BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041969
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 111/210 (52%), Gaps = 22/210 (10%)
Query: 4 ALEVQVLTRENIKPLYPTPHHLRNFKLSLMDQITFPIYVCTIFLYKA--DGSVKSYQISQ 61
A +++ ++ E I P PTP L+ +K+S +DQ+ ++ I Y D ++ Q SQ
Sbjct: 2 APQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQ 61
Query: 62 RLKSSLSKTLTKFYPFAGRLKDDFSIVCNDQGAEYVEALANGFLSEYLQ------KPDQK 115
LK SLSK LT FYP AGR+ + S+ CND G +VEA LS+ +Q K DQ
Sbjct: 62 HLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQY 121
Query: 116 LLRDFHPFKYAESSAAGIGDPMLRIQATFFKCGGLAIAVCTHHKLIDGSSVGTFVNSWTA 175
L +P E + D L ++ +FF+CGG AI V HK+ D S+ TF+N+WTA
Sbjct: 122 LPSAAYPGGKIEVNE----DVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTA 177
Query: 176 TARADXXXXXXXXXXXXVIPAF-VAATFFP 204
T R + V+P F +AA FP
Sbjct: 178 TCRGE---------TEIVLPNFDLAARHFP 198
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 15/183 (8%)
Query: 4 ALEVQVLTRENIKPLYPTPHHLRNFKLSLMDQITFPIYVCTIFLYKADGSVKSYQISQRL 63
A++++V ++P TP RN S +D + + +++ Y+ GS + ++ L
Sbjct: 2 AMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 58
Query: 64 KSSLSKTLTKFYPFAGRLKDD----FSIVCNDQGAEYVEALANGFLSEYLQ-KPDQKLLR 118
K +LS+ L FYP AGRLK D I CN +G +VEA ++G + ++ P +L R
Sbjct: 59 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 118
Query: 119 DFHPFKYAE--SSAAGIGDPMLRIQATFFKCGGLAIAVCTHHKLIDGSSVGTFVNSWTAT 176
Y++ SS A +L +Q T+FKCGG+++ V H DG S F+NSW+
Sbjct: 119 LIPAVDYSQGISSYA-----LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDM 173
Query: 177 ARA 179
AR
Sbjct: 174 ARG 176
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 15/183 (8%)
Query: 4 ALEVQVLTRENIKPLYPTPHHLRNFKLSLMDQITFPIYVCTIFLYKADGSVKSYQISQRL 63
+++++V ++P TP RN S +D + + +++ Y+ GS + ++ L
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 61
Query: 64 KSSLSKTLTKFYPFAGRLKDD----FSIVCNDQGAEYVEALANGFLSEYLQ-KPDQKLLR 118
K +LS+ L FYP AGRLK D I CN +G +VEA ++G + ++ P +L R
Sbjct: 62 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 121
Query: 119 DFHPFKYAE--SSAAGIGDPMLRIQATFFKCGGLAIAVCTHHKLIDGSSVGTFVNSWTAT 176
Y++ SS A +L +Q T+FKCGG+++ V H DG S F+NSW+
Sbjct: 122 LIPAVDYSQGISSYA-----LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDM 176
Query: 177 ARA 179
AR
Sbjct: 177 ARG 179
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 15/183 (8%)
Query: 4 ALEVQVLTRENIKPLYPTPHHLRNFKLSLMDQITFPIYVCTIFLYKADGSVKSYQISQRL 63
+++++V ++P TP RN S +D + + +++ Y+ GS + ++ L
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 61
Query: 64 KSSLSKTLTKFYPFAGRLKDD----FSIVCNDQGAEYVEALANGFLSEYLQ-KPDQKLLR 118
K +LS+ L FYP AGRLK D I CN +G +VEA ++G + ++ P +L R
Sbjct: 62 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 121
Query: 119 DFHPFKYAE--SSAAGIGDPMLRIQATFFKCGGLAIAVCTHHKLIDGSSVGTFVNSWTAT 176
Y++ SS A +L +Q T+FK GG+++ V H DG S F+NSW+
Sbjct: 122 LIPAVDYSQGISSYA-----LLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDM 176
Query: 177 ARA 179
AR
Sbjct: 177 ARG 179
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 62 RLKSSLSKTLTKFYPFAGRL--------KDDFSIVCNDQGAEYVEALANGFLSEYLQKPD 113
+K SLS TL FYPF G+L K + V D A A N L+E
Sbjct: 64 NIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVA-VTFAECNLDLNELTGNHP 122
Query: 114 QKLLR--DFHPFKYAESS--AAGIGDPMLRIQATFFKCGGLAIAVCTHHKLIDGSSVGTF 169
+ + D P ES+ + I P+ +Q T F G+AI + HH L D S+ F
Sbjct: 123 RNCDKFYDLVPI-LGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181
Query: 170 VNSWTATARA 179
+ +WT+ AR+
Sbjct: 182 LKAWTSIARS 191
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 62 RLKSSLSKTLTKFYPFAGRL--------KDDFSIVCNDQGAEYVEALANGFLSEYLQKPD 113
+K SLS TL FYPF G+L K + V D A A N L+E
Sbjct: 64 NIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVA-VTFAECNLDLNELTGNHP 122
Query: 114 QKLLR--DFHPFKYAESS--AAGIGDPMLRIQATFFKCGGLAIAVCTHHKLIDGSSVGTF 169
+ + D P ES+ + I P+ +Q T F G+AI + HH L D S+ F
Sbjct: 123 RNCDKFYDLVPI-LGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181
Query: 170 VNSWTATARA 179
+ +WT+ AR+
Sbjct: 182 LKAWTSIARS 191
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 63 LKSSLSKTLTKFYPFAGRLKDDFSIVCNDQGAEYVE---ALANG---FLSE------YLQ 110
LK SLS TL + P AG ++ C + Y E N SE YL
Sbjct: 60 LKDSLSLTLKYYLPLAG------NVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLI 113
Query: 111 KPDQKLLRDFHPF--KYAE-SSAAGIG-DPMLRIQATFFKCGGLAIAVCTHHKLIDGSSV 166
+ +DF+ F + AE A G+ P+L IQ T F G++I HH DG+++
Sbjct: 114 GYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATI 173
Query: 167 GTFVNSW 173
FV +W
Sbjct: 174 VKFVRAW 180
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 19 YPTPHHLRNFKLSLMDQI---TFPIYVCTI----FLYKADGSVKSYQ-ISQRLKSSLSKT 70
Y HL N L++ ++ P T+ LY G K + + +R K
Sbjct: 59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118
Query: 71 LTKFYPFAGRLKDDFSIVCNDQG-AEYVE 98
L KF+P + ++ +++C +QG AE VE
Sbjct: 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVE 147
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 19 YPTPHHLRNFKLSLMDQI---TFPIYVCTI----FLYKADGSVKSYQ-ISQRLKSSLSKT 70
Y HL N L++ ++ P T+ LY G K + + +R K
Sbjct: 59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118
Query: 71 LTKFYPFAGRLKDDFSIVCNDQG-AEYVE 98
L KF+P + + +++C +QG AE VE
Sbjct: 119 LGKFHPDVAKQLSNLALLCQNQGKAEEVE 147
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
Length = 374
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 74 FYPFAGRLKDDFSIVCNDQGAEYVEALANGFLSEYLQKPDQKLL 117
++ F G+ KD F +V +GA VE++ G ++E+ +P +K++
Sbjct: 51 YHLFEGKHKDGFPVVLGHEGAGIVESVGPG-VTEF--QPGEKVI 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,717,107
Number of Sequences: 62578
Number of extensions: 203387
Number of successful extensions: 765
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 12
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)