BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041970
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4JBD7|PRMA_BURVG Ribosomal protein L11 methyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=prmA PE=3 SV=1
Length = 300
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 133/291 (45%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + PE
Sbjct: 6 LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVV 64
Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D++ +L AN IG+ + P+++V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLSPDLEPAVLLAAAANEIGIADTPKFDVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L +K G+ LDYG
Sbjct: 125 WHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQTVKPGQSVLDYGCGSGILAILAR 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N+ PD
Sbjct: 185 KCGADPVIGIDIDPQAVESARQNSERNHADVTYGLPDACPDG------------------ 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|Q478R6|PRMA_DECAR Ribosomal protein L11 methyltransferase OS=Dechloromonas aromatica
(strain RCB) GN=prmA PE=3 SV=1
Length = 296
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 102/212 (48%), Gaps = 52/212 (24%)
Query: 139 IGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLA 194
IGL EIP Y V+ + NW++ Q F P+ V++ LWIVP W + A N+IL+PG+A
Sbjct: 83 IGLSEIPAYSVENVAEQNWVQLTQSQFDPIRVSERLWIVPSWHETPDPAAVNLILDPGMA 142
Query: 195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKS 235
FGTG H TT+LCL L + LDYG VDIDPQ +++
Sbjct: 143 FGTGSHPTTRLCLEWLERNVSEACTVLDYGCGSGILAIAAARLGAGHVAGVDIDPQAVEA 202
Query: 236 AHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN 295
A NA N + L D P + EYDVV+AN
Sbjct: 203 ARANAERNGV------TALFADSATPVA-----------------------GEYDVVVAN 233
Query: 296 ILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
IL NPL LA I ++ +PG + +SGIL EQ
Sbjct: 234 ILSNPLRVLAPAICAHVRPGGKLALSGILREQ 265
>sp|A0K4C9|PRMA_BURCH Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain HI2424) GN=prmA PE=3 SV=1
Length = 300
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + P+
Sbjct: 6 LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64
Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D + +L AN IGL E P++ V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLSADHEPAVLLAAAANEIGLAETPKFVVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L +K G+ LDYG
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N + + +PD DG
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERN----RAEVTYGLPDAC--------PDG------ 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|Q1BZC1|PRMA_BURCA Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain AU 1054) GN=prmA PE=3 SV=1
Length = 300
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + P+
Sbjct: 6 LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64
Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D + +L AN IGL E P++ V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLSADHEPAVLLAAAANEIGLAETPKFVVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L +K G+ LDYG
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N + + +PD DG
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERN----RAEVTYGLPDAC--------PDG------ 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|B1JVC0|PRMA_BURCC Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain MC0-3) GN=prmA PE=3 SV=1
Length = 300
Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 134/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + P+
Sbjct: 6 LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64
Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D + +L AN IGL E P++ V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLSADHEPAVLLAAAANEIGLAETPKFVVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L +K G+ LDYG
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N + + +PD P
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERN----RAEVTYGLPD-ACPEG------------- 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|A9AI41|PRMA_BURM1 Ribosomal protein L11 methyltransferase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=prmA PE=3 SV=1
Length = 300
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + PE
Sbjct: 6 LVVELAREHA-EALSDALLELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVI 64
Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D + +L AN IGL P+++V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLSPDHEPAVLLAAAANEIGLDATPKFDVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVQPGQSVLDYGCGSGILAILAK 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N + + +PD P+
Sbjct: 185 KCGANPVVGIDIDPQAVESARQNSERN----RAEVTYGLPD-ACPAG------------- 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|B4E5V2|PRMA_BURCJ Ribosomal protein L11 methyltransferase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=prmA PE=3 SV=1
Length = 300
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + P+
Sbjct: 6 LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64
Query: 125 ---CKDVDECILNTA--NSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D + +L A N IGL E P++ V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLSADHEPAVLLAAATNEIGLAETPQFVVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L +K G+ LDYG
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N + + +PD DG
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERN----RAEVTYGLPDAC--------PDG------ 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|Q0BIF9|PRMA_BURCM Ribosomal protein L11 methyltransferase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=prmA PE=3 SV=1
Length = 300
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 136/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + P+
Sbjct: 6 LVVELAREHA-EALSDALLELGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQRSRVI 64
Query: 125 ---CKDVDECILNTA--NSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D + +L A N IG+ E P+++V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLSPDHEPAVLLAAAVNDIGVTETPKFDVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L +K G+ LDYG
Sbjct: 125 WHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAR 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N+ + +PD P+
Sbjct: 185 KCGANPVVGIDIDPQAVESARQNSERNH----AEVTYGLPD-ACPAG------------- 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|B1YSW5|PRMA_BURA4 Ribosomal protein L11 methyltransferase OS=Burkholderia ambifaria
(strain MC40-6) GN=prmA PE=3 SV=1
Length = 300
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 136/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + P+
Sbjct: 6 LVVELAREHA-EALSDALLELGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVI 64
Query: 125 ---CKDVDECILNTA--NSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D + +L A N IG+ E P+++V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLSPDHEPAVLLAAAVNDIGVTETPKFDVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L +K G+ LDYG
Sbjct: 125 WHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAR 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N+ + +PD P+
Sbjct: 185 KCGANPVVGIDIDPQAVESARQNSERNH----AEVTYGLPD-ACPAG------------- 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|Q3SMB4|PRMA_THIDA Ribosomal protein L11 methyltransferase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=prmA PE=3 SV=1
Length = 296
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 135/293 (46%), Gaps = 66/293 (22%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHD----------NDADENSDEIYIDSI 121
P+ VRI + S+A + GA S S+++ D + D S E++ SI
Sbjct: 2 PWQSVRILVDSVQAEPLSDALMEAGALSVSLEDADAGTVDETPLFGEPDHPSAELWPHSI 61
Query: 122 ----FPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIV 177
DV E + A G+ Y V+ + +W++ Q F P+ ++ LWIV
Sbjct: 62 AVVLLEADADVAETLRAAAAQAGVAAPLDYTVETVAEQDWVRLTQSQFDPIPISARLWIV 121
Query: 178 PEW----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------- 224
P W + +A N+ L+PGLAFGTG H TT+LCL L + ++GGE LDYG
Sbjct: 122 PTWHEAPDSRALNLKLDPGLAFGTGSHPTTRLCLRWLDANLRGGETLLDYGCGSGILAIA 181
Query: 225 ----------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274
VDIDPQ + ++ NAALN + D F G+
Sbjct: 182 AAKLGARRVEGVDIDPQAVSASRDNAALNEV-----------DAHF---------GLPGE 221
Query: 275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
L++ EYDVV+ANIL NPL +A + + G + +SGIL+EQ
Sbjct: 222 LAAG---------EYDVVVANILTNPLKAMAPLLAGRVRSGGSLVLSGILAEQ 265
>sp|Q39JS9|PRMA_BURS3 Ribosomal protein L11 methyltransferase OS=Burkholderia sp. (strain
383) GN=prmA PE=3 SV=1
Length = 300
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 130/291 (44%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
LV ++HA + S+A L GA S SV++ D D + + P+
Sbjct: 6 LVVELAREHA-EALSDALLELGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64
Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
D + +L AN IG+ E P + V+ E+ +W++ Q F P+ + + +W+VP
Sbjct: 65 ALLAADHEPAVLLAAAANEIGVAETPAFTVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + A + L+PGLAFGTG H TT+LC+ L +K G+ LDYG
Sbjct: 125 WHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA QN+ N+ PD
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERNHADVTYGLPDACPDG------------------ 226
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|Q13U36|PRMA_BURXL Ribosomal protein L11 methyltransferase OS=Burkholderia xenovorans
(strain LB400) GN=prmA PE=3 SV=1
Length = 300
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 136/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
L+ ++HA + FS+A L GA S SV++ D D + + P+
Sbjct: 6 LIAELAREHA-EEFSDALLELGALSVSVEDADADTPDEQPLFGEPGLTPDRTAWQRSRVI 64
Query: 125 ---CKDVDECILNTA--NSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
+ + +L TA N IGL+ P + V+ E+ +W++ Q F P+++ + +W+VP
Sbjct: 65 ALLAPEHEPAVLLTAAANEIGLEAAPSFTVREVEEQDWVRLTQSQFDPIKIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
W + +A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 125 WHDAPDPEALVLELDPGLAFGTGSHPTTRLCMEWLEQSVQPGQSVLDYGCGSGILAILAK 184
Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA N+ N + + +PD
Sbjct: 185 KCGADPVYGIDIDPQAVESARHNSERN----RAEVTYGLPD------------------- 221
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
T E+D+V+ANIL NPL +A + S KPG + +SGIL+ Q
Sbjct: 222 ------ACPTGEFDIVVANILSNPLKLMASMLSSKVKPGGRIALSGILARQ 266
>sp|B2SYT3|PRMA_BURPP Ribosomal protein L11 methyltransferase OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=prmA PE=3 SV=1
Length = 300
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 134/291 (46%), Gaps = 68/291 (23%)
Query: 75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
L+ ++HA + FS+A L GA S SV++ D D + + P+
Sbjct: 6 LIAELAREHA-EEFSDALLELGALSVSVEDADADTPDEQPLFGEPGLTPDRTAWQRSRVI 64
Query: 125 ---CKDVDECILNTA--NSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
+ + +L TA N IGL P + V+ E +W++ Q F P+++ + +W+VP
Sbjct: 65 ALLAPEHEPAVLLTAAANEIGLPAAPSFTVREVEDQDWVRLTQSQFDPIKIGERIWVVPS 124
Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT---------- 225
W + +A + L+PGLAFGTG H TT+LC+ L ++ + LDYG
Sbjct: 125 WHDAPDPEALVLELDPGLAFGTGSHPTTRLCMEWLEQSVQPEQSVLDYGCGSGILAILAK 184
Query: 226 ---------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
+DIDPQ ++SA N+ N + ++ +PD
Sbjct: 185 KCGANPVYGIDIDPQAVESARHNSERN----RAEVIYGLPDEC----------------- 223
Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
T E+D+V+ANIL NPL +A + S KPG + +SGIL+ Q
Sbjct: 224 --------PTGEFDIVVANILSNPLKLMASMLTSKVKPGGKIALSGILARQ 266
>sp|Q81ZZ9|PRMA_NITEU Ribosomal protein L11 methyltransferase OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=prmA PE=3 SV=1
Length = 313
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 120/261 (45%), Gaps = 48/261 (18%)
Query: 90 EAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEV 149
E PL FG +D+ A+ + + E ++DE I A IGL +P Y++
Sbjct: 42 EQPL-FGEPGAPLDQFWQQAE-------VTVLLEENANIDEIIQGVAEVIGLPALPEYQL 93
Query: 150 KMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHATTKL 205
+ +W++ Q F P+ ++ LW+VP W + A ++ L+PGLAFGTG H TT+L
Sbjct: 94 AQVMEQDWVRLTQAQFEPIRISSRLWVVPSWHEPPDPAAISLRLDPGLAFGTGSHPTTRL 153
Query: 206 CLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNAALNNIG 246
CL L ++ G+ LDYG +DIDP I ++ NA N
Sbjct: 154 CLTWLDQFLQPGDSVLDYGCGSGILAIAALKFGADRVTGMDIDPNAITASLDNARNNFCD 213
Query: 247 PKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLAD 306
P ++ V P + + R +E +V+ANIL NPL+ LA
Sbjct: 214 PDRLLFTTV----LPPLVEDD-------------RASAEWAPVTIVVANILANPLIMLAP 256
Query: 307 HIVSYAKPGAVVGISGILSEQ 327
++ +PG + +SGIL Q
Sbjct: 257 VLMKALQPGGRIVLSGILETQ 277
>sp|Q0AEV2|PRMA_NITEC Ribosomal protein L11 methyltransferase OS=Nitrosomonas eutropha
(strain C91) GN=prmA PE=3 SV=1
Length = 313
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 40/230 (17%)
Query: 121 IFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW 180
+ E DVDE + A +G+ +P Y++ + +W++ Q F P++++ LW+VP W
Sbjct: 65 LLEENTDVDEIVQAVARVMGISALPDYQLTQVVEQDWVRLTQAQFEPIKISSRLWVVPSW 124
Query: 181 ----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG------------ 224
+ A N+ L+PGLAFGTG H TT+LCL L +K G+ LDYG
Sbjct: 125 HDLPDPAAINLRLDPGLAFGTGSHPTTQLCLGWLDKFLKPGDSVLDYGCGSGILAIAALK 184
Query: 225 -------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS 277
VDIDP I ++ +NA N K+ +F ++++ G
Sbjct: 185 LGADRVMGVDIDPNAITASLENARNNLCDLDKL--------SFTTALSFSGGGDPADTRQ 236
Query: 278 HKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
H + VV+ANIL NPL+ LA ++S +PG + +SGIL Q
Sbjct: 237 HPVF---------VVVANILANPLIMLAPVLMSALQPGGRIVLSGILETQ 277
>sp|A4SJL7|PRMA_AERS4 Ribosomal protein L11 methyltransferase OS=Aeromonas salmonicida
(strain A449) GN=prmA PE=3 SV=1
Length = 292
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 49/204 (24%)
Query: 147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
Y+V+ E +W+++ + FHP++ + LWI P W N A N++L+PGLAFGTG H T
Sbjct: 83 YKVEQLEDKDWVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPT 142
Query: 203 TKLCLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNAALN 243
T LCL L L G+ +D+G +DIDPQ I+++H NA N
Sbjct: 143 TALCLQWLDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERN 202
Query: 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ 303
+ +++L+L D+ + E DVV+ANIL PL +
Sbjct: 203 GVA-GQIELYLPADQ-------------------------PQDVEADVVVANILAGPLRE 236
Query: 304 LADHIVSYAKPGAVVGISGILSEQ 327
LA I + KPG+++ +SG+L Q
Sbjct: 237 LAPLIAGHGKPGSLMALSGVLESQ 260
>sp|P60091|PRMA_CHRVO Ribosomal protein L11 methyltransferase OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=prmA PE=3 SV=1
Length = 298
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 99/207 (47%), Gaps = 52/207 (25%)
Query: 144 IPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV----QATNIILNPGLAFGTGE 199
+P Y V+ E+ +W++ Q F P+ ++ LWI P W+ A N+ L+PGLAFGTG
Sbjct: 87 MPAYSVERVEEQDWVRLTQSQFEPIRISDRLWITPTWHEAPAPNAVNLQLDPGLAFGTGS 146
Query: 200 HATTKLCLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNA 240
H TT+LCL L ++G E LDYG +DID Q ++++ NA
Sbjct: 147 HPTTRLCLQWLDKQLQGNESVLDYGCGSGILAIAALKLGAASAVGIDIDQQAVRASQDNA 206
Query: 241 ALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP 300
N + D P++ + +YDVV+ANIL NP
Sbjct: 207 EQNGVKA---------DFFLPNA--------------------NPAAQYDVVLANILANP 237
Query: 301 LLQLADHIVSYAKPGAVVGISGILSEQ 327
L L D + S+ K G + +SGIL+EQ
Sbjct: 238 LRMLGDLLASHVKTGGRIVLSGILAEQ 264
>sp|Q9HUW3|PRMA_PSEAE Ribosomal protein L11 methyltransferase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=prmA PE=3 SV=1
Length = 294
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D + ++ + ++F
Sbjct: 2 PWLQVRLAITPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLGTTPLWSRTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV- 182
D + + A G ++P + V+ +W + ++F P+ + LWIVP W+
Sbjct: 62 ADTDETALLAHLALLTG-GDLPEHHVEEIADQDWERSWMDNFQPMRFGRRLWIVPSWHAA 120
Query: 183 ---QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEPDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQELAGRQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DIDPQ ++++ NA+ N I P + ++L P+ + +R
Sbjct: 181 ERAVGTDIDPQALEASRDNASRNGIEPARFPVYL------PADLPQR------------- 221
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 222 -------QADVLVANILAGPLVSLAPQLTGLVRPGGLLALSGILAEQ 261
>sp|Q02FH0|PRMA_PSEAB Ribosomal protein L11 methyltransferase OS=Pseudomonas aeruginosa
(strain UCBPP-PA14) GN=prmA PE=3 SV=1
Length = 294
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D + ++ + ++F
Sbjct: 2 PWLQVRLAITPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLGTTPLWSRTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV- 182
D + + A G ++P + V+ +W + ++F P+ + LWIVP W+
Sbjct: 62 ADTDETALLAHLALLTG-GDLPEHHVEEIADQDWERSWMDNFQPMRFGRRLWIVPSWHAA 120
Query: 183 ---QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEPDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQELAGRQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DIDPQ ++++ NA+ N I P + ++L P+ + +R
Sbjct: 181 ERAVGTDIDPQALEASRDNASRNGIEPARFPVYL------PADLPQR------------- 221
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 222 -------QADVLVANILAGPLVSLAPQLTGLVRPGGLLALSGILAEQ 261
>sp|B7V1R2|PRMA_PSEA8 Ribosomal protein L11 methyltransferase OS=Pseudomonas aeruginosa
(strain LESB58) GN=prmA PE=3 SV=1
Length = 294
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D + ++ + ++F
Sbjct: 2 PWLQVRLAITPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLGTTPLWSRTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV- 182
D + + A G ++P + V+ +W + ++F P+ + LWIVP W+
Sbjct: 62 ADTDETALLAHLALLTG-GDLPEHHVEEIADQDWERSWMDNFQPMRFGRRLWIVPSWHAA 120
Query: 183 ---QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEPDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQELAGRQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DIDPQ ++++ NA+ N I P + ++L P+ + +R
Sbjct: 181 ERAVGTDIDPQALEASRDNASRNGIEPARFPVYL------PADLPQR------------- 221
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 222 -------QADVLVANILAGPLVSLAPQLTGLVRPGGLLALSGILAEQ 261
>sp|Q2SZE1|PRMA_BURTA Ribosomal protein L11 methyltransferase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=prmA PE=3 SV=1
Length = 300
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 132/285 (46%), Gaps = 68/285 (23%)
Query: 81 QKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------------C 125
++HA + S+A + GA S SV++ D D + + PE
Sbjct: 12 REHA-EALSDALVELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVIALVDAA 70
Query: 126 KDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN---- 181
+D + AN GL E PR+E++ E+ +W++ Q F P+ + + +W+VP W+
Sbjct: 71 QDPAVLLAAAANEAGLAETPRFELREVEEQDWVRLTQSQFDPIHIGEKIWVVPSWHDAPE 130
Query: 182 VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------------- 224
A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 131 PDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGN 190
Query: 225 --TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRG 282
+DIDPQ +++A QN+ N + + +PD P+
Sbjct: 191 VTGIDIDPQAVEAARQNSERN----RADVTYGLPD-DCPAG------------------- 226
Query: 283 ISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----EFDIVVANILSNPLKLMASMLTSKVKPGGRIALSGVLARQ 266
>sp|A6VCV6|PRMA_PSEA7 Ribosomal protein L11 methyltransferase OS=Pseudomonas aeruginosa
(strain PA7) GN=prmA PE=3 SV=1
Length = 294
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D + ++ + ++F
Sbjct: 2 PWLQVRLAITPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLGTTPLWSRTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV- 182
D + + A G E+P + ++ +W + ++F P+ + LWIVP W+
Sbjct: 62 ADTDETALLAHLALLTG-GELPEHHIEEIADQDWERSWMDNFQPMRFGRRLWIVPSWHAA 120
Query: 183 ---QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEPDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQELAGRQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DIDPQ ++++ NA+ N I P + ++L D P
Sbjct: 181 ERAVGTDIDPQALEASRDNASRNGIEPARFPVYLPAD--LPR------------------ 220
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
++ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 221 ------QQADVLVANILAGPLVSLAPQLTGLVRPGGLLALSGILAEQ 261
>sp|Q1LIT8|PRMA_RALME Ribosomal protein L11 methyltransferase OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=prmA PE=3 SV=1
Length = 304
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 127/286 (44%), Gaps = 68/286 (23%)
Query: 80 CQKHALDMFSEAPLCFGASSTSVDEHDNDA-DENS--------------DEIYIDSIFPE 124
Q+ A + +S+A GA S SV++ D D DE + + ++F E
Sbjct: 11 AQEQA-EAWSDALFDLGALSVSVEDADADTPDEQPLFGEPGLEPTRLAWNRSRVVALFDE 69
Query: 125 CKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW---- 180
D + AN++ + +P Y ++ E +W++ Q F P+ + + +W+VP W
Sbjct: 70 ETDPALVVTAAANALKVDPVPPYALRGVEDQDWVRLTQSQFEPIRIGEKIWVVPSWHDAP 129
Query: 181 NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG---------------- 224
+ A + L+PGLAFGTG H TT+LC+ L + ++ GE LDYG
Sbjct: 130 DPDAVILELDPGLAFGTGSHPTTRLCMQWLEANVRAGETVLDYGCGSGILAIVAKKLGAG 189
Query: 225 ---TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIR 281
+DIDP + ++ NA N + P S++E
Sbjct: 190 DTVGIDIDPNAVDASRYNAERNRVEASF---------ALPESVSEAT------------- 227
Query: 282 GISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
YD+V+ANIL NPL +A + + +PG + +SG+L Q
Sbjct: 228 -------YDLVVANILSNPLKLMAAMLSARVRPGGRLILSGVLERQ 266
>sp|Q88DK7|PRMA_PSEPK Ribosomal protein L11 methyltransferase OS=Pseudomonas putida
(strain KT2440) GN=prmA PE=3 SV=2
Length = 292
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 131/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D N+ ++ + ++F
Sbjct: 2 PWLQVRLAISPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLNTTPLWSHTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN-- 181
D ++ + G E+P ++ ++ E +W + ++F P+ + LWIVP W+
Sbjct: 62 ANADPEQVFAHLRLLTG-AELPEHQAEVIEDQDWERSWMDNFQPMRFGRRLWIVPSWHDA 120
Query: 182 --VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEKDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQQLEGTQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DID Q I+++ NA N I +K+ L+L P M
Sbjct: 181 REAVGTDIDVQAIEASRDNAQRNGIADEKLALYL------PEHM---------------- 218
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 219 ----PAMQADVLVANILAGPLVSLAPQLSGLVRPGGLLALSGILAEQ 261
>sp|A5W9K3|PRMA_PSEP1 Ribosomal protein L11 methyltransferase OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=prmA PE=3 SV=1
Length = 292
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 131/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D N+ ++ + ++F
Sbjct: 2 PWLQVRLAISPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLNTTPLWSHTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN-- 181
D ++ + G E+P ++ ++ E +W + ++F P+ + LWIVP W+
Sbjct: 62 ADADPEQVFAHLRLLTG-AELPEHQAEVIEDQDWERSWMDNFQPMRFGRRLWIVPSWHDA 120
Query: 182 --VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEKDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQQLEGTQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DID Q I+++ NA N I +K+ L+L P M
Sbjct: 181 REAVGTDIDVQAIEASRDNAQRNGIADEKLALYL------PEHM---------------- 218
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 219 ----PAMQADVLVANILAGPLVSLAPQLSGLVRPGGLLALSGILAEQ 261
>sp|B0KJZ2|PRMA_PSEPG Ribosomal protein L11 methyltransferase OS=Pseudomonas putida
(strain GB-1) GN=prmA PE=3 SV=1
Length = 292
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D N+ ++ + ++F
Sbjct: 2 PWLQVRLAISPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLNTTPLWSHTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN-- 181
D ++ + G E+P ++ ++ E +W + ++F P+ + LWIVP W+
Sbjct: 62 ADADPEQVFAHLRLLTG-AELPEHQAEVIEDQDWERSWMDNFQPMRFGRRLWIVPSWHEA 120
Query: 182 --VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEKDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQQLDGTQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DID Q I+++ NA N + +K+ L+L P M
Sbjct: 181 REAVGTDIDVQAIEASRDNAQRNGVADEKLALYL------PEHM---------------- 218
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 219 ----PAMQADVLVANILAGPLVSLAPQLSGLVRPGGLLALSGILAEQ 261
>sp|B1J5U4|PRMA_PSEPW Ribosomal protein L11 methyltransferase OS=Pseudomonas putida
(strain W619) GN=prmA PE=3 SV=1
Length = 292
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D N+ ++ + ++F
Sbjct: 2 PWLQVRLAISPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLNTTPLWSHTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN-- 181
D ++ + G E+P ++ ++ E +W + ++F P+ + LWIVP W+
Sbjct: 62 ADADPEQVFAHLRLLTG-AELPEHQAEVIEDQDWERSWMDNFQPMRFGRRLWIVPSWHEA 120
Query: 182 --VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEKDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQQLEGTQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DID Q I+++ NA N + +K+ L+L P M
Sbjct: 181 REAVGTDIDVQAIEASRDNAQRNGVADEKLALYL------PEHMP--------------- 219
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 220 -----AMQADVLVANILAGPLVSLAPQLSGLVRPGGLLALSGILAEQ 261
>sp|A1V0M1|PRMA_BURMS Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain SAVP1) GN=prmA PE=3 SV=1
Length = 300
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 68/285 (23%)
Query: 81 QKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------------C 125
++HA + S+A + GA S SV++ D D + + PE
Sbjct: 12 REHA-EALSDALVELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVIALVDAT 70
Query: 126 KDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN---- 181
+D + AN GL + PR+E++ E+ +W++ Q F P+ + + +W+VP W+
Sbjct: 71 QDPAVLLAAAANEAGLAQTPRFELREVEEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQ 130
Query: 182 VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------------- 224
A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 131 PDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGR 190
Query: 225 --TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRG 282
+DIDPQ +++A N+ N + + +PD + DG
Sbjct: 191 VTGIDIDPQAVEAARHNSERN----RADVTYGLPD--------DCPDG------------ 226
Query: 283 ISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|Q62GX2|PRMA_BURMA Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain ATCC 23344) GN=prmA PE=3 SV=1
Length = 300
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 68/285 (23%)
Query: 81 QKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------------C 125
++HA + S+A + GA S SV++ D D + + PE
Sbjct: 12 REHA-EALSDALVELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVIALVDAT 70
Query: 126 KDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN---- 181
+D + AN GL + PR+E++ E+ +W++ Q F P+ + + +W+VP W+
Sbjct: 71 QDPAVLLAAAANEAGLAQTPRFELREVEEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQ 130
Query: 182 VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------------- 224
A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 131 PDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGR 190
Query: 225 --TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRG 282
+DIDPQ +++A N+ N + + +PD + DG
Sbjct: 191 VTGIDIDPQAVEAARHNSERN----RADVTYGLPD--------DCPDG------------ 226
Query: 283 ISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|A2S5P8|PRMA_BURM9 Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain NCTC 10229) GN=prmA PE=3 SV=1
Length = 300
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 68/285 (23%)
Query: 81 QKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------------C 125
++HA + S+A + GA S SV++ D D + + PE
Sbjct: 12 REHA-EALSDALVELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVIALVDAT 70
Query: 126 KDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN---- 181
+D + AN GL + PR+E++ E+ +W++ Q F P+ + + +W+VP W+
Sbjct: 71 QDPAVLLAAAANEAGLAQTPRFELREVEEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQ 130
Query: 182 VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------------- 224
A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 131 PDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGR 190
Query: 225 --TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRG 282
+DIDPQ +++A N+ N + + +PD + DG
Sbjct: 191 VTGIDIDPQAVEAARHNSERN----RADVTYGLPD--------DCPDG------------ 226
Query: 283 ISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|A3MRB1|PRMA_BURM7 Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain NCTC 10247) GN=prmA PE=3 SV=1
Length = 300
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 68/285 (23%)
Query: 81 QKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------------C 125
++HA + S+A + GA S SV++ D D + + PE
Sbjct: 12 REHA-EALSDALVELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVIALVDAT 70
Query: 126 KDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN---- 181
+D + AN GL + PR+E++ E+ +W++ Q F P+ + + +W+VP W+
Sbjct: 71 QDPAVLLAAAANEAGLAQTPRFELREVEEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQ 130
Query: 182 VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------------- 224
A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 131 PDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGR 190
Query: 225 --TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRG 282
+DIDPQ +++A N+ N + + +PD + DG
Sbjct: 191 VTGIDIDPQAVEAARHNSERN----RADVTYGLPD--------DCPDG------------ 226
Query: 283 ISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|A3NDQ7|PRMA_BURP6 Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain 668) GN=prmA PE=3 SV=1
Length = 300
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 68/285 (23%)
Query: 81 QKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------------C 125
++HA + S+A + GA S SV++ D D + + PE
Sbjct: 12 REHA-EALSDALVELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVIALVDAT 70
Query: 126 KDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN---- 181
+D + AN GL + PR+E++ E+ +W++ Q F P+ + + +W+VP W+
Sbjct: 71 QDPAVLLAAAANEAGLAQAPRFELREVEEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQ 130
Query: 182 VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------------- 224
A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 131 PDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGR 190
Query: 225 --TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRG 282
+DIDPQ +++A N+ N + + +PD + DG
Sbjct: 191 VTGIDIDPQAVEAARHNSERN----RADVTYGLPD--------DCPDG------------ 226
Query: 283 ISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|Q3JNI0|PRMA_BURP1 Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain 1710b) GN=prmA PE=3 SV=1
Length = 300
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 68/285 (23%)
Query: 81 QKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------------C 125
++HA + S+A + GA S SV++ D D + + PE
Sbjct: 12 REHA-EALSDALVELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVIALVDAT 70
Query: 126 KDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN---- 181
+D + AN GL + PR+E++ E+ +W++ Q F P+ + + +W+VP W+
Sbjct: 71 QDPAVLLAAAANEAGLAQAPRFELREVEEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQ 130
Query: 182 VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------------- 224
A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 131 PDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGR 190
Query: 225 --TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRG 282
+DIDPQ +++A N+ N + + +PD + DG
Sbjct: 191 VTGIDIDPQAVEAARHNSERN----RADVTYGLPD--------DCPDG------------ 226
Query: 283 ISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|Q63QN9|PRMA_BURPS Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain K96243) GN=prmA PE=3 SV=1
Length = 300
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 68/285 (23%)
Query: 81 QKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------------C 125
++HA + S+A + GA S SV++ D D + + PE
Sbjct: 12 REHA-EALSDALVELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVIALVDAT 70
Query: 126 KDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN---- 181
+D + AN GL PR+E++ E+ +W++ Q F P+ + + +W+VP W+
Sbjct: 71 QDPAVLLAAAANEAGLARTPRFELREVEEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQ 130
Query: 182 VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------------- 224
A + L+PGLAFGTG H TT+LC+ L ++ G+ LDYG
Sbjct: 131 PDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGR 190
Query: 225 --TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRG 282
+DIDPQ +++A N+ N + + +PD + DG
Sbjct: 191 VTGIDIDPQAVEAARHNSERN----RADVTYGLPD--------DCPDG------------ 226
Query: 283 ISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
E+D+V+ANIL NPL +A + S KPG + +SG+L+ Q
Sbjct: 227 -----EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266
>sp|A0KNJ1|PRMA_AERHH Ribosomal protein L11 methyltransferase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=prmA
PE=3 SV=1
Length = 292
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 49/204 (24%)
Query: 147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
Y+V+ E +W+++ + FHP++ + LWI P W N A N++L+PGLAFGTG H T
Sbjct: 83 YKVEQLEDKDWVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPT 142
Query: 203 TKLCLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNAALN 243
T LCL L L G+ +D+G +DIDPQ I+++ NA N
Sbjct: 143 TALCLQWLDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAERN 202
Query: 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ 303
+ D I YL + + + + E DVV+ANIL PL +
Sbjct: 203 GV----------------------ADQIELYLPADQPQDV----EADVVVANILAGPLRE 236
Query: 304 LADHIVSYAKPGAVVGISGILSEQ 327
LA I + K G+++ +SG+L Q
Sbjct: 237 LAPLIAGHGKAGSLMALSGVLESQ 260
>sp|Q7VPN5|PRMA_HAEDU Ribosomal protein L11 methyltransferase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=prmA PE=3 SV=1
Length = 293
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 49/204 (24%)
Query: 147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
++V+ E +W ++ ++FHP++ + LWI P W + +A NI+L+PGLAFGTG H T
Sbjct: 85 HKVEQIEDKDWEREWMDNFHPMQFGQRLWICPSWREVPDEKAVNIMLDPGLAFGTGTHPT 144
Query: 203 TKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN 243
T LCL L L G+ +D+G +DIDPQ I ++ NAA N
Sbjct: 145 TALCLQWLDGLDLTGKTVIDFGCGSGILAISALKLGAKQAIGIDIDPQAILASQNNAAAN 204
Query: 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ 303
+ +++L L D+ P ++ + DVV+ANIL PL +
Sbjct: 205 GVA-DRLQLFLAKDQ--PQAL-----------------------QADVVVANILAGPLKE 238
Query: 304 LADHIVSYAKPGAVVGISGILSEQ 327
LA +I++ KP +G+SGIL+ Q
Sbjct: 239 LAPNIMTLVKPQGYLGLSGILATQ 262
>sp|B8F6T6|PRMA_HAEPS Ribosomal protein L11 methyltransferase OS=Haemophilus parasuis
serovar 5 (strain SH0165) GN=prmA PE=3 SV=1
Length = 294
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 13/186 (6%)
Query: 147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
Y+++ E +W ++ ++FHP++ K LWI P W + A N++L+PGLAFGTG H T
Sbjct: 85 YKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHPT 144
Query: 203 TKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKK-MKLHLVPDRTFP 261
T LCL L SL + +D+G S A +G KK + + + P
Sbjct: 145 TALCLTWLDSLDLTDKTVIDFGC--------GSGILAIAALKLGAKKAIGIDIDPQAILA 196
Query: 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321
S N V+G+ + L + + DVVIANIL PL +LA I++ KP +G+S
Sbjct: 197 SQNNAEVNGVADRLQLFLTKDQPQNLIADVVIANILAGPLKELAPQIITLVKPQGNLGLS 256
Query: 322 GILSEQ 327
GIL+ Q
Sbjct: 257 GILATQ 262
>sp|B0BRD1|PRMA_ACTPJ Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=prmA PE=3
SV=1
Length = 293
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 49/204 (24%)
Query: 147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
++++ E +W ++ ++FHP++ K LWI P W + A N++L+PGLAFGTG H T
Sbjct: 85 HKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPT 144
Query: 203 TKLCLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNAALN 243
T LCL L SL G+ +D+G +DIDPQ I ++ NA N
Sbjct: 145 TALCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEAN 204
Query: 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ 303
+ +++L L D+ P + + DVV+ANIL PL +
Sbjct: 205 GVA-DRLQLFLAKDQ--PQDL-----------------------QADVVVANILAGPLKE 238
Query: 304 LADHIVSYAKPGAVVGISGILSEQ 327
LA +I++ KP +G+SGIL+ Q
Sbjct: 239 LAPNIITLVKPQGDLGLSGILATQ 262
>sp|A3N2I5|PRMA_ACTP2 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=prmA PE=3
SV=1
Length = 293
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 49/204 (24%)
Query: 147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
++++ E +W ++ ++FHP++ K LWI P W + A N++L+PGLAFGTG H T
Sbjct: 85 HKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPT 144
Query: 203 TKLCLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNAALN 243
T LCL L SL G+ +D+G +DIDPQ I ++ NA N
Sbjct: 145 TALCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEAN 204
Query: 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ 303
+ +++L L D+ P + + DVV+ANIL PL +
Sbjct: 205 GVA-DRLQLFLAKDQ--PQDL-----------------------QADVVVANILAGPLKE 238
Query: 304 LADHIVSYAKPGAVVGISGILSEQ 327
LA +I++ KP +G+SGIL+ Q
Sbjct: 239 LAPNIITLVKPQGDLGLSGILATQ 262
>sp|B3GYL9|PRMA_ACTP7 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=prmA PE=3
SV=1
Length = 293
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 49/204 (24%)
Query: 147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
++++ E +W ++ ++FHP++ K LWI P W + A N++L+PGLAFGTG H T
Sbjct: 85 HKIEQIEDKDWEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPT 144
Query: 203 TKLCLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNAALN 243
T LCL L SL G+ +D+G +DIDPQ I ++ NA N
Sbjct: 145 TALCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEAN 204
Query: 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ 303
+ +++L L D+ P + + DVV+ANIL PL +
Sbjct: 205 GVA-DRLQLFLAKDQ--PQDL-----------------------QADVVVANILAGPLKE 238
Query: 304 LADHIVSYAKPGAVVGISGILSEQ 327
LA +I++ KP +G+SGIL+ Q
Sbjct: 239 LAPNIITLVKPQGDLGLSGILATQ 262
>sp|A1SAM0|PRMA_SHEAM Ribosomal protein L11 methyltransferase OS=Shewanella amazonensis
(strain ATCC BAA-1098 / SB2B) GN=prmA PE=3 SV=1
Length = 295
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 49/205 (23%)
Query: 146 RYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHA 201
+Y+++ E +W+++ +S+HP++ K LWI P W + +A N+IL+PGLAFGTG H
Sbjct: 84 KYKIEQIEDKDWVREWMDSYHPIQFGKRLWICPSWREVPDPEAVNVILDPGLAFGTGTHP 143
Query: 202 TTKLCLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNAAL 242
TT LCL L SL G+ +D+G +DID Q I ++ NA
Sbjct: 144 TTALCLEWLDSLDLAGKDIIDFGCGSGILAVAALKLGAAKATGIDIDYQAIDASRDNAQR 203
Query: 243 NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLL 302
N + ++ L+L D+ P+ + + +V++ANIL PL
Sbjct: 204 NQV-EDRLALYLPEDQ--PAGL-----------------------KAEVLVANILAGPLR 237
Query: 303 QLADHIVSYAKPGAVVGISGILSEQ 327
+LA I + +PG + +SG+L EQ
Sbjct: 238 ELAPLIQALVQPGGKLALSGLLKEQ 262
>sp|Q6DAJ5|PRMA_ERWCT Ribosomal protein L11 methyltransferase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=prmA PE=3 SV=1
Length = 295
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 49/205 (23%)
Query: 146 RYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHA 201
+++++ E +W ++ ++FHP++ K LWI P W + A N++L+PGLAFGTG H
Sbjct: 84 KHKIEQLEDKDWEREWMDNFHPMQFGKRLWICPSWREIPDPSAVNVMLDPGLAFGTGTHP 143
Query: 202 TTKLCLLLLRSLIKGGELFLDYG-------------------TVDIDPQVIKSAHQNAAL 242
TT LCL L L G+ +D+G +DIDPQ I+++ NA
Sbjct: 144 TTSLCLQWLDGLDLEGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQR 203
Query: 243 NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLL 302
N + ++++L+L D+ P+ ++ DVV+ANIL PL
Sbjct: 204 NGVS-ERLELYLPKDQ--PADLS-----------------------ADVVVANILAGPLR 237
Query: 303 QLADHIVSYAKPGAVVGISGILSEQ 327
+LA I K G +G+SG+LS Q
Sbjct: 238 ELAPLISDLPKAGGHLGLSGVLSTQ 262
>sp|C3K6W5|PRMA_PSEFS Ribosomal protein L11 methyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=prmA PE=3 SV=1
Length = 292
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + + N+ ++ + ++F
Sbjct: 2 PWLQVRLAISPEQAETYEDAFLEVGAVSVTFMDAEDQPIFEPELNTTPLWSHTHLLALFE 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV- 182
+ D +L + +P + ++ E +W + ++F P+ + LWIVP W+
Sbjct: 62 DGTDA-AAVLAHMELLTGGPLPEHHSEVIEDQDWERSWMDNFQPMRFGQRLWIVPSWHAA 120
Query: 183 ---QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L LD+G
Sbjct: 121 PEPDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQDLTDSHVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DID Q ++++ NA NNI P+ FP + E++ +
Sbjct: 181 KEAVGTDIDVQALEASRDNAGRNNI----------PEGKFPLYLPEQLPQV--------- 221
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + S KPG + +SGIL+EQ
Sbjct: 222 -------QADVLVANILAGPLVSLAPQLSSLVKPGGRLALSGILAEQ 261
>sp|Q9CLW2|PRMA_PASMU Ribosomal protein L11 methyltransferase OS=Pasteurella multocida
(strain Pm70) GN=prmA PE=3 SV=1
Length = 293
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 49/210 (23%)
Query: 141 LKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFG 196
L E Y+++ E +W ++ ++FHP+ K LWI P W + ATN++L+PGLAFG
Sbjct: 79 LVESSVYKIEQIEDKDWEREWMDNFHPMRFGKRLWICPSWREVPDENATNVMLDPGLAFG 138
Query: 197 TGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAH 237
TG H TT LCL L SL + +D+G +DIDPQ I ++
Sbjct: 139 TGTHPTTALCLEWLDSLDLQDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASR 198
Query: 238 QNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL 297
NA N + +++L L D+ P+ + + DVV+ANIL
Sbjct: 199 NNAEQNGVA-DRLQLFLSEDK--PADL-----------------------KADVVVANIL 232
Query: 298 LNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
PL +L I KP V+G+SGIL+ Q
Sbjct: 233 AGPLKELYPVIRQLVKPNGVLGLSGILATQ 262
>sp|Q0K6X3|PRMA_CUPNH Ribosomal protein L11 methyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=prmA PE=3 SV=1
Length = 300
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 123/280 (43%), Gaps = 67/280 (23%)
Query: 86 DMFSEAPLCFGASSTSVDEHDNDADENS---------------DEIYIDSIFPECKDVDE 130
+ +S+A GA S SV++ D D + + + ++F + D
Sbjct: 16 EAWSDALFDLGALSVSVEDADADTPDEQPLFGEPGLEPKQLAWNRSRVVALFGDDADPAV 75
Query: 131 CILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN----VQATN 186
+ AN +G+ +P Y+++ E +W++ Q F P+ + + +W+VP W+ A
Sbjct: 76 VVAAAANQLGIDPVPAYQLRAVEDQDWVRLTQSQFEPIRIGERIWVVPSWHDAPEPDAVV 135
Query: 187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG-------------------TVD 227
+ L+PGLAFGTG H TT+LC+ L +K GE LDYG +D
Sbjct: 136 LELDPGLAFGTGSHPTTRLCMQWLEQNLKPGETVLDYGCGSGILAIVARKLGAGDTVGID 195
Query: 228 IDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETE 287
IDP ++++ NA N + P S++E
Sbjct: 196 IDPNAVEASRYNAERNRVEASF---------ALPESVSE--------------------A 226
Query: 288 EYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
YD+V+ANIL NPL +A + + + G + +SG+L Q
Sbjct: 227 SYDLVVANILSNPLKLMAAMLSARVRAGGRLVLSGVLERQ 266
>sp|Q0I1Y6|PRMA_HAES1 Ribosomal protein L11 methyltransferase OS=Haemophilus somnus
(strain 129Pt) GN=prmA PE=3 SV=1
Length = 296
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 49/210 (23%)
Query: 141 LKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFG 196
L E Y+++ E +W ++ ++FHP++ K LWI P W + A N++L+PGLAFG
Sbjct: 79 LDENTAYKIEQIEDKDWEREWMDNFHPMKFGKRLWICPSWREIPDENAINVMLDPGLAFG 138
Query: 197 TGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAH 237
TG H TT LCL L SL G+ +D+G +DIDPQ I +++
Sbjct: 139 TGTHPTTALCLEWLDSLDLTGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASY 198
Query: 238 QNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL 297
NA N + ++++L L ++ P+ + + DVVIANIL
Sbjct: 199 NNAEQNGVA-ERLQLFLSEEK--PTDL-----------------------QADVVIANIL 232
Query: 298 LNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
PL +L I + KP +G+SGILS Q
Sbjct: 233 AGPLKELYPIISNLVKPQGDLGLSGILSTQ 262
>sp|B0UV84|PRMA_HAES2 Ribosomal protein L11 methyltransferase OS=Haemophilus somnus
(strain 2336) GN=prmA PE=3 SV=1
Length = 296
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 49/210 (23%)
Query: 141 LKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFG 196
L E Y+++ E +W ++ ++FHP++ K LWI P W + A N++L+PGLAFG
Sbjct: 79 LDENTAYKIEQIEDKDWEREWMDNFHPMKFGKRLWICPSWREIPDENAINVMLDPGLAFG 138
Query: 197 TGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAH 237
TG H TT LCL L SL G+ +D+G +DIDPQ I +++
Sbjct: 139 TGTHPTTALCLEWLDSLDLTGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASY 198
Query: 238 QNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL 297
NA N + ++++L L ++ P+ + + DVVIANIL
Sbjct: 199 NNAEQNGVA-ERLQLFLSEEK--PTDL-----------------------QADVVIANIL 232
Query: 298 LNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
PL +L I + KP +G+SGILS Q
Sbjct: 233 AGPLKELYPIISNLVKPQGDLGLSGILSTQ 262
>sp|Q1I4C5|PRMA_PSEE4 Ribosomal protein L11 methyltransferase OS=Pseudomonas entomophila
(strain L48) GN=prmA PE=3 SV=1
Length = 292
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 58/287 (20%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDN---DADENSDEIY----IDSIFP 123
P+L VR+ + + +A L GA S T +D D + D N+ ++ + ++F
Sbjct: 2 PWLQVRLAISPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLNTTPLWSHTHLLALF- 60
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN-- 181
E E + + ++P ++ ++ E +W + ++F P+ + LWIVP W+
Sbjct: 61 EADTQPEAVFAHLQLLTGHDLPEHQAEVIEDQDWERSWMDNFQPMRFGQRLWIVPSWHEA 120
Query: 182 --VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
A N++L+PGLAFGTG H TT LCL L G LD+G
Sbjct: 121 PEKDAVNLLLDPGLAFGTGTHPTTALCLEWLDGQQLEGTQVLDFGCGSGILAIAALLLGA 180
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
DID Q ++++ NA N I L+L P M
Sbjct: 181 REAVGTDIDVQALEASRDNAQRNGIADDLFALYL------PEHM---------------- 218
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
+ DV++ANIL PL+ LA + +PG ++ +SGIL+EQ
Sbjct: 219 ----PAMQADVLVANILAGPLVSLAPQLSGLVRPGGLLALSGILAEQ 261
>sp|C6DIJ9|PRMA_PECCP Ribosomal protein L11 methyltransferase OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=prmA PE=3
SV=1
Length = 295
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 57/287 (19%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSV-DEHDNDADE---NSDEIYIDS----IFP 123
P++ ++I + + +A + GA S + D HD E ++ D+ ++
Sbjct: 2 PWIQLKINTSGNVAEQLGDAMIESGAVSVTFQDTHDTPVFEPLPGETRLWGDTDAIALYD 61
Query: 124 ECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW--- 180
D+++ I L +++++ E +W ++ ++FHP++ K LWI P W
Sbjct: 62 AETDMNDVIAMLEQEPLLGVGFKHKIEQLEDKDWEREWMDNFHPMQFGKRLWICPSWRDI 121
Query: 181 -NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------------- 224
+ A N++L+PGLAFGTG H TT LCL L L G+ +D+G
Sbjct: 122 PDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLEGKTIIDFGCGSGILAIAALKLGA 181
Query: 225 ----TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280
+DIDPQ I+++ NA N + ++++L+L D+ P+ ++
Sbjct: 182 ARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLPKDQ--PADLS--------------- 223
Query: 281 RGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
DVV+ANIL PL +LA I K G +G+SG+L+ Q
Sbjct: 224 --------ADVVVANILAGPLRELAPLISDLPKAGGHLGLSGVLATQ 262
>sp|Q2NWP9|PRMA_SODGM Ribosomal protein L11 methyltransferase OS=Sodalis glossinidius
(strain morsitans) GN=prmA PE=3 SV=1
Length = 293
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 23/270 (8%)
Query: 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSV-DEHDNDADE---NSDEIYIDS----IFP 123
P++ ++I D S+A GA S + D HD E ++ D+ ++
Sbjct: 2 PWIQLKITTTGQQADTLSDALTESGAVSVTFQDTHDVPVYEPLPGETRLWGDTDVIGLYD 61
Query: 124 ECKDVDEC--ILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW- 180
D+ +L T +G Y+++ E +W ++ ++FHP+ + LWI P W
Sbjct: 62 AATDIATVLDVLKTHPLLGADFT--YKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWR 119
Query: 181 ---NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAH 237
+ QA N++L+PGLAFGTG H TT LCL L L G+ +D+G
Sbjct: 120 PVPDPQAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLRGKTVIDFGCG-------SGIL 172
Query: 238 QNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL 297
AAL + + + P S N + +G+ E L+ + + + +VV+ANIL
Sbjct: 173 AIAALKLGAAHAVGIDIDPQAILASRDNAQRNGVAELLTLYLPQQQPQDLHANVVVANIL 232
Query: 298 LNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
PL +LA I+ PG +G+SGIL+ Q
Sbjct: 233 AGPLRELAPLIIDLPLPGGYLGLSGILASQ 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,045,801
Number of Sequences: 539616
Number of extensions: 5030001
Number of successful extensions: 20117
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 18557
Number of HSP's gapped (non-prelim): 631
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)