Query 041968
Match_columns 87
No_of_seqs 147 out of 832
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 99.4 1.4E-13 4.9E-18 101.3 6.3 62 23-87 6-67 (353)
2 3p9c_A Caffeic acid O-methyltr 99.4 2.9E-13 1E-17 99.9 6.7 70 18-87 13-85 (364)
3 1fp2_A Isoflavone O-methyltran 99.4 5.4E-13 1.8E-17 97.3 6.2 69 19-87 10-78 (352)
4 3dp7_A SAM-dependent methyltra 99.4 7.5E-13 2.6E-17 97.3 6.0 66 19-87 9-74 (363)
5 1zg3_A Isoflavanone 4'-O-methy 99.4 6.1E-13 2.1E-17 97.2 5.1 68 20-87 5-72 (358)
6 3reo_A (ISO)eugenol O-methyltr 99.4 8.2E-13 2.8E-17 97.5 5.8 69 19-87 15-87 (368)
7 3lst_A CALO1 methyltransferase 99.2 1.1E-11 3.7E-16 90.4 5.7 61 22-87 19-79 (348)
8 1fp1_D Isoliquiritigenin 2'-O- 99.2 1.2E-11 4.3E-16 90.8 5.7 69 19-87 16-92 (372)
9 2ip2_A Probable phenazine-spec 99.2 3.6E-11 1.2E-15 86.5 6.7 59 24-87 7-65 (334)
10 1x19_A CRTF-related protein; m 99.2 3.6E-11 1.2E-15 87.7 6.5 64 19-87 24-88 (359)
11 3gwz_A MMCR; methyltransferase 99.2 2.1E-11 7.3E-16 89.7 5.3 61 22-87 35-95 (369)
12 3i53_A O-methyltransferase; CO 99.1 3.3E-11 1.1E-15 86.9 3.7 55 28-87 8-62 (332)
13 3mcz_A O-methyltransferase; ad 99.1 7.2E-11 2.5E-15 85.4 5.5 57 25-87 24-80 (352)
14 1qzz_A RDMB, aclacinomycin-10- 99.1 4E-11 1.4E-15 87.2 3.8 60 23-87 14-73 (374)
15 2r3s_A Uncharacterized protein 99.1 1.1E-10 3.6E-15 83.6 4.7 56 27-87 8-63 (335)
16 1tw3_A COMT, carminomycin 4-O- 98.9 1.8E-09 6.1E-14 78.3 5.5 57 26-87 20-76 (360)
17 2heo_A Z-DNA binding protein 1 96.1 0.0017 5.8E-08 37.3 1.2 38 47-87 12-49 (67)
18 2fu4_A Ferric uptake regulatio 95.3 0.0068 2.3E-07 35.3 1.5 39 46-87 18-62 (83)
19 3mq0_A Transcriptional repress 95.1 0.0067 2.3E-07 43.1 1.4 37 48-87 33-69 (275)
20 3r0a_A Putative transcriptiona 94.8 0.01 3.6E-07 37.3 1.5 39 46-87 27-66 (123)
21 1mkm_A ICLR transcriptional re 94.4 0.019 6.6E-07 39.9 2.3 37 48-87 11-47 (249)
22 1xn7_A Hypothetical protein YH 94.3 0.032 1.1E-06 33.2 2.8 34 50-87 7-40 (78)
23 2jt1_A PEFI protein; solution 94.2 0.017 5.9E-07 34.3 1.4 35 50-87 9-48 (77)
24 2xrn_A HTH-type transcriptiona 94.1 0.017 5.7E-07 40.1 1.4 37 48-87 9-45 (241)
25 3cuo_A Uncharacterized HTH-typ 93.9 0.02 7E-07 33.6 1.3 39 45-87 24-62 (99)
26 2htj_A P fimbrial regulatory p 93.6 0.048 1.6E-06 31.6 2.6 35 49-87 4-38 (81)
27 3r4k_A Transcriptional regulat 93.6 0.0075 2.6E-07 42.4 -1.2 37 48-87 9-45 (260)
28 2k02_A Ferrous iron transport 93.6 0.035 1.2E-06 33.8 2.0 34 50-87 7-40 (87)
29 2y75_A HTH-type transcriptiona 93.3 0.067 2.3E-06 33.4 3.1 27 58-87 24-50 (129)
30 1y0u_A Arsenical resistance op 93.1 0.049 1.7E-06 32.4 2.1 40 42-87 28-67 (96)
31 1ub9_A Hypothetical protein PH 93.1 0.032 1.1E-06 32.7 1.2 42 41-86 12-53 (100)
32 1u2w_A CADC repressor, cadmium 93.0 0.051 1.7E-06 33.9 2.2 42 42-87 39-80 (122)
33 2g7u_A Transcriptional regulat 93.0 0.021 7.1E-07 39.9 0.4 37 48-87 17-53 (257)
34 3pqk_A Biofilm growth-associat 92.8 0.08 2.7E-06 31.6 2.8 36 46-86 24-59 (102)
35 2o0y_A Transcriptional regulat 92.8 0.021 7.1E-07 40.1 0.1 36 49-87 27-62 (260)
36 2lkp_A Transcriptional regulat 92.7 0.22 7.6E-06 30.3 4.8 37 46-87 33-69 (119)
37 2ia2_A Putative transcriptiona 92.7 0.019 6.4E-07 40.4 -0.3 37 48-87 24-60 (265)
38 3f6o_A Probable transcriptiona 92.6 0.045 1.5E-06 33.9 1.5 42 41-87 14-55 (118)
39 1sfx_A Conserved hypothetical 92.6 0.054 1.8E-06 31.8 1.7 38 46-87 21-58 (109)
40 1r1u_A CZRA, repressor protein 92.4 0.074 2.5E-06 32.2 2.3 37 46-87 27-63 (106)
41 3lwf_A LIN1550 protein, putati 92.3 0.077 2.6E-06 35.2 2.5 43 38-87 26-68 (159)
42 2lnb_A Z-DNA-binding protein 1 92.2 0.052 1.8E-06 32.8 1.3 34 49-85 23-56 (80)
43 3boq_A Transcriptional regulat 92.2 0.37 1.3E-05 30.1 5.5 37 47-86 49-85 (160)
44 3jth_A Transcription activator 92.1 0.039 1.3E-06 32.7 0.7 39 44-87 22-60 (98)
45 2oqg_A Possible transcriptiona 92.1 0.072 2.4E-06 32.0 1.9 37 46-87 22-58 (114)
46 3ech_A MEXR, multidrug resista 92.0 0.49 1.7E-05 29.1 5.9 38 45-86 37-74 (142)
47 2kko_A Possible transcriptiona 92.0 0.093 3.2E-06 32.0 2.4 36 47-87 27-62 (108)
48 2o03_A Probable zinc uptake re 91.7 0.092 3.2E-06 33.2 2.2 41 44-87 10-55 (131)
49 1oyi_A Double-stranded RNA-bin 91.3 0.074 2.5E-06 32.2 1.3 36 46-86 18-53 (82)
50 1xmk_A Double-stranded RNA-spe 91.3 0.08 2.7E-06 31.6 1.5 36 47-86 13-49 (79)
51 3t8r_A Staphylococcus aureus C 91.3 0.093 3.2E-06 33.9 1.9 42 39-87 11-52 (143)
52 2d1h_A ST1889, 109AA long hypo 91.3 0.064 2.2E-06 31.5 1.0 27 58-87 34-60 (109)
53 2cfx_A HTH-type transcriptiona 91.2 0.12 4.2E-06 32.7 2.4 37 46-86 6-42 (144)
54 1q1h_A TFE, transcription fact 91.2 0.074 2.5E-06 32.2 1.3 37 47-86 20-56 (110)
55 2pn6_A ST1022, 150AA long hypo 91.2 0.11 3.7E-06 33.0 2.2 37 46-86 4-40 (150)
56 3e6m_A MARR family transcripti 91.2 0.45 1.5E-05 30.0 5.1 36 47-86 55-90 (161)
57 2w25_A Probable transcriptiona 91.0 0.13 4.5E-06 32.7 2.4 37 46-86 8-44 (150)
58 2fe3_A Peroxide operon regulat 90.9 0.15 5.2E-06 32.7 2.7 41 44-87 21-66 (145)
59 2dbb_A Putative HTH-type trans 90.8 0.15 5.3E-06 32.4 2.6 37 46-86 10-46 (151)
60 2p5v_A Transcriptional regulat 90.8 0.14 4.8E-06 33.1 2.4 37 46-86 11-47 (162)
61 2cyy_A Putative HTH-type trans 90.8 0.15 5E-06 32.6 2.4 37 46-86 8-44 (151)
62 1ylf_A RRF2 family protein; st 90.7 0.13 4.4E-06 33.2 2.1 42 38-87 13-54 (149)
63 1qgp_A Protein (double strande 90.6 0.085 2.9E-06 30.9 1.1 37 46-85 15-53 (77)
64 3kp7_A Transcriptional regulat 90.5 1.1 3.9E-05 27.6 6.5 32 50-86 43-74 (151)
65 2zkz_A Transcriptional repress 90.5 0.08 2.8E-06 31.8 1.0 38 46-87 28-65 (99)
66 1r1t_A Transcriptional repress 90.5 0.13 4.3E-06 32.3 1.9 37 46-87 47-83 (122)
67 2cg4_A Regulatory protein ASNC 90.4 0.16 5.6E-06 32.3 2.4 37 46-86 9-45 (152)
68 1ku9_A Hypothetical protein MJ 90.3 0.11 3.7E-06 32.0 1.4 34 50-86 31-64 (152)
69 3i4p_A Transcriptional regulat 90.2 0.15 5.1E-06 33.2 2.2 36 46-85 4-39 (162)
70 1jhg_A Trp operon repressor; c 90.2 0.15 5.1E-06 31.9 2.1 39 44-87 44-82 (101)
71 3fm5_A Transcriptional regulat 90.2 0.12 4.3E-06 32.2 1.7 38 46-86 40-77 (150)
72 1i1g_A Transcriptional regulat 90.2 0.18 6E-06 31.5 2.4 36 47-86 6-41 (141)
73 3bro_A Transcriptional regulat 90.1 0.16 5.5E-06 31.1 2.1 37 47-86 36-73 (141)
74 2nnn_A Probable transcriptiona 89.9 0.15 5.2E-06 31.1 1.9 37 46-86 39-75 (140)
75 2jsc_A Transcriptional regulat 89.9 0.082 2.8E-06 32.7 0.6 37 46-87 22-58 (118)
76 2hr3_A Probable transcriptiona 89.7 0.27 9.1E-06 30.3 3.0 38 46-86 36-73 (147)
77 3bj6_A Transcriptional regulat 89.7 0.9 3.1E-05 28.0 5.5 36 47-86 42-77 (152)
78 3eco_A MEPR; mutlidrug efflux 89.7 0.13 4.6E-06 31.5 1.5 38 46-86 32-70 (139)
79 1qbj_A Protein (double-strande 89.6 0.18 6.2E-06 30.0 2.0 38 45-85 10-49 (81)
80 3b73_A PHIH1 repressor-like pr 89.5 0.14 4.7E-06 32.3 1.5 37 46-86 14-52 (111)
81 2pg4_A Uncharacterized protein 89.4 0.13 4.4E-06 30.4 1.2 33 50-85 20-53 (95)
82 2xig_A Ferric uptake regulatio 89.3 0.26 8.8E-06 31.9 2.8 41 44-87 26-71 (150)
83 2gxg_A 146AA long hypothetical 89.2 0.2 6.7E-06 30.8 2.1 36 46-86 38-73 (146)
84 2ia0_A Putative HTH-type trans 89.2 0.22 7.7E-06 32.8 2.4 37 46-86 18-54 (171)
85 3bja_A Transcriptional regulat 89.2 0.2 6.7E-06 30.5 2.0 36 47-86 35-70 (139)
86 1mzb_A Ferric uptake regulatio 89.1 0.23 8E-06 31.5 2.4 40 45-87 18-63 (136)
87 2fbh_A Transcriptional regulat 89.1 0.21 7.1E-06 30.7 2.1 37 47-86 39-75 (146)
88 2e1c_A Putative HTH-type trans 89.0 0.23 8E-06 32.8 2.4 37 46-86 28-64 (171)
89 3k2z_A LEXA repressor; winged 88.8 0.21 7.3E-06 33.3 2.2 33 52-87 16-48 (196)
90 3f6v_A Possible transcriptiona 88.8 0.12 4.2E-06 33.7 0.9 44 39-87 52-95 (151)
91 3nrv_A Putative transcriptiona 88.6 0.24 8.4E-06 30.6 2.2 37 46-86 41-77 (148)
92 3u2r_A Regulatory protein MARR 88.6 1 3.5E-05 28.5 5.3 38 46-86 47-85 (168)
93 3bpv_A Transcriptional regulat 88.6 0.23 7.8E-06 30.2 2.0 36 47-86 31-66 (138)
94 3bdd_A Regulatory protein MARR 88.2 0.24 8.2E-06 30.2 1.9 37 46-86 32-68 (142)
95 2a61_A Transcriptional regulat 88.1 0.22 7.6E-06 30.5 1.7 36 47-86 35-70 (145)
96 3k0l_A Repressor protein; heli 87.9 0.36 1.2E-05 30.6 2.7 36 47-86 48-83 (162)
97 2x4h_A Hypothetical protein SS 87.8 0.27 9.3E-06 30.4 2.0 27 57-86 28-54 (139)
98 1j5y_A Transcriptional regulat 87.7 0.29 9.8E-06 32.6 2.2 40 44-86 20-59 (187)
99 3cdh_A Transcriptional regulat 87.6 0.25 8.6E-06 30.9 1.8 36 47-86 45-80 (155)
100 3jw4_A Transcriptional regulat 87.4 0.22 7.5E-06 31.0 1.4 36 48-86 44-80 (148)
101 2fa5_A Transcriptional regulat 87.4 0.33 1.1E-05 30.4 2.3 36 47-86 51-86 (162)
102 3k69_A Putative transcription 87.1 0.44 1.5E-05 31.4 2.8 41 39-87 12-52 (162)
103 2rdp_A Putative transcriptiona 87.0 0.28 9.6E-06 30.3 1.8 36 47-86 44-79 (150)
104 1uly_A Hypothetical protein PH 87.0 0.43 1.5E-05 32.2 2.8 38 44-86 19-56 (192)
105 3g3z_A NMB1585, transcriptiona 86.9 0.29 9.9E-06 30.2 1.8 37 46-86 32-68 (145)
106 3deu_A Transcriptional regulat 86.9 0.25 8.5E-06 31.8 1.5 38 46-86 54-91 (166)
107 2o3f_A Putative HTH-type trans 86.5 0.33 1.1E-05 30.1 1.9 38 47-87 23-63 (111)
108 1tbx_A ORF F-93, hypothetical 86.5 0.29 1E-05 28.8 1.6 36 47-86 10-49 (99)
109 3tgn_A ADC operon repressor AD 86.3 0.37 1.3E-05 29.6 2.1 36 46-86 39-74 (146)
110 1jgs_A Multiple antibiotic res 86.2 0.32 1.1E-05 29.6 1.7 36 47-86 36-71 (138)
111 1lj9_A Transcriptional regulat 86.2 0.28 9.5E-06 30.1 1.4 36 47-86 31-66 (144)
112 2qww_A Transcriptional regulat 86.2 0.27 9.4E-06 30.6 1.4 36 47-86 43-78 (154)
113 3mn2_A Probable ARAC family tr 86.2 0.63 2.1E-05 27.7 3.0 24 59-85 17-40 (108)
114 2eth_A Transcriptional regulat 86.0 0.36 1.2E-05 30.2 1.9 37 46-86 45-81 (154)
115 2fbi_A Probable transcriptiona 86.0 0.26 8.8E-06 30.1 1.2 37 46-86 37-73 (142)
116 3oop_A LIN2960 protein; protei 85.7 0.24 8.1E-06 30.6 0.9 37 46-86 38-74 (143)
117 2bv6_A MGRA, HTH-type transcri 85.7 0.34 1.2E-05 29.7 1.6 37 46-86 38-74 (142)
118 1p6r_A Penicillinase repressor 85.7 0.21 7.2E-06 28.6 0.6 37 46-86 10-50 (82)
119 3oio_A Transcriptional regulat 85.6 0.81 2.8E-05 27.5 3.3 31 52-85 14-45 (113)
120 3cjn_A Transcriptional regulat 85.6 0.31 1.1E-05 30.6 1.4 37 46-86 53-89 (162)
121 1on2_A Transcriptional regulat 85.5 0.44 1.5E-05 29.6 2.1 26 58-86 20-45 (142)
122 2fbk_A Transcriptional regulat 85.5 0.25 8.6E-06 32.0 1.0 36 47-85 71-108 (181)
123 2wte_A CSA3; antiviral protein 85.3 0.38 1.3E-05 33.8 1.9 38 46-87 153-190 (244)
124 3mwm_A ZUR, putative metal upt 85.3 0.41 1.4E-05 30.6 1.9 41 44-87 13-58 (139)
125 2nyx_A Probable transcriptiona 85.2 3.1 0.00011 26.3 6.1 37 46-86 46-82 (168)
126 2pex_A Transcriptional regulat 85.0 0.35 1.2E-05 30.1 1.4 36 47-86 49-84 (153)
127 3iwf_A Transcription regulator 84.8 0.4 1.4E-05 29.7 1.6 38 47-87 19-59 (107)
128 3oou_A LIN2118 protein; protei 84.6 0.81 2.8E-05 27.3 2.9 24 59-85 20-43 (108)
129 2p5k_A Arginine repressor; DNA 84.4 0.98 3.3E-05 24.3 3.0 30 52-85 12-46 (64)
130 1xd7_A YWNA; structural genomi 84.4 0.74 2.5E-05 29.4 2.8 40 38-87 8-47 (145)
131 3kor_A Possible Trp repressor; 84.2 1.3 4.3E-05 28.5 3.8 39 43-87 61-99 (119)
132 2w57_A Ferric uptake regulatio 84.1 0.33 1.1E-05 31.4 1.0 40 45-87 17-62 (150)
133 3mkl_A HTH-type transcriptiona 84.1 1.2 4.1E-05 27.1 3.6 32 51-85 13-45 (120)
134 2hzt_A Putative HTH-type trans 84.0 0.57 2E-05 28.2 2.1 31 51-86 20-51 (107)
135 1z7u_A Hypothetical protein EF 83.9 0.63 2.2E-05 28.3 2.2 31 51-86 28-59 (112)
136 3f3x_A Transcriptional regulat 83.9 0.37 1.3E-05 29.7 1.2 36 46-86 38-73 (144)
137 1s3j_A YUSO protein; structura 83.9 3.1 0.00011 25.5 5.6 35 48-86 40-74 (155)
138 2g9w_A Conserved hypothetical 83.6 0.42 1.4E-05 30.0 1.4 38 46-86 10-51 (138)
139 4hbl_A Transcriptional regulat 83.5 0.43 1.5E-05 29.7 1.4 36 47-86 43-78 (149)
140 1jko_C HIN recombinase, DNA-in 82.9 1.1 3.6E-05 22.6 2.6 22 61-85 22-43 (52)
141 2k9s_A Arabinose operon regula 82.8 1.5 5E-05 26.1 3.6 24 59-85 19-42 (107)
142 1z91_A Organic hydroperoxide r 82.7 0.32 1.1E-05 29.9 0.5 37 46-86 41-77 (147)
143 1tc3_C Protein (TC3 transposas 82.7 1.1 3.6E-05 22.1 2.5 23 60-85 21-43 (51)
144 3s2w_A Transcriptional regulat 82.2 0.42 1.4E-05 30.1 0.9 33 50-86 55-87 (159)
145 3nqo_A MARR-family transcripti 81.9 0.66 2.3E-05 30.4 1.9 39 45-86 41-80 (189)
146 2qvo_A Uncharacterized protein 81.8 0.25 8.4E-06 29.2 -0.3 25 59-86 29-53 (95)
147 2hoe_A N-acetylglucosamine kin 81.7 0.54 1.9E-05 34.2 1.5 45 37-86 12-56 (380)
148 2p4w_A Transcriptional regulat 81.6 0.74 2.5E-05 31.3 2.1 38 45-87 15-52 (202)
149 3hsr_A HTH-type transcriptiona 81.5 0.3 1E-05 30.1 0.1 34 49-86 40-73 (140)
150 1bl0_A Protein (multiple antib 81.3 1.1 3.8E-05 27.6 2.7 32 51-85 17-49 (129)
151 4aik_A Transcriptional regulat 81.2 0.95 3.2E-05 28.7 2.4 33 50-85 36-68 (151)
152 3lsg_A Two-component response 81.1 1.2 4.1E-05 26.2 2.7 24 59-85 18-41 (103)
153 2dk5_A DNA-directed RNA polyme 80.8 0.6 2E-05 28.2 1.3 36 49-87 24-60 (91)
154 3df8_A Possible HXLR family tr 79.8 0.97 3.3E-05 27.6 2.0 27 58-87 38-67 (111)
155 2qm3_A Predicted methyltransfe 79.0 0.62 2.1E-05 33.8 1.1 33 49-87 47-79 (373)
156 1z6r_A MLC protein; transcript 78.3 1.7 5.7E-05 31.7 3.2 41 42-86 13-53 (406)
157 4g6q_A Putative uncharacterize 78.0 0.65 2.2E-05 30.9 0.8 36 46-86 24-60 (182)
158 1okr_A MECI, methicillin resis 77.7 0.5 1.7E-05 28.5 0.2 36 47-86 12-51 (123)
159 2frh_A SARA, staphylococcal ac 77.3 0.61 2.1E-05 28.7 0.5 37 47-86 39-76 (127)
160 2h09_A Transcriptional regulat 77.0 1.8 6.1E-05 27.2 2.7 32 51-86 46-77 (155)
161 4fx0_A Probable transcriptiona 77.0 0.96 3.3E-05 28.6 1.4 25 59-86 51-75 (148)
162 1u8b_A ADA polyprotein; protei 76.8 1.6 5.4E-05 27.0 2.4 25 58-85 91-115 (133)
163 1v4r_A Transcriptional repress 76.8 2.3 7.8E-05 25.2 3.0 27 58-87 32-59 (102)
164 3frw_A Putative Trp repressor 76.8 1.8 6.2E-05 27.3 2.6 38 44-87 45-82 (107)
165 1uxc_A FRUR (1-57), fructose r 76.6 1.7 5.7E-05 24.5 2.2 22 61-85 1-22 (65)
166 3eyy_A Putative iron uptake re 76.4 1.4 4.7E-05 28.2 2.1 42 45-87 19-62 (145)
167 2l0k_A Stage III sporulation p 76.1 2.1 7.3E-05 25.9 2.7 31 50-85 12-42 (93)
168 2x48_A CAG38821; archeal virus 75.7 2.2 7.5E-05 22.2 2.4 23 60-85 31-53 (55)
169 2fxa_A Protease production reg 75.0 1 3.4E-05 30.2 1.1 36 47-86 50-85 (207)
170 2f2e_A PA1607; transcription f 74.9 1.7 5.8E-05 27.7 2.2 25 59-86 36-60 (146)
171 3f2g_A Alkylmercury lyase; MER 74.7 2.5 8.5E-05 29.6 3.1 34 49-86 26-59 (220)
172 1z05_A Transcriptional regulat 74.2 2 6.7E-05 31.7 2.6 42 41-86 35-76 (429)
173 2xvc_A ESCRT-III, SSO0910; cel 74.2 1.4 4.9E-05 25.0 1.5 35 49-86 14-48 (59)
174 1sd4_A Penicillinase repressor 73.7 0.94 3.2E-05 27.4 0.7 36 46-85 11-50 (126)
175 2fsw_A PG_0823 protein; alpha- 73.5 1.3 4.4E-05 26.6 1.3 26 58-86 36-62 (107)
176 3qkx_A Uncharacterized HTH-typ 73.4 3.3 0.00011 25.4 3.2 26 54-82 21-47 (188)
177 2k4b_A Transcriptional regulat 73.3 0.73 2.5E-05 28.1 0.1 39 47-86 37-76 (99)
178 4b8x_A SCO5413, possible MARR- 73.0 0.89 3E-05 28.6 0.5 26 58-86 49-74 (147)
179 1sgm_A Putative HTH-type trans 72.6 3.5 0.00012 25.3 3.2 26 54-82 19-45 (191)
180 3ppb_A Putative TETR family tr 71.8 3.8 0.00013 25.2 3.2 27 53-82 21-48 (195)
181 2pij_A Prophage PFL 6 CRO; tra 71.1 4.5 0.00015 21.6 3.1 31 49-85 5-35 (67)
182 1sfu_A 34L protein; protein/Z- 70.8 1.6 5.4E-05 25.9 1.2 24 58-84 27-50 (75)
183 1yyv_A Putative transcriptiona 70.3 1.4 4.9E-05 27.7 1.0 47 27-87 26-73 (131)
184 2zcm_A Biofilm operon icaabcd 69.9 3.8 0.00013 25.6 3.0 35 40-82 11-46 (192)
185 4ets_A Ferric uptake regulatio 69.8 3 0.0001 27.2 2.5 44 44-87 32-79 (162)
186 3dv8_A Transcriptional regulat 69.2 2.1 7.1E-05 27.6 1.6 24 60-86 169-192 (220)
187 4a5n_A Uncharacterized HTH-typ 69.0 2.6 8.9E-05 26.8 2.0 47 27-87 17-64 (131)
188 1p4x_A Staphylococcal accessor 68.9 2 6.7E-05 30.0 1.5 37 46-85 159-196 (250)
189 2oz6_A Virulence factor regula 68.9 1.8 6E-05 27.7 1.2 24 60-86 164-187 (207)
190 2qlz_A Transcription factor PF 68.6 0.55 1.9E-05 32.9 -1.4 41 42-87 9-49 (232)
191 1bia_A BIRA bifunctional prote 68.0 2.3 8E-05 30.5 1.8 36 47-86 7-42 (321)
192 3bqz_B HTH-type transcriptiona 68.0 4.4 0.00015 25.0 2.9 26 54-82 15-41 (194)
193 1bja_A Transcription regulator 67.9 3 0.0001 25.6 2.0 35 48-86 19-54 (95)
194 3e97_A Transcriptional regulat 67.9 2.3 7.9E-05 27.7 1.6 25 59-86 174-198 (231)
195 3f1b_A TETR-like transcription 67.5 4.4 0.00015 25.1 2.9 26 54-82 27-53 (203)
196 2fmy_A COOA, carbon monoxide o 67.5 2.4 8.1E-05 27.5 1.6 25 59-86 166-190 (220)
197 2yve_A Transcriptional regulat 67.5 5.2 0.00018 25.1 3.3 27 53-82 16-43 (185)
198 1ku3_A Sigma factor SIGA; heli 67.5 4.6 0.00016 22.3 2.7 22 59-83 29-50 (73)
199 2dg8_A Putative TETR-family tr 67.5 4.2 0.00014 25.5 2.8 26 54-82 22-48 (193)
200 2eh3_A Transcriptional regulat 67.0 4.3 0.00015 25.1 2.8 26 54-82 15-41 (179)
201 3ryp_A Catabolite gene activat 67.0 2.1 7.1E-05 27.4 1.3 24 60-86 167-190 (210)
202 1y10_A Hypothetical protein RV 67.0 3.1 0.00011 31.3 2.4 37 48-87 53-90 (407)
203 2fq4_A Transcriptional regulat 67.0 4.3 0.00015 25.5 2.8 26 54-82 25-51 (192)
204 2gau_A Transcriptional regulat 66.8 2.7 9.1E-05 27.4 1.8 25 59-86 179-203 (232)
205 3gzi_A Transcriptional regulat 66.7 6.4 0.00022 24.8 3.6 27 54-83 30-57 (218)
206 3kz9_A SMCR; transcriptional r 66.7 5.2 0.00018 24.8 3.1 26 54-82 30-56 (206)
207 3lwj_A Putative TETR-family tr 66.6 4.3 0.00015 25.3 2.7 26 54-82 25-51 (202)
208 3dpj_A Transcription regulator 66.6 4.4 0.00015 25.1 2.8 26 54-82 21-47 (194)
209 2yu3_A DNA-directed RNA polyme 66.4 2 6.8E-05 26.3 1.0 38 47-87 39-77 (95)
210 2xdn_A HTH-type transcriptiona 66.3 5.8 0.0002 25.1 3.3 26 54-82 24-50 (210)
211 3d0s_A Transcriptional regulat 66.2 2.5 8.7E-05 27.4 1.6 25 59-86 176-200 (227)
212 2dg7_A Putative transcriptiona 66.1 5 0.00017 25.1 2.9 26 54-82 20-46 (195)
213 3hrs_A Metalloregulator SCAR; 66.1 2.8 9.7E-05 28.3 1.8 27 57-86 17-43 (214)
214 2qko_A Possible transcriptiona 66.0 6.7 0.00023 24.9 3.6 36 39-82 31-67 (215)
215 2hyt_A TETR-family transcripti 66.0 5.7 0.00019 25.0 3.2 35 40-82 16-51 (197)
216 3fx3_A Cyclic nucleotide-bindi 65.9 2.3 7.9E-05 27.8 1.3 25 59-86 177-201 (237)
217 3dcf_A Transcriptional regulat 65.8 5.8 0.0002 24.9 3.2 36 39-82 34-70 (218)
218 3iwz_A CAP-like, catabolite ac 65.4 2.3 7.9E-05 27.5 1.3 24 60-86 187-210 (230)
219 1ft9_A Carbon monoxide oxidati 65.0 2.8 9.5E-05 27.3 1.6 24 60-86 163-186 (222)
220 1pb6_A Hypothetical transcript 65.0 5.3 0.00018 25.0 2.9 26 54-82 31-57 (212)
221 2zcw_A TTHA1359, transcription 65.0 2.4 8.2E-05 27.2 1.3 24 60-86 146-169 (202)
222 3vpr_A Transcriptional regulat 64.8 5 0.00017 25.0 2.8 35 40-82 7-42 (190)
223 3bru_A Regulatory protein, TET 64.8 6.2 0.00021 24.9 3.2 26 54-82 43-69 (222)
224 3b02_A Transcriptional regulat 64.8 2.4 8.3E-05 27.1 1.2 24 60-86 139-162 (195)
225 3egq_A TETR family transcripti 64.8 4.3 0.00015 24.8 2.4 27 53-82 16-43 (170)
226 2xi8_A Putative transcription 64.6 4.6 0.00016 21.0 2.2 24 59-85 13-36 (66)
227 3vp5_A Transcriptional regulat 64.3 6.5 0.00022 24.8 3.2 26 54-82 25-51 (189)
228 2obp_A Putative DNA-binding pr 64.2 3.3 0.00011 25.3 1.7 26 58-86 34-59 (96)
229 3knw_A Putative transcriptiona 63.9 5.3 0.00018 25.0 2.8 26 54-82 27-53 (212)
230 3on4_A Transcriptional regulat 63.8 4.3 0.00015 24.9 2.3 26 54-82 23-49 (191)
231 3lhq_A Acrab operon repressor 63.7 5.4 0.00018 24.9 2.8 26 54-82 27-53 (220)
232 4ev0_A Transcription regulator 63.7 2.6 8.8E-05 27.0 1.2 25 59-86 162-186 (216)
233 3dkw_A DNR protein; CRP-FNR, H 63.6 2.7 9.1E-05 27.2 1.3 25 59-86 177-201 (227)
234 2rae_A Transcriptional regulat 63.6 5.9 0.0002 24.8 2.9 26 54-82 30-56 (207)
235 2l8n_A Transcriptional repress 63.4 3.9 0.00013 23.0 1.8 23 60-85 9-31 (67)
236 2g7s_A Transcriptional regulat 63.4 4.5 0.00015 24.8 2.3 26 54-82 21-47 (194)
237 2jpc_A SSRB; DNA binding prote 63.2 5.3 0.00018 20.9 2.3 23 49-74 5-27 (61)
238 3jsj_A Putative TETR-family tr 63.2 5.3 0.00018 24.7 2.6 25 54-82 22-47 (190)
239 3he0_A Transcriptional regulat 63.1 4.3 0.00015 25.1 2.2 26 54-82 24-50 (196)
240 2p7v_B Sigma-70, RNA polymeras 63.0 5.7 0.0002 21.5 2.5 22 59-83 24-45 (68)
241 1gdt_A GD resolvase, protein ( 62.9 6.7 0.00023 25.4 3.2 23 60-85 158-180 (183)
242 3qbm_A TETR transcriptional re 62.8 4.5 0.00015 25.0 2.2 26 54-82 20-46 (199)
243 3gbg_A TCP pilus virulence reg 62.7 7.3 0.00025 26.3 3.4 31 52-85 176-207 (276)
244 3b81_A Transcriptional regulat 62.7 4.5 0.00016 25.1 2.2 26 54-82 24-50 (203)
245 2q24_A Putative TETR family tr 62.6 6 0.00021 24.7 2.8 25 54-82 28-53 (194)
246 2wui_A MEXZ, transcriptional r 62.6 7 0.00024 24.9 3.2 35 40-82 15-50 (210)
247 3omt_A Uncharacterized protein 62.5 5.8 0.0002 21.5 2.4 24 59-85 20-43 (73)
248 3u1d_A Uncharacterized protein 62.5 5.4 0.00018 26.3 2.6 39 46-87 30-70 (151)
249 2w48_A Sorbitol operon regulat 62.4 3.7 0.00013 29.1 1.9 26 58-86 19-44 (315)
250 3bjb_A Probable transcriptiona 62.3 5.5 0.00019 25.5 2.6 26 54-82 35-61 (207)
251 3dew_A Transcriptional regulat 62.3 4.5 0.00015 25.0 2.2 26 54-82 21-47 (206)
252 3e6c_C CPRK, cyclic nucleotide 62.2 3.4 0.00012 27.4 1.6 25 59-86 176-200 (250)
253 1zyb_A Transcription regulator 62.1 2.8 9.7E-05 27.6 1.2 24 60-86 186-209 (232)
254 3dn7_A Cyclic nucleotide bindi 62.0 1.6 5.6E-05 27.7 0.0 26 59-87 167-192 (194)
255 1neq_A DNA-binding protein NER 61.9 6.3 0.00022 22.4 2.6 23 59-84 21-43 (74)
256 2guh_A Putative TETR-family tr 61.7 5.8 0.0002 25.7 2.7 37 39-83 42-79 (214)
257 3ccy_A Putative TETR-family tr 61.6 5.4 0.00018 25.1 2.5 21 54-74 27-48 (203)
258 3la7_A Global nitrogen regulat 61.5 3.6 0.00012 27.3 1.6 25 59-86 192-216 (243)
259 2fd5_A Transcriptional regulat 61.3 4.9 0.00017 24.8 2.2 21 54-74 20-41 (180)
260 3kkc_A TETR family transcripti 61.3 3.7 0.00013 25.1 1.6 31 39-74 15-46 (177)
261 2o7t_A Transcriptional regulat 61.2 6.3 0.00022 24.7 2.7 27 53-82 20-47 (199)
262 1tty_A Sigma-A, RNA polymerase 61.1 6.8 0.00023 22.5 2.7 22 59-83 37-58 (87)
263 3f0c_A TETR-molecule A, transc 61.0 6.4 0.00022 24.8 2.8 26 54-82 24-50 (216)
264 2r1j_L Repressor protein C2; p 61.0 5.8 0.0002 20.7 2.2 24 59-85 17-40 (68)
265 2ibd_A Possible transcriptiona 60.9 6.9 0.00024 24.7 2.9 36 39-82 17-53 (204)
266 1fse_A GERE; helix-turn-helix 60.8 6.8 0.00023 21.1 2.5 16 59-74 25-40 (74)
267 2g7g_A RHA04620, putative tran 60.6 5 0.00017 26.3 2.2 25 54-82 24-48 (213)
268 2nx4_A Transcriptional regulat 60.6 6.6 0.00023 24.7 2.8 35 40-82 14-49 (194)
269 2d6y_A Putative TETR family re 60.6 6.5 0.00022 25.0 2.8 27 54-83 21-48 (202)
270 2r0q_C Putative transposon TN5 60.2 7.7 0.00026 25.7 3.2 23 60-85 175-197 (209)
271 2i10_A Putative TETR transcrip 60.2 6.6 0.00023 24.9 2.7 35 40-82 15-50 (202)
272 3anp_C Transcriptional repress 60.2 6.6 0.00023 24.7 2.7 26 54-82 22-48 (204)
273 2gen_A Probable transcriptiona 59.9 7 0.00024 24.7 2.8 26 54-82 20-46 (197)
274 1zug_A Phage 434 CRO protein; 59.8 6.2 0.00021 20.9 2.2 24 59-85 15-38 (71)
275 4a0z_A Transcription factor FA 59.5 6.2 0.00021 26.5 2.6 34 48-85 15-48 (190)
276 3b7h_A Prophage LP1 protein 11 59.4 6 0.00021 21.4 2.1 24 59-85 19-42 (78)
277 3col_A Putative transcription 59.4 4.4 0.00015 24.9 1.7 26 54-82 23-49 (196)
278 2f07_A YVDT; helix-turn-helix, 59.3 7 0.00024 24.7 2.7 26 54-82 23-49 (197)
279 2qtq_A Transcriptional regulat 59.0 7.2 0.00025 24.3 2.7 22 59-83 35-56 (213)
280 2iu5_A DHAS, YCEG, HTH-type dh 58.8 5 0.00017 25.2 1.9 21 54-74 26-47 (195)
281 1adr_A P22 C2 repressor; trans 58.7 6.5 0.00022 21.1 2.2 24 59-85 17-40 (76)
282 3cwr_A Transcriptional regulat 58.6 6 0.0002 24.5 2.3 26 54-82 30-56 (208)
283 3cdl_A Transcriptional regulat 58.6 6.2 0.00021 25.0 2.4 35 40-82 13-48 (203)
284 2vn2_A DNAD, chromosome replic 58.5 6.6 0.00023 24.4 2.4 26 59-87 50-75 (128)
285 3g7r_A Putative transcriptiona 58.4 7.5 0.00026 25.0 2.8 37 38-82 37-74 (221)
286 2qib_A TETR-family transcripti 58.3 7.2 0.00024 25.3 2.7 26 54-82 26-52 (231)
287 3crj_A Transcription regulator 58.3 5.7 0.0002 25.2 2.2 34 40-81 18-52 (199)
288 3mvp_A TETR/ACRR transcription 58.2 5.9 0.0002 24.8 2.2 21 59-82 45-65 (217)
289 1vi0_A Transcriptional regulat 58.2 5.9 0.0002 25.3 2.2 26 54-82 21-47 (206)
290 1r69_A Repressor protein CI; g 58.0 6.9 0.00024 20.5 2.2 24 59-85 13-36 (69)
291 3s5r_A Transcriptional regulat 58.0 7.9 0.00027 24.2 2.8 26 54-82 23-49 (216)
292 2b5a_A C.BCLI; helix-turn-heli 58.0 7 0.00024 21.0 2.3 24 59-85 22-45 (77)
293 3nrg_A TETR family transcripti 57.9 5.3 0.00018 25.1 2.0 21 54-74 26-47 (217)
294 3rd3_A Probable transcriptiona 57.9 4.8 0.00017 24.8 1.7 25 54-81 23-48 (197)
295 2gmg_A Hypothetical protein PF 57.9 4.5 0.00015 25.4 1.5 26 46-73 12-37 (105)
296 1t33_A Putative transcriptiona 57.9 5.3 0.00018 25.4 2.0 25 54-82 25-50 (224)
297 2k9l_A RNA polymerase sigma fa 57.8 5.6 0.00019 22.8 1.9 34 50-86 37-71 (76)
298 3bhq_A Transcriptional regulat 57.7 7.8 0.00027 24.6 2.8 26 54-82 25-51 (211)
299 1y7y_A C.AHDI; helix-turn-heli 57.6 8.3 0.00028 20.5 2.5 24 59-85 25-48 (74)
300 1d5y_A ROB transcription facto 57.6 6.1 0.00021 26.9 2.3 32 51-85 9-41 (292)
301 3cta_A Riboflavin kinase; stru 57.5 4.3 0.00015 27.4 1.5 25 59-86 26-50 (230)
302 3bs3_A Putative DNA-binding pr 57.3 8.3 0.00029 20.7 2.5 24 59-85 22-45 (76)
303 3bni_A Putative TETR-family tr 57.2 7.9 0.00027 25.1 2.8 26 54-82 56-82 (229)
304 1zk8_A Transcriptional regulat 57.2 3.9 0.00013 25.2 1.2 21 54-74 21-42 (183)
305 3cjd_A Transcriptional regulat 57.1 6.3 0.00021 25.0 2.2 26 54-82 25-51 (198)
306 3him_A Probable transcriptiona 57.0 4.4 0.00015 25.2 1.4 21 54-74 29-50 (211)
307 3c2b_A Transcriptional regulat 56.9 6.5 0.00022 24.9 2.3 27 54-83 28-55 (221)
308 3ljl_A Transcriptional regulat 56.9 4 0.00014 25.1 1.2 21 59-82 33-53 (156)
309 3vib_A MTRR; helix-turn-helix 56.8 8.1 0.00028 24.4 2.7 26 54-82 23-49 (210)
310 2np5_A Transcriptional regulat 56.8 6.6 0.00023 24.9 2.3 26 54-82 22-48 (203)
311 3kcc_A Catabolite gene activat 56.7 4 0.00014 27.5 1.3 24 60-86 217-240 (260)
312 3rh2_A Hypothetical TETR-like 56.6 6.7 0.00023 24.8 2.3 26 54-82 16-42 (212)
313 3ni7_A Bacterial regulatory pr 56.4 11 0.00038 24.5 3.4 26 54-82 20-46 (213)
314 4hku_A LMO2814 protein, TETR t 56.2 4.9 0.00017 25.1 1.5 21 54-74 20-41 (178)
315 1rkt_A Protein YFIR; transcrip 56.1 6.6 0.00023 24.8 2.2 35 40-82 16-51 (205)
316 2oi8_A Putative regulatory pro 55.9 7.4 0.00025 25.3 2.5 26 54-82 29-55 (216)
317 3q0w_A HTH-type transcriptiona 55.9 8.5 0.00029 25.0 2.7 35 40-82 48-83 (236)
318 2zb9_A Putative transcriptiona 55.9 7 0.00024 24.7 2.3 26 54-82 36-62 (214)
319 1o5l_A Transcriptional regulat 55.2 2.5 8.5E-05 27.4 0.0 25 60-87 164-188 (213)
320 2w53_A Repressor, SMet; antibi 55.2 7 0.00024 24.9 2.2 26 54-82 24-50 (219)
321 2o8x_A Probable RNA polymerase 54.8 9.4 0.00032 20.3 2.4 22 59-83 30-51 (70)
322 2k9q_A Uncharacterized protein 54.7 8.2 0.00028 21.1 2.2 23 59-84 14-36 (77)
323 2fbq_A Probable transcriptiona 54.2 8.8 0.0003 25.0 2.6 35 40-82 11-46 (235)
324 2elh_A CG11849-PA, LD40883P; s 54.1 8.5 0.00029 22.1 2.3 22 61-85 39-60 (87)
325 3qq6_A HTH-type transcriptiona 54.1 8.7 0.0003 21.4 2.3 24 59-85 22-45 (78)
326 2o0m_A Transcriptional regulat 53.9 2.7 9.3E-05 30.3 0.0 36 48-87 23-58 (345)
327 3v6g_A Probable transcriptiona 53.9 9.5 0.00032 24.6 2.7 26 54-82 27-53 (208)
328 1ui5_A A-factor receptor homol 53.8 9.8 0.00034 24.4 2.8 26 54-82 22-48 (215)
329 4esf_A PADR-like transcription 53.7 15 0.0005 22.5 3.4 41 42-87 8-54 (117)
330 3bqy_A Putative TETR family tr 53.4 7.7 0.00026 25.4 2.2 26 54-82 15-41 (209)
331 2wiu_B HTH-type transcriptiona 53.4 9 0.00031 21.2 2.3 24 59-85 24-47 (88)
332 2a6c_A Helix-turn-helix motif; 53.1 8.9 0.0003 21.5 2.2 24 59-85 30-53 (83)
333 3f6w_A XRE-family like protein 53.0 9 0.00031 21.1 2.2 24 59-85 26-49 (83)
334 3hta_A EBRA repressor; TETR fa 53.0 8.1 0.00028 24.9 2.2 21 59-82 47-67 (217)
335 3o60_A LIN0861 protein; PSI, M 52.9 11 0.00039 24.0 2.9 26 54-82 33-59 (185)
336 3c07_A Putative TETR-family tr 52.8 12 0.00041 25.4 3.2 36 39-82 44-80 (273)
337 1z4h_A TORI, TOR inhibition pr 52.7 7.6 0.00026 21.3 1.8 24 59-85 9-32 (66)
338 2ras_A Transcriptional regulat 52.6 5.9 0.0002 25.0 1.5 21 54-74 24-45 (212)
339 3nnr_A Transcriptional regulat 52.5 8.4 0.00029 24.7 2.3 26 54-82 18-44 (228)
340 2ev1_A Hypothetical protein RV 52.3 5.9 0.0002 27.7 1.5 33 51-86 68-101 (222)
341 3on2_A Probable transcriptiona 52.2 3.2 0.00011 25.6 0.2 21 54-74 25-46 (199)
342 1r7j_A Conserved hypothetical 52.0 9.1 0.00031 22.7 2.2 24 61-87 21-44 (95)
343 3s8q_A R-M controller protein; 51.6 10 0.00034 20.9 2.3 24 59-85 23-46 (82)
344 3kz3_A Repressor protein CI; f 51.4 11 0.00038 20.8 2.4 24 59-85 24-47 (80)
345 2bgc_A PRFA; bacterial infecti 51.4 9.4 0.00032 25.0 2.4 24 60-86 169-193 (238)
346 2hyj_A Putative TETR-family tr 51.4 7.1 0.00024 24.7 1.7 31 39-74 15-46 (200)
347 2ef8_A C.ECOT38IS, putative tr 51.2 10 0.00036 20.7 2.3 23 59-84 22-44 (84)
348 2gfn_A HTH-type transcriptiona 51.0 8.9 0.0003 24.5 2.2 26 54-82 22-48 (209)
349 2qwt_A Transcriptional regulat 51.0 16 0.00054 22.9 3.4 26 54-82 26-51 (196)
350 1r71_A Transcriptional repress 50.9 9.1 0.00031 25.6 2.2 24 61-87 53-76 (178)
351 2id3_A Putative transcriptiona 50.8 9.2 0.00032 24.7 2.3 26 54-82 53-79 (225)
352 2jj7_A Hemolysin II regulatory 50.8 4.5 0.00015 25.0 0.7 22 59-83 26-47 (186)
353 3fiw_A Putative TETR-family tr 50.8 9.3 0.00032 25.0 2.3 36 39-82 28-64 (211)
354 3t72_q RNA polymerase sigma fa 50.8 13 0.00043 22.4 2.7 22 59-83 38-59 (99)
355 2oer_A Probable transcriptiona 50.6 7.7 0.00026 24.8 1.8 36 39-82 27-63 (214)
356 2of7_A Putative TETR-family tr 50.5 11 0.00038 24.9 2.7 26 54-82 61-87 (260)
357 3pas_A TETR family transcripti 50.5 4.6 0.00016 24.8 0.7 21 59-82 27-47 (195)
358 2ao9_A Phage protein; structur 50.5 9.4 0.00032 25.2 2.2 24 59-85 47-70 (155)
359 2zcx_A SCO7815, TETR-family tr 50.4 11 0.00039 24.6 2.7 26 54-82 36-62 (231)
360 2hxi_A Putative transcriptiona 50.3 12 0.0004 25.1 2.8 37 39-83 32-69 (241)
361 1stz_A Heat-inducible transcri 50.3 11 0.00037 27.5 2.7 31 53-87 30-62 (338)
362 3mnl_A KSTR, transcriptional r 50.2 4.8 0.00016 25.0 0.7 21 59-82 39-59 (203)
363 2vxz_A Pyrsv_GP04; viral prote 50.2 6.7 0.00023 26.4 1.5 24 49-74 15-38 (165)
364 2hxo_A Putative TETR-family tr 50.0 9.9 0.00034 25.4 2.4 26 54-82 29-55 (237)
365 2kpj_A SOS-response transcript 50.0 11 0.00037 21.5 2.3 24 59-85 21-44 (94)
366 3aqt_A Bacterial regulatory pr 49.9 7.2 0.00025 25.6 1.6 21 54-74 59-80 (245)
367 2ict_A Antitoxin HIGA; helix-t 49.8 11 0.00037 21.4 2.3 24 59-85 20-43 (94)
368 1z0x_A Transcriptional regulat 49.6 9.4 0.00032 25.0 2.2 26 54-82 18-45 (220)
369 4aci_A HTH-type transcriptiona 49.6 5 0.00017 24.8 0.7 22 59-83 33-54 (191)
370 2hku_A A putative transcriptio 49.3 13 0.00045 23.5 2.8 21 59-82 38-58 (215)
371 2v57_A TETR family transcripti 49.0 14 0.00047 22.7 2.8 34 40-82 18-51 (190)
372 3t76_A VANU, transcriptional r 49.0 11 0.00039 22.0 2.3 24 59-85 36-59 (88)
373 3qqa_A CMER; alpha-helical, he 49.0 5.9 0.0002 24.8 1.0 21 54-74 32-53 (216)
374 1j9i_A GPNU1 DBD;, terminase s 48.9 7 0.00024 21.5 1.2 22 61-85 3-24 (68)
375 1je8_A Nitrate/nitrite respons 48.9 13 0.00046 21.0 2.5 16 59-74 35-50 (82)
376 2gqq_A Leucine-responsive regu 48.8 1.3 4.6E-05 28.4 -2.1 27 47-74 15-41 (163)
377 2ewt_A BLDD, putative DNA-bind 48.8 13 0.00045 19.6 2.4 23 59-84 20-44 (71)
378 3g1o_A Transcriptional regulat 48.7 11 0.00039 24.7 2.5 35 40-82 47-82 (255)
379 2jn6_A Protein CGL2762, transp 48.6 10 0.00034 21.9 2.0 23 60-85 23-45 (97)
380 2iai_A Putative transcriptiona 48.5 8 0.00027 25.0 1.7 21 54-74 43-64 (230)
381 3kjx_A Transcriptional regulat 48.5 14 0.00048 25.5 3.0 24 59-85 9-32 (344)
382 3geu_A Intercellular adhesion 47.8 3.7 0.00013 25.5 -0.1 20 59-81 22-41 (189)
383 3ulq_B Transcriptional regulat 47.7 16 0.00055 21.3 2.8 25 47-74 34-58 (90)
384 1hsj_A Fusion protein consisti 47.6 5.6 0.00019 29.2 0.9 36 48-86 407-443 (487)
385 3e7q_A Transcriptional regulat 47.5 5.6 0.00019 24.8 0.7 21 59-82 33-53 (215)
386 1p4x_A Staphylococcal accessor 47.4 6 0.00021 27.5 1.0 35 48-85 37-72 (250)
387 3frq_A Repressor protein MPHR( 47.4 5.6 0.00019 24.8 0.7 21 59-82 27-47 (195)
388 2id6_A Transcriptional regulat 47.4 7.4 0.00025 24.6 1.3 21 59-82 24-44 (202)
389 3kkd_A Transcriptional regulat 47.3 8.1 0.00028 25.0 1.5 31 39-74 38-69 (237)
390 1lmb_3 Protein (lambda repress 47.2 12 0.00042 20.9 2.2 24 59-85 29-52 (92)
391 3hug_A RNA polymerase sigma fa 47.1 14 0.00047 21.2 2.4 16 59-74 52-67 (92)
392 2lfc_A Fumarate reductase, fla 46.8 9.2 0.00031 24.6 1.7 20 60-82 95-114 (160)
393 3loc_A HTH-type transcriptiona 46.6 5.5 0.00019 24.9 0.6 21 59-82 37-57 (212)
394 4fe7_A Xylose operon regulator 45.5 13 0.00046 26.6 2.6 24 59-85 320-343 (412)
395 2opt_A Actii protein; helical 45.5 12 0.00042 25.1 2.3 22 59-83 25-46 (234)
396 3nxc_A HTH-type protein SLMA; 45.4 11 0.00036 23.5 1.8 21 59-82 44-64 (212)
397 3f8b_A Transcriptional regulat 45.3 25 0.00084 21.3 3.5 42 41-87 8-57 (116)
398 3rkx_A Biotin-[acetyl-COA-carb 45.3 11 0.00038 27.1 2.1 34 49-85 7-41 (323)
399 1ntc_A Protein (nitrogen regul 45.2 24 0.00081 20.5 3.3 31 50-85 56-86 (91)
400 1y6u_A XIS, excisionase from t 44.7 10 0.00035 21.6 1.5 24 59-85 15-38 (70)
401 2g7l_A TETR-family transcripti 44.6 11 0.00037 25.4 1.9 21 59-82 38-58 (243)
402 3trb_A Virulence-associated pr 44.2 14 0.00048 22.1 2.2 24 59-85 26-49 (104)
403 2y2z_A SIM16, SIMR, putative r 44.1 13 0.00044 25.5 2.2 21 59-82 46-66 (267)
404 2kfs_A Conserved hypothetical 44.1 9.1 0.00031 25.3 1.4 25 58-85 29-53 (148)
405 1t6s_A Conserved hypothetical 44.0 16 0.00055 24.1 2.6 25 58-85 20-46 (162)
406 3pfi_A Holliday junction ATP-d 43.9 12 0.00042 25.9 2.1 33 50-85 268-301 (338)
407 2vt3_A REX, redox-sensing tran 43.9 11 0.00039 25.7 1.9 33 48-83 20-53 (215)
408 3keo_A Redox-sensing transcrip 43.8 11 0.00037 25.9 1.8 33 49-84 20-53 (212)
409 2v79_A DNA replication protein 43.7 14 0.00049 23.4 2.3 25 59-86 50-74 (135)
410 3cec_A Putative antidote prote 43.7 15 0.00051 21.3 2.2 24 59-85 30-53 (104)
411 2g3b_A Putative TETR-family tr 43.4 6.8 0.00023 25.1 0.7 21 59-82 22-42 (208)
412 3c57_A Two component transcrip 43.2 21 0.00071 20.7 2.8 25 47-74 32-56 (95)
413 3bd1_A CRO protein; transcript 42.8 15 0.00052 20.1 2.1 21 62-85 13-33 (79)
414 1pdn_C Protein (PRD paired); p 42.8 18 0.00061 21.0 2.5 23 60-85 33-55 (128)
415 1hlv_A CENP-B, major centromer 42.6 23 0.00078 21.2 3.0 24 59-85 24-47 (131)
416 1g2h_A Transcriptional regulat 42.6 39 0.0013 18.1 3.8 22 62-86 35-56 (61)
417 3fmy_A HTH-type transcriptiona 42.5 20 0.0007 19.5 2.6 22 59-83 23-44 (73)
418 2pz9_A Putative regulatory pro 42.4 7.9 0.00027 25.0 0.9 21 59-82 49-69 (226)
419 2np3_A Putative TETR-family re 42.3 5.5 0.00019 25.3 0.1 26 54-82 43-69 (212)
420 3eup_A Transcriptional regulat 42.2 4.6 0.00016 25.1 -0.3 16 59-74 30-45 (204)
421 1x3u_A Transcriptional regulat 42.2 21 0.00073 19.3 2.6 16 59-74 30-45 (79)
422 1u78_A TC3 transposase, transp 42.0 18 0.00063 21.6 2.5 23 60-85 22-44 (141)
423 3mzy_A RNA polymerase sigma-H 41.9 18 0.00062 21.8 2.5 16 59-74 123-138 (164)
424 3g5g_A Regulatory protein; tra 41.4 17 0.00059 21.3 2.3 24 59-85 40-63 (99)
425 1b0n_A Protein (SINR protein); 41.2 17 0.0006 20.9 2.3 24 59-85 13-36 (111)
426 3lsj_A DEST; transcriptional r 40.7 9.2 0.00031 24.2 1.0 21 54-74 24-46 (220)
427 2pjp_A Selenocysteine-specific 40.5 9.7 0.00033 23.3 1.0 25 59-86 19-43 (121)
428 2o38_A Hypothetical protein; a 40.3 53 0.0018 19.9 4.5 24 59-85 52-75 (120)
429 2xpw_A Tetracycline repressor 40.1 8.4 0.00029 25.1 0.7 21 59-82 22-42 (207)
430 1lva_A Selenocysteine-specific 39.7 16 0.00055 25.2 2.2 34 50-86 146-180 (258)
431 1x57_A Endothelial differentia 39.7 19 0.00065 20.2 2.2 23 59-84 25-47 (91)
432 2glo_A Brinker CG9653-PA; prot 39.4 18 0.00061 19.1 1.9 20 63-85 28-47 (59)
433 1vz0_A PARB, chromosome partit 39.4 17 0.00059 24.9 2.3 25 60-87 134-158 (230)
434 2eby_A Putative HTH-type trans 39.4 19 0.00064 21.1 2.2 24 59-85 23-46 (113)
435 3npi_A TETR family regulatory 39.2 8.9 0.00031 25.1 0.8 21 59-82 37-57 (251)
436 2wus_R RODZ, putative uncharac 38.7 22 0.00075 21.6 2.5 22 59-83 19-40 (112)
437 2w7n_A TRFB transcriptional re 38.6 23 0.00077 21.7 2.5 24 59-85 33-56 (101)
438 3elk_A Putative transcriptiona 38.5 20 0.00069 21.9 2.3 42 41-87 10-57 (117)
439 2ofy_A Putative XRE-family tra 38.5 20 0.00068 19.7 2.1 20 62-84 29-48 (86)
440 3vk0_A NHTF, transcriptional r 38.1 18 0.0006 21.5 1.9 23 59-84 33-55 (114)
441 3uj3_X DNA-invertase; helix-tu 37.2 7.1 0.00024 25.5 0.0 30 50-85 151-180 (193)
442 3f52_A CLP gene regulator (CLG 37.2 23 0.00079 20.8 2.4 23 59-84 40-62 (117)
443 3hhh_A Transcriptional regulat 37.0 25 0.00084 21.5 2.5 41 41-86 9-55 (116)
444 3qwg_A ESX-1 secretion-associa 36.9 15 0.00052 22.8 1.6 13 59-71 23-35 (123)
445 2dt5_A AT-rich DNA-binding pro 36.6 36 0.0012 23.0 3.5 33 48-83 15-48 (211)
446 2z99_A Putative uncharacterize 36.4 21 0.00073 24.8 2.4 25 58-85 28-52 (219)
447 3op9_A PLI0006 protein; struct 36.2 22 0.00077 20.8 2.2 24 59-85 21-44 (114)
448 3eus_A DNA-binding protein; st 36.2 27 0.00091 19.6 2.4 22 59-83 26-47 (86)
449 1p4w_A RCSB; solution structur 35.9 21 0.00073 21.2 2.1 15 60-74 49-63 (99)
450 4ich_A Transcriptional regulat 35.7 21 0.00072 24.4 2.3 26 54-82 133-159 (311)
451 2l49_A C protein; P2 bacteriop 35.4 21 0.00073 20.1 2.0 22 59-83 16-37 (99)
452 2rnj_A Response regulator prot 35.3 20 0.00067 20.5 1.8 16 59-74 43-58 (91)
453 1s7o_A Hypothetical UPF0122 pr 35.0 27 0.00094 21.2 2.5 22 59-83 37-58 (113)
454 3ljx_A MMOQ response regulator 34.9 28 0.00096 24.2 2.8 32 50-86 25-56 (288)
455 2bnm_A Epoxidase; oxidoreducta 34.9 23 0.00079 22.6 2.3 24 59-85 22-45 (198)
456 1xsv_A Hypothetical UPF0122 pr 34.9 30 0.001 20.9 2.7 16 59-74 40-55 (113)
457 2k27_A Paired box protein PAX- 34.8 30 0.001 21.5 2.7 22 61-85 42-63 (159)
458 1rp3_A RNA polymerase sigma fa 34.5 28 0.00095 22.4 2.6 24 58-84 201-224 (239)
459 1or7_A Sigma-24, RNA polymeras 34.4 29 0.00099 21.7 2.6 16 59-74 155-170 (194)
460 3mlf_A Transcriptional regulat 34.2 25 0.00086 20.9 2.2 24 59-85 35-58 (111)
461 1xma_A Predicted transcription 34.1 17 0.00059 23.1 1.5 41 42-87 38-86 (145)
462 1k78_A Paired box protein PAX5 34.1 28 0.00097 21.3 2.5 23 60-85 48-70 (149)
463 2b0l_A GTP-sensing transcripti 33.9 12 0.00041 22.5 0.6 26 58-86 40-66 (102)
464 4bbr_M Transcription initiatio 33.9 58 0.002 23.6 4.5 38 37-85 171-208 (345)
465 3fym_A Putative uncharacterize 33.4 27 0.00093 21.5 2.3 22 59-83 15-36 (130)
466 3lfp_A CSP231I C protein; tran 33.0 31 0.0011 19.6 2.5 23 59-84 13-39 (98)
467 1yg2_A Gene activator APHA; vi 33.0 26 0.0009 22.6 2.3 35 47-86 4-46 (179)
468 3i7a_A Putative metal-dependen 32.8 24 0.00081 24.4 2.1 32 50-86 33-64 (281)
469 3h5t_A Transcriptional regulat 32.6 20 0.00069 24.9 1.8 24 59-85 8-31 (366)
470 3m1t_A Putative phosphohydrola 32.5 27 0.00093 24.1 2.4 32 50-86 24-55 (275)
471 3hot_A Transposable element ma 32.5 43 0.0015 23.1 3.5 26 58-86 84-109 (345)
472 4ac0_A Tetracycline repressor 32.4 10 0.00035 24.9 0.2 21 59-82 22-42 (202)
473 2lfw_A PHYR sigma-like domain; 32.4 30 0.001 21.4 2.5 16 59-74 108-123 (157)
474 2rek_A Putative TETR-family tr 32.3 23 0.0008 21.9 1.9 19 61-82 36-54 (199)
475 3hc1_A Uncharacterized HDOD do 32.1 29 0.001 24.2 2.6 25 59-86 43-67 (305)
476 2l02_A Uncharacterized protein 32.0 52 0.0018 19.5 3.3 24 50-74 13-36 (82)
477 1y9q_A Transcriptional regulat 32.0 27 0.00091 22.3 2.2 24 59-85 23-46 (192)
478 3l7w_A Putative uncharacterize 31.7 19 0.00066 21.4 1.4 38 45-87 9-50 (108)
479 3kxa_A NGO0477 protein, putati 31.3 36 0.0012 21.2 2.7 24 59-85 80-103 (141)
480 3ivp_A Putative transposon-rel 30.6 36 0.0012 20.2 2.5 23 59-84 24-46 (126)
481 2vpr_A Tetracycline resistance 30.6 9.2 0.00031 25.0 -0.3 21 59-82 23-43 (207)
482 3tqn_A Transcriptional regulat 30.5 19 0.00064 21.6 1.2 26 58-86 30-56 (113)
483 2hin_A GP39, repressor protein 30.4 35 0.0012 19.4 2.2 18 62-82 12-29 (71)
484 3c3w_A Two component transcrip 30.2 39 0.0013 21.8 2.8 33 47-85 154-190 (225)
485 3u5c_Z RP45, S31, YS23, 40S ri 30.1 29 0.001 21.7 2.0 26 59-87 58-83 (108)
486 4ghj_A Probable transcriptiona 29.6 34 0.0012 20.4 2.2 21 59-82 48-68 (101)
487 3lmm_A Uncharacterized protein 29.5 27 0.00092 27.2 2.1 36 47-86 432-467 (583)
488 2ek5_A Predicted transcription 29.2 30 0.001 21.4 2.0 26 58-86 25-51 (129)
489 3c7j_A Transcriptional regulat 29.1 26 0.00088 23.7 1.8 27 58-87 47-73 (237)
490 2rn7_A IS629 ORFA; helix, all 28.7 23 0.0008 20.6 1.4 22 61-85 31-52 (108)
491 1b4a_A Arginine repressor; hel 28.6 57 0.002 21.0 3.3 34 50-87 10-48 (149)
492 1fx7_A Iron-dependent represso 28.4 26 0.0009 23.4 1.7 22 62-86 26-47 (230)
493 3r1f_A ESX-1 secretion-associa 28.3 24 0.00083 22.1 1.4 13 59-71 25-37 (135)
494 3by6_A Predicted transcription 28.3 21 0.00073 21.9 1.2 26 58-86 32-58 (126)
495 1ais_B TFB TFIIB, protein (tra 27.8 78 0.0027 20.4 4.0 25 58-85 163-187 (200)
496 2jvl_A TRMBF1; coactivator, he 27.6 33 0.0011 20.1 1.9 22 59-83 48-69 (107)
497 2ppx_A AGR_C_3184P, uncharacte 27.1 41 0.0014 19.2 2.3 22 59-83 42-63 (99)
498 2esh_A Conserved hypothetical 26.7 90 0.0031 18.6 3.9 27 43-71 11-37 (118)
499 2qq9_A Diphtheria toxin repres 26.6 27 0.00093 23.4 1.5 26 58-86 22-47 (226)
500 3plo_X DNA-invertase; resolvas 26.4 14 0.00047 24.2 0.0 23 60-85 158-180 (193)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.43 E-value=1.4e-13 Score=101.26 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 23 LKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 23 ~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++...+++++.||+.+++|++|++|||||+|++.++|+|++|||+++|+++ ..+.|+||+|
T Consensus 6 ~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~---~~l~rlLr~L 67 (353)
T 4a6d_A 6 DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASA---HGTELLLDIC 67 (353)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCH---HHHHHHHHHH
Confidence 3677788999999999999999999999999998779999999999999999 9999999975
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.41 E-value=2.9e-13 Score=99.95 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=63.0
Q ss_pred CcHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCC--CCCChhhHHHHHhcC
Q 041968 18 SSSELLKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDI--QKNKAHCIQRLMRIL 87 (87)
Q Consensus 18 ~~~~~~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~--~~~~~~~L~RlLR~L 87 (87)
...++.+++..++++.++++.+++|++|++|||||+|++++ +|+|++|||+++|+ +|.++..|+|+||+|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L 85 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLL 85 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHH
Confidence 56778999999999999999999999999999999999865 79999999999998 884344999999975
No 3
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.38 E-value=5.4e-13 Score=97.30 Aligned_cols=69 Identities=45% Similarity=0.781 Sum_probs=62.6
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 19 SSELLKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 19 ~~~~~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..+.+++...+++++++++.+++|+++++|||||+|++.++|+|++|||+++|++|.+...++|+||+|
T Consensus 10 ~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L 78 (352)
T 1fp2_A 10 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYL 78 (352)
T ss_dssp STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHH
Confidence 467889999999999999999999999999999999976579999999999999765568999999975
No 4
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.36 E-value=7.5e-13 Score=97.32 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=60.8
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 19 SSELLKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 19 ~~~~~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..+.+++..+++++++|++.+++|+++++|||||+|+++++|+|++|||+++|+++ ..++|+||+|
T Consensus 9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~---~~l~rlLr~l 74 (363)
T 3dp7_A 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTR---YAAQVLLEAS 74 (363)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCH---HHHHHHHHHH
Confidence 34577888999999999999999999999999999997568999999999999999 9999999975
No 5
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.35 E-value=6.1e-13 Score=97.20 Aligned_cols=68 Identities=47% Similarity=0.855 Sum_probs=60.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 20 SELLKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 20 ~~~~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
++.+++...+++++++++.+++|+++++|||||+|+++++|+|++|||+++|++|.++..|+|+||+|
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L 72 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLL 72 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 45677788899999999999999999999999999976579999999999999765568999999985
No 6
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.35 E-value=8.2e-13 Score=97.53 Aligned_cols=69 Identities=23% Similarity=0.304 Sum_probs=59.4
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhC---CCCCCHHHHHHhcC-CCCCChhhHHHHHhcC
Q 041968 19 SSELLKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKH---GQPMTLSQIASALD-IQKNKAHCIQRLMRIL 87 (87)
Q Consensus 19 ~~~~~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~---~gp~S~~ELA~~~~-~~~~~~~~L~RlLR~L 87 (87)
..++.++...++++++|++.+++|++|++|||||+|++. ++|+|++|||+++| .+|.++..|+|+||+|
T Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L 87 (368)
T 3reo_A 15 HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLL 87 (368)
T ss_dssp --CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHH
Confidence 446788889999999999999999999999999999974 35899999999998 5775456999999975
No 7
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.23 E-value=1.1e-11 Score=90.39 Aligned_cols=61 Identities=23% Similarity=0.464 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 22 LLKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 22 ~~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..++...++++++|++.+++|+++++|||||+|. +||+|++|||+++|+++ ..++|+||+|
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~--~g~~t~~elA~~~g~~~---~~l~rlLr~l 79 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLV--DGPRTPAELAAATGTDA---DALRRVLRLL 79 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGT--TSCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhh--CCCCCHHHHHHHhCcCH---HHHHHHHHHH
Confidence 4578888999999999999999999999999998 47999999999999999 9999999975
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.22 E-value=1.2e-11 Score=90.77 Aligned_cols=69 Identities=28% Similarity=0.396 Sum_probs=57.2
Q ss_pred cHHhHHHHHHHH--HHHHHHHHHHHHHHHHHhCchHHHHhCCCC---CCHHHHHHhcCC---CCCChhhHHHHHhcC
Q 041968 19 SSELLKAQAQVW--NCAFNYINSMSLKCAVELGIPDVIHKHGQP---MTLSQIASALDI---QKNKAHCIQRLMRIL 87 (87)
Q Consensus 19 ~~~~~~~~~~l~--~l~~g~~~~~aL~aaveLgI~d~L~~~~gp---~S~~ELA~~~~~---~~~~~~~L~RlLR~L 87 (87)
.++..+++..++ +++++++.+++|+++++|||||+|++.++| +|++|||+++|+ +|.++..++|+||+|
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L 92 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLL 92 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHH
Confidence 344566777777 999999999999999999999999974326 999999999999 655558999999975
No 9
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.19 E-value=3.6e-11 Score=86.51 Aligned_cols=59 Identities=25% Similarity=0.304 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 24 KAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 24 ~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
++...+++++++++.+++|+++++|||||+|. ++|.|++|||+++|+++ ..++|+||+|
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~--~~~~t~~ela~~~~~~~---~~l~r~Lr~L 65 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIE--SGIDSDETLAAAVGSDA---ERIHRLMRLL 65 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH--TTCCSHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHh--CCCCCHHHHHHHhCcCH---HHHHHHHHHH
Confidence 55678999999999999999999999999997 47999999999999999 9999999975
No 10
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.18 E-value=3.6e-11 Score=87.69 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=58.0
Q ss_pred cHHhHHHHHHHHHHHH-HHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 19 SSELLKAQAQVWNCAF-NYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 19 ~~~~~~~~~~l~~l~~-g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++..+....++++++ |++.+++|+++++|||||.|++ +|.|++|||+++|+++ ..++|+||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~---~~l~rlLr~L 88 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVP---PRLEMLLETL 88 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcCh---HHHHHHHHHH
Confidence 4456778888899987 8999999999999999999984 8999999999999999 9999999975
No 11
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.18 E-value=2.1e-11 Score=89.71 Aligned_cols=61 Identities=26% Similarity=0.442 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 22 LLKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 22 ~~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.+....+++++++++.+++|+++++|||||+|. ++|+|++|||+++|+++ ..++|+||+|
T Consensus 35 ~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~--~g~~t~~eLA~~~g~~~---~~l~rlLr~L 95 (369)
T 3gwz_A 35 RAAAEETVNDILQGAWKARAIHVAVELGVPELLQ--EGPRTATALAEATGAHE---QTLRRLLRLL 95 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGT--TSCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhc--CCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 4566678999999999999999999999999998 47999999999999999 9999999975
No 12
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.11 E-value=3.3e-11 Score=86.94 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 28 QVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 28 ~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.+++++.||+.+++|+++++|||||+|. +||+|++|||+++|+++ ..++|+||+|
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~--~g~~t~~elA~~~~~~~---~~l~rlLr~l 62 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIA--AGHRTAAEIASAAGAHA---DSLDRLLRHL 62 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHH--TTCCBHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHh--cCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 4678899999999999999999999998 47999999999999999 9999999975
No 13
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.11 E-value=7.2e-11 Score=85.44 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 25 AQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 25 ~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
....+++++++++.+++|+++++|||||+|. + |+|++|||+++|+++ ..++|+||+|
T Consensus 24 ~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~--~-~~t~~elA~~~~~~~---~~l~rlLr~L 80 (352)
T 3mcz_A 24 SVVDLVKLSDQYRQSAILHYAVADKLFDLTQ--T-GRTPAEVAASFGMVE---GKAAILLHAL 80 (352)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT--S-CBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCChHHHhC--C-CCCHHHHHHHhCcCh---HHHHHHHHHH
Confidence 3344899999999999999999999999997 3 999999999999999 9999999975
No 14
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.10 E-value=4e-11 Score=87.24 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 23 LKAQAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 23 ~~~~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.+....+++++++++.+++|+++++|||||.|. ++|+|+.|||+++|+++ ..+.|+||+|
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~--~~~~t~~eLA~~~g~~~---~~l~r~Lr~L 73 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHP---QALSRLVRHL 73 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHH--TTCCSHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHh--CCCCCHHHHHHHhCcCH---HHHHHHHHHH
Confidence 344557889999999999999999999999996 48999999999999999 9999999975
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.07 E-value=1.1e-10 Score=83.61 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 27 AQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 27 ~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..+++++++++.+++|+++++|||||.|++ +|.|++|||+++|+++ ..++|+||+|
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~---~~l~r~L~~L 63 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSE---RGMRMLCDYL 63 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCc---hHHHHHHHHH
Confidence 467889999999999999999999999984 8999999999999999 9999999975
No 16
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=98.89 E-value=1.8e-09 Score=78.29 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 26 QAQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 26 ~~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
...+++++++++.+++|+++++|||||.|. ++|.|+.|||+.+|+++ ..+.|+||+|
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~--~~~~t~~ela~~~~~~~---~~l~r~L~~L 76 (360)
T 1tw3_A 20 ALRTLIRLGSLHTPMVVRTAATLRLVDHIL--AGARTVKALAARTDTRP---EALLRLIRHL 76 (360)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHTTHHHHHH--TTCCBHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhCHHHHHh--CCCCCHHHHHHHhCcCH---HHHHHHHHHH
Confidence 456789999999999999999999999996 58999999999999999 9999999975
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.11 E-value=0.0017 Score=37.30 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=31.5
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+..|.+.|.++++|+|..|||+.+|++. ..+.|++..|
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr---~tv~~~l~~L 49 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPK---KTLNQVLYRL 49 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 5568888877567999999999999998 8888887643
No 18
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.25 E-value=0.0068 Score=35.25 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHhCchHHHHhCC-CCCCHHHHHHhc-----CCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHG-QPMTLSQIASAL-----DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~-gp~S~~ELA~~~-----~~~~~~~~~L~RlLR~L 87 (87)
.+..|.+.|.+.+ ++.|+.||++.+ ++++ ..++|.|+.|
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~---~TVyR~L~~L 62 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGL---ATVYRVLNQF 62 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCH---hhHHHHHHHH
Confidence 3456888887655 799999999999 7887 8999998754
No 19
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=95.12 E-value=0.0067 Score=43.14 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=30.2
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.|.+.++..++++|+.|||+.+|.+. ..++|+|+.|
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~k---sTv~RlL~tL 69 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPK---SSAHGLLAVM 69 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC-----CHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 457888887778899999999999999 8899999754
No 20
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.77 E-value=0.01 Score=37.32 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHhCchHHHHhCCCC-CCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQP-MTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp-~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.+..|...|.+.++| +|+.|||+.+++++ ..++|.++.|
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~---sTV~r~L~~L 66 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDV---STVQRSVKKL 66 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 355677778776677 99999999999998 8899888653
No 21
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=94.41 E-value=0.019 Score=39.86 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=30.9
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.|.+.|.+.++++|+.|||+.+|.++ ..++|+|+.|
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~---stv~r~l~~L 47 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSV---SNAYKYMVVL 47 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 456777877656899999999999999 8899998754
No 22
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.33 E-value=0.032 Score=33.18 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=28.5
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|.+.|.+. |.+|+.|||+.+++++ ..++|-|..|
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~VS~---~TIRrdL~~L 40 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNTPQ---PMINAMLQQL 40 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTCCH---HHHHHHHHHH
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCH---HHHHHHHHHH
Confidence 56677764 8999999999999999 9999988653
No 23
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.17 E-value=0.017 Score=34.34 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=27.1
Q ss_pred chHHHHhC-----CCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 50 IPDVIHKH-----GQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 50 I~d~L~~~-----~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|.+.|.+. |+|.|+.|||+.+|+.+ ..+.|-|..|
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgvS~---~TVrr~L~~L 48 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGLSI---YQVRLYLEQL 48 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCCCH---HHHHHHHHHH
Confidence 45555544 78999999999999987 7788877654
No 24
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=94.11 E-value=0.017 Score=40.14 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=30.8
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.|.+.|.+.++++|+.|||+.+|+++ ..++|+|+.|
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~---stv~r~l~~L 45 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPR---STVQRIINAL 45 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCH---HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 456777876557899999999999999 8899998754
No 25
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=93.86 E-value=0.02 Score=33.56 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=31.0
Q ss_pred HHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 45 AVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 45 aveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
-.++.|...|.+ +++.|..|||+.+|+++ ..+.|.++.|
T Consensus 24 ~~~~~il~~l~~-~~~~s~~ela~~l~is~---~tvs~~l~~L 62 (99)
T 3cuo_A 24 PKRLLILCMLSG-SPGTSAGELTRITGLSA---SATSQHLARM 62 (99)
T ss_dssp HHHHHHHHHHTT-CCSEEHHHHHHHHCCCH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHh-CCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 456677777865 47999999999999998 8888877643
No 26
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.63 E-value=0.048 Score=31.61 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.2
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.|.+.|.+. ++.|..|||+.+|+++ ..+.|.|+.|
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgvs~---~tv~r~L~~L 38 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAVTD---YQARYYLLLL 38 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTSCH---HHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 466777764 7899999999999998 8888887643
No 27
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=93.58 E-value=0.0075 Score=42.42 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=30.7
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.|.+.+.+.++++|+.|||+.+|.++ ..++|+|+.|
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~k---sT~~RlL~tL 45 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNK---ATVYRLMSEL 45 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCH---HHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 346777776558999999999999999 8999999754
No 28
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=93.55 E-value=0.035 Score=33.82 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=28.5
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|.+.|.+. |.+|+.|||+.+++++ ..++|.|..|
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~VS~---~TIRrDL~~L 40 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQTPQ---PLIDAMLERM 40 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTCCH---HHHHHHHHHH
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCH---HHHHHHHHHH
Confidence 56677764 8999999999999999 9999988653
No 29
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=93.34 E-value=0.067 Score=33.42 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+++.|+.|||+.+++++ ..+.|+|+.|
T Consensus 24 ~~~~s~~ela~~~~i~~---~~v~~il~~L 50 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSE---HYLEQLVSPL 50 (129)
T ss_dssp SCCBCHHHHHHHTTSCH---HHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 47899999999999999 9999998754
No 30
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=93.08 E-value=0.049 Score=32.35 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 42 LKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 42 L~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.--.++.|.+.| + ++.|..|||+.+++++ ..+.|.++.|
T Consensus 28 l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~---~tv~~~L~~L 67 (96)
T 1y0u_A 28 VTNPVRRKILRML-D--KGRSEEEIMQTLSLSK---KQLDYHLKVL 67 (96)
T ss_dssp HSCHHHHHHHHHH-H--TTCCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred hCCHHHHHHHHHH-c--CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 3344566788888 4 6899999999999998 8888887753
No 31
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=93.06 E-value=0.032 Score=32.67 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=32.8
Q ss_pred HHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 41 SLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 41 aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.--.++.|...|... ++.|..|||+.+++++ ..+.|.++.
T Consensus 12 ~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~is~---~tvs~~l~~ 53 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTP---GNLDSHIRV 53 (100)
T ss_dssp HHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCH---HHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhc-CCcCHHHHHHHHCcCH---HHHHHHHHH
Confidence 44445667778877653 6899999999999999 888888764
No 32
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=93.05 E-value=0.051 Score=33.91 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 42 LKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 42 L~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|.--.++.|+..|.. .++.|+.|||+.+|+++ ..+.|.|+.|
T Consensus 39 l~~~~rl~IL~~L~~-~~~~s~~eLa~~l~is~---stvs~~L~~L 80 (122)
T 1u2w_A 39 IADENRAKITYALCQ-DEELCVCDIANILGVTI---ANASHHLRTL 80 (122)
T ss_dssp HHSHHHHHHHHHHHH-SSCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 333456778888875 37899999999999998 8888877653
No 33
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=93.01 E-value=0.021 Score=39.92 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=30.0
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.|.+.|.+.++++|+.|||+.+|+++ ..++|+|+.|
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~---stv~r~l~~L 53 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSR---PAVRRILLTL 53 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 345666765557899999999999999 8899998753
No 34
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=92.78 E-value=0.08 Score=31.60 Aligned_cols=36 Identities=8% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
..+.|...|. .||.|+.|||+.+|+++ ..+.+-|+.
T Consensus 24 ~r~~Il~~L~--~~~~~~~ela~~l~is~---~tvs~~L~~ 59 (102)
T 3pqk_A 24 VRLMLVCTLV--EGEFSVGELEQQIGIGQ---PTLSQQLGV 59 (102)
T ss_dssp HHHHHHHHHH--TCCBCHHHHHHHHTCCT---THHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 4556677776 37899999999999998 777777664
No 35
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=92.76 E-value=0.021 Score=40.07 Aligned_cols=36 Identities=11% Similarity=0.286 Sum_probs=29.0
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.|.+.|.+.++++|+.|||+.+|+++ ..++|+|+.|
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~k---stv~r~l~tL 62 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPK---TTVVRLVATM 62 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCH---HHHHHHHHHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 45566654457999999999999999 8899998754
No 36
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.68 E-value=0.22 Score=30.26 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=29.5
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++.|+..|.+ ++.|..|||+.+++++ ..+.|.++.|
T Consensus 33 ~~~~il~~L~~--~~~s~~ela~~l~is~---stvsr~l~~L 69 (119)
T 2lkp_A 33 SRLMILTQLRN--GPLPVTDLAEAIGMEQ---SAVSHQLRVL 69 (119)
T ss_dssp HHHHHHHHHHH--CCCCHHHHHHHHSSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 45667777775 5799999999999998 8888877643
No 37
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=92.66 E-value=0.019 Score=40.40 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=30.1
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.|.+.|...++++|+.|||+.+|.++ ..++|+|+.|
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~---stv~r~l~tL 60 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTR---ATARRFLLTL 60 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 345676765458899999999999999 8899998754
No 38
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=92.57 E-value=0.045 Score=33.85 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=32.5
Q ss_pred HHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 41 SLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 41 aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+|.--..+.|...|. .+|.|+.|||+.+|+++ ..+.+.|+.|
T Consensus 14 al~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~---~tvs~hL~~L 55 (118)
T 3f6o_A 14 ALADPTRRAVLGRLS--RGPATVSELAKPFDMAL---PSFMKHIHFL 55 (118)
T ss_dssp HHTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCH---HHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCH---HHHHHHHHHH
Confidence 333446777888887 48999999999999998 7787777643
No 39
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.57 E-value=0.054 Score=31.76 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=29.4
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.+..|...|... ++.|..|||+.+++++ ..+.|.++.|
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~is~---~tv~~~l~~L 58 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDLSA---RFVRDRLKVL 58 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHH
Confidence 345566667653 7899999999999999 8888887643
No 40
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.39 E-value=0.074 Score=32.16 Aligned_cols=37 Identities=11% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++.|+..|.+ ++.|+.|||+.+|+++ ..+.|.|+.|
T Consensus 27 ~r~~IL~~L~~--~~~~~~ela~~l~is~---stvs~~L~~L 63 (106)
T 1r1u_A 27 NRIRIMELLSV--SEASVGHISHQLNLSQ---SNVSHQLKLL 63 (106)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 44566666763 7899999999999998 7788877643
No 41
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=92.35 E-value=0.077 Score=35.19 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 38 NSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 38 ~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.-.+|++.+.|.. ...++|.|+.|||+.+++++ ..+.++|+.|
T Consensus 26 ~~yAlr~L~~LA~----~~~~~~~s~~eIA~~~~i~~---~~l~kil~~L 68 (159)
T 3lwf_A 26 GRYGLTITLELAK----RIGDGPISLRSIAQDKNLSE---HYLEQLIGPL 68 (159)
T ss_dssp HHHHHHHHHHHHH----TTTSCCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----cCCCCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 3456666666543 22247899999999999999 9999998754
No 42
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=92.19 E-value=0.052 Score=32.84 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=26.9
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.|.+.|.++|+|+++.|||+.+|+|. --+.++|.
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdK---KeVdKaik 56 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPK---RELNQVLY 56 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCH---HHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCH---HHHHHHHH
Confidence 45677777789999999999999987 55555553
No 43
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=92.18 E-value=0.37 Score=30.14 Aligned_cols=37 Identities=8% Similarity=0.259 Sum_probs=27.6
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|...++++|..|||+.+++++ ..+.|+++-
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i~~---~tvs~~l~~ 85 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKVTN---GNVSGLVNR 85 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSSCC---SCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCh---hhHHHHHHH
Confidence 4446666744457999999999999998 667776653
No 44
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=92.12 E-value=0.039 Score=32.75 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=30.8
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
--.++.|...|.+ ++.|+.|||+.+|+++ ..+.|.|+.|
T Consensus 22 ~~~r~~Il~~L~~--~~~~~~ela~~l~is~---~tvs~~L~~L 60 (98)
T 3jth_A 22 NERRLQILCMLHN--QELSVGELCAKLQLSQ---SALSQHLAWL 60 (98)
T ss_dssp SHHHHHHHHHTTT--SCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHhc--CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 3355677777874 7999999999999998 7788877653
No 45
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=92.07 E-value=0.072 Score=32.05 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=29.0
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++.|...|. .++.|..|||+.+|+++ ..+.|.++.|
T Consensus 22 ~r~~IL~~L~--~~~~~~~ela~~l~is~---~tv~~~l~~L 58 (114)
T 2oqg_A 22 TRWEILTELG--RADQSASSLATRLPVSR---QAIAKHLNAL 58 (114)
T ss_dssp HHHHHHHHHH--HSCBCHHHHHHHSSSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 4556677774 37899999999999999 8888887643
No 46
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=92.04 E-value=0.49 Score=29.10 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 45 AVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 45 aveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
..+..|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~ 74 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCRDK---ALITRKIRE 74 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCCCH---HHHHHHHHH
Confidence 4566677778764 6899999999999998 777777653
No 47
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=91.98 E-value=0.093 Score=31.99 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=27.9
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
++.|...|. .++.|+.|||+.+|+++ ..+.|.|+.|
T Consensus 27 r~~IL~~L~--~~~~s~~eLa~~lgis~---stvs~~L~~L 62 (108)
T 2kko_A 27 RLQILDLLA--QGERAVEAIATATGMNL---TTASANLQAL 62 (108)
T ss_dssp THHHHHHHT--TCCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHH--cCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 345566666 37899999999999998 8788877643
No 48
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.72 E-value=0.092 Score=33.19 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=32.9
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhc-----CCCCCChhhHHHHHhcC
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASAL-----DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~-----~~~~~~~~~L~RlLR~L 87 (87)
+-.+.-|.+.|.+.+++.|+.||.+.+ +++. ..++|.|+.|
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~---~TVYR~L~~L 55 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGL---TTVYRTLQSM 55 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH---hhHHHHHHHH
Confidence 445667888888767899999999998 5566 8899998764
No 49
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=91.34 E-value=0.074 Score=32.16 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=27.5
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
....|.+.|.++ | +|+.|||+.+|++. ..++|.|.-
T Consensus 18 ~~~~IL~lL~~~-g-~sa~eLAk~LgiSk---~aVr~~L~~ 53 (82)
T 1oyi_A 18 IVCEAIKTIGIE-G-ATAAQLTRQLNMEK---REVNKALYD 53 (82)
T ss_dssp HHHHHHHHHSSS-T-EEHHHHHHHSSSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-C-CCHHHHHHHHCcCH---HHHHHHHHH
Confidence 445566777753 4 99999999999998 777777653
No 50
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.34 E-value=0.08 Score=31.64 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=28.1
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChh-hHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAH-CIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~-~L~RlLR~ 86 (87)
+-.|.+.|.+. ||.|+.+||+.+|+.+ . .+.|.|..
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgit~---~~aVr~hL~~ 49 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGLTK---ARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCGGG---HHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCCCc---HHHHHHHHHH
Confidence 34566677764 7999999999999999 7 77777653
No 51
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=91.34 E-value=0.093 Score=33.87 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 39 SMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..+|++.+.|... ..+++.|..|||+.+++++ ..+.++|+.|
T Consensus 11 ~yAl~~L~~La~~----~~~~~~s~~~IA~~~~i~~---~~l~kil~~L 52 (143)
T 3t8r_A 11 RYGLTLMISLAKK----EGQGCISLKSIAEENNLSD---LYLEQLVGPL 52 (143)
T ss_dssp HHHHHHHHHHHTT----TTSCCEEHHHHHHHTTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCCCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 4456666655431 2236899999999999999 9999998754
No 52
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.27 E-value=0.064 Score=31.48 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+++.|..|||+.+|+++ ..+.|.++.|
T Consensus 34 ~~~~t~~ela~~l~is~---~tv~~~l~~L 60 (109)
T 2d1h_A 34 EKPITSEELADIFKLSK---TTVENSLKKL 60 (109)
T ss_dssp CSCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 47899999999999999 8888888653
No 53
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=91.23 E-value=0.12 Score=32.74 Aligned_cols=37 Identities=11% Similarity=0.363 Sum_probs=29.1
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|.+.|.+ +++.|..|||+.+|+++ ..+.|.++.
T Consensus 6 ~d~~il~~L~~-~~~~s~~ela~~lg~s~---~tv~~~l~~ 42 (144)
T 2cfx_A 6 IDLNIIEELKK-DSRLSMRELGRKIKLSP---PSVTERVRQ 42 (144)
T ss_dssp HHHHHHHHHHH-CSCCCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 35567788876 47899999999999988 777776653
No 54
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=91.20 E-value=0.074 Score=32.18 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=27.8
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+.|...+.+.|++.|..|||+.+|++. ..+.+.|+.
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs~---~tV~~~L~~ 56 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKV---NDVRKKLNL 56 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 3456666654455899999999999988 778777764
No 55
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=91.20 E-value=0.11 Score=32.97 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=29.5
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|.+ +++.|..|||+.+|+++ ..+.|.++-
T Consensus 4 ~~~~il~~L~~-~~~~~~~ela~~lg~s~---~tv~~~l~~ 40 (150)
T 2pn6_A 4 IDLRILKILQY-NAKYSLDEIAREIRIPK---ATLSYRIKK 40 (150)
T ss_dssp HHHHHHHHHTT-CTTSCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 45667888876 47899999999999998 777776654
No 56
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=91.19 E-value=0.45 Score=30.03 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=27.6
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~~~---~~vs~~l~~ 90 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVMEQ---STTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 33455667654 6899999999999999 778777653
No 57
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=91.04 E-value=0.13 Score=32.72 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=29.0
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|.+ +++.|..|||+.+|+++ ..+.|.++-
T Consensus 8 ~~~~iL~~L~~-~~~~s~~ela~~lg~s~---~tv~~~l~~ 44 (150)
T 2w25_A 8 IDRILVRELAA-DGRATLSELATRAGLSV---SAVQSRVRR 44 (150)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 35567777876 47899999999999988 777776653
No 58
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=90.93 E-value=0.15 Score=32.74 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhc-----CCCCCChhhHHHHHhcC
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASAL-----DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~-----~~~~~~~~~L~RlLR~L 87 (87)
+-.+.-|.+.|.+.+++.|+.||.+.+ ++++ ..++|.|+.|
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~---aTVYR~L~~L 66 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSV---ATVYNNLRVF 66 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCh---hhHHHHHHHH
Confidence 345566888888767899999999999 4555 8899998764
No 59
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=90.84 E-value=0.15 Score=32.36 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=29.1
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|.+.|.+ +++.|..|||+.+|+++ ..+.|.++-
T Consensus 10 ~d~~il~~L~~-~~~~s~~ela~~lg~s~---~tv~~~l~~ 46 (151)
T 2dbb_A 10 VDMQLVKILSE-NSRLTYRELADILNTTR---QRIARRIDK 46 (151)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHTTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 45567788876 47899999999999988 767666653
No 60
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=90.81 E-value=0.14 Score=33.06 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|.+.|.+ ++++|..|||+.+|+++ ..+.|.++-
T Consensus 11 ~~~~il~~L~~-~~~~s~~ela~~lg~s~---~tv~~~l~~ 47 (162)
T 2p5v_A 11 TDIKILQVLQE-NGRLTNVELSERVALSP---SPCLRRLKQ 47 (162)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 35567777876 47899999999999988 777776653
No 61
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=90.76 E-value=0.15 Score=32.60 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=29.0
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|.+.|.++ ++.|..|||+.+|+++ ..+.|.++-
T Consensus 8 ~~~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~ 44 (151)
T 2cyy_A 8 IDKKIIKILQND-GKAPLREISKITGLAE---STIHERIRK 44 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 355677778764 7899999999999988 777776653
No 62
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=90.69 E-value=0.13 Score=33.21 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 38 NSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 38 ~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
...+|++.+.|... .+++.|+.|||+.+++++ ..+.++|+.|
T Consensus 13 ~~yAl~~L~~La~~-----~~~~~~~~~iA~~~~i~~---~~l~kil~~L 54 (149)
T 1ylf_A 13 FSIAVHILSILKNN-----PSSLCTSDYMAESVNTNP---VVIRKIMSYL 54 (149)
T ss_dssp HHHHHHHHHHHHHS-----CGGGCCHHHHHHHHTSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----CCCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 34577777766431 247899999999999999 9999998754
No 63
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.64 E-value=0.085 Score=30.93 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=28.4
Q ss_pred HHhCchHHHHhCC--CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 46 VELGIPDVIHKHG--QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 46 veLgI~d~L~~~~--gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+-.|.+.|.+.+ +++|+.|||+.+|++. ..+.|.|.
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~---~tV~~~L~ 53 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTPK---KEINRVLY 53 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCCH---HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH---HHHHHHHH
Confidence 4566777787643 4899999999999988 66777664
No 64
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=90.50 E-value=1.1 Score=27.65 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=25.8
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|...| . .++.|..|||+.+++++ ..+.|+++-
T Consensus 43 iL~~l-~-~~~~t~~eLa~~l~~~~---~~vs~~l~~ 74 (151)
T 3kp7_A 43 VLNML-S-IEALTVGQITEKQGVNK---AAVSRRVKK 74 (151)
T ss_dssp HHHHH-H-HSCBCHHHHHHHHCSCS---SHHHHHHHH
T ss_pred HHHHH-H-cCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 66667 4 48999999999999999 777777653
No 65
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=90.49 E-value=0.08 Score=31.80 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=28.0
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++.|+..+.. .|+.|+.|||+.+|+++ ..+.|-|+.|
T Consensus 28 ~Rl~IL~~l~~-~~~~~~~ela~~l~is~---stvs~hL~~L 65 (99)
T 2zkz_A 28 MRLKIVNELYK-HKALNVTQIIQILKLPQ---STVSQHLCKM 65 (99)
T ss_dssp HHHHHHHHHHH-HSCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 45556644443 27899999999999998 7788777643
No 66
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=90.47 E-value=0.13 Score=32.25 Aligned_cols=37 Identities=14% Similarity=0.373 Sum_probs=29.4
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++.|+..|.+ ++.|+.|||+.+|+++ ..+.|.|+.|
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgis~---stvs~~L~~L 83 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGVSE---SAVSHQLRSL 83 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 45667777763 7899999999999998 7788777643
No 67
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=90.38 E-value=0.16 Score=32.32 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|.+.|.++ ++.|..|||+.+|+++ ..+.|.++-
T Consensus 9 ~d~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~ 45 (152)
T 2cg4_A 9 LDRGILEALMGN-ARTAYAELAKQFGVSP---ETIHVRVEK 45 (152)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 355677778764 7899999999999988 777766653
No 68
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=90.28 E-value=0.11 Score=31.97 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=26.3
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+...|....+|.|..|||+.+|+++ ..+.|+++-
T Consensus 31 il~~L~~~~~~~t~~ela~~l~~~~---stvs~~l~~ 64 (152)
T 1ku9_A 31 VYAILYLSDKPLTISDIMEELKISK---GNVSMSLKK 64 (152)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 4555542347899999999999998 888888764
No 69
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=90.24 E-value=0.15 Score=33.16 Aligned_cols=36 Identities=8% Similarity=0.258 Sum_probs=28.5
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+..|.+.|.+ ++++|..|||+.+|+++ ..+.|-++
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~s~---~tv~~rl~ 39 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGLST---TPCWRRIQ 39 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTCCH---HHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 46678888886 48999999999999988 66655544
No 70
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=90.24 E-value=0.15 Score=31.86 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.+..+||+..|.+ |+.|-.|||+.+|++. ..+.|+=|+|
T Consensus 44 l~~R~~l~~~L~~--ge~TQREIA~~lGiS~---stISRi~r~L 82 (101)
T 1jhg_A 44 LGTRVRIIEELLR--GEMSQRELKNELGAGI---ATITRGSNSL 82 (101)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHHCCCh---hhhhHHHHHH
Confidence 4456888988873 7899999999999999 8888876643
No 71
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=90.19 E-value=0.12 Score=32.21 Aligned_cols=38 Identities=8% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|...++++|..|||+.+++++ ..+.|+++-
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~---~tvs~~l~~ 77 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDP---SQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCH---hHHHHHHHH
Confidence 44555666766567899999999999998 777777653
No 72
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=90.18 E-value=0.18 Score=31.51 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=28.0
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|.+ +++.|..|||+.+|+++ ..+.|.++.
T Consensus 6 ~~~il~~L~~-~~~~~~~ela~~lg~s~---~tv~~~l~~ 41 (141)
T 1i1g_A 6 DKIILEILEK-DARTPFTEIAKKLGISE---TAVRKRVKA 41 (141)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 4556777776 47899999999999988 777776653
No 73
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=90.05 E-value=0.16 Score=31.06 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=27.8
Q ss_pred HhCchHHHHhCCC-CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQ-PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~g-p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|...++ +.|..|||+.+++++ ..+.|+++-
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~~~---~tvs~~l~~ 73 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSIKS---STATVLLQR 73 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCc---chHHHHHHH
Confidence 3445566766543 899999999999998 777777754
No 74
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=89.90 E-value=0.15 Score=31.05 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=29.4
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.++.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 39 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~ 75 (140)
T 2nnn_A 39 TQWAALVRLGET-GPCPQNQLGRLTAMDA---ATIKGVVER 75 (140)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 355677777764 6999999999999998 878887764
No 75
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=89.88 E-value=0.082 Score=32.74 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++.|...|. .++.|..|||+.+|+++ ..+.|.|+.|
T Consensus 22 ~r~~IL~~L~--~~~~~~~eLa~~lgis~---stvs~~L~~L 58 (118)
T 2jsc_A 22 TRCRILVALL--DGVCYPGQLAAHLGLTR---SNVSNHLSCL 58 (118)
T ss_dssp HHHHHHHHHH--TTCCSTTTHHHHHSSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 4566777776 36899999999999998 8888877643
No 76
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.74 E-value=0.27 Score=30.32 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=29.7
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.++.|...|....++.|..|||+.+++++ ..+.|+++-
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i~~---~~vs~~l~~ 73 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERMRS---SNLAALLRE 73 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCCh---hhHHHHHHH
Confidence 45667777776347899999999999998 778777754
No 77
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=89.69 E-value=0.9 Score=27.97 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=27.6
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~~~---~~vs~~l~~ 77 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQMKR---QYISRILQE 77 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 34455566654 6899999999999998 778777754
No 78
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=89.68 E-value=0.13 Score=31.51 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|...+ ++.|..|||+.+++++ ..+.|+++-
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~---~tvs~~l~~ 70 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTG---PTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCc---ccHHHHHHH
Confidence 3455666677654 6999999999999998 778777653
No 79
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.62 E-value=0.18 Score=29.99 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHhCchHHHHhCC--CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 45 AVELGIPDVIHKHG--QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 45 aveLgI~d~L~~~~--gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
-++..|.+.|.+.+ .++|+.|||+.+|++. ..+.|.|.
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr---~tV~~~L~ 49 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPK---KEINRVLY 49 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH---HHHHHHHH
Confidence 34566777777642 4899999999999987 55665553
No 80
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=89.55 E-value=0.14 Score=32.25 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhc--CCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASAL--DIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~--~~~~~~~~~L~RlLR~ 86 (87)
.+-.|.+.|.++ |++|+.|||+.+ ++.+ ..+.+-++.
T Consensus 14 ~d~~IL~~L~~~-g~~s~~eLA~~l~~giS~---~aVs~rL~~ 52 (111)
T 3b73_A 14 WDDRILEIIHEE-GNGSPKELEDRDEIRISK---SSVSRRLKK 52 (111)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHTSTTCCSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHhcCCCH---HHHHHHHHH
Confidence 356678888764 799999999999 8887 777766654
No 81
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=89.38 E-value=0.13 Score=30.35 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=24.6
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhh-HHHHHh
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHC-IQRLMR 85 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~-L~RlLR 85 (87)
+...+.+.+++.|..|||+.+++++ .. +.|+++
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~---~t~vs~~l~ 53 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSE---KTFFMGLKD 53 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCH---HHHHTTHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCc---hHHHHHHHH
Confidence 3445555444899999999999998 77 666654
No 82
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=89.32 E-value=0.26 Score=31.92 Aligned_cols=41 Identities=12% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhc-----CCCCCChhhHHHHHhcC
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASAL-----DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~-----~~~~~~~~~L~RlLR~L 87 (87)
+-.+.-|.+.|.+.+++.|+.||...+ ++++ ..+||.|..|
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~---aTVYR~L~~L 71 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSI---SSVYRILNFL 71 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH---hhHHHHHHHH
Confidence 556677899998767899999999998 4555 8899998764
No 83
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=89.22 E-value=0.2 Score=30.83 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=28.0
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.++.|...|. .++.|..|||+.+++++ ..+.|+++-
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~~s~---~tvs~~l~~ 73 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYFVTQ---SAITASVDK 73 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhCCCc---hhHHHHHHH
Confidence 3445556676 58999999999999998 778877764
No 84
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=89.17 E-value=0.22 Score=32.79 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=28.6
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|.+.|.++ +++|..|||+.+|+++ ..+.|.++-
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~---~tv~~~l~~ 54 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKKPE---STIHFRIKK 54 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 445677778764 7899999999999988 767666553
No 85
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=89.17 E-value=0.2 Score=30.50 Aligned_cols=36 Identities=11% Similarity=0.320 Sum_probs=27.5
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~~~---~tvs~~l~~ 70 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGCVP---SNMTTMIQR 70 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSSCC---TTHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCh---hHHHHHHHH
Confidence 44556667653 7899999999999998 667777653
No 86
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=89.10 E-value=0.23 Score=31.47 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=30.9
Q ss_pred HHHhCchHHHHhCC-CCCCHHHHHHhc-----CCCCCChhhHHHHHhcC
Q 041968 45 AVELGIPDVIHKHG-QPMTLSQIASAL-----DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 45 aveLgI~d~L~~~~-gp~S~~ELA~~~-----~~~~~~~~~L~RlLR~L 87 (87)
-.+.-|.+.|.+.+ ++.|+.||.+.+ ++++ ..++|.|+.|
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~---aTVYR~L~~L 63 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGL---ATVYRVLTQF 63 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCH---HHHHHHHHHH
Confidence 34556888888766 899999999998 4555 8899998764
No 87
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.05 E-value=0.21 Score=30.65 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=27.5
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|...+++.|..|||+.+++++ ..+.|+++-
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~s~---~~vs~~l~~ 75 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGVEG---PTLARLLDG 75 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCCh---hhHHHHHHH
Confidence 3445556623358999999999999998 777777653
No 88
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=89.02 E-value=0.23 Score=32.76 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=28.9
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|.+.|.++ +..|..|||+.+|+++ ..+.|-++-
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~---~tv~~rl~~ 64 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGLAE---STIHERIRK 64 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 456677778764 7899999999999988 766666553
No 89
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.84 E-value=0.21 Score=33.31 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.5
Q ss_pred HHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 52 DVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 52 d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+.+.+.|.|.|..|||+.+|+++ ..+.|.|+.|
T Consensus 16 ~~~~~~g~~~s~~eia~~lgl~~---~tv~~~l~~L 48 (196)
T 3k2z_A 16 EFIEKNGYPPSVREIARRFRITP---RGALLHLIAL 48 (196)
T ss_dssp HHHHHHSSCCCHHHHHHHHTSCH---HHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHcCCCc---HHHHHHHHHH
Confidence 34555567999999999999987 6688877643
No 90
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=88.77 E-value=0.12 Score=33.70 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 39 SMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..+|.--..+.|...|. .+|.|+.|||+.+|+++ ..+.+-|+.|
T Consensus 52 l~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~---stvs~hL~~L 95 (151)
T 3f6v_A 52 LEVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASR---SAISQHLRVL 95 (151)
T ss_dssp HHHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCH---HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 34455556778888887 37899999999999998 7788777654
No 91
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=88.61 E-value=0.24 Score=30.60 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=28.7
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~ 77 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGLDK---AAVSRTVKK 77 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 345566667764 6999999999999999 778877754
No 92
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=88.59 E-value=1 Score=28.52 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHhCchHHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... ++++|..|||+.+++++ ..+.|+++-
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~---~tvs~~l~~ 85 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRA---PDITRLIDR 85 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---C---THHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCCh---hhHHHHHHH
Confidence 345556667765 37999999999999999 777777653
No 93
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=88.58 E-value=0.23 Score=30.23 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=28.2
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~s~---~tvs~~l~~ 66 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHVDK---GTIARTLRR 66 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 44456667764 7899999999999998 778887764
No 94
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=88.19 E-value=0.24 Score=30.20 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=28.7
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.++.|+..|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~is~---~~vs~~l~~ 68 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQIDR---AAVTRHLKL 68 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 344566677754 6899999999999998 778887764
No 95
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.07 E-value=0.22 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=28.1
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~s~---~tvs~~l~~ 70 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGVAK---STVTGLVKR 70 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCc---hhHHHHHHH
Confidence 44556667653 7899999999999998 778887764
No 96
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=87.92 E-value=0.36 Score=30.56 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=28.0
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~ 83 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFIKP---QSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCG---GGHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 44466667764 6899999999999999 777777653
No 97
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=87.82 E-value=0.27 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 57 HGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 57 ~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+++.|..|||+.+++++ ..+.|+++.
T Consensus 28 ~~~~~s~~ela~~l~is~---~tv~~~l~~ 54 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAP---SSVFEEVSH 54 (139)
T ss_dssp TTSCBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred cCCCcCHHHHHHHhCCCh---HHHHHHHHH
Confidence 358899999999999998 888887764
No 98
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=87.70 E-value=0.29 Score=32.56 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=31.2
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.--...|.+.|.+.++++|..|||+.+|++. ..++|=++.
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~---~Ti~rdi~~ 59 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSVSR---QVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHCcCH---HHHHHHHHH
Confidence 3455678888886567899999999999988 777775543
No 99
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=87.59 E-value=0.25 Score=30.86 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=27.6
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|.. .+++|..|||+.+++++ ..+.|+++-
T Consensus 45 ~~~iL~~l~~-~~~~t~~ela~~l~i~~---~tvs~~l~~ 80 (155)
T 3cdh_A 45 EWRVLACLVD-NDAMMITRLAKLSLMEQ---SRMTRIVDQ 80 (155)
T ss_dssp HHHHHHHHSS-CSCBCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHH-CCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 3445556664 37899999999999998 778887764
No 100
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=87.42 E-value=0.22 Score=30.96 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=21.4
Q ss_pred hCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 48 LGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 48 LgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
..|...|...+ +++|..|||+.+++++ ..+.|+++-
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~---~~vs~~l~~ 80 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGRRG---ASITSMLQG 80 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCCCh---hHHHHHHHH
Confidence 34555666543 7999999999999998 667666653
No 101
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=87.35 E-value=0.33 Score=30.42 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=28.1
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|.. .++.|..|||+.+++++ ..+.|+++-
T Consensus 51 ~~~iL~~l~~-~~~~t~~ela~~l~is~---~tvs~~l~~ 86 (162)
T 2fa5_A 51 EWRVITILAL-YPGSSASEVSDRTAMDK---VAVSRAVAR 86 (162)
T ss_dssp HHHHHHHHHH-STTCCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 4445666776 47999999999999998 778777764
No 102
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=87.09 E-value=0.44 Score=31.38 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 39 SMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..+|++.+.|... .++++|..|||+.+++++ ..+.++|+.|
T Consensus 12 ~yAlr~l~~La~~-----~~~~~s~~~IA~~~~is~---~~l~kil~~L 52 (162)
T 3k69_A 12 SVAVHSILYLDAH-----RDSKVASRELAQSLHLNP---VMIRNILSVL 52 (162)
T ss_dssp HHHHHHHHHHHTT-----TTSCBCHHHHHHHHTSCG---GGTHHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 4566666665432 247899999999999999 8899988754
No 103
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=87.03 E-value=0.28 Score=30.30 Aligned_cols=36 Identities=6% Similarity=0.105 Sum_probs=27.8
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~ 79 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYLAC---STTTDLVDR 79 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCc---hhHHHHHHH
Confidence 44455667654 6899999999999998 778777764
No 104
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=86.96 E-value=0.43 Score=32.21 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-..+..|...|. .+++|..|||+.+|+++ ..+.|.++.
T Consensus 19 d~~~~~IL~~L~--~~~~s~~eLA~~lglS~---stv~~~l~~ 56 (192)
T 1uly_A 19 EDTRRKILKLLR--NKEMTISQLSEILGKTP---QTIYHHIEK 56 (192)
T ss_dssp SHHHHHHHHHHT--TCCBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CHHHHHHHHHHH--cCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 345667888887 37999999999999988 777776654
No 105
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=86.89 E-value=0.29 Score=30.21 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=28.7
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~ 68 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSLPK---QTVSGVCKT 68 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 345566667654 6799999999999999 778887754
No 106
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=86.85 E-value=0.25 Score=31.76 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.1
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|...++++|..|||+.+++++ ..+.|+++-
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~---~tvs~~l~~ 91 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQ---PSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCH---hhHHHHHHH
Confidence 34555666776457899999999999998 777777653
No 107
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=86.51 E-value=0.33 Score=30.07 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=28.9
Q ss_pred HhCchHHHHhCC---CCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 47 ELGIPDVIHKHG---QPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 47 eLgI~d~L~~~~---gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+-.|++.|-++. ...|..|||+.+++.+ ..+.|+.|-|
T Consensus 23 e~~ia~yil~~~~~~~~~si~elA~~~~vS~---aTv~Rf~kkl 63 (111)
T 2o3f_A 23 ERKLADYILAHPHXAIESTVNEISALANSSD---AAVIRLCXSL 63 (111)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHHHHHTTCCH---HHHHHHHHHT
T ss_pred HHHHHHHHHHChHHHHhcCHHHHHHHHCCCH---HHHHHHHHHc
Confidence 445666655432 4679999999999999 8899998754
No 108
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=86.51 E-value=0.29 Score=28.75 Aligned_cols=36 Identities=3% Similarity=0.060 Sum_probs=27.6
Q ss_pred HhCchHHHHhCCCCCCHHHH----HHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQI----ASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~EL----A~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|+..|.+ .++.|..|| |+.+++++ ..+.|+++-
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~is~---~tvs~~l~~ 49 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPMST---ATFYDAKKF 49 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCCCH---HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCCCH---HHHHHHHHH
Confidence 3455666665 378999999 89999998 888887764
No 109
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.31 E-value=0.37 Score=29.58 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... + .|..|||+.+++++ ..+.|+++-
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~s~---~tvs~~l~~ 74 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNVSQ---AAVTKAIKS 74 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCCCH---HHHHHHHHH
Confidence 455566667753 4 99999999999998 777777754
No 110
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=86.24 E-value=0.32 Score=29.59 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=27.5
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~~~---~tvs~~l~~ 71 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSVDL---GALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCCCh---HHHHHHHHH
Confidence 44455566653 6899999999999998 778777754
No 111
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=86.23 E-value=0.28 Score=30.13 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=27.7
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~s~---~~vs~~l~~ 66 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKVDR---TTAARAIKR 66 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCCCH---hHHHHHHHH
Confidence 34455667664 6899999999999998 778777754
No 112
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=86.23 E-value=0.27 Score=30.57 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=27.9
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~ 78 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLIITG---SSAAANVDG 78 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 44455567664 7899999999999998 778777754
No 113
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=86.21 E-value=0.63 Score=27.75 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+.|+++||+.+|+++ ..|.|+++
T Consensus 17 ~~~~~~~lA~~~~~s~---~~l~r~fk 40 (108)
T 3mn2_A 17 RPITIEKLTALTGISS---RGIFKAFQ 40 (108)
T ss_dssp SCCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCCHHHHHHHHCCCH---HHHHHHHH
Confidence 7899999999999999 88998876
No 114
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.01 E-value=0.36 Score=30.21 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.++.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~is~---~tvs~~l~~ 81 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLSTTK---SNVTNVVDS 81 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 455667777764 6899999999999988 778877764
No 115
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.00 E-value=0.26 Score=30.06 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~s~---~~vs~~l~~ 73 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACILR---PSMTGVLAR 73 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH---hHHHHHHHH
Confidence 345566667654 6899999999999998 778777754
No 116
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=85.75 E-value=0.24 Score=30.55 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~---~~vs~~l~~ 74 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDT---PTVNRIVDV 74 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCH---hhHHHHHHH
Confidence 344556667654 8999999999999999 778777653
No 117
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=85.70 E-value=0.34 Score=29.70 Aligned_cols=37 Identities=8% Similarity=0.338 Sum_probs=27.9
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 38 ~~~~iL~~l~~~-~~~~~~ela~~l~~~~---~tvs~~l~~ 74 (142)
T 2bv6_A 38 PQFLVLTILWDE-SPVNVKKVVTELALDT---GTVSPLLKR 74 (142)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTCCT---TTHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCh---hhHHHHHHH
Confidence 344556667664 6899999999999998 667777653
No 118
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=85.67 E-value=0.21 Score=28.64 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCC----CCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDI----QKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~----~~~~~~~L~RlLR~ 86 (87)
.+..|.+.|.+ .++.|+.||++.++. ++ ..+.|+|+-
T Consensus 10 ~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~---~Tv~~~l~r 50 (82)
T 1p6r_A 10 AELEVMKVIWK-HSSINTNEVIKELSKTSTWSP---KTIQTMLLR 50 (82)
T ss_dssp HHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccH---HHHHHHHHH
Confidence 34566777776 479999999999974 44 677777754
No 119
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=85.63 E-value=0.81 Score=27.53 Aligned_cols=31 Identities=16% Similarity=0.483 Sum_probs=25.0
Q ss_pred HHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 52 DVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 52 d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+.|.++ ..+.|+.+||+.+|+++ ..|.|+++
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~---~~l~r~fk 45 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSR---RQLERLFK 45 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCH---HHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 445443 37899999999999999 88998876
No 120
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=85.59 E-value=0.31 Score=30.62 Aligned_cols=37 Identities=3% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.++.|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 53 ~~~~iL~~l~~~-~~~t~~ela~~l~is~---~tvs~~l~~ 89 (162)
T 3cjn_A 53 AKMRALAILSAK-DGLPIGTLGIFAVVEQ---STLSRALDG 89 (162)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCh---hHHHHHHHH
Confidence 345566667764 7899999999999998 778887764
No 121
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=85.55 E-value=0.44 Score=29.61 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+++.|..|||+.+++++ ..+.|+++.
T Consensus 20 ~~~~~~~ela~~l~vs~---~tvs~~l~~ 45 (142)
T 1on2_A 20 KGYARVSDIAEALAVHP---SSVTKMVQK 45 (142)
T ss_dssp HSSCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 37899999999999999 888887764
No 122
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=85.50 E-value=0.25 Score=32.00 Aligned_cols=36 Identities=6% Similarity=0.115 Sum_probs=25.5
Q ss_pred HhCchHHHHhCCCC--CCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 47 ELGIPDVIHKHGQP--MTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 47 eLgI~d~L~~~~gp--~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
++.|...|...++| +|..|||+.+++++ ..+.|+++
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is~---~tvs~~l~ 108 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAISG---PSTSNRIV 108 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCS---GGGSSHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCCH---HHHHHHHH
Confidence 44566667765544 99999999999988 55555443
No 123
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=85.34 E-value=0.38 Score=33.78 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.4
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++.|...|.+. +++|..|||+.++.++ ..+.|.++-|
T Consensus 153 ~~~~IL~~L~~~-~~~s~~eLA~~lglsk---sTv~r~L~~L 190 (244)
T 2wte_A 153 EEMKLLNVLYET-KGTGITELAKMLDKSE---KTLINKIAEL 190 (244)
T ss_dssp HHHHHHHHHHHH-TCBCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 345566666653 6899999999999999 8888887643
No 124
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=85.26 E-value=0.41 Score=30.57 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=31.8
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhcC-----CCCCChhhHHHHHhcC
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASALD-----IQKNKAHCIQRLMRIL 87 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~~-----~~~~~~~~L~RlLR~L 87 (87)
+..+.-|.+.|.+.+++.|+.||...+. ++. ..++|.|..|
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~---aTVYR~L~~L 58 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGL---TTVYRTLQSL 58 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH---HHHHHHHHHH
Confidence 3456678888887668999999999984 444 8899998754
No 125
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=85.22 E-value=3.1 Score=26.32 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=28.7
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 46 ~~~~iL~~L~~~-~~~t~~eLa~~l~is~---~tvs~~l~~ 82 (168)
T 2nyx_A 46 PQFRTLVILSNH-GPINLATLATLLGVQP---SATGRMVDR 82 (168)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 345566667654 6899999999999998 778877754
No 126
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=84.95 E-value=0.35 Score=30.09 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=28.2
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~s~---~tvs~~l~~ 84 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYLDS---ATLTPLLKR 84 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCCCc---ccHHHHHHH
Confidence 44566667664 7899999999999998 778877764
No 127
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=84.78 E-value=0.4 Score=29.66 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=29.1
Q ss_pred HhCchHHHHhCC---CCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 47 ELGIPDVIHKHG---QPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 47 eLgI~d~L~~~~---gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
+-.|++.|-++. ...|..|||+.+++++ ..+.|+.|.|
T Consensus 19 e~~ia~yil~~~~~~~~~si~elA~~~~vS~---aTv~Rf~kkL 59 (107)
T 3iwf_A 19 EKKIAQFILNYPHKVVNMTSQEIANQLETSS---TSIIRLSKKV 59 (107)
T ss_dssp HHHHHHHHHHCHHHHTTCCHHHHHHHHTSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHCCHHHHHHHHCCCH---HHHHHHHHHh
Confidence 445666665433 5789999999999999 8899988753
No 128
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=84.60 E-value=0.81 Score=27.30 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+.|+.+||+.+|+++ ..|.|+++
T Consensus 20 ~~~~~~~lA~~~~~S~---~~l~r~fk 43 (108)
T 3oou_A 20 EGMSLKTLGNDFHINA---VYLGQLFQ 43 (108)
T ss_dssp SCCCHHHHHHHHTSCH---HHHHHHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 6899999999999999 88999876
No 129
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=84.39 E-value=0.98 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=24.0
Q ss_pred HHHHhCCCCCCHHHHHHhc-----CCCCCChhhHHHHHh
Q 041968 52 DVIHKHGQPMTLSQIASAL-----DIQKNKAHCIQRLMR 85 (87)
Q Consensus 52 d~L~~~~gp~S~~ELA~~~-----~~~~~~~~~L~RlLR 85 (87)
..+.. +++.|+.||++.+ +++. ..++|-|.
T Consensus 12 ~ll~~-~~~~t~~el~~~l~~~~~~vs~---~Tv~R~L~ 46 (64)
T 2p5k_A 12 EIITS-NEIETQDELVDMLKQDGYKVTQ---ATVSRDIK 46 (64)
T ss_dssp HHHHH-SCCCSHHHHHHHHHHTTCCCCH---HHHHHHHH
T ss_pred HHHHc-CCCCCHHHHHHHHHHhCCCcCH---HHHHHHHH
Confidence 34444 4799999999999 8887 88998775
No 130
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=84.37 E-value=0.74 Score=29.37 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 38 NSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 38 ~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
...+|++.+.|. ...+. |+.|||+.+++++ ..|.++|+.|
T Consensus 8 ~~yAl~~L~~La------~~~~~-s~~~IA~~~~i~~---~~l~kIl~~L 47 (145)
T 1xd7_A 8 LAVAIHILSLIS------MDEKT-SSEIIADSVNTNP---VVVRRMISLL 47 (145)
T ss_dssp HHHHHHHHHHHH------TCSCC-CHHHHHHHHTSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHH------hCCCC-CHHHHHHHHCcCH---HHHHHHHHHH
Confidence 345666666553 22235 9999999999999 9999998754
No 131
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=84.17 E-value=1.3 Score=28.50 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=31.0
Q ss_pred HHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 43 KCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 43 ~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..+-++.|+..|.+ | .|-.|||+.+|+.+ ..+.|+-|.|
T Consensus 61 aLs~R~eV~klL~~--G-~syreIA~~~g~S~---aTIsRv~r~L 99 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ--G-YTYATIEQESGAST---ATISRVKRSL 99 (119)
T ss_dssp HHHHHHHHHHHHHH--T-CCHHHHHHHHCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--C-CCHHHHHHHHCCCH---HHHHHHHHHH
Confidence 34555888888885 3 99999999999999 7788876653
No 132
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=84.10 E-value=0.33 Score=31.40 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=31.1
Q ss_pred HHHhCchHHHHhCC-CCCCHHHHHHhc-----CCCCCChhhHHHHHhcC
Q 041968 45 AVELGIPDVIHKHG-QPMTLSQIASAL-----DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 45 aveLgI~d~L~~~~-gp~S~~ELA~~~-----~~~~~~~~~L~RlLR~L 87 (87)
-.+.-|.+.|.+.+ ++.|+.||.+.+ ++++ ..+||.|+.|
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~---aTVYR~L~~L 62 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGL---ATVYRVLNQF 62 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCH---HHHHHHHHHH
Confidence 34556788887666 799999999998 3455 8899998764
No 133
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=84.09 E-value=1.2 Score=27.10 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=25.2
Q ss_pred hHHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 51 PDVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 51 ~d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+.|.++ ..+.|+.+||+.+|+++ ..|.|+++
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~---~~l~r~fk 45 (120)
T 3mkl_A 13 CTVINNNIAHEWTLARIASELLMSP---SLLKKKLR 45 (120)
T ss_dssp HHHHHTSTTSCCCHHHHHHHTTCCH---HHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 3444433 36899999999999999 88999875
No 134
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=83.99 E-value=0.57 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=24.2
Q ss_pred hHHHHhCCCCCCHHHHHHhc-CCCCCChhhHHHHHhc
Q 041968 51 PDVIHKHGQPMTLSQIASAL-DIQKNKAHCIQRLMRI 86 (87)
Q Consensus 51 ~d~L~~~~gp~S~~ELA~~~-~~~~~~~~~L~RlLR~ 86 (87)
...|. .++.+..||++.+ ++++ ..+.|.|+-
T Consensus 20 L~~L~--~~~~~~~eLa~~l~~is~---~tls~~L~~ 51 (107)
T 2hzt_A 20 LXHLT--HGKKRTSELKRLMPNITQ---KMLTQQLRE 51 (107)
T ss_dssp HHHHT--TCCBCHHHHHHHCTTSCH---HHHHHHHHH
T ss_pred HHHHH--hCCCCHHHHHHHhcCCCH---HHHHHHHHH
Confidence 33444 3789999999999 9998 778777764
No 135
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=83.89 E-value=0.63 Score=28.27 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.3
Q ss_pred hHHHHhCCCCCCHHHHHHhc-CCCCCChhhHHHHHhc
Q 041968 51 PDVIHKHGQPMTLSQIASAL-DIQKNKAHCIQRLMRI 86 (87)
Q Consensus 51 ~d~L~~~~gp~S~~ELA~~~-~~~~~~~~~L~RlLR~ 86 (87)
...|.+ ++.+..|||+.+ ++++ ..+.|.++-
T Consensus 28 L~~L~~--~~~~~~eLa~~l~~is~---~tvs~~L~~ 59 (112)
T 1z7u_A 28 MDELFQ--GTKRNGELMRALDGITQ---RVLTDRLRE 59 (112)
T ss_dssp HHHHHH--SCBCHHHHHHHSTTCCH---HHHHHHHHH
T ss_pred HHHHHh--CCCCHHHHHHHhccCCH---HHHHHHHHH
Confidence 334543 689999999999 9998 888887764
No 136
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=83.88 E-value=0.37 Score=29.66 Aligned_cols=36 Identities=8% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+..|...|... ++ |..|||..+++++ ..+.|+++-
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~~~---~tvs~~l~~ 73 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFVTQ---SAITAAVDK 73 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCCCh---hHHHHHHHH
Confidence 344566667765 44 9999999999999 778777754
No 137
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.88 E-value=3.1 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=27.3
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 40 ~~iL~~l~~~-~~~t~~ela~~l~~s~---~tvs~~l~~ 74 (155)
T 1s3j_A 40 LFVLASLKKH-GSLKVSEIAERMEVKP---SAVTLMADR 74 (155)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 3455666653 6899999999999998 778887764
No 138
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=83.58 E-value=0.42 Score=30.02 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=28.2
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcC----CCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALD----IQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~----~~~~~~~~L~RlLR~ 86 (87)
.+..|...|.+..++.|..||++.++ +++ ..+.|++.-
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~---~Tvt~~l~r 51 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAY---TTVMAVLQR 51 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCH---HHHHHHHHH
Confidence 35566777876347999999999998 455 777777753
No 139
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=83.51 E-value=0.43 Score=29.74 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=27.6
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 43 q~~iL~~l~~~-~~~~~~eLa~~l~~~~---~~vs~~l~~ 78 (149)
T 4hbl_A 43 QYLVMLTLWEE-NPQTLNSIGRHLDLSS---NTLTPMLKR 78 (149)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 44445566654 8999999999999999 777777653
No 140
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=82.85 E-value=1.1 Score=22.58 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.7
Q ss_pred CCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 61 MTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.|..|||..+|++. ..++|.++
T Consensus 22 ~s~~~ia~~lgvs~---~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGV---STLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCH---HHHHHHSC
T ss_pred CCHHHHHHHHCCCH---HHHHHHHH
Confidence 79999999999998 88888775
No 141
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=82.79 E-value=1.5 Score=26.05 Aligned_cols=24 Identities=13% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+.|+++||+.+|+++ ..|.|+++
T Consensus 19 ~~~~~~~lA~~~~~S~---~~l~r~fk 42 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSP---SRLSHLFR 42 (107)
T ss_dssp SSCCHHHHHHHTTSCH---HHHHHHHH
T ss_pred CCCCHHHHHHHHCCCH---HHHHHHHH
Confidence 6899999999999999 88998876
No 142
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=82.72 E-value=0.32 Score=29.92 Aligned_cols=37 Identities=8% Similarity=0.216 Sum_probs=28.5
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.++.|...|... ++.|..|||+.+++++ ..+.|+++-
T Consensus 41 ~~~~iL~~l~~~-~~~~~~~la~~l~~~~---~tvs~~l~~ 77 (147)
T 1z91_A 41 PQYLALLLLWEH-ETLTVKKMGEQLYLDS---GTLTPMLKR 77 (147)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHTTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCc---CcHHHHHHH
Confidence 345556667654 6899999999999998 778887764
No 143
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=82.67 E-value=1.1 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.595 Sum_probs=20.2
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..|||+.+|+++ ..++|.++
T Consensus 21 g~s~~~IA~~lgis~---~Tv~~~~~ 43 (51)
T 1tc3_C 21 NVSLHEMSRKISRSR---HCIRVYLK 43 (51)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHh
Confidence 379999999999998 88888875
No 144
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=82.17 E-value=0.42 Score=30.08 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=25.8
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 55 vL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~ 87 (159)
T 3s2w_A 55 FLMRLYRE-DGINQESLSDYLKIDK---GTTARAIQK 87 (159)
T ss_dssp HHHHHHHS-CSEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHH
Confidence 44556654 7899999999999999 777777653
No 145
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=81.90 E-value=0.66 Score=30.38 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=30.0
Q ss_pred HHHhCchHHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 45 AVELGIPDVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 45 aveLgI~d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
..+..|...|... ++++|..|||+.+++++ ..+.|+++-
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~---~tvs~~l~~ 80 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGTSK---QNINRLVAN 80 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 3455666677753 37999999999999998 778777754
No 146
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=81.84 E-value=0.25 Score=29.18 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=21.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+++|..|||+.+++++ ..+.|++.-
T Consensus 29 ~~~t~~eLa~~l~i~~---~tvs~~l~~ 53 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPH---SYVWLIIKK 53 (95)
T ss_dssp CCEEHHHHHHHSSSCH---HHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCH---HHHHHHHHH
Confidence 3499999999999999 888887754
No 147
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.74 E-value=0.54 Score=34.19 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 37 INSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 37 ~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-.+.++|..-+..|.+.|. + +++|-.|||+.+|+.+ ..+.++++-
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gls~---~tv~~~v~~ 56 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K-SPVSRVELAEELGLTK---TTVGEIAKI 56 (380)
T ss_dssp ----------CCCSHHHHH-H-SCBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCcCH---HHHHHHHHH
Confidence 3477888888889999998 4 8999999999999998 777777653
No 148
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=81.58 E-value=0.74 Score=31.33 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=29.1
Q ss_pred HHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 45 AVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 45 aveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
-..+.|...|.+ +|.|..|||+.+|+++ ..+.+.|+.|
T Consensus 15 ~~rl~IL~~L~~--~~~s~~eLa~~l~is~---stvs~hLk~L 52 (202)
T 2p4w_A 15 ETRRRILFLLTK--RPYFVSELSRELGVGQ---KAVLEHLRIL 52 (202)
T ss_dssp HHHHHHHHHHHH--SCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 345556666653 7999999999999998 8888877643
No 149
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=81.50 E-value=0.3 Score=30.15 Aligned_cols=34 Identities=6% Similarity=0.187 Sum_probs=25.8
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.|...|.. .++.|..|||+.+++++ ..+.|+++-
T Consensus 40 ~vL~~l~~-~~~~t~~eLa~~l~~~~---~tvs~~l~~ 73 (140)
T 3hsr_A 40 IVLMAIEN-DEKLNIKKLGERVFLDS---GTLTPLLKK 73 (140)
T ss_dssp HHHHHSCT-TCEEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCCCh---hhHHHHHHH
Confidence 34444554 37999999999999999 778777653
No 150
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=81.32 E-value=1.1 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=25.0
Q ss_pred hHHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 51 PDVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 51 ~d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+.|.++ ..+.|+++||+.+|+++ ..|.|+++
T Consensus 17 ~~~i~~~~~~~~sl~~lA~~~~~S~---~~l~r~fk 49 (129)
T 1bl0_A 17 LDWIEDNLESPLSLEKVSERSGYSK---WHLQRMFK 49 (129)
T ss_dssp HHHHHTTTTSCCCCHHHHHHSSSCH---HHHHHHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 3444433 36799999999999999 88998876
No 151
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=81.24 E-value=0.95 Score=28.72 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.5
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+.-.|.+.+++.+..|||+.+++++ ..+.|++.
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~~---~tvs~~v~ 68 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIEQ---PSLVRTLD 68 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSCH---HHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcCH---HHHHHHHH
Confidence 4445665567788899999999999 77777765
No 152
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=81.11 E-value=1.2 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.7
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
++.|+.+||+.+|+++ ..|.|+++
T Consensus 18 ~~~~~~~lA~~~~~S~---~~l~r~fk 41 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSS---GYLSIMFK 41 (103)
T ss_dssp TTCCHHHHHHHTTCCH---HHHHHHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 5899999999999999 88988875
No 153
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=80.82 E-value=0.6 Score=28.16 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=26.8
Q ss_pred CchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 49 GIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 49 gI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.|...|..++ ..++..||+..++.+. ..+.|+|+.|
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l~~---~tvt~iLk~L 60 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNLPL---TEINKILKNL 60 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCCCH---HHHHHHHHHH
Confidence 3455555432 4799999999999998 8888887643
No 154
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=79.80 E-value=0.97 Score=27.57 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCCCC--HHHHHHhc-CCCCCChhhHHHHHhcC
Q 041968 58 GQPMT--LSQIASAL-DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 58 ~gp~S--~~ELA~~~-~~~~~~~~~L~RlLR~L 87 (87)
.|+.+ ..||++.+ |+++ ..+.|.|+.|
T Consensus 38 ~g~~~~~~~eL~~~l~gis~---~~ls~~L~~L 67 (111)
T 3df8_A 38 NGSTRQNFNDIRSSIPGISS---TILSRRIKDL 67 (111)
T ss_dssp SSSSCBCHHHHHHTSTTCCH---HHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHccCCCH---HHHHHHHHHH
Confidence 36777 99999999 8998 7788877643
No 155
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=79.00 E-value=0.62 Score=33.84 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=28.2
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|++..| + +|.|+.|||..+|.++ ..+.++|+.|
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~~~---~~v~~~L~~l 79 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEEPL---PLVVAILESL 79 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTSCH---HHHHHHHHHH
T ss_pred HHHHHh-c--CCCCHHHHHHHhCCCh---HHHHHHHHHH
Confidence 678888 3 6899999999999998 8899888753
No 156
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=78.33 E-value=1.7 Score=31.68 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 42 LKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 42 L~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+|..-+..|.+.|.++ +++|-.|||+.+|+.+ ..+.++++-
T Consensus 13 ~r~~n~~~il~~l~~~-~~~sr~~la~~~~ls~---~tv~~~v~~ 53 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL-GPVSRIDLSRLAQLAP---ASITKIVHE 53 (406)
T ss_dssp HHHHHHHHHHHHHHSS-CSCCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 3444445578888864 8999999999999998 777777653
No 157
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=77.98 E-value=0.65 Score=30.89 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=27.3
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcC-CCCCChhhHHHHHhc
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALD-IQKNKAHCIQRLMRI 86 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~-~~~~~~~~L~RlLR~ 86 (87)
+.+.|...|. .+|.|+.||++.++ ++. ..+.+-||.
T Consensus 24 ~Rl~il~~L~--~~~~~~~~l~~~l~~~~~---~~~s~Hl~~ 60 (182)
T 4g6q_A 24 LRWRITQLLI--GRSLTTRELAELLPDVAT---TTLYRQVGI 60 (182)
T ss_dssp HHHHHHHHTT--TSCEEHHHHHHHCTTBCH---HHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHhcCCCH---HHHHHHHHH
Confidence 5677888886 48999999999996 666 556665554
No 158
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=77.69 E-value=0.5 Score=28.52 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=25.8
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcC----CCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALD----IQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~----~~~~~~~~L~RlLR~ 86 (87)
+..|...|.. .++.|..|||+.++ +++ ..+.|++.-
T Consensus 12 ~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~---~tv~~~l~~ 51 (123)
T 1okr_A 12 EWEVMNIIWM-KKYASANNIIEEIQMQKDWSP---KTIRTLITR 51 (123)
T ss_dssp HHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCH---HHHHHHHHH
T ss_pred HHHHHHHHHh-CCCcCHHHHHHHHhccCCCcH---hhHHHHHHH
Confidence 3445555655 37899999999998 446 777777753
No 159
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=77.26 E-value=0.61 Score=28.67 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=27.5
Q ss_pred HhCchHHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|... +++.|..|||+.+++++ ..+.|+++-
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~---~tvs~~l~~ 76 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQ---PQVVKAVKI 76 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHH---HHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 34455556653 27899999999999988 777777653
No 160
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=76.99 E-value=1.8 Score=27.17 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=24.7
Q ss_pred hHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 51 PDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 51 ~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
...|.. +++.|..+||+.+++++ ..+.|.++.
T Consensus 46 ~~~l~~-~~~~~~~~la~~l~vs~---~tvs~~l~~ 77 (155)
T 2h09_A 46 SDLIRE-VGEARQVDMAARLGVSQ---PTVAKMLKR 77 (155)
T ss_dssp HHHHHH-HSCCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHh-CCCcCHHHHHHHhCcCH---HHHHHHHHH
Confidence 335554 36789999999999998 778877764
No 161
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=76.95 E-value=0.96 Score=28.60 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=19.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+++|..|||+.+++++ ..+.|++.-
T Consensus 51 ~~~t~~eLa~~l~~~~---~tvsr~v~~ 75 (148)
T 4fx0_A 51 IDLTMSELAARIGVER---TTLTRNLEV 75 (148)
T ss_dssp ---CHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCh---hhHHHHHHH
Confidence 5799999999999999 778877653
No 162
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=76.82 E-value=1.6 Score=27.01 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+.|+.+||..+|.++ ..+.|+.+
T Consensus 91 ~~~~sl~~lA~~~g~S~---~~f~r~Fk 115 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSP---FHLHRLFK 115 (133)
T ss_dssp SSCCCHHHHHHHHTSCH---HHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 47899999999999998 88988875
No 163
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=76.79 E-value=2.3 Score=25.19 Aligned_cols=27 Identities=15% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCCC-CHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 58 GQPM-TLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 58 ~gp~-S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|..+ |..|||+.+|++. ..+.+.++.|
T Consensus 32 g~~lps~~eLa~~~~vSr---~tvr~al~~L 59 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAA---KTVSRALAVL 59 (102)
T ss_dssp TSBCCCHHHHHHHSSSCT---THHHHHTTTT
T ss_pred cCCCcCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 4566 9999999999988 8888887765
No 164
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=76.78 E-value=1.8 Score=27.26 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=30.9
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.+..+.|+..|.+ | .|-.||++.+|++. ..+.|+-|.|
T Consensus 45 laqR~~Ia~lL~~--G-~SyreIa~~tG~St---aTIsRv~r~L 82 (107)
T 3frw_A 45 LSQRFEVAKMLTD--K-RTYLDISEKTGAST---ATISRVNRSL 82 (107)
T ss_dssp HHHHHHHHHHHHT--T-CCHHHHHHHHCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--C-CCHHHHHHHHCccH---HHHHHHHHHH
Confidence 4567888998884 4 99999999999998 7788877653
No 165
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=76.58 E-value=1.7 Score=24.49 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 61 MTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+|..|||+.+|+.+ ..+.|+|.
T Consensus 1 ~T~~diA~~aGVS~---sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSR---TTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCH---HHHHHHHH
T ss_pred CCHHHHHHHHCcCH---HHHHHHHc
Confidence 36778888888887 77777764
No 166
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=76.44 E-value=1.4 Score=28.20 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=29.5
Q ss_pred HHHhCchHHHHhCCCCCCHHHHHHhcCC-CC-CChhhHHHHHhcC
Q 041968 45 AVELGIPDVIHKHGQPMTLSQIASALDI-QK-NKAHCIQRLMRIL 87 (87)
Q Consensus 45 aveLgI~d~L~~~~gp~S~~ELA~~~~~-~~-~~~~~L~RlLR~L 87 (87)
..+.-|.+.|.+.+ +.|+.||...+.- .| -+...+||.|..|
T Consensus 19 ~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L 62 (145)
T 3eyy_A 19 PQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELL 62 (145)
T ss_dssp HHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHH
Confidence 34566788887765 9999999998842 11 1338899998754
No 167
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=76.07 E-value=2.1 Score=25.91 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.7
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
|.+.|.+. + .|+.|||..+|+++ ..+.|.|.
T Consensus 12 I~~~l~~~-~-~ti~dlA~~~gVS~---~TVsR~L~ 42 (93)
T 2l0k_A 12 IGKYIVET-K-KTVRVIAKEFGVSK---STVHKDLT 42 (93)
T ss_dssp HHHHHHHH-C-CCHHHHHHHHTSCH---HHHHHHHT
T ss_pred HHHHHHHc-C-CCHHHHHHHHCCCH---HHHHHHHc
Confidence 55666543 3 89999999999998 88888875
No 168
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=75.67 E-value=2.2 Score=22.23 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.3
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..|||+.+|+++ ..++|.++
T Consensus 31 g~s~~eIA~~lgis~---~TV~~~l~ 53 (55)
T 2x48_A 31 GYTVQQIANALGVSE---RKVRRYLE 53 (55)
T ss_dssp TCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHH
Confidence 469999999999999 88888875
No 169
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=75.04 E-value=1 Score=30.22 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=27.5
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|...|... +++|..|||+.+++++ ..+.|+++-
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i~~---stvs~~l~~ 85 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVMHV---STAFNFSKK 85 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 34455566654 6899999999999998 778777754
No 170
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=74.88 E-value=1.7 Score=27.72 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|+.+..||++.+|+++ ..+.+.|+-
T Consensus 36 g~~~~~eLa~~lgis~---~tls~~L~~ 60 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAK---NILAARLRN 60 (146)
T ss_dssp TCCSHHHHHHHHCCCH---HHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 7899999999999998 778777764
No 171
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=74.68 E-value=2.5 Score=29.63 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=26.6
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-|...|++ |.|.|.++||..+|.+. +.+.++|..
T Consensus 26 ~llr~la~-Grpv~~~~LA~~~g~~~---~~v~~~L~~ 59 (220)
T 3f2g_A 26 PLLRELAK-GRPVSRTTLAGILDWPA---ERVAAVLEQ 59 (220)
T ss_dssp HHHHHHTT-TSCBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHhc-CCCCCHHHHHHHhCcCH---HHHHHHHHh
Confidence 34455774 79999999999999988 777777653
No 172
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=74.22 E-value=2 Score=31.71 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=33.5
Q ss_pred HHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 41 SLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 41 aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-+|..-+..|.+.|.++ +++|-.|||+.+|+.+ ..+.++++-
T Consensus 35 ~~r~~n~~~il~~l~~~-~~~sr~ela~~~gls~---~tv~~~v~~ 76 (429)
T 1z05_A 35 HIKQINAGRVYKLIDQK-GPISRIDLSKESELAP---ASITKITRE 76 (429)
T ss_dssp HHHHHHHHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 35666666788888874 8999999999999998 777777653
No 173
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=74.22 E-value=1.4 Score=24.99 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=29.8
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.|.|-|.++||-+.++..++..|+++ +-+..+||-
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV~k---deV~~~Lrr 48 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGVEK---QEVVKLLEA 48 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCCCH---HHHHHHHHH
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCCCH---HHHHHHHHH
Confidence 46677888889999999999999998 878887774
No 174
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=73.72 E-value=0.94 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=26.2
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCC----CCCChhhHHHHHh
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDI----QKNKAHCIQRLMR 85 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~----~~~~~~~L~RlLR 85 (87)
.+..|...|.+. +|.|..||++.++. ++ ..+.++++
T Consensus 11 ~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~---~Tvt~~l~ 50 (126)
T 1sd4_A 11 AEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSD---KTIRTLIT 50 (126)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCH---HHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCCh---hhHHHHHH
Confidence 345566777764 78999999999975 45 66766664
No 175
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=73.54 E-value=1.3 Score=26.57 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHhcC-CCCCChhhHHHHHhc
Q 041968 58 GQPMTLSQIASALD-IQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~S~~ELA~~~~-~~~~~~~~L~RlLR~ 86 (87)
.++.+..||++.++ +++ ..+.+.|+-
T Consensus 36 ~~~~~~~eL~~~l~gis~---~~ls~~L~~ 62 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISE---KMLIDELKF 62 (107)
T ss_dssp TSCEEHHHHHHHSTTCCH---HHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCH---HHHHHHHHH
Confidence 37899999999995 998 778887764
No 176
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=73.40 E-value=3.3 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=20.7
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 21 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 47 (188)
T 3qkx_A 21 MAREGLNQLSMLKLAKEANVAA---GTIYL 47 (188)
T ss_dssp HHHSCSTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHhcCcccCCHHHHHHHhCCCc---chHHH
Confidence 45555 6799999999999988 66665
No 177
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=73.29 E-value=0.73 Score=28.11 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=27.0
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCC-CChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQK-NKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~-~~~~~L~RlLR~ 86 (87)
+..|.+.|.+ .++.|+.||++.++.++ -+...+.|+|.-
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~r 76 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGR 76 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHH
Confidence 4456777776 37999999999998641 122667777653
No 178
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=73.00 E-value=0.89 Score=28.61 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++++|..|||+.+++++ ..+.|++.-
T Consensus 49 ~~~~t~~eLa~~l~~~~---~tvs~~v~~ 74 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHP---TSVTNTVDR 74 (147)
T ss_dssp GGEEEHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 37899999999999999 777777653
No 179
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=72.60 E-value=3.5 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 19 ~~~~G~~~~t~~~Ia~~agvs~---~t~Y~ 45 (191)
T 1sgm_A 19 SQLQGYHATGLNQIVKESGAPK---GSLYH 45 (191)
T ss_dssp HHHHCTTTCCHHHHHHHHCCCS---CHHHH
T ss_pred HHHcCccccCHHHHHHHHCCCc---hhHHH
Confidence 44445 6799999999999988 66665
No 180
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=71.77 E-value=3.8 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 53 VIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 53 ~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 21 l~~~~G~~~~tv~~Ia~~agvs~---~t~Y~ 48 (195)
T 3ppb_A 21 LFVSQGFHGTSTATIAREAGVAT---GTLFH 48 (195)
T ss_dssp HHHHTCSTTSCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhcCcccCCHHHHHHHhCCCh---hHHHH
Confidence 355555 7899999999999988 66655
No 181
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=71.06 E-value=4.5 Score=21.62 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=24.2
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.|++.+.+. | |..++|+.+|+.+ ..+.+.+|
T Consensus 5 ~l~~~~~~~-g--s~~~~A~~lgis~---~~vs~~~~ 35 (67)
T 2pij_A 5 PLSKYLEEH-G--TQSALAAALGVNQ---SAISQMVR 35 (67)
T ss_dssp EHHHHHHHT-C--CHHHHHHHHTSCH---HHHHHHHH
T ss_pred HHHHHHHHc-C--CHHHHHHHHCcCH---HHHHHHHc
Confidence 456666653 3 9999999999998 88888775
No 182
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=70.76 E-value=1.6 Score=25.88 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
++..|+.+||.++|+.. .-+.|+|
T Consensus 27 ~~~~Ta~~IAkkLg~sK---~~vNr~L 50 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINK---KKINQQL 50 (75)
T ss_dssp TCEECHHHHHHHTTCCH---HHHHHHH
T ss_pred CcchHHHHHHHHHCCCH---HHHHHHH
Confidence 35699999999999977 4455544
No 183
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=70.35 E-value=1.4 Score=27.68 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhc-CCCCCChhhHHHHHhcC
Q 041968 27 AQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASAL-DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 27 ~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~-~~~~~~~~~L~RlLR~L 87 (87)
..+++++.+.+...+| ..|. .++.+..||++.+ |+++ ..+.+.|+-|
T Consensus 26 ~~~l~~l~~~w~l~IL---------~~L~--~g~~~~~eLa~~l~gis~---~tls~~L~~L 73 (131)
T 1yyv_A 26 REVLKHVTSRWGVLIL---------VALR--DGTHRFSDLRRXMGGVSE---XMLAQSLQAL 73 (131)
T ss_dssp HHHHHHHHSHHHHHHH---------HHGG--GCCEEHHHHHHHSTTCCH---HHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHH---------HHHH--cCCCCHHHHHHHhccCCH---HHHHHHHHHH
Confidence 4445555555544333 2344 2789999999999 6998 8888877643
No 184
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=69.91 E-value=3.8 Score=25.57 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=24.7
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+|.+|.++ +.+.| ...|+.+||++.|+.+ ..+++
T Consensus 11 ~Il~aA~~l-----f~~~G~~~~t~~~IA~~agvs~---~tlY~ 46 (192)
T 2zcm_A 11 KIIDNAITL-----FSEKGYDGTTLDDISKSVNIKK---ASLYY 46 (192)
T ss_dssp HHHHHHHHH-----HHHHCTTTCCHHHHHHHTTCCH---HHHHH
T ss_pred HHHHHHHHH-----HHHcCcccCCHHHHHHHhCCCh---HHHHH
Confidence 455555442 44445 6799999999999988 66665
No 185
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=69.82 E-value=3 Score=27.20 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=31.8
Q ss_pred HHHHhCchHHHHhCCCCCCHHHHHHhcCCC---C-CChhhHHHHHhcC
Q 041968 44 CAVELGIPDVIHKHGQPMTLSQIASALDIQ---K-NKAHCIQRLMRIL 87 (87)
Q Consensus 44 aaveLgI~d~L~~~~gp~S~~ELA~~~~~~---~-~~~~~L~RlLR~L 87 (87)
+..+.-|.+.|.+.+++.|+.||...+.-. | -+...++|-|..|
T Consensus 32 T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L 79 (162)
T 4ets_A 32 TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLL 79 (162)
T ss_dssp CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 345677889998767999999999877321 1 1237899988754
No 186
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=69.24 E-value=2.1 Score=27.57 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=22.2
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++|-.+||+.+|+.+ ..+.|+++-
T Consensus 169 ~~t~~~lA~~lg~sr---~tvsR~l~~ 192 (220)
T 3dv8_A 169 KITHETIANHLGSHR---EVITRMLRY 192 (220)
T ss_dssp CCCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 889999999999999 999999874
No 187
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=69.04 E-value=2.6 Score=26.84 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhc-CCCCCChhhHHHHHhcC
Q 041968 27 AQVWNCAFNYINSMSLKCAVELGIPDVIHKHGQPMTLSQIASAL-DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 27 ~~l~~l~~g~~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~-~~~~~~~~~L~RlLR~L 87 (87)
..+++++.+-|...+|.. |. .|+.+..||++.+ |+++ ..|.+.|+-|
T Consensus 17 ~~~l~~lg~kW~l~IL~~---------L~--~g~~rf~eL~~~l~gIs~---~~Ls~~L~~L 64 (131)
T 4a5n_A 17 EFTLDVIGGKWKGILFYH---------MI--DGKKRFNEFRRICPSITQ---RMLTLQLREL 64 (131)
T ss_dssp HHHHHHHCSSSHHHHHHH---------HT--TSCBCHHHHHHHCTTSCH---HHHHHHHHHH
T ss_pred HHHHHHHcCcCHHHHHHH---------Hh--cCCcCHHHHHHHhcccCH---HHHHHHHHHH
Confidence 344555555555544432 33 3799999999999 8988 7788777643
No 188
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=68.95 E-value=2 Score=30.04 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 46 VELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 46 veLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+..|...|...+ +++|..|||+.+++++ ..+.|++.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~---~tvt~~v~ 196 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHHKY---PQTVRALN 196 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSSCH---HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCCCh---hhHHHHHH
Confidence 3444556676655 3699999999999999 77777664
No 189
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=68.94 E-value=1.8 Score=27.66 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++|-.+||+.+|+.+ ..+.|+++-
T Consensus 164 ~~t~~~lA~~lg~sr---~tvsR~l~~ 187 (207)
T 2oz6_A 164 KITRQEIGRIVGCSR---EMVGRVLKS 187 (207)
T ss_dssp ECCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred ccCHHHHHHHhCCCH---HHHHHHHHH
Confidence 689999999999999 999999874
No 190
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=68.57 E-value=0.55 Score=32.86 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 42 LKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 42 L~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|.--..+.|...|. .+|.|..|||+.+|+++ ..+.+.|+.|
T Consensus 9 L~~~~R~~IL~~L~--~g~~s~~ELa~~lglS~---stVs~hL~~L 49 (232)
T 2qlz_A 9 LGNKVRRDLLSHLT--CMECYFSLLSSKVSVSS---TAVAKHLKIM 49 (232)
T ss_dssp HTSHHHHHHHHHHT--TTTTCSSSSCTTCCCCH---HHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 33345666777787 37999999999999998 7777777643
No 191
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=68.03 E-value=2.3 Score=30.51 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=28.5
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..|.+.|.+ +++.|..|||+.+++++ ..++|-++.
T Consensus 7 ~~~Il~~L~~-~~~~s~~eLa~~l~vS~---~ti~r~l~~ 42 (321)
T 1bia_A 7 PLKLIALLAN-GEFHSGEQLGETLGMSR---AAINKHIQT 42 (321)
T ss_dssp HHHHHHHHTT-SSCBCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 3456777764 57999999999999998 888887664
No 192
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=67.98 E-value=4.4 Score=25.03 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.+ ..+++
T Consensus 15 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 41 (194)
T 3bqz_B 15 FIKNGYNATTTGEIVKLSESSK---GNLYY 41 (194)
T ss_dssp HHHHTTTTCCHHHHHHHTTCCH---HHHHH
T ss_pred HHHcCCccCCHHHHHHHhCCCc---hhHHH
Confidence 44445 7799999999999988 66654
No 193
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=67.91 E-value=3 Score=25.59 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=26.3
Q ss_pred hCchHHHHhCCCCCCHHHHHH-hcCCCCCChhhHHHHHhc
Q 041968 48 LGIPDVIHKHGQPMTLSQIAS-ALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~-~~~~~~~~~~~L~RlLR~ 86 (87)
..|.-.|++. ++.|+.+||+ ..+.+. ..+.|=++.
T Consensus 19 fsiL~~L~~~-~~~t~~~Lae~~l~~dr---stvsrnl~~ 54 (95)
T 1bja_A 19 ATILITIAKK-DFITAAEVREVHPDLGN---AVVNSNIGV 54 (95)
T ss_dssp HHHHHHHHHS-TTBCHHHHHHTCTTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHhcccH---HHHHHHHHH
Confidence 3444457775 5999999999 889888 777776554
No 194
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=67.86 E-value=2.3 Score=27.72 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=22.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-++|-.+||+.+|+.+ ..+.|+|+-
T Consensus 174 ~~~t~~~iA~~lg~sr---~tvsR~l~~ 198 (231)
T 3e97_A 174 LPLGTQDIMARTSSSR---ETVSRVLKR 198 (231)
T ss_dssp ECCCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred cCCCHHHHHHHhCCcH---HHHHHHHHH
Confidence 3789999999999999 999999874
No 195
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=67.54 E-value=4.4 Score=25.12 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=20.2
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 27 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 53 (203)
T 3f1b_A 27 FSDRGFHETSMDAIAAKAEISK---PMLYL 53 (203)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCH---HHHHH
T ss_pred HHHcCcccccHHHHHHHhCCch---HHHHH
Confidence 44444 6789999999999988 66665
No 196
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=67.53 E-value=2.4 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=22.5
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-++|-.+||+.+|+.+ +.+.|+++-
T Consensus 166 ~~~t~~~lA~~lg~sr---~tvsR~l~~ 190 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTR---QTVSVLLND 190 (220)
T ss_dssp CSSCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcH---HHHHHHHHH
Confidence 4789999999999999 999999874
No 197
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=67.53 E-value=5.2 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=21.0
Q ss_pred HHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 53 VIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 53 ~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 16 l~~~~G~~~~t~~~Ia~~agvs~---~t~Y~ 43 (185)
T 2yve_A 16 YIGEYSLETLSYDSLAEATGLSK---SGLIY 43 (185)
T ss_dssp HHHHSCSTTCCHHHHHHHHCCCH---HHHHH
T ss_pred HHHHcChhhccHHHHHHHhCCCh---HHHHH
Confidence 355555 7899999999999988 66655
No 198
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=67.52 E-value=4.6 Score=22.29 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=17.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
...|..|||..+|+++ ..+.+.
T Consensus 29 ~~~s~~eIA~~l~is~---~tV~~~ 50 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTR---ERIRQI 50 (73)
T ss_dssp SCCCHHHHHHHHTCCH---HHHHHH
T ss_pred CCCCHHHHHHHHCCCH---HHHHHH
Confidence 6799999999999988 555443
No 199
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=67.48 E-value=4.2 Score=25.51 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=20.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 22 ~~~~G~~~~ti~~IA~~agvs~---~t~Y~ 48 (193)
T 2dg8_A 22 IAEEGIARVSHRRIAQRAGVPL---GSMTY 48 (193)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCT---HHHHH
T ss_pred HHHhChhhccHHHHHHHhCCCc---hhhhe
Confidence 44444 6789999999999988 66665
No 200
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=67.05 E-value=4.3 Score=25.13 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.+ ..+++
T Consensus 15 f~~~Gy~~~s~~~Ia~~agvsk---gtlY~ 41 (179)
T 2eh3_A 15 FFEKGYQGTSVEEIVKRANLSK---GAFYF 41 (179)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCCccCCHHHHHHHhCCCc---HHHHH
Confidence 44445 7899999999999987 65654
No 201
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=67.04 E-value=2.1 Score=27.37 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++|-.+||+.+|+.+ ..+.|+|+-
T Consensus 167 ~~t~~~iA~~lg~sr---~tvsR~l~~ 190 (210)
T 3ryp_A 167 KITRQEIGQIVGCSR---ETVGRILKM 190 (210)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred ccCHHHHHHHhCCcH---HHHHHHHHH
Confidence 789999999999999 999999874
No 202
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=67.02 E-value=3.1 Score=31.27 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=27.5
Q ss_pred hCchHHHHhCCCCC-CHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 48 LGIPDVIHKHGQPM-TLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 48 LgI~d~L~~~~gp~-S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
++.++.|-...+.. |..|+|+..|+++ +..+|+-|.|
T Consensus 53 ~~~~~~llg~~~~y~t~~~~a~~~g~~~---~~~~r~wral 90 (407)
T 1y10_A 53 LLATRHLVGDDGTYVSAREISENYGVDL---ELLQRVQRAV 90 (407)
T ss_dssp TTTTGGGGTCCSCEECHHHHHHHHTCCH---HHHHHHHHHT
T ss_pred hhhHHHhcCCCcCcCCHHHHHHHhCCCH---HHHHHHHHHc
Confidence 34445554323555 9999999999999 8899988875
No 203
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=67.00 E-value=4.3 Score=25.52 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..+++
T Consensus 25 f~e~G~~~~t~~~IA~~agvsk---~tlY~ 51 (192)
T 2fq4_A 25 LLESGFKAVTVDKIAERAKVSK---ATIYK 51 (192)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCcccccHHHHHHHcCCCH---HHHHH
Confidence 44445 7899999999999988 66665
No 204
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=66.81 E-value=2.7 Score=27.43 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=22.4
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-++|-.+||+.+|+.+ +.+.|+++-
T Consensus 179 ~~~t~~~lA~~lg~sr---~tvsR~l~~ 203 (232)
T 2gau_A 179 IYLSREELATLSNMTV---SNAIRTLST 203 (232)
T ss_dssp CCCCHHHHHHHTTSCH---HHHHHHHHH
T ss_pred cccCHHHHHHHhCCCH---HHHHHHHHH
Confidence 4789999999999999 999999874
No 205
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=66.67 E-value=6.4 Score=24.80 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=21.3
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
+.+.| ...|+.+||++.|+++ ..+++-
T Consensus 30 ~~~~G~~~~t~~~IA~~agvs~---~t~Y~~ 57 (218)
T 3gzi_A 30 FIERPYAQVSIREIASLAGTDP---GLIRYY 57 (218)
T ss_dssp HHTSCCSCCCHHHHHHHHTSCT---HHHHHH
T ss_pred HHHCCCCcCCHHHHHHHhCCCH---HHHHHH
Confidence 45545 6789999999999998 767653
No 206
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=66.66 E-value=5.2 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=20.4
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 30 ~~~~G~~~~s~~~Ia~~agvs~---~t~Y~ 56 (206)
T 3kz9_A 30 FARRGIGRGGHADIAEIAQVSV---ATVFN 56 (206)
T ss_dssp HHHSCCSSCCHHHHHHHHTSCH---HHHHH
T ss_pred HHhcCcccccHHHHHHHhCCCH---HHHHH
Confidence 44445 6799999999999988 66655
No 207
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=66.64 E-value=4.3 Score=25.29 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=20.3
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 25 ~~~~G~~~~t~~~Ia~~agvs~---~t~Y~ 51 (202)
T 3lwj_A 25 FIEKGYYNTSIRDIIALSEVGT---GTFYN 51 (202)
T ss_dssp HHHHCTTTCCHHHHHHHHCSCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCc---hhHHH
Confidence 44445 6789999999999988 66665
No 208
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=66.64 E-value=4.4 Score=25.15 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=20.3
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+++ ..+++
T Consensus 21 ~~~~G~~~~t~~~IA~~Agvs~---~tly~ 47 (194)
T 3dpj_A 21 FYRQGFAQTSFVDISAAVGISR---GNFYY 47 (194)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHHCCCh---HHHHH
Confidence 44445 6899999999999988 66665
No 209
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.45 E-value=2 Score=26.33 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=28.4
Q ss_pred HhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 47 ELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 47 eLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|.-|...|.++| ..++..||..+++++. ..+.|+|+.|
T Consensus 39 E~lVy~~I~~aGn~GIw~kdL~~~tnL~~---~~vtkiLK~L 77 (95)
T 2yu3_A 39 EKLVYQIIEDAGNKGIWSRDVRYKSNLPL---TEINKILKNL 77 (95)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCH---HHHHHHHHHH
Confidence 334555665544 6689999999999998 8888888754
No 210
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=66.26 E-value=5.8 Score=25.12 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=20.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..+++
T Consensus 24 f~~~G~~~~s~~~IA~~aGvsk---gtlY~ 50 (210)
T 2xdn_A 24 FYKRGVARTTLADIAELAGVTR---GAIYW 50 (210)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCT---THHHH
T ss_pred HHHcCcccCcHHHHHHHHCCCh---HHHHH
Confidence 34445 7899999999999988 66655
No 211
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=66.22 E-value=2.5 Score=27.43 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-++|-.+||+.+|+.+ +.+.|+|+-
T Consensus 176 ~~~t~~~lA~~lg~sr---~tvsR~l~~ 200 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASR---ETVNKALAD 200 (227)
T ss_dssp CCCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcH---HHHHHHHHH
Confidence 3689999999999999 999999874
No 212
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=66.12 E-value=5 Score=25.06 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=20.4
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.. ..+++
T Consensus 20 ~~~~G~~~~t~~~Ia~~agvs~---~t~Y~ 46 (195)
T 2dg7_A 20 YSEHGYDNVTVTDIAERAGLTR---RSYFR 46 (195)
T ss_dssp HHHSCGGGCCHHHHHHHTTCCH---HHHHH
T ss_pred HHhcCccccCHHHHHHHhCCCH---HHHHH
Confidence 44445 6789999999999988 66665
No 213
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=66.06 E-value=2.8 Score=28.26 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 57 HGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 57 ~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+++.|..+||+.+++++ ..+.|.++-
T Consensus 17 ~~~~~~~~~lA~~l~vs~---~tvs~~l~~ 43 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSP---PAVTEMMKK 43 (214)
T ss_dssp SCSCCCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCh---hHHHHHHHH
Confidence 358999999999999998 777777653
No 214
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=66.02 E-value=6.7 Score=24.92 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
-..+.+|.+ .+.+.| ..+|+.+||++.|+.+ ..+++
T Consensus 31 ~~Il~aa~~-----lf~~~G~~~~tv~~IA~~agvs~---~t~Y~ 67 (215)
T 2qko_A 31 AALVNAAIE-----VLAREGARGLTFRAVDVEANVPK---GTASN 67 (215)
T ss_dssp HHHHHHHHH-----HHHHTCTTTCCHHHHHHHSSSTT---TCHHH
T ss_pred HHHHHHHHH-----HHHHhChhhccHHHHHHHcCCCc---chHHH
Confidence 344555544 345545 6799999999999988 55554
No 215
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=65.99 E-value=5.7 Score=25.04 Aligned_cols=35 Identities=9% Similarity=0.260 Sum_probs=24.5
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..|.+|.++ +.+.| ...|+.+||++.|+.+ ..+++
T Consensus 16 ~Il~aA~~l-----f~~~G~~~~s~~~IA~~aGvs~---~tlY~ 51 (197)
T 2hyt_A 16 TLLATARKV-----FSERGYADTSMDDLTAQASLTR---GALYH 51 (197)
T ss_dssp HHHHHHHHH-----HHHHCTTTCCHHHHHHHHTCCT---THHHH
T ss_pred HHHHHHHHH-----HHHhCcccCCHHHHHHHhCCCH---HHHHH
Confidence 445555442 44445 7899999999999988 66665
No 216
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=65.92 E-value=2.3 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-|+|-.+||+.+|+.+ ..+.|+++-
T Consensus 177 l~~t~~~iA~~lg~sr---~tvsR~l~~ 201 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKP---ESLSRAFSR 201 (237)
T ss_dssp CCSCTHHHHHHTTCCH---HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 4678999999999999 999999874
No 217
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=65.77 E-value=5.8 Score=24.87 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
-..+.+|.++ +.+.| ..+|+.+||++.|++. ..+++
T Consensus 34 ~~Il~aa~~l-----~~~~G~~~~tv~~Ia~~agvs~---~t~Y~ 70 (218)
T 3dcf_A 34 TQIIKVATEL-----FREKGYYATSLDDIADRIGFTK---PAIYY 70 (218)
T ss_dssp HHHHHHHHHH-----HHHTCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHHH-----HHHcCcccCcHHHHHHHhCCCH---HHHHH
Confidence 3444455443 45545 6799999999999988 66654
No 218
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=65.41 E-value=2.3 Score=27.54 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=21.7
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|+|-.+||+.+|+.+ +.+.|+|+-
T Consensus 187 ~lt~~~lA~~lg~sr---~tvsR~l~~ 210 (230)
T 3iwz_A 187 RVSRQELARLVGCSR---EMAGRVLKK 210 (230)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCCHHHHHHHhCCcH---HHHHHHHHH
Confidence 579999999999999 999999874
No 219
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=65.05 E-value=2.8 Score=27.26 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.6
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++|-.+||+.+|+.+ +.+.|+++-
T Consensus 163 ~~t~~~lA~~lG~sr---~tvsR~l~~ 186 (222)
T 1ft9_A 163 DFTVEEIANLIGSSR---QTTSTALNS 186 (222)
T ss_dssp CCCHHHHHHHHCSCH---HHHHHHHHH
T ss_pred cCCHHHHHHHhCCcH---HHHHHHHHH
Confidence 479999999999999 999999874
No 220
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=64.99 E-value=5.3 Score=25.02 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=20.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 31 ~~~~G~~~~s~~~Ia~~agvs~---~t~Y~ 57 (212)
T 1pb6_A 31 FSQFGFHGTRLEQIAELAGVSK---TNLLY 57 (212)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCH---HHHHH
T ss_pred HHHcCcchhhHHHHHHHHCCCh---hHHHH
Confidence 34434 6789999999999988 66665
No 221
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=64.99 E-value=2.4 Score=27.16 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=21.7
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++|-.+||+.+|+.+ ..+.|+|+-
T Consensus 146 ~~t~~~lA~~lg~sr---~tvsR~l~~ 169 (202)
T 2zcw_A 146 KATHDELAAAVGSVR---ETVTKVIGE 169 (202)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 589999999999999 999999874
No 222
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=64.85 E-value=5 Score=25.00 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=24.7
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.++.+|.+| +.+.| ...|+.+||++.|+.. ..+++
T Consensus 7 ~Il~aA~~l-----f~~~G~~~~s~~~IA~~agvsk---~t~Y~ 42 (190)
T 3vpr_A 7 RILEEAAKL-----FTEKGYEATSVQDLAQALGLSK---AALYH 42 (190)
T ss_dssp HHHHHHHHH-----HHHHCSTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHH-----HHHhCcccCCHHHHHHHhCCCH---HHHHH
Confidence 345555543 44445 7789999999999988 66665
No 223
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=64.85 E-value=6.2 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=20.5
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.. ..+++
T Consensus 43 ~~~~G~~~~t~~~IA~~aGvs~---~t~Y~ 69 (222)
T 3bru_A 43 LTEKGYSSVGVDEILKAARVPK---GSFYH 69 (222)
T ss_dssp HHHSCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCCCcCcHHHHHHHhCCCc---chhhh
Confidence 45555 6799999999999988 66655
No 224
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=64.81 E-value=2.4 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.7
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++|-.+||+.+|+.+ +.+.|+|+-
T Consensus 139 ~~t~~~lA~~lg~sr---~tvsR~l~~ 162 (195)
T 3b02_A 139 TVSHEEIADATASIR---ESVSKVLAD 162 (195)
T ss_dssp ECCHHHHHHTTTSCH---HHHHHHHHH
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 589999999999999 999999874
No 225
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=64.80 E-value=4.3 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=20.8
Q ss_pred HHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 53 VIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 53 ~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+.+.| ...|+.+||++.|+++ ..+++
T Consensus 16 l~~~~G~~~~t~~~Ia~~agvs~---~t~Y~ 43 (170)
T 3egq_A 16 LYMKKPPHEVSIEEIAREAKVSK---SLIFY 43 (170)
T ss_dssp HHTTSCGGGCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHhcCCccCcHHHHHHHhCCCc---hhHHH
Confidence 355555 6789999999999988 66655
No 226
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=64.61 E-value=4.6 Score=21.03 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=18.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|+|..+|+++ ..+.|+.+
T Consensus 13 ~g~s~~~lA~~~gis~---~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSR---QTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 4588999999999887 77776653
No 227
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=64.33 E-value=6.5 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=20.5
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||+++|+.+ ..+++
T Consensus 25 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 51 (189)
T 3vp5_A 25 FQTHSFHEAKIMHIVKALDIPR---GSFYQ 51 (189)
T ss_dssp HHHSCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHCCcccccHHHHHHHhCCCh---HHHHH
Confidence 45545 6789999999999988 66665
No 228
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=64.17 E-value=3.3 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+++.+..|||..++++. ..|.|++.-
T Consensus 34 g~~~s~~eLa~~l~l~~---stLsR~l~r 59 (96)
T 2obp_A 34 ATPWSLPKIAKRAQLPM---SVLRRVLTQ 59 (96)
T ss_dssp CCCCBHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCch---hhHHHHHHH
Confidence 47899999999999998 888887753
No 229
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=63.89 E-value=5.3 Score=25.00 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=20.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+++ ..+++
T Consensus 27 ~~~~G~~~~ti~~IA~~agvs~---~t~Y~ 53 (212)
T 3knw_A 27 VLRKGFVGVGLQEILKTSGVPK---GSFYH 53 (212)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCCccCCHHHHHHHhCCCh---HHHHH
Confidence 33334 6799999999999988 66665
No 230
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=63.75 E-value=4.3 Score=24.91 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=19.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.+ ..+++
T Consensus 23 ~~~~G~~~~t~~~IA~~agvs~---~t~Y~ 49 (191)
T 3on4_A 23 IQKDGYNAFSFKDIATAINIKT---ASIHY 49 (191)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHhCCCc---chhhh
Confidence 34434 6789999999999988 66665
No 231
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=63.71 E-value=5.4 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=20.0
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 27 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 53 (220)
T 3lhq_A 27 FSQQGVSATSLAEIANAAGVTR---GAIYW 53 (220)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCc---eeehh
Confidence 44445 6789999999999988 66654
No 232
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=63.66 E-value=2.6 Score=27.05 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-++|-.+||+.+|+.+ ..+.|+++-
T Consensus 162 ~~~t~~~lA~~lg~sr---~tvsR~l~~ 186 (216)
T 4ev0_A 162 FQIRHHELAALAGTSR---ETVSRVLHA 186 (216)
T ss_dssp EECCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 4689999999999999 999999864
No 233
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=63.60 E-value=2.7 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-++|-.+||+.+|+.+ ..+.|+++-
T Consensus 177 ~~~t~~~lA~~lg~sr---~tvsR~l~~ 201 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQP---ETFSRIMHR 201 (227)
T ss_dssp CCSCTHHHHHHTTSCH---HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 4678999999999999 999999864
No 234
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=63.60 E-value=5.9 Score=24.83 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=20.0
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|++. ..+++
T Consensus 30 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 56 (207)
T 2rae_A 30 FTEQGFDATSVDEVAEASGIAR---RTLFR 56 (207)
T ss_dssp HHHHCTTTSCHHHHHHHTTSCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCc---chHhh
Confidence 44444 6789999999999987 66665
No 235
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=63.41 E-value=3.9 Score=23.03 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.2
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..|||+.+|+++ ..+.|+|+
T Consensus 9 ~~t~~diA~~aGVS~---sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVST---ATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCH---HHHHHTTT
T ss_pred CCCHHHHHHHHCCCH---HHHHHHHc
Confidence 468999999999887 66776653
No 236
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=63.37 E-value=4.5 Score=24.83 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=19.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 21 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 47 (194)
T 2g7s_A 21 IIRGGYNSFSYADISQVVGIRN---ASIHH 47 (194)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCc---hHHHH
Confidence 44445 6789999999999988 66655
No 237
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=63.23 E-value=5.3 Score=20.94 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=17.0
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCC
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQK 74 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~ 74 (87)
.|+..+. ...|..|||..+|+++
T Consensus 5 ~vl~l~~---~g~s~~eIA~~l~is~ 27 (61)
T 2jpc_A 5 QVLKLID---EGYTNHGISEKLHISI 27 (61)
T ss_dssp HHHHHHH---TSCCSHHHHHHTCSCH
T ss_pred HHHHHHH---cCCCHHHHHHHhCCCH
Confidence 3455444 4578999999999987
No 238
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=63.21 E-value=5.3 Score=24.74 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| . .|+.+||++.|+++ ..+++
T Consensus 22 f~~~G~~-~t~~~IA~~aGvs~---~tly~ 47 (190)
T 3jsj_A 22 TYRDGVG-IGVEALCKAAGVSK---RSMYQ 47 (190)
T ss_dssp HHHHCTT-CCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhCcc-ccHHHHHHHhCCCH---HHHHH
Confidence 44445 7 99999999999988 66655
No 239
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=63.06 E-value=4.3 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=19.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 24 f~~~G~~~~tv~~Ia~~agvs~---~t~Y~ 50 (196)
T 3he0_A 24 IAESGFQGLSMQKLANEAGVAA---GTIYR 50 (196)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH---HHHHT
T ss_pred HHHhCcccCCHHHHHHHhCCCc---chHHH
Confidence 44445 6799999999999987 55543
No 240
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=63.05 E-value=5.7 Score=21.55 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=17.5
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
...|..|||+.+|+++ ..+.+.
T Consensus 24 ~g~s~~eIA~~lgis~---~tV~~~ 45 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTR---ERIRQI 45 (68)
T ss_dssp SCCCHHHHHHHHTCCH---HHHHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHH
Confidence 5799999999999988 544443
No 241
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=62.91 E-value=6.7 Score=25.43 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=20.5
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..+||..+|++. ..++|+++
T Consensus 158 G~s~~~Ia~~l~is~---~tv~r~l~ 180 (183)
T 1gdt_A 158 GLGASHISKTMNIAR---STVYKVIN 180 (183)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHh
Confidence 469999999999988 88999886
No 242
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=62.81 E-value=4.5 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.+ ..+++
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~---~t~Y~ 46 (199)
T 3qbm_A 20 FNVSGYAGTAISDIMAATGLEK---GGIYR 46 (199)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH---HHHHT
T ss_pred HHHhCcCcCCHHHHHHHhCCCc---cHHHH
Confidence 44445 7789999999999987 55554
No 243
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=62.72 E-value=7.3 Score=26.32 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 52 DVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 52 d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+.|.++ ..+.|+++||+.+++++ ..|.|+.+
T Consensus 176 ~~i~~~~~~~~sl~~lA~~~~~S~---~~l~r~fk 207 (276)
T 3gbg_A 176 CLVKSDITRNWRWADICGELRTNR---MILKKELE 207 (276)
T ss_dssp HHHHHTTTSCCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 344443 37899999999999999 88999876
No 244
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=62.67 E-value=4.5 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=19.7
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+++ ..+++
T Consensus 24 f~~~G~~~~s~~~Ia~~agvs~---~t~Y~ 50 (203)
T 3b81_A 24 FIANGYENTTLAFIINKLGISK---GALYH 50 (203)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH---HHHHT
T ss_pred HHHcCcccCcHHHHHHHhCCCc---hhHHH
Confidence 44445 6799999999999987 55554
No 245
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=62.61 E-value=6 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=18.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| . .|+.+||++.|+.+ ..+++
T Consensus 28 f~~~G~~-~s~~~IA~~agvs~---~tlY~ 53 (194)
T 2q24_A 28 FSEEGLD-AHLERIAREAGVGS---GTLYR 53 (194)
T ss_dssp HHHHCTT-CCHHHHHHHTTCCH---HHHHH
T ss_pred HHhcCcC-CCHHHHHHHhCCCh---HHHHH
Confidence 34435 6 89999999999988 66654
No 246
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=62.59 E-value=7 Score=24.85 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=24.5
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+|.+|.+| +.+.| ...|..+||++.|+.+ ..+++
T Consensus 15 ~Il~aA~~l-----f~~~G~~~~s~~~IA~~aGvsk---gtlY~ 50 (210)
T 2wui_A 15 GILDAAERV-----FLEKGVGTTAMADLADAAGVSR---GAVYG 50 (210)
T ss_dssp HHHHHHHHH-----HHHSCTTTCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHHHHHHH-----HHHcCccccCHHHHHHHhCCCH---HHHHH
Confidence 344555442 44555 7789999999999988 66665
No 247
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=62.55 E-value=5.8 Score=21.46 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=19.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.|+.+
T Consensus 20 ~glsq~~lA~~~gis~---~~is~~e~ 43 (73)
T 3omt_A 20 KGKTNLWLTETLDKNK---TTVSKWCT 43 (73)
T ss_dssp HTCCHHHHHHHTTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 4579999999999988 77777654
No 248
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=62.47 E-value=5.4 Score=26.28 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=29.3
Q ss_pred HHhCchHHHHhCC-CCCCHHHHHHhcC-CCCCChhhHHHHHhcC
Q 041968 46 VELGIPDVIHKHG-QPMTLSQIASALD-IQKNKAHCIQRLMRIL 87 (87)
Q Consensus 46 veLgI~d~L~~~~-gp~S~~ELA~~~~-~~~~~~~~L~RlLR~L 87 (87)
.++.|+..|..++ +..|+.||+..++ ++. ..++|-|+.|
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~---aTVyrhL~~L 70 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETE---ANLRYHVDEL 70 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCH---HHHHHHHHHH
Confidence 4555666665443 6789999999998 888 8899988754
No 249
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=62.40 E-value=3.7 Score=29.14 Aligned_cols=26 Identities=42% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.+++|..|||+++|++. ..++|.|..
T Consensus 19 ~~~~~~~ela~~l~vS~---~tIrRdL~~ 44 (315)
T 2w48_A 19 EQDMTQAQIARELGIYR---TTISRLLKR 44 (315)
T ss_dssp TSCCCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 37799999999999999 999998864
No 250
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=62.29 E-value=5.5 Score=25.50 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=20.5
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..++|
T Consensus 35 f~e~G~~~~s~~~IA~~AGVsk---~tlY~ 61 (207)
T 3bjb_A 35 ATEKELARVQMHEVAKRAGVAI---GTLYR 61 (207)
T ss_dssp HHHSCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCH---HHHHH
Confidence 45545 6789999999999988 66665
No 251
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=62.29 E-value=4.5 Score=25.01 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=20.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|++. ..+++
T Consensus 21 ~~~~G~~~~t~~~Ia~~agvs~---~t~Y~ 47 (206)
T 3dew_A 21 FAQKGFYGVSIRELAQAAGASI---SMISY 47 (206)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HhcCCcccCcHHHHHHHhCCCH---HHHHH
Confidence 34434 5789999999999988 66665
No 252
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=62.20 E-value=3.4 Score=27.42 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-++|-.+||+.+|+.+ ..+.|+++-
T Consensus 176 ~~~t~~~iA~~lG~sr---~tvsR~l~~ 200 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHH---VTVSRVLAS 200 (250)
T ss_dssp CCCCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcH---HHHHHHHHH
Confidence 3789999999999999 999999874
No 253
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=62.10 E-value=2.8 Score=27.56 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.7
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++|-.+||+.+|+.+ +.+.|+++-
T Consensus 186 ~~t~~~lA~~lG~sr---~tvsR~l~~ 209 (232)
T 1zyb_A 186 KVKMDDLARCLDDTR---LNISKTLNE 209 (232)
T ss_dssp ECCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred cCCHHHHHHHhCCCh---hHHHHHHHH
Confidence 579999999999999 999999874
No 254
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=61.97 E-value=1.6 Score=27.66 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.++|-.+||+.+|+.+ +.+.|+++-|
T Consensus 167 ~~~t~~~iA~~lG~sr---etlsR~l~~l 192 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTP---EYLSEIRKKY 192 (194)
T ss_dssp -----------------------------
T ss_pred HHCCHHHHHHHhCCCH---HHHHHHHHhh
Confidence 6789999999999999 8899998743
No 255
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=61.89 E-value=6.3 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=17.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
..+|..|||+.+|+++ ..+.+++
T Consensus 21 ~glT~~~LA~~~Gvs~---stls~~~ 43 (74)
T 1neq_A 21 RKLSLSALSRQFGYAP---TTLANAL 43 (74)
T ss_dssp TSCCHHHHHHHHSSCH---HHHHHTT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 5588888888888877 6666543
No 256
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=61.73 E-value=5.8 Score=25.72 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..++.+|.+ .+.+.| ..+|+.+||++.|+.+ ..+++-
T Consensus 42 ~~Il~AA~~-----lf~e~G~~~~tv~~IA~~AGvs~---~tlY~~ 79 (214)
T 2guh_A 42 SLIVDAAGR-----AFATRPYREITLKDIAEDAGVSA---PLIIKY 79 (214)
T ss_dssp HHHHHHHHH-----HHHHSCGGGCCHHHHHHHHTSCH---HHHHHH
T ss_pred HHHHHHHHH-----HHHHcChhhcCHHHHHHHhCCCH---HHHHHH
Confidence 344555543 355555 6789999999999988 767653
No 257
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=61.59 E-value=5.4 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.5
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ...|+.+||++.|+..
T Consensus 27 f~~~G~~~~s~~~Ia~~agvs~ 48 (203)
T 3ccy_A 27 FARQGYSETSIGDIARACECSK 48 (203)
T ss_dssp HHHTCTTTSCHHHHHHHTTCCG
T ss_pred HHHcCcccCCHHHHHHHhCCCc
Confidence 45556 7899999999999977
No 258
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=61.49 E-value=3.6 Score=27.32 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
-++|-.+||+.+|+.+ +.+.|+|+-
T Consensus 192 ~~lt~~~lA~~lG~sr---~tvsR~l~~ 216 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTR---VTVTRLLGD 216 (243)
T ss_dssp SCCCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred ccCCHHHHHHHHCCcH---HHHHHHHHH
Confidence 4789999999999999 999999874
No 259
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=61.32 E-value=4.9 Score=24.76 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.8
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ...|+.+||++.|+++
T Consensus 20 ~~~~G~~~~s~~~IA~~agvs~ 41 (180)
T 2fd5_A 20 LLERGAVEPSVGEVMGAAGLTV 41 (180)
T ss_dssp HHHHTTTSCCHHHHHHHTTCCG
T ss_pred HHHhCcccCCHHHHHHHhCCCc
Confidence 44444 6789999999999987
No 260
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=61.31 E-value=3.7 Score=25.09 Aligned_cols=31 Identities=3% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCC
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
-..+.+|.+ .+.+.| ..+|+.+||++.|+++
T Consensus 15 ~~Il~aa~~-----l~~~~G~~~~tv~~Ia~~agvs~ 46 (177)
T 3kkc_A 15 VAIYNAFIS-----LLQENDYSKITVQDVIGLANVGR 46 (177)
T ss_dssp HHHHHHHHH-----HTTTSCTTTCCHHHHHHHHCCCH
T ss_pred HHHHHHHHH-----HHHhCChhHhhHHHHHHHhCCcH
Confidence 344455544 345545 6899999999999977
No 261
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=61.24 E-value=6.3 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=20.7
Q ss_pred HHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 53 VIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 53 ~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+.+.| ...|+.+||++.|+.. ..+++
T Consensus 20 lf~~~G~~~~t~~~IA~~agvs~---~tlY~ 47 (199)
T 2o7t_A 20 LYRTHHHDSLTMENIAEQAGVGV---ATLYR 47 (199)
T ss_dssp HHHHSCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHCCCccCCHHHHHHHhCCCH---HHHHH
Confidence 345555 6789999999999988 66654
No 262
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=61.13 E-value=6.8 Score=22.46 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=17.7
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
...|..|||..+|+++ ..+.+.
T Consensus 37 ~~~s~~EIA~~lgis~---~tV~~~ 58 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTR---ERIRQI 58 (87)
T ss_dssp SCCCHHHHHHHHTCCH---HHHHHH
T ss_pred CCCCHHHHHHHHCCCH---HHHHHH
Confidence 6799999999999988 554443
No 263
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=61.03 E-value=6.4 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=20.0
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+++ ..+++
T Consensus 24 f~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 50 (216)
T 3f0c_A 24 FAHYGLCKTTMNEIASDVGMGK---ASLYY 50 (216)
T ss_dssp HHHHCSSSCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCCCcCCHHHHHHHhCCCH---HHHHH
Confidence 44445 6799999999999988 66654
No 264
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=61.00 E-value=5.8 Score=20.73 Aligned_cols=24 Identities=8% Similarity=0.201 Sum_probs=18.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..++|..+|+++ ..+.|+.+
T Consensus 17 ~g~s~~~lA~~~gis~---~~i~~~e~ 40 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSN---VAISQWER 40 (68)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCCCH---HHHHHHHc
Confidence 3578899999999887 66666543
No 265
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=60.90 E-value=6.9 Score=24.70 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
-..+.+|.+| +.+.| ...|+.+||++.|+.. ..+++
T Consensus 17 ~~Il~aA~~l-----f~~~G~~~~s~~~IA~~agvs~---~tlY~ 53 (204)
T 2ibd_A 17 TELLDIAATL-----FAERGLRATTVRDIADAAGILS---GSLYH 53 (204)
T ss_dssp HHHHHHHHHH-----HHHHCSTTCCHHHHHHHTTSCH---HHHHH
T ss_pred HHHHHHHHHH-----HHHcCchhcCHHHHHHHhCCCc---hhHHH
Confidence 3445555443 34445 7789999999999987 55554
No 266
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=60.82 E-value=6.8 Score=21.10 Aligned_cols=16 Identities=44% Similarity=0.358 Sum_probs=13.4
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||+.+|+++
T Consensus 25 ~g~s~~eIA~~l~is~ 40 (74)
T 1fse_A 25 QDKTTKEIASELFISE 40 (74)
T ss_dssp TTCCHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHCCCH
Confidence 3469999999999987
No 267
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=60.61 E-value=5 Score=26.26 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=19.5
Q ss_pred HHhCCCCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHGQPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| .+|+.+||+++|+.+ ..+|+
T Consensus 24 ~~~~G-~~s~~~IA~~aGvs~---~tlY~ 48 (213)
T 2g7g_A 24 VDRDG-DFRMPDLARHLNVQV---SSIYH 48 (213)
T ss_dssp HHHHS-SCCHHHHHHHTTSCH---HHHHT
T ss_pred HHHcC-CCCHHHHHHHhCCCH---hHHHH
Confidence 44445 899999999999988 66654
No 268
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=60.59 E-value=6.6 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=24.3
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+|.+|.++ +.+.| ...|+.+||++.|+.+ ..+++
T Consensus 14 ~Il~aA~~l-----f~~~G~~~~s~~~IA~~aGvs~---gtlY~ 49 (194)
T 2nx4_A 14 SITAAAWRL-----IAARGIEAANMRDIATEAGYTN---GALSH 49 (194)
T ss_dssp HHHHHHHHH-----HHHHCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHH-----HHhcCcccCCHHHHHHHhCCCc---chHHH
Confidence 445555442 44445 7789999999999988 66654
No 269
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=60.57 E-value=6.5 Score=24.97 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=20.8
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
+.+.| ...|+.+||++.|+.. ..+++-
T Consensus 21 f~~~G~~~~s~~~IA~~aGvs~---~tiY~~ 48 (202)
T 2d6y_A 21 FARHGIAGARIDRIAAEARANK---QLIYAY 48 (202)
T ss_dssp HHHHTTTSCCHHHHHHHHTCCH---HHHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCH---HHHHHH
Confidence 44445 6799999999999988 666653
No 270
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=60.21 E-value=7.7 Score=25.71 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..+||..+|+.. ..++|+++
T Consensus 175 G~s~~~Ia~~l~is~---~tv~r~l~ 197 (209)
T 2r0q_C 175 GQAISKIAKEVNITR---QTVYRIKH 197 (209)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHh
Confidence 379999999999988 88999886
No 271
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=60.17 E-value=6.6 Score=24.93 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=24.6
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+|.+|.+| +.+.| ...|+.+||++.|+.+ ..+++
T Consensus 15 ~Il~aA~~l-----F~~~Gy~~ts~~~IA~~aGvsk---~tlY~ 50 (202)
T 2i10_A 15 VALQTAMEL-----FWRQGYEGTSITDLTKALGINP---PSLYA 50 (202)
T ss_dssp HHHHHHHHH-----HHHHTTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHH-----HHHhCcccCCHHHHHHHhCCCh---HHHHH
Confidence 345555543 33345 7889999999999988 66665
No 272
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=60.15 E-value=6.6 Score=24.72 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..+++
T Consensus 22 f~~~G~~~~t~~~Ia~~Agvs~---gt~Y~ 48 (204)
T 3anp_C 22 FRNRGFQETTATEIAKAAHVSR---GTFFN 48 (204)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHcCcccccHHHHHHHcCCch---HHHHH
Confidence 44445 6789999999999987 55554
No 273
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=59.87 E-value=7 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=20.0
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.+ ..+++
T Consensus 20 f~~~G~~~ts~~~IA~~aGvs~---gtlY~ 46 (197)
T 2gen_A 20 FSEHGVDATTIEMIRDRSGASI---GSLYH 46 (197)
T ss_dssp HHHHCTTTCCHHHHHHHHCCCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHHCCCh---HHHHH
Confidence 34445 6789999999999988 66655
No 274
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=59.79 E-value=6.2 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||..+|+++ ..+.|+.+
T Consensus 15 ~glsq~~lA~~~gis~---~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGVKQ---QSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHHc
Confidence 4588999999999887 77776653
No 275
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=59.49 E-value=6.2 Score=26.51 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=26.4
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
-.|.+.|.++ +.+|+.|||+.+++++ ..++|=|.
T Consensus 15 ~~i~~~l~~~-~~~~~~~la~~~~vs~---~TiRrDl~ 48 (190)
T 4a0z_A 15 EAIRQQIDSN-PFITDHELSDLFQVSI---QTIRLDRT 48 (190)
T ss_dssp HHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHH
T ss_pred HHHHHHHHHC-CCEeHHHHHHHHCCCH---HHHHHHHH
Confidence 3466777764 7899999999999988 77777543
No 276
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=59.37 E-value=6 Score=21.39 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=19.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..+||..+|+++ ..+.++.+
T Consensus 19 ~g~sq~~lA~~~gis~---~~i~~~e~ 42 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQ---STVNAMFE 42 (78)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHC
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 4589999999999988 77777653
No 277
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=59.36 E-value=4.4 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=19.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.+ ..+++
T Consensus 23 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 49 (196)
T 3col_A 23 ILAEGPAGVSTTKVAKRVGIAQ---SNVYL 49 (196)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH---HHHHT
T ss_pred HHhcCcccCCHHHHHHHhCCcH---HHHHH
Confidence 44434 5789999999999987 55543
No 278
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=59.27 E-value=7 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..+++
T Consensus 23 f~~~G~~~~s~~~Ia~~Agvsk---gt~Y~ 49 (197)
T 2f07_A 23 ISEKGLDKASISDIVKKAGTAQ---GTFYL 49 (197)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHhCCCc---hHHHH
Confidence 44445 7789999999999977 55554
No 279
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=59.02 E-value=7.2 Score=24.30 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=18.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|+.+||++.|++. ..+++-
T Consensus 35 ~~~t~~~Ia~~agvs~---~t~Y~~ 56 (213)
T 2qtq_A 35 VDISLSELSLRSGLNS---ALVKYY 56 (213)
T ss_dssp SCCCHHHHHHHHCCCH---HHHHHH
T ss_pred ccccHHHHHHHhCCCh---hhHhHh
Confidence 6789999999999988 666653
No 280
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=58.84 E-value=5 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=16.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ..+|+.+||++.|+..
T Consensus 26 f~~~G~~~~tv~~Ia~~agvs~ 47 (195)
T 2iu5_A 26 MQSNAYHQISVSDIMQTAKIRR 47 (195)
T ss_dssp HHHSCGGGCCHHHHHHHHTSCG
T ss_pred HHhCCCCeeCHHHHHHHhCCCH
Confidence 44444 5789999999999977
No 281
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=58.70 E-value=6.5 Score=21.06 Aligned_cols=24 Identities=8% Similarity=0.201 Sum_probs=18.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||+.+|+++ ..+.|+.+
T Consensus 17 ~gls~~~lA~~~gis~---~~i~~~e~ 40 (76)
T 1adr_A 17 LKIRQAALGKMVGVSN---VAISQWER 40 (76)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 3578899999999887 66666543
No 282
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=58.62 E-value=6 Score=24.53 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=19.4
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 30 f~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 56 (208)
T 3cwr_A 30 LSSGGAAAMTMEGVASEAGIAK---KTLYR 56 (208)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCHHhccHHHHHHHhCCCH---HHHHH
Confidence 33334 5689999999999988 66654
No 283
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=58.59 E-value=6.2 Score=24.96 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+|.+|.++ +.+.| ...|+.+||++.|+.+ ..+++
T Consensus 13 ~Il~aA~~l-----f~~~G~~~~s~~~IA~~aGvsk---~tlY~ 48 (203)
T 3cdl_A 13 SIVQAAIAE-----FGDRGFEITSMDRIAARAEVSK---RTVYN 48 (203)
T ss_dssp HHHHHHHHH-----HHHHCTTTCCHHHHHHHTTSCH---HHHHT
T ss_pred HHHHHHHHH-----HHHcCchhcCHHHHHHHhCCCH---HHHHH
Confidence 345555542 34445 7789999999999987 55543
No 284
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=58.49 E-value=6.6 Score=24.38 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.4
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
...|..+||..+++++ ..+.|.++.|
T Consensus 50 ~~ps~~~LA~~l~~s~---~~V~~~l~~L 75 (128)
T 2vn2_A 50 LFPTPAELAERMTVSA---AECMEMVRRL 75 (128)
T ss_dssp SSCCHHHHHHTSSSCH---HHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 3369999999999999 7788887653
No 285
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=58.37 E-value=7.5 Score=24.98 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 38 NSMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 38 ~~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.-..+.+|.++ +.+.| ...|+.+||++.|+.+ ..+++
T Consensus 37 r~~Il~aA~~l-----f~~~G~~~~t~~~IA~~AGvs~---~tlY~ 74 (221)
T 3g7r_A 37 RARLLGTATRI-----FYAEGIHSVGIDRITAEAQVTR---ATLYR 74 (221)
T ss_dssp HHHHHHHHHHH-----HHHHCSTTSCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHHHH-----HHHhCcccCCHHHHHHHhCCCH---HHHHH
Confidence 44455555543 34445 6789999999999988 66654
No 286
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=58.34 E-value=7.2 Score=25.33 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|++. ..+++
T Consensus 26 ~~~~G~~~~tv~~IA~~agvs~---~t~Y~ 52 (231)
T 2qib_A 26 FSRRSPDEVSIDEIASAAGISR---PLVYH 52 (231)
T ss_dssp HHHSCGGGCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHcCchhcCHHHHHHHhCCCH---HHHHH
Confidence 44445 6789999999999988 66655
No 287
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=58.26 E-value=5.7 Score=25.18 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=23.2
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQ 81 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~ 81 (87)
.+|.+|.++ +.+.| ...|+.+||++.|+.+ ..++
T Consensus 18 ~Il~aA~~l-----f~~~G~~~~s~~~IA~~agvsk---~tlY 52 (199)
T 3crj_A 18 EIMQATYRA-----LREHGYADLTIQRIADEYGKST---AAVH 52 (199)
T ss_dssp HHHHHHHHH-----HHHHTTTTCCHHHHHHHHTSCH---HHHH
T ss_pred HHHHHHHHH-----HHHcCcccCCHHHHHHHhCCCh---hHHh
Confidence 344555443 44445 7899999999999987 5554
No 288
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=58.24 E-value=5.9 Score=24.80 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+++ ..+++
T Consensus 45 ~~~t~~~Ia~~agvs~---~t~Y~ 65 (217)
T 3mvp_A 45 FNVTTNEIAKKADVSV---GTLYA 65 (217)
T ss_dssp GGCCHHHHHHHHTSCH---HHHHH
T ss_pred cccCHHHHHHHhCCCh---hHHHH
Confidence 5789999999999988 66655
No 289
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=58.20 E-value=5.9 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..+++
T Consensus 21 f~~~Gy~~~s~~~IA~~AGvs~---gt~Y~ 47 (206)
T 1vi0_A 21 IAENGYHQSQVSKIAKQAGVAD---GTIYL 47 (206)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHhCCCh---hHHHH
Confidence 34435 6789999999999988 65654
No 290
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=58.04 E-value=6.9 Score=20.52 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=18.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|+|..+|+++ ..+.++.+
T Consensus 13 ~glsq~~lA~~~gis~---~~i~~~e~ 36 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQ---QSIEQLEN 36 (69)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 4588999999999888 77776653
No 291
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=58.00 E-value=7.9 Score=24.24 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=20.0
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|++. ..+++
T Consensus 23 ~~~~G~~~~ti~~Ia~~agvs~---~t~Y~ 49 (216)
T 3s5r_A 23 FAEQGIAATTMAEIAASVGVNP---AMIHY 49 (216)
T ss_dssp HHHHCTTTCCHHHHHHTTTCCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHHCCCH---HHHHH
Confidence 44445 6789999999999987 66654
No 292
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=57.98 E-value=7 Score=21.04 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=18.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..+||..+|+++ ..+.|+.+
T Consensus 22 ~glsq~~lA~~~gis~---~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHR---TYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCCCH---HHHHHHHC
Confidence 4589999999999887 66766653
No 293
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=57.93 E-value=5.3 Score=25.09 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=17.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ...|+.+||++.|+.+
T Consensus 26 f~~~G~~~~t~~~IA~~agvs~ 47 (217)
T 3nrg_A 26 FAQNDYDSVSINRITERAGIAK 47 (217)
T ss_dssp HHHSCGGGCCHHHHHHHHTCCT
T ss_pred HHhcCcccCCHHHHHHHhCCcH
Confidence 44445 5789999999999987
No 294
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=57.93 E-value=4.8 Score=24.81 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQ 81 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~ 81 (87)
+.+.| ...|+.+||++.|+++ ..++
T Consensus 23 f~~~G~~~~t~~~IA~~agvs~---~tlY 48 (197)
T 3rd3_A 23 MAVKGFSGVGLNEILQSAGVPK---GSFY 48 (197)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH---HHHT
T ss_pred HHHCCcccCCHHHHHHHhCCCh---hhHH
Confidence 44444 6789999999999977 5444
No 295
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=57.90 E-value=4.5 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHhCchHHHHhCCCCCCHHHHHHhcCCC
Q 041968 46 VELGIPDVIHKHGQPMTLSQIASALDIQ 73 (87)
Q Consensus 46 veLgI~d~L~~~~gp~S~~ELA~~~~~~ 73 (87)
+.-.|++.|. ++|+|+.||+..+|++
T Consensus 12 ~Re~Ii~lL~--~~plta~ei~~~l~i~ 37 (105)
T 2gmg_A 12 RREKIIELLL--EGDYSPSELARILDMR 37 (105)
T ss_dssp HHHHHHHHTT--TSCBCTTHHHHSSCCC
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHhCCC
Confidence 3456788887 6999999999999995
No 296
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=57.90 E-value=5.3 Score=25.37 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=19.4
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| . .|+.+||++.|+++ ..+++
T Consensus 25 f~~~G~~-~s~~~IA~~agvs~---~tiY~ 50 (224)
T 1t33_A 25 FGEYGLH-ATTRDIAALAGQNI---AAITY 50 (224)
T ss_dssp HHHHGGG-SCHHHHHHHHTSCH---HHHHH
T ss_pred HHHhCcc-ccHHHHHHHhCCCH---HHHHH
Confidence 44445 7 89999999999988 66665
No 297
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=57.84 E-value=5.6 Score=22.84 Aligned_cols=34 Identities=9% Similarity=0.271 Sum_probs=24.9
Q ss_pred chHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 50 IPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 50 I~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|.+.|-.+| =..+..+||..+|+++ .-+.++|+.
T Consensus 37 iI~~LD~~GYL~~~l~eia~~l~~~~---~eve~vL~~ 71 (76)
T 2k9l_A 37 LLNYLNEKGFLSKSVEEISDVLRCSV---EELEKVRQK 71 (76)
T ss_dssp HHHHCTTSSTTCCCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHhcCCCCCCCCCHHHHHHHcCCCH---HHHHHHHHH
Confidence 556666554 4568999999999988 667777653
No 298
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=57.71 E-value=7.8 Score=24.57 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=20.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.+ ..+++
T Consensus 25 f~~~G~~~ts~~~IA~~aGvsk---~tlY~ 51 (211)
T 3bhq_A 25 FISKGYDGTSMEEIATKAGASK---QTVYK 51 (211)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHhCCCH---HHHHH
Confidence 34445 6789999999999988 66665
No 299
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=57.62 E-value=8.3 Score=20.50 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=18.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||..+|+++ ..+.|+.+
T Consensus 25 ~g~s~~~lA~~~gis~---~~i~~~e~ 48 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDR---SYVGGVER 48 (74)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHC
Confidence 4588899999999887 66666543
No 300
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=57.59 E-value=6.1 Score=26.88 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=25.5
Q ss_pred hHHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 51 PDVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 51 ~d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+.|.++ ..+.|+.+||+.+++++ ..|.|+++
T Consensus 9 ~~~i~~~~~~~~~~~~la~~~~~s~---~~l~r~f~ 41 (292)
T 1d5y_A 9 LIWLEGHLDQPLSLDNVAAKAGYSK---WHLQRMFK 41 (292)
T ss_dssp HHHHHTTSSSSCCCHHHHTTTSSCH---HHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 3445443 37899999999999999 88999876
No 301
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=57.46 E-value=4.3 Score=27.36 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.|..++|+.+++++ ..+.|.++-
T Consensus 26 ~~~s~s~aA~~L~isq---~avSr~I~~ 50 (230)
T 3cta_A 26 AYLTSSKLADMLGISQ---QSASRIIID 50 (230)
T ss_dssp EECCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 6789999999999998 888887764
No 302
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=57.33 E-value=8.3 Score=20.66 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=18.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||..+|+++ ..+.|+.+
T Consensus 22 ~g~s~~~lA~~~gis~---~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSE---NTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5688999999999887 66766653
No 303
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=57.22 E-value=7.9 Score=25.07 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=20.0
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.. ..+++
T Consensus 56 ~~~~G~~~~tv~~IA~~AGvs~---~t~Y~ 82 (229)
T 3bni_A 56 LDEVGYDALSTRAVALRADVPI---GSVYR 82 (229)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHhcChhhccHHHHHHHHCCCc---hhHHH
Confidence 44445 6799999999999988 66654
No 304
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=57.22 E-value=3.9 Score=25.23 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.5
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ..+|+.+||++.|+++
T Consensus 21 ~~~~G~~~~t~~~Ia~~agvs~ 42 (183)
T 1zk8_A 21 ADANGVQEVTLASLAQTLGVRS 42 (183)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHhcCccccCHHHHHHHcCCCc
Confidence 44434 5789999999999877
No 305
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=57.14 E-value=6.3 Score=25.03 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.+ ..+|+
T Consensus 25 ~~e~G~~~~s~~~IA~~agvs~---~t~Y~ 51 (198)
T 3cjd_A 25 IEAEGLASLRARELARQADCAV---GAIYT 51 (198)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH---HHHHH
T ss_pred HHhCChhhcCHHHHHHHhCCCc---cHHHH
Confidence 33334 6789999999999988 66655
No 306
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=57.03 E-value=4.4 Score=25.21 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=16.7
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ..+|+.+||++.|++.
T Consensus 29 ~~~~G~~~~t~~~Ia~~agvs~ 50 (211)
T 3him_A 29 FAAKGYGATTTREIAASLDMSP 50 (211)
T ss_dssp HHHHCSTTCCHHHHHHHTTCCT
T ss_pred HHHcCCCcCCHHHHHHHhCCCc
Confidence 34444 6789999999999977
No 307
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=56.92 E-value=6.5 Score=24.88 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=20.2
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
+.+.| ..+|+.+||++.|+.+ ..+++-
T Consensus 28 f~~~G~~~~s~~~IA~~agvs~---~t~Y~~ 55 (221)
T 3c2b_A 28 LVEGGEKALTTSGLARAANCSK---ESLYKW 55 (221)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHHH
T ss_pred HHhCCcccCCHHHHHHHhCCCH---HHHHHh
Confidence 33334 6689999999999988 666653
No 308
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=56.89 E-value=4 Score=25.07 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=17.4
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|+.+||++.|+++ ..+++
T Consensus 33 ~~~ti~~Ia~~agvs~---~t~Y~ 53 (156)
T 3ljl_A 33 DKMSYTTLSQQTGVSR---TGISH 53 (156)
T ss_dssp HHCCHHHHHHHHTCCH---HHHHH
T ss_pred hhcCHHHHHHHHCCCH---HHHHH
Confidence 4679999999999988 66665
No 309
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=56.82 E-value=8.1 Score=24.41 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=19.8
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.+ ..+++
T Consensus 23 f~~~G~~~~s~~~IA~~aGvs~---~t~Y~ 49 (210)
T 3vib_A 23 FYRKGIARTSLNEIAQAAGVTR---DALYW 49 (210)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHHCcCH---HHHHH
Confidence 44445 6789999999999987 55554
No 310
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=56.76 E-value=6.6 Score=24.90 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=19.7
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..+++
T Consensus 22 f~~~G~~~~s~~~IA~~AGvs~---gtlY~ 48 (203)
T 2np5_A 22 AAESGLEGASVREVAKRAGVSI---GAVQH 48 (203)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhChhhccHHHHHHHhCCCH---HHHHH
Confidence 44445 6789999999999987 65654
No 311
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=56.68 E-value=4 Score=27.45 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++|-.+||+.+|+.+ +.+.|+|+-
T Consensus 217 ~lt~~~lA~~lG~sr---~tvsR~l~~ 240 (260)
T 3kcc_A 217 KITRQEIGQIVGCSR---ETVGRILKM 240 (260)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 789999999999999 999999874
No 312
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=56.60 E-value=6.7 Score=24.80 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=20.0
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.. ..+++
T Consensus 16 f~~~G~~~~s~~~IA~~Agvs~---~t~Y~ 42 (212)
T 3rh2_A 16 FNEHGERTITTNHIAAHLDISP---GNLYY 42 (212)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCH---HHHHH
Confidence 44445 6789999999999988 66665
No 313
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=56.37 E-value=11 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=20.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.+ ..+++
T Consensus 20 ~~~~G~~~~tv~~Ia~~agvs~---~t~y~ 46 (213)
T 3ni7_A 20 AAHTSWEAVRLYDIAARLAVSL---DEIRL 46 (213)
T ss_dssp HHHSCSTTCCHHHHHHHTTSCH---HHHHH
T ss_pred HHHcCccccCHHHHHHHhCCCH---HHHHH
Confidence 45556 7899999999999987 66655
No 314
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=56.24 E-value=4.9 Score=25.11 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=16.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ...|+.+||++.|+.+
T Consensus 20 f~~~G~~~~s~~~IA~~aGvs~ 41 (178)
T 4hku_A 20 IYEKGMEKTTLYDIASNLNVTH 41 (178)
T ss_dssp HHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHhCcccccHHHHHHHhCcCH
Confidence 34445 6789999999999977
No 315
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=56.07 E-value=6.6 Score=24.79 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=23.9
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+|.+|.++ +.+.| ...|+.+||++.|+.. ..+++
T Consensus 16 ~Il~aA~~l-----f~~~Gy~~ts~~~IA~~agvs~---gtlY~ 51 (205)
T 1rkt_A 16 EILEAAKTV-----FKRKGFELTTMKDVVEESGFSR---GGVYL 51 (205)
T ss_dssp HHHHHHHHH-----HHHHCSTTCCHHHHHHHHTSCH---HHHHT
T ss_pred HHHHHHHHH-----HHHcCcccCCHHHHHHHHCCCc---chhhh
Confidence 445555542 34445 7899999999999987 55553
No 316
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=55.94 E-value=7.4 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=19.5
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.+ ..+++
T Consensus 29 ~~~~G~~~~s~~~IA~~agvs~---~t~Y~ 55 (216)
T 2oi8_A 29 IATAGASALSLNAIAKRMGMSG---PALYR 55 (216)
T ss_dssp HHHHCTTSCCHHHHHHHTTCCH---HHHHT
T ss_pred HHhcCcccCCHHHHHHHhCCCH---HHHHH
Confidence 44434 6789999999999987 55554
No 317
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=55.93 E-value=8.5 Score=24.98 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=24.4
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+.+|.++ +.+.| ..+|+.+||++.|+.+ ..+++
T Consensus 48 ~Il~aA~~l-----f~e~G~~~~t~~~IA~~aGvs~---~tlY~ 83 (236)
T 3q0w_A 48 AILATAENL-----LEDRPLADISVDDLAKGAGISR---PTFYF 83 (236)
T ss_dssp HHHHHHHHH-----HHHSCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHH-----HHHcCcccCCHHHHHHHhCCcH---HHHHH
Confidence 344555443 45444 5789999999999988 66665
No 318
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=55.86 E-value=7 Score=24.72 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=19.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.. ..+++
T Consensus 36 f~~~G~~~~t~~~IA~~agvs~---~t~Y~ 62 (214)
T 2zb9_A 36 LLTEGTAQLTFERVARVSGVSK---TTLYK 62 (214)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHHCCCH---HHHHH
Confidence 44434 5789999999999988 66655
No 319
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=55.24 E-value=2.5 Score=27.45 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=0.0
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
++|-.+||+.+|+.+ ..+.|+++-|
T Consensus 164 ~~t~~~lA~~lg~sr---~tvsR~l~~L 188 (213)
T 1o5l_A 164 PVTLEELSRLFGCAR---PALSRVFQEL 188 (213)
T ss_dssp ----------------------------
T ss_pred CCCHHHHHHHhCCCH---HHHHHHHHHH
Confidence 789999999999999 8899988754
No 320
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=55.23 E-value=7 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=19.2
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..+++
T Consensus 24 f~~~G~~~~s~~~IA~~aGvsk---gtlY~ 50 (219)
T 2w53_A 24 FHEHGVARTTLEMIGARAGYTR---GAVYW 50 (219)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH---HHHHT
T ss_pred HHHhCcccCCHHHHHHHhCCCc---hHHhh
Confidence 34445 6789999999999977 55543
No 321
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.81 E-value=9.4 Score=20.25 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=17.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
...|..|||..+|+++ ..+++.
T Consensus 30 ~g~s~~eIA~~lgis~---~tv~~~ 51 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPV---GTIRSR 51 (70)
T ss_dssp SCCCHHHHHHHHTSCH---HHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHH
Confidence 4589999999999988 555443
No 322
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=54.71 E-value=8.2 Score=21.09 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=17.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
..+|..|||..+|++. ..+.++.
T Consensus 14 ~glsq~~lA~~~gis~---~~i~~~e 36 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISR---QQLCNIE 36 (77)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHH
Confidence 4578999999999877 6666654
No 323
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=54.16 E-value=8.8 Score=25.01 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=24.2
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.+|.+|.++ +.+.| ...|+.+||++.|+++ ..+++
T Consensus 11 ~Il~AA~~l-----F~e~G~~~ts~~~IA~~AGvs~---~tlY~ 46 (235)
T 2fbq_A 11 RILDAAEQL-----FAEKGFAETSLRLITSKAGVNL---AAVNY 46 (235)
T ss_dssp HHHHHHHHH-----HHHHCSTTCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHHHHHHH-----HHHcCccccCHHHHHHHhCCCH---HHHHH
Confidence 445555442 34445 6799999999999987 65654
No 324
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=54.12 E-value=8.5 Score=22.12 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=18.6
Q ss_pred CCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 61 MTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.|..+||..+|+++ ..++|.++
T Consensus 39 ~s~~~iA~~~gIs~---sTl~rW~k 60 (87)
T 2elh_A 39 ESKASVARDIGVPE---STLRGWCK 60 (87)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCHHHHHHHHCcCH---HHHHHHHH
Confidence 68999999999988 88888764
No 325
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=54.07 E-value=8.7 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=18.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||..+|+++ ..+.++.+
T Consensus 22 ~gltq~elA~~~gis~---~~is~~E~ 45 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAK---SYLSSIER 45 (78)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 4588899999999887 77777654
No 326
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=53.90 E-value=2.7 Score=30.32 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred hCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 48 LGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 48 LgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..|...|... +++|..|||+.+++++ ..+.|.+..|
T Consensus 23 ~~iL~~l~~~-~~~t~~eLa~~l~vs~---~Tv~r~l~~L 58 (345)
T 2o0m_A 23 FQILRNIYWM-QPIGRRSLSETMGITE---RVLRTETDVL 58 (345)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 4566666653 7899999999999999 8888887654
No 327
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=53.86 E-value=9.5 Score=24.59 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=19.7
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.+ ..+++
T Consensus 27 f~~~G~~~~s~~~IA~~AGvs~---~tlY~ 53 (208)
T 3v6g_A 27 IARQGLGGLSHRRVAAEANVPV---GSTTY 53 (208)
T ss_dssp HHHHCTTCCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHhCCCc---hhHHH
Confidence 34434 6789999999999988 66654
No 328
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=53.77 E-value=9.8 Score=24.41 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|+.+||++.|+.. ..+++
T Consensus 22 f~~~Gy~~ts~~~IA~~AGvsk---gtlY~ 48 (215)
T 1ui5_A 22 FDRRGYESTTLSEIVAHAGVTK---GALYF 48 (215)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHhCCCc---hhhHh
Confidence 44445 7789999999999987 65654
No 329
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=53.69 E-value=15 Score=22.54 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=28.6
Q ss_pred HHHHHHhCchHHHHhCCCCCCHHHHHHhc------CCCCCChhhHHHHHhcC
Q 041968 42 LKCAVELGIPDVIHKHGQPMTLSQIASAL------DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 42 L~aaveLgI~d~L~~~~gp~S~~ELA~~~------~~~~~~~~~L~RlLR~L 87 (87)
++-.+++-|.-.|.+ +|.+--||++.+ ++++ ..|+++|+-|
T Consensus 8 ~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~---gtlY~~L~rL 54 (117)
T 4esf_A 8 LKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEVVE---GTVYTILVRL 54 (117)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTCCH---HHHHHHHHHH
T ss_pred HHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCCCc---cHHHHHHHHH
Confidence 334444555556663 799999999997 5666 8898888743
No 330
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=53.42 E-value=7.7 Score=25.35 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=20.1
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||+++|+.+ ..+|+
T Consensus 15 ~~~~G~~~~s~~~IA~~aGvs~---~tlY~ 41 (209)
T 3bqy_A 15 LNESGLDTLTMRRLAQAMDVQA---GALYR 41 (209)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH---HHHHH
T ss_pred HHhCCcccCCHHHHHHHhCCCc---chHHh
Confidence 33334 6789999999999988 66765
No 331
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=53.37 E-value=9 Score=21.20 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=19.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.|+.+
T Consensus 24 ~glsq~~lA~~~gis~---~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQ---ATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHHc
Confidence 4589999999999988 66776653
No 332
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=53.10 E-value=8.9 Score=21.48 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=19.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||+.+|+++ ..+.|+.+
T Consensus 30 ~glsq~elA~~~gis~---~~is~~e~ 53 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQ---PRVSDLMR 53 (83)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5689999999999887 66766653
No 333
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=53.04 E-value=9 Score=21.07 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=18.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|+|..+|+++ ..+.|+.+
T Consensus 26 ~gltq~elA~~~gis~---~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLGRPQ---SFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHC
Confidence 4589999999999887 66766643
No 334
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=52.96 E-value=8.1 Score=24.87 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=17.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|+.+||++.|+.. ..+++
T Consensus 47 ~~~t~~~IA~~aGvs~---~tlY~ 67 (217)
T 3hta_A 47 AGLSHRTVAAEADVPL---GSTTY 67 (217)
T ss_dssp GGCCHHHHHHHHTCCH---HHHHH
T ss_pred ccCCHHHHHHHcCCCc---chhhh
Confidence 5689999999999987 65654
No 335
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=52.94 E-value=11 Score=23.97 Aligned_cols=26 Identities=4% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|++. ..+++
T Consensus 33 ~~~~g~~~~tv~~Ia~~Agvs~---~t~Y~ 59 (185)
T 3o60_A 33 VEDRTFESISIKDLCEQARVSR---ATFYR 59 (185)
T ss_dssp HTTCCTTTCCHHHHHHHHTCCH---HHHHH
T ss_pred HhcCCcccCCHHHHHHHhCCCH---HHHHH
Confidence 35445 7899999999999987 66655
No 336
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=52.76 E-value=12 Score=25.36 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
-.++.+|.+ .+.+.| ..+|+.+||++.|+.+ ..+++
T Consensus 44 ~~Il~AA~~-----lf~e~G~~~~S~~~IA~~AGVs~---~tlY~ 80 (273)
T 3c07_A 44 ALILETAMR-----LFQERGYDRTTMRAIAQEAGVSV---GNAYY 80 (273)
T ss_dssp HHHHHHHHH-----HHHHTCSTTCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHHHHHHH-----HHHhCCccccCHHHHHHHHCCCH---HHHHH
Confidence 344455544 355555 7789999999999988 66665
No 337
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=52.74 E-value=7.6 Score=21.32 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.-++..|+|+.+|+.. ..++|+++
T Consensus 9 ~~l~~~eva~~lgvsr---stiy~~~~ 32 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGK---TFIYDRIK 32 (66)
T ss_dssp SEECHHHHHHHHSSCH---HHHHHHHH
T ss_pred cccCHHHHHHHHCcCH---HHHHHHHH
Confidence 5679999999999988 88998875
No 338
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=52.65 E-value=5.9 Score=24.98 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=16.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ...|+.+||++.|+.+
T Consensus 24 f~~~G~~~~s~~~IA~~agvs~ 45 (212)
T 2ras_A 24 VEERGGAGLTLSELAARAGISQ 45 (212)
T ss_dssp HHHHTSSCCCHHHHHHHHTSCH
T ss_pred HHHhCcccCcHHHHHHHhCCCH
Confidence 44445 7799999999999977
No 339
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=52.52 E-value=8.4 Score=24.67 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 18 f~~~G~~~~t~~~IA~~Agvs~---~t~Y~ 44 (228)
T 3nnr_A 18 FNDKGERNITTNHIAAHLAISP---GNLYY 44 (228)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhChhhcCHHHHHHHhCCCC---ccchh
Confidence 33334 6789999999999988 66665
No 340
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=52.29 E-value=5.9 Score=27.74 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=24.1
Q ss_pred hHHHHhCCCCC-CHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 51 PDVIHKHGQPM-TLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 51 ~d~L~~~~gp~-S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.+-..++.. |..|+|+.+|+++ +.++|+-|.
T Consensus 68 ~~~LLGg~~~yvT~~eVAe~aGv~~---e~~rr~wRa 101 (222)
T 2ev1_A 68 TRHLVGDDGTYVSAREISENYGVDL---ELLQRVQRA 101 (222)
T ss_dssp HHHHTTCCSCEECHHHHHHHHTCCH---HHHHHHHHH
T ss_pred HHHHhCCCcCcCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 34444222445 9999999999999 888888664
No 341
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=52.23 E-value=3.2 Score=25.63 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=14.0
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ..+|+.+||++.|+++
T Consensus 25 f~~~G~~~~t~~~IA~~agvs~ 46 (199)
T 3on2_A 25 LEKDGVDGLSLRQLAREAGVSH 46 (199)
T ss_dssp HHHHCGGGCCHHHHHHHTC---
T ss_pred HHhcChhhhhHHHHHHHhCCCh
Confidence 34334 5689999999999876
No 342
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=52.01 E-value=9.1 Score=22.70 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=20.6
Q ss_pred CCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 61 MTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
++..+||..+++++ ..+.+.++.|
T Consensus 21 ~~~t~La~~~~ls~---~~~~~~l~~L 44 (95)
T 1r7j_A 21 SPKTRIMYGANLSY---ALTGRYIKML 44 (95)
T ss_dssp BCHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred CCHHHHHHHhCcCH---HHHHHHHHHH
Confidence 89999999999999 8788777653
No 343
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=51.62 E-value=10 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||..+|+++ ..+.|+.+
T Consensus 23 ~glsq~~lA~~~gis~---~~i~~~e~ 46 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDR---TYISGIER 46 (82)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHhCcCH---HHHHHHHC
Confidence 5689999999999988 66766643
No 344
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=51.44 E-value=11 Score=20.76 Aligned_cols=24 Identities=8% Similarity=0.300 Sum_probs=17.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.++.+
T Consensus 24 ~gltq~~lA~~~gvs~---~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQ---SAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHhCcCH---HHHHHHHc
Confidence 4578889999999877 66666543
No 345
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=51.39 E-value=9.4 Score=25.03 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=21.0
Q ss_pred CCCHHHHHHhcCCCCCChh-hHHHHHhc
Q 041968 60 PMTLSQIASALDIQKNKAH-CIQRLMRI 86 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~-~L~RlLR~ 86 (87)
++|-.|||+.+|+.+ . .+.|+|+-
T Consensus 169 ~~t~~~lA~~lG~sr---~etvsR~l~~ 193 (238)
T 2bgc_A 169 NLTMQELGYSSGIAH---SSAVSRIISK 193 (238)
T ss_dssp CCCHHHHHHHTTCCC---HHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCh---HHHHHHHHHH
Confidence 789999999999988 6 78888764
No 346
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=51.36 E-value=7.1 Score=24.74 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCC
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
..+|.+|.+| +.+.| ...|+.+||++.|+.+
T Consensus 15 ~~Il~aA~~l-----f~~~G~~~~s~~~IA~~aGvsk 46 (200)
T 2hyj_A 15 GRILGRAAEI-----ASEEGLDGITIGRLAEELEMSK 46 (200)
T ss_dssp HHHHHHHHHH-----HHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHH-----HHHcCcccCCHHHHHHHhCCCh
Confidence 3345555443 33335 6789999999999977
No 347
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=51.15 E-value=10 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
..+|-.|||..+|+++ ..+.|+.
T Consensus 22 ~glsq~~lA~~~gis~---~~i~~~e 44 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQ---SDISKIE 44 (84)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHH
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHH
Confidence 4588999999999887 6666654
No 348
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=51.03 E-value=8.9 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ...|..+||++.|+.+ ..+++
T Consensus 22 f~~~G~~~~s~~~IA~~aGvs~---gtlY~ 48 (209)
T 2gfn_A 22 IAREGISAVTTRAVAEESGWST---GVLNH 48 (209)
T ss_dssp HHHHCGGGCCHHHHHHHHSSCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHHCCCc---chHHh
Confidence 34434 6789999999999987 65654
No 349
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=51.01 E-value=16 Score=22.91 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=18.8
Q ss_pred HHhCCCCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHGQPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.|-..|+.+||++.|+.+ ..+++
T Consensus 26 f~~~G~~~t~~~IA~~agvs~---~tlY~ 51 (196)
T 2qwt_A 26 FAAEGLGVPMDEIARRAGVGA---GTVYR 51 (196)
T ss_dssp HHHTCTTSCHHHHHHHTTSCH---HHHHH
T ss_pred HHhcCCCCCHHHHHHHhCCCH---HHHHH
Confidence 333333479999999999988 66654
No 350
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=50.86 E-value=9.1 Score=25.58 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 61 MTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.|..+||+.+|.++ ..+.|.||.+
T Consensus 53 ~t~eeiA~~lG~s~---s~V~~~LrLl 76 (178)
T 1r71_A 53 KKKGDIAKEIGKSP---AFITQHVTLL 76 (178)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHGGG
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 68999999999998 8899998864
No 351
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=50.82 E-value=9.2 Score=24.67 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=19.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.. ..+++
T Consensus 53 f~~~G~~~~t~~~IA~~Agvs~---~t~Y~ 79 (225)
T 2id3_A 53 LAADGFDALDLGEIARRAGVGK---TTVYR 79 (225)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhCcccCCHHHHHHHHCCCH---HHHHH
Confidence 44434 5789999999999988 66665
No 352
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=50.81 E-value=4.5 Score=24.99 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=18.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
...|+.+||++.|+.+ ..+++-
T Consensus 26 ~~~t~~~IA~~agvs~---~tlY~~ 47 (186)
T 2jj7_A 26 EGTSIQEIAKEAKVNV---AMASYY 47 (186)
T ss_dssp HHCCHHHHHHHHTSCH---HHHHHH
T ss_pred ccCCHHHHHHHhCCCh---hhhhhh
Confidence 4689999999999988 666653
No 353
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=50.78 E-value=9.3 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.320 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
-.++.+|.++ +.+.| ..+|+.+||++.|+.+ ..+|+
T Consensus 28 ~~Il~aA~~l-----~~~~G~~~~s~~~IA~~aGvs~---~tlY~ 64 (211)
T 3fiw_A 28 ETVITEALDL-----LDEVGLDGVSTRRLAKRLGVEQ---PSLYW 64 (211)
T ss_dssp HHHHHHHHHH-----HHHHCGGGCCHHHHHHHHTSCT---HHHHT
T ss_pred HHHHHHHHHH-----HHhcCcccCCHHHHHHHhCCCh---hHHHH
Confidence 3445555443 33334 5689999999999988 66654
No 354
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=50.76 E-value=13 Score=22.43 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=17.7
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
.+.|..|||..+|+++ ..+..+
T Consensus 38 e~~s~~EIA~~lgiS~---~tVr~~ 59 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTR---ERIRQI 59 (99)
T ss_pred CCCCHHHHHHHHCcCH---HHHHHH
Confidence 6899999999999988 544433
No 355
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=50.60 E-value=7.7 Score=24.79 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
-.+|.+|.++ +.+.| ...|+.+||++.|+.. ..+++
T Consensus 27 ~~Il~aA~~l-----f~e~G~~~~s~~~IA~~aGvsk---gtlY~ 63 (214)
T 2oer_A 27 ASILEAAVQV-----LASEGAQRFTTARVAERAGVSI---GSLYQ 63 (214)
T ss_dssp HHHHHHHHHC-----------CCCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHHH-----HHhhCcccccHHHHHHHhCCCC---chHHH
Confidence 4456666554 33335 6789999999999987 65654
No 356
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=50.55 E-value=11 Score=24.95 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=20.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.. ..+++
T Consensus 61 f~e~G~~~~Ti~~IA~~AGvs~---~t~Y~ 87 (260)
T 2of7_A 61 IRQQGYEATTVEQIAERAEVSP---STVLR 87 (260)
T ss_dssp HHHHCSTTCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHhCcccccHHHHHHHhCCCh---HHHHH
Confidence 44445 6789999999999988 77765
No 357
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=50.48 E-value=4.6 Score=24.80 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=17.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|+.+||++.|+++ ..+++
T Consensus 27 ~~~t~~~Ia~~agvs~---~t~Y~ 47 (195)
T 3pas_A 27 SATSVGKIAKAAGLSP---ATLYI 47 (195)
T ss_dssp HHCCHHHHHHHHTSCH---HHHHH
T ss_pred HhcCHHHHHHHhCCCc---hHHHH
Confidence 5689999999999988 66654
No 358
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=50.46 E-value=9.4 Score=25.24 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=20.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
...|..|||+.+|++. ..|+|-.+
T Consensus 47 ~~lTv~eIA~~LGIS~---~TLyrW~k 70 (155)
T 2ao9_A 47 EKRTQDEMANELGINR---TTLWEWRT 70 (155)
T ss_dssp CCCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHHH
Confidence 4689999999999998 88887443
No 359
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=50.39 E-value=11 Score=24.60 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=19.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+++ ..+++
T Consensus 36 f~~~G~~~~s~~~IA~~agvs~---~tlY~ 62 (231)
T 2zcx_A 36 GTERGIREITLTDIAATVGMHK---SALLR 62 (231)
T ss_dssp HHHHCSTTCCHHHHHHHHTSCH---HHHHH
T ss_pred HHhCCcccCCHHHHHHHhCCCH---HHHHH
Confidence 33334 6789999999999988 65654
No 360
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=50.32 E-value=12 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
-.++.+|+++ +.+.| ..+|+.+||+++|+.+ ..+|+-
T Consensus 32 ~~Il~aA~~l-----~~~~G~~~~s~~~IA~~aGvs~---~tlY~h 69 (241)
T 2hxi_A 32 EQILDAAAEL-----LLAGDAETFSVRKLAASLGTDS---SSLYRH 69 (241)
T ss_dssp HHHHHHHHHH-----HSSSSCCCCCHHHHHHHTTSCH---HHHHHH
T ss_pred HHHHHHHHHH-----HHhcCcccCCHHHHHHHhCcCH---HHHHHH
Confidence 3455555543 44444 6799999999999988 767663
No 361
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=50.26 E-value=11 Score=27.49 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHhCCCCCCHHHHHHhc--CCCCCChhhHHHHHhcC
Q 041968 53 VIHKHGQPMTLSQIASAL--DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 53 ~L~~~~gp~S~~ELA~~~--~~~~~~~~~L~RlLR~L 87 (87)
.|.. ++|.++.+||+.. ++++ ..++|-|..|
T Consensus 30 yl~~-~~pV~s~~La~~~~l~VS~---aTIRrDL~~L 62 (338)
T 1stz_A 30 YIEN-KKPVSSQRVLEVSNIEFSS---ATIRNDMKKL 62 (338)
T ss_dssp HHHH-CSCBCHHHHHHHSCCCSCH---HHHHHHHHHH
T ss_pred HHHc-CCCccHHHHHHHhCCCCCH---HHHHHHHHHH
Confidence 4554 6999999999999 7777 8899988643
No 362
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=50.17 E-value=4.8 Score=25.03 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=17.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|+.+||++.|++. ..+++
T Consensus 39 ~~~t~~~Ia~~agvs~---~t~Y~ 59 (203)
T 3mnl_A 39 EAVQMRAVADRADVAV---GTLYR 59 (203)
T ss_dssp HHCCHHHHHHHHTCCH---HHHHH
T ss_pred ccCCHHHHHHHcCCCh---hHHHH
Confidence 4579999999999988 66655
No 363
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=50.16 E-value=6.7 Score=26.39 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.5
Q ss_pred CchHHHHhCCCCCCHHHHHHhcCCCC
Q 041968 49 GIPDVIHKHGQPMTLSQIASALDIQK 74 (87)
Q Consensus 49 gI~d~L~~~~gp~S~~ELA~~~~~~~ 74 (87)
.|.+.|. .|+.|+.+||..+|++-
T Consensus 15 ~ILE~Lk--~G~~~t~~Iak~LGlSh 38 (165)
T 2vxz_A 15 DILALLA--DGCKTTSLIQQRLGLSH 38 (165)
T ss_dssp HHHHHHT--TCCEEHHHHHHHHTCCH
T ss_pred HHHHHHH--hCCccHHHHHHHhCCcH
Confidence 4567777 59999999999999987
No 364
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=50.04 E-value=9.9 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|..+||+++|+.+ ..+|+
T Consensus 29 ~~~~G~~~~s~~~IA~~aGvs~---~tlY~ 55 (237)
T 2hxo_A 29 LDTVGERGLTFRALAERLATGP---GAIYW 55 (237)
T ss_dssp HHHTTTTTCCHHHHHHHHTSCG---GGGGG
T ss_pred HHhcCcccCCHHHHHHHHCCCh---HHHHH
Confidence 44444 6789999999999987 54443
No 365
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=50.00 E-value=11 Score=21.51 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=19.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||+.+|+++ ..+.|+.+
T Consensus 21 ~glsq~~lA~~~gis~---~~is~~e~ 44 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSP---QTFNTWCK 44 (94)
T ss_dssp SSSCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHh
Confidence 5689999999999987 66766653
No 366
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=49.91 E-value=7.2 Score=25.61 Aligned_cols=21 Identities=14% Similarity=0.408 Sum_probs=16.7
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ..+|+.+||++.|+..
T Consensus 59 f~~~G~~~~t~~~IA~~aGvs~ 80 (245)
T 3aqt_A 59 MAERGVDNVGIAEITEGANIGT 80 (245)
T ss_dssp HHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHhcCcccCcHHHHHHHhCCCh
Confidence 44434 5789999999999987
No 367
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=49.80 E-value=11 Score=21.40 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..+||..+|+++ ..+.++.+
T Consensus 20 ~gltq~~lA~~~gis~---~~is~~e~ 43 (94)
T 2ict_A 20 LNVSLREFARAMEIAP---STASRLLT 43 (94)
T ss_dssp HTCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHHc
Confidence 3478889999999887 66666543
No 368
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=49.64 E-value=9.4 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=20.0
Q ss_pred HHhC-C-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKH-G-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~-~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+. | ...|+.+||+++|+.+ ..+++
T Consensus 18 ~~~~~G~~~~s~~~IA~~aGvs~---~tlY~ 45 (220)
T 1z0x_A 18 LEKSPTLEQLSMRKVAKQLGVQA---PAIYW 45 (220)
T ss_dssp HHHSCCGGGCCHHHHHHHHTSCH---HHHHT
T ss_pred HHhcCCcccCCHHHHHHHcCCCH---HHHHH
Confidence 4554 4 5689999999999988 66654
No 369
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=49.58 E-value=5 Score=24.84 Aligned_cols=22 Identities=14% Similarity=0.142 Sum_probs=17.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
...|+.+||++.|+.. ..+++-
T Consensus 33 ~~~t~~~IA~~agvs~---~t~Y~~ 54 (191)
T 4aci_A 33 EGATVRRLEEATGKSR---GAIFHH 54 (191)
T ss_dssp HHCCHHHHHHHHTCCH---HHHHHH
T ss_pred ccCCHHHHHHHHCCCc---hHHHHH
Confidence 4579999999999988 666653
No 370
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=49.31 E-value=13 Score=23.49 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=17.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+.+ ..+++
T Consensus 38 ~~~s~~~IA~~aGvs~---~tlY~ 58 (215)
T 2hku_A 38 EGVPITQICAAAGAHP---NQVTY 58 (215)
T ss_dssp TTSCHHHHHHHHTCCH---HHHHH
T ss_pred CCcCHHHHHHHhCCCH---HHHHH
Confidence 6789999999999988 66665
No 371
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=49.02 E-value=14 Score=22.70 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=23.3
Q ss_pred HHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+.+|.++ +.+. ...|+.+||++.|+.. ..+++
T Consensus 18 ~Il~aA~~l-----f~~~-~~~t~~~Ia~~agvs~---~t~Y~ 51 (190)
T 2v57_A 18 AILDAAMLV-----LADH-PTAALGDIAAAAGVGR---STVHR 51 (190)
T ss_dssp HHHHHHHHH-----HTTC-TTCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHH-----HHHc-CCCCHHHHHHHhCCCH---HHHHH
Confidence 344455443 3444 6789999999999988 66654
No 372
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=48.97 E-value=11 Score=21.95 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=19.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||+.+|+++ ..+.|+.+
T Consensus 36 ~glTq~eLA~~~GiS~---~tis~iE~ 59 (88)
T 3t76_A 36 RDMKKGELREAVGVSK---STFAKLGK 59 (88)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5689999999999988 77777643
No 373
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=48.96 E-value=5.9 Score=24.85 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=16.9
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ..+|+.+||++.|+..
T Consensus 32 f~~~G~~~~t~~~IA~~agvs~ 53 (216)
T 3qqa_A 32 FLTKGYQETSLSDIIKLSGGSY 53 (216)
T ss_dssp HHHTCTTTCCHHHHHHHHTTSC
T ss_pred HHHcChhhCCHHHHHHHhCCCH
Confidence 44445 6789999999999876
No 374
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=48.90 E-value=7 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.4
Q ss_pred CCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 61 MTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+|..|+|+.+|+++ ..|+|..+
T Consensus 3 lt~~e~a~~LgvS~---~Tl~rw~~ 24 (68)
T 1j9i_A 3 VNKKQLADIFGASI---RTIQNWQE 24 (68)
T ss_dssp EEHHHHHHHTTCCH---HHHHHHTT
T ss_pred cCHHHHHHHHCcCH---HHHHHHHH
Confidence 57889999999999 88888653
No 375
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=48.89 E-value=13 Score=20.98 Aligned_cols=16 Identities=38% Similarity=0.409 Sum_probs=13.7
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||+.+|+.+
T Consensus 35 ~g~s~~eIA~~l~is~ 50 (82)
T 1je8_A 35 QGLPNKMIARRLDITE 50 (82)
T ss_dssp TTCCHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 3479999999999987
No 376
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=48.79 E-value=1.3 Score=28.42 Aligned_cols=27 Identities=7% Similarity=0.220 Sum_probs=20.8
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCC
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQK 74 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~ 74 (87)
+..|.+.|.. |+.+|..|||+.+|+++
T Consensus 15 ~~~Il~~l~~-~~~ls~~eLa~~lgvSr 41 (163)
T 2gqq_A 15 DRNILNELQK-DGRISNVELSKRVGLSP 41 (163)
T ss_dssp HHHHHHHHHH-CSSCCTTGGGTSSSCCT
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCcCH
Confidence 4455665665 57889999999999976
No 377
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=48.76 E-value=13 Score=19.56 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=17.6
Q ss_pred CCCCHHHHHHhcC--CCCCChhhHHHHH
Q 041968 59 QPMTLSQIASALD--IQKNKAHCIQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~--~~~~~~~~L~RlL 84 (87)
..+|..|+|..+| +++ ..+.++.
T Consensus 20 ~glsq~~lA~~~g~~is~---~~i~~~e 44 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKA---VVVGSYE 44 (71)
T ss_dssp TTCCHHHHHHHTTTSSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCH---HHHHHHH
Confidence 4588999999999 777 6666654
No 378
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=48.69 E-value=11 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 40 MSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 40 ~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..|.+|.++ +.+.| ..+|+.+||++.|+.+ ..+++
T Consensus 47 ~Il~AA~~l-----f~~~G~~~~t~~~IA~~aGvs~---~tlY~ 82 (255)
T 3g1o_A 47 AILATAENL-----LEDRPLADISVDDLAKGAGISR---PTFYF 82 (255)
T ss_dssp HHHHHHHHH-----HTTSCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHHHHHHH-----HHHcCCccCcHHHHHHHhCCCH---HHHHH
Confidence 455555543 45545 5789999999999988 66655
No 379
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=48.64 E-value=10 Score=21.91 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=19.5
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|+.++|..+|+++ ..++|-++
T Consensus 23 g~s~~~ia~~~gIs~---~tl~rW~~ 45 (97)
T 2jn6_A 23 GASLQQIANDLGINR---VTLKNWII 45 (97)
T ss_dssp GSCHHHHHHHHTSCH---HHHHHHHH
T ss_pred CChHHHHHHHHCcCH---HHHHHHHH
Confidence 579999999999988 88888764
No 380
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=48.50 E-value=8 Score=25.00 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=16.5
Q ss_pred HHhCC-CCCCHHHHHHhcCCCC
Q 041968 54 IHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
+.+.| ..+|+.+||++.|+..
T Consensus 43 f~~~G~~~~t~~~IA~~Agvs~ 64 (230)
T 2iai_A 43 FIERGYDGTSMEHLSKAAGISK 64 (230)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH
T ss_pred HHHcCccccCHHHHHHHHCCCh
Confidence 33434 6789999999999877
No 381
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=48.45 E-value=14 Score=25.50 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=20.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+..|..|||+..|++. ..+.|+|+
T Consensus 9 ~~~ti~diA~~agVS~---~TVSr~Ln 32 (344)
T 3kjx_A 9 RPLTLRDVSEASGVSE---MTVSRVLR 32 (344)
T ss_dssp -CCCHHHHHHHHCCCS---HHHHHHHT
T ss_pred CCCCHHHHHHHHCCCH---HHHHHHHc
Confidence 6789999999999999 88988885
No 382
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=47.76 E-value=3.7 Score=25.49 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=16.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQ 81 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~ 81 (87)
..+|+.+||++.|+++ ..++
T Consensus 22 ~~~ti~~IA~~agvs~---~t~Y 41 (189)
T 3geu_A 22 DGTTLDDIAKSVNIKK---ASLY 41 (189)
T ss_dssp HHCCHHHHHHHTTCCH---HHHT
T ss_pred ccCCHHHHHHHhCCCH---HHHH
Confidence 5689999999999987 5544
No 383
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=47.66 E-value=16 Score=21.27 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=18.4
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCC
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQK 74 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~ 74 (87)
+..|+..+. ...|..|||..+++.+
T Consensus 34 E~~Vl~l~~---~G~s~~eIA~~L~iS~ 58 (90)
T 3ulq_B 34 ECLILQEVE---KGFTNQEIADALHLSK 58 (90)
T ss_dssp HHHHHHHHH---TTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHH---cCCCHHHHHHHHCcCH
Confidence 445555565 3578999999999877
No 384
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=47.57 E-value=5.6 Score=29.16 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=27.1
Q ss_pred hCchHHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 48 LGIPDVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 48 LgI~d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
..|...|.+. ++++|..|||+.+++++ ..+.|++.-
T Consensus 407 ~~vl~~l~~~~~~~~~~~~l~~~~~~~~---~~~t~~~~~ 443 (487)
T 1hsj_A 407 IYILNHILRSESNEISSKEIAKCSEFKP---YYLTKALQK 443 (487)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCCCH---HHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 4455566653 27899999999999999 778777753
No 385
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=47.48 E-value=5.6 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=17.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+++ ..+++
T Consensus 33 ~~~t~~~Ia~~agvs~---~t~Y~ 53 (215)
T 3e7q_A 33 QGASVRKICAEAGVSV---GLINH 53 (215)
T ss_dssp HHCCHHHHHHHHTCCH---HHHHH
T ss_pred ccCCHHHHHHHhCCCH---HHHHH
Confidence 5689999999999988 66654
No 386
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=47.44 E-value=6 Score=27.50 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=25.8
Q ss_pred hCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 48 LGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 48 LgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+...|.+.+ +++|..|||+.+++++ ..+.|++.
T Consensus 37 ~~vL~~L~~~~~~~~~~~el~~~l~~~~---~t~t~~l~ 72 (250)
T 1p4x_A 37 FILLTYLFHQQENTLPFKKIVSDLCYKQ---SDLVQHIK 72 (250)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSSCG---GGTHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCCH---hhHHHHHH
Confidence 34555666543 6899999999999998 66666654
No 387
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=47.37 E-value=5.6 Score=24.80 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+++ ..+++
T Consensus 27 ~~~t~~~IA~~agvs~---~t~Y~ 47 (195)
T 3frq_A 27 IEFTLSGVAKEVGLSR---AALIQ 47 (195)
T ss_dssp HHCCHHHHHHHHTCCH---HHHHH
T ss_pred ccCCHHHHHHHhCCCH---HHHHH
Confidence 4589999999999988 66655
No 388
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=47.36 E-value=7.4 Score=24.57 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.5
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+.. ..+++
T Consensus 24 ~~~s~~~IA~~Agvsk---gtlY~ 44 (202)
T 2id6_A 24 DRATTDEIAEKAGVAK---GLIFH 44 (202)
T ss_dssp HHCCHHHHHHHHTCCT---HHHHH
T ss_pred ccCCHHHHHHHhCCCH---HHHHH
Confidence 5689999999999988 66655
No 389
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=47.26 E-value=8.1 Score=24.97 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCchHHHHhCC-CCCCHHHHHHhcCCCC
Q 041968 39 SMSLKCAVELGIPDVIHKHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 39 ~~aL~aaveLgI~d~L~~~~-gp~S~~ELA~~~~~~~ 74 (87)
...|.+|.++ +.+.| ...|+.+||++.|+.+
T Consensus 38 ~~Il~AA~~l-----f~~~G~~~~s~~~IA~~AGvs~ 69 (237)
T 3kkd_A 38 QAILDAAMRL-----IVRDGVRAVRHRAVAAEAQVPL 69 (237)
T ss_dssp HHHHHHHHHH-----HHHHCGGGCCHHHHHHHHTSCT
T ss_pred HHHHHHHHHH-----HHhcChhhcCHHHHHHHhCCCh
Confidence 4455555543 44445 6789999999999987
No 390
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=47.23 E-value=12 Score=20.89 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=18.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.|+.+
T Consensus 29 ~glsq~~lA~~~gis~---~~is~~e~ 52 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQ---SGVGALFN 52 (92)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 3578899999999877 66666643
No 391
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=47.10 E-value=14 Score=21.16 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.6
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||+.+|+++
T Consensus 52 ~g~s~~eIA~~lgis~ 67 (92)
T 3hug_A 52 RGWSTAQIATDLGIAE 67 (92)
T ss_dssp SCCCHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 5689999999999987
No 392
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=46.79 E-value=9.2 Score=24.57 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=16.0
Q ss_pred CCCHHHHHHhcCCCCCChhhHHH
Q 041968 60 PMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.-|++|||+++|+++ ..|..
T Consensus 95 adTleeLA~~~gid~---~~L~~ 114 (160)
T 2lfc_A 95 KGSLESAAEQAGIVV---DELVQ 114 (160)
T ss_dssp CSSHHHHHHHHTCCH---HHHHH
T ss_pred cCCHHHHHHHhCCCH---HHHHH
Confidence 359999999999998 65543
No 393
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=46.56 E-value=5.5 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+.+ ..+++
T Consensus 37 ~~~s~~~IA~~aGvs~---~tlY~ 57 (212)
T 3loc_A 37 HGTRLEQIAELAGVSK---TNLLY 57 (212)
T ss_dssp HHCCHHHHHHHHTSCH---HHHHH
T ss_pred ccCCHHHHHHHHCcCH---HHHhh
Confidence 4579999999999988 66654
No 394
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=45.52 E-value=13 Score=26.58 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.+.|+.++|+.+|+++ ..|.|+++
T Consensus 320 ~~~~~~~~a~~~~~s~---~~l~r~f~ 343 (412)
T 4fe7_A 320 KGIKVDQVLDAVGISR---SNLEKRFK 343 (412)
T ss_dssp GTCCHHHHHHHTTCCH---HHHHHHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 7899999999999999 99999876
No 395
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=45.48 E-value=12 Score=25.06 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=18.7
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|+.+||+++|+.+ ..+|+-
T Consensus 25 ~~~S~r~IA~~aGvs~---~tlY~h 46 (234)
T 2opt_A 25 DALSMRRLAQELKTGH---ASLYAH 46 (234)
T ss_dssp GGCCHHHHHHHHTCCH---HHHHHH
T ss_pred cccCHHHHHHHHCCCh---hHHHHH
Confidence 5789999999999988 777764
No 396
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=45.40 E-value=11 Score=23.54 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=15.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|+.+||++.|++. ..+++
T Consensus 44 ~~~t~~~Ia~~agvs~---~t~Y~ 64 (212)
T 3nxc_A 44 QRITTAKLAASVGVSE---AALYR 64 (212)
T ss_dssp --CCHHHHHHHTTSCH---HHHHT
T ss_pred hhcCHHHHHHHhCCCh---hHHHH
Confidence 6799999999999987 55543
No 397
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=45.35 E-value=25 Score=21.31 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=29.3
Q ss_pred HHHHHHHhCchHHHHhCCCCCCHHHHHHhc--------CCCCCChhhHHHHHhcC
Q 041968 41 SLKCAVELGIPDVIHKHGQPMTLSQIASAL--------DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 41 aL~aaveLgI~d~L~~~~gp~S~~ELA~~~--------~~~~~~~~~L~RlLR~L 87 (87)
.++-..++-|.-.|.+ +|.+--||.+.+ ++++ ..++++|+-|
T Consensus 8 ~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i~~---gtly~~L~rL 57 (116)
T 3f8b_A 8 MLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMELNE---ATLYTIFKRL 57 (116)
T ss_dssp HHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCCCH---HHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCCCc---chHHHHHHHH
Confidence 3444455555666763 799999999887 4556 8898888743
No 398
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=45.26 E-value=11 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=25.4
Q ss_pred CchHHHHhC-CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 49 GIPDVIHKH-GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 49 gI~d~L~~~-~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.|.+.|.++ +.+.|..|||+.+|++. ..+.+-++
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr---~aV~k~i~ 41 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISR---TAVKKVID 41 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCH---HHHHHHHH
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCH---HHHHHHHH
Confidence 467777543 46999999999999987 66665554
No 399
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=45.20 E-value=24 Score=20.46 Aligned_cols=31 Identities=6% Similarity=0.104 Sum_probs=22.6
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
|-+.|...+|.+ .+.|+.+|++. ..|+|-|+
T Consensus 56 i~~aL~~~~gn~--~~aA~~LGIsr---~tL~rklk 86 (91)
T 1ntc_A 56 LTTALRHTQGHK--QEAARLLGWGA---ATLTAKLK 86 (91)
T ss_dssp HHHHHHHTTTCT--THHHHHTTCCH---HHHHHHHH
T ss_pred HHHHHHHhCCCH--HHHHHHHCcCH---HHHHHHHH
Confidence 344566555544 47899999999 88998876
No 400
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=44.73 E-value=10 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.-+|+.|.|+.+|+.. ..++||.+
T Consensus 15 ~~LTi~EaAeylgIg~---~~l~~L~~ 38 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGE---NKLRRLAE 38 (70)
T ss_dssp SEEEHHHHHHHTCSCH---HHHHHHHH
T ss_pred ceeCHHHHHHHHCcCH---HHHHHHHH
Confidence 5679999999999998 88888875
No 401
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=44.59 E-value=11 Score=25.40 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|+.+||+++|+.+ ..+|+
T Consensus 38 ~~~S~~~IA~~aGvs~---~tlY~ 58 (243)
T 2g7l_A 38 EKVTMRRLAQELDTGP---ASLYV 58 (243)
T ss_dssp SSCCHHHHHHHTTSCH---HHHTT
T ss_pred hhcCHHHHHHHHCCCh---hHHHH
Confidence 6789999999999987 55543
No 402
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=44.16 E-value=14 Score=22.07 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.7
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.++.+
T Consensus 26 ~gltq~eLA~~lGis~---~~is~ie~ 49 (104)
T 3trb_A 26 DKMSANQLAKHLAIPT---NRVTAILN 49 (104)
T ss_dssp TSCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5689999999999988 77777654
No 403
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=44.09 E-value=13 Score=25.51 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=17.4
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|..+||+++|+.+ ..+|+
T Consensus 46 ~~~Smr~IA~~aGVs~---~tlY~ 66 (267)
T 2y2z_A 46 EAASMRRVAAELGAGT---MSLYY 66 (267)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHT
T ss_pred ccCCHHHHHHHhCCCH---HHHHH
Confidence 6789999999999987 65654
No 404
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=44.08 E-value=9.1 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..-+|+.|.|+.+|++. ..+++++|
T Consensus 29 ~~~LTv~EVAe~LgVs~---srV~~LIr 53 (148)
T 2kfs_A 29 EPTYDLPRVAELLGVPV---SKVAQQLR 53 (148)
T ss_dssp SCEEEHHHHHHHHTCCH---HHHHHHHH
T ss_pred CceEcHHHHHHHhCCCH---HHHHHHHH
Confidence 36789999999999999 88999886
No 405
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=44.02 E-value=16 Score=24.15 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHhcC--CCCCChhhHHHHHh
Q 041968 58 GQPMTLSQIASALD--IQKNKAHCIQRLMR 85 (87)
Q Consensus 58 ~gp~S~~ELA~~~~--~~~~~~~~L~RlLR 85 (87)
+.|+|..+||+.++ +++ ..+..+|.
T Consensus 20 ~~pvs~~~La~~~~~~~~~---~~v~~~l~ 46 (162)
T 1t6s_A 20 EEPVNLQTLSQITAHKFTP---SELQEAVD 46 (162)
T ss_dssp SSCBCHHHHHHHTTCCCCH---HHHHHHHH
T ss_pred CCCCCHHHHHHHhCcCCCH---HHHHHHHH
Confidence 68999999999999 766 55555543
No 406
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=43.90 E-value=12 Score=25.86 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=25.0
Q ss_pred chHHHHh-CCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 50 IPDVIHK-HGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 50 I~d~L~~-~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+...+.+ .+++.+..++|+.+|.+. ..++|.++
T Consensus 268 ~l~~l~~~~~~~~~~~~~a~~lg~~~---~tl~~~l~ 301 (338)
T 3pfi_A 268 YLELLTAAKQKPIGLASIAAALSEDE---NTIEDVIE 301 (338)
T ss_dssp HHHHHHHSCSCCBCHHHHHHHTTCCH---HHHHHTTH
T ss_pred HHHHHHHhcCCCchHHHHHHHhCCCH---HHHHHHHh
Confidence 3344443 347788999999999998 88888776
No 407
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=43.85 E-value=11 Score=25.68 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=23.8
Q ss_pred hCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 48 LGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 48 LgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
+...+.|.+.| .-+|..|||+.+|++| ..++|=
T Consensus 20 ~r~l~~l~~~g~~~iss~~l~~~~~~~~---~~iRkd 53 (215)
T 2vt3_A 20 YRFLKNLHASGKQRVSSAELSDAVKVDS---ATIRRD 53 (215)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHCCCH---HHHHHH
T ss_pred HHHHHHHHHcCCcEECHHHHHHHhCCCH---HHeech
Confidence 34445565555 5679999999999999 666653
No 408
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=43.76 E-value=11 Score=25.89 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=23.9
Q ss_pred CchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 49 GIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 49 gI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
...+.|.+.| .-+|..|||+.+|++| ..++|=|
T Consensus 20 r~l~~l~~~g~~~isS~ela~~~gv~~---~qiRkDl 53 (212)
T 3keo_A 20 RIFKRFNTDGIEKASSKQIADALGIDS---ATVRRDF 53 (212)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHTSCH---HHHHHHH
T ss_pred HHHHHHHHCCCeEECHHHHHHHHCCCH---HHHHHHH
Confidence 3444555555 6779999999999999 6666633
No 409
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=43.72 E-value=14 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=21.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
...|..+||+++|+++ ..+.|+++-
T Consensus 50 ~~ps~~~LA~~~~~s~---~~v~~~L~~ 74 (135)
T 2v79_A 50 YFPTPNQLQEGMSISV---EECTNRLRM 74 (135)
T ss_dssp CSCCHHHHHTTSSSCH---HHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 5579999999999999 778777754
No 410
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=43.70 E-value=15 Score=21.27 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=17.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||..+|+++ ..+.|+.+
T Consensus 30 ~gltq~~lA~~~gis~---~~is~~e~ 53 (104)
T 3cec_A 30 LDINTANFAEILGVSN---QTIQEVIN 53 (104)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 3578889999998877 66666543
No 411
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=43.42 E-value=6.8 Score=25.06 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=17.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+.. ..+++
T Consensus 22 ~~~s~~~IA~~AGvsk---gtlY~ 42 (208)
T 2g3b_A 22 RGLRVNDVAEVAGVSP---GLLYY 42 (208)
T ss_dssp HHCCHHHHHHHHTSCH---HHHHH
T ss_pred ccCCHHHHHHHhCCCH---HHHHH
Confidence 5689999999999987 66654
No 412
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=43.23 E-value=21 Score=20.73 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=18.2
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCC
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQK 74 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~ 74 (87)
+..|+..+. ...|..|||+.+|+.+
T Consensus 32 e~~vl~l~~---~g~s~~eIA~~l~is~ 56 (95)
T 3c57_A 32 ERTLLGLLS---EGLTNKQIADRMFLAE 56 (95)
T ss_dssp HHHHHHHHH---TTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHH---cCCCHHHHHHHHCcCH
Confidence 444555443 4589999999999987
No 413
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=42.81 E-value=15 Score=20.12 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.9
Q ss_pred CHHHHHHhcCCCCCChhhHHHHHh
Q 041968 62 TLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 62 S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
|-.|||+.+|+++ ..+.++.+
T Consensus 13 sq~~lA~~lgvs~---~~is~~e~ 33 (79)
T 3bd1_A 13 SVSALAASLGVRQ---SAISNWRA 33 (79)
T ss_dssp SHHHHHHHHTCCH---HHHHHHHH
T ss_pred CHHHHHHHHCCCH---HHHHHHHH
Confidence 8899999999988 76766643
No 414
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=42.79 E-value=18 Score=21.00 Aligned_cols=23 Identities=13% Similarity=0.454 Sum_probs=18.9
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..+||..+|+++ ..++|.++
T Consensus 33 g~s~~~ia~~lgis~---~Tv~~w~~ 55 (128)
T 1pdn_C 33 GIRPCVISRQLRVSH---GCVSKILN 55 (128)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHH
Confidence 368999999999988 77887765
No 415
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=42.57 E-value=23 Score=21.22 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=17.4
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
|..+..++|...|+++ ..|+|+++
T Consensus 24 g~~~~~~~A~~~gvs~---stl~~~~~ 47 (131)
T 1hlv_A 24 PDLRKGEIARRFNIPP---STLSTILK 47 (131)
T ss_dssp TTSCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCcHHHHHHHhCCCH---HHHHHHHh
Confidence 4455568888888877 77777765
No 416
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=42.56 E-value=39 Score=18.07 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=18.2
Q ss_pred CHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 62 TLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 62 S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..+.|+.+|++. ..|+|-|+-
T Consensus 35 n~~~aA~~LGIsr---~tL~rklkk 56 (61)
T 1g2h_A 35 STRKLAQRLGVSH---TAIANKLKQ 56 (61)
T ss_dssp SHHHHHHHTTSCT---HHHHHHHHT
T ss_pred CHHHHHHHhCCCH---HHHHHHHHH
Confidence 5678899999999 888888763
No 417
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=42.50 E-value=20 Score=19.50 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=17.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|-.|+|+.+|+++ ..+.|+
T Consensus 23 ~gltq~elA~~~gvs~---~tis~~ 44 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGV---NAFSRY 44 (73)
T ss_dssp TTCCHHHHHHHHCSCT---THHHHH
T ss_pred cCCCHHHHHHHhCcCH---HHHHHH
Confidence 5689999999999988 666554
No 418
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=42.38 E-value=7.9 Score=24.96 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+.. ..+++
T Consensus 49 ~~~s~~~IA~~aGvs~---~tlY~ 69 (226)
T 2pz9_A 49 AGARVDRIAKQARTSK---ERVYA 69 (226)
T ss_dssp HHCCHHHHHHHTTSCH---HHHHH
T ss_pred ccCcHHHHHHHHCCCh---HHHHH
Confidence 4579999999999988 66655
No 419
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=42.29 E-value=5.5 Score=25.29 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=0.4
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|++. ..+++
T Consensus 43 ~~~~G~~~~ti~~IA~~agvs~---~t~Y~ 69 (212)
T 2np3_A 43 FAERGFDATSLRRIAETAGVDQ---SLVHH 69 (212)
T ss_dssp C-----------------------------
T ss_pred HHHcCcccccHHHHHHHcCCCH---HHHHH
Confidence 44444 6789999999999877 44543
No 420
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=42.24 E-value=4.6 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=14.1
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
..+|+.+||++.|+.+
T Consensus 30 ~~~ti~~IA~~agvs~ 45 (204)
T 3eup_A 30 AGTSLTDLTEATNLTK 45 (204)
T ss_dssp HHCCHHHHHHHHTCCH
T ss_pred ccCCHHHHHHHhCCCc
Confidence 5679999999999977
No 421
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=42.15 E-value=21 Score=19.32 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.1
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||..+|+.+
T Consensus 30 ~g~s~~eIA~~l~is~ 45 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISP 45 (79)
T ss_dssp TTCCHHHHHHHTTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 4589999999999987
No 422
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=41.96 E-value=18 Score=21.58 Aligned_cols=23 Identities=17% Similarity=0.595 Sum_probs=19.5
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..+||..+|++. ..++|.++
T Consensus 22 G~s~~~ia~~lgis~---~Tv~r~~~ 44 (141)
T 1u78_A 22 NVSLHEMSRKISRSR---HCIRVYLK 44 (141)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHH
Confidence 378999999999988 88888765
No 423
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=41.86 E-value=18 Score=21.77 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=14.7
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||+.+|+++
T Consensus 123 ~g~s~~EIA~~lgis~ 138 (164)
T 3mzy_A 123 RGYSYREIATILSKNL 138 (164)
T ss_dssp TTCCHHHHHHHHTCCH
T ss_pred cCCCHHHHHHHHCCCH
Confidence 6789999999999988
No 424
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=41.41 E-value=17 Score=21.26 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.4
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.|+.+
T Consensus 40 ~gltq~elA~~~gis~---~~is~iE~ 63 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDR---TYISGIER 63 (99)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHC
Confidence 4578999999999887 66666643
No 425
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=41.20 E-value=17 Score=20.88 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=19.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..+||..+|+++ ..+.++.+
T Consensus 13 ~gltq~~lA~~~gis~---~~i~~~e~ 36 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAK---SYLSSIER 36 (111)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 4589999999999988 77777654
No 426
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=40.65 E-value=9.2 Score=24.20 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=17.3
Q ss_pred HH-hCC-CCCCHHHHHHhcCCCC
Q 041968 54 IH-KHG-QPMTLSQIASALDIQK 74 (87)
Q Consensus 54 L~-~~~-gp~S~~ELA~~~~~~~ 74 (87)
+. +.| ..+|+.+||++.|+++
T Consensus 24 ~~~~~G~~~~ti~~Ia~~Agvs~ 46 (220)
T 3lsj_A 24 MESGRGFGSLSLREVTRAAGIVP 46 (220)
T ss_dssp TTTSCCGGGCCHHHHHHHHTSCG
T ss_pred HHhCCCcccCCHHHHHHHhCCCh
Confidence 45 545 6799999999999987
No 427
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=40.55 E-value=9.7 Score=23.30 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=20.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
.|.++.|+|..+++++ ..+.++|+.
T Consensus 19 ~p~~~~~la~~~~~~~---~~~~~~l~~ 43 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDE---QAMRLTLRQ 43 (121)
T ss_dssp SCEEHHHHHHHTTCCH---HHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHHH
Confidence 5779999999999988 666666654
No 428
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=40.29 E-value=53 Score=19.94 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=18.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.|+.+
T Consensus 52 ~glTQ~eLA~~lGis~---~~Is~iE~ 75 (120)
T 2o38_A 52 ARLSQAAAAARLGINQ---PKVSALRN 75 (120)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5689999999999887 66666543
No 429
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=40.09 E-value=8.4 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.3
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|..+||+++|+.+ ..+|+
T Consensus 22 ~~~s~~~IA~~~Gvs~---~slY~ 42 (207)
T 2xpw_A 22 DGLTTRKLAQKLGIEQ---PTLYW 42 (207)
T ss_dssp HHCCHHHHHHHHTCCH---HHHHH
T ss_pred ccCCHHHHHHHhCCCc---chHHH
Confidence 4589999999999988 66665
No 430
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=39.72 E-value=16 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=23.8
Q ss_pred chHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 50 IPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 50 I~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|.+.+.+++ .|-.+.||+..++.++ ..+..+|++
T Consensus 146 i~~~~~~~g~~pp~~~dl~~~l~~~~---~~~~~~l~~ 180 (258)
T 1lva_A 146 LEDKYRVSRWQPPSFKEVAGSFNLDP---SELEELLHY 180 (258)
T ss_dssp HHHHHHHHTTSCCBHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHhHhCCCH---HHHHHHHHH
Confidence 444454433 4778999999999988 666666664
No 431
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=39.70 E-value=19 Score=20.17 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=17.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
..+|-.|||..+|+++ ..+.++.
T Consensus 25 ~glsq~~lA~~~gis~---~~is~~e 47 (91)
T 1x57_A 25 KGLTQKDLATKINEKP---QVIADYE 47 (91)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 5688999999999877 6666654
No 432
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=39.38 E-value=18 Score=19.09 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCCCChhhHHHHHh
Q 041968 63 LSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 63 ~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..++|...|+++ ..|++-.+
T Consensus 28 ~~~vA~~~gIs~---~tl~~W~~ 47 (59)
T 2glo_A 28 QRATARKYNIHR---RQIQKWLQ 47 (59)
T ss_dssp HHHHHHHTTSCH---HHHHHHHT
T ss_pred HHHHHHHHCcCH---HHHHHHHH
Confidence 999999999988 77877654
No 433
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=39.38 E-value=17 Score=24.88 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
..|..+||+.+|.++ ..+.|.+|.+
T Consensus 134 g~t~~~iA~~lG~s~---~~V~~~l~l~ 158 (230)
T 1vz0_A 134 GLTQEEVARRVGKAR---STVANALRLL 158 (230)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHHGG
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHHHH
Confidence 478999999999998 8888888764
No 434
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=39.38 E-value=19 Score=21.09 Aligned_cols=24 Identities=13% Similarity=0.451 Sum_probs=19.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..+||..+|+++ ..+.++.+
T Consensus 23 ~glsq~~lA~~~gis~---~~is~~e~ 46 (113)
T 2eby_A 23 LDLKINELAELLHVHR---NSVSALIN 46 (113)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5689999999999888 66766653
No 435
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=39.24 E-value=8.9 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=16.7
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||++.|+.+ ..+++
T Consensus 37 ~~~t~~~IA~~aGvs~---~tlY~ 57 (251)
T 3npi_A 37 SDAKLEAIAKKSGMSK---RMIHY 57 (251)
T ss_dssp HHCCHHHHHHHHCCCH---HHHHH
T ss_pred cccCHHHHHHHHCCCH---HHHHH
Confidence 4578999999999987 66665
No 436
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=38.65 E-value=22 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=17.5
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|..|||+.+|+++ ..+.++
T Consensus 19 ~glSq~eLA~~~gis~---~~is~i 40 (112)
T 2wus_R 19 RRITLLDASLFTNINP---SKLKRI 40 (112)
T ss_dssp TTCCHHHHHHHSSCCH---HHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHH
Confidence 6799999999999887 555544
No 437
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=38.58 E-value=23 Score=21.67 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=20.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
...|-+|||..+|+.. ..+.|+++
T Consensus 33 ~g~tQ~eIA~~lGiSR---~~VsrlL~ 56 (101)
T 2w7n_A 33 DGKPQATFATSLGLTR---GAVSQAVH 56 (101)
T ss_dssp TCCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred cCCCHHHHHHHHCCCH---HHHHHHHH
Confidence 5689999999999988 77888875
No 438
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=38.51 E-value=20 Score=21.88 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHHhCchHHHHhCCCCCCHHHHHHhcC------CCCCChhhHHHHHhcC
Q 041968 41 SLKCAVELGIPDVIHKHGQPMTLSQIASALD------IQKNKAHCIQRLMRIL 87 (87)
Q Consensus 41 aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~------~~~~~~~~L~RlLR~L 87 (87)
.++-..++-|...|.+ +|.+.-||++.+. +++ ..+++.|+-|
T Consensus 10 l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i~~---gtly~~L~~L 57 (117)
T 3elk_A 10 ILHGLITLYILKELVK--RPMHGYELQKSMFETTGQALPQ---GSIYILLKTM 57 (117)
T ss_dssp HHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCCCT---THHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCCCc---chHHHHHHHH
Confidence 3344455556666763 7999999998886 566 7888888743
No 439
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=38.50 E-value=20 Score=19.75 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=15.5
Q ss_pred CHHHHHHhcCCCCCChhhHHHHH
Q 041968 62 TLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 62 S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
|..|||..+|+++ ..+.|+-
T Consensus 29 sq~~lA~~~gis~---~~is~~E 48 (86)
T 2ofy_A 29 SMVTVAFDAGISV---ETLRKIE 48 (86)
T ss_dssp CHHHHHHHHTCCH---HHHHHHH
T ss_pred CHHHHHHHhCCCH---HHHHHHH
Confidence 8889999999877 6666654
No 440
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=38.05 E-value=18 Score=21.46 Aligned_cols=23 Identities=4% Similarity=0.179 Sum_probs=16.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
..+|-.|||..+|+++ ..+.++.
T Consensus 33 ~gltq~elA~~~gis~---~~is~~E 55 (114)
T 3vk0_A 33 KGWSQEELARQCGLDR---TYVSAVE 55 (114)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 4578888888888877 6666654
No 441
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=37.24 E-value=7.1 Score=25.52 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
|++.+. ...|..+||..+|++. ..++|.++
T Consensus 151 i~~l~~---~G~s~~~Ia~~l~vs~---~Tvyr~l~ 180 (193)
T 3uj3_X 151 AGRLLA---QGIPRKQVALIYDVAL---STLYKKHP 180 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHH---cCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 455444 3379999999999988 78888775
No 442
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=37.21 E-value=23 Score=20.79 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=17.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
..+|-.|||..+|+++ ..+.|+.
T Consensus 40 ~glsq~~lA~~~gis~---~~is~~E 62 (117)
T 3f52_A 40 KGVTLRELAEASRVSP---GYLSELE 62 (117)
T ss_dssp HTCCHHHHHHHTTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 3478889999998877 6666654
No 443
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=37.04 E-value=25 Score=21.47 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHhCchHHHHhCCCCCCHHHHHHhc------CCCCCChhhHHHHHhc
Q 041968 41 SLKCAVELGIPDVIHKHGQPMTLSQIASAL------DIQKNKAHCIQRLMRI 86 (87)
Q Consensus 41 aL~aaveLgI~d~L~~~~gp~S~~ELA~~~------~~~~~~~~~L~RlLR~ 86 (87)
.++-..++-|.-.|.+ +|.+--||++.+ ++++ ..|+++|+-
T Consensus 9 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~---gtlY~~L~r 55 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEIVE---GTVYTILLR 55 (116)
T ss_dssp HHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSCCH---HHHHHHHHH
T ss_pred HHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCCCc---cHHHHHHHH
Confidence 3333445555566663 799999999998 4566 888888874
No 444
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=36.87 E-value=15 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=9.7
Q ss_pred CCCCHHHHHHhcC
Q 041968 59 QPMTLSQIASALD 71 (87)
Q Consensus 59 gp~S~~ELA~~~~ 71 (87)
+++|..|||+.+|
T Consensus 23 ~~lT~~elA~~~~ 35 (123)
T 3qwg_A 23 GPHTSAEVIAALK 35 (123)
T ss_dssp CSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHc
Confidence 5677888887776
No 445
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=36.55 E-value=36 Score=22.98 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=24.3
Q ss_pred hCchHHHHhCC-CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 48 LGIPDVIHKHG-QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 48 LgI~d~L~~~~-gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
+...+.|.+.| .-+|..|||+.+|+++ ..++|=
T Consensus 15 ~r~l~~l~~~g~~~iss~~l~~~~~~~~---~~iRkd 48 (211)
T 2dt5_A 15 LRILEELEAQGVHRTSSEQLGGLAQVTA---FQVRKD 48 (211)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHTSCH---HHHHHH
T ss_pred HHHHHHHHHcCCcEECHHHHHHHhCCCH---HHeech
Confidence 44555566555 6679999999999999 666653
No 446
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=36.42 E-value=21 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+.|+|..+||+.++.++ ..+..+|.
T Consensus 28 ~epvs~~~La~~l~~~~---~~v~~~l~ 52 (219)
T 2z99_A 28 DTPVTADALAAATEQPV---YRVAAKLQ 52 (219)
T ss_dssp SSCBCHHHHHHHHTSCH---HHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 68999999999999877 55555543
No 447
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=36.23 E-value=22 Score=20.75 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=18.4
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.|+.+
T Consensus 21 ~glsq~~lA~~~gis~---~~i~~~e~ 44 (114)
T 3op9_A 21 HGLKNHQIAELLNVQT---RTVAYYMS 44 (114)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 4578999999999887 66666543
No 448
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=36.16 E-value=27 Score=19.55 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=16.7
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|-.|||..+|+++ ..+.++
T Consensus 26 ~gltq~elA~~~gis~---~~is~~ 47 (86)
T 3eus_A 26 AGLTQADLAERLDKPQ---SFVAKV 47 (86)
T ss_dssp TTCCHHHHHHHTTCCH---HHHHHH
T ss_pred cCCCHHHHHHHhCcCH---HHHHHH
Confidence 4588899999999877 555554
No 449
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.95 E-value=21 Score=21.22 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.6
Q ss_pred CCCHHHHHHhcCCCC
Q 041968 60 PMTLSQIASALDIQK 74 (87)
Q Consensus 60 p~S~~ELA~~~~~~~ 74 (87)
..|..|||+.+++.+
T Consensus 49 G~s~~EIA~~L~iS~ 63 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSI 63 (99)
T ss_dssp TCCHHHHHHHHTSCH
T ss_pred CCCHHHHHHHHCcCH
Confidence 468899999999876
No 450
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=35.71 E-value=21 Score=24.41 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.6
Q ss_pred HHhCC-CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 54 IHKHG-QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 54 L~~~~-gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
+.+.| ..+|+.+||++.|+.. ..+++
T Consensus 133 ~~~~G~~~~T~~~IA~~AGvs~---gtlY~ 159 (311)
T 4ich_A 133 IARRGYHNVRIHDIASELGTSN---ATIHY 159 (311)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHcCCccCCHHHHHHHhCCCc---hhHHH
Confidence 33334 5689999999999988 66665
No 451
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=35.44 E-value=21 Score=20.13 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=16.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|-.|||..+|+++ ..+.|+
T Consensus 16 ~gltq~~lA~~~gis~---~~is~~ 37 (99)
T 2l49_A 16 EYLSRQQLADLTGVPY---GTLSYY 37 (99)
T ss_dssp TTCCHHHHHHHHCCCH---HHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHH
Confidence 4578999999999876 555554
No 452
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.31 E-value=20 Score=20.48 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.8
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||..+|+.+
T Consensus 43 ~g~s~~eIA~~l~is~ 58 (91)
T 2rnj_A 43 KGYSNQEIASASHITI 58 (91)
T ss_dssp TTCCTTHHHHHHTCCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 3578999999999987
No 453
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.04 E-value=27 Score=21.19 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=17.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
...|..|||+.+|+++ ..+++.
T Consensus 37 ~g~s~~EIA~~lgiS~---~tV~~~ 58 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSR---QAVYDN 58 (113)
T ss_dssp TCCCHHHHHHHHTCCH---HHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHH
Confidence 4589999999999988 555443
No 454
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=34.91 E-value=28 Score=24.20 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=25.5
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|.+.+. ....+..+|++.+.-|| .+..||||+
T Consensus 25 l~~~~~--~~~~~~~~la~~I~~Dp---~Lt~~lLr~ 56 (288)
T 3ljx_A 25 ILNLAQ--REDVTAEALAQLIQTDP---ALTGRILRF 56 (288)
T ss_dssp HHHHHT--STTCCHHHHHHHHTTCH---HHHHHHHHH
T ss_pred HHHHHc--CCCCCHHHHHHHHHHCH---HHHHHHHHH
Confidence 344444 25679999999999999 999999985
No 455
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=34.86 E-value=23 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=19.4
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||+.+|+++ ..+.|+.+
T Consensus 22 ~g~s~~~la~~~gis~---~~ls~~e~ 45 (198)
T 2bnm_A 22 VKMDHAALASLLGETP---ETVAAWEN 45 (198)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5689999999999988 77777654
No 456
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.85 E-value=30 Score=20.87 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=14.5
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||+.+|+++
T Consensus 40 ~g~s~~EIA~~lgiS~ 55 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSR 55 (113)
T ss_dssp SCCCHHHHHHHTTCCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 5689999999999988
No 457
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.80 E-value=30 Score=21.50 Aligned_cols=22 Identities=14% Similarity=0.502 Sum_probs=19.3
Q ss_pred CCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 61 MTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.|..+||..+|+++ ..++|.++
T Consensus 42 ~s~~~IA~~lgis~---~TV~rwl~ 63 (159)
T 2k27_A 42 VRPCDISRQLRVSH---GCVSKILG 63 (159)
T ss_dssp CCHHHHHHHHTCCS---HHHHHHHC
T ss_pred CCHHHHHHHHCcCH---HHHHHHHH
Confidence 68999999999988 88888875
No 458
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=34.46 E-value=28 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
....|..|||+.+|+++ ..+.+.+
T Consensus 201 ~~g~s~~EIA~~lgis~---~~V~~~~ 224 (239)
T 1rp3_A 201 YEELPAKEVAKILETSV---SRVSQLK 224 (239)
T ss_dssp TSCCCHHHHHHHTTSCH---HHHHHHH
T ss_pred hcCCCHHHHHHHhCCCH---HHHHHHH
Confidence 36799999999999988 5555443
No 459
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.42 E-value=29 Score=21.69 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=14.5
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||+.+|+++
T Consensus 155 ~g~s~~EIA~~lgis~ 170 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPV 170 (194)
T ss_dssp TCCCHHHHHHHTTSCH
T ss_pred cCCCHHHHHHHHCCCH
Confidence 5689999999999988
No 460
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=34.20 E-value=25 Score=20.91 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=18.5
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.|+-+
T Consensus 35 ~gltq~elA~~~gis~---~~is~~E~ 58 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSS---RTIQNMEK 58 (111)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHC
Confidence 5688999999999887 66666543
No 461
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=34.07 E-value=17 Score=23.09 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=28.9
Q ss_pred HHHHHHhCchHHHHhCCCCCCHHHHHHhc--------CCCCCChhhHHHHHhcC
Q 041968 42 LKCAVELGIPDVIHKHGQPMTLSQIASAL--------DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 42 L~aaveLgI~d~L~~~~gp~S~~ELA~~~--------~~~~~~~~~L~RlLR~L 87 (87)
++-..++-|...|.+ +|.+..||++.+ ++++ ..|+++|+-|
T Consensus 38 ~~g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~is~---gtLy~~L~rL 86 (145)
T 1xma_A 38 IRGYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVIKE---TTLYSAFARL 86 (145)
T ss_dssp GGGTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCCCH---HHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCcCh---hHHHHHHHHH
Confidence 344455666666764 789999998887 4666 8888888743
No 462
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=34.05 E-value=28 Score=21.27 Aligned_cols=23 Identities=13% Similarity=0.457 Sum_probs=19.1
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..+||..+|+++ ..++|.++
T Consensus 48 G~s~~~iA~~lgis~---~TV~rw~~ 70 (149)
T 1k78_A 48 GVRPCDISRQLRVSH---GCVSKILG 70 (149)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHH
Confidence 378999999999988 88888765
No 463
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=33.94 E-value=12 Score=22.47 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.4
Q ss_pred CCCC-CHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPM-TLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~-S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++.+ |..|||+.+|+.. ..+.+-++.
T Consensus 40 g~~lps~~eLa~~lgVSr---~tVr~al~~ 66 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITR---SVIVNALRK 66 (102)
T ss_dssp TEEEECHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCcCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 4555 9999999999987 777776654
No 464
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=33.88 E-value=58 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 37 INSMSLKCAVELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 37 ~~~~aL~aaveLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+...||.+|++ ..+.|.|+.||+..++++. .-+.|..|
T Consensus 171 vaAAclYiACR--------~~~~prtl~eI~~~~~v~~---keigr~~k 208 (345)
T 4bbr_M 171 IMAASILIGCR--------RAEVARTFKEIQSLIHVKT---KEFGKTLN 208 (345)
T ss_dssp HHHHHHHHHHH--------HTCCBCCHHHHHHHHTCCT---THHHHHHH
T ss_pred HHHHHHHHHHH--------hcCCCccHHHHHHHhCCCH---HHHHHHHH
Confidence 34556666655 2368999999999999988 44555443
No 465
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=33.43 E-value=27 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=17.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|..|||+.+|+++ ..+.++
T Consensus 15 ~gltq~elA~~~gis~---~~is~i 36 (130)
T 3fym_A 15 LGMTLTELEQRTGIKR---EMLVHI 36 (130)
T ss_dssp TTCCHHHHHHHHCCCH---HHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHH
Confidence 6789999999999877 555443
No 466
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=33.05 E-value=31 Score=19.59 Aligned_cols=23 Identities=4% Similarity=0.153 Sum_probs=17.5
Q ss_pred CCCCHHHHHHhcCCCCCChhh----HHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHC----IQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~----L~RlL 84 (87)
..+|-.|||..+|+++ .. +.++.
T Consensus 13 ~glsq~~lA~~~gis~---~~~~~~is~~E 39 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDE---ASASARMNQYE 39 (98)
T ss_dssp HTCCHHHHHHHTTCCH---HHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCc---chhhhHHHHHH
Confidence 4578899999999887 66 66554
No 467
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=32.96 E-value=26 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=25.7
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhc--------CCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASAL--------DIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~--------~~~~~~~~~L~RlLR~ 86 (87)
++-|.-.|.. +|.+..||++.+ ++++ ..+++.|+-
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~s~---~~ly~~L~~ 46 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKASH---QQVYRELNK 46 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCCCH---HHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCCCc---CcHHHHHHH
Confidence 4445666764 799999999998 4555 778887764
No 468
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=32.76 E-value=24 Score=24.37 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=25.6
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|.+.+. ....+..+|++.+..|| .+..|+||+
T Consensus 33 l~~~~~--~~~~~~~~la~~I~~Dp---~Ls~~lLr~ 64 (281)
T 3i7a_A 33 VQEVVG--RPDSSLKQVAEIIGQDA---AISARIIKV 64 (281)
T ss_dssp HHHHHT--STTCCHHHHHHHHHTCH---HHHHHHHHH
T ss_pred HHHHHc--CCCCCHHHHHHHHHHCH---HHHHHHHHH
Confidence 344444 35679999999999999 999999985
No 469
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=32.59 E-value=20 Score=24.91 Aligned_cols=24 Identities=29% Similarity=0.330 Sum_probs=21.0
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
...|..|||+..|++. ..+.|+|+
T Consensus 8 ~~~Ti~diA~~aGVS~---~TVSrvLn 31 (366)
T 3h5t_A 8 QYGTLASIAAKLGISR---TTVSNAYN 31 (366)
T ss_dssp CTTHHHHHHHHHTSCH---HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHC
Confidence 6679999999999998 88888875
No 470
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=32.49 E-value=27 Score=24.07 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=25.6
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|.+.+. ....+..+|++.+.-|| .+..||||+
T Consensus 24 l~~~~~--~~~~~~~~la~~I~~Dp---~Ls~~lLr~ 55 (275)
T 3m1t_A 24 LLDVVN--NEDSTVKAVSEKLSHDP---VLSARVLRL 55 (275)
T ss_dssp HHHHHH--CTTCCHHHHHHHHHTCH---HHHHHHHHH
T ss_pred HHHHHc--CCCCCHHHHHHHHHHCH---HHHHHHHHH
Confidence 344454 35679999999999999 999999985
No 471
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=32.47 E-value=43 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
....|..+|+..++++. ..+.|+|+-
T Consensus 84 ~~~~t~~~ia~~l~vs~---~tV~r~L~~ 109 (345)
T 3hot_A 84 DDAQTQKQLAEQLEVSQ---QAVSNRLRE 109 (345)
T ss_dssp CSCCCHHHHHHHTTSCH---HHHHHHHHH
T ss_pred CccchHHHHHHHHCCCH---HHHHHHHHH
Confidence 36789999999999988 899999974
No 472
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=32.42 E-value=10 Score=24.87 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=16.5
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
...|+.+||+++|+.+ ..+++
T Consensus 22 ~~~s~~~IA~~aGvs~---~tlY~ 42 (202)
T 4ac0_A 22 EGLTTRKLAQKLGVEQ---PTLYW 42 (202)
T ss_dssp HHCCHHHHHHHHTSCH---HHHHT
T ss_pred ccCCHHHHHHHhCCCc---hhHHh
Confidence 4579999999999987 55554
No 473
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=32.37 E-value=30 Score=21.43 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=14.6
Q ss_pred CCCCHHHHHHhcCCCC
Q 041968 59 QPMTLSQIASALDIQK 74 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~ 74 (87)
...|..|||+.+|+++
T Consensus 108 ~g~s~~EIA~~lgis~ 123 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDT 123 (157)
T ss_dssp SCCCHHHHHHTTTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 6789999999999987
No 474
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=32.26 E-value=23 Score=21.88 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCHHHHHHhcCCCCCChhhHHH
Q 041968 61 MTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~R 82 (87)
.|+.+||++.|+.+ ..+++
T Consensus 36 ~s~~~Ia~~agvs~---~t~Y~ 54 (199)
T 2rek_A 36 ASLEEIARRAGVGS---ATLHR 54 (199)
T ss_dssp CCHHHHHHHHTCCH---HHHHH
T ss_pred CCHHHHHHHhCCch---HHHHH
Confidence 69999999999988 66654
No 475
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=32.13 E-value=29 Score=24.22 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
...+..+|++.+.-|| .+..||||+
T Consensus 43 ~~~~~~~la~~I~~Dp---~Ls~~lLr~ 67 (305)
T 3hc1_A 43 PDVAIDEVADLLLQDQ---VLTARVVHL 67 (305)
T ss_dssp TTCCHHHHHHHHTTCH---HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCH---HHHHHHHHH
Confidence 5679999999999999 999999985
No 476
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.01 E-value=52 Score=19.54 Aligned_cols=24 Identities=4% Similarity=0.295 Sum_probs=19.6
Q ss_pred chHHHHhCCCCCCHHHHHHhcCCCC
Q 041968 50 IPDVIHKHGQPMTLSQIASALDIQK 74 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~~~~~ 74 (87)
|...|... ++.|..||++.++.+.
T Consensus 13 VW~~L~~~-~~~s~~el~k~t~l~d 36 (82)
T 2l02_A 13 VWHALNEA-DGISIPELARKVNLSV 36 (82)
T ss_dssp HHHHHHHC-CSBCHHHHHHHHTCCH
T ss_pred HHHHHhcc-CCCCHHHHHHHhCCCH
Confidence 56677764 7999999999999865
No 477
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=31.98 E-value=27 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=19.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|..|||+.+|+++ ..+.|+.+
T Consensus 23 ~gltq~~lA~~~gis~---~~is~~e~ 46 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSK---AMLGQIER 46 (192)
T ss_dssp TTCCHHHHHHHHSSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5689999999999887 66766654
No 478
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=31.74 E-value=19 Score=21.39 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHhCchHHHHhCCCCCCHHHHHHhc----CCCCCChhhHHHHHhcC
Q 041968 45 AVELGIPDVIHKHGQPMTLSQIASAL----DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 45 aveLgI~d~L~~~~gp~S~~ELA~~~----~~~~~~~~~L~RlLR~L 87 (87)
..++-|.-.|.+ +|.+-.||++.+ ++++ ..++++|+-|
T Consensus 9 ~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i~~---~tly~~L~~L 50 (108)
T 3l7w_A 9 LIEYLILAIVSK--HDSYGYDISQTIKLIASIKE---STLYPILKKL 50 (108)
T ss_dssp HHHHHHHHHHHH--SCEEHHHHHHHHTTTCCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHhCCCc---ChHHHHHHHH
Confidence 345555666664 688888888875 6677 8888888743
No 479
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=31.29 E-value=36 Score=21.23 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=19.8
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..+|-.|||..+|+++ ..+.|+.+
T Consensus 80 ~glTq~elA~~lGis~---s~is~~E~ 103 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQ---PYLSRIEN 103 (141)
T ss_dssp TTCCHHHHHHHTTCCH---HHHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 6689999999999988 77777654
No 480
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=30.65 E-value=36 Score=20.25 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=17.2
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLM 84 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlL 84 (87)
..+|-.|||..+|+++ ..+.++-
T Consensus 24 ~glsq~~lA~~~gis~---~~is~~E 46 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDP---RYLTNIE 46 (126)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHH
T ss_pred cCCCHHHHHHHhCcCH---HHHHHHH
Confidence 5678889999998877 6666553
No 481
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=30.62 E-value=9.2 Score=25.03 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=15.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|+.+||+++|+.+ ..+|+
T Consensus 23 ~~~s~~~IA~~agvs~---~tlY~ 43 (207)
T 2vpr_A 23 EGLTTRKLAQKIGVEQ---PTLYW 43 (207)
T ss_dssp HHCCHHHHHHHHTCCH---HHHTT
T ss_pred ccCCHHHHHHHhCCCh---hHHHH
Confidence 4578999999999877 54543
No 482
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=30.53 E-value=19 Score=21.62 Aligned_cols=26 Identities=12% Similarity=0.354 Sum_probs=20.3
Q ss_pred CCCC-CHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPM-TLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~-S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|..+ |..+||+.+|++. ..+.+.++.
T Consensus 30 G~~lPs~~~La~~~~vSr---~tvr~al~~ 56 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINP---LTVSKAYQS 56 (113)
T ss_dssp TCEECCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCH---HHHHHHHHH
Confidence 3555 8999999999988 767776654
No 483
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=30.39 E-value=35 Score=19.35 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=13.0
Q ss_pred CHHHHHHhcCCCCCChhhHHH
Q 041968 62 TLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 62 S~~ELA~~~~~~~~~~~~L~R 82 (87)
+..+||+.+|+.+ ..+.+
T Consensus 12 ~~~~lA~~lGVs~---~aVs~ 29 (71)
T 2hin_A 12 DVEKAAVGVGVTP---GAVYQ 29 (71)
T ss_dssp SHHHHHHHHTSCH---HHHHH
T ss_pred CHHHHHHHHCCCH---HHHHH
Confidence 4788888888877 55554
No 484
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=30.16 E-value=39 Score=21.79 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=22.9
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChh----hHHHHHh
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAH----CIQRLMR 85 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~----~L~RlLR 85 (87)
|..|...|.+ ..|-.|||+.++.++ . .+.|+++
T Consensus 154 E~~vL~~l~~---g~s~~eIa~~l~is~---~TV~~hi~~l~~ 190 (225)
T 3c3w_A 154 ERTLLGLLSE---GLTNKQIADRMFLAE---KTVKNYVSRLLA 190 (225)
T ss_dssp HHHHHHHHHT---TCCHHHHHHHHTCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHC---CCCHHHHHHHhCCCH---HHHHHHHHHHHH
Confidence 4445666663 389999999999877 5 4555554
No 485
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=30.09 E-value=29 Score=21.69 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
.-+|++.|++++.+.- .+-+++||.|
T Consensus 58 KlITpsvlseRlkI~g---SLAR~aLreL 83 (108)
T 3u5c_Z 58 RYVSVSVLVDRLKIGG---SLARIALRHL 83 (108)
T ss_dssp SSBSHHHHHHTTCCCT---THHHHHHHHH
T ss_pred eEEeHHHhhhhhhhhH---HHHHHHHHHH
Confidence 6789999999999988 8888888864
No 486
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=29.62 E-value=34 Score=20.38 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=16.5
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQR 82 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~R 82 (87)
..+|-.|||..+|++. ..+.|
T Consensus 48 ~glTQ~eLA~~~gvs~---~~is~ 68 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIAR---KTVLN 68 (101)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHH
T ss_pred cCCCHHHHHHHcCCCH---HHHHH
Confidence 6789999999999877 44444
No 487
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=29.49 E-value=27 Score=27.25 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=27.8
Q ss_pred HhCchHHHHhCCCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 47 ELGIPDVIHKHGQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 47 eLgI~d~L~~~~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
++-|.+.|.++ +.+|..+|++.++.++ ....|.|+.
T Consensus 432 ~~~iL~~l~~~-~~it~~~la~~l~~s~---~~~~~~L~~ 467 (583)
T 3lmm_A 432 IAIVLYLLFQR-PFITIDVVARGLQSGK---EAARNALEA 467 (583)
T ss_dssp HHHHHHHHHHS-SSBCHHHHHHHHTSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHhCcCH---HHHHHHHHH
Confidence 34566767764 7899999999999988 767776654
No 488
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=29.23 E-value=30 Score=21.41 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=20.2
Q ss_pred CCCC-CHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPM-TLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~-S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|..+ |..+||+.+|++. ..+++.++.
T Consensus 25 G~~LPse~~La~~~gvSr---~tVr~Al~~ 51 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINP---ATARNGLTL 51 (129)
T ss_dssp TSCBCCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCH---HHHHHHHHH
Confidence 4556 8999999999987 667766654
No 489
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=29.09 E-value=26 Score=23.68 Aligned_cols=27 Identities=15% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhcC
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~L 87 (87)
|..++..+||+.+|++. ..+++-|+.|
T Consensus 47 G~~L~e~~La~~lgVSr---~~VReAL~~L 73 (237)
T 3c7j_A 47 GTALRQQELATLFGVSR---MPVREALRQL 73 (237)
T ss_dssp TCBCCHHHHHHHHTSCH---HHHHHHHHHH
T ss_pred cCeeCHHHHHHHHCCCH---HHHHHHHHHH
Confidence 57889999999999988 7777776643
No 490
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=28.72 E-value=23 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 61 MTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 61 ~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
.|+.++|..+|+++ ..++|-.+
T Consensus 31 ~s~~~va~~~gIs~---~tl~~W~~ 52 (108)
T 2rn7_A 31 ATICSIAPKIGCTP---ETLRVWVR 52 (108)
T ss_dssp HHHHHHHHHHTSCH---HHHHHHHH
T ss_pred ccHHHHHHHHCcCH---HHHHHHHH
Confidence 46777888888777 66666543
No 491
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=28.62 E-value=57 Score=21.02 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=25.9
Q ss_pred chHHHHhCCCCCCHHHHHHhc-----CCCCCChhhHHHHHhcC
Q 041968 50 IPDVIHKHGQPMTLSQIASAL-----DIQKNKAHCIQRLMRIL 87 (87)
Q Consensus 50 I~d~L~~~~gp~S~~ELA~~~-----~~~~~~~~~L~RlLR~L 87 (87)
|-++|.+. +-.|..||++.+ ++.. ..+.|-|+-|
T Consensus 10 I~~li~~~-~~~tq~eL~~~L~~~G~~Vtq---aTisRDL~eL 48 (149)
T 1b4a_A 10 IREIIMSN-DIETQDELVDRLREAGFNVTQ---ATVSRDIKEM 48 (149)
T ss_dssp HHHHHHHS-CCCSHHHHHHHHHHTTCCCCH---HHHHHHHHHT
T ss_pred HHHHHHHC-CCccHHHHHHHHHHcCCCcCH---HHHHHHHHHc
Confidence 55666664 788999999999 5666 7888888743
No 492
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=28.37 E-value=26 Score=23.42 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.7
Q ss_pred CHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 62 TLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 62 S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+..+||+.+++++ ..+.|+++-
T Consensus 26 ~~~~La~~l~vs~---~tvs~~l~~ 47 (230)
T 1fx7_A 26 LRARIAERLDQSG---PTVSQTVSR 47 (230)
T ss_dssp CHHHHHHHHTCCH---HHHHHHHHH
T ss_pred cHHHHHHHHCcCH---HHHHHHHHH
Confidence 4499999999988 777777653
No 493
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=28.29 E-value=24 Score=22.08 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=10.2
Q ss_pred CCCCHHHHHHhcC
Q 041968 59 QPMTLSQIASALD 71 (87)
Q Consensus 59 gp~S~~ELA~~~~ 71 (87)
+++|..|||+.+|
T Consensus 25 ~~~T~~elA~~~~ 37 (135)
T 3r1f_A 25 GPHTSAEVIAALK 37 (135)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHc
Confidence 5778888888876
No 494
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=28.28 E-value=21 Score=21.91 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=20.5
Q ss_pred CCCC-CHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPM-TLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~-S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
|..+ |..+||+.+|++. ..+++.++.
T Consensus 32 G~~lPse~~La~~~~vSr---~tvr~Al~~ 58 (126)
T 3by6_A 32 NDQLPSVRETALQEKINP---NTVAKAYKE 58 (126)
T ss_dssp TCEECCHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCH---HHHHHHHHH
Confidence 4566 9999999999987 767766654
No 495
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=27.82 E-value=78 Score=20.40 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
+.+.|..||+..+|+.+ ..+.+-.+
T Consensus 163 ~~~~t~~ei~~~~~vs~---~ti~~~~~ 187 (200)
T 1ais_B 163 GEKRTQREVAEVARVTE---VTVRNRYK 187 (200)
T ss_dssp TCCCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCCCHHHHHHHhCCCH---HHHHHHHH
Confidence 57889999999999987 55555443
No 496
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=27.60 E-value=33 Score=20.15 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=15.9
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|-.|||..+|+++ ..+.++
T Consensus 48 ~glsq~elA~~~gis~---~~is~~ 69 (107)
T 2jvl_A 48 PTMTQAELGKEIGETA---ATVASY 69 (107)
T ss_dssp SCCCHHHHHHHHTCCH---HHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHH
Confidence 4578888998888876 555554
No 497
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=27.13 E-value=41 Score=19.20 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=17.1
Q ss_pred CCCCHHHHHHhcCCCCCChhhHHHH
Q 041968 59 QPMTLSQIASALDIQKNKAHCIQRL 83 (87)
Q Consensus 59 gp~S~~ELA~~~~~~~~~~~~L~Rl 83 (87)
..+|-.|||..+|+++ ..+.|+
T Consensus 42 ~glsq~elA~~lgvs~---~~is~~ 63 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPL---GTLRDW 63 (99)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHH
T ss_pred cCCCHHHHHHHhCcCH---HHHHHH
Confidence 4688999999999877 656554
No 498
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=26.73 E-value=90 Score=18.55 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=19.5
Q ss_pred HHHHHhCchHHHHhCCCCCCHHHHHHhcC
Q 041968 43 KCAVELGIPDVIHKHGQPMTLSQIASALD 71 (87)
Q Consensus 43 ~aaveLgI~d~L~~~~gp~S~~ELA~~~~ 71 (87)
+-..++-|...|.+ +|.+..||++.+.
T Consensus 11 ~~~~~~~IL~~L~~--~~~~gyel~~~l~ 37 (118)
T 2esh_A 11 GWWLASTILLLVAE--KPSHGYELAERLA 37 (118)
T ss_dssp HHHHHHHHHHHHHH--SCBCHHHHHHHHH
T ss_pred cchHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 34455566666764 7899999999983
No 499
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=26.58 E-value=27 Score=23.39 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHhcCCCCCChhhHHHHHhc
Q 041968 58 GQPMTLSQIASALDIQKNKAHCIQRLMRI 86 (87)
Q Consensus 58 ~gp~S~~ELA~~~~~~~~~~~~L~RlLR~ 86 (87)
+.+.+..+||+.+++++ ..+.|+++-
T Consensus 22 ~~~~~~~~la~~l~vs~---~tvs~~l~~ 47 (226)
T 2qq9_A 22 GVTPLRARIAERLEQSG---PTVSQTVAR 47 (226)
T ss_dssp TCCCBHHHHHHHHTCCH---HHHHHHHHH
T ss_pred CCCccHHHHHHHHCCCH---HHHHHHHHH
Confidence 34446699999999988 767766653
No 500
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=26.38 E-value=14 Score=24.16 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCHHHHHHhcCCCCCChhhHHHHHh
Q 041968 60 PMTLSQIASALDIQKNKAHCIQRLMR 85 (87)
Q Consensus 60 p~S~~ELA~~~~~~~~~~~~L~RlLR 85 (87)
..|..+||..+|+.. ..++|.++
T Consensus 158 G~s~~~Ia~~l~vs~---~T~yr~l~ 180 (193)
T 3plo_X 158 GIPRKQVALIYDVAL---STLYKKHP 180 (193)
T ss_dssp --------------------------
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHh
Confidence 378999999999887 77888765
Done!