=105 Identities=22% Similarity=0.223 Sum_probs=94.0
Q ss_pred hCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967 80 LNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA 157 (227)
Q Consensus 80 ~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~ 157 (227)
.+|.. +.+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|.+++...|.+ ..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35555 77899999999999999999999999999999999999999999999999999999999999999988 77889
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 158 LKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++.++...|++.+|...+++.....+.
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999888766543
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.35 E-value=2.7e-11 Score=97.95 Aligned_cols=103 Identities=19% Similarity=0.072 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHH
Q 041967 82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKK 160 (227)
Q Consensus 82 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~ 160 (227)
|.++..++.+|..++..|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|.+++.++|++ .++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999 77889999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 161 VEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++...|++.+|...++++.+..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999988877663
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.34 E-value=2.4e-10 Score=92.44 Aligned_cols=123 Identities=14% Similarity=0.010 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHH---HhCCCCH--
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVAL---ETNPDSA-- 119 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~-- 119 (227)
...++..|..+...|++++|+.+|.+++...+.. ..+++++|.+|...|++++|+..|++++ ...|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 3456778999999999999999999999876543 5689999999999999999999999999 5566643
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHhhhhHHHHHH
Q 041967 120 --KGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-------IGMALKKVEPNARRIQEHRR 173 (227)
Q Consensus 120 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~ 173 (227)
.+++++|.+|..+|++++|+.+|++++.+.+... +...++.++...|++++|..
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~ 257 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIE 257 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 6899999999999999999999999999874321 12355666666666555543
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.34 E-value=3.2e-13 Score=116.70 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHH
Q 041967 65 GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---------------AKGYKIRGMAR 129 (227)
Q Consensus 65 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~ 129 (227)
++|++|+..|..++...|..+.++.++|.+++..|+|.+|+..|++++.++|.+ ..+|+++|.||
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888889899999999999999999999999999999999999 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..+|++++|+.+|.+++.++|++ .++..++.++...|++.+|...|+++.+..+
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999 7788999999999999999999998876654
No 150
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=1e-11 Score=103.55 Aligned_cols=135 Identities=11% Similarity=0.005 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---- 118 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---- 118 (227)
..+..+..+|.+++..|++++|+.+|.+++...|.. ..++.++|.++...|++++|+..+++++.+.|..
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 264 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence 446689999999999999999999999999876554 3389999999999999999999999999987766
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..++..+|.++...|++++|+.+|++++.+.+.. .++..++.++...|++.+|...+++..+..+
T Consensus 265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999985432 3456889999999999999999988876644
No 151
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=8.7e-12 Score=104.76 Aligned_cols=136 Identities=10% Similarity=-0.019 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---- 118 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---- 118 (227)
..+..+..+|..++..|++++|+.+|.+++.+.|.. ..++.++|.++...|++++|+..|++++.+.|..
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 345689999999999999999999999999987653 2389999999999999999999999999988754
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
..++..+|.++...|++++|+.+|++++.+.+.. .++..++.++...|++.+|...+++.....+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999986542 24668899999999999999999888766553
No 152
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.2e-11 Score=104.19 Aligned_cols=133 Identities=11% Similarity=0.002 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 51 ANMTKLKAVDLIS--EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK---LNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 51 ~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
+..+...|..++. .++|++|+.+|++++.++|+++.++.++|.+++. .+++++|+..+++++.++|+++.++..+
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l 215 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 4556667766654 5679999999999999999999999999988654 5778899999999999999999999999
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 126 GMARARL----GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 126 a~~~~~~----g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
|.++..+ |++++|...|++++.++|.+ .++..++.++...|++.++...+.++.+..+
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 8877665 56778999999999999998 7788999999999999999999988876654
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.34 E-value=4.1e-11 Score=82.30 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE 162 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~ 162 (227)
.+..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..+.+++.++|.+ .++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999998 7788999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHh
Q 041967 163 PNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
...|++.+|...+++.....+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhhHHHHHHHHHHHHHcCCC
Confidence 9999999999999888765443
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=1.5e-11 Score=86.00 Aligned_cols=105 Identities=18% Similarity=0.095 Sum_probs=97.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 041967 80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMAL 158 (227)
Q Consensus 80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l 158 (227)
.+|.++..++.+|.+++..|+++.|+..+++++..+|.+..+++.+|.++...|++++|+..|.+++..+|.+ .++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 3455678999999999999999999999999999999999999999999999999999999999999999998 778899
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 159 KKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+.++...|++.+|...+++..+..+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 99999999999999999888776553
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=1.2e-10 Score=95.52 Aligned_cols=133 Identities=8% Similarity=-0.091 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKL-EDAIGQLTEAIMLNPTSAILYAARAGVYVKLN--KPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
....+......++.|.+ ++|+.++.++|.++|.+..+|+.++.++...+ .+++++..++.++..+|.+..+|+.++.
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 34455555666677776 68999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HH----HHc---CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Q 041967 128 AR----ARL---GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQ--EHRRKYERLRKERE 183 (227)
Q Consensus 128 ~~----~~~---g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~ 183 (227)
++ ... +++.+++..+.+++..+|.| .+|...+.+....+.+. ++...+.++....+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 99 777 78999999999999999999 88999999999998887 88887777765544
No 156
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.32 E-value=2.2e-11 Score=80.45 Aligned_cols=83 Identities=25% Similarity=0.275 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 041967 83 TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV 161 (227)
Q Consensus 83 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~ 161 (227)
.++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|.+++.++|.+ .++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3577899999999999999999999999999999999999999999999999999999999999999998 666677766
Q ss_pred HHhh
Q 041967 162 EPNA 165 (227)
Q Consensus 162 ~~~~ 165 (227)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 157
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=5.2e-11 Score=92.19 Aligned_cols=127 Identities=15% Similarity=0.009 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN----KPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
.+.+++.+|..++..+++++|+..|+++++. .++.+++++|.+|.. + ++++|+.+|++++. +.++.+++++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~L 91 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVL 91 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHH
Confidence 5788999999999999999999999999875 578999999999988 6 89999999999964 5789999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHh----hhhHHHHHHHHHHHHHH
Q 041967 126 GMARAR----LGQWEEAANDLHVASKLDYD---EEIGMALKKVEPN----ARRIQEHRRKYERLRKE 181 (227)
Q Consensus 126 a~~~~~----~g~~~~A~~~~~~a~~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 181 (227)
|.+|.. .+++..|+.+|+++...+|. ..+...|+.++.. .+++.+|...+++....
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 999988 88999999999999999985 3667788888887 77889999988887654
No 158
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.31 E-value=2.9e-11 Score=98.74 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-----
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----- 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----- 118 (227)
....+...|..+...|+|++|+.+|.+++.+.+.. ..++.++|.+|..+|++++|+.+|++++.+.+..
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44566677899999999999999999999986532 5689999999999999999999999999885432
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 119 -AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 119 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..++.++|.+|.. |++++|+.+|++++.+.|.. .++..++.++...|++.+|...+++.....+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4688999999999 99999999999999997642 3456889999999999999999988877654
No 159
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.30 E-value=1.1e-11 Score=100.07 Aligned_cols=134 Identities=11% Similarity=0.004 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---- 118 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---- 118 (227)
..+..+..+|..++..|++++|+.+|.+++...+.. ..++.++|.++...|++++|+..+++++.+.+..
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence 345688999999999999999999999999875542 3489999999999999999999999999887665
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
..++..+|.++...|++++|+.+|++++.+.+.. .++..++.++...|++.+|...+++.....
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999886542 245688999999999999999998876543
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.30 E-value=3.5e-11 Score=84.03 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 126 (227)
.+..+..++.+|.+++..|+|++|+.+|++++..+|+++.+++++|.++...|++++|+..|++++...|+++.......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999987655443
Q ss_pred HH
Q 041967 127 MA 128 (227)
Q Consensus 127 ~~ 128 (227)
.+
T Consensus 103 ai 104 (117)
T 3k9i_A 103 AI 104 (117)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 161
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.3e-10 Score=97.30 Aligned_cols=129 Identities=16% Similarity=0.025 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----hCCC
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALE-----TNPD 117 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~ 117 (227)
..+..+..+|.++...|+|++|+.+|.+++.+.+. .+.++.++|.+|...|++++|+..|++++. .+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 45788999999999999999999999999986431 246899999999999999999999999999 7888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----h-HHHHHHHHHHHhhhh---HHHHHHHHHH
Q 041967 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----E-EIGMALKKVEPNARR---IQEHRRKYER 177 (227)
Q Consensus 118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~-~~~~~l~~~~~~~~~---~~~a~~~~~~ 177 (227)
...+++.+|.++..+|++++|+.++++++.+.+. . .....++.+....++ +.++...+++
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998543 2 223455555555555 4455544433
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=4.2e-11 Score=84.32 Aligned_cols=99 Identities=11% Similarity=-0.066 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMAL 158 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l 158 (227)
.+++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|.+++..+|++ .++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999998 899999999999999999999999999999986 336689
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 159 KKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+.++...|++.+|...++++.+..+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999998877654
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.27 E-value=1.8e-10 Score=95.22 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHh
Q 041967 47 MRDAANMTKLKAVDLISEGK----------LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK--PNAAIRDAYVALET 114 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~ 114 (227)
++....+|..++.++...+. +++++.++..++..+|.+..+|..++.++...+. +++++..+.+++..
T Consensus 60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~ 139 (331)
T 3dss_A 60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 139 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence 34556788888888877665 7899999999999999999999999999999994 89999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh--------------hhHHHHHHHHHHH
Q 041967 115 NPDSAKGYKIRGMARARLGQ-WEEAANDLHVASKLDYDE-EIGMALKKVEPNA--------------RRIQEHRRKYERL 178 (227)
Q Consensus 115 ~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~--------------~~~~~a~~~~~~~ 178 (227)
+|.|..+|..++.++...|. +++++.++.+++..+|.| .+|...+.+.... +.+.++...+...
T Consensus 140 dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a 219 (331)
T 3dss_A 140 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219 (331)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999998 699999999999999999 8898888888776 5677777777777
Q ss_pred HHHHHh
Q 041967 179 RKEREL 184 (227)
Q Consensus 179 ~~~~~~ 184 (227)
....+.
T Consensus 220 i~~~P~ 225 (331)
T 3dss_A 220 FFTDPN 225 (331)
T ss_dssp HHHSTT
T ss_pred HHhCCC
Confidence 665554
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.26 E-value=1.6e-10 Score=95.44 Aligned_cols=138 Identities=8% Similarity=-0.043 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCCHHHHH
Q 041967 47 MRDAANMTKLKAVDLISEG--KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK-PNAAIRDAYVALETNPDSAKGYK 123 (227)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~ 123 (227)
.+....+|..++.++...+ .|++++.++.+++..+|.+..+|..++.+....|. +++++.++.++|..+|.|..+|.
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3346788999999999988 49999999999999999999999999999999998 59999999999999999999999
Q ss_pred HHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh-----------hhHHHHHHHHHH
Q 041967 124 IRGMARARL--------------GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA-----------RRIQEHRRKYER 177 (227)
Q Consensus 124 ~la~~~~~~--------------g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~-----------~~~~~a~~~~~~ 177 (227)
.++.++..+ +.+++++.++.+++.++|+| .+|..+..+.... +.++++...+..
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 999999988 45889999999999999999 7787676666554 567777777777
Q ss_pred HHHHHHh
Q 041967 178 LRKEREL 184 (227)
Q Consensus 178 ~~~~~~~ 184 (227)
+....+.
T Consensus 264 lle~~pd 270 (331)
T 3dss_A 264 LQELEPE 270 (331)
T ss_dssp HHHHCTT
T ss_pred HHhhCcc
Confidence 7666554
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.25 E-value=3.4e-10 Score=91.52 Aligned_cols=134 Identities=9% Similarity=-0.079 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-----
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI------LYAARAGVYVKLNKPNAAIRDAYVALETNPDS----- 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----- 118 (227)
....+...+..++..|+|++|+..|++++...+..+. .+..+|.++...+++++|+..|++++.+.+..
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 4556677789999999999999999999998877654 34468999988899999999999999975443
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC--h--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 119 -AKGYKIRGMARARLGQWEEAANDLHVASKLD----YD--E--EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 119 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..++..+|.+|..+|+++.|+.+|++++... .. . .++.+++.++...|++.+|...++++....+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999531 11 1 3456999999999999999999988876654
No 166
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.4e-10 Score=79.29 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
++..++.+|.+++..|++++|+..|++++.++|.++.+++++|.++..+|++++|+..|.+++.++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 367899999999999999999999999999999999999999999999999999999999999999986
No 167
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=1.8e-10 Score=100.75 Aligned_cols=132 Identities=12% Similarity=-0.046 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
....|...|..+...|++++|...|++++...|.++ .+|..+|.++.+.|++++|+..|++++...|.....+...+.+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 467899999999999999999999999999999986 5999999999999999999999999999999888888777766
Q ss_pred -HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 129 -RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 129 -~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
+...|+++.|...|+++++.+|++ .+|..++......|+..+++..|+++...
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 456999999999999999999998 88889999999999999999999888764
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.24 E-value=9.1e-11 Score=82.05 Aligned_cols=100 Identities=10% Similarity=0.045 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--------HHH
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE--------EIG 155 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--------~~~ 155 (227)
.+..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|.+++.+.|.+ .++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999998753 346
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 156 MALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
..++.++...|++.+|...+++.....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 6889999999999999999988876544
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=1.7e-10 Score=89.22 Aligned_cols=129 Identities=15% Similarity=-0.037 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCC--CCH
Q 041967 50 AANMTKLKAVDLISEG----KLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNP--DSA 119 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p--~~~ 119 (227)
.+.+++.+|..+.. + ++++|+.+|++++. +.++.+++++|.+|.. .+++.+|+.+|++++...| .++
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 125 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV 125 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence 46789999999988 6 99999999999965 5689999999999988 8999999999999999988 469
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-h-----hHHHHHHHHHHHHHH
Q 041967 120 KGYKIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPNA-R-----RIQEHRRKYERLRKE 181 (227)
Q Consensus 120 ~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~ 181 (227)
.+++.+|.+|.. .++++.|+.+|+++..+.+.......++.++..- | ++.+|...+++....
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999 8999999999999999933336777888887643 3 789999999877654
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.24 E-value=1e-11 Score=103.15 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA-RA 130 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 130 (227)
..++++|.+++..|+|++|+.+|.+++.++|+++.+|+++|.+|+.+|++++|+.+|++++.++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999998 45
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh
Q 041967 131 RLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
..+..+.+...|.+++...|.+
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCC
Confidence 5667788899999999999876
No 171
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.23 E-value=5.2e-11 Score=87.80 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=90.8
Q ss_pred HcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967 97 KLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW----------EEAANDLHVASKLDYDE-EIGMALKKVEPNA 165 (227)
Q Consensus 97 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~ 165 (227)
+.+.|++|+..+++++.++|+++.+|+++|.++..++++ ++|+..|+++++++|++ .++..++.++...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999875 59999999999999998 8888999999877
Q ss_pred h-----------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHH
Q 041967 166 R-----------RIQEHRRKYERLRKERELKNFERERQRKQAGADREAL 203 (227)
Q Consensus 166 ~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (227)
| ++++|...|++++..++..... .+..+.....|++-
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y-~~al~~~~ka~el~ 141 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY-LKSLEMTAKAPQLH 141 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHTHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHhCHhcc
Confidence 5 8999999999999998875444 55555556666543
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.23 E-value=1.4e-10 Score=96.39 Aligned_cols=122 Identities=14% Similarity=0.042 Sum_probs=81.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHH
Q 041967 60 DLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMARARL-G-QWE 136 (227)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~ 136 (227)
.....+..++|+.++.++|.++|.+..+|+.++.++...| .+++++..++.++..+|.+..+|..++.++..+ + ++.
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3333344456777777777777777777777777777776 477777777777777777777777777777766 6 667
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHH--------HHHHHHHHHHHH
Q 041967 137 EAANDLHVASKLDYDE-EIGMALKKVEPNARRIQ--------EHRRKYERLRKE 181 (227)
Q Consensus 137 ~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~ 181 (227)
+++..+.+++..+|.| .+|...+.+....+.+. ++...+.++...
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 7777777777777776 66666666666666555 555555555543
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.22 E-value=1.3e-11 Score=107.19 Aligned_cols=104 Identities=18% Similarity=0.142 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
..+..++.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --HHHcCCHHHHHHHHH-----------HHHhcCCCh
Q 041967 129 --RARLGQWEEAANDLH-----------VASKLDYDE 152 (227)
Q Consensus 129 --~~~~g~~~~A~~~~~-----------~a~~~~p~~ 152 (227)
+...|++++|+..+. +++.++|+.
T Consensus 118 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 118 NKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 889999999999999 888888763
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.21 E-value=1.4e-09 Score=90.45 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEG-KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL-N-KPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
....+|..++.++...| .+++++..+.++|..+|++..+|..++.++... + ++++++..+.+++..+|.|..+|..+
T Consensus 86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R 165 (349)
T 3q7a_A 86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYL 165 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45678999999999999 599999999999999999999999999999998 8 99999999999999999999999999
Q ss_pred HHHHHHcCCHH--------HHHHHHHHHHhcCC
Q 041967 126 GMARARLGQWE--------EAANDLHVASKLDY 150 (227)
Q Consensus 126 a~~~~~~g~~~--------~A~~~~~~a~~~~p 150 (227)
+.++..+|.++ +++.++.+++..+|
T Consensus 166 ~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 166 HWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence 99999998887 89999999988875
No 175
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.20 E-value=9.6e-11 Score=94.54 Aligned_cols=133 Identities=18% Similarity=0.071 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--AKGYKIRGMA 128 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 128 (227)
.+.....+..+...|+|++|.+.|..++...|... ..+.+|.++++.+++..|+..|+.++...+.. ..+++++|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 46777889999999999999999999999999888 99999999999999999999999887653221 3589999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC--CC-h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 129 RARLGQWEEAANDLHVASKLD--YD-E-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~--p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
+..+|++++|+.+|+++..-. |. . +....++.++..+|+.++|...++++....+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999998655 55 4 56789999999999999999999999877665
No 176
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.20 E-value=7.1e-11 Score=80.40 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--HHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--AKGYKIRG 126 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la 126 (227)
+.+..++.+|.+++..|+|++|+..|++++.++|+++.+|+++|.+|...|++++|+..|++++.+.|.. ......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999987643 33333344
Q ss_pred HHH
Q 041967 127 MAR 129 (227)
Q Consensus 127 ~~~ 129 (227)
..+
T Consensus 85 ~~l 87 (100)
T 3ma5_A 85 DAK 87 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.20 E-value=1.9e-10 Score=96.78 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
+..+..+..+|.+++..|+|++|+.+|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHH
Q 041967 128 ARARLGQWEEAAND 141 (227)
Q Consensus 128 ~~~~~g~~~~A~~~ 141 (227)
++..+++++++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877643
No 178
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=4.4e-10 Score=98.28 Aligned_cols=136 Identities=13% Similarity=-0.051 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLIS-------EGKLE-------DAIGQLTEAIM-LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
..+..|+..|..+.. .|+++ +|+..|++|+. .+|++..+|..+|.++...|++++|+..|++++.
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 456889999999886 79987 99999999997 8999999999999999999999999999999999
Q ss_pred hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHh
Q 041967 114 TNPDSA-KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV-EPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 114 ~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
++|.++ .+|..+|.++...|+++.|...|.+++...|.. ..+...+.+ ....|+..+|...|++..+..+.
T Consensus 350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~ 423 (530)
T 2ooe_A 350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 423 (530)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC
Confidence 999986 699999999999999999999999999998876 444433333 23588999999999988877664
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=8.3e-10 Score=97.83 Aligned_cols=134 Identities=18% Similarity=0.116 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHhCCCC
Q 041967 50 AANMTKLKAVDLISEGKL-EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK----------PNAAIRDAYVALETNPDS 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~ 118 (227)
...............|++ ++|+..+.++|..+|++..+|+.++.++...|. +++++..+++++..+|++
T Consensus 27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~ 106 (567)
T 1dce_A 27 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106 (567)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 334445555566677766 678999999999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Q 041967 119 AKGYKIRGMARARLG--QWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR-RIQEHRRKYERLRKERE 183 (227)
Q Consensus 119 ~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 183 (227)
..+|+.++.++..++ ++++++..+.++++++|.| .+|...+.+....+ .++++...+.+..+..+
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 999999999999999 7799999999999999999 88999999999888 77777777666654433
No 180
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.15 E-value=3.1e-10 Score=76.36 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967 88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAK-GYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA 165 (227)
Q Consensus 88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~ 165 (227)
.+.+|.+++..|++++|+..|++++..+|.++. +++.+|.++..+|++++|+.+|++++.++|++ .++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 367899999999999999999999999999999 99999999999999999999999999999998 44421
Q ss_pred hhHHHHHHHHHHHHHH
Q 041967 166 RRIQEHRRKYERLRKE 181 (227)
Q Consensus 166 ~~~~~a~~~~~~~~~~ 181 (227)
+.+.++...|++..+.
T Consensus 75 ~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4455555555544433
No 181
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.13 E-value=8.6e-10 Score=83.33 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=98.0
Q ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcC
Q 041967 61 LISEGKLEDAIGQLTEAIMLNP-TSAILYAARAGVYVKLNKPNAAIRDAYVALE------TNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 61 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g 133 (227)
++..|+|++|...++.... +| ..+.++..+|.++...|++++|+..+++++. ..|....+++.+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4678999999996555444 55 5678999999999999999999999999998 34455678999999999999
Q ss_pred CHHHHHHHHHHHHhc---CCC---h--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 134 QWEEAANDLHVASKL---DYD---E--EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 134 ~~~~A~~~~~~a~~~---~p~---~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
++++|+.+|.+++.+ .++ . .+...++.++...|++.+|...+++.....
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999999998 442 2 335688999999999999999998877553
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.12 E-value=6.9e-10 Score=80.06 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC------
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPD------ 117 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------ 117 (227)
.+..+..+|..++..|++++|+.+|.+++...+.. ..++.++|.++...|++++|+..+++++.+.+.
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 34689999999999999999999999999876543 568999999999999999999999999987432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 150 (227)
...++..+|.++...|++++|+.++.+++.+..
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 246889999999999999999999999987754
No 183
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=2e-09 Score=89.45 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--------
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETN-------- 115 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------- 115 (227)
....+..+|..++..|++++|+..+.+++...|.. ..++.++|.++...|++++|+..+++++.+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 45678888999999999999999999999875542 2457889999999999999999999998875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE------EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 116 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
|....++..+|.++...|++++|...+.+++.+.+.. ..+..++.+....|++.+|...+++....
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3345678889999999999999999999999887752 34557888889999999999888777654
No 184
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=2e-09 Score=78.53 Aligned_cols=86 Identities=12% Similarity=-0.029 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 041967 67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETN-P-DSAKGYKIRGMARARLGQWEEAAND 141 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 141 (227)
...+.+.|.+.+..+|.+..+.+++|+++.+.+ ++++++..++.+++.+ | .+.+++|++|..+.++|+|+.|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777888888888899999999999999988 6779999999999999 7 5689999999999999999999999
Q ss_pred HHHHHhcCCCh
Q 041967 142 LHVASKLDYDE 152 (227)
Q Consensus 142 ~~~a~~~~p~~ 152 (227)
++++++++|+|
T Consensus 94 ~~~lL~ieP~n 104 (152)
T 1pc2_A 94 VRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCCCC
Confidence 99999999998
No 185
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.07 E-value=3.2e-09 Score=71.47 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 81 NPTSAILYAARAGVYVKLNK---PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 81 ~p~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+|.++.++..+|.+++..++ ..+|...+++++.++|+++.+++.+|..++..|+|.+|+.+|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68899999999999987766 7999999999999999999999999999999999999999999999999984
No 186
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=3.9e-09 Score=87.69 Aligned_cols=134 Identities=11% Similarity=-0.069 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-----ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---- 119 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---- 119 (227)
..+..+...|..++..|++++|+..+.+++...|... .++..+|.++...|++++|+..+++++.+.|...
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3567889999999999999999999999999887642 2688999999999999999999999998765432
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967 120 --KGYKIRGMARARLGQWEEAANDLHVASKLDY--------DE-EIGMALKKVEPNARRIQEHRRKYERLRKER 182 (227)
Q Consensus 120 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (227)
.+++.+|.++...|++++|+..|++++.+.+ .. .....++.++...|++.+|...+.+.....
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3478899999999999999999999998752 22 345578999999999999999998876553
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.07 E-value=3e-09 Score=92.50 Aligned_cols=130 Identities=16% Similarity=0.097 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CC
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET-----NP 116 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p 116 (227)
.+......+..+..+|+|++|+.+|++++.+ .|++ +..+.++|.+|..+|+|++|+..+++++.+ .|
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 387 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH 387 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 3455667778888999999999999999975 3444 568999999999999999999999999875 46
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCh-HH---HHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 117 DSA---KGYKIRGMARARLGQWEEAANDLHVASKL-----DYDE-EI---GMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 117 ~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~-~~---~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
+++ ..++++|.+|..+|++++|...|++|+.+ .|++ .+ ...+......++.+.++...|.++.
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 57899999999999999999999999986 5665 22 2366666667777777777776653
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.05 E-value=2.2e-09 Score=74.30 Aligned_cols=83 Identities=17% Similarity=0.018 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 102 NAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 102 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
+.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|.+ ..+..++.++...|++.+|...+++...
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999998 7788999999999999999999998887
Q ss_pred HHHh
Q 041967 181 EREL 184 (227)
Q Consensus 181 ~~~~ 184 (227)
..+.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.03 E-value=2.5e-09 Score=86.25 Aligned_cols=103 Identities=17% Similarity=0.001 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--CC-CHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN-PTS-AILYAARAGVYVKLNKPNAAIRDAYVALETN--PD-SAKGYK 123 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~ 123 (227)
... .++.+|..++..++|++|+.+|++++... |.. ..+++++|.++..+|++++|+..|++++.-. |. .+.+++
T Consensus 134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 344 88999999999999999999999887643 211 3589999999999999999999999999654 55 668999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
++|.++..+|+.++|...|++++..+|+.
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a~~P~~ 241 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQTTHPEP 241 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999999999983
No 190
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.99 E-value=3.6e-08 Score=85.26 Aligned_cols=128 Identities=14% Similarity=0.020 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCCHHH
Q 041967 50 AANMTKLKAVDLISE-----GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETNPDSAKG 121 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~ 121 (227)
...+++.+|..+... +++++|+..|.++++.. ++.+++++|.+|...| ++++|+.+|++++.. .++.+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a 365 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAA 365 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHH
Confidence 356778888888887 88999999999988764 5788889999988866 788999999999887 67899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHH
Q 041967 122 YKIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLRKER 182 (227)
Q Consensus 122 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 182 (227)
++.+|.+|.. .++++.|+.+|+++...++ ..++..++.++.. .++..+|...|++.....
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL-SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999 8999999999999988752 3667788888887 789999999998887766
No 191
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.97 E-value=5.8e-08 Score=83.94 Aligned_cols=125 Identities=10% Similarity=-0.040 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHH
Q 041967 50 AANMTKLKAVDLIS----EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKG 121 (227)
Q Consensus 50 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 121 (227)
.+.+++.+|..++. .+++++|+..|.++++. .++.+++.+|.+|.. .+++++|+.+|++++.. .++.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 45667777777776 67777777777777665 456677777777777 67777777777777654 46667
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Q 041967 122 YKIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLR 179 (227)
Q Consensus 122 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 179 (227)
++.+|.+|.. .+++++|+.+|+++...+ .......++.++.. .+++.+|...|++..
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7777777776 667777777777766653 12445566666554 556666666665554
No 192
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.94 E-value=1.7e-08 Score=69.20 Aligned_cols=76 Identities=9% Similarity=-0.088 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLN-------PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK 123 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 123 (227)
+..++.+|..++..++|..|+.-|++|+... +..+.++..+|.|++++|+++.|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 5677888999999999999999999988753 234677888888888888888888888888888888888777
Q ss_pred HHH
Q 041967 124 IRG 126 (227)
Q Consensus 124 ~la 126 (227)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 766
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.90 E-value=1.9e-08 Score=86.54 Aligned_cols=123 Identities=12% Similarity=0.030 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 52 NMTKLKAVDLISEG---KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL----NKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 52 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
.+++.+|..+...| ++.+|+..|.++....|..+..++++|.+|... +++++|+.+|+++. |.++.++++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 46788888888888 888888888888888888888888888888655 68888888888887 788888888
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh-----hHHHHHHHHHHHH
Q 041967 125 RGMA-R--ARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNAR-----RIQEHRRKYERLR 179 (227)
Q Consensus 125 la~~-~--~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 179 (227)
+|.+ + ...+++++|+.+|+++...+ .......++.++. .| ++.+|...|++..
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 8887 4 46788888888888888654 2255667776665 44 7777777776655
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.86 E-value=5.4e-08 Score=81.02 Aligned_cols=136 Identities=18% Similarity=0.111 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----cHHHHH----HHH--HHHHhCCC
Q 041967 51 ANMTKLKAVDLISEGK---LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK----PNAAIR----DAY--VALETNPD 117 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~----~~~A~~----~~~--~al~~~p~ 117 (227)
+-.++.+|..++..++ +.+|+.+|++|++++|+++.++..++.||..... ....+. .+. .++..+|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 4567778888887655 5899999999999999999999999998864211 111111 122 23366799
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKN 186 (227)
Q Consensus 118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (227)
.+.+|..++.++...|+++.|+..+++++.++|+...+..++.++...|++++|...|.++....+..+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999999999999999998766677899999999999999999999988877643
No 195
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.85 E-value=1.2e-07 Score=77.40 Aligned_cols=129 Identities=14% Similarity=-0.066 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----CHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNP--TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD----SAKGYKIR 125 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l 125 (227)
..++..|.++...|++++|+..+.++|..+| .+..++...+.+++.+|+++.|...+++....+|+ +-.....+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 4557999999999999999999999999987 78899999999999999999999999999999994 23344444
Q ss_pred --HHHHHHcC--CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 126 --GMARARLG--QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 126 --a~~~~~~g--~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
|.+....| ++.+|...|+.+....|+. .....+. +....|++.+|...++.+.+.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Confidence 44466667 9999999999999999873 2223333 889999999999999876554
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.84 E-value=8.6e-08 Score=68.97 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 041967 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR----LGQWEEAAND 141 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 141 (227)
++++|+..|.++.+..... +. +|.+|...+.+++|+.+|+++... .++.+++++|.+|.. .+++..|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 3445555555555443222 22 455554444455555555555444 344555555555554 4455555555
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHH
Q 041967 142 LHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERL 178 (227)
Q Consensus 142 ~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 178 (227)
|+++.... .......++.++.. .++..+|...+++.
T Consensus 84 ~~~Aa~~g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 84 YSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHcCC-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 55554441 11333444444444 44444444444443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.81 E-value=1e-07 Score=68.60 Aligned_cols=90 Identities=16% Similarity=0.051 Sum_probs=84.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR- 131 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 131 (227)
+|..+...+.+++|+..|+++.+. .++.+++++|.+|.. .+++.+|+.+|+++... .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 888888888999999999999987 579999999999999 89999999999999987 689999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhcCC
Q 041967 132 ---LGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 132 ---~g~~~~A~~~~~~a~~~~p 150 (227)
.++++.|+.+|+++.....
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999999999999864
No 198
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.79 E-value=1.2e-07 Score=64.82 Aligned_cols=69 Identities=14% Similarity=-0.106 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALETN-------PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
++.-.+.+|..++..++|..|+.+|+.|+... +....++..+|.++..+|+++.|+..+++++.+.|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 45678899999999999999999999999863 3457899999999999999999999999999999998
No 199
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.77 E-value=7.9e-08 Score=82.65 Aligned_cols=90 Identities=14% Similarity=-0.023 Sum_probs=41.3
Q ss_pred HHHHHHHHH-H--HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHhCCCCHHHHH
Q 041967 52 NMTKLKAVD-L--ISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-----KPNAAIRDAYVALETNPDSAKGYK 123 (227)
Q Consensus 52 ~~~~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~ 123 (227)
.+++.+|.. + ...+++++|+..|.++++.. ++.+++++|.+|. .| ++.+|+.+|++++ |.++.+++
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~ 322 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADY 322 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHH
Confidence 344444444 2 23444455555554444322 4444444554444 22 4455555555444 44455555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHh
Q 041967 124 IRGMARAR----LGQWEEAANDLHVASK 147 (227)
Q Consensus 124 ~la~~~~~----~g~~~~A~~~~~~a~~ 147 (227)
++|.+|.. ..++..|+.+|+++..
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 55544443 2245555555555444
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.77 E-value=5.4e-08 Score=65.36 Aligned_cols=69 Identities=20% Similarity=0.110 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC
Q 041967 50 AANMTKLKAVDLISEGK---LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 118 (227)
+++.+...|..++..++ .++|...+++++..+|+++.+++.+|..++..|+|++|+..+++++..+|..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 47889999999986665 7999999999999999999999999999999999999999999999999984
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.74 E-value=4.2e-08 Score=84.05 Aligned_cols=96 Identities=8% Similarity=-0.056 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCCCH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET-----NPDSA 119 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 119 (227)
.....+......|+|++|+.+|++++.+ .|++ +..+.++|.+|..+|+|++|+..+++++.+ .|+++
T Consensus 300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 379 (433)
T 3qww_A 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL 379 (433)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3344445555678999999999999974 4444 467999999999999999999999999875 45555
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 120 ---KGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 120 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
..++++|.+|..+|++++|+..|++|+.+
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999986
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.71 E-value=2.9e-07 Score=78.79 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCC
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET-----NPD 117 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~ 117 (227)
..........+..+|+|++|+..|+++++. .|++ ...+.++|.+|..+|+|++|+..+++++.+ .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 455566667788899999999999999975 3444 568999999999999999999999999865 355
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 118 SA---KGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 118 ~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
++ ..++++|.+|..+|++++|+..|++|+.+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55 57899999999999999999999999986
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=5.4e-07 Score=75.92 Aligned_cols=136 Identities=7% Similarity=-0.066 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNP----- 116 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----- 116 (227)
.....++..+|..+...|+|++|+.+|.+++...+.. ..++..+|.++...|+++.|+..++.++...+
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 3456789999999999999999999999999875543 23566788888888999999999999987642
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 117 -DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD------E-EIGMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 117 -~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
....++.++|.++...|+|.+|...+++++..... . .+...++.++...|++.+|...+++......
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 33678999999999999999999999998876221 2 4566889999999999999999987765543
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.66 E-value=9.3e-08 Score=83.15 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=90.5
Q ss_pred ccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 43 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
+-+.++..+..+.++|.+|..+|+|++|+.+|+++|.. .|++ +..+.++|.+|..+|++++|+..|++|+.+
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33455678899999999999999999999999999974 3444 568999999999999999999999999864
Q ss_pred -----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 115 -----NPDSA---KGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 115 -----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
.|+++ .....++.++..++.+++|...|.++.+.
T Consensus 423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57776 46678999999999999999999987543
No 205
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.64 E-value=8.2e-07 Score=84.69 Aligned_cols=119 Identities=9% Similarity=-0.025 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-----------
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD----------- 117 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------- 117 (227)
+....|+..|..+...|++++|+..|.++ +++..|.+.|.++.+.|++++|+++|.++++..+.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 35678999999999999999999999876 78899999999999999999999999888766533
Q ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 118 ----------------SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 118 ----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
+...++.+|..+...|+|++|..+|.++ ..|..++.++.++|++.+|...++++.
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 2235666777777777777777777775 245566677777777777777776654
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.63 E-value=1.5e-07 Score=75.65 Aligned_cols=85 Identities=14% Similarity=0.030 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHH
Q 041967 67 LEDAIGQLTEAIMLNPT--SAILYAARAGVYVKL-----NKPNAAIRDAYVALETNPDS-AKGYKIRGMARAR-LGQWEE 137 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~ 137 (227)
...|...++++++++|+ +..+|..+|..|... |+.++|..+|++++.++|+. ...++.+|..++. .|+++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 48899999999999999 677999999999994 99999999999999999975 9999999999988 499999
Q ss_pred HHHHHHHHHhcCCC
Q 041967 138 AANDLHVASKLDYD 151 (227)
Q Consensus 138 A~~~~~~a~~~~p~ 151 (227)
|...+++++..+|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999887
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.62 E-value=1e-06 Score=71.91 Aligned_cols=132 Identities=9% Similarity=-0.070 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCCHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLN--KPNAAIRDAYVALETNPDSAKG 121 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~ 121 (227)
..+.+...+.++++.|+.+.|.+.+++....+|+ ....+..-|++.+..| ++..|...|+++....|++...
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~ 214 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ 214 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence 5677788889999999999999999999999983 2333433455576667 9999999999999888874332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 122 YKIRGMARARLGQWEEAANDLHVASKL----------DYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 122 ~~~la~~~~~~g~~~~A~~~~~~a~~~----------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
...+. ++..+|++++|...++.+.+. +|++ ....++..+....|+ ++.+.+.++.+..+.
T Consensus 215 ~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 215 LGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 33333 899999999999999988876 4777 555566666666776 555555666555443
No 208
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.61 E-value=7.4e-07 Score=62.76 Aligned_cols=90 Identities=11% Similarity=-0.027 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 041967 65 GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA---AIRDAYVALETN-P-DSAKGYKIRGMARARLGQWEEAA 139 (227)
Q Consensus 65 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 139 (227)
.....+...|.+.+..++.+..+.+++|+++.+..+... +|..++..+..+ | ...+.+|.+|..++++|+|..|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 445667778888888888899999999999999887666 999999999887 5 45689999999999999999999
Q ss_pred HHHHHHHhcCCChHH
Q 041967 140 NDLHVASKLDYDEEI 154 (227)
Q Consensus 140 ~~~~~a~~~~p~~~~ 154 (227)
.++..++++.|+|.-
T Consensus 95 ~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 999999999999833
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=2.7e-07 Score=67.29 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 50 AANMTKLKAVDLISEG---KLEDAIGQLTEAIMLN-P-TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
..++.|+.|.++.+.+ +.++++.+++..++.+ | ...+++|++|..+++.|+|.+|+.+++.+++++|+|..+...
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3688999999999988 6779999999999998 7 567899999999999999999999999999999999987766
Q ss_pred HHHH
Q 041967 125 RGMA 128 (227)
Q Consensus 125 la~~ 128 (227)
...+
T Consensus 111 k~~i 114 (152)
T 1pc2_A 111 ERLI 114 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=2e-07 Score=78.52 Aligned_cols=130 Identities=9% Similarity=0.020 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-----------------ILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
......|..++..|+|++|+..|.++++..|... .++.++|.+|...|++++|+..+.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4456778889999999999999999999888742 46889999999999999999999999987
Q ss_pred CCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 115 NPDSAK------GYKIRGMARARLGQWEEAANDLHVASKLDYD------E-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 115 ~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
.+.... +...+|.++...|+++.|+..+.+++.+.+. - .+...++.++...|++.+|...++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 665432 4556788888999999999999999876432 1 35668999999999999999999777654
No 211
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.39 E-value=2.5e-06 Score=62.70 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC---CC
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLN---PTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNP---DS 118 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~ 118 (227)
...++.....++..+.|+.|+-....++.+. |+. ..+++.+|.+++..++|..|...|+++|.+.- .+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567888899999999999999999977654 331 34788899999999999999999999876531 11
Q ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 041967 119 ----------------------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 161 (227)
Q Consensus 119 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~ 161 (227)
.+..|.++.||..++++.+|+..++......-+..+...|+++
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 2688999999999999999999887653333333555555554
No 212
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.37 E-value=1.4e-06 Score=74.43 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHH--------
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK-------- 123 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------- 123 (227)
.+|...|..++..|.|++|+.+|.++ ..|..+|.|+.++|++++|+..++++ .++..|-
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 36777777777777777777777765 34666777777777777777777776 2333333
Q ss_pred ----------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH--hhhhHHHHHHHH
Q 041967 124 ----------------------IRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP--NARRIQEHRRKY 175 (227)
Q Consensus 124 ----------------------~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~--~~~~~~~a~~~~ 175 (227)
.+..+|...|.+++|+..+++++.+++.. .++..++..+. +.++..++.+.|
T Consensus 190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34456777777777777777777777766 66666655553 355555555555
No 213
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.32 E-value=1.1e-05 Score=77.25 Aligned_cols=120 Identities=17% Similarity=0.041 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC---------------
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP--------------- 116 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------- 116 (227)
..+...|..++..|+|++|+.+|.++ ..|..+|.++.++|++++|+..++++....+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 46778999999999999999999996 4788999999999999999999998854433
Q ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH--HhhhhHHHHHHHHHHHH
Q 041967 117 ----------DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE--PNARRIQEHRRKYERLR 179 (227)
Q Consensus 117 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 179 (227)
.+++.+..++..|...|.+++|+..|++++.++|.+ ..+..++.++ .+.++..++.+.|....
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 134456677888999999999999999999999887 6665555554 34566666666664433
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.31 E-value=6.2e-06 Score=68.66 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=71.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 041967 79 MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMAL 158 (227)
Q Consensus 79 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l 158 (227)
..+|.++.++..++..+...|+++.|+..+++++.++|. ..+|..+|.++...|++++|+..|.+|+.++|........
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~ 349 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHH
Confidence 567899999999999999999999999999999999975 6788999999999999999999999999999998654443
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.22 E-value=2.4e-05 Score=70.64 Aligned_cols=135 Identities=8% Similarity=-0.070 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML-NPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
....|...+......|..+.|...|.+|+.. .+.....|...|....+.+ +++.|...|+.+++..|+.+..|..++.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3457888888888889999999999999987 4445677877888877775 4999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967 128 ARARLGQWEEAANDLHVASKLDYD---E-EIGMALKKVEPNARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~~p~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (227)
.....|+.+.|...|++++...|+ . .+|..........|+...+..-.+++....+.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999884 3 56777778888889888888777777766554
No 216
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.19 E-value=3.7e-05 Score=65.59 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHcCCcH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---------------------------SAILYAARAGVYVKLNKPN 102 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------------------~~~~~~~~g~~~~~~~~~~ 102 (227)
.+..|..+|.++.+.|+|++|++.|.++. +|. ++.-...++.+|.+.|.++
T Consensus 147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 147 NVSNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HTTCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HhhhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHH
Confidence 34577889999999999999999999982 221 1122223446788899999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 041967 103 AAIRDAYVALETNPDSAKGYKIRGMARARLG--QWEEAANDLH 143 (227)
Q Consensus 103 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~ 143 (227)
+|+..++.++.+++.+...+..+|.+|.+-. +..+.++.|.
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999988654 3444444444
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.19 E-value=4.9e-05 Score=68.61 Aligned_cols=114 Identities=9% Similarity=-0.069 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967 68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAI-RDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 146 (227)
......|++++...|.++.+|+..+..+...|+...|+ ..|++|+...|.+...|+.++......|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hcC-----------CC-----------h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 147 KLD-----------YD-----------E-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 147 ~~~-----------p~-----------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
... |. . .+|........+.|+...|+.-+.++.+.
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 752 53 2 35777777778888999999988887765
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.11 E-value=6.1e-06 Score=70.55 Aligned_cols=91 Identities=11% Similarity=0.006 Sum_probs=73.4
Q ss_pred CccccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967 40 SVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a 111 (227)
...+-+.++..+..+.++|.+|..+|+|++|+.++++++.. .|++ +..++++|.+|..+|++++|+..+++|
T Consensus 318 ~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 318 SERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp SCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455667788999999999999999999999999999964 3444 568999999999999999999999999
Q ss_pred HHh-----CCCCHH---HHHHHHHHHH
Q 041967 112 LET-----NPDSAK---GYKIRGMARA 130 (227)
Q Consensus 112 l~~-----~p~~~~---~~~~la~~~~ 130 (227)
+.+ .|+++. .+.+++.+..
T Consensus 398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 398 FDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 865 577764 4444555544
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.08 E-value=9.5e-06 Score=69.42 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=66.7
Q ss_pred ccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 43 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
+-+.++..+..+.++|.+|..+|+|++|+.+|+++|.. .|++ +..++++|.+|..+|++++|+..|++|+.+
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 34456678899999999999999999999999999974 3444 568999999999999999999999999875
Q ss_pred -----CCCCHHH
Q 041967 115 -----NPDSAKG 121 (227)
Q Consensus 115 -----~p~~~~~ 121 (227)
.|+++..
T Consensus 412 ~~~~lG~~Hp~~ 423 (433)
T 3qww_A 412 MEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTCTTCHHH
T ss_pred HHHHcCCCChHH
Confidence 4666643
No 220
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.08 E-value=6.5e-05 Score=53.06 Aligned_cols=71 Identities=7% Similarity=-0.024 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967 84 SAILYAARAGVYVKLNK---PNAAIRDAYVALETNPDS-AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
++.+.+++|+++.+..+ ..++|..++..++.+|.. .+.+|.+|..++++|+|..|.++...++++.|+|.-
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 67889999999999875 457999999999998854 689999999999999999999999999999999833
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.04 E-value=0.00013 Score=58.57 Aligned_cols=105 Identities=10% Similarity=-0.047 Sum_probs=85.7
Q ss_pred hCCCCHHHHHHHHHHHHH-----cCC------cHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q 041967 80 LNPTSAILYAARAGVYVK-----LNK------PNAAIRDAYVALETNPD--SAKGYKIRGMARARL-----GQWEEAAND 141 (227)
Q Consensus 80 ~~p~~~~~~~~~g~~~~~-----~~~------~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~ 141 (227)
.+|+++.+++..|..... .|. ...|...++++++++|+ +..+|..+|.+|... |+.+.|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456677777777776644 133 46799999999999999 566999999999996 999999999
Q ss_pred HHHHHhcCCC-h-HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHh
Q 041967 142 LHVASKLDYD-E-EIGMALKKVEPN-ARRIQEHRRKYERLRKEREL 184 (227)
Q Consensus 142 ~~~a~~~~p~-~-~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~ 184 (227)
|++++.++|+ + .+...++..+.. .++...+...+++.....+.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999999996 4 777788887766 58899999999888876554
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.99 E-value=4.3e-05 Score=53.69 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLED---AIGQLTEAIMLN-P-TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 124 (227)
..++.|..|..+.+..+... +|.++...+..+ | ..-.++|.+|..+++.|+|.+|+.+++.+++.+|+|..+...
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35788999999999988776 999999988876 5 456799999999999999999999999999999999987766
Q ss_pred HHHH
Q 041967 125 RGMA 128 (227)
Q Consensus 125 la~~ 128 (227)
...+
T Consensus 114 k~~i 117 (126)
T 1nzn_A 114 ERLI 117 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.99 E-value=0.0004 Score=49.66 Aligned_cols=72 Identities=7% Similarity=-0.021 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967 83 TSAILYAARAGVYVKLNK---PNAAIRDAYVALETNPDS-AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 83 ~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
-++...|++|+++.+..+ ..+++..++..+...|.. .+.+|.+|..++++|+|..|.++...+++++|+|.-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 468899999999999876 457999999999998854 579999999999999999999999999999999833
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.94 E-value=0.00016 Score=52.18 Aligned_cols=102 Identities=15% Similarity=-0.000 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967 50 AANMTKLKAVDLISEGKL------EDAIGQLTEAIMLNPTS--------AILYAARAGVYVKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 115 (227)
+.+.|+......-+.|+. +.-++.|++|+..-|-. ...|...|.. ...++.++|.+.|+.++.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence 578888888888888998 89999999999876642 4466667655 56799999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 116 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
..+.++|...|.-..+.|+...|.+.+.+++.+.|.+
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 8999999999999999999999999999999999987
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.71 E-value=0.00042 Score=48.90 Aligned_cols=79 Identities=14% Similarity=-0.010 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKL---EDAIGQLTEAIMLNPT-SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
.+.+.|+.|..+.+..+. ..++.++...+..+|. .-.+++.+|..++++|+|..|+.+++.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 357889999999998765 5799999999998884 467999999999999999999999999999999999876655
Q ss_pred HHH
Q 041967 126 GMA 128 (227)
Q Consensus 126 a~~ 128 (227)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.69 E-value=0.0014 Score=56.94 Aligned_cols=125 Identities=10% Similarity=-0.049 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------------------------
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV------------------------------------ 94 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~------------------------------------ 94 (227)
...|+..+..+...|+.+.|...|.+|+.. |.+...+...+..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 577888899999999999999999999999 9875544433332
Q ss_pred ----HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhH
Q 041967 95 ----YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG-QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRI 168 (227)
Q Consensus 95 ----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~ 168 (227)
+.+.++.+.|...|+++ ...+.....|...|.+....+ +++.|...|+.+++..|++ ..+..........|+.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 22356678888999998 444445677777787777666 5999999999999988886 5555555566677777
Q ss_pred HHHHHHHHH
Q 041967 169 QEHRRKYER 177 (227)
Q Consensus 169 ~~a~~~~~~ 177 (227)
..++.-|++
T Consensus 371 ~~aR~l~er 379 (493)
T 2uy1_A 371 ENARALFKR 379 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777755554
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.68 E-value=0.001 Score=47.58 Aligned_cols=79 Identities=14% Similarity=-0.010 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKL---EDAIGQLTEAIMLNPT-SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 125 (227)
..+..|+.|..+.+..+. ..++.+++..+...|. .-.++|.+|..++++|+|.+|..+++.+++..|+|..+....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 467889999999998865 5799999999998885 456899999999999999999999999999999998776654
Q ss_pred HHH
Q 041967 126 GMA 128 (227)
Q Consensus 126 a~~ 128 (227)
..+
T Consensus 118 ~~I 120 (144)
T 1y8m_A 118 SMV 120 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 228
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.62 E-value=0.0032 Score=54.60 Aligned_cols=125 Identities=11% Similarity=-0.058 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
...|...+......++.+.|...|.+| ...+.....|...|...+..+ +++.|...|+.+++..|+.+..|..++...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 466777777777788899999999999 433346677877787777766 699999999999999999999888889989
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
...|+.+.|...|+++. .. ..|..........|+...++.-+++...
T Consensus 365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999982 33 6677777777777887777776665554
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.52 E-value=0.008 Score=50.44 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCcHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------------------AILYAARAGVYVKLNKPNAAIR 106 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~g~~~~~~~~~~~A~~ 106 (227)
...+.+...|......|+...|...+.+|+.+.... ..+...++..+...|++..++.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 456777888888888999999999999999874321 1344466777888999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCChHHHHHHHHHH
Q 041967 107 DAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK-------LDYDEEIGMALKKVE 162 (227)
Q Consensus 107 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-------~~p~~~~~~~l~~~~ 162 (227)
.+..++..+|-+..+|..+-.++...|+..+|+..|+++-+ ++|..........+.
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987754 466655444444443
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.22 E-value=0.0018 Score=47.55 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CC-------------------CHHHHHHHHHHHHHcCCcHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLN------PT-------------------SAILYAARAGVYVKLNKPNAA 104 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~-------------------~~~~~~~~g~~~~~~~~~~~A 104 (227)
.++.+...|+.+|..++|..|...|.++|... +. +.+..|.++.||..+++++.|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 56789999999999999999999999998531 10 126889999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 105 IRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 105 ~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
+..++.+- .....++.-..+|.+|
T Consensus 142 i~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred HHHHhcCC-chhcCHHHHHHHHHHh
Confidence 99986542 2245677777777765
No 231
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.06 E-value=0.047 Score=47.36 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRGMARARLGQWEEAANDLHVASKL--DYDEEIGMALKKVE 162 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~l~~~~ 162 (227)
..|..+...|.+.|++++|...|+...... .-+...|..+-..|.+.|+.++|...|...... .|+...+..+-..+
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 344455555556666666666666555432 224445555555666666666666666655543 33334455555555
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 041967 163 PNARRIQEHRRKYERLRK 180 (227)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~ 180 (227)
.+.|+.++|..-++++..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHH
Confidence 666666666666655543
No 232
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.04 E-value=0.033 Score=48.32 Aligned_cols=107 Identities=8% Similarity=-0.020 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP-DSAKGYKIRGM 127 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~ 127 (227)
...|..+-..+.+.|++++|..+|.+.... .| +...|..+-..|.+.|+.++|...|+......- -+...|..+-.
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 346777888999999999999999998775 34 577788888999999999999999999887642 35667888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhc--CCChHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVASKL--DYDEEIGMAL 158 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~l 158 (227)
++.+.|+.++|...|++.-.. .|+......+
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 999999999999999987654 4554444444
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.97 E-value=0.0086 Score=43.22 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=82.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 78 IMLNPTSAILYAARAGVYVKLNKP------NAAIRDAYVALETNPDS--------AKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 78 l~~~p~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
+-..|++++.|.......-+.|+. ++-+..|++|+..-|-. ...|.++|.. ..+++.++|...|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 346899999999999999888999 89999999999877642 2356666754 67799999999999
Q ss_pred HHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 144 VASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 144 ~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
.|+.+.... -+|...+....+.|+...|++-+.+...-
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 999886655 67888889999999999999988777653
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.82 E-value=0.023 Score=45.01 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=59.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY 122 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 122 (227)
..+++.|+.++|+......++.+|.++.....+-..++-.|++++|...++.+.+++|.....-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 4578899999999999999999999999999999999999999999999999999999987643
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.61 E-value=0.11 Score=38.40 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=74.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--h---------------CCC
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE--T---------------NPD 117 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~---------------~p~ 117 (227)
...+..++-.|.|..|+-.+.. -+...+.+-.+.||.+.+++.+|+..++..++ . +|.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 4466778888999988876632 23567777789999999999999999999983 2 233
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967 118 SAK-GYKIRGMARARLGQWEEAANDLHVASKLDYDEEI 154 (227)
Q Consensus 118 ~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 154 (227)
+.+ .+..+|.++...|+.++|+.+|.......|-...
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 443 4555899999999999999999999998887633
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.011 Score=53.74 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967 66 KLEDAIGQLTEAIML--------NPTS----------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127 (227)
Q Consensus 66 ~~~~A~~~~~~al~~--------~p~~----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 127 (227)
+--+|+..+.++++. .+.+ ...+..-+..+...|+++-|+...++++..-|..-..|+.|+.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~ 379 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR 379 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 345677777777642 2222 2355566788888999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 041967 128 ARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 128 ~~~~~g~~~~A~~~~~~a~ 146 (227)
||..+|+|+.|+-.+..+.
T Consensus 380 vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 380 CHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccHHHHHHHHhcCC
Confidence 9999999999998888773
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.26 E-value=0.039 Score=47.84 Aligned_cols=81 Identities=10% Similarity=-0.103 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...+..+|....-...+..|..+|.+|+.+.|++..++..+|.+....|+.-.|+-+|-+++.....++.+.-++...+.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999888888988888888776
Q ss_pred H
Q 041967 131 R 131 (227)
Q Consensus 131 ~ 131 (227)
.
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 5
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.025 Score=51.44 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVA 111 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 111 (227)
..+...+..++.+|+|+.|+.+.++|+...|.+-..|+.++.||..+|+|+.|+-.++.+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456677888899999999999999999999999999999999999999999999887765
No 239
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.04 E-value=0.059 Score=46.67 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP 163 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~ 163 (227)
..+..+|........+..|..+|.+|+.+.|.+...|..+|.+....|+.-+|+-+|.+++....-. .+..++.....
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999999875444 55556655554
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.64 E-value=0.14 Score=40.55 Aligned_cols=59 Identities=17% Similarity=0.024 Sum_probs=56.2
Q ss_pred HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
..++.|....|+..+...|+.+|.+......+..+++-.|+++.|.+.++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45678999999999999999999999999999999999999999999999999999987
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.38 E-value=0.29 Score=41.05 Aligned_cols=94 Identities=11% Similarity=-0.103 Sum_probs=74.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC---CCCH----HHH
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETN---PDSA----KGY 122 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~----~~~ 122 (227)
.+|..++..|+|.+|+..+.+.+..... -...+.....+|...+++.++...+..+.... +..| ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6899999999999999999998874222 14567778899999999999999999886553 2333 344
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q 041967 123 KIRGMARA-RLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 123 ~~la~~~~-~~g~~~~A~~~~~~a~~~~ 149 (227)
..-|..+. ..++|..|..+|-.++.-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 55688888 8999999999999987543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.73 E-value=0.18 Score=42.10 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
..+....+..++..|++.+|+..+..++..+|.+-.++..+-.+++..|+..+|+..|+++..
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667788899999999999999999999999999999999999999999999999988754
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.11 Score=44.11 Aligned_cols=99 Identities=11% Similarity=-0.095 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC---CCCH---HHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETN---PDSA---KGYK 123 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~---~~~~ 123 (227)
.+..+|..++..|+++.|.+.|.++...... -...+.....++...+++..+...+.++-.+- +++. ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5678999999999999999999999876433 35788888899999999999999999986542 2221 3445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
..|..+...++|..|...|..++.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 5688888999999999999888766544
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.18 E-value=0.91 Score=40.80 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 83 TSAILYAARAGVYVKLNKPNAAIRDAYVA--------LETNPDSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 83 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a--------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
++...|..+|..+.+.++++.|+.+|.++ +.....+.+.+..++......|++..|...|.
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 45677777777777777777777777764 11123344444555555555555555554433
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.14 E-value=1.3 Score=37.61 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC-C----HHHHHHHHHHHHHcCCcHHHHHHHHHHHH---hCCCCH-
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML-NPT-S----AILYAARAGVYVKLNKPNAAIRDAYVALE---TNPDSA- 119 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~-~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~- 119 (227)
.+.....++..+...|+|.+|...+.....- ... + ..++......++..+++.+|...+.++-. ..+..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4566678899999999999999999987642 211 1 46788889999999999999999988632 234443
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 120 ---KGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 120 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
..+...|..+...++|.+|..+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 36667899999999999999999988765
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.47 E-value=1.7 Score=32.08 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=39.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
...+..|+++.|.+..... ++...|..+|...+..|+++-|..+|.++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4556779999998887654 567889999999999999999998887753
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.33 E-value=1.8 Score=32.00 Aligned_cols=118 Identities=14% Similarity=0.025 Sum_probs=86.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967 58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE 137 (227)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 137 (227)
-...++-.+|+.++-+-.- +.|..+.+...++.+++..|.+..++-.+ ..-+...+.+..+.||..+.+|..
T Consensus 9 I~Ks~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkk 80 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKK 80 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHH
Confidence 3455667888887654322 34445577777899999999999987665 233456788889999999999999
Q ss_pred HHHHHHHHH--hcC---------------CCh-HH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967 138 AANDLHVAS--KLD---------------YDE-EI-GMALKKVEPNARRIQEHRRKYERLRKERE 183 (227)
Q Consensus 138 A~~~~~~a~--~~~---------------p~~-~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (227)
|+.++.+.+ +++ |.+ +- ...++.++.+.|..+++...+....+...
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 999999999 333 344 33 34788999999999999999977765544
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.01 E-value=2.2 Score=40.27 Aligned_cols=99 Identities=10% Similarity=-0.090 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM-----LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYK 123 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 123 (227)
.-..+..+-..+.+.|+.++|..+|.+... ..| +...|..+-..|++.|++++|...|+...... .-+...|.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345688888999999999999999976442 344 57788889999999999999999999887654 33566777
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhcC
Q 041967 124 IRGMARARLGQ-WEEAANDLHVASKLD 149 (227)
Q Consensus 124 ~la~~~~~~g~-~~~A~~~~~~a~~~~ 149 (227)
.+-.++.+.|+ .++|...|......+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 78888999997 467877777666543
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.72 E-value=1.2 Score=42.40 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIML-----------------------NPTSAILYAARAGVYVKLNKPNAAIRDAY 109 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 109 (227)
.-|.+|.+++..|++++|..+|.++-.. ....+.+|......+-+.+.++.+++...
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3488999999999999999999887321 01124566777778888899999999999
Q ss_pred HHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967 110 VALETNPD-SA----KGYKIRGMARARLGQWEEAANDLHVAS 146 (227)
Q Consensus 110 ~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~a~ 146 (227)
.||..-+. .. ..|.++-..+..+|+|++|...+...-
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 99987643 32 267788889999999999988776544
No 250
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.70 E-value=4.8 Score=36.02 Aligned_cols=82 Identities=15% Similarity=-0.066 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA 130 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 130 (227)
...|...|..+++.++++.|+.+|.++-. +-.+..++...|+.+......+.+.... ... ....++.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-~~~----~A~~~~~ 747 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTG-KFN----LAFNAYW 747 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHH----HHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-chH----HHHHHHH
Confidence 46789999999999999999999998632 2223444555777766555555555432 221 1233566
Q ss_pred HcCCHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVA 145 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a 145 (227)
..|++++|++.|.++
T Consensus 748 ~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 748 IAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTCHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHc
Confidence 788888888877654
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.36 E-value=5.7 Score=33.19 Aligned_cols=130 Identities=10% Similarity=0.020 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------CCCC--------------------HH-
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML----------------------NPTS--------------------AI- 86 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------------~p~~--------------------~~- 86 (227)
.-.+.+.+|..+...|++++-..++...... -|++ ..
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999988877776554311 1221 11
Q ss_pred ---HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CChH
Q 041967 87 ---LYAARAGVYVKLNKPNAAIRDAYVALETNPD---S---AKGYKIRGMARARLGQWEEAANDLHVASKLD----YDEE 153 (227)
Q Consensus 87 ---~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~~~ 153 (227)
.-..+|..|+..|+|.+|+..+.+.+.--.. . .+++..-..+|..++++..+...|.++.... +...
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2237899999999999999999888764221 1 3577778899999999999999998886553 3221
Q ss_pred H----HHHHHHHHH-hhhhHHHHHHHHHHHH
Q 041967 154 I----GMALKKVEP-NARRIQEHRRKYERLR 179 (227)
Q Consensus 154 ~----~~~l~~~~~-~~~~~~~a~~~~~~~~ 179 (227)
+ ...-|..+. ..++|..|...|-...
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2 224455556 6888888888885554
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.13 E-value=1.4 Score=32.52 Aligned_cols=82 Identities=7% Similarity=-0.052 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 129 (227)
....|..+|...+..|+++-|..+|.++-. +..+...|.-.|+.++-....+.+...+. +.....++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~ 99 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNT 99 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHH
Confidence 456899999999999999999999998632 22244556667887776655555554431 22334567
Q ss_pred HHcCCHHHHHHHHHH
Q 041967 130 ARLGQWEEAANDLHV 144 (227)
Q Consensus 130 ~~~g~~~~A~~~~~~ 144 (227)
..+|++++++..|.+
T Consensus 100 l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 100 FYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 788999988877654
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.25 E-value=4.1 Score=38.90 Aligned_cols=116 Identities=13% Similarity=-0.018 Sum_probs=80.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH---hC------------------
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE---TN------------------ 115 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~------------------ 115 (227)
+...++..+.++-+.. .+...|.++...|-+|.+++..|++++|..+|+++-. .+
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3445566666665544 3456778888889999999999999999999988621 11
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H-----HHHHHHHHHHhhhhHHHHHHHHH
Q 041967 116 --PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E-----IGMALKKVEPNARRIQEHRRKYE 176 (227)
Q Consensus 116 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~-----~~~~l~~~~~~~~~~~~a~~~~~ 176 (227)
...+..|+....++...+.++.+++..+.|+...+.+ . .|..+=......+++++|...+-
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 1123466677788889999999999999999876543 2 23344445566777777755553
No 254
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=88.00 E-value=1.9 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 041967 46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAI 78 (227)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 78 (227)
.+.+.+..+-.++..+++.|.|++||.+..++.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 445678888889999999999999998887764
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.97 E-value=1.8 Score=37.52 Aligned_cols=66 Identities=12% Similarity=0.003 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
+..+..+-..|+..+.++.|.....++. .|.+ ...+|.+|.++...++|.+|..++..|++..|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 5677888899999999999999999885 3432 4678889999999999999999999999988753
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.52 E-value=0.84 Score=38.57 Aligned_cols=95 Identities=8% Similarity=-0.079 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---hHH----
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPD---SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD---EEI---- 154 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~---- 154 (227)
..++..+|..|+..|++..|...|.++...... -...++....++...+++..+...+.++..+... ...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346788999999999999999999998765433 2468888888999999999999999998766322 122
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967 155 GMALKKVEPNARRIQEHRRKYERLR 179 (227)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (227)
....+.++...+++..|...|-...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHh
Confidence 1234455567788888887775543
No 257
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=87.50 E-value=0.51 Score=29.28 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHHHhhhcHHHHhhhhhhhhhhhhhhhhhh
Q 041967 190 ERQRKQAGADREALSGLRDGMASDFFSLCFCN 221 (227)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 221 (227)
++...+++.||++..+++||.+..++.-+..|
T Consensus 10 ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~N 41 (71)
T 2llw_A 10 EETYQRAMKDPEVAAIMQDPVMQSILQQAQQN 41 (71)
T ss_dssp HHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHC
Confidence 34455677788888888888877777655443
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.04 E-value=15 Score=34.80 Aligned_cols=96 Identities=15% Similarity=-0.009 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALET----NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD--YDEEIGMALK 159 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~l~ 159 (227)
..|..+-..|++.|+.++|...|...... -.-+...|..+-..|++.|..++|...|.+..... |+--....+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35778888999999999999999764432 34567789999999999999999999999988764 5544444444
Q ss_pred HHHHhhhh-HHHHHHHHHHHHHH
Q 041967 160 KVEPNARR-IQEHRRKYERLRKE 181 (227)
Q Consensus 160 ~~~~~~~~-~~~a~~~~~~~~~~ 181 (227)
..+-+.|. .++|..-++.+...
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 45555565 45677777776544
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.32 E-value=3.8 Score=36.42 Aligned_cols=86 Identities=14% Similarity=0.008 Sum_probs=54.5
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 041967 61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAN 140 (227)
Q Consensus 61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 140 (227)
++..+...++...+.+.....+ +....-.++...++.|++..|..+|...-........+.|++|.++..+|+..+|..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~ 340 (618)
T 1qsa_A 262 LMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE 340 (618)
T ss_dssp SCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence 3334423444555555444333 222233344445567888888888876554434567788888998888999888888
Q ss_pred HHHHHHh
Q 041967 141 DLHVASK 147 (227)
Q Consensus 141 ~~~~a~~ 147 (227)
.|.++..
T Consensus 341 ~~~~~a~ 347 (618)
T 1qsa_A 341 ILHQLMQ 347 (618)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8887765
No 260
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=86.22 E-value=7 Score=28.25 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--H----H--HH-HHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS--A----I--LY-AARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~----~--~~-~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
....-+..|..+|..|+|-+|.+.++.+-...+.. . . +. ..-|..+.+.|+...|...+.+++.
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556788899999999999999999998876543 1 1 22 3334455667899999999988876
No 261
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=85.24 E-value=3.4 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+|..+...|++++|..+|.+|+.+.|..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 47888999999999999999999998886
No 262
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=83.07 E-value=3.2 Score=26.41 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
...+..+...|...=+.|+|++|+.+|..+++
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34667788888888888999888888888875
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.22 E-value=24 Score=31.24 Aligned_cols=127 Identities=10% Similarity=-0.064 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI----LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 128 (227)
.+...+...+..++.+.|...+.......+.+.. .+..++.-....+...++...+.......++....-+..+.
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~- 294 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM- 294 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-
Confidence 3455566677777999999999887654433332 22222323333343667788888766554443333333344
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967 129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRK 180 (227)
Q Consensus 129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (227)
....|++..|..+|.....-.... .....++......|+..++...|..+.+
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 446799999999998665432233 3455888888899999999998877764
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.54 E-value=2.9 Score=36.26 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS 118 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 118 (227)
.+..+..+-..|+..+.|++|..+..++. .|.. ..++|..|.++.-.++|.+|..++..|++..|.+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 35566777888999999999999999985 4432 5688889999999999999999999999988754
No 265
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=81.50 E-value=1.3 Score=26.52 Aligned_cols=23 Identities=0% Similarity=-0.012 Sum_probs=10.6
Q ss_pred HHHhhhcHHHHhhhhhhhhhhhh
Q 041967 193 RKQAGADREALSGLRDGMASDFF 215 (227)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~ 215 (227)
..++..||++..+++||.+..++
T Consensus 5 ~~kl~~dPe~~~~m~dP~~~~~l 27 (62)
T 2lnm_A 5 ISKIMENPDVAMAFQNPRVQAAL 27 (62)
T ss_dssp HHHHTTSHHHHHHTTSHHHHHHH
T ss_pred HHHHHcChHHHHHcCCHHHHHHH
Confidence 34444445444444444444433
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=79.94 E-value=4.3 Score=25.98 Aligned_cols=31 Identities=32% Similarity=0.271 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
..+..+...|...=..|+|++|+.+|..+++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777788888888888888888887775
No 267
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.04 E-value=4.7 Score=25.55 Aligned_cols=31 Identities=42% Similarity=0.409 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
..+..+...|...=+.|+|++|+.+|..++.
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566677777777888888888888877765
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.03 E-value=9.8 Score=23.52 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI 86 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 86 (227)
.......|..++..|++++|..+|-+|+..+|.=..
T Consensus 17 Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 17 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 445567899999999999999999999999887443
No 269
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=77.69 E-value=5.1 Score=35.86 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 133 (227)
......|...+..|+|.-|.+.++.++..+|+|..+...++.+|.++|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555555544444
No 270
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=77.31 E-value=4.9 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967 124 IRGMARARLGQWEEAANDLHVASKLDYDE 152 (227)
Q Consensus 124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 152 (227)
.+|..+...|+++.|+.+|.+|+.+.|..
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 47888888899999999899999888876
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=77.09 E-value=9.7 Score=28.51 Aligned_cols=81 Identities=10% Similarity=-0.079 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI-----LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK 123 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 123 (227)
......+-.|..++.+++|.+|...+..|+...|.... ++..+--+.+-+|.+.. ...+++ .+. ..|.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~ 84 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFA 84 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHH
Confidence 35678899999999999999999999999999887532 33334444456777543 222221 111 1355
Q ss_pred HHHHHHHHcCCHHH
Q 041967 124 IRGMARARLGQWEE 137 (227)
Q Consensus 124 ~la~~~~~~g~~~~ 137 (227)
.+..+ .+.|+...
T Consensus 85 ~L~~A-vr~Gdl~~ 97 (203)
T 3t5x_A 85 EVTRA-VSEGNLLL 97 (203)
T ss_dssp HHHHH-HHHTCHHH
T ss_pred HHHHH-HHhCCHHH
Confidence 55543 56677654
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=76.63 E-value=6.7 Score=33.44 Aligned_cols=86 Identities=10% Similarity=-0.069 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC----------CCH
Q 041967 66 KLEDAIGQLTEAIMLNPTS----------------AILYAARAGVYVKLNKPNAAIRDAYVALETNP----------DSA 119 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~----------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----------~~~ 119 (227)
..++|-..+.++....-++ .....++-.+|++.++..-+...+...-...+ ...
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4677888888888753221 11234567889999999998888865543322 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 041967 120 KGYKIRGMARARLGQWEEAANDLHVASKL-DYD 151 (227)
Q Consensus 120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~ 151 (227)
..+|.+|..+...++|.+|.+++..|+.. .|.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 58888999999999999999999999998 664
No 273
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.23 E-value=19 Score=25.62 Aligned_cols=82 Identities=20% Similarity=-0.003 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041967 64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVY-VKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDL 142 (227)
Q Consensus 64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 142 (227)
-|+...-+.+|-+. +..+. +..+|.-+ ...|.-++--..+...+.-++-++..++.+|.+|.+.|+..+|...+
T Consensus 74 C~NlKrVi~C~~~~---n~~se--~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NTLNE--HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp CSCTHHHHHHHHHT---TCCCH--HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcHHHHHHHHHHh---cchHH--HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 35566667766442 33222 33444433 45666666666666666777788999999999999999999999999
Q ss_pred HHHHhcCC
Q 041967 143 HVASKLDY 150 (227)
Q Consensus 143 ~~a~~~~p 150 (227)
.+|.+..-
T Consensus 149 ~~AC~kG~ 156 (172)
T 1wy6_A 149 IEACKKGE 156 (172)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhh
Confidence 98887653
No 274
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=74.48 E-value=6.4 Score=25.71 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT 83 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 83 (227)
........|..++..|+++.|+.+|-+|+..+|.
T Consensus 19 ~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 19 FFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4556678999999999999999999999988875
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.12 E-value=24 Score=32.99 Aligned_cols=89 Identities=12% Similarity=-0.032 Sum_probs=63.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCC-------------------
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE-TNP------------------- 116 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p------------------- 116 (227)
....++..|.++-|.. .+...|.++..-|-+|.+++..|++++|..+|++|-. +..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 5566777777765443 4566778888888899999999999999999987531 110
Q ss_pred -C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967 117 -D--SAKGYKIRGMARARLGQWEEAANDLHVASKLD 149 (227)
Q Consensus 117 -~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 149 (227)
. ...+|.....++...+-++-++...+.|+..-
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 1 11255667777778888888888888888653
No 276
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.57 E-value=22 Score=25.30 Aligned_cols=118 Identities=8% Similarity=0.041 Sum_probs=68.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------HH----HHHHHHHH--HHcCCcHHHHHHHHHHHHhC
Q 041967 56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSA--------------IL----YAARAGVY--VKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~----~~~~g~~~--~~~~~~~~A~~~~~~al~~~ 115 (227)
..|...+..|..++.++...+.....+-.. .+ +-.+|..+ -..|+....+.+| ...+
T Consensus 12 meAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~---~~~n 88 (172)
T 1wy6_A 12 MDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECG---VINN 88 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHH---HHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHH---HHhc
Confidence 345666778888888888888776655321 11 11222221 2346677777776 3343
Q ss_pred CCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967 116 PDSAKGYKIRGM-ARARLGQWEEAANDLHVASKLDY-DEEIGMALKKVEPNARRIQEHRRKYERL 178 (227)
Q Consensus 116 p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (227)
-.+. |+.+|. .+...|.-++-.+.+...+.-++ ..+....++..+.+.|+..++..-+.++
T Consensus 89 ~~se--~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 89 TLNE--HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CCCH--HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHH--HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3333 334443 45677777766666665434333 3466778888888888887777666444
No 277
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=73.38 E-value=7.9 Score=25.08 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...|...=..|+|++|+.+|..++.
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677777777788888888887777764
No 278
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=73.26 E-value=8.2 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...|...=..|+|++|+.+|..++.
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777777777888888888877765
No 279
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=73.08 E-value=16 Score=23.64 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSA------ILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
+..|..+|..|+|-+|.+.++..-...|... -+...-|..+...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4567888999999999999998888775421 1223334444556776 7777777765
No 280
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.78 E-value=10 Score=28.44 Aligned_cols=51 Identities=12% Similarity=-0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK-----GYKIRGMARARLGQW 135 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~ 135 (227)
..+.|.+|..++..++|.+|..++..|+...|.... .+..+-.+-.-+|.+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 467888999999999999999999999999887643 233344444556664
No 281
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.66 E-value=18 Score=33.88 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCC----------------------CHHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967 53 MTKLKAVDLISEGKLEDAIGQLTEAIM-LNPT----------------------SAILYAARAGVYVKLNKPNAAIRDAY 109 (227)
Q Consensus 53 ~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~----------------------~~~~~~~~g~~~~~~~~~~~A~~~~~ 109 (227)
.-|.+|..++..|++++|..+|++|-. +... ...+|......+-+.+-++-+++..+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 448899999999999999999998642 1111 12467777888888899999999999
Q ss_pred HHHHh-CCCCHH----HHHHHHHHHHH
Q 041967 110 VALET-NPDSAK----GYKIRGMARAR 131 (227)
Q Consensus 110 ~al~~-~p~~~~----~~~~la~~~~~ 131 (227)
.||.. .++++. .|.++-.+...
T Consensus 922 lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 922 LADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCccchHHHHHHHHHHHhh
Confidence 99964 445543 44444444433
No 282
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=67.36 E-value=11 Score=25.58 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
..+..+...|...=..|+|++|+.+|..++.
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556677777777777888888877777665
No 283
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=64.37 E-value=15 Score=32.87 Aligned_cols=52 Identities=8% Similarity=-0.080 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhH
Q 041967 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRI 168 (227)
Q Consensus 117 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~ 168 (227)
.-.......|...+..|+|..|.+....++..+|+| .+...+...+.++|.-
T Consensus 447 gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 447 GGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 445566677888888999999999999999999998 5566667777766643
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.57 E-value=14 Score=23.95 Aligned_cols=28 Identities=25% Similarity=0.050 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
+..+..++..+...|.|++||.+.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4566677777777777777777765544
No 285
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=63.37 E-value=56 Score=26.16 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAI 78 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al 78 (227)
+.++.+..-+.++++|++|++.+..+.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga 60 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA 60 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456777777888888888888755543
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.85 E-value=63 Score=26.22 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 117 DSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 117 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
.++..+..+|..|..-+++.+|..+|-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 346678888999999999999888874
No 287
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=59.05 E-value=20 Score=22.62 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=6.1
Q ss_pred HcCCHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVA 145 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a 145 (227)
..|+|.+|+..|..+
T Consensus 31 ~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 31 KEGNAEEAITNYKKA 45 (83)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 344444444444333
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=57.80 E-value=52 Score=27.94 Aligned_cols=68 Identities=4% Similarity=-0.176 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-CCCC
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP--T--------SAILYAARAGVYVKLNKPNAAIRDAYVALET-NPDS 118 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~ 118 (227)
.-....+-..||+.++...+...+...-...+ . -..++|.+|..++..++|.+|..++..|+.. .|..
T Consensus 176 l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 33445566889999999998888765433222 1 1568889999999999999999999999998 7755
No 289
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=52.30 E-value=84 Score=26.02 Aligned_cols=65 Identities=14% Similarity=-0.051 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 84 SAILYAARAGVYVKLNK--PNAAIRDAYVALET-----NPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
.|.++.++|.+.-...- ...++..|.++|.. +-.+.--|..+|-.+++.+++.+|+.++..+-..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 45666666666544322 22367777777654 2334556788888999999999999998877654
No 290
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=50.60 E-value=24 Score=22.17 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=5.6
Q ss_pred HcCCHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHV 144 (227)
Q Consensus 131 ~~g~~~~A~~~~~~ 144 (227)
..|+|.+|+..|..
T Consensus 23 ~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 23 KEGKVEDAITYYKK 36 (83)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 33444444443333
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.86 E-value=24 Score=22.02 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 52 NMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
-.....|..+...|+|+.|+.+|+.++.
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3344555666666677777777666664
No 292
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=54.17 E-value=3.7 Score=36.83 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA 103 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 103 (227)
++.....|..++..|+|..|..+.+.++..+|++..+...++.+|.++|.-.+
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 45677788999999999999999999999999999999999999988876444
No 293
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=47.83 E-value=57 Score=27.40 Aligned_cols=47 Identities=21% Similarity=0.144 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 67 LEDAIGQLTEAIMLNPT--------SAILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
|+..+..++.|+..-|. -..++..+|.+|+..+++++|+..++.+|.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45556666666665443 246788899999999999999999999985
No 294
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=47.76 E-value=53 Score=21.10 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP 82 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 82 (227)
..+..+...|..+++.++|.+|+.+|.++.....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 3567777788888888888888888888775543
No 295
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=45.91 E-value=1.1e+02 Score=25.76 Aligned_cols=64 Identities=8% Similarity=-0.051 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCC--cHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 85 AILYAARAGVYVKLNK--PNAAIRDAYVALET-----NPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
|.++.++|.+.--... ...++..|.+||.. .-.+.--|..+|-.+++.++|.+|+..+..+-..
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 4455555555433221 22355666666653 2334556778899999999999999999887654
No 296
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=45.51 E-value=26 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Q 041967 90 ARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 90 ~~g~~~~~~~~~~~A~~~~~~al 112 (227)
.+|+=|...|+|+.|+.+|+.++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHH
Confidence 34555555566666666555554
No 297
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=44.64 E-value=69 Score=21.52 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=6.1
Q ss_pred HHHHHHHHHhcCC
Q 041967 138 AANDLHVASKLDY 150 (227)
Q Consensus 138 A~~~~~~a~~~~p 150 (227)
|+..|..+++..+
T Consensus 44 Aie~l~~alk~e~ 56 (117)
T 2cpt_A 44 AVQYFLHVVKYEA 56 (117)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc
Confidence 3344455555553
No 298
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=44.06 E-value=76 Score=26.99 Aligned_cols=31 Identities=6% Similarity=-0.031 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 115 (227)
..++..+|.+|+..+++++|+..++.+|...
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4578889999999999999999999998643
No 299
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=43.10 E-value=63 Score=27.16 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 67 LEDAIGQLTEAIMLNPT--------SAILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
|+.-+..++.|+..-|. -..++..+|.+|+..|++++|+..++.+|.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34555566666654333 256788899999999999999999999986
No 300
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=42.81 E-value=96 Score=23.71 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=9.0
Q ss_pred HHHHHHH-cCCcHHHHHHHHHH
Q 041967 91 RAGVYVK-LNKPNAAIRDAYVA 111 (227)
Q Consensus 91 ~g~~~~~-~~~~~~A~~~~~~a 111 (227)
.+..|+. +++.++|+....++
T Consensus 178 ~SVF~yEil~~~~~A~~lAk~a 199 (234)
T 2br9_A 178 FSVFYYEILNSPDRACRLAKAA 199 (234)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3334433 34444444444443
No 301
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=41.20 E-value=68 Score=27.06 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 67 LEDAIGQLTEAIMLNPT--------SAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
|+.-+..++.|+..-|. -..++..+|.+|+..+++++|+..++.+|..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 45555556666654332 2467888999999999999999999999864
No 302
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=40.93 E-value=95 Score=24.16 Aligned_cols=23 Identities=35% Similarity=0.255 Sum_probs=10.3
Q ss_pred HHHHHHHH-cCCcHHHHHHHHHHH
Q 041967 90 ARAGVYVK-LNKPNAAIRDAYVAL 112 (227)
Q Consensus 90 ~~g~~~~~-~~~~~~A~~~~~~al 112 (227)
|.+..|+. +++.++|+....+++
T Consensus 202 NfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 202 NFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444 345555554444443
No 303
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=40.60 E-value=52 Score=21.76 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
.+..+...+....+.|+|++|...+.++-+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777778888888888888888877643
No 304
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=40.48 E-value=53 Score=21.65 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAI 78 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al 78 (227)
.+..+...+....+.|+|++|...+.++-
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56677778888888888888888887764
No 305
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=40.22 E-value=58 Score=20.91 Aligned_cols=45 Identities=16% Similarity=-0.107 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CHHHH-HHHHHHH
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SAKGY-KIRGMAR 129 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~-~~la~~~ 129 (227)
++.....|.-+++.++|.+|...|+++..+..+ -.+.+ |.++.|-
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 456666777777888888888888877654322 12333 5566654
No 306
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=40.06 E-value=1.6e+02 Score=24.95 Aligned_cols=64 Identities=8% Similarity=-0.051 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCC--cHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 85 AILYAARAGVYVKLNK--PNAAIRDAYVALET-----NPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
|.++.++|.+.-..-- -..++..|.++|.. .-.+.--|..+|-.+++.+++.+|+.++..+-.+
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 4444455544433211 11355566665543 2334556788899999999999999998877654
No 307
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=37.70 E-value=61 Score=21.60 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAI 78 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 78 (227)
-.+..+...+....+.|+|++|...+.++-
T Consensus 20 G~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 20 GNARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356777788888888899998888888774
No 308
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.53 E-value=93 Score=20.97 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967 101 PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDY 150 (227)
Q Consensus 101 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 150 (227)
+.+|..+..++|.++.. |.-...+..|..++..+.+++.+..
T Consensus 19 h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 45666666666666531 2222223335556666777777765
No 309
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=37.50 E-value=1.3e+02 Score=23.46 Aligned_cols=44 Identities=30% Similarity=0.296 Sum_probs=22.1
Q ss_pred HHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHH-cCCcHHHHHHHHHHH
Q 041967 69 DAIGQLTEAIM-----LNPTSAI---LYAARAGVYVK-LNKPNAAIRDAYVAL 112 (227)
Q Consensus 69 ~A~~~~~~al~-----~~p~~~~---~~~~~g~~~~~-~~~~~~A~~~~~~al 112 (227)
.|...|+.|+. +.|++|. ...|.+.+|+. +++.++|+....+++
T Consensus 153 ~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 153 STLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555555553 3455543 33344455554 355666665555544
No 310
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=35.93 E-value=68 Score=20.39 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLT 75 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~ 75 (227)
+.+..|+.-|..++..||+..|+.++.
T Consensus 37 ~mA~~Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 37 ERALNYRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456667777777777777777666653
No 311
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=35.84 E-value=66 Score=21.84 Aligned_cols=29 Identities=28% Similarity=0.121 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAI 78 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al 78 (227)
.+..++..+....+.|+|++|...+.++-
T Consensus 36 ~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~ 64 (120)
T 3l8r_A 36 NARSIVHEAFDAMREKNYILAEQKLQEAN 64 (120)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667777888888888888888888774
No 312
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=35.78 E-value=64 Score=20.49 Aligned_cols=29 Identities=10% Similarity=0.010 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 041967 48 RDAANMTKLKAVDLISEGKLEDAIGQLTE 76 (227)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 76 (227)
.+.+..|+.-|..++..||+..|+.++.=
T Consensus 32 l~mA~~Y~~Da~~fl~kGD~v~Ala~isY 60 (86)
T 2oo2_A 32 MRNIEAYISDSRYFLEKGDLVRAFECVVW 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35778888888888888888888877643
No 313
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=35.05 E-value=1.5e+02 Score=22.87 Aligned_cols=12 Identities=33% Similarity=0.277 Sum_probs=5.1
Q ss_pred CCcHHHHHHHHH
Q 041967 99 NKPNAAIRDAYV 110 (227)
Q Consensus 99 ~~~~~A~~~~~~ 110 (227)
++.++|....++
T Consensus 188 n~~~~Ac~lAk~ 199 (248)
T 3uzd_A 188 NAPEQACHLAKT 199 (248)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444333
No 314
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.39 E-value=2e+02 Score=23.94 Aligned_cols=96 Identities=11% Similarity=-0.090 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCChHH-
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALE-TNP-DS----AKGYKIRGMARARLGQWEEAANDLHVAS----KLDYDEEI- 154 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p-~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~----~~~p~~~~- 154 (227)
.....++..|...|++.+|...+..+.. ... .. ...+..-..++...+++..|...+.++. ...+....
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 4556789999999999999999988753 211 11 3577778889999999999999998863 22222222
Q ss_pred ---HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967 155 ---GMALKKVEPNARRIQEHRRKYERLRKE 181 (227)
Q Consensus 155 ---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (227)
....+.++...+++.++-..|..+...
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 346677778888888888888666544
No 315
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=33.94 E-value=90 Score=22.39 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967 102 NAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151 (227)
Q Consensus 102 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 151 (227)
..|+..+..+...+|......-.+..++..+.+....+..|...+..+|.
T Consensus 73 ~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 73 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 34666666667778877778888888888888888888777777777764
No 316
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=33.67 E-value=1.6e+02 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=8.9
Q ss_pred HHHHHHHc-CCcHHHHHHHHHH
Q 041967 91 RAGVYVKL-NKPNAAIRDAYVA 111 (227)
Q Consensus 91 ~g~~~~~~-~~~~~A~~~~~~a 111 (227)
.+..|+.. +++++|.....++
T Consensus 181 fSVFyyEiln~~~~Ac~lAk~A 202 (236)
T 3iqu_A 181 FSVFHYEIANSPEEAISLAKTT 202 (236)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 33444432 4445444444443
No 317
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.46 E-value=2e+02 Score=23.56 Aligned_cols=88 Identities=9% Similarity=-0.063 Sum_probs=59.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-------C
Q 041967 60 DLISEGKLEDAIGQLTEAIMLN-----------------PTSAILYAARAGVYVKLNKPNAAIRDAYVALET-------N 115 (227)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~ 115 (227)
+.-...+.++|++.+.+....- .....+...++..|+..|+...|...++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 4456679999999988764321 001345667788899999999999999887532 1
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967 116 PD-SAKGYKIRGMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 116 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 147 (227)
|. +...|...+..+...+++..+...+..++.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11 234555567778888998887766665554
No 318
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=33.30 E-value=1.8e+02 Score=23.13 Aligned_cols=94 Identities=10% Similarity=-0.072 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC--CCCHHHHHHHHHHHHHcCCcHH-HHHHHHHHHH----h---CC
Q 041967 50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM---LN--PTSAILYAARAGVYVKLNKPNA-AIRDAYVALE----T---NP 116 (227)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~--p~~~~~~~~~g~~~~~~~~~~~-A~~~~~~al~----~---~p 116 (227)
..+.++.-+..+++.|++..|..+..-.++ .. |-+......+..++.....-.. =....+.+++ . .-
T Consensus 52 AidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~ 131 (312)
T 2wpv_A 52 AIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKF 131 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTT
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCC
Confidence 456778888888889998888776444333 22 2244455555655544432221 1223333332 1 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967 117 DSAKGYKIRGMARARLGQWEEAANDLH 143 (227)
Q Consensus 117 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 143 (227)
.++..+..+|..+..-|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 468889999999999999999988875
No 319
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=30.70 E-value=1.4e+02 Score=25.48 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 67 LEDAIGQLTEAIMLNPT-----------SAILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~-----------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
|+.-+..++.|+..-|. -..++..+|.+|+..+++++|+..++.+|.
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666654332 135677788888888888888888888875
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.38 E-value=61 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=10.7
Q ss_pred HHHCCCHHHHHHHHHHHHHhCC
Q 041967 61 LISEGKLEDAIGQLTEAIMLNP 82 (227)
Q Consensus 61 ~~~~~~~~~A~~~~~~al~~~p 82 (227)
++++|.|++|.+.+++.+..+|
T Consensus 124 Ciek~~f~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHMSKDP 145 (235)
T ss_dssp HHHTTCHHHHHHHHHHHSTTCG
T ss_pred HHHhcchHHHHHHHHHHhcCCC
Confidence 3445555555555555444433
No 321
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=29.94 E-value=82 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.054 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
..+..++..|..+...|+.+.|.-+|.+...
T Consensus 38 rta~~llr~A~~y~~egd~e~AYily~R~~~ 68 (146)
T 2xze_A 38 RSGVEIIRMASIYSEEGNIEHAFILYNKYIT 68 (146)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677888888888888888888888877543
No 322
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=35.76 E-value=11 Score=33.72 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 041967 86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWE 136 (227)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 136 (227)
.....+|...+..|+|.-|.+.++.++..+|++..+...++.+|.++|.-.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 455567777788999999999999999999999999999999999999644
No 323
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.54 E-value=1.1e+02 Score=25.30 Aligned_cols=43 Identities=26% Similarity=0.157 Sum_probs=31.9
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 70 AIGQLTEAIML-----NPTSAILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 70 A~~~~~~al~~-----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
++.+|.+||.. .-.....|..+|-++++.+++.+|+..+-.+-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 67777777753 22234567778889999999999999987653
No 324
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=28.99 E-value=1.1e+02 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhcCCCh
Q 041967 137 EAANDLHVASKLDYDE 152 (227)
Q Consensus 137 ~A~~~~~~a~~~~p~~ 152 (227)
.|+..|..+++..|+.
T Consensus 40 ~Aie~l~~alk~e~~~ 55 (93)
T 1wfd_A 40 EGIDMLLQVLKGTKES 55 (93)
T ss_dssp HHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHCCCH
Confidence 3444456666666554
No 325
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.47 E-value=44 Score=25.01 Aligned_cols=38 Identities=5% Similarity=-0.025 Sum_probs=21.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967 57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV 94 (227)
Q Consensus 57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 94 (227)
.-.+++++|.|++|.+.+++....++++......+..+
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34567788888888888888777665554444444333
No 326
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=28.31 E-value=2e+02 Score=21.88 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=7.6
Q ss_pred HcCCHHHHHHHHHHHH
Q 041967 131 RLGQWEEAANDLHVAS 146 (227)
Q Consensus 131 ~~g~~~~A~~~~~~a~ 146 (227)
-+++.+.|...-++|+
T Consensus 180 Iln~p~~Ac~lAk~Af 195 (227)
T 2o8p_A 180 KYGEKKQVFNMLNSLG 195 (227)
T ss_dssp TSSCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 4444555554444443
No 327
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=26.94 E-value=1.3e+02 Score=25.47 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 69 DAIGQLTEAIML-----NPTSAILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 69 ~A~~~~~~al~~-----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
.++.+|.+|+.. .-.....|..+|-++++.+++.+|+..+-.+-
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 366777777753 22234567778889999999999999886653
No 328
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=26.06 E-value=1.4e+02 Score=20.88 Aligned_cols=31 Identities=13% Similarity=-0.092 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM 79 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 79 (227)
..+..++..|..+...|+.+.|.-+|.+-+.
T Consensus 40 rsa~~L~r~A~~y~~EGd~E~AYilymRy~~ 70 (144)
T 2a9u_A 40 HSALKIFKTAEECRLDRDEERAYVLYMKYVT 70 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678888899999999999999998877544
No 329
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.86 E-value=1.2e+02 Score=25.43 Aligned_cols=46 Identities=9% Similarity=-0.110 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967 102 NAAIRDAYVALETNPDS--------AKGYKIRGMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 102 ~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 147 (227)
+..+.+++.|+..=|.. ..++..+|.+|...|++++|.....+++.
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 44666666666554431 34666677777777777777777776654
No 330
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=25.71 E-value=1.2e+02 Score=23.80 Aligned_cols=15 Identities=33% Similarity=0.129 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHHHH
Q 041967 132 LGQWEEAANDLHVAS 146 (227)
Q Consensus 132 ~g~~~~A~~~~~~a~ 146 (227)
+++.+.|....++|+
T Consensus 210 ln~p~~Ac~lAk~AF 224 (268)
T 3efz_A 210 LGNPEGAMKFANRAI 224 (268)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 331
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.34 E-value=1.6e+02 Score=24.76 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 85 AILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
..++..+|.+|+..|++++|+..++.+|..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 457888999999999999999999999854
No 332
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.06 E-value=1.3e+02 Score=18.81 Aligned_cols=11 Identities=27% Similarity=0.030 Sum_probs=5.1
Q ss_pred HHHHHhcCCCh
Q 041967 142 LHVASKLDYDE 152 (227)
Q Consensus 142 ~~~a~~~~p~~ 152 (227)
|..++...|+.
T Consensus 46 ll~alk~e~d~ 56 (86)
T 4a5x_A 46 LLQVLKGTKDN 56 (86)
T ss_dssp HHHHHHTCCCH
T ss_pred HHHHHhhCCCH
Confidence 44444445443
No 333
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.83 E-value=1.3e+02 Score=20.24 Aligned_cols=43 Identities=7% Similarity=-0.027 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967 66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116 (227)
Q Consensus 66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 116 (227)
.|.+|..+..++|.++.. |.-...+.-|.++|..++++|.+..
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 456666666777665531 1111112224455555566666544
No 334
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=24.42 E-value=24 Score=21.42 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=8.8
Q ss_pred hhhhhhhhhhhhhhh
Q 041967 205 GLRDGMASDFFSLCF 219 (227)
Q Consensus 205 ~l~~~~~~~~~~~~~ 219 (227)
.++||.+..+++.+.
T Consensus 52 ~~~dPrv~~~l~~L~ 66 (71)
T 2llv_A 52 LFTDPRLMTIMATLM 66 (71)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred HhhCcHHHHHHHHHH
Confidence 456666666665554
No 335
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=24.42 E-value=1.1e+02 Score=25.76 Aligned_cols=47 Identities=26% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967 67 LEDAIGQLTEAIMLNPT--------SAILYAARAGVYVKLNKPNAAIRDAYVALE 113 (227)
Q Consensus 67 ~~~A~~~~~~al~~~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 113 (227)
|+.-+..++.|+..-|. -..++..+|.+|+..+++++|+..++.++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34445555555553332 245788899999999999999999998874
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.26 E-value=2e+02 Score=20.54 Aligned_cols=59 Identities=2% Similarity=-0.159 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HHHHHH-H--HHHHHHcCCHHHHHHHHHHHHh
Q 041967 89 AARAGVYVKLNKPNAAIRDAYVALETNPDS------AKGYKI-R--GMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 89 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~-l--a~~~~~~g~~~~A~~~~~~a~~ 147 (227)
+..|..++..|+|-+|=..++.+-...+.. ..+++. + |..+...|+...|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446677778888888888888887766544 234444 3 3445667888888888888866
No 337
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=23.47 E-value=2.1e+02 Score=23.91 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967 84 SAILYAARAGVYVKLNKPNAAIRDAYVALET 114 (227)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 114 (227)
-..++..+|.+|+..+++++|+..++.+|..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3568888999999999999999999999864
No 338
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.33 E-value=2.4e+02 Score=23.89 Aligned_cols=46 Identities=26% Similarity=0.167 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967 103 AAIRDAYVALETNPD-----------SAKGYKIRGMARARLGQWEEAANDLHVASKL 148 (227)
Q Consensus 103 ~A~~~~~~al~~~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 148 (227)
..+.+++.|+..=|. ...++-.+|.+|...|++.+|.....+++..
T Consensus 176 ~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 176 QSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555566554332 1236666777777777777777777766643
No 339
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.22 E-value=2.4e+02 Score=21.26 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967 70 AIGQLTEAIM--LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN 115 (227)
Q Consensus 70 A~~~~~~al~--~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 115 (227)
+...|..... +.-..+..|...|..+-..|++.+|..+|+.+|...
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
No 340
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=22.64 E-value=1.2e+02 Score=17.34 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 041967 49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIML 80 (227)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 80 (227)
..++.+...+...+.-.|...|++.+++++.+
T Consensus 18 ~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 18 EQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 45667777777777788888888888888763
No 341
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=22.60 E-value=3.1e+02 Score=22.15 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 041967 51 ANMTKLKAVDLISEGKLEDAIGQLTEA 77 (227)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~~A~~~~~~a 77 (227)
-+.++.+++-|+++++|++|++++-..
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 356778888899999999999875553
No 342
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.59 E-value=1.3e+02 Score=25.15 Aligned_cols=45 Identities=18% Similarity=0.059 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967 103 AAIRDAYVALETNPDS--------AKGYKIRGMARARLGQWEEAANDLHVASK 147 (227)
Q Consensus 103 ~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 147 (227)
..+.+++.|+..=|.. ..++..+|.+|...|++.+|.....+++.
T Consensus 172 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 172 EIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4555555555543321 23555566666666666666666665543
No 343
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.98 E-value=1.8e+02 Score=24.53 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967 69 DAIGQLTEAIML-----NPTSAILYAARAGVYVKLNKPNAAIRDAYVAL 112 (227)
Q Consensus 69 ~A~~~~~~al~~-----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 112 (227)
.++.+|++||.. .-...-.|..+|-++++.++|.+|+..+..+-
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 366777777763 22234556677999999999999999997763
No 344
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.45 E-value=81 Score=23.93 Aligned_cols=38 Identities=11% Similarity=-0.085 Sum_probs=20.4
Q ss_pred HHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967 96 VKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG 133 (227)
Q Consensus 96 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 133 (227)
.+.|.|++|...+++.+.-+|.+.+....|..+-....
T Consensus 125 iek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 125 IKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 45556666666666666555555555444444444433
Done!