Your job contains 1 sequence.
>041970
MSFFSLGHFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPSSVLIKVSAPSSSSSSSPCAS
LSSIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDS
IFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW
NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNA
ALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP
LLQLADHIVSYAKPGAVVGISGILSEQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041970
(327 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2154739 - symbol:AT5G53920 species:3702 "Arabi... 625 4.3e-61 1
TIGR_CMR|CPS_0540 - symbol:CPS_0540 "ribosomal protein L1... 232 1.9e-19 1
TIGR_CMR|VC_0293 - symbol:VC_0293 "ribosomal protein L11 ... 213 2.0e-17 1
UNIPROTKB|P0A8T1 - symbol:prmA "methyltransferase for 50S... 210 7.9e-17 1
TIGR_CMR|SO_0395 - symbol:SO_0395 "ribosomal protein L11 ... 204 1.4e-15 1
TIGR_CMR|BA_4537 - symbol:BA_4537 "ribosomal protein L11 ... 169 1.4e-10 1
TIGR_CMR|GSU_0447 - symbol:GSU_0447 "ribosomal protein L1... 145 9.3e-08 1
TIGR_CMR|CHY_0417 - symbol:CHY_0417 "ribosomal protein L1... 139 5.0e-07 1
TIGR_CMR|CJE_1260 - symbol:CJE_1260 "ribosomal protein L1... 91 0.00012 3
TIGR_CMR|SPO_3120 - symbol:SPO_3120 "ribosomal protein L1... 99 0.00015 2
>TAIR|locus:2154739 [details] [associations]
symbol:AT5G53920 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006479 "protein
methylation" evidence=IEA] [GO:0008276 "protein methyltransferase
activity" evidence=IEA] [GO:0006744 "ubiquinone biosynthetic
process" evidence=RCA] InterPro:IPR004498 InterPro:IPR010456
Pfam:PF06325 HAMAP:MF_00735 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0008276 EMBL:AB007644 HSSP:Q84BQ9
eggNOG:COG2264 PANTHER:PTHR18895:SF3 TIGRFAMs:TIGR00406
HOGENOM:HOG000007390 UniGene:At.29528 UniGene:At.60677
IPI:IPI00544688 RefSeq:NP_200203.1 ProteinModelPortal:Q9FN34
SMR:Q9FN34 STRING:Q9FN34 PaxDb:Q9FN34 PRIDE:Q9FN34
EnsemblPlants:AT5G53920.1 GeneID:835475 KEGG:ath:AT5G53920
TAIR:At5g53920 InParanoid:Q9FN34 OMA:PEKDAVN PhylomeDB:Q9FN34
ProtClustDB:CLSN2686572 Genevestigator:Q9FN34 Uniprot:Q9FN34
Length = 371
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 146/333 (43%), Positives = 189/333 (56%)
Query: 8 HFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPXXXXXXXXXXXXXXXXXXXXXXXXXYPP 67
+F K P K L+RH + + +P T+
Sbjct: 5 NFIKHFPCKNLSRH--ILRDSRVRPLCFFTSSTPPSSFSIFASLSTSSSSSSSSSCFTDE 62
Query: 68 SVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADEN-----SDEIYIDSIF 122
S +PYL VRI C KHALD FSEA LCFGASS +VDE +AD++ S EI I+SIF
Sbjct: 63 SFAAPYLSVRIHCPKHALDPFSEALLCFGASSVAVDEAIEEADQDETSLASKEICIESIF 122
Query: 123 PECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN- 181
P ++V CI ANSIGLKEIP+++V+MG++ +WI K Q+ F PVE+ + LWIVPEW
Sbjct: 123 PVHEEVKMCISQAANSIGLKEIPKFKVEMGDELDWITKNQDLFQPVEIAERLWIVPEWTS 182
Query: 182 ---VQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVD--IDPQVIKSA 236
+A NIILNPG AFGTGEH TTK IKGGE FLDYGT + +K
Sbjct: 183 PPVAEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGEAFLDYGTGSGILAIAALKFG 242
Query: 237 HQNAALNNIGPKKMK--LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA 294
++ +I P + +H P E +E SS + + + E++DVVIA
Sbjct: 243 AASSVGVDIDPLAINSAIHNAALNNIPLEKLELHLAPIENSSSGREIPLQK-EQFDVVIA 301
Query: 295 NILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
NILLNP++ LADHI+S+ KPGA +GISGILSEQ
Sbjct: 302 NILLNPVMNLADHILSFVKPGATIGISGILSEQ 334
>TIGR_CMR|CPS_0540 [details] [associations]
symbol:CPS_0540 "ribosomal protein L11 methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006464
"cellular protein modification process" evidence=ISS] [GO:0008757
"S-adenosylmethionine-dependent methyltransferase activity"
evidence=ISS] InterPro:IPR004498 InterPro:IPR010456 Pfam:PF06325
PIRSF:PIRSF000401 HAMAP:MF_00735 GO:GO:0005737 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008276 eggNOG:COG2264 KO:K02687
ProtClustDB:PRK00517 PANTHER:PTHR18895:SF3 TIGRFAMs:TIGR00406
RefSeq:YP_267298.1 ProteinModelPortal:Q489G6 STRING:Q489G6
GeneID:3523049 KEGG:cps:CPS_0540 PATRIC:21464421
HOGENOM:HOG000007390 OMA:ASRYNAE BioCyc:CPSY167879:GI48-635-MONOMER
Uniprot:Q489G6
Length = 293
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 77/271 (28%), Positives = 131/271 (48%)
Query: 72 PYLLVRICCQKHALDMFSE-APLCFGASSTSVDEHDNDADEN--SDE-IY-----IDSIF 122
P++ +R+ + + +S+ C + T +D D E DE IY + +F
Sbjct: 2 PWIQLRLSANEDNAEKYSDWLSACGSQAVTFIDAKDTPIYEPLPGDEVIYWSNTVVMGLF 61
Query: 123 PECKDVDECILNTANSIGL-KEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW- 180
D+D+ +++ SI KE RY+++ E +W ++ ++FHP++ + LW+ P W
Sbjct: 62 EASHDMDK-VISYLQSIHPDKEQMRYKLEQLEDKDWEREWMDNFHPMKFGERLWVCPSWR 120
Query: 181 ---NVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAH 237
+ +A N++L+PGLAFGTG H TT + G +L D VD S
Sbjct: 121 DVPDPEAVNVMLDPGLAFGTGTHPTT----ALCLTWLDGLDL-QDKTVVDFG---CGSGI 172
Query: 238 QNAALNNIGPKKM-KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI 296
+ A +G KK+ + + P S N + + + L + + E + DVV+ANI
Sbjct: 173 LSLAALKLGAKKVIGIDIDPQALQASLANAERNNVSDRLELYLPKDQPEFKA-DVVVANI 231
Query: 297 LLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
L PL +LA I+ Y ++ +SG+L EQ
Sbjct: 232 LAGPLRELAPVIIEYVGDKGLLALSGVLEEQ 262
>TIGR_CMR|VC_0293 [details] [associations]
symbol:VC_0293 "ribosomal protein L11 methyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006464
"cellular protein modification process" evidence=ISS] [GO:0008168
"methyltransferase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR004498 InterPro:IPR010456
Pfam:PF06325 PIRSF:PIRSF000401 HAMAP:MF_00735 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008276
eggNOG:COG2264 KO:K02687 ProtClustDB:PRK00517 PANTHER:PTHR18895:SF3
TIGRFAMs:TIGR00406 OMA:ASRYNAE PIR:D82341 RefSeq:NP_229948.1
ProteinModelPortal:Q9KV64 DNASU:2614963 GeneID:2614963
KEGG:vch:VC0293 PATRIC:20079633 Uniprot:Q9KV64
Length = 295
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 56/185 (30%), Positives = 91/185 (49%)
Query: 147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
++V+ E +W ++ ++FHP++ + LWI P W + QA N++L+PGLAFGTG H T
Sbjct: 86 HKVEQVEDKDWEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPT 145
Query: 203 TKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPS 262
T G+ +D+G ++ A A+ K + + + P S
Sbjct: 146 TALCLEWLDNLDLSGKTVIDFGC---GSGILAIA----AIKLGAAKVIGIDIDPQALLAS 198
Query: 263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 322
N +G+ + + + + E DVV+ANIL PL +L+ I KPG + +SG
Sbjct: 199 KDNAARNGVEDQIEVYLPKDQPEGLVADVVVANILAGPLRELSPIIKGLLKPGGQLAMSG 258
Query: 323 ILSEQ 327
IL Q
Sbjct: 259 ILDTQ 263
>UNIPROTKB|P0A8T1 [details] [associations]
symbol:prmA "methyltransferase for 50S ribosomal subunit
protein L11" species:83333 "Escherichia coli K-12" [GO:0016279
"protein-lysine N-methyltransferase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0018023
"peptidyl-lysine trimethylation" evidence=IDA;IMP] [GO:0018012
"N-terminal peptidyl-alanine trimethylation" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR004498
InterPro:IPR010456 Pfam:PF06325 PIRSF:PIRSF000401 HAMAP:MF_00735
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0016279 EMBL:M95784
EMBL:S67010 GO:GO:0018023 GO:GO:0018012 EMBL:M30953 eggNOG:COG2264
KO:K02687 ProtClustDB:PRK00517 PANTHER:PTHR18895:SF3
TIGRFAMs:TIGR00406 HOGENOM:HOG000007390 PIR:E65118
RefSeq:NP_417725.1 RefSeq:YP_491441.1 ProteinModelPortal:P0A8T1
SMR:P0A8T1 DIP:DIP-47862N IntAct:P0A8T1 MINT:MINT-1232840
PaxDb:P0A8T1 PRIDE:P0A8T1 EnsemblBacteria:EBESCT00000004290
EnsemblBacteria:EBESCT00000014672 GeneID:12932872 GeneID:947708
KEGG:ecj:Y75_p3177 KEGG:eco:b3259 PATRIC:32121948 EchoBASE:EB1460
EcoGene:EG11497 OMA:DNFHPIK BioCyc:EcoCyc:EG11497-MONOMER
BioCyc:ECOL316407:JW3227-MONOMER BioCyc:MetaCyc:EG11497-MONOMER
Genevestigator:P0A8T1 Uniprot:P0A8T1
Length = 293
Score = 210 (79.0 bits), Expect = 7.9e-17, P = 7.9e-17
Identities = 73/257 (28%), Positives = 120/257 (46%)
Query: 83 HALDMFSEAPLCFGASS-TSVDEHDNDADE---NSDEIYIDS----IFPECKDVDECILN 134
+A D+ S+A + GA S T D HD E ++ D+ +F D+++ +
Sbjct: 14 NAEDL-SDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMNDVVAI 72
Query: 135 TANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILN 190
N L ++++ E +W ++ ++FHP+ + LWI P W + A N++L+
Sbjct: 73 LENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLD 132
Query: 191 PGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKM 250
PGLAFGTG H TT G+ +D+G ++ A AL K +
Sbjct: 133 PGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGC---GSGILAIA----ALKLGAAKAI 185
Query: 251 KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVS 310
+ + P S N +G+ + L + + E + DVV+ANIL PL +LA I
Sbjct: 186 GIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELAPLISV 245
Query: 311 YAKPGAVVGISGILSEQ 327
G ++G+SGIL+ Q
Sbjct: 246 LPVSGGLLGLSGILASQ 262
>TIGR_CMR|SO_0395 [details] [associations]
symbol:SO_0395 "ribosomal protein L11 methyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0006412
"translation" evidence=ISS] [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008168 "methyltransferase
activity" evidence=ISS] InterPro:IPR004498 InterPro:IPR010456
Pfam:PF06325 PIRSF:PIRSF000401 HAMAP:MF_00735 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008276
eggNOG:COG2264 KO:K02687 ProtClustDB:PRK00517 PANTHER:PTHR18895:SF3
TIGRFAMs:TIGR00406 HOGENOM:HOG000007390 OMA:DNFHPIK
RefSeq:NP_716033.1 ProteinModelPortal:Q8EJR7 GeneID:1168272
KEGG:son:SO_0395 PATRIC:23520493 Uniprot:Q8EJR7
Length = 293
Score = 204 (76.9 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 73/271 (26%), Positives = 120/271 (44%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDNDADE---NSDEIYIDSIFPECKD 127
P++ +RI + S+ + GA S T D D E ++ D++ +
Sbjct: 2 PWIQLRINTNSDDAETISDLLMEEGAVSITFEDGKDTPIFEPKLGETPLWRDTVVVALFE 61
Query: 128 VDECILNTANSIGLKEIP------RYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW- 180
D + T LK +P ++++ E +W+++ +++HP++ K LWI P W
Sbjct: 62 ADTDLTPTIEM--LKTLPFLGEHFSHKIEQIEDKDWVREWMDNYHPIQFGKRLWICPSWR 119
Query: 181 ---NVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAH 237
+ A N+IL+PGLAFGTG H TT E +D+G I +
Sbjct: 120 EVPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNEEVIDFGC----GSGILAV- 174
Query: 238 QNAALNNIGPKKMK-LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI 296
AAL +G KK+ + + S N + + + L + + DV++ANI
Sbjct: 175 --AALK-LGAKKVTGIDIDYQAIDASKANAERNDVADQLELYLPEDQPADLKADVLVANI 231
Query: 297 LLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
L PL +LA I K G + +SG+L EQ
Sbjct: 232 LAGPLRELAPLIAERVKTGGKLALSGLLKEQ 262
>TIGR_CMR|BA_4537 [details] [associations]
symbol:BA_4537 "ribosomal protein L11 methyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008168
"methyltransferase activity" evidence=ISS] InterPro:IPR004498
InterPro:IPR010456 Pfam:PF06325 PIRSF:PIRSF000401 HAMAP:MF_00735
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008276 RefSeq:NP_846760.1
RefSeq:YP_021183.1 RefSeq:YP_030459.1 ProteinModelPortal:Q81LS4
DNASU:1088267 EnsemblBacteria:EBBACT00000012000
EnsemblBacteria:EBBACT00000014175 EnsemblBacteria:EBBACT00000020446
GeneID:1088267 GeneID:2819007 GeneID:2848691 KEGG:ban:BA_4537
KEGG:bar:GBAA_4537 KEGG:bat:BAS4211 eggNOG:COG2264
HOGENOM:HOG000007391 KO:K02687 OMA:EVNEEEW ProtClustDB:PRK00517
BioCyc:BANT260799:GJAJ-4267-MONOMER
BioCyc:BANT261594:GJ7F-4413-MONOMER PANTHER:PTHR18895:SF3
TIGRFAMs:TIGR00406 Uniprot:Q81LS4
Length = 312
Score = 169 (64.5 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 61/236 (25%), Positives = 105/236 (44%)
Query: 110 DENSDE-IYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMG------EQCN---WIK 159
DE E + I + FP+ + E I +SI + +P Y++++G + N W
Sbjct: 55 DEYPAEGVLIKAYFPQTDSLHETIAGVKSSIDV--LPSYDIEIGTGNITVNEVNEEDWAT 112
Query: 160 KAQESFHPVEVTKGLWIVPEWNVQATN-----II-LNPGLAFGTGEHATTKXXXXXXXXX 213
++ +HPV+++ IVP W + II L+PG+AFGTG H TT
Sbjct: 113 AWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTTMCIRALEKT 172
Query: 214 IKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLH-LVPDRTFPSSMNERV---D 269
++ G+ +D GT S + A +G ++ + L P + MN R+ D
Sbjct: 173 VQPGDTIIDVGT--------GSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTD 224
Query: 270 GIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 325
+V + + GI D+++AN+L +L + K G + SGI++
Sbjct: 225 DVVSVGQNSLLEGIEGP--VDLIVANLLAEIILLFPEDAARVVKSGGLFITSGIIA 278
>TIGR_CMR|GSU_0447 [details] [associations]
symbol:GSU_0447 "ribosomal protein L11 methyltransferase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008757
"S-adenosylmethionine-dependent methyltransferase activity"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=ISS]
InterPro:IPR004498 InterPro:IPR010456 Pfam:PF06325
PIRSF:PIRSF000401 HAMAP:MF_00735 GO:GO:0005737 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0008276 eggNOG:COG2264
HOGENOM:HOG000007391 KO:K02687 PANTHER:PTHR18895:SF3
TIGRFAMs:TIGR00406 RefSeq:NP_951506.1 ProteinModelPortal:Q74G05
GeneID:2686328 KEGG:gsu:GSU0447 PATRIC:22023640 OMA:ITIPIAR
ProtClustDB:CLSK827836 BioCyc:GSUL243231:GH27-438-MONOMER
Uniprot:Q74G05
Length = 299
Score = 145 (56.1 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 66/270 (24%), Positives = 114/270 (42%)
Query: 78 ICCQKHA--LDMFSEAPLCFGASSTSVDEH--DN---DADENSDEIYIDSIFPECKD--- 127
+CCQ A +D+ ++ + + S+D D D E D + + F D
Sbjct: 8 VCCQVPAGLVDLLADFLVELSGNGVSIDNRALDTFTLDGIEELDTATVRAYFDPATDMAG 67
Query: 128 ----VDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQ 183
++ + + A + G IP V + +W ++ F P + + L I P W
Sbjct: 68 QIAQIERFLGDNAAAFGGAPIPAPTVTLIRDEDWATGWRQHFVPTRIGRHLVIKPTWEPF 127
Query: 184 ATN-----IILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAHQ 238
A I L+PG+AFGTG H TT+ + + LD GT S
Sbjct: 128 APEPGDQVIELDPGMAFGTGTHPTTRLCLEALETLGRPDRV-LDVGT--------GSGIL 178
Query: 239 NAALNNIGPKKM-KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL 297
A +G +++ + PD + N ++G+ L + + I +DVV+ANIL
Sbjct: 179 AIAAVRLGARQVIGTDIDPDAVIVAGENCALNGVEVELVTTPLALIPG--RFDVVLANIL 236
Query: 298 LNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
L+++A + + G + +SGIL+E+
Sbjct: 237 AEDLVRMAGDLAAKVAAGGHLILSGILTER 266
>TIGR_CMR|CHY_0417 [details] [associations]
symbol:CHY_0417 "ribosomal protein L11 methyltransferase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006464 "cellular protein modification process" evidence=ISS]
[GO:0008757 "S-adenosylmethionine-dependent methyltransferase
activity" evidence=ISS] InterPro:IPR004498 InterPro:IPR010456
Pfam:PF06325 PIRSF:PIRSF000401 HAMAP:MF_00735 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0008276 HSSP:O60678
eggNOG:COG2264 HOGENOM:HOG000007391 KO:K02687 PANTHER:PTHR18895:SF3
TIGRFAMs:TIGR00406 RefSeq:YP_359278.1 ProteinModelPortal:Q3AF06
STRING:Q3AF06 GeneID:3727819 KEGG:chy:CHY_0417 PATRIC:21273995
OMA:EMRIRIE BioCyc:CHYD246194:GJCN-418-MONOMER Uniprot:Q3AF06
Length = 305
Score = 139 (54.0 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 61/232 (26%), Positives = 108/232 (46%)
Query: 108 DADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIP--RYEVKMGEQCNWIKKAQESF 165
D+ ++ + + FP ++++ + + IP Y ++ E+ +W ++ F
Sbjct: 54 DSVLKAERATVRAYFPLTENINTLLSQINERLKSLGIPFNLYFQEVDEE-SWANSWKKYF 112
Query: 166 HPVEVTKGLWIVPEWNV-----QATNII-LNPGLAFGTGEHATTKXXXXXXXXXIKGGEL 219
PVEV + L I P W + II ++PG+AFGTG H TT + G++
Sbjct: 113 KPVEVGEFL-IKPTWEKLPSGKEDKKIIEIDPGMAFGTGTHVTTALVLEALPKYVSPGKV 171
Query: 220 FLDYGT---VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+D GT + + A + AL+ I P +K V S+N R++ + +
Sbjct: 172 VVDVGTGSGILAIASALLGAEKIYALD-IDPVAVK---VARENI--SIN-RLEDKITVIE 224
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGISGILSEQ 327
+ + G ++T DV+IANI+ + +LA D A G +G SGI+ E+
Sbjct: 225 NDLLHGFNQT--VDVIIANIIAAVIKELALDAYEKLATGGIFIG-SGIIVER 273
>TIGR_CMR|CJE_1260 [details] [associations]
symbol:CJE_1260 "ribosomal protein L11 methyltransferase,
putative" species:195099 "Campylobacter jejuni RM1221" [GO:0006464
"cellular protein modification process" evidence=ISS] [GO:0008757
"S-adenosylmethionine-dependent methyltransferase activity"
evidence=ISS] InterPro:IPR004498 InterPro:IPR010456 Pfam:PF06325
PIRSF:PIRSF000401 HAMAP:MF_00735 GO:GO:0005737 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0008276 HSSP:Q84BQ9 eggNOG:COG2264
HOGENOM:HOG000007391 KO:K02687 ProtClustDB:PRK00517
PANTHER:PTHR18895:SF3 RefSeq:YP_179248.1 ProteinModelPortal:Q5HTY7
STRING:Q5HTY7 GeneID:3231767 KEGG:cjr:CJE1260 PATRIC:20044316
OMA:FSWALEI BioCyc:CJEJ195099:GJC0-1286-MONOMER Uniprot:Q5HTY7
Length = 281
Score = 91 (37.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 95 FGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQ 154
F +++E DN S E + F ++ L T ++ K I + E
Sbjct: 25 FDLGIEAIEEKDNGVYIRSHESLEE--FSWALEIFAQKLTTTFNLNHKIISNLSLVEKEN 82
Query: 155 CNWIKKAQESFHPVEVTKGLWIVPEWNVQATNII---LNPGLAFGTGEHATT 203
+WI++ ++ P+ V ++I W + N I +NP LAFG+G H +T
Sbjct: 83 KDWIQEYKKGIKPILVDN-VYIHTTWQEEKKNCINIKINPALAFGSGHHEST 133
Score = 62 (26.9 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 289 YDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSE 326
Y++++ANI+ + +L L I ++ + A++ +SGIL +
Sbjct: 210 YNLIVANIIADVILILEKDIKNHLEDNAILILSGILDK 247
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 227 DIDPQVIKSAHQNAALNNI 245
D D I S+ +NA LN +
Sbjct: 175 DTDELAIDSSLENARLNGV 193
>TIGR_CMR|SPO_3120 [details] [associations]
symbol:SPO_3120 "ribosomal protein L11 methyltransferase,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006464
"cellular protein modification process" evidence=ISS] [GO:0008757
"S-adenosylmethionine-dependent methyltransferase activity"
evidence=ISS] InterPro:IPR004498 InterPro:IPR010456 Pfam:PF06325
PIRSF:PIRSF000401 HAMAP:MF_00735 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0008276 HOGENOM:HOG000007391
KO:K02687 PANTHER:PTHR18895:SF3 RefSeq:YP_168323.1
ProteinModelPortal:Q5LNT3 GeneID:3195458 KEGG:sil:SPO3120
PATRIC:23379685 OMA:YGSHDAD ProtClustDB:CLSK934068 Uniprot:Q5LNT3
Length = 292
Score = 99 (39.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 289 YDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
YD++ ANIL PL+ LA + S+ +PG +SGIL+EQ
Sbjct: 219 YDLIFANILKGPLVALAPDVASHLRPGGYAILSGILNEQ 257
Score = 57 (25.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 154 QCNWIKKAQESFHPVEVTKGLWI-------VPEWNVQATNIILNPGLAFGTGEHATT 203
+ +W+ + PVE + VPE + +++ +AFGTG H TT
Sbjct: 79 ETDWVAHVKRELSPVEAGRFFVYGSHDADKVPEGRIP---LLIEASMAFGTGHHGTT 132
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 327 293 0.00091 115 3 11 22 0.40 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 610 (65 KB)
Total size of DFA: 224 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.21u 0.18s 23.39t Elapsed: 00:00:01
Total cpu time: 23.21u 0.18s 23.39t Elapsed: 00:00:01
Start: Sat May 11 13:58:52 2013 End: Sat May 11 13:58:53 2013