Query 041970
Match_columns 327
No_of_seqs 275 out of 2074
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 12:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2264 PrmA Ribosomal protein 100.0 1.8E-59 3.8E-64 446.5 23.3 234 70-327 1-268 (300)
2 PF06325 PrmA: Ribosomal prote 100.0 3.8E-60 8.3E-65 452.4 14.1 229 72-327 1-264 (295)
3 TIGR00406 prmA ribosomal prote 100.0 8.5E-46 1.8E-50 351.9 26.6 230 73-327 1-264 (288)
4 PRK00517 prmA ribosomal protei 100.0 6.4E-41 1.4E-45 312.0 22.2 194 71-327 1-218 (250)
5 PF05175 MTS: Methyltransferas 99.4 1.7E-12 3.6E-17 114.4 12.5 110 185-321 2-139 (170)
6 PRK09489 rsmC 16S ribosomal RN 99.2 5E-11 1.1E-15 116.7 12.2 110 184-322 166-303 (342)
7 PRK15001 SAM-dependent 23S rib 99.1 4.8E-10 1E-14 111.2 12.9 114 184-322 198-340 (378)
8 PRK12335 tellurite resistance 99.1 1.1E-10 2.3E-15 111.1 7.9 138 154-320 50-221 (287)
9 COG2813 RsmC 16S RNA G1207 met 99.1 5.3E-10 1.2E-14 107.2 11.4 110 184-321 128-265 (300)
10 PF12847 Methyltransf_18: Meth 99.1 8.4E-10 1.8E-14 88.9 8.9 82 216-321 1-110 (112)
11 TIGR03533 L3_gln_methyl protei 99.0 2.6E-09 5.6E-14 101.9 13.3 119 176-320 81-249 (284)
12 PRK13944 protein-L-isoaspartat 99.0 6.9E-10 1.5E-14 100.6 8.2 107 185-321 45-172 (205)
13 PRK11805 N5-glutamine S-adenos 99.0 4.5E-09 9.8E-14 101.5 12.9 120 176-321 93-262 (307)
14 PRK15128 23S rRNA m(5)C1962 me 99.0 3.8E-09 8.2E-14 105.5 11.4 124 183-325 188-345 (396)
15 PRK14966 unknown domain/N5-glu 99.0 8.9E-09 1.9E-13 103.3 13.4 118 176-320 214-379 (423)
16 PRK15451 tRNA cmo(5)U34 methyl 98.9 7.9E-09 1.7E-13 96.2 11.1 98 202-324 42-166 (247)
17 COG2890 HemK Methylase of poly 98.9 7.1E-09 1.5E-13 99.0 10.8 94 201-320 94-236 (280)
18 PLN02781 Probable caffeoyl-CoA 98.9 1.4E-08 3.1E-13 94.3 11.0 103 203-323 56-179 (234)
19 TIGR03704 PrmC_rel_meth putati 98.9 2E-08 4.2E-13 94.3 11.4 119 176-322 46-216 (251)
20 COG1092 Predicted SAM-dependen 98.9 1.4E-08 3.1E-13 101.1 10.8 119 184-321 186-335 (393)
21 TIGR00080 pimt protein-L-isoas 98.9 1.7E-08 3.6E-13 92.0 10.4 104 189-321 48-176 (215)
22 PRK08287 cobalt-precorrin-6Y C 98.8 2.5E-08 5.5E-13 88.6 11.1 99 200-324 13-133 (187)
23 PRK00107 gidB 16S rRNA methylt 98.8 1.7E-08 3.6E-13 91.1 9.3 70 226-321 75-144 (187)
24 TIGR00537 hemK_rel_arch HemK-r 98.8 3.9E-08 8.4E-13 86.8 10.9 94 200-322 5-140 (179)
25 TIGR00536 hemK_fam HemK family 98.8 5.5E-08 1.2E-12 92.5 12.4 109 185-320 83-242 (284)
26 TIGR00477 tehB tellurite resis 98.8 1.6E-08 3.5E-13 91.0 8.3 97 198-320 11-131 (195)
27 PRK14967 putative methyltransf 98.8 3.3E-08 7.2E-13 90.5 10.2 106 186-320 8-157 (223)
28 PRK11783 rlmL 23S rRNA m(2)G24 98.8 5.9E-08 1.3E-12 103.3 12.3 116 185-322 508-656 (702)
29 TIGR02469 CbiT precorrin-6Y C5 98.8 1.2E-07 2.5E-12 77.1 11.2 87 215-324 18-124 (124)
30 PF13659 Methyltransf_26: Meth 98.7 1.1E-08 2.4E-13 83.1 5.1 74 226-320 29-113 (117)
31 TIGR00138 gidB 16S rRNA methyl 98.7 4.2E-08 9E-13 87.8 8.7 70 226-321 72-141 (181)
32 PRK11705 cyclopropane fatty ac 98.7 5.5E-08 1.2E-12 96.7 10.4 110 185-324 127-269 (383)
33 COG4123 Predicted O-methyltran 98.7 3.4E-08 7.4E-13 92.8 8.2 103 191-320 25-168 (248)
34 PTZ00098 phosphoethanolamine N 98.7 8.2E-08 1.8E-12 90.5 10.4 102 195-324 33-158 (263)
35 COG2227 UbiG 2-polyprenyl-3-me 98.7 2.5E-08 5.5E-13 93.0 6.5 86 215-325 58-164 (243)
36 PF10672 Methyltrans_SAM: S-ad 98.7 1.1E-07 2.4E-12 91.2 10.5 119 183-321 91-237 (286)
37 PRK13942 protein-L-isoaspartat 98.7 1.5E-07 3.2E-12 86.0 10.5 80 214-320 74-174 (212)
38 TIGR00740 methyltransferase, p 98.7 1.7E-07 3.7E-12 86.3 11.0 101 199-324 36-163 (239)
39 PRK01544 bifunctional N5-gluta 98.7 1.3E-07 2.9E-12 97.1 11.3 81 217-321 139-268 (506)
40 PLN02244 tocopherol O-methyltr 98.6 2.2E-07 4.7E-12 90.8 11.3 86 215-323 117-224 (340)
41 TIGR03534 RF_mod_PrmC protein- 98.6 3.6E-07 7.9E-12 83.7 12.1 96 201-321 71-216 (251)
42 PRK14968 putative methyltransf 98.6 4E-07 8.7E-12 79.6 11.5 93 203-320 12-146 (188)
43 PRK10909 rsmD 16S rRNA m(2)G96 98.6 2.9E-07 6.2E-12 83.9 10.5 102 197-321 31-158 (199)
44 PRK11207 tellurite resistance 98.6 3.5E-07 7.5E-12 82.5 10.5 83 216-323 30-136 (197)
45 PRK11873 arsM arsenite S-adeno 98.6 2.3E-07 4.9E-12 87.1 9.5 88 214-325 75-186 (272)
46 PF13847 Methyltransf_31: Meth 98.6 2.1E-07 4.5E-12 79.8 8.2 86 215-323 2-111 (152)
47 PLN02672 methionine S-methyltr 98.6 7.9E-07 1.7E-11 98.2 14.6 128 167-320 67-276 (1082)
48 PF02353 CMAS: Mycolic acid cy 98.6 1.6E-07 3.4E-12 89.5 8.0 112 187-324 23-168 (273)
49 PRK00377 cbiT cobalt-precorrin 98.6 3.5E-07 7.5E-12 82.3 9.8 88 214-323 38-146 (198)
50 PRK09328 N5-glutamine S-adenos 98.5 7.9E-07 1.7E-11 83.0 11.5 108 186-321 79-237 (275)
51 PRK11036 putative S-adenosyl-L 98.5 3.4E-07 7.5E-12 85.3 8.7 90 210-321 38-148 (255)
52 PLN02336 phosphoethanolamine N 98.5 7.3E-07 1.6E-11 90.2 11.0 100 198-324 250-371 (475)
53 TIGR02752 MenG_heptapren 2-hep 98.5 6.8E-07 1.5E-11 81.4 9.8 84 214-321 43-150 (231)
54 KOG2904 Predicted methyltransf 98.5 1.7E-06 3.6E-11 82.4 12.5 142 156-323 89-286 (328)
55 PLN02396 hexaprenyldihydroxybe 98.5 7.3E-07 1.6E-11 86.9 10.2 86 215-323 130-236 (322)
56 PLN03075 nicotianamine synthas 98.5 8.4E-07 1.8E-11 85.6 10.4 73 226-321 155-232 (296)
57 PLN02476 O-methyltransferase 98.5 7.4E-07 1.6E-11 85.2 9.8 106 201-324 104-230 (278)
58 PF01135 PCMT: Protein-L-isoas 98.5 2.3E-07 4.9E-12 85.2 5.7 89 203-320 61-170 (209)
59 COG4122 Predicted O-methyltran 98.4 1.1E-06 2.3E-11 81.5 9.8 104 201-325 45-169 (219)
60 PRK13168 rumA 23S rRNA m(5)U19 98.4 1.7E-06 3.7E-11 87.4 11.7 115 185-321 265-399 (443)
61 PRK00312 pcm protein-L-isoaspa 98.4 2.6E-06 5.5E-11 77.2 11.5 82 214-322 76-175 (212)
62 TIGR01177 conserved hypothetic 98.4 2.2E-06 4.9E-11 83.1 11.4 103 194-321 160-293 (329)
63 KOG1270 Methyltransferases [Co 98.4 4.3E-07 9.2E-12 85.9 5.9 85 216-325 89-198 (282)
64 PRK00121 trmB tRNA (guanine-N( 98.4 1.1E-06 2.4E-11 79.6 8.4 75 226-321 70-155 (202)
65 smart00828 PKS_MT Methyltransf 98.4 1.4E-06 2.9E-11 79.1 8.5 76 226-325 29-107 (224)
66 PLN02233 ubiquinone biosynthes 98.4 2.7E-06 5.9E-11 80.1 10.4 76 226-324 104-184 (261)
67 COG2518 Pcm Protein-L-isoaspar 98.3 1.3E-06 2.8E-11 80.3 7.8 87 205-320 63-167 (209)
68 PRK14103 trans-aconitate 2-met 98.3 1.4E-06 3.1E-11 81.1 8.0 84 206-321 18-125 (255)
69 PRK07402 precorrin-6B methylas 98.3 4.1E-06 8.8E-11 75.1 10.4 85 215-323 39-143 (196)
70 PRK10901 16S rRNA methyltransf 98.3 3.5E-06 7.6E-11 84.7 10.6 98 200-322 230-372 (427)
71 TIGR00095 RNA methyltransferas 98.3 3.6E-06 7.8E-11 75.9 9.6 106 196-321 26-158 (189)
72 PRK01683 trans-aconitate 2-met 98.3 2.8E-06 6.2E-11 78.8 9.2 88 205-322 19-130 (258)
73 PRK13943 protein-L-isoaspartat 98.3 4.3E-06 9.3E-11 81.6 10.3 103 189-320 54-178 (322)
74 TIGR00563 rsmB ribosomal RNA s 98.3 6.6E-06 1.4E-10 82.7 11.5 105 195-322 215-368 (426)
75 PRK04457 spermidine synthase; 98.3 3.1E-06 6.6E-11 80.0 8.6 98 200-320 51-175 (262)
76 PRK03522 rumB 23S rRNA methylu 98.3 7.3E-06 1.6E-10 79.2 11.4 114 184-322 140-274 (315)
77 TIGR02085 meth_trns_rumB 23S r 98.3 8.9E-06 1.9E-10 80.6 12.1 113 184-321 200-333 (374)
78 PRK10258 biotin biosynthesis p 98.3 3.7E-06 8E-11 77.8 8.6 80 216-324 42-142 (251)
79 TIGR02021 BchM-ChlM magnesium 98.2 9.9E-06 2.1E-10 73.6 11.0 97 199-321 38-157 (219)
80 TIGR00446 nop2p NOL1/NOP2/sun 98.2 6.7E-06 1.5E-10 77.6 9.8 85 214-322 69-199 (264)
81 PRK14902 16S rRNA methyltransf 98.2 6.5E-06 1.4E-10 83.1 10.3 98 200-322 236-379 (444)
82 COG2230 Cfa Cyclopropane fatty 98.2 1.3E-05 2.8E-10 76.9 11.6 101 199-325 53-179 (283)
83 PF01209 Ubie_methyltran: ubiE 98.2 4.1E-06 8.9E-11 78.0 8.0 84 214-321 45-152 (233)
84 PF01596 Methyltransf_3: O-met 98.2 4.4E-06 9.5E-11 76.6 8.0 104 203-324 33-157 (205)
85 PRK06922 hypothetical protein; 98.2 7.7E-06 1.7E-10 86.2 10.5 86 216-324 418-540 (677)
86 PRK14904 16S rRNA methyltransf 98.2 9.8E-06 2.1E-10 82.0 10.7 96 201-323 237-378 (445)
87 PRK00216 ubiE ubiquinone/menaq 98.2 1.1E-05 2.4E-10 72.9 9.9 75 226-323 82-159 (239)
88 PRK11727 23S rRNA mA1618 methy 98.2 4.4E-06 9.6E-11 81.5 7.7 63 217-298 115-199 (321)
89 TIGR02072 BioC biotin biosynth 98.2 1.3E-05 2.9E-10 72.1 9.8 80 217-324 35-137 (240)
90 PRK11088 rrmA 23S rRNA methylt 98.1 4.6E-06 1E-10 78.7 7.0 124 165-322 27-181 (272)
91 TIGR02716 C20_methyl_CrtF C-20 98.1 1.9E-05 4.2E-10 75.5 11.4 84 215-324 148-256 (306)
92 PF03848 TehB: Tellurite resis 98.1 1E-05 2.2E-10 73.6 8.9 82 216-323 30-134 (192)
93 PRK14901 16S rRNA methyltransf 98.1 1.5E-05 3.3E-10 80.3 10.8 100 201-322 239-384 (434)
94 PLN02490 MPBQ/MSBQ methyltrans 98.1 1.2E-05 2.7E-10 78.9 9.6 97 200-323 95-216 (340)
95 COG2242 CobL Precorrin-6B meth 98.1 2E-05 4.3E-10 71.3 9.4 86 214-324 32-137 (187)
96 PF08241 Methyltransf_11: Meth 98.1 6.3E-06 1.4E-10 63.3 5.4 68 226-320 25-95 (95)
97 PRK15068 tRNA mo(5)U34 methylt 98.1 1.6E-05 3.5E-10 77.3 9.2 86 215-324 121-228 (322)
98 PRK14903 16S rRNA methyltransf 98.1 2.1E-05 4.6E-10 79.4 10.2 96 202-322 225-366 (431)
99 PRK05134 bifunctional 3-demeth 98.1 2.5E-05 5.4E-10 71.3 9.6 100 200-323 30-152 (233)
100 PLN02589 caffeoyl-CoA O-methyl 98.0 3.5E-05 7.5E-10 72.6 10.7 101 207-324 71-192 (247)
101 TIGR00479 rumA 23S rRNA (uraci 98.0 2.9E-05 6.2E-10 78.0 10.3 115 185-321 260-395 (431)
102 PF08242 Methyltransf_12: Meth 98.0 1.5E-06 3.3E-11 68.8 0.9 71 226-318 26-99 (99)
103 PF02475 Met_10: Met-10+ like- 98.0 7.7E-06 1.7E-10 74.8 5.3 106 183-318 71-198 (200)
104 COG2226 UbiE Methylase involve 98.0 3.4E-05 7.3E-10 72.4 9.6 104 193-323 31-157 (238)
105 PF13489 Methyltransf_23: Meth 98.0 1.1E-05 2.3E-10 68.3 5.7 39 286-324 76-117 (161)
106 smart00138 MeTrc Methyltransfe 98.0 1.6E-05 3.5E-10 75.2 7.5 36 286-321 201-241 (264)
107 TIGR00091 tRNA (guanine-N(7)-) 98.0 2.4E-05 5.1E-10 70.3 8.0 75 226-321 46-131 (194)
108 PF13649 Methyltransf_25: Meth 98.0 1.7E-05 3.7E-10 63.3 6.3 66 226-316 30-101 (101)
109 PRK07580 Mg-protoporphyrin IX 98.0 7.6E-05 1.6E-09 67.6 11.2 92 201-318 47-162 (230)
110 TIGR00452 methyltransferase, p 98.0 4.7E-05 1E-09 74.1 10.2 85 215-323 120-226 (314)
111 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 5.7E-05 1.2E-09 67.5 9.8 72 226-323 70-144 (223)
112 TIGR03840 TMPT_Se_Te thiopurin 97.9 0.00013 2.7E-09 67.2 11.5 93 208-324 25-154 (213)
113 PRK08317 hypothetical protein; 97.9 0.00012 2.6E-09 65.7 11.0 83 215-322 18-124 (241)
114 PRK00811 spermidine synthase; 97.9 7E-05 1.5E-09 71.5 10.0 86 215-321 75-190 (283)
115 PF05971 Methyltransf_10: Prot 97.9 4E-05 8.6E-10 74.1 8.3 77 204-298 83-187 (299)
116 KOG2899 Predicted methyltransf 97.9 2.2E-05 4.8E-10 73.8 6.3 35 286-320 164-207 (288)
117 PHA03412 putative methyltransf 97.9 6.4E-05 1.4E-09 70.6 9.1 120 161-323 30-164 (241)
118 PF05401 NodS: Nodulation prot 97.9 8.2E-05 1.8E-09 68.0 9.2 77 218-321 45-145 (201)
119 TIGR01983 UbiG ubiquinone bios 97.8 0.0001 2.3E-09 66.5 9.5 95 206-323 29-150 (224)
120 PLN02585 magnesium protoporphy 97.8 0.00017 3.6E-09 70.3 11.3 96 198-319 125-247 (315)
121 PRK04266 fibrillarin; Provisio 97.8 0.00012 2.6E-09 68.0 9.4 85 214-321 70-175 (226)
122 PRK01581 speE spermidine synth 97.8 9.7E-05 2.1E-09 73.3 9.2 115 186-321 119-267 (374)
123 PLN02366 spermidine synthase 97.8 0.00017 3.7E-09 70.0 10.8 116 185-320 59-204 (308)
124 KOG3191 Predicted N6-DNA-methy 97.8 8.3E-05 1.8E-09 67.3 7.7 99 201-325 23-171 (209)
125 PRK13255 thiopurine S-methyltr 97.8 0.00025 5.4E-09 65.4 11.3 83 215-321 36-154 (218)
126 PRK04338 N(2),N(2)-dimethylgua 97.8 6.4E-05 1.4E-09 75.0 7.8 107 186-321 31-157 (382)
127 PF07021 MetW: Methionine bios 97.8 6.4E-05 1.4E-09 68.4 6.9 86 207-321 4-108 (193)
128 smart00650 rADc Ribosomal RNA 97.8 0.00013 2.7E-09 64.0 8.5 80 215-320 12-111 (169)
129 COG2263 Predicted RNA methylas 97.8 7.2E-05 1.6E-09 67.9 7.0 57 215-299 44-119 (198)
130 cd02440 AdoMet_MTases S-adenos 97.7 0.00025 5.5E-09 53.5 8.8 75 224-321 25-103 (107)
131 PHA03411 putative methyltransf 97.7 9.4E-05 2E-09 70.9 7.8 65 226-320 94-181 (279)
132 TIGR03587 Pse_Me-ase pseudamin 97.7 0.00023 4.9E-09 64.9 9.4 80 214-325 41-145 (204)
133 TIGR00417 speE spermidine synt 97.7 0.00013 2.9E-09 69.0 8.1 75 226-321 102-185 (270)
134 PRK06202 hypothetical protein; 97.7 0.00011 2.3E-09 67.5 7.0 61 226-313 94-159 (232)
135 PRK03612 spermidine synthase; 97.7 0.00023 5.1E-09 73.6 10.2 115 185-321 265-414 (521)
136 PLN02336 phosphoethanolamine N 97.7 0.00016 3.4E-09 73.3 8.6 82 216-321 37-141 (475)
137 PRK14121 tRNA (guanine-N(7)-)- 97.6 0.00028 6E-09 70.7 9.4 74 226-321 152-234 (390)
138 COG2519 GCD14 tRNA(1-methylade 97.6 0.00031 6.8E-09 66.3 8.7 69 226-320 125-193 (256)
139 PF03291 Pox_MCEL: mRNA cappin 97.6 0.00025 5.3E-09 69.6 8.3 91 216-321 62-185 (331)
140 KOG1271 Methyltransferases [Ge 97.6 0.00027 5.9E-09 64.2 7.8 93 205-320 50-179 (227)
141 PF01170 UPF0020: Putative RNA 97.5 0.00061 1.3E-08 60.8 9.8 74 226-322 67-151 (179)
142 COG2520 Predicted methyltransf 97.5 0.00029 6.2E-09 69.4 8.2 112 185-324 160-291 (341)
143 PRK05785 hypothetical protein; 97.5 0.00024 5.3E-09 65.6 6.9 91 193-316 29-141 (226)
144 PRK05031 tRNA (uracil-5-)-meth 97.5 0.00078 1.7E-08 66.6 10.6 120 185-321 175-319 (362)
145 COG4106 Tam Trans-aconitate me 97.5 0.00017 3.7E-09 66.9 5.1 88 203-320 16-127 (257)
146 PRK11188 rrmJ 23S rRNA methylt 97.4 0.00037 8.1E-09 63.7 7.2 36 286-321 115-164 (209)
147 PF08704 GCD14: tRNA methyltra 97.4 0.00038 8.2E-09 65.7 7.4 85 214-320 38-144 (247)
148 TIGR02143 trmA_only tRNA (urac 97.4 0.0014 3.1E-08 64.5 11.8 120 185-321 166-310 (353)
149 TIGR03438 probable methyltrans 97.4 0.00075 1.6E-08 64.9 9.4 78 226-321 94-176 (301)
150 PF03602 Cons_hypoth95: Conser 97.4 0.00047 1E-08 62.1 6.9 107 196-321 18-152 (183)
151 PF10294 Methyltransf_16: Puta 97.3 0.00083 1.8E-08 59.6 7.8 106 196-321 15-155 (173)
152 TIGR02081 metW methionine bios 97.3 0.00045 9.7E-09 61.8 6.0 32 207-238 4-54 (194)
153 PRK11933 yebU rRNA (cytosine-C 97.3 0.0017 3.7E-08 66.6 10.5 99 201-322 98-242 (470)
154 KOG1663 O-methyltransferase [S 97.2 0.0027 5.8E-08 59.4 10.1 92 216-324 73-185 (237)
155 PF05185 PRMT5: PRMT5 arginine 97.2 0.0014 3E-08 66.8 8.6 90 206-319 170-294 (448)
156 PLN02823 spermine synthase 97.1 0.0023 4.9E-08 63.0 9.1 75 226-321 133-219 (336)
157 COG4976 Predicted methyltransf 97.1 0.00021 4.6E-09 66.9 1.7 77 218-321 127-224 (287)
158 COG2265 TrmA SAM-dependent met 97.1 0.0047 1E-07 62.8 11.3 114 185-321 261-395 (432)
159 PRK13256 thiopurine S-methyltr 97.1 0.0084 1.8E-07 55.9 12.0 93 208-323 34-164 (226)
160 COG0742 N6-adenine-specific me 97.1 0.0051 1.1E-07 55.8 10.1 105 196-320 19-152 (187)
161 TIGR00308 TRM1 tRNA(guanine-26 97.0 0.0032 6.9E-08 62.8 9.4 108 187-321 16-146 (374)
162 PTZ00146 fibrillarin; Provisio 97.0 0.0025 5.4E-08 61.6 8.2 35 287-321 201-236 (293)
163 COG3897 Predicted methyltransf 97.0 0.0016 3.5E-08 59.6 6.4 78 216-322 79-178 (218)
164 PLN02232 ubiquinone biosynthes 97.0 0.0028 6.1E-08 55.3 7.6 76 226-323 3-82 (160)
165 PTZ00338 dimethyladenosine tra 97.0 0.0016 3.5E-08 62.8 6.5 61 215-300 35-113 (294)
166 KOG1975 mRNA cap methyltransfe 97.0 0.0017 3.6E-08 63.6 6.5 98 209-320 110-235 (389)
167 PF06080 DUF938: Protein of un 96.9 0.0066 1.4E-07 55.8 9.9 101 205-322 13-141 (204)
168 TIGR00438 rrmJ cell division p 96.9 0.0026 5.6E-08 56.5 6.8 39 286-324 96-148 (188)
169 COG0116 Predicted N6-adenine-s 96.9 0.0043 9.3E-08 61.9 8.7 74 225-322 259-344 (381)
170 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0019 4.2E-08 61.7 6.1 73 226-318 83-179 (311)
171 PRK11783 rlmL 23S rRNA m(2)G24 96.9 0.0046 1E-07 66.3 9.5 76 226-322 262-348 (702)
172 PF08003 Methyltransf_9: Prote 96.9 0.0025 5.3E-08 62.0 6.7 38 286-324 180-221 (315)
173 KOG1540 Ubiquinone biosynthesi 96.8 0.0055 1.2E-07 58.4 8.7 73 226-320 136-212 (296)
174 KOG4300 Predicted methyltransf 96.8 0.0054 1.2E-07 56.9 7.9 79 219-320 79-180 (252)
175 COG2384 Predicted SAM-dependen 96.8 0.009 2E-07 55.6 9.4 84 207-313 7-111 (226)
176 KOG1661 Protein-L-isoaspartate 96.7 0.0078 1.7E-07 55.8 8.6 92 204-320 70-191 (237)
177 KOG1499 Protein arginine N-met 96.7 0.0042 9E-08 61.1 6.9 81 215-319 59-164 (346)
178 COG0144 Sun tRNA and rRNA cyto 96.6 0.019 4E-07 56.9 11.1 99 201-322 143-288 (355)
179 PF00891 Methyltransf_2: O-met 96.6 0.0067 1.4E-07 55.9 7.2 98 193-324 74-201 (241)
180 PF05724 TPMT: Thiopurine S-me 96.6 0.0025 5.3E-08 59.0 4.2 96 207-323 27-156 (218)
181 PF12147 Methyltransf_20: Puta 96.5 0.027 5.8E-07 54.6 11.1 78 226-323 167-250 (311)
182 KOG3420 Predicted RNA methylas 96.5 0.0047 1E-07 54.4 5.4 67 207-298 37-124 (185)
183 PRK14896 ksgA 16S ribosomal RN 96.5 0.01 2.3E-07 55.7 8.0 58 215-300 28-103 (258)
184 KOG1541 Predicted protein carb 96.4 0.024 5.3E-07 53.1 9.8 92 200-321 34-159 (270)
185 PRK00274 ksgA 16S ribosomal RN 96.4 0.012 2.7E-07 55.7 8.1 67 214-307 40-124 (272)
186 PF01739 CheR: CheR methyltran 96.4 0.0094 2E-07 54.3 7.0 36 286-321 134-174 (196)
187 TIGR02987 met_A_Alw26 type II 96.3 0.015 3.3E-07 60.0 8.7 78 163-244 5-87 (524)
188 PF03059 NAS: Nicotianamine sy 96.2 0.012 2.5E-07 56.6 6.7 98 195-321 127-229 (276)
189 PF04816 DUF633: Family of unk 96.1 0.025 5.5E-07 51.9 8.3 73 226-321 27-100 (205)
190 TIGR00755 ksgA dimethyladenosi 96.1 0.028 6.2E-07 52.5 8.7 67 215-309 28-115 (253)
191 PRK10611 chemotaxis methyltran 96.1 0.0053 1.1E-07 59.2 3.8 35 286-320 221-260 (287)
192 COG1041 Predicted DNA modifica 96.1 0.043 9.3E-07 54.2 9.9 110 189-322 168-310 (347)
193 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.1 0.031 6.8E-07 53.1 8.7 40 287-326 157-203 (256)
194 PRK00536 speE spermidine synth 96.0 0.033 7.1E-07 53.1 8.6 68 226-320 100-169 (262)
195 PF05958 tRNA_U5-meth_tr: tRNA 95.9 0.041 8.9E-07 54.3 9.3 67 184-253 164-249 (352)
196 KOG2361 Predicted methyltransf 95.8 0.017 3.7E-07 54.5 5.7 75 226-321 103-182 (264)
197 COG3129 Predicted SAM-dependen 95.8 0.019 4.1E-07 54.1 5.7 66 217-301 79-166 (292)
198 PF01564 Spermine_synth: Sperm 95.6 0.037 8.1E-07 52.0 7.1 115 187-322 46-191 (246)
199 KOG1500 Protein arginine N-met 95.5 0.034 7.5E-07 55.0 6.8 79 216-319 177-279 (517)
200 PF06962 rRNA_methylase: Putat 95.5 0.042 9E-07 47.8 6.4 75 226-321 5-91 (140)
201 COG1352 CheR Methylase of chem 94.9 0.093 2E-06 50.2 7.6 35 286-320 200-239 (268)
202 KOG2187 tRNA uracil-5-methyltr 94.8 0.18 3.8E-06 52.2 9.7 67 185-254 351-437 (534)
203 PF09445 Methyltransf_15: RNA 94.5 0.026 5.5E-07 50.3 2.5 31 226-259 27-57 (163)
204 COG0421 SpeE Spermidine syntha 94.4 0.089 1.9E-06 50.7 6.1 95 196-321 84-189 (282)
205 COG2521 Predicted archaeal met 94.3 0.019 4.1E-07 54.2 1.3 87 214-320 132-243 (287)
206 PF08123 DOT1: Histone methyla 94.3 0.33 7.2E-06 44.6 9.4 88 214-320 40-156 (205)
207 PF02390 Methyltransf_4: Putat 94.3 0.081 1.8E-06 48.0 5.3 103 186-321 19-132 (195)
208 KOG2915 tRNA(1-methyladenosine 94.2 0.28 6.2E-06 47.3 9.0 94 203-321 94-208 (314)
209 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.8 0.28 6.1E-06 47.0 8.3 96 202-321 73-218 (283)
210 PF02527 GidB: rRNA small subu 93.7 0.18 4E-06 45.5 6.5 69 226-320 78-146 (184)
211 PF05219 DREV: DREV methyltran 93.7 0.21 4.6E-06 47.7 7.0 38 286-324 149-190 (265)
212 PF11968 DUF3321: Putative met 93.6 0.055 1.2E-06 50.3 2.9 33 285-317 101-139 (219)
213 PF02005 TRM: N2,N2-dimethylgu 93.1 0.33 7.2E-06 48.6 7.7 74 226-321 80-153 (377)
214 COG4262 Predicted spermidine s 91.9 0.54 1.2E-05 47.2 7.3 114 183-320 255-405 (508)
215 TIGR00478 tly hemolysin TlyA f 91.7 0.16 3.5E-06 47.4 3.4 27 288-320 143-169 (228)
216 PF04672 Methyltransf_19: S-ad 91.6 0.54 1.2E-05 45.1 6.8 96 218-325 70-193 (267)
217 COG4076 Predicted RNA methylas 91.1 0.27 5.8E-06 45.3 4.1 92 200-319 18-132 (252)
218 KOG2912 Predicted DNA methylas 90.8 0.22 4.9E-06 49.0 3.4 28 226-254 132-159 (419)
219 PF07091 FmrO: Ribosomal RNA m 90.6 0.3 6.4E-06 46.4 4.0 53 199-252 81-160 (251)
220 TIGR03439 methyl_EasF probable 90.6 2.6 5.5E-05 41.4 10.6 106 195-320 83-195 (319)
221 PRK00050 16S rRNA m(4)C1402 me 90.5 0.5 1.1E-05 45.9 5.5 52 187-253 22-73 (296)
222 COG0293 FtsJ 23S rRNA methylas 90.3 0.84 1.8E-05 42.2 6.6 37 286-322 109-159 (205)
223 PRK04148 hypothetical protein; 89.9 0.54 1.2E-05 40.6 4.7 32 208-239 6-58 (134)
224 PF01861 DUF43: Protein of unk 89.7 4 8.7E-05 38.7 10.6 93 201-316 28-142 (243)
225 COG0220 Predicted S-adenosylme 89.3 1.4 3E-05 41.2 7.3 103 186-321 50-163 (227)
226 COG0030 KsgA Dimethyladenosine 89.3 1.1 2.5E-05 42.7 6.9 49 226-301 58-108 (259)
227 PF05891 Methyltransf_PK: AdoM 89.1 0.57 1.2E-05 43.6 4.5 94 203-321 35-160 (218)
228 KOG3010 Methyltransferase [Gen 88.3 0.87 1.9E-05 43.3 5.2 87 201-320 46-135 (261)
229 PF06859 Bin3: Bicoid-interact 88.3 0.48 1E-05 39.6 3.1 33 288-320 1-42 (110)
230 TIGR01444 fkbM_fam methyltrans 87.8 0.54 1.2E-05 39.2 3.3 21 226-246 28-48 (143)
231 PF13578 Methyltransf_24: Meth 87.6 0.91 2E-05 36.1 4.3 94 201-321 9-104 (106)
232 PF03141 Methyltransf_29: Puta 86.7 0.66 1.4E-05 48.0 3.7 39 285-323 178-220 (506)
233 KOG2671 Putative RNA methylase 86.1 1.6 3.4E-05 43.6 5.8 87 213-320 205-352 (421)
234 KOG2730 Methylase [General fun 84.8 0.44 9.5E-06 44.8 1.2 32 226-260 122-153 (263)
235 COG1189 Predicted rRNA methyla 84.5 8.5 0.00018 36.5 9.6 35 286-320 142-176 (245)
236 KOG1269 SAM-dependent methyltr 84.0 2.4 5.2E-05 42.4 6.2 90 209-321 103-214 (364)
237 KOG2940 Predicted methyltransf 83.9 0.58 1.3E-05 44.4 1.6 81 215-321 71-173 (325)
238 PRK01544 bifunctional N5-gluta 83.9 3.3 7.2E-05 43.0 7.3 83 217-321 348-461 (506)
239 COG0357 GidB Predicted S-adeno 82.6 4 8.6E-05 38.0 6.6 29 289-318 136-164 (215)
240 PRK15001 SAM-dependent 23S rib 82.1 5.7 0.00012 39.9 8.0 68 229-322 73-142 (378)
241 KOG1122 tRNA and rRNA cytosine 81.7 6.4 0.00014 40.2 8.1 87 214-322 239-371 (460)
242 PF00398 RrnaAD: Ribosomal RNA 80.1 6.6 0.00014 36.9 7.3 62 226-310 58-119 (262)
243 COG0500 SmtA SAM-dependent met 78.4 23 0.00049 26.7 8.7 38 287-324 118-157 (257)
244 KOG3201 Uncharacterized conser 78.2 2.6 5.6E-05 38.1 3.6 100 200-321 15-139 (201)
245 COG1867 TRM1 N2,N2-dimethylgua 77.3 5.9 0.00013 39.8 6.2 108 185-321 26-153 (380)
246 PRK11524 putative methyltransf 76.1 3.4 7.3E-05 39.4 4.1 36 286-321 25-79 (284)
247 PF09243 Rsm22: Mitochondrial 73.4 21 0.00046 33.9 8.8 43 199-241 14-79 (274)
248 PRK11760 putative 23S rRNA C24 73.3 11 0.00024 37.7 7.0 28 286-314 268-295 (357)
249 PF01269 Fibrillarin: Fibrilla 72.0 24 0.00052 33.2 8.5 36 286-321 141-177 (229)
250 PF10237 N6-adenineMlase: Prob 70.7 13 0.00028 33.1 6.2 36 286-321 84-122 (162)
251 PF08029 HisG_C: HisG, C-termi 70.7 8.4 0.00018 29.9 4.4 41 60-104 31-71 (75)
252 KOG1562 Spermidine synthase [A 70.5 23 0.00049 34.9 8.2 77 226-322 151-236 (337)
253 KOG0820 Ribosomal RNA adenine 70.3 7.7 0.00017 37.7 4.9 75 183-298 59-133 (315)
254 COG0286 HsdM Type I restrictio 69.2 17 0.00036 37.7 7.6 140 156-325 156-332 (489)
255 TIGR03455 HisG_C-term ATP phos 68.1 11 0.00025 30.7 4.9 41 60-104 55-95 (100)
256 KOG4589 Cell division protein 67.1 5.6 0.00012 36.8 3.1 37 285-321 133-183 (232)
257 PHA01634 hypothetical protein 65.7 6.7 0.00015 34.2 3.2 31 216-246 28-77 (156)
258 KOG3045 Predicted RNA methylas 63.1 10 0.00022 36.7 4.2 48 277-324 216-266 (325)
259 KOG1709 Guanidinoacetate methy 62.8 55 0.0012 31.1 8.8 82 215-319 100-203 (271)
260 PF01555 N6_N4_Mtase: DNA meth 61.8 11 0.00024 33.1 4.1 42 197-238 169-231 (231)
261 KOG2352 Predicted spermine/spe 61.7 36 0.00077 35.4 8.1 70 226-321 77-160 (482)
262 PF07942 N2227: N2227-like pro 60.1 11 0.00024 36.3 3.9 37 286-322 163-202 (270)
263 KOG1253 tRNA methyltransferase 59.3 11 0.00024 39.2 4.0 75 226-320 140-214 (525)
264 COG3963 Phospholipid N-methylt 54.1 39 0.00085 30.8 6.1 35 286-320 115-154 (194)
265 PF05148 Methyltransf_8: Hypot 53.1 14 0.00031 34.4 3.3 48 277-324 110-160 (219)
266 COG1064 AdhP Zn-dependent alco 52.6 13 0.00029 36.9 3.2 34 288-325 229-262 (339)
267 COG0275 Predicted S-adenosylme 52.6 16 0.00034 35.9 3.6 54 186-253 25-78 (314)
268 PRK11524 putative methyltransf 52.1 27 0.00058 33.2 5.1 43 198-241 187-251 (284)
269 PF13679 Methyltransf_32: Meth 50.5 28 0.00061 29.4 4.5 19 226-244 59-77 (141)
270 PF07090 DUF1355: Protein of u 49.6 21 0.00046 32.2 3.7 36 287-322 66-108 (177)
271 PF01728 FtsJ: FtsJ-like methy 48.6 22 0.00048 30.9 3.7 35 287-321 90-138 (181)
272 PF11599 AviRa: RRNA methyltra 47.9 25 0.00054 33.2 4.0 40 203-242 33-99 (246)
273 KOG3178 Hydroxyindole-O-methyl 46.5 1.5E+02 0.0032 29.7 9.3 75 218-323 179-276 (342)
274 TIGR00006 S-adenosyl-methyltra 44.1 74 0.0016 31.2 6.8 52 187-253 23-74 (305)
275 PRK11613 folP dihydropteroate 40.8 31 0.00067 33.4 3.6 40 186-225 20-59 (282)
276 KOG2798 Putative trehalase [Ca 40.4 38 0.00083 33.7 4.2 38 286-323 257-297 (369)
277 TIGR01496 DHPS dihydropteroate 39.2 35 0.00077 32.2 3.7 40 186-225 5-44 (257)
278 PF01795 Methyltransf_5: MraW 39.2 11 0.00023 37.1 0.2 52 187-253 23-74 (310)
279 PF03141 Methyltransf_29: Puta 37.6 26 0.00057 36.6 2.7 36 286-321 425-466 (506)
280 PLN02245 ATP phosphoribosyl tr 36.4 63 0.0014 32.9 5.2 45 60-104 335-382 (403)
281 cd08237 ribitol-5-phosphate_DH 36.0 1.1E+02 0.0025 29.3 6.8 37 288-324 222-258 (341)
282 PRK10742 putative methyltransf 35.8 1E+02 0.0022 29.5 6.1 44 195-243 70-133 (250)
283 PF04989 CmcI: Cephalosporin h 35.1 1E+02 0.0023 28.5 6.0 34 287-321 110-146 (206)
284 cd00739 DHPS DHPS subgroup of 33.8 46 0.001 31.5 3.6 39 187-225 7-45 (257)
285 PF11582 DUF3240: Protein of u 33.8 55 0.0012 26.7 3.6 64 75-139 6-83 (102)
286 KOG1099 SAM-dependent methyltr 32.0 65 0.0014 30.9 4.1 34 286-319 113-160 (294)
287 PLN03014 carbonic anhydrase 32.0 44 0.00096 33.3 3.2 27 30-56 18-45 (347)
288 cd03713 EFG_mtEFG_C EFG_mtEFG_ 30.7 1.6E+02 0.0035 21.9 5.6 47 72-125 2-48 (78)
289 KOG2078 tRNA modification enzy 30.7 37 0.0008 35.0 2.4 58 195-253 227-304 (495)
290 cd01514 Elongation_Factor_C El 30.3 1.9E+02 0.004 21.6 5.8 48 72-125 2-49 (79)
291 PF08351 DUF1726: Domain of un 30.2 58 0.0013 26.1 3.1 35 286-320 9-43 (92)
292 COG4798 Predicted methyltransf 29.9 46 0.001 31.1 2.7 31 290-320 134-164 (238)
293 cd03143 A4_beta-galactosidase_ 29.2 45 0.00098 28.3 2.5 35 287-321 52-86 (154)
294 PF15519 RBM39linker: linker b 29.0 25 0.00054 27.2 0.7 58 15-73 13-73 (73)
295 cd03710 BipA_TypA_C BipA_TypA_ 28.8 2.1E+02 0.0045 21.6 5.9 48 72-125 2-49 (79)
296 cd04097 mtEFG1_C mtEFG1_C: C-t 28.7 1.7E+02 0.0038 21.9 5.4 47 72-125 2-48 (78)
297 PRK13753 dihydropteroate synth 28.6 70 0.0015 30.9 3.9 39 187-225 8-46 (279)
298 KOG4058 Uncharacterized conser 28.4 3.8E+02 0.0082 24.2 8.0 77 218-319 74-169 (199)
299 PF05711 TylF: Macrocin-O-meth 26.3 1.2E+02 0.0025 28.9 4.9 70 231-322 140-212 (248)
300 cd03711 Tet_C Tet_C: C-terminu 26.1 1.7E+02 0.0038 21.9 5.0 48 72-126 2-49 (78)
301 TIGR01202 bchC 2-desacetyl-2-h 25.6 3.1E+02 0.0068 25.8 7.8 35 287-324 199-233 (308)
302 PRK00489 hisG ATP phosphoribos 25.6 1.2E+02 0.0026 28.8 4.9 34 71-104 248-281 (287)
303 PRK13699 putative methylase; P 25.1 1.4E+02 0.003 27.6 5.1 45 199-243 143-208 (227)
304 PF08468 MTS_N: Methyltransfer 24.0 1.4E+02 0.003 26.2 4.6 37 286-322 67-105 (155)
305 cd00401 AdoHcyase S-adenosyl-L 23.4 2.1E+02 0.0045 29.3 6.3 35 288-324 257-291 (413)
306 cd00423 Pterin_binding Pterin 22.9 73 0.0016 29.9 2.8 39 187-225 7-45 (258)
307 cd04096 eEF2_snRNP_like_C eEF2 22.8 2.5E+02 0.0053 21.1 5.3 49 72-125 2-50 (80)
308 TIGR00936 ahcY adenosylhomocys 22.7 1.9E+02 0.0041 29.5 5.9 34 288-324 250-284 (406)
309 COG2813 RsmC 16S RNA G1207 met 22.4 2.3E+02 0.005 27.8 6.2 36 287-322 36-73 (300)
310 PF00402 Calponin: Calponin fa 22.3 41 0.00089 21.1 0.7 10 191-200 14-24 (26)
311 PF00679 EFG_C: Elongation fac 21.9 2.3E+02 0.0049 21.9 5.1 49 72-126 5-53 (89)
312 TIGR00497 hsdM type I restrict 21.7 2.3E+02 0.005 29.3 6.4 23 226-248 251-273 (501)
313 PF07669 Eco57I: Eco57I restri 21.5 1.3E+02 0.0029 24.2 3.7 11 288-298 2-12 (106)
314 TIGR00027 mthyl_TIGR00027 meth 21.4 6.9E+02 0.015 23.5 9.6 111 197-321 61-196 (260)
315 cd03709 lepA_C lepA_C: This fa 21.4 3E+02 0.0064 20.9 5.5 48 72-125 2-49 (80)
316 PRK13753 dihydropteroate synth 21.1 1.3E+02 0.0027 29.2 4.0 29 186-214 169-198 (279)
317 smart00838 EFG_C Elongation fa 21.1 3E+02 0.0064 20.9 5.5 47 72-125 4-50 (85)
318 PRK01747 mnmC bifunctional tRN 21.0 4.3E+02 0.0093 28.2 8.4 34 287-320 165-204 (662)
319 PRK09489 rsmC 16S ribosomal RN 20.6 1.6E+02 0.0035 29.0 4.8 37 287-323 75-113 (342)
320 PF07799 DUF1643: Protein of u 20.3 2.2E+02 0.0047 23.8 4.9 51 185-235 16-67 (136)
321 PRK11613 folP dihydropteroate 20.1 1.3E+02 0.0029 29.0 4.0 27 186-213 181-207 (282)
No 1
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-59 Score=446.49 Aligned_cols=234 Identities=32% Similarity=0.511 Sum_probs=197.1
Q ss_pred CCCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCC--CC-------CCCCCCcEEEEEEcCCCCCHHHHHHhhhhhcC
Q 041970 70 ESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHD--ND-------ADENSDEIYIDSIFPECKDVDECILNTANSIG 140 (327)
Q Consensus 70 ~m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~--~~-------~~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~ 140 (327)
+|+|+|++|.|+++++|.++++|.+.|+.||.++|.. .+ ....|+.+.+.+||+.+.+.+..++.+.+.+.
T Consensus 1 ~m~w~el~i~~~~~~aE~~~~~l~e~G~~~v~~eD~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (300)
T COG2264 1 MMPWIELSLITTGEAAERVSDALEEAGAVGVAIEDAKLDTPSFEPVFGEPRLWDGVKVKALFPADTDLALLLAELEALLA 80 (300)
T ss_pred CCceEEEEEEeCHHHHHHHHHHHHhcCcceeeeecccccCcccccccCCCcccccceeEeeecccchHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999883 11 11236788999999999988888887766543
Q ss_pred C-CCCCcceeeeccchhhHHHHhhcCceEEEcCcEEEEcCCC----C-CceeEEEccCcccCCCchhhHHHHHHHHHhhh
Q 041970 141 L-KEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN----V-QATNIILNPGLAFGTGEHATTKLCLLLLRSLI 214 (327)
Q Consensus 141 l-~~~~~~~~~~~ee~DW~~~Wk~~f~P~~vg~~l~I~P~W~----~-~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~ 214 (327)
. ...-.+.....+|+||.++||+||+|+++|++|+|+|+|. + ++++|+||||||||||+||||+|||++|++++
T Consensus 81 ~~~~~~~~~~~~~~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~ 160 (300)
T COG2264 81 LLELFAHVIEQEEDEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLL 160 (300)
T ss_pred ccccccceeEeecChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhh
Confidence 2 2111234455668899999999999999999999999998 2 36789999999999999999999999999999
Q ss_pred cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
++|++|||+|| +||||.||++|++|+++|++.. .+.+. ..+. .
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~--~~~~---------~------ 222 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAK--GFLL---------L------ 222 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcc--cccc---------h------
Confidence 99999999999 9999999999999999999973 22221 1111 0
Q ss_pred ccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970 276 SSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q 327 (327)
.....++||+|||||+|+++..|+|++.+++||||++|+||||.+|
T Consensus 223 ------~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q 268 (300)
T COG2264 223 ------EVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQ 268 (300)
T ss_pred ------hhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence 1112469999999999999999999999999999999999999886
No 2
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=100.00 E-value=3.8e-60 Score=452.42 Aligned_cols=229 Identities=34% Similarity=0.582 Sum_probs=128.9
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCC---C-CC-------CCCCCcEEEEEEcCCCCCHHHHHHhhhhhcC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHD---N-DA-------DENSDEIYIDSIFPECKDVDECILNTANSIG 140 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~---~-~~-------~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~ 140 (327)
+|+||+|.|+++++|+++++|.++|+.||.++|.. . +. ...++.+.|++||+.+.+.++.++.+++...
T Consensus 1 ~W~ei~i~~~~e~~e~vs~~L~~~G~~gv~~ed~~~~~~~~~~e~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~l~~~~~ 80 (295)
T PF06325_consen 1 KWLEISITTPSEAEEAVSDILMELGANGVEIEDPDLLDEEPIFEPDPDEEPLWDEVRVKAYFPEDEDIEELLAALRELLE 80 (295)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccccccccccccccchHhhcCCCEEEEEeccccccCcccccCCCCcccccCceEEEEeCCCcChHHHHHHHHHHhh
Confidence 59999999999999999999999999999998876 1 00 0114567899999998888877777665432
Q ss_pred CCCCCcceeeeccchhhHHHHhhcCceEEEcCcEEEEcCCC-----CCceeEEEccCcccCCCchhhHHHHHHHHHhhhc
Q 041970 141 LKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN-----VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIK 215 (327)
Q Consensus 141 l~~~~~~~~~~~ee~DW~~~Wk~~f~P~~vg~~l~I~P~W~-----~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~ 215 (327)
......+.++..+++||+++||+||+|++||++|+|+|+|+ ++.++|+||||||||||+||||+|||++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~ 160 (295)
T PF06325_consen 81 NLGEIEIEIEEIEEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVK 160 (295)
T ss_dssp -------EEEE--HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSS
T ss_pred ccCCCceEEEEeccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhcc
Confidence 11123567788899999999999999999999999999998 2457899999999999999999999999999999
Q ss_pred CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
+|++|||+|| +||||.||+.|++|+++||+. +++.+.. ..+
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v~~-~~~------------------ 220 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-DRIEVSL-SED------------------ 220 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEESC-TSC------------------
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEEEE-ecc------------------
Confidence 9999999999 999999999999999999998 4776521 111
Q ss_pred cccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q 327 (327)
. ..++||+|+|||++++|..|+|++.++|+|||+||+|||+.+|
T Consensus 221 ------~-~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~ 264 (295)
T PF06325_consen 221 ------L-VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQ 264 (295)
T ss_dssp ------T-CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG
T ss_pred ------c-ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHH
Confidence 1 1479999999999999999999999999999999999999876
No 3
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=100.00 E-value=8.5e-46 Score=351.93 Aligned_cols=230 Identities=29% Similarity=0.401 Sum_probs=181.6
Q ss_pred cEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCC----CCCCCCcEEEEEEcCCCCCHHHH--HH---hhhhhcCCCC
Q 041970 73 YLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDND----ADENSDEIYIDSIFPECKDVDEC--IL---NTANSIGLKE 143 (327)
Q Consensus 73 w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~----~~~~~~~~~v~ayfp~~~~~~~~--l~---~~~~~~~l~~ 143 (327)
|+||+|.|+++++|+++++|.++|+.||+++|.... .+.+.+...+++|++.+...++. +. ...+.+++..
T Consensus 1 w~~~~~~~~~~~~e~~~~~l~~~g~~gv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (288)
T TIGR00406 1 WIEIRINTTKELAEATSDALEEAGAVGVTFEDDKDTIYFEPHLPGEKRLWGNLDVIALFDAETDMNNSVIPLLEAFCLDL 80 (288)
T ss_pred CEEEEEEeCHHHHHHHHHHHHhcCCCEEEEEcCCCCceecCCCCCCccEEEEEEeeccCcccchHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999986421 11222456788888755432211 11 1111222211
Q ss_pred CC-cceeeeccchhhHHHHhhcCceEEEcCcEEEEcCCCC-----CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCC
Q 041970 144 IP-RYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV-----QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGG 217 (327)
Q Consensus 144 ~~-~~~~~~~ee~DW~~~Wk~~f~P~~vg~~l~I~P~W~~-----~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g 217 (327)
.. .......+++||+++||+||+|+++|++|+|+|+|+. +...|.||||||||||+||||++|+++|+++.++|
T Consensus 81 ~~~~~~~~~~~~~dW~~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g 160 (288)
T TIGR00406 81 GRNHKIEFDEFSKDWERAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKD 160 (288)
T ss_pred CcceeEEeecchhhHHHHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCC
Confidence 11 1223334468999999999999999999999999972 35789999999999999999999999999999999
Q ss_pred Ceeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccc
Q 041970 218 ELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSH 278 (327)
Q Consensus 218 ~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~ 278 (327)
++|||+|| +|+|+.|++.|++|++.|++. +++.+.. ++..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~--~~~~------------------ 219 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKL--IYLE------------------ 219 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEe--cccc------------------
Confidence 99999999 999999999999999999987 4555432 2210
Q ss_pred cccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970 279 KIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327 (327)
Q Consensus 279 ~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q 327 (327)
.. ..++||+|+||++++.+..+++.+.+.|||||++++|||+.+|
T Consensus 220 ---~~-~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 220 ---QP-IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred ---cc-cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 01 1468999999999999999999999999999999999998764
No 4
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=100.00 E-value=6.4e-41 Score=312.02 Aligned_cols=194 Identities=39% Similarity=0.683 Sum_probs=165.2
Q ss_pred CCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCCCCHHHHHHhhhhhcCCC-CCCccee
Q 041970 71 SPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLK-EIPRYEV 149 (327)
Q Consensus 71 m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~l~-~~~~~~~ 149 (327)
|+|+|++|.|+++++|++++.|.++|+. +.++.+.+ ++.. ....+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------------------------------~~~~~~~~-~~~~~~~~~~~~ 48 (250)
T PRK00517 1 MKWIELTLNTTPEAAEALSDILMELGAL-------------------------------AALANLAG-LGLDLGEPTYTI 48 (250)
T ss_pred CceEEEEEEeChhhHHHHHHHHHHcChH-------------------------------HHHHHhhh-cCCCCCCCceEE
Confidence 7899999999999999999999999874 22322221 1111 1235677
Q ss_pred eeccchhhHHHHhhcCceEEEcCcEEEEcCCC----CCceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee
Q 041970 150 KMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN----VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT 225 (327)
Q Consensus 150 ~~~ee~DW~~~Wk~~f~P~~vg~~l~I~P~W~----~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc 225 (327)
+..+++||+++||++|+|+++|++++|+|+|+ ++...|.||||||||||+||||++|+++|+++..++++|||+||
T Consensus 49 ~~~~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGc 128 (250)
T PRK00517 49 EEVEDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGC 128 (250)
T ss_pred EEcCchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCC
Confidence 88889999999999999999999999999998 24577999999999999999999999999999889999999999
Q ss_pred -------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCC
Q 041970 226 -------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISET 286 (327)
Q Consensus 226 -------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~ 286 (327)
+|+||.+++.|++|++.|++. +++.+. . .+
T Consensus 129 GsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~--~----------------------------~~ 177 (250)
T PRK00517 129 GSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-LNVYLP--Q----------------------------GD 177 (250)
T ss_pred cHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEc--c----------------------------CC
Confidence 999999999999999999985 344431 0 02
Q ss_pred CCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970 287 EEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327 (327)
Q Consensus 287 ~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q 327 (327)
.+||+|+||+.++++..+++.+.++|||||++++|||+.++
T Consensus 178 ~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~ 218 (250)
T PRK00517 178 LKADVIVANILANPLLELAPDLARLLKPGGRLILSGILEEQ 218 (250)
T ss_pred CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhh
Confidence 37999999999999999999999999999999999998653
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.43 E-value=1.7e-12 Score=114.40 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=87.7
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg 244 (327)
+.+...||+.=..+..+.|++.++.+... ++++|||+|| +|+++.|++.|++|++.|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~ 79 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG 79 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence 45788999954466789999999999987 6789999999 9999999999999999999
Q ss_pred CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCCCc
Q 041970 245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKPGA 316 (327)
Q Consensus 245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~LkpGG 316 (327)
++ + +++. ..|.+ + .+ ..++||+|++|++. ..+.+++....++|+|||
T Consensus 80 ~~-~-v~~~--~~d~~--------~------------~~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 80 LE-N-VEVV--QSDLF--------E------------AL-PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp CT-T-EEEE--ESSTT--------T------------TC-CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred cc-c-cccc--ccccc--------c------------cc-cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence 97 3 6664 45553 0 12 25789999999864 367889999999999999
Q ss_pred EEEEe
Q 041970 317 VVGIS 321 (327)
Q Consensus 317 ~LIlS 321 (327)
.|++-
T Consensus 135 ~l~lv 139 (170)
T PF05175_consen 135 RLFLV 139 (170)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99764
No 6
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.25 E-value=5e-11 Score=116.69 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=88.8
Q ss_pred ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970 184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN 243 (327)
...+...||+.+.++.++.|+++++.|... ...+|||+|| +|+++.|++.|++|++.|
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n 243 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN 243 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 457889999999999999999999998754 2348999999 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCCC
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKPG 315 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~LkpG 315 (327)
++.. ++. .+|.. ... .++||+|++|+.. .....++..+.++||||
T Consensus 244 ~l~~---~~~--~~D~~--------------------~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 244 GLEG---EVF--ASNVF--------------------SDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred CCCC---EEE--Ecccc--------------------ccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcC
Confidence 9862 332 34432 011 4689999999864 34678899999999999
Q ss_pred cEEEEee
Q 041970 316 AVVGISG 322 (327)
Q Consensus 316 G~LIlSG 322 (327)
|.|++.+
T Consensus 297 G~L~iVa 303 (342)
T PRK09489 297 GELRIVA 303 (342)
T ss_pred CEEEEEE
Confidence 9998754
No 7
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.13 E-value=4.8e-10 Score=111.20 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=89.4
Q ss_pred ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970 184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN 243 (327)
...+.-.||+.=+.+...-|++.|+.|... .+.+|||+|| +|+++.|++.|++|++.|
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n 275 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN 275 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 355777899988888899999999988643 2459999999 999999999999999999
Q ss_pred CCCC-CcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCC
Q 041970 244 NIGP-KKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKP 314 (327)
Q Consensus 244 gv~~-~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~Lkp 314 (327)
+.+. .++++. .+|.+ . .. ...+||+|++|+.. +...+++.++.++|+|
T Consensus 276 ~~~~~~~v~~~--~~D~l--------~------------~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp 332 (378)
T PRK15001 276 MPEALDRCEFM--INNAL--------S------------GV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI 332 (378)
T ss_pred CcccCceEEEE--Ecccc--------c------------cC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc
Confidence 8641 255654 34542 0 11 13579999999764 3456889999999999
Q ss_pred CcEEEEee
Q 041970 315 GAVVGISG 322 (327)
Q Consensus 315 GG~LIlSG 322 (327)
||.|++.+
T Consensus 333 GG~L~iV~ 340 (378)
T PRK15001 333 NGELYIVA 340 (378)
T ss_pred CCEEEEEE
Confidence 99999875
No 8
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.13 E-value=1.1e-10 Score=111.08 Aligned_cols=138 Identities=19% Similarity=0.259 Sum_probs=102.5
Q ss_pred chhhHHHHhhcCceEEEcCcEEEEcCCC-----CC----ceeEEEccCcccCCCc--hhhHHHHHHHHHhhhcCCCeeee
Q 041970 154 QCNWIKKAQESFHPVEVTKGLWIVPEWN-----VQ----ATNIILNPGLAFGTGE--HATTKLCLLLLRSLIKGGELFLD 222 (327)
Q Consensus 154 e~DW~~~Wk~~f~P~~vg~~l~I~P~W~-----~~----~~~I~idPG~AFGTG~--H~TT~lcLe~Le~~~~~g~~VLD 222 (327)
+++|...|++.|.|...+ +++.-+.|+ .+ .+.++.+|+..|+... +++.+.++..+.. .+ +.+|||
T Consensus 50 de~g~~~~~~~l~~~~~~-~~i~p~~wh~v~~~s~d~~~~l~fy~~~~~~f~~~~~~~~~~~~~~~~~~~-~~-~~~vLD 126 (287)
T PRK12335 50 TEDGEELSEHIFDAENQP-PFIEPQAWHRIEAASDDLECQLSFYCKPEDYFHKKYNLTATHSEVLEAVQT-VK-PGKALD 126 (287)
T ss_pred CCCCCeeeEEEEecCCCC-ceeCCcceEEEEEcCCCcEEEEEEEEcchhhHhhhhccccccHHHHHHhhc-cC-CCCEEE
Confidence 348999999999997654 354455887 12 2458899999998876 5778888877753 34 459999
Q ss_pred eee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCC
Q 041970 223 YGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGIS 284 (327)
Q Consensus 223 vGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~ 284 (327)
+|| +|+++.|++.+++|++.+++. +++. ..|.. . ..+
T Consensus 127 lGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~---v~~~--~~D~~---------~----------~~~- 181 (287)
T PRK12335 127 LGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLN---IRTG--LYDIN---------S----------ASI- 181 (287)
T ss_pred eCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc---eEEE--Eechh---------c----------ccc-
Confidence 999 999999999999999999873 4443 23321 0 011
Q ss_pred CCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEE
Q 041970 285 ETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 285 ~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIl 320 (327)
.++||+|+++... +-+..++..+.++|+|||++++
T Consensus 182 -~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 -QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred -cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5689999999643 3456788999999999999655
No 9
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.3e-10 Score=107.25 Aligned_cols=110 Identities=21% Similarity=0.313 Sum_probs=86.5
Q ss_pred ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970 184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN 243 (327)
+..+.=+|||.-..+-.--|++.|+-|.... +.+|||+|| +|+|..||+.||+|++.|
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~--~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDL--GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCccC--CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 3557778999877778888999999988553 339999999 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCCC
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKPG 315 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~LkpG 315 (327)
+++. . .+. .+|.+ ..+ .++||+|++|++. +.-.+|+....++|++|
T Consensus 206 ~~~~-~-~v~--~s~~~--------------------~~v--~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 206 GVEN-T-EVW--ASNLY--------------------EPV--EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred CCCc-c-EEE--Eeccc--------------------ccc--cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 9973 2 232 34542 112 3499999999874 33458999999999999
Q ss_pred cEEEEe
Q 041970 316 AVVGIS 321 (327)
Q Consensus 316 G~LIlS 321 (327)
|.|.+-
T Consensus 260 GeL~iV 265 (300)
T COG2813 260 GELWIV 265 (300)
T ss_pred CEEEEE
Confidence 988764
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.06 E-value=8.4e-10 Score=88.85 Aligned_cols=82 Identities=28% Similarity=0.446 Sum_probs=63.7
Q ss_pred CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC-CCCCccccccchhhh
Q 041970 216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT-FPSSMNERVDGIVEY 274 (327)
Q Consensus 216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~-~~~~~~g~~~~l~~~ 274 (327)
||.+|||+|| +|++|.+++.|++|++.++.. +++++. .+|. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~--~~d~~~-------------- 63 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFV--QGDAEF-------------- 63 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEE--ESCCHG--------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEE--ECcccc--------------
Confidence 5778999999 999999999999999888876 678875 3443 1
Q ss_pred cccccccCCCCCCCeeEEEEcC-----Ch--HHHHHHHHHHhhccCCCcEEEEe
Q 041970 275 LSSHKIRGISETEEYDVVIANI-----LL--NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 275 ~~~~~~~~~~~~~~fDlVvANI-----la--~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.....++||+|+++. +. +...+++..+.+.|+|||+|+++
T Consensus 64 -------~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 64 -------DPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp -------GTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 011256799999988 22 23456788999999999999975
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.05 E-value=2.6e-09 Score=101.93 Aligned_cols=119 Identities=14% Similarity=0.206 Sum_probs=86.3
Q ss_pred EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee--------------------ecCCHHHH
Q 041970 176 IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT--------------------VDIDPQVI 233 (327)
Q Consensus 176 I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc--------------------VDIDp~AV 233 (327)
|...+.-....+.++||+-+ =..+|..++...+.+.+ .++.+|||+|| +|+++.|+
T Consensus 81 i~g~~~f~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al 158 (284)
T TIGR03533 81 LTNEAWFAGLEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL 158 (284)
T ss_pred HcCCCeecCcEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 44444433456888888776 23456667766676554 34579999999 99999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------------
Q 041970 234 KSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------------- 298 (327)
Q Consensus 234 ~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------------- 298 (327)
+.|++|++.|++. +++++. .+|.. + .+ +.++||+|++|+..
T Consensus 159 ~~A~~n~~~~~~~-~~i~~~--~~D~~--------~------------~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ 214 (284)
T TIGR03533 159 AVAEINIERHGLE-DRVTLI--QSDLF--------A------------AL-PGRKYDLIVSNPPYVDAEDMADLPAEYHH 214 (284)
T ss_pred HHHHHHHHHcCCC-CcEEEE--ECchh--------h------------cc-CCCCccEEEECCCCCCccchhhCCHhhhc
Confidence 9999999999986 567764 45542 0 11 13579999999641
Q ss_pred -------------HHHHHHHHHHhhccCCCcEEEE
Q 041970 299 -------------NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 299 -------------~vL~~L~p~i~~~LkpGG~LIl 320 (327)
..+..++..+.++|+|||++++
T Consensus 215 ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 215 EPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2346678889999999999986
No 12
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=6.9e-10 Score=100.65 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=75.3
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN 243 (327)
..+.+.+|..+++..+ +..++++|+ +++|++|||+|| +|+++.+++.|++|++.+
T Consensus 45 ~~~~~~~~~~~~~p~~--~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~ 120 (205)
T PRK13944 45 RPLPLFAGATISAPHM--VAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL 120 (205)
T ss_pred CCcccCCCCEechHHH--HHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 4455666666654432 334444443 467889999999 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
++. +++++. .+|.. + ......+||+|+++..... +.+.+.+.|+|||+|++.
T Consensus 121 ~~~-~~v~~~--~~d~~--------~------------~~~~~~~fD~Ii~~~~~~~---~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 121 GYW-GVVEVY--HGDGK--------R------------GLEKHAPFDAIIVTAAAST---IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCC-CcEEEE--ECCcc--------c------------CCccCCCccEEEEccCcch---hhHHHHHhcCcCcEEEEE
Confidence 886 456654 35542 0 1112468999999976543 446788999999999874
No 13
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.00 E-value=4.5e-09 Score=101.45 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=86.2
Q ss_pred EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhcC-C-Ceeeeeee--------------------ecCCHHHH
Q 041970 176 IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKG-G-ELFLDYGT--------------------VDIDPQVI 233 (327)
Q Consensus 176 I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~-g-~~VLDvGc--------------------VDIDp~AV 233 (327)
|...|.-....+.++|++-+ -..+|..+....+.+.++. + .+|||+|| +|+++.|+
T Consensus 93 i~g~~~F~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al 170 (307)
T PRK11805 93 LTNEAWFCGLEFYVDERVLV--PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDAL 170 (307)
T ss_pred HcCcceEcCcEEEECCCCcC--CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence 44555433456888898876 2445666666666655442 3 68999999 99999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------------
Q 041970 234 KSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------------- 298 (327)
Q Consensus 234 ~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------------- 298 (327)
+.|++|++.|++. +++++. .+|.. + .+ +.++||+|++|+..
T Consensus 171 ~~A~~n~~~~~l~-~~i~~~--~~D~~--------~------------~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~ 226 (307)
T PRK11805 171 AVAEINIERHGLE-DRVTLI--ESDLF--------A------------AL-PGRRYDLIVSNPPYVDAEDMADLPAEYRH 226 (307)
T ss_pred HHHHHHHHHhCCC-CcEEEE--ECchh--------h------------hC-CCCCccEEEECCCCCCccchhhcCHhhcc
Confidence 9999999999986 567764 45542 0 11 13579999999632
Q ss_pred -------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970 299 -------------NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 299 -------------~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+.+..++..+.++|+|||++++-
T Consensus 227 eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 227 EPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 23467788899999999999873
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.97 E-value=3.8e-09 Score=105.45 Aligned_cols=124 Identities=18% Similarity=0.266 Sum_probs=93.3
Q ss_pred CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970 183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN 243 (327)
+.+...+|+.-..-||.+-..|.--.++.++. +|++|||+|| ||+++.|++.|++|+++|
T Consensus 188 ~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~-~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N 266 (396)
T PRK15128 188 HGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV-ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN 266 (396)
T ss_pred CCEEEEEecccccccCcChhhHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 45678899988899999988777777777664 5899999999 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhc
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSY 311 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~ 311 (327)
+++.+++++. .+|++ +.+.. .....++||+|++|++. .-+..+.....++
T Consensus 267 gl~~~~v~~i--~~D~~---------~~l~~-------~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l 328 (396)
T PRK15128 267 KLDLSKAEFV--RDDVF---------KLLRT-------YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL 328 (396)
T ss_pred CCCCCcEEEE--EccHH---------HHHHH-------HHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9863456664 46653 11100 00014589999999874 2355666778899
Q ss_pred cCCCcEEEE---eeccC
Q 041970 312 AKPGAVVGI---SGILS 325 (327)
Q Consensus 312 LkpGG~LIl---SGIl~ 325 (327)
|+|||.|++ |+.+.
T Consensus 329 Lk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 329 LNPGGILLTFSCSGLMT 345 (396)
T ss_pred cCCCeEEEEEeCCCcCC
Confidence 999999997 65553
No 15
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.95 E-value=8.9e-09 Score=103.26 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=89.1
Q ss_pred EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHH
Q 041970 176 IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKS 235 (327)
Q Consensus 176 I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~ 235 (327)
|...++-....+.++||+-+ ..|.|...++.+.+.+.++.+|||+|| +|+|+.|++.
T Consensus 214 IlG~~~F~G~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~ 290 (423)
T PRK14966 214 ILGVREFYGRRFAVNPNVLI---PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 290 (423)
T ss_pred EeeeeeecCcEEEeCCCccC---CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 45555533457889999766 478999999988877777789999999 9999999999
Q ss_pred HHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----------------
Q 041970 236 AHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----------------- 298 (327)
Q Consensus 236 A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----------------- 298 (327)
|++|++.|+. ++++. .+|.. +. .....++||+|++|++.
T Consensus 291 AreNa~~~g~---rV~fi--~gDl~--------e~-----------~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP 346 (423)
T PRK14966 291 ARKNAADLGA---RVEFA--HGSWF--------DT-----------DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEP 346 (423)
T ss_pred HHHHHHHcCC---cEEEE--Ecchh--------cc-----------ccccCCCccEEEECCCCCCcchhhhcchhhhcCH
Confidence 9999999875 35553 46642 00 01113579999999852
Q ss_pred -----------HHHHHHHHHHhhccCCCcEEEE
Q 041970 299 -----------NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 299 -----------~vL~~L~p~i~~~LkpGG~LIl 320 (327)
+.+..+++.+.++|+|||++++
T Consensus 347 ~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 347 QIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred HHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 1355788888999999999876
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.92 E-value=7.9e-09 Score=96.20 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 202 TTKLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 202 TT~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
-..++..++.+.+.++.+|||+|| +|+++.+++.|++|++.++.. .++++. .++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~--~~d~ 118 (247)
T PRK15451 42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVI--EGDI 118 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEE--eCCh
Confidence 334455556666778899999999 999999999999999998875 467764 3554
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH-----HHHHHHHhhccCCCcEEEEeecc
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL-----~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
. .. +...+|+|++|...+.+ ..++..+.+.|||||.|+++...
T Consensus 119 ~---------------------~~-~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 119 R---------------------DI-AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred h---------------------hC-CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 1 11 12469999999755443 56889999999999999998754
No 17
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.1e-09 Score=98.99 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhhhcCCC-eeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 201 ATTKLCLLLLRSLIKGGE-LFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~-~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
|-|-+.++.+........ +|||+|| +||+|.|++.|++|++.||+. ++.+. .+|+
T Consensus 94 ~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~--~~~~~--~~dl 169 (280)
T COG2890 94 PDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV--RVLVV--QSDL 169 (280)
T ss_pred CchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc--cEEEE--eeec
Confidence 345666666443333233 7999999 999999999999999999983 34332 3455
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----------------------------HHHHHHHHHHhhc
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----------------------------NPLLQLADHIVSY 311 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----------------------------~vL~~L~p~i~~~ 311 (327)
+ ..+ .++||+||+|++. +++..++..+..+
T Consensus 170 f--------------------~~~--~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~ 227 (280)
T COG2890 170 F--------------------EPL--RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI 227 (280)
T ss_pred c--------------------ccc--CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH
Confidence 3 112 4599999999751 3567889999999
Q ss_pred cCCCcEEEE
Q 041970 312 AKPGAVVGI 320 (327)
Q Consensus 312 LkpGG~LIl 320 (327)
|+|||.+++
T Consensus 228 l~~~g~l~l 236 (280)
T COG2890 228 LKPGGVLIL 236 (280)
T ss_pred cCCCcEEEE
Confidence 999998876
No 18
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.88 E-value=1.4e-08 Score=94.31 Aligned_cols=103 Identities=14% Similarity=0.282 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
+...|.+|.+.. ++++|||+|| +|+|+.+++.|++|++++|+. +++++. .+|+.
T Consensus 56 ~g~~L~~l~~~~-~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~--~gda~- 130 (234)
T PLN02781 56 EGLFLSMLVKIM-NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFI--QSDAL- 130 (234)
T ss_pred HHHHHHHHHHHh-CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EccHH-
Confidence 334455555553 4779999998 999999999999999999997 678875 46652
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
+.+..+ ..-...++||+|+.+.....+..+++.+.++|+|||.+++..+
T Consensus 131 --------~~L~~l-----~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 131 --------SALDQL-----LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred --------HHHHHH-----HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 111100 0001146899999999999999999999999999999996444
No 19
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.86 E-value=2e-08 Score=94.30 Aligned_cols=119 Identities=19% Similarity=0.293 Sum_probs=81.0
Q ss_pred EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhc---CCCeeeeeee--------------------ecCCHHH
Q 041970 176 IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIK---GGELFLDYGT--------------------VDIDPQV 232 (327)
Q Consensus 176 I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc--------------------VDIDp~A 232 (327)
|...+.-....+.++||..+ ..+-|...++.+..... ++.+|||+|| +|+|+.|
T Consensus 46 i~g~~~f~g~~~~v~~~vf~---pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~a 122 (251)
T TIGR03704 46 VLGWAEFCGLRIAVDPGVFV---PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAA 122 (251)
T ss_pred hcccCeEcCeEEEECCCCcC---CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHH
Confidence 34444433467889998765 44556666665544433 2358999999 9999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------------
Q 041970 233 IKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------- 298 (327)
Q Consensus 233 V~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------- 298 (327)
++.|++|++.|++ ++. .+|.. +.+. ... .++||+|++|++.
T Consensus 123 l~~A~~N~~~~~~-----~~~--~~D~~--------~~l~--------~~~--~~~fDlVv~NPPy~~~~~~~~~~~e~~ 177 (251)
T TIGR03704 123 VRCARRNLADAGG-----TVH--EGDLY--------DALP--------TAL--RGRVDILAANAPYVPTDAIALMPPEAR 177 (251)
T ss_pred HHHHHHHHHHcCC-----EEE--Eeech--------hhcc--------hhc--CCCEeEEEECCCCCCchhhhcCCHHHH
Confidence 9999999999874 232 35542 0000 001 3579999999742
Q ss_pred ---------------HHHHHHHHHHhhccCCCcEEEEee
Q 041970 299 ---------------NPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 299 ---------------~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
+++..++..+.++|+|||++++.-
T Consensus 178 ~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 178 DHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 134578888899999999999863
No 20
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.86 E-value=1.4e-08 Score=101.12 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=96.6
Q ss_pred ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcC
Q 041970 184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNg 244 (327)
.+.+.+++.-.--||.---.|..-+++.++++ |++|||+-| ||++..|++.|++|+++||
T Consensus 186 g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg 264 (393)
T COG1092 186 GVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG 264 (393)
T ss_pred CeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC
Confidence 45677777767779999999999999999998 999999999 9999999999999999999
Q ss_pred CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhcc
Q 041970 245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYA 312 (327)
Q Consensus 245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~L 312 (327)
++.+++.+. .+|++ +.+.. ......+||+||..+++ .-+..|.....+.|
T Consensus 265 ~~~~~~~~i--~~Dvf---------~~l~~-------~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 265 LDGDRHRFI--VGDVF---------KWLRK-------AERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLL 326 (393)
T ss_pred CCccceeee--hhhHH---------HHHHH-------HHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHc
Confidence 987777764 57764 12211 11124599999999974 45677888999999
Q ss_pred CCCcEEEEe
Q 041970 313 KPGAVVGIS 321 (327)
Q Consensus 313 kpGG~LIlS 321 (327)
+|||++++|
T Consensus 327 ~pgG~l~~~ 335 (393)
T COG1092 327 APGGTLVTS 335 (393)
T ss_pred CCCCEEEEE
Confidence 999999886
No 21
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.85 E-value=1.7e-08 Score=91.95 Aligned_cols=104 Identities=16% Similarity=0.285 Sum_probs=73.9
Q ss_pred EccCcccCCCchhhH----HHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc
Q 041970 189 LNPGLAFGTGEHATT----KLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 189 idPG~AFGTG~H~TT----~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN 243 (327)
.|..++||.|.+-+. ..+++++. +++|++|||+|| +|+++.+++.|++|++.+
T Consensus 48 ~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~ 125 (215)
T TIGR00080 48 VDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL 125 (215)
T ss_pred CCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 344567888876543 34444443 468899999999 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
++. ++++. .+|.. + ......+||+|+++.... .+.+.+.+.|+|||+|++.
T Consensus 126 g~~--~v~~~--~~d~~---------~-----------~~~~~~~fD~Ii~~~~~~---~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 126 GLD--NVIVI--VGDGT---------Q-----------GWEPLAPYDRIYVTAAGP---KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCC--CeEEE--ECCcc---------c-----------CCcccCCCCEEEEcCCcc---cccHHHHHhcCcCcEEEEE
Confidence 984 46654 35542 0 011245899999886432 2345678899999999875
No 22
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.85 E-value=2.5e-08 Score=88.58 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHhh--hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970 200 HATTKLCLLLLRSL--IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD 257 (327)
Q Consensus 200 H~TT~lcLe~Le~~--~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~ 257 (327)
+.|...+.+.+-.. +.++.+|||+|| +|+++.+++.|++|++.+++. ++++. .+
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~--~~ 88 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG--NIDII--PG 88 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEE--ec
Confidence 34444444433333 357789999999 999999999999999999875 46664 34
Q ss_pred CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+.. . .+ .++||+|+++-....+..++..+.+.|+|||++++..+.
T Consensus 89 d~~---------~-----------~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 89 EAP---------I-----------EL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred Cch---------h-----------hc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 431 0 11 357999999876566777888999999999999997654
No 23
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.83 E-value=1.7e-08 Score=91.08 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=54.7
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA 305 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~ 305 (327)
+|+++.+++.|++|++.|+++ + +++. .++.. + +...++||+|++|... .+..++
T Consensus 75 iD~s~~~l~~A~~~~~~~~l~-~-i~~~--~~d~~---------~------------~~~~~~fDlV~~~~~~-~~~~~l 128 (187)
T PRK00107 75 VDSLGKKIAFLREVAAELGLK-N-VTVV--HGRAE---------E------------FGQEEKFDVVTSRAVA-SLSDLV 128 (187)
T ss_pred EeCcHHHHHHHHHHHHHcCCC-C-EEEE--eccHh---------h------------CCCCCCccEEEEcccc-CHHHHH
Confidence 999999999999999999986 3 6664 34431 1 1124589999999753 456788
Q ss_pred HHHhhccCCCcEEEEe
Q 041970 306 DHIVSYAKPGAVVGIS 321 (327)
Q Consensus 306 p~i~~~LkpGG~LIlS 321 (327)
..+.++|+|||++++.
T Consensus 129 ~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 129 ELCLPLLKPGGRFLAL 144 (187)
T ss_pred HHHHHhcCCCeEEEEE
Confidence 8999999999998865
No 24
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.81 E-value=3.9e-08 Score=86.83 Aligned_cols=94 Identities=26% Similarity=0.378 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 200 HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 200 H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
++.|.++.+.+.. .++++|||+|| +|+++.+++.|++|++.|++. +++. .+|..
T Consensus 5 ~~d~~~l~~~l~~--~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~--~~d~~- 76 (179)
T TIGR00537 5 AEDSLLLEANLRE--LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG---LDVV--MTDLF- 76 (179)
T ss_pred CccHHHHHHHHHh--cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCc---eEEE--Ecccc-
Confidence 3567777777753 35679999999 999999999999999999864 4443 34542
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------HHHHHHHHHHhhccCCCcE
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------NPLLQLADHIVSYAKPGAV 317 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------~vL~~L~p~i~~~LkpGG~ 317 (327)
+ .. .++||+|++|+.. ..+..+++.+.++|+|||+
T Consensus 77 --------~-----------~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 77 --------K-----------GV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred --------c-----------cc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 0 11 3589999999642 1356788999999999999
Q ss_pred EEEee
Q 041970 318 VGISG 322 (327)
Q Consensus 318 LIlSG 322 (327)
+++..
T Consensus 136 ~~~~~ 140 (179)
T TIGR00537 136 VQLIQ 140 (179)
T ss_pred EEEEE
Confidence 88764
No 25
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.80 E-value=5.5e-08 Score=92.52 Aligned_cols=109 Identities=25% Similarity=0.376 Sum_probs=76.1
Q ss_pred eeEEEccCcccCCCchhhHHHHHHH-HHhhh-cCC-Ceeeeeee--------------------ecCCHHHHHHHHHHHH
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLL-LRSLI-KGG-ELFLDYGT--------------------VDIDPQVIKSAHQNAA 241 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~-Le~~~-~~g-~~VLDvGc--------------------VDIDp~AV~~A~eNa~ 241 (327)
..+.++||.-. -.|.|...++. ++.+. ..+ .+|||+|| +|+++.|++.|++|++
T Consensus 83 ~~f~v~~~vli---Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 83 LEFFVNEHVLI---PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred eEEEECCCCcC---CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 45666666433 23445555544 34432 222 69999999 9999999999999999
Q ss_pred hcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----------------------
Q 041970 242 LNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----------------------- 298 (327)
Q Consensus 242 lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----------------------- 298 (327)
.|++. +++++. .+|.+ + .+ ...+||+|++|+..
T Consensus 160 ~~~~~-~~v~~~--~~d~~--------~------------~~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~g 215 (284)
T TIGR00536 160 KNQLE-HRVEFI--QSNLF--------E------------PL-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVG 215 (284)
T ss_pred HcCCC-CcEEEE--ECchh--------c------------cC-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcC
Confidence 99986 467764 45653 0 11 13379999999631
Q ss_pred -----HHHHHHHHHHhhccCCCcEEEE
Q 041970 299 -----NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 299 -----~vL~~L~p~i~~~LkpGG~LIl 320 (327)
..+..++..+.++|+|||++++
T Consensus 216 g~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 216 GDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 1456788899999999999886
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.80 E-value=1.6e-08 Score=90.98 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=67.2
Q ss_pred CchhhHHHHHHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970 198 GEHATTKLCLLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR 258 (327)
Q Consensus 198 G~H~TT~lcLe~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d 258 (327)
+.|+++..+-+.++.+ ..++.+|||+|| +|+++.+++.|+++++.+++. +.+. ..|
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~---v~~~--~~d 85 (195)
T TIGR00477 11 KKYGMTTTHSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP---LRTD--AYD 85 (195)
T ss_pred HhhCCCCchHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC---ceeE--ecc
Confidence 3466655555555433 234679999999 999999999999999998875 3332 123
Q ss_pred CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEE
Q 041970 259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIl 320 (327)
.. . ..+ ..+||+|++|... +....++..+.++|+|||++++
T Consensus 86 ~~---------~----------~~~--~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 86 IN---------A----------AAL--NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ch---------h----------ccc--cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 20 0 011 3579999998653 3456788999999999998543
No 27
>PRK14967 putative methyltransferase; Provisional
Probab=98.79 E-value=3.3e-08 Score=90.50 Aligned_cols=106 Identities=25% Similarity=0.363 Sum_probs=76.4
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhh-hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCC
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSL-IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNI 245 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~-~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv 245 (327)
.+.-.||+ |-. ..-|++..+++.+. ++++++|||+|| +|+++.+++.|++|++.|++
T Consensus 8 ~~~~~~g~-~~p--~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~ 84 (223)
T PRK14967 8 ALLRAPGV-YRP--QEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV 84 (223)
T ss_pred eeecCCCC-cCC--CCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 45556664 222 22467888888765 467889999999 99999999999999999986
Q ss_pred CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------HHH
Q 041970 246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------NPL 301 (327)
Q Consensus 246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------~vL 301 (327)
. +.+. .+|.. + .. ..++||+|++|+.. ..+
T Consensus 85 ~---~~~~--~~d~~---------~-----------~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (223)
T PRK14967 85 D---VDVR--RGDWA---------R-----------AV-EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVL 138 (223)
T ss_pred e---eEEE--ECchh---------h-----------hc-cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHH
Confidence 3 4443 34431 0 01 24689999999631 125
Q ss_pred HHHHHHHhhccCCCcEEEE
Q 041970 302 LQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 302 ~~L~p~i~~~LkpGG~LIl 320 (327)
..++..+.++|||||++++
T Consensus 139 ~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 139 DRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 6678889999999999986
No 28
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.76 E-value=5.9e-08 Score=103.29 Aligned_cols=116 Identities=17% Similarity=0.271 Sum_probs=86.5
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNI 245 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv 245 (327)
+...+|..-..-||..--.|.--+++.++. +|++|||+|| ||+++.|++.|++|+++||+
T Consensus 508 ~~f~v~~~~~~~tG~flDqr~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~ 586 (702)
T PRK11783 508 AKLLVNLTDYLDTGLFLDHRPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL 586 (702)
T ss_pred EEEEEEcCCCCcceECHHHHHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 455666655577888766666666777665 4889999999 99999999999999999998
Q ss_pred CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------------HHHHHHHHHHhhc
Q 041970 246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------------NPLLQLADHIVSY 311 (327)
Q Consensus 246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------------~vL~~L~p~i~~~ 311 (327)
+.+++++. .+|++ +.+. .. .++||+||+|+.. ..+..++..+.++
T Consensus 587 ~~~~v~~i--~~D~~---------~~l~--------~~--~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~l 645 (702)
T PRK11783 587 SGRQHRLI--QADCL---------AWLK--------EA--REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRL 645 (702)
T ss_pred CccceEEE--EccHH---------HHHH--------Hc--CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHH
Confidence 64467764 45642 1111 11 4589999999863 1345678888999
Q ss_pred cCCCcEEEEee
Q 041970 312 AKPGAVVGISG 322 (327)
Q Consensus 312 LkpGG~LIlSG 322 (327)
|+|||.|+++.
T Consensus 646 L~~gG~l~~~~ 656 (702)
T PRK11783 646 LRPGGTLYFSN 656 (702)
T ss_pred cCCCCEEEEEe
Confidence 99999998864
No 29
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.75 E-value=1.2e-07 Score=77.07 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=66.4
Q ss_pred cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970 215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274 (327)
Q Consensus 215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~ 274 (327)
.++++|||+|| +|+++.+++.|++|++.+++. ++++. .++.. ...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~--~~~~~---------~~~-- 82 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS--NIVIV--EGDAP---------EAL-- 82 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC--ceEEE--ecccc---------ccC--
Confidence 45679999999 999999999999999999875 35553 34431 000
Q ss_pred cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.. ...+||+|++.-....+..++..+.+.|+|||+|+++++.
T Consensus 83 ------~~--~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 124 (124)
T TIGR02469 83 ------ED--SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAIT 124 (124)
T ss_pred ------hh--hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEecC
Confidence 00 1358999998765566778999999999999999999873
No 30
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.75 E-value=1.1e-08 Score=83.06 Aligned_cols=74 Identities=20% Similarity=0.378 Sum_probs=54.4
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------ 299 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------ 299 (327)
+|+||.+++.|++|++.+++. +++++. .+|.. +... .. ..++||+|++|+...
T Consensus 29 vdi~~~~~~~a~~~~~~~~~~-~~~~~~--~~D~~---------~~~~--------~~-~~~~~D~Iv~npP~~~~~~~~ 87 (117)
T PF13659_consen 29 VDIDPEAVELARRNLPRNGLD-DRVEVI--VGDAR---------DLPE--------PL-PDGKFDLIVTNPPYGPRSGDK 87 (117)
T ss_dssp EESSHHHHHHHHHHCHHCTTT-TTEEEE--ESHHH---------HHHH--------TC-TTT-EEEEEE--STTSBTT--
T ss_pred EEECHHHHHHHHHHHHHccCC-ceEEEE--ECchh---------hchh--------hc-cCceeEEEEECCCCccccccc
Confidence 999999999999999999986 567775 34431 1110 12 367899999998643
Q ss_pred -----HHHHHHHHHhhccCCCcEEEE
Q 041970 300 -----PLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 300 -----vL~~L~p~i~~~LkpGG~LIl 320 (327)
....++..+.++|||||.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 88 AALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 356789999999999999876
No 31
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.73 E-value=4.2e-08 Score=87.80 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=53.8
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA 305 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~ 305 (327)
+|+++.+++.|++|++.++++ ++++. .+|.. + +...++||+|++|.+ ..+..+.
T Consensus 72 iD~s~~~~~~a~~~~~~~~~~--~i~~i--~~d~~---------~------------~~~~~~fD~I~s~~~-~~~~~~~ 125 (181)
T TIGR00138 72 LESNHKKVAFLREVKAELGLN--NVEIV--NGRAE---------D------------FQHEEQFDVITSRAL-ASLNVLL 125 (181)
T ss_pred EeCcHHHHHHHHHHHHHhCCC--CeEEE--ecchh---------h------------ccccCCccEEEehhh-hCHHHHH
Confidence 999999999999999999885 36664 45541 1 112468999999984 4456677
Q ss_pred HHHhhccCCCcEEEEe
Q 041970 306 DHIVSYAKPGAVVGIS 321 (327)
Q Consensus 306 p~i~~~LkpGG~LIlS 321 (327)
..+.++|+|||++++.
T Consensus 126 ~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 126 ELTLNLLKVGGYFLAY 141 (181)
T ss_pred HHHHHhcCCCCEEEEE
Confidence 8889999999998864
No 32
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.73 E-value=5.5e-08 Score=96.67 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=78.5
Q ss_pred eeEEEccCcccCCCchhhH-HH------HHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHH
Q 041970 185 TNIILNPGLAFGTGEHATT-KL------CLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSA 236 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT-~l------cLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A 236 (327)
..+.+||+|.+++|.|..+ .+ .+.++.+. +++|++|||+|| +|+++.+++.|
T Consensus 127 y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A 206 (383)
T PRK11705 127 FEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLA 206 (383)
T ss_pred HHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4588999999999998532 11 22222222 368899999999 99999999999
Q ss_pred HHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhc
Q 041970 237 HQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSY 311 (327)
Q Consensus 237 ~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~ 311 (327)
++|++ ++. +++. ..|.. .+ .++||+|+++-..+ .+..++..+.+.
T Consensus 207 ~~~~~--~l~---v~~~--~~D~~---------------------~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~ 256 (383)
T PRK11705 207 QERCA--GLP---VEIR--LQDYR---------------------DL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRC 256 (383)
T ss_pred HHHhc--cCe---EEEE--ECchh---------------------hc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHH
Confidence 99984 332 4442 23321 12 46899999985433 346788999999
Q ss_pred cCCCcEEEEeecc
Q 041970 312 AKPGAVVGISGIL 324 (327)
Q Consensus 312 LkpGG~LIlSGIl 324 (327)
|||||+++++.|.
T Consensus 257 LkpGG~lvl~~i~ 269 (383)
T PRK11705 257 LKPDGLFLLHTIG 269 (383)
T ss_pred cCCCcEEEEEEcc
Confidence 9999999998664
No 33
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.72 E-value=3.4e-08 Score=92.82 Aligned_cols=103 Identities=21% Similarity=0.367 Sum_probs=74.0
Q ss_pred cCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcE
Q 041970 191 PGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKM 250 (327)
Q Consensus 191 PG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v 250 (327)
.|+.|||- .+.|-..-.. ....+|||+|| ||+++.+++.|++|+++|+++ +|+
T Consensus 25 ~~~~~~~D-----aiLL~~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri 97 (248)
T COG4123 25 CGFRYGTD-----AILLAAFAPV-PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERI 97 (248)
T ss_pred CccccccH-----HHHHHhhccc-ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hce
Confidence 46777763 2333333322 23679999999 999999999999999999998 788
Q ss_pred EEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------------------HHHHHHHHHHh
Q 041970 251 KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---------------------NPLLQLADHIV 309 (327)
Q Consensus 251 ~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---------------------~vL~~L~p~i~ 309 (327)
++. ++|. .+... .. ...+||+|+||++. ..+..++....
T Consensus 98 ~v~--~~Di---------~~~~~--------~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~ 157 (248)
T COG4123 98 QVI--EADI---------KEFLK--------AL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAA 157 (248)
T ss_pred eEe--hhhH---------HHhhh--------cc-cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHH
Confidence 875 4554 12111 11 23479999999862 12567788899
Q ss_pred hccCCCcEEEE
Q 041970 310 SYAKPGAVVGI 320 (327)
Q Consensus 310 ~~LkpGG~LIl 320 (327)
+.|||||++.+
T Consensus 158 ~~lk~~G~l~~ 168 (248)
T COG4123 158 KLLKPGGRLAF 168 (248)
T ss_pred HHccCCCEEEE
Confidence 99999999875
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.71 E-value=8.2e-08 Score=90.51 Aligned_cols=102 Identities=17% Similarity=0.297 Sum_probs=74.0
Q ss_pred cCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041970 195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV 255 (327)
Q Consensus 195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~ 255 (327)
+++|..+.|+.++..+. +.++.+|||+|| +|+++.+++.|++++..+ +++.+.
T Consensus 33 ~~~gg~~~~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~-- 104 (263)
T PTZ00098 33 ISSGGIEATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK----NKIEFE-- 104 (263)
T ss_pred CCCCchHHHHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC----CceEEE--
Confidence 45667777877777763 567889999999 999999999999986542 345553
Q ss_pred CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcC-Ch----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI-LL----NPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI-la----~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.+|.. + ..+ +.++||+|+++- +. .....++..+.++|||||+|+++.+.
T Consensus 105 ~~D~~---------~----------~~~-~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 105 ANDIL---------K----------KDF-PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred ECCcc---------c----------CCC-CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 34431 0 012 256899999963 21 24567889999999999999998764
No 35
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.70 E-value=2.5e-08 Score=92.98 Aligned_cols=86 Identities=22% Similarity=0.292 Sum_probs=64.6
Q ss_pred cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
.+|.+|||+|| +|+++.+|+.|+..+..|++..+ .. +.. .+++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~---y~--~~~---------~edl~---- 119 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNID---YR--QAT---------VEDLA---- 119 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccccc---ch--hhh---------HHHHH----
Confidence 47899999999 99999999999999999998632 21 111 12222
Q ss_pred cccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEEEeeccC
Q 041970 277 SHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
...++||+|+|+=..+.+ ..++..+.+++||||.+++|-|-.
T Consensus 120 -------~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 120 -------SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred -------hcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 124799999998433222 347788999999999999998853
No 36
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.68 E-value=1.1e-07 Score=91.22 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=87.8
Q ss_pred CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970 183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN 243 (327)
+.+...+|+.-.=-||.-.-.|.--+++.++. .|++|||+-| ||.+..|++.|++|+++|
T Consensus 91 ~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN 169 (286)
T PF10672_consen 91 NGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN 169 (286)
T ss_dssp TTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 44677888877778999999999999998885 4899999988 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------HHHHHHHHHHhhccCC
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---------NPLLQLADHIVSYAKP 314 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---------~vL~~L~p~i~~~Lkp 314 (327)
|++.+++++. ..|++ +.+. .+...++||+||.++++ .-+..|+..+.++|+|
T Consensus 170 g~~~~~~~~~--~~Dvf---------~~l~--------~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~ 230 (286)
T PF10672_consen 170 GLDLDRHRFI--QGDVF---------KFLK--------RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKP 230 (286)
T ss_dssp T-CCTCEEEE--ES-HH---------HHHH--------HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEE
T ss_pred CCCccceEEE--ecCHH---------HHHH--------HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9986777764 45653 1111 01124689999999874 4567788899999999
Q ss_pred CcEEEEe
Q 041970 315 GAVVGIS 321 (327)
Q Consensus 315 GG~LIlS 321 (327)
||.|+++
T Consensus 231 gG~l~~~ 237 (286)
T PF10672_consen 231 GGLLLTC 237 (286)
T ss_dssp EEEEEEE
T ss_pred CCEEEEE
Confidence 9998764
No 37
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=1.5e-07 Score=86.03 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=60.5
Q ss_pred hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970 214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV 272 (327)
Q Consensus 214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~ 272 (327)
+++|++|||+|| +|+++.+++.|++|++.+++. ++++. .+|.. .
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~--~v~~~--~gd~~--------~--- 138 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD--NVEVI--VGDGT--------L--- 138 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEE--ECCcc--------c---
Confidence 468899999999 999999999999999999874 46654 45542 0
Q ss_pred hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
.....++||+|+++-... .+.+.+.+.|||||+|++
T Consensus 139 ---------~~~~~~~fD~I~~~~~~~---~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 139 ---------GYEENAPYDRIYVTAAGP---DIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred ---------CCCcCCCcCEEEECCCcc---cchHHHHHhhCCCcEEEE
Confidence 111256899999876433 334567789999999876
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.67 E-value=1.7e-07 Score=86.34 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=73.3
Q ss_pred chhhHHHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970 199 EHATTKLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP 256 (327)
Q Consensus 199 ~H~TT~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~ 256 (327)
.++...+...+.+....++.+|||+|| +|+++.+++.|++|++..+.. .++++. .
T Consensus 36 y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~--~ 112 (239)
T TIGR00740 36 YSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEIL--C 112 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEE--E
Confidence 445555555555555667889999999 999999999999998876654 356654 4
Q ss_pred CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEeecc
Q 041970 257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+|.. ... ...+|+|++|...+. ...++..+.+.|+|||.++++...
T Consensus 113 ~d~~---------------------~~~-~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 113 NDIR---------------------HVE-IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred CChh---------------------hCC-CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 5541 111 235899999865433 367889999999999999998653
No 39
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.67 E-value=1.3e-07 Score=97.10 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=62.9
Q ss_pred CCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
+.+|||+|| +|+++.|++.|++|++.|++. +++.+. .+|.+ +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~--~~D~~--------~------- 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQII--HSNWF--------E------- 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeee--ecchh--------h-------
Confidence 468999999 999999999999999999986 567664 45542 0
Q ss_pred cccccCCCCCCCeeEEEEcCCh-----------------------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970 277 SHKIRGISETEEYDVVIANILL-----------------------------NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla-----------------------------~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.+ ..++||+||+|+.. +.+..++..+.++|+|||.+++.
T Consensus 201 -----~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 201 -----NI-EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred -----hC-cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 14589999999741 23456788899999999999874
No 40
>PLN02244 tocopherol O-methyltransferase
Probab=98.64 E-value=2.2e-07 Score=90.78 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=66.5
Q ss_pred cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
+++++|||+|| +|+++.+++.|+++++.+++. +++++. .+|.. ++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~--~~D~~---------~~---- 180 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQ--VADAL---------NQ---- 180 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEE--EcCcc---------cC----
Confidence 46789999999 999999999999999999886 567764 35542 10
Q ss_pred ccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970 276 SSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI 323 (327)
.+ +++.||+|+++-.... ...++.++.++|||||+|+++..
T Consensus 181 ------~~-~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 181 ------PF-EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ------CC-CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 12 2578999999765433 35678899999999999998764
No 41
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.63 E-value=3.6e-07 Score=83.74 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhhhc-CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 201 ATTKLCLLLLRSLIK-GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~-~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
|.|...++.+.+.+. .+.+|||+|| +|+++.+++.|++|++.+++. ++.+. .+|.
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~--~~d~ 146 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--NVTFL--QSDW 146 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEE--ECch
Confidence 445555555544443 4469999999 999999999999999999885 46654 4554
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----------------------------HHHHHHHHHhh
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----------------------------PLLQLADHIVS 310 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----------------------------vL~~L~p~i~~ 310 (327)
. + .. ..++||+|++|+... .+..+++.+.+
T Consensus 147 ~--------~------------~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 147 F--------E------------PL-PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred h--------c------------cC-cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence 2 0 11 256899999997421 12367888999
Q ss_pred ccCCCcEEEEe
Q 041970 311 YAKPGAVVGIS 321 (327)
Q Consensus 311 ~LkpGG~LIlS 321 (327)
+|+|||++++.
T Consensus 206 ~L~~gG~~~~~ 216 (251)
T TIGR03534 206 LLKPGGWLLLE 216 (251)
T ss_pred hcccCCEEEEE
Confidence 99999999875
No 42
>PRK14968 putative methyltransferase; Provisional
Probab=98.62 E-value=4e-07 Score=79.58 Aligned_cols=93 Identities=28% Similarity=0.420 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970 203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM 264 (327)
Q Consensus 203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~ 264 (327)
|.+.++++.. .++++|||+|| +|+++.+++.|++|++.|++....+.+. .+|..
T Consensus 12 ~~~l~~~~~~--~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~--~~d~~---- 83 (188)
T PRK14968 12 SFLLAENAVD--KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVI--RSDLF---- 83 (188)
T ss_pred HHHHHHhhhc--cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEE--ecccc----
Confidence 4555555543 56778999999 8999999999999999998863225543 34432
Q ss_pred cccccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------HHHHHHHHHHhhccCCCcEEEE
Q 041970 265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------~vL~~L~p~i~~~LkpGG~LIl 320 (327)
+ .+ ...+||+|++|... ..+..++..+.++|||||.+++
T Consensus 84 ----~------------~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 84 ----E------------PF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ----c------------cc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 0 11 13479999999642 3356688999999999998765
No 43
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.61 E-value=2.9e-07 Score=83.94 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=72.9
Q ss_pred CCchhhHHHHHHHHHhhh---cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970 197 TGEHATTKLCLLLLRSLI---KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL 254 (327)
Q Consensus 197 TG~H~TT~lcLe~Le~~~---~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~ 254 (327)
.|+.|||....+.+-..+ ..+.+|||+|| +|+|+.|++.|++|++.|++. ++++.
T Consensus 31 ~~~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~- 107 (199)
T PRK10909 31 PGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG--NARVV- 107 (199)
T ss_pred CCcCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEE-
Confidence 356899988866555443 35789999999 999999999999999999975 46654
Q ss_pred cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC--hHHHHHHHHHHhh--ccCCCcEEEEe
Q 041970 255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL--LNPLLQLADHIVS--YAKPGAVVGIS 321 (327)
Q Consensus 255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl--a~vL~~L~p~i~~--~LkpGG~LIlS 321 (327)
.+|+. +.+. . ..++||+|++|+. .+....++..+.. .++|+|.++++
T Consensus 108 -~~D~~---------~~l~--------~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 108 -NTNAL---------SFLA--------Q--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred -EchHH---------HHHh--------h--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 45542 1110 0 1346999999998 3444555555554 37899998876
No 44
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.59 E-value=3.5e-07 Score=82.51 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=60.4
Q ss_pred CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970 216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS 277 (327)
Q Consensus 216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~ 277 (327)
++.+|||+|| +|+++.+++.|+++++.+++. .+++. ..|..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~--~v~~~--~~d~~----------------- 88 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD--NLHTA--VVDLN----------------- 88 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC--cceEE--ecChh-----------------
Confidence 4568888888 999999999999999998875 24443 23431
Q ss_pred ccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEE-eec
Q 041970 278 HKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGI-SGI 323 (327)
Q Consensus 278 ~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIl-SGI 323 (327)
.....++||+|++|...+ ....++..+.++|+|||++++ ..+
T Consensus 89 ----~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 89 ----NLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred ----hCCcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 011145799999986532 456789999999999999554 443
No 45
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.59 E-value=2.3e-07 Score=87.05 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=65.4
Q ss_pred hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970 214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV 272 (327)
Q Consensus 214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~ 272 (327)
+++|++|||+|| +|+++.+++.|++|++.+++. ++++. .++.. ++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~--~v~~~--~~d~~---------~l- 140 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--NVEFR--LGEIE---------AL- 140 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC--CEEEE--Ecchh---------hC-
Confidence 456777888877 999999999999999998874 46653 34431 11
Q ss_pred hhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeeccC
Q 041970 273 EYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
.+ ..+.||+|++|-..+ ....++..+.++|||||+|+++++..
T Consensus 141 ---------~~-~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 141 ---------PV-ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ---------CC-CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 11 246899999996432 23567889999999999999998753
No 46
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.57 E-value=2.1e-07 Score=79.81 Aligned_cols=86 Identities=24% Similarity=0.395 Sum_probs=63.7
Q ss_pred cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970 215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE 273 (327)
Q Consensus 215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~ 273 (327)
+.+.+|||+|| +|+++.+|+.|+++++.+++. ++++. .+|.. ++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~--~~d~~---------~l~- 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFI--QGDIE---------DLP- 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEE--ESBTT---------CGC-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc--ccceE--Eeehh---------ccc-
Confidence 35677888888 999999999999999999986 57775 35542 110
Q ss_pred hcccccccCCCCCCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEEEeec
Q 041970 274 YLSSHKIRGISETEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 274 ~~~~~~~~~~~~~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
..+ .++||+|+++... .....++..+.+.|++||.++++-.
T Consensus 68 -------~~~--~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 68 -------QEL--EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp -------GCS--STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------ccc--CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 001 2689999999643 3345678899999999999998754
No 47
>PLN02672 methionine S-methyltransferase
Probab=98.57 E-value=7.9e-07 Score=98.16 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=85.6
Q ss_pred eEEEcCcEEEEcCCC---CCceeEEEccCcccCCCchhhHHHHHHHHHhhhc---CCCeeeeeee---------------
Q 041970 167 PVEVTKGLWIVPEWN---VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIK---GGELFLDYGT--------------- 225 (327)
Q Consensus 167 P~~vg~~l~I~P~W~---~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc--------------- 225 (327)
++++. .+++.|.-- -....+.++||+-== -|-|...+++|..... ++.+|||+||
T Consensus 67 ~~~~~-~~~~~~~~G~~~F~~l~~~V~p~VLIP---RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~ 142 (1082)
T PLN02672 67 HFRIH-DLVLDDYEGFRNRKKLTMMEIPSIFIP---EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLP 142 (1082)
T ss_pred ceEEe-eEEEcCCCCeEEecCCceeeCCCcccC---chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCC
Confidence 35664 466665321 123567777775322 1667777877765321 3569999999
Q ss_pred -----ecCCHHHHHHHHHHHHhcCCCC--------------CcEEEEecCCCCCCCCccccccchhhhcccccccCCCC-
Q 041970 226 -----VDIDPQVIKSAHQNAALNNIGP--------------KKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISE- 285 (327)
Q Consensus 226 -----VDIDp~AV~~A~eNa~lNgv~~--------------~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~- 285 (327)
+||++.|++.|++|+++|+++. +++++. .+|++. ....
T Consensus 143 ~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~--~sDl~~--------------------~~~~~ 200 (1082)
T PLN02672 143 SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY--ESDLLG--------------------YCRDN 200 (1082)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE--ECchhh--------------------hcccc
Confidence 9999999999999999997631 356654 567530 1111
Q ss_pred CCCeeEEEEcCCh-----------H------------------------------HHHHHHHHHhhccCCCcEEEE
Q 041970 286 TEEYDVVIANILL-----------N------------------------------PLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 286 ~~~fDlVvANIla-----------~------------------------------vL~~L~p~i~~~LkpGG~LIl 320 (327)
..+||+||+|+.. + .+.++++...++|+|||++++
T Consensus 201 ~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 201 NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2379999999851 1 125677888899999999886
No 48
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.57 E-value=1.6e-07 Score=89.54 Aligned_cols=112 Identities=17% Similarity=0.314 Sum_probs=70.4
Q ss_pred EEEccCcccCCCchhhHHHH--------HHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHH
Q 041970 187 IILNPGLAFGTGEHATTKLC--------LLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAH 237 (327)
Q Consensus 187 I~idPG~AFGTG~H~TT~lc--------Le~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~ 237 (327)
+.|||.|.++.|.-++...- ++.+.+. +++|++|||+|| +.+++.-++.|+
T Consensus 23 l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 23 LFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR 102 (273)
T ss_dssp TTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH
T ss_pred HhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH
Confidence 45778888777664443332 3333222 579999999999 999999999999
Q ss_pred HHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhcc
Q 041970 238 QNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYA 312 (327)
Q Consensus 238 eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~L 312 (327)
+.++..|+. +++++.+ .|. +.+ ..+||.||+--..+ -+..++..+.+.|
T Consensus 103 ~~~~~~gl~-~~v~v~~--~D~---------------------~~~--~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L 156 (273)
T PF02353_consen 103 ERIREAGLE-DRVEVRL--QDY---------------------RDL--PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLL 156 (273)
T ss_dssp HHHHCSTSS-STEEEEE--S-G---------------------GG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHS
T ss_pred HHHHhcCCC-CceEEEE--eec---------------------ccc--CCCCCEEEEEechhhcChhHHHHHHHHHHHhc
Confidence 999999997 6788753 332 122 45999999875433 4578899999999
Q ss_pred CCCcEEEEeecc
Q 041970 313 KPGAVVGISGIL 324 (327)
Q Consensus 313 kpGG~LIlSGIl 324 (327)
||||++++-.|.
T Consensus 157 kpgG~~~lq~i~ 168 (273)
T PF02353_consen 157 KPGGRLVLQTIT 168 (273)
T ss_dssp ETTEEEEEEEEE
T ss_pred CCCcEEEEEecc
Confidence 999999987764
No 49
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.57 E-value=3.5e-07 Score=82.30 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=67.1
Q ss_pred hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970 214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV 272 (327)
Q Consensus 214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~ 272 (327)
+.+|++|||+|| +|+++.+++.|++|++.|++. +++.+. .+|.. +..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~--~~d~~---------~~l 105 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLI--KGEAP---------EIL 105 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEE--Eechh---------hhH
Confidence 357788999998 999999999999999999965 456653 34431 111
Q ss_pred hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970 273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
. . ..++||+|++|.-...+..++..+.+.|+|||+++++-+
T Consensus 106 ~--------~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 106 F--------T--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred h--------h--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 0 1 135799999987666778889999999999999987543
No 50
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.53 E-value=7.9e-07 Score=82.96 Aligned_cols=108 Identities=21% Similarity=0.389 Sum_probs=72.6
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN 243 (327)
.+.++|++.. --|.|...++++.... .++.+|||+|| +|+++.+++.|++|++ +
T Consensus 79 ~~~~~~~~li---pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~ 154 (275)
T PRK09328 79 DFKVSPGVLI---PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-H 154 (275)
T ss_pred EEEECCCcee---CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-h
Confidence 4555555332 2355666666665332 35679999999 9999999999999998 3
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------- 298 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------- 298 (327)
+.. .++.+. .+|.+ . .. ..++||+|++|+..
T Consensus 155 ~~~-~~i~~~--~~d~~--------~------------~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g 210 (275)
T PRK09328 155 GLG-ARVEFL--QGDWF--------E------------PL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG 210 (275)
T ss_pred CCC-CcEEEE--Ecccc--------C------------cC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC
Confidence 332 346654 34542 0 11 14689999999642
Q ss_pred ----HHHHHHHHHHhhccCCCcEEEEe
Q 041970 299 ----NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 299 ----~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
..+..++..+.++|+|||++++.
T Consensus 211 ~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 211 EDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 22356777888999999999873
No 51
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.52 E-value=3.4e-07 Score=85.34 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=64.6
Q ss_pred HHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccch
Q 041970 210 LRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGI 271 (327)
Q Consensus 210 Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l 271 (327)
|+.+..++.+|||+|| +|+++.+++.|++|++.+++. +++++. .++.. ++
T Consensus 38 l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~--~~d~~---------~l 105 (255)
T PRK11036 38 LAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFI--HCAAQ---------DI 105 (255)
T ss_pred HHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc-cceEEE--EcCHH---------HH
Confidence 3333345679999999 999999999999999998875 456654 34431 11
Q ss_pred hhhcccccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEEEe
Q 041970 272 VEYLSSHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 272 ~~~~~~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LIlS 321 (327)
. .. ..++||+|+++-..+.+ ..++..+.++|||||++++.
T Consensus 106 ~---------~~-~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 106 A---------QH-LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred h---------hh-cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 0 11 25689999998654322 46788999999999999764
No 52
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.50 E-value=7.3e-07 Score=90.20 Aligned_cols=100 Identities=23% Similarity=0.245 Sum_probs=71.0
Q ss_pred CchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970 198 GEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR 258 (327)
Q Consensus 198 G~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d 258 (327)
+...+|...++.+. +.++.+|||+|| +|+++.+++.|++|+... . .++++. .+|
T Consensus 250 ~~v~~te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~-~~v~~~--~~d 322 (475)
T PLN02336 250 GGLETTKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--K-CSVEFE--VAD 322 (475)
T ss_pred chHHHHHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--C-CceEEE--EcC
Confidence 34456666666664 467889999999 999999999999998533 2 346654 355
Q ss_pred CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970 259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.. . ..+ +.++||+|+++-... -...++..+.+.|||||+++++...
T Consensus 323 ~~---------~----------~~~-~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 323 CT---------K----------KTY-PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cc---------c----------CCC-CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 42 0 011 246899999974322 2356889999999999999998653
No 53
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.49 E-value=6.8e-07 Score=81.43 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=62.2
Q ss_pred hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970 214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV 272 (327)
Q Consensus 214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~ 272 (327)
+++|++|||+|| +|+++.+++.|++|++.+++. ++++. .+|.. ++
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~v~~~--~~d~~---------~~- 108 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH--NVELV--HGNAM---------EL- 108 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEE--Eechh---------cC-
Confidence 356789999999 999999999999999888764 46553 34431 00
Q ss_pred hhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEe
Q 041970 273 EYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.. +.++||+|+++...+ ....++..+.+.|+|||++++.
T Consensus 109 ---------~~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 109 ---------PF-DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred ---------CC-CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 11 256899999875422 2456788899999999999875
No 54
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=1.7e-06 Score=82.42 Aligned_cols=142 Identities=14% Similarity=0.189 Sum_probs=101.3
Q ss_pred hhHHHHhhcCceEEEcCcEEEEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhc-----CCCeeeeeee-----
Q 041970 156 NWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIK-----GGELFLDYGT----- 225 (327)
Q Consensus 156 DW~~~Wk~~f~P~~vg~~l~I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~-----~g~~VLDvGc----- 225 (327)
+-.+.|.+.++-+++ =+|..+|.-+.+.|...||+--- -|-|..-+++..+.++ .+..+||+||
T Consensus 89 ~i~~~~~~R~~r~Pl---QYIlg~~~F~~l~l~~~pgVlIP---RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaI 162 (328)
T KOG2904|consen 89 SIRWACLQRYKRMPL---QYILGSQPFGDLDLVCKPGVLIP---RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAI 162 (328)
T ss_pred HHHHHHHHHHhcCCh---hheeccCccCCceEEecCCeeec---CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHH
Confidence 345557776664444 24778888677888888887543 4677777777766553 3457999999
Q ss_pred ---------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec--CCCCCCCCccccccchhhhcccccccCCCCCCC
Q 041970 226 ---------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV--PDRTFPSSMNERVDGIVEYLSSHKIRGISETEE 288 (327)
Q Consensus 226 ---------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~--~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~ 288 (327)
||.++.|+..|.||++++++. +++.++.- .++.+ ++. . ...++
T Consensus 163 slsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~~~me~d~~--------~~~----------~-l~~~~ 222 (328)
T KOG2904|consen 163 SLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIHNIMESDAS--------DEH----------P-LLEGK 222 (328)
T ss_pred HHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEecccccccc--------ccc----------c-cccCc
Confidence 999999999999999999998 67887521 12221 111 0 12579
Q ss_pred eeEEEEcCCh-----------------------------HHHHHHHHHHhhccCCCcEEEEeec
Q 041970 289 YDVVIANILL-----------------------------NPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 289 fDlVvANIla-----------------------------~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
+|++++|+.. +.+..+..-+.+.|+|||.+.++=+
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 9999999852 4556677778899999999988744
No 55
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.48 E-value=7.3e-07 Score=86.89 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=63.7
Q ss_pred cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
.+|.+|||||| ||+++.+++.|+++++.++.. .++.+. .++. +++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~--~~da---------e~l----- 192 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVT-STIEYL--CTTA---------EKL----- 192 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEE--ecCH---------HHh-----
Confidence 35779999999 999999999999998887654 356654 2332 111
Q ss_pred cccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970 277 SHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI 323 (327)
.. ..++||+|++.-..+. ...++..+.++|||||.++++-+
T Consensus 193 -----~~-~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 193 -----AD-EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred -----hh-ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 01 2568999999754332 25688899999999999998843
No 56
>PLN03075 nicotianamine synthase; Provisional
Probab=98.48 E-value=8.4e-07 Score=85.56 Aligned_cols=73 Identities=25% Similarity=0.423 Sum_probs=56.2
Q ss_pred ecCCHHHHHHHHHHHHh-cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC----hHH
Q 041970 226 VDIDPQVIKSAHQNAAL-NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL----LNP 300 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~l-Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl----a~v 300 (327)
+|+|+.|++.||++++. .++. +++++. .+|+. +. ....++||+|+++.+ +..
T Consensus 155 iD~d~~ai~~Ar~~~~~~~gL~-~rV~F~--~~Da~---------~~-----------~~~l~~FDlVF~~ALi~~dk~~ 211 (296)
T PLN03075 155 FDIDPSANDVARRLVSSDPDLS-KRMFFH--TADVM---------DV-----------TESLKEYDVVFLAALVGMDKEE 211 (296)
T ss_pred EeCCHHHHHHHHHHhhhccCcc-CCcEEE--ECchh---------hc-----------ccccCCcCEEEEeccccccccc
Confidence 99999999999999964 7886 678886 36653 00 111368999999943 245
Q ss_pred HHHHHHHHhhccCCCcEEEEe
Q 041970 301 LLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 301 L~~L~p~i~~~LkpGG~LIlS 321 (327)
-.+++..+.+.|+|||+|++-
T Consensus 212 k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 212 KVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred HHHHHHHHHHhcCCCcEEEEe
Confidence 677899999999999999875
No 57
>PLN02476 O-methyltransferase
Probab=98.47 E-value=7.4e-07 Score=85.24 Aligned_cols=106 Identities=14% Similarity=0.250 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
|.+...|.+|-+.. +.++|||+|| +|+|+.+.+.|++|++++|+. +++++. .|++
T Consensus 104 ~~~g~lL~~L~~~~-~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li--~GdA 179 (278)
T PLN02476 104 PDQAQLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVK--HGLA 179 (278)
T ss_pred HHHHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EcCH
Confidence 34556666766664 4679999999 999999999999999999998 688875 4665
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
. +.+..+ ..-...++||+|+...-..-+...+..+.++|+|||.+++-.++
T Consensus 180 ~---------e~L~~l-----~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 180 A---------ESLKSM-----IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred H---------HHHHHH-----HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 2 121100 00001358999999999888999999999999999999988765
No 58
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.46 E-value=2.3e-07 Score=85.24 Aligned_cols=89 Identities=24% Similarity=0.371 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
...++++|+ +++|++|||||| +|+++..++.|++|++..++. ++.+. .+|..
T Consensus 61 ~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~--nv~~~--~gdg~- 133 (209)
T PF01135_consen 61 VARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID--NVEVV--VGDGS- 133 (209)
T ss_dssp HHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH--SEEEE--ES-GG-
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC--ceeEE--Ecchh-
Confidence 455666666 789999999999 899999999999999999885 46664 45542
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
. .+....+||.|+.+--.. .+-..+.+.|++||+|+.
T Consensus 134 ---~----------------g~~~~apfD~I~v~~a~~---~ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 134 ---E----------------GWPEEAPFDRIIVTAAVP---EIPEALLEQLKPGGRLVA 170 (209)
T ss_dssp ---G----------------TTGGG-SEEEEEESSBBS---S--HHHHHTEEEEEEEEE
T ss_pred ---h----------------ccccCCCcCEEEEeeccc---hHHHHHHHhcCCCcEEEE
Confidence 0 122357899999987554 233567888999999986
No 59
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.45 E-value=1.1e-06 Score=81.48 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
|-|-.+|.+|-+.. +.++||++|| +|+||...+.|++|.++.|++ +++++... +|.
T Consensus 45 ~e~g~~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~-gda 121 (219)
T COG4122 45 PETGALLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLG-GDA 121 (219)
T ss_pred hhHHHHHHHHHHhc-CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEec-CcH
Confidence 55667788887764 6789999999 999999999999999999998 66776532 454
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
+ +.+. . ...++||+|+...-.......++.+.++|+|||.+++-.++.
T Consensus 122 l---------~~l~--------~-~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 122 L---------DVLS--------R-LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred H---------HHHH--------h-ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 2 1221 1 126899999999988889999999999999999999877664
No 60
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.43 E-value=1.7e-06 Score=87.37 Aligned_cols=115 Identities=12% Similarity=0.100 Sum_probs=78.8
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg 244 (327)
..+.+.|+..|=+- ...|...++.+.+++ .+|.+|||+|| +|+++.|++.|++|++.|+
T Consensus 265 ~~f~~~~~~F~q~n-~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~ 343 (443)
T PRK13168 265 LRLAFSPRDFIQVN-AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNG 343 (443)
T ss_pred eEEEECCCCeEEcC-HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 46778887755554 444555555554443 46789999999 9999999999999999999
Q ss_pred CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+. ++++. .+|+. +.... ... ...+||+|++|+...-+...+..+.+ ++|++.+++|
T Consensus 344 ~~--~v~~~--~~d~~---------~~l~~------~~~-~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 344 LD--NVTFY--HANLE---------EDFTD------QPW-ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CC--ceEEE--EeChH---------Hhhhh------hhh-hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 85 36654 45541 10000 001 13579999999886545566666555 6899998887
No 61
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.42 E-value=2.6e-06 Score=77.18 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=60.6
Q ss_pred hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
.+++++|||+|| +|+++.+++.|++|++.+++. .+++. .+|.. +
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~v~~~--~~d~~--------~------ 137 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH--NVSVR--HGDGW--------K------ 137 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC--ceEEE--ECCcc--------c------
Confidence 357789999999 999999999999999999885 35653 35531 0
Q ss_pred ccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970 276 SSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
.....++||+|+++-... .+.+.+.+.|+|||+++++=
T Consensus 138 ------~~~~~~~fD~I~~~~~~~---~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 138 ------GWPAYAPFDRILVTAAAP---EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred ------CCCcCCCcCEEEEccCch---hhhHHHHHhcCCCcEEEEEE
Confidence 111246899999886433 33467789999999998763
No 62
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.40 E-value=2.2e-06 Score=83.13 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=70.6
Q ss_pred ccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970 194 AFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL 254 (327)
Q Consensus 194 AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~ 254 (327)
.||+|. +|+....+-.+.. +++|++|||.|| +|+|+.+++.|++|++.+|+. + +.+.
T Consensus 160 ~~~~~~l~~~la~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~-i~~~- 235 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-D-FFVK- 235 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-C-CeEE-
Confidence 344443 4444333332222 466778888888 999999999999999999986 3 5543
Q ss_pred cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970 255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.+|.. ++ .. ..++||+|++|++. +.+..++..+.+.|+|||++++.
T Consensus 236 -~~D~~---------~l----------~~-~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 236 -RGDAT---------KL----------PL-SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred -ecchh---------cC----------Cc-ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 45542 11 11 14689999999642 33577889999999999998764
No 63
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.40 E-value=4.3e-07 Score=85.86 Aligned_cols=85 Identities=18% Similarity=0.328 Sum_probs=62.0
Q ss_pred CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCc----EEEEecCCCCCCCCccccccchhh
Q 041970 216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKK----MKLHLVPDRTFPSSMNERVDGIVE 273 (327)
Q Consensus 216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~----v~v~~~~~d~~~~~~~g~~~~l~~ 273 (327)
-|++|||+|| ||+.+.+|++|++.+..+-+.... +++. ..++ +
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~--~~~~---------E---- 153 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE--DTDV---------E---- 153 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehh--hcch---------h----
Confidence 4789999999 999999999999997766544222 2221 1111 1
Q ss_pred hcccccccCCCCCCCeeEEEEcCCh-HH--HHHHHHHHhhccCCCcEEEEeeccC
Q 041970 274 YLSSHKIRGISETEEYDVVIANILL-NP--LLQLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 274 ~~~~~~~~~~~~~~~fDlVvANIla-~v--L~~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
.. .++||.|||--.. ++ +..++..+.++|||||.|++|-|-.
T Consensus 154 --------~~--~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 154 --------GL--TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred --------hc--ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 12 4679999987443 33 4677888999999999999998854
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.40 E-value=1.1e-06 Score=79.63 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=53.6
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------ 299 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------ 299 (327)
+|+++.+++.|++|++.+++. ++++. .+|.. +.+. ..+ +.++||+|++|..-.
T Consensus 70 VD~s~~~i~~a~~~~~~~~~~--~v~~~--~~d~~--------~~l~--------~~~-~~~~~D~V~~~~~~p~~~~~~ 128 (202)
T PRK00121 70 IEVHEPGVGKALKKIEEEGLT--NLRLL--CGDAV--------EVLL--------DMF-PDGSLDRIYLNFPDPWPKKRH 128 (202)
T ss_pred EEechHHHHHHHHHHHHcCCC--CEEEE--ecCHH--------HHHH--------HHc-CccccceEEEECCCCCCCccc
Confidence 999999999999999999874 46664 34431 1110 001 256799999985321
Q ss_pred -----HHHHHHHHHhhccCCCcEEEEe
Q 041970 300 -----PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 300 -----vL~~L~p~i~~~LkpGG~LIlS 321 (327)
....++..+.+.|||||+|+++
T Consensus 129 ~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 129 HKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred cccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 1456789999999999999886
No 65
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.37 E-value=1.4e-06 Score=79.10 Aligned_cols=76 Identities=12% Similarity=0.245 Sum_probs=56.8
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLL 302 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~ 302 (327)
+|+++.+++.|++|++.+|+. +++++. .+|.. . ... .++||+|+++-..+ ...
T Consensus 29 id~s~~~~~~a~~~~~~~gl~-~~i~~~--~~d~~--------~-----------~~~--~~~fD~I~~~~~l~~~~~~~ 84 (224)
T smart00828 29 YTISPEQAEVGRERIRALGLQ-GRIRIF--YRDSA--------K-----------DPF--PDTYDLVFGFEVIHHIKDKM 84 (224)
T ss_pred EECCHHHHHHHHHHHHhcCCC-cceEEE--ecccc--------c-----------CCC--CCCCCEeehHHHHHhCCCHH
Confidence 899999999999999999887 567764 24431 0 011 35899999864332 245
Q ss_pred HHHHHHhhccCCCcEEEEeeccC
Q 041970 303 QLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 303 ~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
.++..+.++|+|||+++++.+..
T Consensus 85 ~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 85 DLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred HHHHHHHHHcCCCCEEEEEEccc
Confidence 78889999999999999998753
No 66
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.36 E-value=2.7e-06 Score=80.12 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=51.8
Q ss_pred ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---H
Q 041970 226 VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---P 300 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---v 300 (327)
+|+++.+++.|++++.. ++.. +++++. .+|.. ++ ++ +++.||+|+++...+ .
T Consensus 104 vD~S~~ml~~A~~r~~~~~~~~~-~~i~~~--~~d~~---------~l----------p~-~~~sfD~V~~~~~l~~~~d 160 (261)
T PLN02233 104 LDFSSEQLAVAASRQELKAKSCY-KNIEWI--EGDAT---------DL----------PF-DDCYFDAITMGYGLRNVVD 160 (261)
T ss_pred EECCHHHHHHHHHHhhhhhhccC-CCeEEE--Ecccc---------cC----------CC-CCCCEeEEEEecccccCCC
Confidence 99999999999987642 2221 345554 34431 11 12 256899999986432 3
Q ss_pred HHHHHHHHhhccCCCcEEEEeecc
Q 041970 301 LLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 301 L~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
...++.++.+.|||||++++.-+-
T Consensus 161 ~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 161 RLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred HHHHHHHHHHHcCcCcEEEEEECC
Confidence 456789999999999999887553
No 67
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.3e-06 Score=80.26 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=65.7
Q ss_pred HHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970 205 LCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE 266 (327)
Q Consensus 205 lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g 266 (327)
+++++|+ +++|++||+||| +|+++.-++.|++|++..|+. + +.+. ++|..
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-n-V~v~--~gDG~------ 130 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-N-VTVR--HGDGS------ 130 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-c-eEEE--ECCcc------
Confidence 3444554 678999999999 999999999999999999986 2 6554 57752
Q ss_pred cccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 267 RVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
..+++..+||.|+.+--+..+ -+.+.+.||+||+++.
T Consensus 131 --------------~G~~~~aPyD~I~Vtaaa~~v---P~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 131 --------------KGWPEEAPYDRIIVTAAAPEV---PEALLDQLKPGGRLVI 167 (209)
T ss_pred --------------cCCCCCCCcCEEEEeeccCCC---CHHHHHhcccCCEEEE
Confidence 123346899999988665543 2456778999999875
No 68
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.34 E-value=1.4e-06 Score=81.10 Aligned_cols=84 Identities=19% Similarity=0.284 Sum_probs=58.9
Q ss_pred HHHHHHhhh-cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970 206 CLLLLRSLI-KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM 264 (327)
Q Consensus 206 cLe~Le~~~-~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~ 264 (327)
...+++.+. .++.+|||+|| +|+++.+++.|+++ ++ ++. .+|..
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~-----~~~--~~d~~---- 82 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GV-----DAR--TGDVR---- 82 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CC-----cEE--EcChh----
Confidence 334455442 46789999999 99999999999763 23 232 24431
Q ss_pred cccccchhhhcccccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEEEe
Q 041970 265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LIlS 321 (327)
.+...++||+|++|...+.+ ..++..+.+.|||||++++.
T Consensus 83 -----------------~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 83 -----------------DWKPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -----------------hCCCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 11124689999999765433 56788999999999999885
No 69
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.33 E-value=4.1e-06 Score=75.06 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=60.8
Q ss_pred cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970 215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274 (327)
Q Consensus 215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~ 274 (327)
.++.+|||+|| +|+||.+++.|++|++.+++. ++++. .+|.. +..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~--~~d~~---------~~~-- 103 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVI--EGSAP---------ECL-- 103 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEE--ECchH---------HHH--
Confidence 47789999999 999999999999999999874 46654 34431 000
Q ss_pred cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970 275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
..+ ...+|.|+.... ..+..+++.+.++|+|||++++.-.
T Consensus 104 ------~~~--~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 104 ------AQL--APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ------hhC--CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 011 224566665432 3457788999999999999988753
No 70
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.31 E-value=3.5e-06 Score=84.75 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 200 HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 200 H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
-+..+++..+|. ..+|++|||+|| +|+++.+++.+++|++.+|+. +++. .+|.
T Consensus 230 d~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~---~~~~--~~D~ 302 (427)
T PRK10901 230 DAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK---ATVI--VGDA 302 (427)
T ss_pred CHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEE--EcCc
Confidence 345566666764 467899999999 999999999999999999975 3443 3554
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP 314 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp 314 (327)
. +. ......++||.|++|..- .....++..+.+.|||
T Consensus 303 ~---------~~---------~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp 364 (427)
T PRK10901 303 R---------DP---------AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP 364 (427)
T ss_pred c---------cc---------hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 00 001124579999988741 1234678889999999
Q ss_pred CcEEEEee
Q 041970 315 GAVVGISG 322 (327)
Q Consensus 315 GG~LIlSG 322 (327)
||++++|-
T Consensus 365 GG~lvyst 372 (427)
T PRK10901 365 GGTLLYAT 372 (427)
T ss_pred CCEEEEEe
Confidence 99999875
No 71
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.31 E-value=3.6e-06 Score=75.87 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=74.6
Q ss_pred CCCchhhHHHHHHHHHhhhc---CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970 196 GTGEHATTKLCLLLLRSLIK---GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH 253 (327)
Q Consensus 196 GTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~ 253 (327)
|.++.||+....+.+-..+. .|.+|||++| ||+|+.|++.+++|++.|++. +++++.
T Consensus 26 ~~~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~ 104 (189)
T TIGR00095 26 GGSTRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVV 104 (189)
T ss_pred CCCCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEE
Confidence 45689999999998877653 6889999999 999999999999999999986 456654
Q ss_pred ecCCCCCCCCccccccchhhhcccccccCCC-CCCCeeEEEEcCCh--HHHHHHHHHH--hhccCCCcEEEEe
Q 041970 254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGIS-ETEEYDVVIANILL--NPLLQLADHI--VSYAKPGAVVGIS 321 (327)
Q Consensus 254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~-~~~~fDlVvANIla--~vL~~L~p~i--~~~LkpGG~LIlS 321 (327)
.+|+. +.+. ... ....||+|+.++.. .....++..+ ..+|+++|.+++-
T Consensus 105 --~~D~~---------~~l~--------~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 105 --RNSAL---------RALK--------FLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred --ehhHH---------HHHH--------HhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 45542 1110 011 12248999999864 2233344443 3468999988763
No 72
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.31 E-value=2.8e-06 Score=78.83 Aligned_cols=88 Identities=20% Similarity=0.307 Sum_probs=61.4
Q ss_pred HHHHHHHhh-hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCC
Q 041970 205 LCLLLLRSL-IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSS 263 (327)
Q Consensus 205 lcLe~Le~~-~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~ 263 (327)
...++++.+ ..++++|||+|| +|+++.+++.|+++.. ++.+. .+|..
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~--~~d~~--- 86 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFV--EADIA--- 86 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEE--ECchh---
Confidence 344445443 356789999999 9999999999998741 23342 24431
Q ss_pred ccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970 264 MNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 264 ~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG 322 (327)
......+||+|++|...+. ...++..+.+.|||||.++++.
T Consensus 87 ------------------~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 87 ------------------SWQPPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ------------------ccCCCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 0112458999999976543 3568899999999999998863
No 73
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.29 E-value=4.3e-06 Score=81.56 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=71.8
Q ss_pred EccCcccCCCchhhHH-HHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCC
Q 041970 189 LNPGLAFGTGEHATTK-LCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIG 246 (327)
Q Consensus 189 idPG~AFGTG~H~TT~-lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~ 246 (327)
+..|+.|.+...|... ..+++++ ++++++|||+|| +|+++.+++.|++|++.+|++
T Consensus 54 ~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~ 131 (322)
T PRK13943 54 YDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE 131 (322)
T ss_pred cCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 4677778777777542 3334332 467899999999 899999999999999999975
Q ss_pred CCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 247 PKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 247 ~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
++.+. .+|.. + .....++||+|+++.-... +...+.+.|+|||++++
T Consensus 132 --nV~~i--~gD~~---------~-----------~~~~~~~fD~Ii~~~g~~~---ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 132 --NVIFV--CGDGY---------Y-----------GVPEFAPYDVIFVTVGVDE---VPETWFTQLKEGGRVIV 178 (322)
T ss_pred --cEEEE--eCChh---------h-----------cccccCCccEEEECCchHH---hHHHHHHhcCCCCEEEE
Confidence 45553 45541 0 1112357999998754332 23456789999999876
No 74
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.27 E-value=6.6e-06 Score=82.69 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=75.5
Q ss_pred cCCC----chhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcE
Q 041970 195 FGTG----EHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKM 250 (327)
Q Consensus 195 FGTG----~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v 250 (327)
|..| .-+.++++..+|. ..+|++|||+|| +|+++.+++.+++|++.+|+. .++
T Consensus 215 ~~~G~~~~Qd~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v 291 (426)
T TIGR00563 215 FEEGWVTVQDASAQWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKA 291 (426)
T ss_pred hhCCeEEEECHHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEE
Confidence 5556 4577888888886 567899999999 999999999999999999986 333
Q ss_pred EEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHH
Q 041970 251 KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLA 305 (327)
Q Consensus 251 ~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~ 305 (327)
.+ ..+|.. .. ......++||.|+.+..- .....++
T Consensus 292 ~~--~~~d~~---------~~---------~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL 351 (426)
T TIGR00563 292 ET--KDGDGR---------GP---------SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEIL 351 (426)
T ss_pred EE--eccccc---------cc---------cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHH
Confidence 32 234431 00 001124679999987420 1235688
Q ss_pred HHHhhccCCCcEEEEee
Q 041970 306 DHIVSYAKPGAVVGISG 322 (327)
Q Consensus 306 p~i~~~LkpGG~LIlSG 322 (327)
..+.+.|||||+|+.|-
T Consensus 352 ~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 352 DAIWPLLKTGGTLVYAT 368 (426)
T ss_pred HHHHHhcCCCcEEEEEe
Confidence 88999999999999873
No 75
>PRK04457 spermidine synthase; Provisional
Probab=98.27 E-value=3.1e-06 Score=80.04 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 200 HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 200 H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
++-|+..+..+... .++++|||+|| ||+||.+++.|++++..++.. .+++++ .+|.
T Consensus 51 ~~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~--~~Da 126 (262)
T PRK04457 51 LAYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVI--EADG 126 (262)
T ss_pred CHHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEE--ECCH
Confidence 45677666555322 35679999999 999999999999998877653 567775 3554
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-------HHHHHHHHhhccCCCcEEEE
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-------L~~L~p~i~~~LkpGG~LIl 320 (327)
. +.+. . ..++||+|+.|..... ..+++..+.++|+|||++++
T Consensus 127 ~---------~~l~--------~--~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 127 A---------EYIA--------V--HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred H---------HHHH--------h--CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 1 1111 1 1458999999864321 25788999999999999987
No 76
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.27 E-value=7.3e-06 Score=79.19 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=76.3
Q ss_pred ceeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970 184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN 243 (327)
...+.+.|+..|-+....+-++. +.+.+++ .++.+|||+|| +|+++.|++.|++|++.|
T Consensus 140 ~~~~~~~~~sF~Q~n~~~~~~l~-~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~ 218 (315)
T PRK03522 140 GVPLFIRPQSFFQTNPAVAAQLY-ATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAEL 218 (315)
T ss_pred CEEEEECCCeeeecCHHHHHHHH-HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 35688999888887665554433 3333333 25789999999 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH-HHHHHHHhhccCCCcEEEEee
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL-LQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL-~~L~p~i~~~LkpGG~LIlSG 322 (327)
++. ++++. .+|+. +... . ..++||+|+.|+...-+ ..+...+ ..++|++.+++|-
T Consensus 219 ~l~--~v~~~--~~D~~---------~~~~--------~--~~~~~D~Vv~dPPr~G~~~~~~~~l-~~~~~~~ivyvsc 274 (315)
T PRK03522 219 GLT--NVQFQ--ALDST---------QFAT--------A--QGEVPDLVLVNPPRRGIGKELCDYL-SQMAPRFILYSSC 274 (315)
T ss_pred CCC--ceEEE--EcCHH---------HHHH--------h--cCCCCeEEEECCCCCCccHHHHHHH-HHcCCCeEEEEEC
Confidence 984 46664 35541 1110 0 13479999999875432 2333333 3367888888763
No 77
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.26 E-value=8.9e-06 Score=80.60 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=76.7
Q ss_pred ceeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970 184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN 243 (327)
...+.+.|+-.|=| .+......++.+.+++ .++.+|||+|| ||+|+.|++.|++|++.|
T Consensus 200 g~~~~~~~~~F~Q~-n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~ 278 (374)
T TIGR02085 200 DVPLVIRPQSFFQT-NPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQML 278 (374)
T ss_pred CEEEEECCCccccC-CHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHc
Confidence 35688999876554 3444444445555543 35789999999 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-HHHHHHHHhhccCCCcEEEEe
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-L~~L~p~i~~~LkpGG~LIlS 321 (327)
+++ ++++. .+|.. +... .. ..+||+|+.|+...- ...++..+. .++|++.+++|
T Consensus 279 ~~~--~~~~~--~~d~~---------~~~~--------~~--~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 279 GLD--NLSFA--ALDSA---------KFAT--------AQ--MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC--cEEEE--ECCHH---------HHHH--------hc--CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 985 46664 34531 1110 01 246999999997643 334444444 47899998887
No 78
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.25 E-value=3.7e-06 Score=77.85 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=57.5
Q ss_pred CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970 216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS 277 (327)
Q Consensus 216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~ 277 (327)
++.+|||+|| +|+++.+++.|++|.... .+. .+|.. .+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~-------~~~--~~d~~---------~~------ 97 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAAD-------HYL--AGDIE---------SL------ 97 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCC-------CEE--EcCcc---------cC------
Confidence 4578999999 999999999999875311 121 23431 10
Q ss_pred ccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970 278 HKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 278 ~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.+ ..++||+|++|...+ .+..++..+.+.|+|||.++++.+.
T Consensus 98 ----~~-~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 98 ----PL-ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ----cC-CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 11 256899999997643 3456788999999999999999754
No 79
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.24 E-value=9.9e-06 Score=73.60 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=67.1
Q ss_pred chhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970 199 EHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF 260 (327)
Q Consensus 199 ~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~ 260 (327)
..+..+..+++|.+...++++|||+|| +|+++.+++.|++++..++.. +++.+. .+|..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~--~~d~~ 114 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVA-GNVEFE--VNDLL 114 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEE--ECChh
Confidence 344555566677642346789999999 999999999999999888764 356654 34431
Q ss_pred CCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEe
Q 041970 261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.. .++||+|+++-.. ..+..++..+.+.+++++.+.++
T Consensus 115 ---------------------~~--~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 115 ---------------------SL--CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ---------------------hC--CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 11 3679999986332 23455677788888877776654
No 80
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.22 E-value=6.7e-06 Score=77.58 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=63.2
Q ss_pred hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970 214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV 272 (327)
Q Consensus 214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~ 272 (327)
.++|++|||+|| +|+++.+++.+++|++++|+. .+.+. ..|.. .+.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~~~--~~D~~---------~~~ 135 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL--NVAVT--NFDGR---------VFG 135 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEe--cCCHH---------Hhh
Confidence 467889999999 999999999999999999985 35553 34431 000
Q ss_pred hhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCCCcEEEEee
Q 041970 273 EYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
. ..++||.|+.|.. +....+++....++|||||+|+.|.
T Consensus 136 ---------~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 136 ---------A--AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred ---------h--hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0 1346999999853 1133568888999999999999885
No 81
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.22 E-value=6.5e-06 Score=83.12 Aligned_cols=98 Identities=19% Similarity=0.294 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970 200 HATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR 258 (327)
Q Consensus 200 H~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d 258 (327)
.++.++...++. .++|++|||+|| +|+++.+++.+++|++++|+. + +++. .+|
T Consensus 236 d~~s~lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~-v~~~--~~D 309 (444)
T PRK14902 236 DESSMLVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-N-IETK--ALD 309 (444)
T ss_pred ChHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-e-EEEE--eCC
Confidence 455666666664 467889999999 999999999999999999986 3 6654 455
Q ss_pred CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccC
Q 041970 259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAK 313 (327)
Q Consensus 259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lk 313 (327)
.. ++. ..+ .++||+|++|..- .....++..+.++||
T Consensus 310 ~~---------~~~--------~~~--~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk 370 (444)
T PRK14902 310 AR---------KVH--------EKF--AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK 370 (444)
T ss_pred cc---------ccc--------chh--cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 42 110 011 2579999999641 112457888999999
Q ss_pred CCcEEEEee
Q 041970 314 PGAVVGISG 322 (327)
Q Consensus 314 pGG~LIlSG 322 (327)
|||+|+.|.
T Consensus 371 pGG~lvyst 379 (444)
T PRK14902 371 KGGILVYST 379 (444)
T ss_pred CCCEEEEEc
Confidence 999999764
No 82
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=1.3e-05 Score=76.92 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=80.3
Q ss_pred chhhHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970 199 EHATTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD 257 (327)
Q Consensus 199 ~H~TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~ 257 (327)
..+..+.-++++.+. +++|++|||+|| +++++...+.|++-++.-|++ +++++.. .
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l--~ 129 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-DNVEVRL--Q 129 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-cccEEEe--c
Confidence 456677777777765 579999999999 999999999999999999998 6777753 1
Q ss_pred CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEeeccC
Q 041970 258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
|. +.+ .++||-||+=-..+. ....+..+.+.|+|||++++=.|..
T Consensus 130 d~---------------------rd~--~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 130 DY---------------------RDF--EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred cc---------------------ccc--ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 21 223 567999999765543 5678899999999999999988764
No 83
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.21 E-value=4.1e-06 Score=78.02 Aligned_cols=84 Identities=19% Similarity=0.320 Sum_probs=55.6
Q ss_pred hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970 214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV 272 (327)
Q Consensus 214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~ 272 (327)
.++|.+|||+|| +|+++.+++.|++.++..+.. ++++. .+|+. ++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v--~~da~---------~l- 110 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFV--QGDAE---------DL- 110 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEE--E-BTT---------B--
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEE--EcCHH---------Hh-
Confidence 467889999999 999999999999999988764 56664 45541 11
Q ss_pred hhcccccccCCCCCCCeeEEEEcC-ChH--HHHHHHHHHhhccCCCcEEEEe
Q 041970 273 EYLSSHKIRGISETEEYDVVIANI-LLN--PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~fDlVvANI-la~--vL~~L~p~i~~~LkpGG~LIlS 321 (327)
++ +++.||+|++-. +.+ ...+.+.++.+.|||||++++-
T Consensus 111 ---------p~-~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 111 ---------PF-PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp ----------S--TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------cC-CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 12 367899999754 322 2466789999999999998753
No 84
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.21 E-value=4.4e-06 Score=76.56 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
+-..|..|-+.. +.++||++|| +|+||...+.|++|++..|+. ++|++. .|++.
T Consensus 33 ~g~lL~~l~~~~-~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~--~gda~- 107 (205)
T PF01596_consen 33 TGQLLQMLVRLT-RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVI--EGDAL- 107 (205)
T ss_dssp HHHHHHHHHHHH-T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEE--ES-HH-
T ss_pred HHHHHHHHHHhc-CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEE--EeccH-
Confidence 334455555543 4579999999 999999999999999999997 789886 36642
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+.+..+ ..-...++||+|+-.--..-+......+.++|+|||.+++..++
T Consensus 108 --------~~l~~l-----~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 108 --------EVLPEL-----ANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp --------HHHHHH-----HHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred --------hhHHHH-----HhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEcccc
Confidence 221100 00011358999999998888888888999999999999998765
No 85
>PRK06922 hypothetical protein; Provisional
Probab=98.20 E-value=7.7e-06 Score=86.17 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=61.5
Q ss_pred CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
+|.+|||+|| +|+++.+++.|++|+..++. ++.+. .+|.. ++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~---~ie~I--~gDa~---------dL---- 479 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR---SWNVI--KGDAI---------NL---- 479 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---CeEEE--EcchH---------hC----
Confidence 5779999999 99999999999999876653 24442 34431 10
Q ss_pred ccccccCCCCCCCeeEEEEcCChH----------------HHHHHHHHHhhccCCCcEEEEe-ecc
Q 041970 276 SSHKIRGISETEEYDVVIANILLN----------------PLLQLADHIVSYAKPGAVVGIS-GIL 324 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~----------------vL~~L~p~i~~~LkpGG~LIlS-GIl 324 (327)
....+.++||+|++|.+.+ .+..++..+.+.|||||++++. |++
T Consensus 480 -----p~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 480 -----SSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred -----ccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 0011256899999996443 3467788999999999999986 444
No 86
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.19 E-value=9.8e-06 Score=81.96 Aligned_cols=96 Identities=26% Similarity=0.290 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
++..++..+|. ..+|++|||+|| +|+++.+++.+++|++.+|+. ++++. .+|.
T Consensus 237 ~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~--~~Da 310 (445)
T PRK14904 237 PTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIETI--EGDA 310 (445)
T ss_pred HHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEE--eCcc
Confidence 34556665554 457899999999 999999999999999999985 46654 3453
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP 314 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp 314 (327)
. .....++||+|+.+..- .....++..+.+.|||
T Consensus 311 ~---------------------~~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp 369 (445)
T PRK14904 311 R---------------------SFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP 369 (445)
T ss_pred c---------------------ccccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 11124579999987431 1234578899999999
Q ss_pred CcEEEEeec
Q 041970 315 GAVVGISGI 323 (327)
Q Consensus 315 GG~LIlSGI 323 (327)
||+++.|--
T Consensus 370 gG~lvystc 378 (445)
T PRK14904 370 GGVLVYATC 378 (445)
T ss_pred CcEEEEEeC
Confidence 999999863
No 87
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.18 E-value=1.1e-05 Score=72.86 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=53.6
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---HHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---NPLL 302 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~vL~ 302 (327)
+|+++.+++.|++|++.++.. .++.+. .+|.. +. .. ..++||+|+++-.. ....
T Consensus 82 ~D~s~~~~~~a~~~~~~~~~~-~~~~~~--~~d~~---------~~----------~~-~~~~~D~I~~~~~l~~~~~~~ 138 (239)
T PRK00216 82 LDFSEGMLAVGREKLRDLGLS-GNVEFV--QGDAE---------AL----------PF-PDNSFDAVTIAFGLRNVPDID 138 (239)
T ss_pred EeCCHHHHHHHHHhhcccccc-cCeEEE--ecccc---------cC----------CC-CCCCccEEEEecccccCCCHH
Confidence 899999999999999887664 345554 34431 00 11 24689999987432 2345
Q ss_pred HHHHHHhhccCCCcEEEEeec
Q 041970 303 QLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 303 ~L~p~i~~~LkpGG~LIlSGI 323 (327)
.++..+.+.|+|||.+++.++
T Consensus 139 ~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 139 KALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred HHHHHHHHhccCCcEEEEEEe
Confidence 678899999999999998765
No 88
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.18 E-value=4.4e-06 Score=81.48 Aligned_cols=63 Identities=30% Similarity=0.516 Sum_probs=45.5
Q ss_pred CCeeeeeee--------------------ecCCHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALN-NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
+.++||||| +|||+.|++.|++|++.| ++. +++++.. ..+. ..+.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~-~~~~---------~~i~--- 180 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRL-QKDS---------KAIF--- 180 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEE-ccch---------hhhh---
Confidence 468999999 999999999999999999 887 6777642 2221 0110
Q ss_pred ccccccCC-CCCCCeeEEEEcCCh
Q 041970 276 SSHKIRGI-SETEEYDVVIANILL 298 (327)
Q Consensus 276 ~~~~~~~~-~~~~~fDlVvANIla 298 (327)
..+ ...++||+|+||+..
T Consensus 181 -----~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 181 -----KGIIHKNERFDATLCNPPF 199 (321)
T ss_pred -----hcccccCCceEEEEeCCCC
Confidence 011 125689999999874
No 89
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.15 E-value=1.3e-05 Score=72.13 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=57.3
Q ss_pred CCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
+.+|||+|| +|+++.+++.++++... ++.+. .+|.. +.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~------~~~~~--~~d~~---------~~----- 92 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE------NVQFI--CGDAE---------KL----- 92 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC------CCeEE--ecchh---------hC-----
Confidence 468999999 99999999999887541 23332 24431 00
Q ss_pred cccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970 277 SHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.. ..++||+|++|-..+ ....++..+.+.|+|||.++++...
T Consensus 93 -----~~-~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 93 -----PL-EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred -----CC-CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 11 256899999997653 3456889999999999999998654
No 90
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.15 E-value=4.6e-06 Score=78.66 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=75.8
Q ss_pred CceEEEcCcEEEEcCCCC-----CceeEEEccCccc-CCCchhhHHHHH-HHHHhhhc-CCCeeeeeee-----------
Q 041970 165 FHPVEVTKGLWIVPEWNV-----QATNIILNPGLAF-GTGEHATTKLCL-LLLRSLIK-GGELFLDYGT----------- 225 (327)
Q Consensus 165 f~P~~vg~~l~I~P~W~~-----~~~~I~idPG~AF-GTG~H~TT~lcL-e~Le~~~~-~g~~VLDvGc----------- 225 (327)
|-.-+-| -+.+.|.|.. +...-.+.+..+| .+|++...+-.+ ++|.+++. .+.+|||+||
T Consensus 27 fd~a~~G-y~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~ 105 (272)
T PRK11088 27 FDCAKEG-YVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALAD 105 (272)
T ss_pred CccccCc-eEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHH
Confidence 4333333 3445676651 1122234444555 777765554444 66766654 4478999999
Q ss_pred ------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEE
Q 041970 226 ------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVI 293 (327)
Q Consensus 226 ------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVv 293 (327)
+|+++.+++.|+++. .+ +.+. .+|.. ++ ++ .++.||+|+
T Consensus 106 ~~~~~~~~~v~giD~s~~~l~~A~~~~--~~-----~~~~--~~d~~---------~l----------p~-~~~sfD~I~ 156 (272)
T PRK11088 106 ALPEITTMQLFGLDISKVAIKYAAKRY--PQ-----VTFC--VASSH---------RL----------PF-ADQSLDAII 156 (272)
T ss_pred hcccccCCeEEEECCCHHHHHHHHHhC--CC-----CeEE--Eeecc---------cC----------CC-cCCceeEEE
Confidence 799999999998763 11 3332 23321 10 12 256899999
Q ss_pred EcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970 294 ANILLNPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 294 ANIla~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
++... ....++.+.|||||+|++..
T Consensus 157 ~~~~~----~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 157 RIYAP----CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred EecCC----CCHHHHHhhccCCCEEEEEe
Confidence 87642 23578899999999999763
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.15 E-value=1.9e-05 Score=75.52 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=63.1
Q ss_pred cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970 215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274 (327)
Q Consensus 215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~ 274 (327)
.++++|||+|| +|. |.+++.|++|++.+|+. +++++. .+|.+. +
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~--~~d~~~-------~----- 211 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGI--AVDIYK-------E----- 211 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEE--ecCccC-------C-----
Confidence 56789999999 887 78999999999999987 677764 466530 0
Q ss_pred cccccccCCCCCCCeeEEE-EcCCh----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 275 LSSHKIRGISETEEYDVVI-ANILL----NPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 275 ~~~~~~~~~~~~~~fDlVv-ANIla----~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
. ...+|+|+ +|++. +....++..+.+.|+|||++++..+.
T Consensus 212 -------~---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 212 -------S---YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred -------C---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 1 12479865 66553 33467899999999999999887653
No 92
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.14 E-value=1e-05 Score=73.56 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=58.0
Q ss_pred CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970 216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS 277 (327)
Q Consensus 216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~ 277 (327)
++.++||+|| +|+++.|++.+++-++.++++ ++.. ..|+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~---i~~~--~~Dl~----------------- 87 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD---IRTR--VADLN----------------- 87 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T---EEEE--E-BGC-----------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce---eEEE--Eecch-----------------
Confidence 3569999999 999999999999999999886 4443 23331
Q ss_pred ccccCCCCCCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEEEeec
Q 041970 278 HKIRGISETEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 278 ~~~~~~~~~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
.....++||+|++-.. .+.+..++..+.+.++|||++++-..
T Consensus 88 ----~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 88 ----DFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp ----CBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----hccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 1112468999998533 34556788899999999999876443
No 93
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.13 E-value=1.5e-05 Score=80.31 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
+..++...+|. .++|++|||+|| +|+++.+++.+++|++++|+. .+++. .+|.
T Consensus 239 ~~s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v~~~--~~D~ 312 (434)
T PRK14901 239 RSAQLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK--SIKIL--AADS 312 (434)
T ss_pred HHHHHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC--eEEEE--eCCh
Confidence 34555555553 467899999999 899999999999999999986 36653 3453
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP 314 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp 314 (327)
. .+.. .... ..++||.|+.|..- ....+++..+.+.|||
T Consensus 313 ~---------~~~~------~~~~-~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp 376 (434)
T PRK14901 313 R---------NLLE------LKPQ-WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP 376 (434)
T ss_pred h---------hccc------cccc-ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 0000 0000 13579999997530 1245788899999999
Q ss_pred CcEEEEee
Q 041970 315 GAVVGISG 322 (327)
Q Consensus 315 GG~LIlSG 322 (327)
||+|+.|-
T Consensus 377 gG~lvyst 384 (434)
T PRK14901 377 GGTLVYAT 384 (434)
T ss_pred CCEEEEEe
Confidence 99999774
No 94
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.12 E-value=1.2e-05 Score=78.94 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhh--hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970 200 HATTKLCLLLLRSL--IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD 257 (327)
Q Consensus 200 H~TT~lcLe~Le~~--~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~ 257 (327)
|.+..++-..++.. ..++.+|||+|| +|+++.+++.|++|+..+++ ++. .+
T Consensus 95 ~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i-----~~i--~g 167 (340)
T PLN02490 95 HWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-----KII--EG 167 (340)
T ss_pred cchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCC-----eEE--ec
Confidence 44556665566544 246789999999 99999999999998765443 332 34
Q ss_pred CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970 258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI 323 (327)
|.. ++ .+ +.+.||+|++|-..+. ...++.++.+.|||||++++.+.
T Consensus 168 D~e---------~l----------p~-~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 168 DAE---------DL----------PF-PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred cHH---------hC----------CC-CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 431 10 11 2568999999854322 24578899999999999988764
No 95
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.09 E-value=2e-05 Score=71.32 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=69.9
Q ss_pred hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970 214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE 273 (327)
Q Consensus 214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~ 273 (327)
+++|++++|||| +|-|+.|++..++|+++.|++ ++++. .|++. +.+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~--n~~vv--~g~Ap---------~~L- 97 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD--NLEVV--EGDAP---------EAL- 97 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC--cEEEE--eccch---------Hhh-
Confidence 578999999999 999999999999999999975 56653 56652 111
Q ss_pred hcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 274 YLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 274 ~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.....+|.|+-+-- ..+..++..+..+|||||+++.--|.
T Consensus 98 ----------~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 98 ----------PDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred ----------cCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 11226999999987 88888999999999999999987664
No 96
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.09 E-value=6.3e-06 Score=63.29 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=47.8
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---HHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---NPLL 302 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~vL~ 302 (327)
+|+++.+++.|+++...+++. +. .++.. ++ ++ +++.||+|+++-.. ....
T Consensus 25 ~D~~~~~~~~~~~~~~~~~~~-----~~--~~d~~---------~l----------~~-~~~sfD~v~~~~~~~~~~~~~ 77 (95)
T PF08241_consen 25 IDISEEMLEQARKRLKNEGVS-----FR--QGDAE---------DL----------PF-PDNSFDVVFSNSVLHHLEDPE 77 (95)
T ss_dssp EES-HHHHHHHHHHTTTSTEE-----EE--ESBTT---------SS----------SS--TT-EEEEEEESHGGGSSHHH
T ss_pred EeCCHHHHHHHHhcccccCch-----he--eehHH---------hC----------cc-ccccccccccccceeeccCHH
Confidence 899999999999987665542 32 23331 11 12 36799999999654 3556
Q ss_pred HHHHHHhhccCCCcEEEE
Q 041970 303 QLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 303 ~L~p~i~~~LkpGG~LIl 320 (327)
.++.++.+.|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 788999999999999985
No 97
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.07 E-value=1.6e-05 Score=77.31 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=56.4
Q ss_pred cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
..|++|||||| +|.++.++..++...+..+.. .++.+. .++. .+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~--~~d~---------e~----- 183 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLL--PLGI---------EQ----- 183 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEE--eCCH---------HH-----
Confidence 36789999999 888888876554433332222 345553 2332 11
Q ss_pred ccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970 276 SSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+...++||+|+++-... -...++..+.+.|+|||.++++.+.
T Consensus 184 -------lp~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 184 -------LPALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred -------CCCcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 11156899999974332 2456889999999999999998653
No 98
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.06 E-value=2.1e-05 Score=79.42 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970 202 TTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF 260 (327)
Q Consensus 202 TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~ 260 (327)
..+++..++. .++|.+|||+|| +|+++.+++.+++|+++.|+. .+++. .+|..
T Consensus 225 ~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v~~~--~~Da~ 298 (431)
T PRK14903 225 SSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS--SIEIK--IADAE 298 (431)
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEE--ECchh
Confidence 3444444443 467899999999 999999999999999999985 35553 34431
Q ss_pred CCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCCC
Q 041970 261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKPG 315 (327)
Q Consensus 261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~LkpG 315 (327)
.+ ... ..++||.|++|..- ....+++..+.+.||||
T Consensus 299 ---------~l---------~~~-~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 299 ---------RL---------TEY-VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred ---------hh---------hhh-hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11 001 14679999998532 12356788999999999
Q ss_pred cEEEEee
Q 041970 316 AVVGISG 322 (327)
Q Consensus 316 G~LIlSG 322 (327)
|+++.|-
T Consensus 360 G~LvYsT 366 (431)
T PRK14903 360 GILLYST 366 (431)
T ss_pred CEEEEEE
Confidence 9999885
No 99
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.05 E-value=2.5e-05 Score=71.32 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 200 HATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 200 H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
|+-+-.-++++.... .++.+|||+|| +|+++.+++.|++|+..++.. +++. ..+.
T Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~~~--~~~~ 104 (233)
T PRK05134 30 HRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLK---IDYR--QTTA 104 (233)
T ss_pred HHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCc---eEEE--ecCH
Confidence 555555556666553 34667888887 899999999999999887753 3442 2232
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
.+.. . ...++||+|+++-... -...++..+.+.|+|||+++++.+
T Consensus 105 ---------~~~~---------~-~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 105 ---------EELA---------A-EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ---------HHhh---------h-hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 1110 0 0246899999864322 234577889999999999998864
No 100
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.05 E-value=3.5e-05 Score=72.63 Aligned_cols=101 Identities=14% Similarity=0.275 Sum_probs=73.7
Q ss_pred HHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970 207 LLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN 265 (327)
Q Consensus 207 Le~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~ 265 (327)
|..|-+.. +.++||++|| +|+|+...+.|++|.+..|+. ++|++. .|++.
T Consensus 71 L~~l~~~~-~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~--~G~a~----- 141 (247)
T PLN02589 71 LNMLLKLI-NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFR--EGPAL----- 141 (247)
T ss_pred HHHHHHHh-CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEE--eccHH-----
Confidence 33444333 3568888888 999999999999999999997 788875 46652
Q ss_pred ccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+.+..+. ......++||+|+...-..-.....+.+.++|+|||.+++-.++
T Consensus 142 ----e~L~~l~----~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 142 ----PVLDQMI----EDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ----HHHHHHH----hccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 2221100 00001368999999988888888888889999999999988775
No 101
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.02 E-value=2.9e-05 Score=77.99 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=76.7
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg 244 (327)
..+.+.|+. |---..+.++..++.+.+++ .++++|||+|| +|+++.|++.|++|++.|+
T Consensus 260 ~~~~~~~~~-F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~ 338 (431)
T TIGR00479 260 LSFSLSARD-FFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNG 338 (431)
T ss_pred EEEEECCCc-eeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhC
Confidence 467788875 44344555665666666554 45689999999 9999999999999999999
Q ss_pred CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEEEe
Q 041970 245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+. ++++. .+|.. +.+.. ... ....||+|+.|+... ....++..+. .++|++.+++|
T Consensus 339 ~~--nv~~~--~~d~~---------~~l~~------~~~-~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 339 IA--NVEFL--AGTLE---------TVLPK------QPW-AGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred CC--ceEEE--eCCHH---------HHHHH------HHh-cCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 85 46664 45541 11100 001 134699999998742 2344444444 37899888776
No 102
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.02 E-value=1.5e-06 Score=68.82 Aligned_cols=71 Identities=24% Similarity=0.373 Sum_probs=39.7
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLL 302 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~ 302 (327)
+|+++.+++.|+++...++.. ....+.....+.. .....++||+|+++-..+ .+.
T Consensus 26 ~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~---------------------~~~~~~~fD~V~~~~vl~~l~~~~ 83 (99)
T PF08242_consen 26 VDISPSMLERARERLAELGND-NFERLRFDVLDLF---------------------DYDPPESFDLVVASNVLHHLEDIE 83 (99)
T ss_dssp EESSSSTTSTTCCCHHHCT----EEEEE--SSS------------------------CCC----SEEEEE-TTS--S-HH
T ss_pred EECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChh---------------------hcccccccceehhhhhHhhhhhHH
Confidence 999999999999888877643 1112211111110 011135899999986544 345
Q ss_pred HHHHHHhhccCCCcEE
Q 041970 303 QLADHIVSYAKPGAVV 318 (327)
Q Consensus 303 ~L~p~i~~~LkpGG~L 318 (327)
.++..+.++|||||+|
T Consensus 84 ~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 84 AVLRNIYRLLKPGGIL 99 (99)
T ss_dssp HHHHHHTTT-TSS-EE
T ss_pred HHHHHHHHHcCCCCCC
Confidence 7788999999999986
No 103
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.01 E-value=7.7e-06 Score=74.76 Aligned_cols=106 Identities=21% Similarity=0.379 Sum_probs=67.0
Q ss_pred CceeEEEccC-cccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHH
Q 041970 183 QATNIILNPG-LAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNA 240 (327)
Q Consensus 183 ~~~~I~idPG-~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa 240 (327)
......+|+. .-|-+|. ++=.| |.+.+++|++|+|+.| +|++|.|++..++|+
T Consensus 71 ~G~~f~~D~~kvyfs~rl~~Er~R-----i~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 71 NGIRFKVDLSKVYFSPRLSTERRR-----IANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp TTEEEEEETTTS---GGGHHHHHH-----HHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHH
T ss_pred CCEEEEEccceEEEccccHHHHHH-----HHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHH
Confidence 4466778875 4467664 23332 3344778999999999 999999999999999
Q ss_pred HhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEE
Q 041970 241 ALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVV 318 (327)
Q Consensus 241 ~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~L 318 (327)
++|++. +++.+. .+|.. + +.....||-|++|.+...+ .+++.+.+++++||.+
T Consensus 146 ~lNkv~-~~i~~~--~~D~~---------~------------~~~~~~~drvim~lp~~~~-~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 146 RLNKVE-NRIEVI--NGDAR---------E------------FLPEGKFDRVIMNLPESSL-EFLDAALSLLKEGGII 198 (200)
T ss_dssp HHTT-T-TTEEEE--ES-GG---------G---------------TT-EEEEEE--TSSGG-GGHHHHHHHEEEEEEE
T ss_pred HHcCCC-CeEEEE--cCCHH---------H------------hcCccccCEEEECChHHHH-HHHHHHHHHhcCCcEE
Confidence 999998 677654 45541 1 2125789999999986655 4677788889998865
No 104
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.00 E-value=3.4e-05 Score=72.42 Aligned_cols=104 Identities=17% Similarity=0.289 Sum_probs=71.6
Q ss_pred cccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970 193 LAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKL 252 (327)
Q Consensus 193 ~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v 252 (327)
|.|| .|-+=+--+..+... .+|.+|||||| +|+++.+++.|++-+..-+.. + +++
T Consensus 31 ~S~g--~~~~Wr~~~i~~~~~-~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~-i~f 105 (238)
T COG2226 31 MSFG--LHRLWRRALISLLGI-KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-N-VEF 105 (238)
T ss_pred ccCc--chHHHHHHHHHhhCC-CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-c-eEE
Confidence 4454 565544433333221 27899999999 999999999999998876665 2 665
Q ss_pred EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEEEeec
Q 041970 253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
. .+|+. ++ ++ ++..||+|.+.--. .-+...+.++.++|||||++++--+
T Consensus 106 v--~~dAe---------~L----------Pf-~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 106 V--VGDAE---------NL----------PF-PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred E--Eechh---------hC----------CC-CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 3 46652 11 23 47899999887532 2345678899999999998876443
No 105
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.00 E-value=1.1e-05 Score=68.30 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=32.2
Q ss_pred CCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeecc
Q 041970 286 TEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 286 ~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.++||+|+||-..+. ...++..+.++|||||+++++-..
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 679999999965433 467889999999999999998654
No 106
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.00 E-value=1.6e-05 Score=75.21 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=28.9
Q ss_pred CCCeeEEEE-cCCh----HHHHHHHHHHhhccCCCcEEEEe
Q 041970 286 TEEYDVVIA-NILL----NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 286 ~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.++||+|+| |.+. ....+++..+.+.|+|||+|++.
T Consensus 201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 578999999 5432 34557899999999999999974
No 107
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.99 E-value=2.4e-05 Score=70.34 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=53.8
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------ 299 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------ 299 (327)
+|+++.+++.|++|++.+++. ++++. .+|+. ++.. ...+.+.+|.|+.|..-.
T Consensus 46 vD~~~~~l~~a~~~~~~~~l~--ni~~i--~~d~~---------~~~~--------~~~~~~~~d~v~~~~pdpw~k~~h 104 (194)
T TIGR00091 46 IEIHTPIVLAANNKANKLGLK--NLHVL--CGDAN---------ELLD--------KFFPDGSLSKVFLNFPDPWPKKRH 104 (194)
T ss_pred EEeeHHHHHHHHHHHHHhCCC--CEEEE--ccCHH---------HHHH--------hhCCCCceeEEEEECCCcCCCCCc
Confidence 899999999999999999885 46653 45541 1110 111245799999996321
Q ss_pred -----HHHHHHHHHhhccCCCcEEEEe
Q 041970 300 -----PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 300 -----vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+...++..+.+.|||||.|+++
T Consensus 105 ~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 105 NKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred cccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 1246788999999999999875
No 108
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.98 E-value=1.7e-05 Score=63.30 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=47.5
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC------hH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL------LN 299 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl------a~ 299 (327)
+|+|+.+++.|+++.+..+.. +++. ++|.. ++. . ..++||+|+++-. .+
T Consensus 30 vD~s~~~l~~~~~~~~~~~~~---~~~~--~~D~~---------~l~----------~-~~~~~D~v~~~~~~~~~~~~~ 84 (101)
T PF13649_consen 30 VDISPEMLELAKKRFSEDGPK---VRFV--QADAR---------DLP----------F-SDGKFDLVVCSGLSLHHLSPE 84 (101)
T ss_dssp EES-HHHHHHHHHHSHHTTTT---SEEE--ESCTT---------CHH----------H-HSSSEEEEEE-TTGGGGSSHH
T ss_pred EECCHHHHHHHHHhchhcCCc---eEEE--ECCHh---------HCc----------c-cCCCeeEEEEcCCccCCCCHH
Confidence 899999999999999876663 4553 35542 111 0 2569999999422 35
Q ss_pred HHHHHHHHHhhccCCCc
Q 041970 300 PLLQLADHIVSYAKPGA 316 (327)
Q Consensus 300 vL~~L~p~i~~~LkpGG 316 (327)
.+..++..+.++|+|||
T Consensus 85 ~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 85 ELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 67889999999999998
No 109
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.98 E-value=7.6e-05 Score=67.59 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 201 ATTKLCLLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 201 ~TT~lcLe~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
++...+++++..+ ..++.+|||+|| +|+++.+++.|++++..++.. +++.+. .+|.-
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~--~~d~~- 122 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLA-GNITFE--VGDLE- 122 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEE--EcCch-
Confidence 3344566677653 346789999999 999999999999999888775 456654 23320
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEE
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVV 318 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~L 318 (327)
. ..++||+|+++-.. ..+..++..+.+.+++++.+
T Consensus 123 --------------------~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 123 --------------------S--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred --------------------h--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 0 14679999987432 34456667777766544443
No 110
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.96 E-value=4.7e-05 Score=74.08 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=54.1
Q ss_pred cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
.+|++|||+|| +|.++.++..++...+.-+.. .++.+. ..+. .+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~--~~~i---------e~----- 182 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILE--PLGI---------EQ----- 182 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEE--ECCH---------HH-----
Confidence 46788999999 888888887654432221111 234432 2222 11
Q ss_pred ccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970 276 SSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
+....+||+|++|-... -....+..+++.|||||.|+++-+
T Consensus 183 -------lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 183 -------LHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -------CCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 11235799999986432 234678899999999999998754
No 111
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.95 E-value=5.7e-05 Score=67.50 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=50.4
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---HHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---NPLL 302 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~vL~ 302 (327)
+|+++.+++.+++|.. .. .++.+. .+|.. +. .. ..++||+|+++... .-..
T Consensus 70 iD~~~~~~~~~~~~~~---~~-~~i~~~--~~d~~---------~~----------~~-~~~~~D~i~~~~~~~~~~~~~ 123 (223)
T TIGR01934 70 VDFSSEMLEVAKKKSE---LP-LNIEFI--QADAE---------AL----------PF-EDNSFDAVTIAFGLRNVTDIQ 123 (223)
T ss_pred EECCHHHHHHHHHHhc---cC-CCceEE--ecchh---------cC----------CC-CCCcEEEEEEeeeeCCcccHH
Confidence 8999999999999875 21 345543 34431 10 11 24689999987532 3355
Q ss_pred HHHHHHhhccCCCcEEEEeec
Q 041970 303 QLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 303 ~L~p~i~~~LkpGG~LIlSGI 323 (327)
.++..+.+.|+|||++++.++
T Consensus 124 ~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 124 KALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 688899999999999998775
No 112
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.91 E-value=0.00013 Score=67.16 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=59.1
Q ss_pred HHHHhhh-cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC-------------CCcEEEEec
Q 041970 208 LLLRSLI-KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG-------------PKKMKLHLV 255 (327)
Q Consensus 208 e~Le~~~-~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~-------------~~~v~v~~~ 255 (327)
++++.+. .++.+|||+|| ||+++.|++.|.. .|++. ..++++.
T Consensus 25 ~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~-- 99 (213)
T TIGR03840 25 KHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIF-- 99 (213)
T ss_pred HHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEE--
Confidence 3444432 46779999999 9999999998643 22321 1234443
Q ss_pred CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.+|.+ ++ .....++||+|+.... .+.-...+..+.++|||||++++-++-
T Consensus 100 ~~D~~---------~~----------~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 100 CGDFF---------AL----------TAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred EccCC---------CC----------CcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 45553 10 0001357898887643 233456889999999999987777653
No 113
>PRK08317 hypothetical protein; Provisional
Probab=97.90 E-value=0.00012 Score=65.71 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=58.0
Q ss_pred cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970 215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE 273 (327)
Q Consensus 215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~ 273 (327)
.++++|||+|| +|+++.+++.|++|....+ .++.+. .+|.. ..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~--~~d~~---------~~-- 81 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFV--RGDAD---------GL-- 81 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEE--ecccc---------cC--
Confidence 56778999988 8999999999999843322 234543 23431 00
Q ss_pred hcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970 274 YLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 274 ~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG 322 (327)
.+ ..++||+|+++-..+. ...++..+.+.|+|||++++..
T Consensus 82 --------~~-~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 82 --------PF-PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred --------CC-CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 11 2468999999865432 3567889999999999998865
No 114
>PRK00811 spermidine synthase; Provisional
Probab=97.90 E-value=7e-05 Score=71.53 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=60.1
Q ss_pred cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC--C-CCCcEEEEecCCCCCCCCccccccch
Q 041970 215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN--I-GPKKMKLHLVPDRTFPSSMNERVDGI 271 (327)
Q Consensus 215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg--v-~~~~v~v~~~~~d~~~~~~~g~~~~l 271 (327)
..+++|||+|| ||+|+.+++.|+++....+ . +..++++. .+|.. +.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~---------~~ 143 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGI---------KF 143 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchH---------HH
Confidence 34578999999 9999999999999976422 2 33567765 35541 11
Q ss_pred hhhcccccccCCCCCCCeeEEEEcCCh-----HHH--HHHHHHHhhccCCCcEEEEe
Q 041970 272 VEYLSSHKIRGISETEEYDVVIANILL-----NPL--LQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 272 ~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL--~~L~p~i~~~LkpGG~LIlS 321 (327)
+. . ..++||+|+++... ..+ ..+...+.++|+|||.+++.
T Consensus 144 l~--------~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 144 VA--------E--TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred Hh--------h--CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 10 1 25689999998531 122 56678899999999999874
No 115
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.90 E-value=4e-05 Score=74.13 Aligned_cols=77 Identities=29% Similarity=0.420 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhcC-------CCeeeeeee--------------------ecCCHHHHHHHHHHHHhc-CCCCCcEEEEec
Q 041970 204 KLCLLLLRSLIKG-------GELFLDYGT--------------------VDIDPQVIKSAHQNAALN-NIGPKKMKLHLV 255 (327)
Q Consensus 204 ~lcLe~Le~~~~~-------g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~ 255 (327)
..-+.||++++.. .-++||||| +|||+.+++.|++|++.| ++. ++|++...
T Consensus 83 ~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~ 161 (299)
T PF05971_consen 83 LNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQ 161 (299)
T ss_dssp HHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE-
T ss_pred HHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEc
Confidence 4556778777643 347999999 999999999999999999 997 78988643
Q ss_pred CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh
Q 041970 256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL 298 (327)
Q Consensus 256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla 298 (327)
..+.. +. ..+ +...+.||+.+||+..
T Consensus 162 ~~~~~--i~----~~i-----------~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 162 KNPDN--IF----DGI-----------IQPNERFDFTMCNPPF 187 (299)
T ss_dssp -ST-S--ST----TTS-----------TT--S-EEEEEE----
T ss_pred CCccc--cc----hhh-----------hcccceeeEEecCCcc
Confidence 22210 01 111 1125689999999874
No 116
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.90 E-value=2.2e-05 Score=73.76 Aligned_cols=35 Identities=20% Similarity=0.449 Sum_probs=29.8
Q ss_pred CCCeeEEEEcCCh---------HHHHHHHHHHhhccCCCcEEEE
Q 041970 286 TEEYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 286 ~~~fDlVvANIla---------~vL~~L~p~i~~~LkpGG~LIl 320 (327)
...||+|+|=-+. +=|..++..|.++|.|||+||+
T Consensus 164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 5679999996442 5688999999999999999986
No 117
>PHA03412 putative methyltransferase; Provisional
Probab=97.88 E-value=6.4e-05 Score=70.58 Aligned_cols=120 Identities=11% Similarity=0.127 Sum_probs=67.2
Q ss_pred HhhcCceEEEcCcEEEEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHH
Q 041970 161 AQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNA 240 (327)
Q Consensus 161 Wk~~f~P~~vg~~l~I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa 240 (327)
+-+||.|..+-..+++ |... ....+|||. ||| .+.+.+..++.... -..|=++|||+.|++.|++|.
T Consensus 30 ~GqFfTP~~iAr~~~i---~~~~-~grVLDlG~--GSG-----~Lalala~~~~~~~--~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 30 LGAFFTPIGLARDFTI---DACT-SGSVVDLCA--GIG-----GLSFAMVHMMMYAK--PREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred CCccCCCHHHHHHHHH---hccC-CCEEEEccC--hHH-----HHHHHHHHhcccCC--CcEEEEEECCHHHHHHHHhhc
Confidence 3467888777654422 2211 235577774 444 23333333322111 123334999999999999985
Q ss_pred HhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------------HHHHHHH
Q 041970 241 ALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---------------NPLLQLA 305 (327)
Q Consensus 241 ~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---------------~vL~~L~ 305 (327)
.. +.+. .+|.. .....++||+||+|++. .....++
T Consensus 97 ~~-------~~~~--~~D~~---------------------~~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li 146 (241)
T PHA03412 97 PE-------ATWI--NADAL---------------------TTEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVI 146 (241)
T ss_pred cC-------CEEE--Ecchh---------------------cccccCCccEEEECCCCCCccccccCCcccccHHHHHHH
Confidence 31 3333 34542 00114589999999863 2345577
Q ss_pred HHHhhccCCCcEEEEeec
Q 041970 306 DHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 306 p~i~~~LkpGG~LIlSGI 323 (327)
....+++++|+.++=+.|
T Consensus 147 ~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 147 ERASQIARQGTFIIPQMS 164 (241)
T ss_pred HHHHHHcCCCEEEeCccc
Confidence 788887777776443443
No 118
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.86 E-value=8.2e-05 Score=67.98 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=52.3
Q ss_pred Ceeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccccc
Q 041970 218 ELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHK 279 (327)
Q Consensus 218 ~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~ 279 (327)
.++||+|| +|+++.||+.|++.++ +.+ +|++. ..++.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~--~V~~~--~~dvp------------------- 99 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLP--HVEWI--QADVP------------------- 99 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-S--SEEEE--ES-TT-------------------
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCC--CeEEE--ECcCC-------------------
Confidence 58999999 9999999999999764 333 46664 34431
Q ss_pred ccCCCCCCCeeEEEEcC----C--hHHHHHHHHHHhhccCCCcEEEEe
Q 041970 280 IRGISETEEYDVVIANI----L--LNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 280 ~~~~~~~~~fDlVvANI----l--a~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
...+.++||+||.-= + .+.+..++..+.+.|+|||.||+-
T Consensus 100 --~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 100 --EFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp --T---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred --CCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 122478999998652 2 246778889999999999999873
No 119
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.83 E-value=0.0001 Score=66.52 Aligned_cols=95 Identities=22% Similarity=0.253 Sum_probs=65.1
Q ss_pred HHHHHHhhhc------CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 206 CLLLLRSLIK------GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 206 cLe~Le~~~~------~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
-++++.+.+. .+.+|||+|| +|+++.+++.+++|+..+++. ++.+. .++..
T Consensus 29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~--~~d~~- 103 (224)
T TIGR01983 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL--KIEYR--CTSVE- 103 (224)
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--ceEEE--eCCHH-
Confidence 3355554443 3679999999 999999999999999988763 24442 23321
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
+.. ....++||+|+++-..+ ....++..+.+.|+|||.+++++.
T Consensus 104 --------~~~----------~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 104 --------DLA----------EKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred --------Hhh----------cCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 110 01136899999974322 235678889999999999998764
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.82 E-value=0.00017 Score=70.32 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=60.0
Q ss_pred CchhhHHHHHHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC---CCcEEEEec
Q 041970 198 GEHATTKLCLLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG---PKKMKLHLV 255 (327)
Q Consensus 198 G~H~TT~lcLe~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~---~~~v~v~~~ 255 (327)
|+..+.+..++++... ..+|.+|||+|| +|+++.+++.|++|++..+.. ...+++.
T Consensus 125 ~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~-- 202 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFE-- 202 (315)
T ss_pred ChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEE--
Confidence 4445556677777654 235789999999 999999999999998765321 1234443
Q ss_pred CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEE
Q 041970 256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LI 319 (327)
.+|. ..+ .++||+|+++-. .+.+..++..+.+ +.+||.+|
T Consensus 203 ~~Dl---------------------~~l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 203 ANDL---------------------ESL--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred Ecch---------------------hhc--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 2332 011 468999998732 2233445555554 45655543
No 121
>PRK04266 fibrillarin; Provisional
Probab=97.80 E-value=0.00012 Score=68.01 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=56.9
Q ss_pred hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970 214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE 273 (327)
Q Consensus 214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~ 273 (327)
+++|.+|||+|| +|+++.+++.++++++.. . ++.+. .+|.. .. ...
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~--nv~~i--~~D~~----~~--~~~-- 135 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--K--NIIPI--LADAR----KP--ERY-- 135 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--C--CcEEE--ECCCC----Cc--chh--
Confidence 457889999999 899999999998887653 1 23332 34431 00 000
Q ss_pred hcccccccCCCCCCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEEEe
Q 041970 274 YLSSHKIRGISETEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 274 ~~~~~~~~~~~~~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LIlS 321 (327)
..+ .++||+|+.++... ....++..+.+.|||||+++++
T Consensus 136 -------~~l--~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 136 -------AHV--VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -------hhc--cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 011 34699999886432 2334578899999999999984
No 122
>PRK01581 speE spermidine synthase; Validated
Probab=97.79 E-value=9.7e-05 Score=73.33 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=68.7
Q ss_pred eEEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHH---
Q 041970 186 NIILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAA--- 241 (327)
Q Consensus 186 ~I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~--- 241 (327)
.+.||--+=|-+.. +--+.++..-.-......++||++|| ||||+.+++.|+++-.
T Consensus 119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 119 RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence 35555555454433 22233333322112234568888888 9999999999997321
Q ss_pred hc--CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------HH--HHHHHHHhhc
Q 041970 242 LN--NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------PL--LQLADHIVSY 311 (327)
Q Consensus 242 lN--gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------vL--~~L~p~i~~~ 311 (327)
.| .....|++++ .+|+. +.+. . ..++||+|++++.-. .+ .++...+.++
T Consensus 199 ~~~~~~~DpRV~vv--i~Da~---------~fL~--------~--~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~ 257 (374)
T PRK01581 199 LNKSAFFDNRVNVH--VCDAK---------EFLS--------S--PSSLYDVIIIDFPDPATELLSTLYTSELFARIATF 257 (374)
T ss_pred hccccCCCCceEEE--ECcHH---------HHHH--------h--cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHh
Confidence 22 2334577775 35542 1111 1 146899999996421 11 4577889999
Q ss_pred cCCCcEEEEe
Q 041970 312 AKPGAVVGIS 321 (327)
Q Consensus 312 LkpGG~LIlS 321 (327)
|+|||+++.-
T Consensus 258 LkPgGV~V~Q 267 (374)
T PRK01581 258 LTEDGAFVCQ 267 (374)
T ss_pred cCCCcEEEEe
Confidence 9999998764
No 123
>PLN02366 spermidine synthase
Probab=97.79 E-value=0.00017 Score=69.98 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=71.2
Q ss_pred eeEEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh-
Q 041970 185 TNIILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL- 242 (327)
Q Consensus 185 ~~I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l- 242 (327)
..+.||-.+-+.+.. +.-..+....-.......++||++|| ||||+..++.|++....
T Consensus 59 ~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~ 138 (308)
T PLN02366 59 KVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL 138 (308)
T ss_pred eEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh
Confidence 356666555555444 11122222111111245689999999 89999999999998753
Q ss_pred c-CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HH--HHHHHHHHhhccCC
Q 041970 243 N-NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NP--LLQLADHIVSYAKP 314 (327)
Q Consensus 243 N-gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~v--L~~L~p~i~~~Lkp 314 (327)
+ +++..|+++. .+|.. +.++ .. ..++||+|+.+... .. -.++...+.++|+|
T Consensus 139 ~~~~~dpRv~vi--~~Da~---------~~l~--------~~-~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~p 198 (308)
T PLN02366 139 AVGFDDPRVNLH--IGDGV---------EFLK--------NA-PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRP 198 (308)
T ss_pred ccccCCCceEEE--EChHH---------HHHh--------hc-cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCC
Confidence 2 3444678875 35531 1111 11 14589999998642 11 23567889999999
Q ss_pred CcEEEE
Q 041970 315 GAVVGI 320 (327)
Q Consensus 315 GG~LIl 320 (327)
||.++.
T Consensus 199 gGvlv~ 204 (308)
T PLN02366 199 GGVVCT 204 (308)
T ss_pred CcEEEE
Confidence 999875
No 124
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=8.3e-05 Score=67.28 Aligned_cols=99 Identities=23% Similarity=0.314 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHhhh---cC--CCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970 201 ATTKLCLLLLRSLI---KG--GELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL 254 (327)
Q Consensus 201 ~TT~lcLe~Le~~~---~~--g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~ 254 (327)
+.|-+.|.+|++-. +. .+-++++|| +||+|.|.+++++-|+.|++.. .+
T Consensus 23 EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~---~~-- 97 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHI---DV-- 97 (209)
T ss_pred chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCcc---ce--
Confidence 45778888887643 22 356999999 9999999999999999999863 33
Q ss_pred cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------HHHHHHHHHHhh
Q 041970 255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------NPLLQLADHIVS 310 (327)
Q Consensus 255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------~vL~~L~p~i~~ 310 (327)
+..|+. . .+. .++.|+++-|+.. .++.+|+|++..
T Consensus 98 V~tdl~--------~------------~l~-~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~ 156 (209)
T KOG3191|consen 98 VRTDLL--------S------------GLR-NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPD 156 (209)
T ss_pred eehhHH--------h------------hhc-cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhh
Confidence 234542 1 122 4789999999752 467789999999
Q ss_pred ccCCCcEEEEeeccC
Q 041970 311 YAKPGAVVGISGILS 325 (327)
Q Consensus 311 ~LkpGG~LIlSGIl~ 325 (327)
.|.|.|.+++-++-.
T Consensus 157 iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 157 ILSPRGVFYLVALRA 171 (209)
T ss_pred hcCcCceEEeeehhh
Confidence 999999999987643
No 125
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.78 E-value=0.00025 Score=65.41 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=53.0
Q ss_pred cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC-------------CCcEEEEecCCCCCCCC
Q 041970 215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG-------------PKKMKLHLVPDRTFPSS 263 (327)
Q Consensus 215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~-------------~~~v~v~~~~~d~~~~~ 263 (327)
.++.+|||+|| ||+++.||+.+.. .|++. ..++++. .+|.+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~--~~D~~--- 107 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIY--CGDFF--- 107 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEE--ECccc---
Confidence 45679999999 9999999998742 33332 1234443 35543
Q ss_pred ccccccchhhhcccccccCCCCCCCeeEEEEc-----CChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 264 MNERVDGIVEYLSSHKIRGISETEEYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 264 ~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-----Ila~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
++ .....+.||+|+.= +..+.-.+.+..+.++|+|||++++-
T Consensus 108 ------~l----------~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 108 ------AL----------TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred ------CC----------CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 00 00012578999843 33344467789999999999975543
No 126
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.78 E-value=6.4e-05 Score=75.00 Aligned_cols=107 Identities=20% Similarity=0.304 Sum_probs=72.5
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCC
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNI 245 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv 245 (327)
.+...|-|.|.- ..+.++++++... +++.+|||++| +|+++.|++.+++|+++|++
T Consensus 31 ~vFyqp~~~~nr---dl~~~v~~~~~~~-~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~ 106 (382)
T PRK04338 31 PVFYNPRMELNR---DISVLVLRAFGPK-LPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL 106 (382)
T ss_pred CeeeCccccchh---hHHHHHHHHHHhh-cCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 466777776652 3344455554311 13468999999 99999999999999999998
Q ss_pred CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.. +++. .+|+ ..++ ....+||+|+.|+... -..+++.....+++||.+.+|
T Consensus 107 ~~--~~v~--~~Da---------~~~l-----------~~~~~fD~V~lDP~Gs-~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 107 EN--EKVF--NKDA---------NALL-----------HEERKFDVVDIDPFGS-PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred Cc--eEEE--hhhH---------HHHH-----------hhcCCCCEEEECCCCC-cHHHHHHHHHHhcCCCEEEEE
Confidence 62 4443 3443 1111 0035799999999733 344556656678999999988
No 127
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.77 E-value=6.4e-05 Score=68.36 Aligned_cols=86 Identities=20% Similarity=0.359 Sum_probs=57.9
Q ss_pred HHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccc
Q 041970 207 LLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER 267 (327)
Q Consensus 207 Le~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~ 267 (327)
++.+.+.+.+|.+|||+|| +|||+..|..+.+ +|++ | .++|+-
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rGv~-----V--iq~Dld------- 65 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RGVS-----V--IQGDLD------- 65 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cCCC-----E--EECCHH-------
Confidence 4567778889999999999 9999999888654 5664 2 246651
Q ss_pred ccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 268 VDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+++ ..+ ++..||.||.+-..+.+..--.-+.+.|+-|...|+|
T Consensus 66 -~gL---------~~f-~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVs 108 (193)
T PF07021_consen 66 -EGL---------ADF-PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVS 108 (193)
T ss_pred -HhH---------hhC-CCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEE
Confidence 111 123 4789999997765555444333455556667676665
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.76 E-value=0.00013 Score=63.99 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=52.4
Q ss_pred cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
.++++|||+|| +|+|+.+++.+++|++.+ .++++. .+|.. ++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii--~~D~~---------~~----- 71 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA----DNLTVI--HGDAL---------KF----- 71 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC----CCEEEE--ECchh---------cC-----
Confidence 45678888888 999999999999998542 346654 45652 11
Q ss_pred cccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhc--cCCCcEEEE
Q 041970 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSY--AKPGAVVGI 320 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~--LkpGG~LIl 320 (327)
.. ...+||.|++|++.++-..++..+.+. +.++|.+++
T Consensus 72 -----~~-~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 72 -----DL-PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred -----Cc-cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence 11 134699999999876544444444432 346776654
No 129
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=7.2e-05 Score=67.92 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=43.9
Q ss_pred cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
-.|++|+|+|| ||+||.|++.+++|+..++ .++++. ..|.
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~--~~dv---------------- 102 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFV--VADV---------------- 102 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEE--Ecch----------------
Confidence 35778999999 9999999999999999844 346654 2443
Q ss_pred ccccccCCCCCCCeeEEEEcCChH
Q 041970 276 SSHKIRGISETEEYDVVIANILLN 299 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~ 299 (327)
..+ .+++|.|+.|+..+
T Consensus 103 -----~~~--~~~~dtvimNPPFG 119 (198)
T COG2263 103 -----SDF--RGKFDTVIMNPPFG 119 (198)
T ss_pred -----hhc--CCccceEEECCCCc
Confidence 122 67899999999753
No 130
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.73 E-value=0.00025 Score=53.46 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=51.6
Q ss_pred eeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----H
Q 041970 224 GTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----N 299 (327)
Q Consensus 224 GcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----~ 299 (327)
-++|+++.++..++++.+.++. .++++. .+|.. +. .. ...++||+|++|... .
T Consensus 25 ~~~d~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~---------~~---------~~-~~~~~~d~i~~~~~~~~~~~ 81 (107)
T cd02440 25 TGVDISPVALELARKAAAALLA--DNVEVL--KGDAE---------EL---------PP-EADESFDVIISDPPLHHLVE 81 (107)
T ss_pred EEEeCCHHHHHHHHHHHhcccc--cceEEE--EcChh---------hh---------cc-ccCCceEEEEEccceeehhh
Confidence 3389999999999976555543 345553 34431 10 00 124689999999764 3
Q ss_pred HHHHHHHHHhhccCCCcEEEEe
Q 041970 300 PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 300 vL~~L~p~i~~~LkpGG~LIlS 321 (327)
....++..+.+.++|||+++++
T Consensus 82 ~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 82 DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred HHHHHHHHHHHHcCCCCEEEEE
Confidence 4677888899999999999886
No 131
>PHA03411 putative methyltransferase; Provisional
Probab=97.73 E-value=9.4e-05 Score=70.86 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=44.2
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP----- 300 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v----- 300 (327)
+|+++.+++.|++|. + ++++. .+|.. + ....++||+|++|+....
T Consensus 94 VDisp~al~~Ar~n~--~-----~v~~v--~~D~~---------e------------~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 94 VELNPEFARIGKRLL--P-----EAEWI--TSDVF---------E------------FESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred EECCHHHHHHHHHhC--c-----CCEEE--ECchh---------h------------hcccCCCcEEEEcCCccccCchh
Confidence 899999999999984 2 23332 35542 1 111458999999986321
Q ss_pred ------------------HHHHHHHHhhccCCCcEEEE
Q 041970 301 ------------------LLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 301 ------------------L~~L~p~i~~~LkpGG~LIl 320 (327)
+.+++.....+|+|+|.+++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 35667777889999997654
No 132
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.69 E-value=0.00023 Score=64.90 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=54.8
Q ss_pred hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970 214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE 273 (327)
Q Consensus 214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~ 273 (327)
+.++.+|||+|| +|+++.|++.|++|.. + +.+. .+++.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--~-----~~~~--~~d~~------------- 98 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--N-----INII--QGSLF------------- 98 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--C-----CcEE--Eeecc-------------
Confidence 356789999999 9999999999998742 1 2222 24431
Q ss_pred hcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeeccC
Q 041970 274 YLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 274 ~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
... ..++||+|++|-... .+..++..+.+.+ +++++++++..
T Consensus 99 -------~~~-~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 99 -------DPF-KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred -------CCC-CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 011 256899999986432 3566777777776 56888887643
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.69 E-value=0.00013 Score=68.95 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=50.2
Q ss_pred ecCCHHHHHHHHHHHHhc-C-CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--H--
Q 041970 226 VDIDPQVIKSAHQNAALN-N-IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--N-- 299 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lN-g-v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~-- 299 (327)
+|+|+.+++.|+++.... + +...++++.. +|.. +.+. . ..++||+|+++... .
T Consensus 102 veid~~vi~~a~~~~~~~~~~~~~~~v~i~~--~D~~---------~~l~--------~--~~~~yDvIi~D~~~~~~~~ 160 (270)
T TIGR00417 102 VDIDEKVIELSKKFLPSLAGSYDDPRVDLQI--DDGF---------KFLA--------D--TENTFDVIIVDSTDPVGPA 160 (270)
T ss_pred EeCCHHHHHHHHHHhHhhcccccCCceEEEE--CchH---------HHHH--------h--CCCCccEEEEeCCCCCCcc
Confidence 899999999999987543 2 2334566542 4431 1110 1 14689999998641 1
Q ss_pred -H--HHHHHHHHhhccCCCcEEEEe
Q 041970 300 -P--LLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 300 -v--L~~L~p~i~~~LkpGG~LIlS 321 (327)
. ..+....+.++|+|||.+++.
T Consensus 161 ~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 161 ETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred cchhHHHHHHHHHHHhCCCcEEEEc
Confidence 1 245677899999999999875
No 134
>PRK06202 hypothetical protein; Provisional
Probab=97.67 E-value=0.00011 Score=67.51 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=40.5
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----H-H
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----N-P 300 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----~-v 300 (327)
+|+++.+++.|+++...+++. +.+. ..+.+ .. .+++||+|++|... + .
T Consensus 94 vD~s~~~l~~a~~~~~~~~~~---~~~~--~~~~l---------------------~~-~~~~fD~V~~~~~lhh~~d~~ 146 (232)
T PRK06202 94 IDPDPRAVAFARANPRRPGVT---FRQA--VSDEL---------------------VA-EGERFDVVTSNHFLHHLDDAE 146 (232)
T ss_pred EcCCHHHHHHHHhccccCCCe---EEEE--ecccc---------------------cc-cCCCccEEEECCeeecCChHH
Confidence 899999999999987666543 2221 11211 01 25689999999643 2 2
Q ss_pred HHHHHHHHhhccC
Q 041970 301 LLQLADHIVSYAK 313 (327)
Q Consensus 301 L~~L~p~i~~~Lk 313 (327)
+..++..+.+.++
T Consensus 147 ~~~~l~~~~r~~~ 159 (232)
T PRK06202 147 VVRLLADSAALAR 159 (232)
T ss_pred HHHHHHHHHHhcC
Confidence 4567888888887
No 135
>PRK03612 spermidine synthase; Provisional
Probab=97.67 E-value=0.00023 Score=73.57 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=70.7
Q ss_pred eeEEEccCcccCCCc-hhhHHHHHH-HHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh
Q 041970 185 TNIILNPGLAFGTGE-HATTKLCLL-LLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL 242 (327)
Q Consensus 185 ~~I~idPG~AFGTG~-H~TT~lcLe-~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l 242 (327)
..+.+|-.+-|.+.. +.-..+... .+. ..+++++|||+|| +||||.+++.|++|...
T Consensus 265 ~~L~ldG~~q~s~~de~~y~e~l~~~~l~-~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l 343 (521)
T PRK03612 265 LRLYLNGRLQFSSRDEYRYHEALVHPAMA-ASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPAL 343 (521)
T ss_pred eEEEECCEeeccCccHHHHHHHHHHHHHh-hCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcc
Confidence 456677655555433 111122111 111 1245689999999 99999999999997543
Q ss_pred c-----CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH--------HHHHHHHHh
Q 041970 243 N-----NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP--------LLQLADHIV 309 (327)
Q Consensus 243 N-----gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v--------L~~L~p~i~ 309 (327)
+ ..+..++++. .+|.. +.+. . ..++||+|++|..... -.++...+.
T Consensus 344 ~~~~~~~~~dprv~vi--~~Da~---------~~l~--------~--~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~ 402 (521)
T PRK03612 344 RALNGGALDDPRVTVV--NDDAF---------NWLR--------K--LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLK 402 (521)
T ss_pred hhhhccccCCCceEEE--EChHH---------HHHH--------h--CCCCCCEEEEeCCCCCCcchhccchHHHHHHHH
Confidence 3 2333467764 35541 1111 1 1468999999964211 134678899
Q ss_pred hccCCCcEEEEe
Q 041970 310 SYAKPGAVVGIS 321 (327)
Q Consensus 310 ~~LkpGG~LIlS 321 (327)
++|||||.+++.
T Consensus 403 ~~L~pgG~lv~~ 414 (521)
T PRK03612 403 RRLAPDGLLVVQ 414 (521)
T ss_pred HhcCCCeEEEEe
Confidence 999999999874
No 136
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.66 E-value=0.00016 Score=73.33 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=56.5
Q ss_pred CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970 216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS 277 (327)
Q Consensus 216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~ 277 (327)
++++|||+|| +|+++.+++.+++ .|+.. .++.+. .+|.. . ..
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~-~~i~~~--~~d~~----~---~~------- 96 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHY-KNVKFM--CADVT----S---PD------- 96 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccC-CceEEE--Eeccc----c---cc-------
Confidence 5679999999 9999999987654 33322 345553 24431 0 00
Q ss_pred ccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEe
Q 041970 278 HKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 278 ~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlS 321 (327)
... +.++||+|++|..... +..++..+.+.|||||++++.
T Consensus 97 ---~~~-~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 97 ---LNI-SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ---cCC-CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 011 2568999999975443 567889999999999999875
No 137
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.61 E-value=0.00028 Score=70.67 Aligned_cols=74 Identities=9% Similarity=0.177 Sum_probs=54.8
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------ 299 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------ 299 (327)
+|+++.+++.|.++++.+++. .+.+. .+|+. .+. ..+ +.+.+|.|+.|..-.
T Consensus 152 IEI~~~~i~~a~~ka~~~gL~--NV~~i--~~DA~---------~ll--------~~~-~~~s~D~I~lnFPdPW~KkrH 209 (390)
T PRK14121 152 IEIHTPSIEQVLKQIELLNLK--NLLII--NYDAR---------LLL--------ELL-PSNSVEKIFVHFPVPWDKKPH 209 (390)
T ss_pred EECCHHHHHHHHHHHHHcCCC--cEEEE--ECCHH---------Hhh--------hhC-CCCceeEEEEeCCCCccccch
Confidence 999999999999999999986 36653 45541 111 012 367899999996421
Q ss_pred ---HHHHHHHHHhhccCCCcEEEEe
Q 041970 300 ---PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 300 ---vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+...++..+.++|+|||.+.+.
T Consensus 210 RRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 210 RRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred hhccHHHHHHHHHHHcCCCcEEEEE
Confidence 2356889999999999998874
No 138
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00031 Score=66.33 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=54.0
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA 305 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~ 305 (327)
+|+++.-.+.|++|++.-++. +++++. .+|.. + .. ....||.|+..+.... +.+
T Consensus 125 yE~r~d~~k~A~~Nl~~~~l~-d~v~~~--~~Dv~---------~-----------~~-~~~~vDav~LDmp~PW--~~l 178 (256)
T COG2519 125 YEIREDFAKTARENLSEFGLG-DRVTLK--LGDVR---------E-----------GI-DEEDVDAVFLDLPDPW--NVL 178 (256)
T ss_pred EEecHHHHHHHHHHHHHhccc-cceEEE--ecccc---------c-----------cc-cccccCEEEEcCCChH--HHH
Confidence 899999999999999999887 567664 46653 0 11 1348999999987543 567
Q ss_pred HHHhhccCCCcEEEE
Q 041970 306 DHIVSYAKPGAVVGI 320 (327)
Q Consensus 306 p~i~~~LkpGG~LIl 320 (327)
+.+.+.|+|||.+++
T Consensus 179 e~~~~~Lkpgg~~~~ 193 (256)
T COG2519 179 EHVSDALKPGGVVVV 193 (256)
T ss_pred HHHHHHhCCCcEEEE
Confidence 899999999998764
No 139
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.57 E-value=0.00025 Score=69.58 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=55.0
Q ss_pred CCCeeeeeee-------------------ecCCHHHHHHHHHHHHh-cCC-CC--C--cEEEEecCCCCCCCCccccccc
Q 041970 216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAAL-NNI-GP--K--KMKLHLVPDRTFPSSMNERVDG 270 (327)
Q Consensus 216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~l-Ngv-~~--~--~v~v~~~~~d~~~~~~~g~~~~ 270 (327)
++.+|||+|| +||+..+|+.|++-.+. +.- .. . .+......+|.+. ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~-------~~ 134 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS-------ES 134 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC-------SH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc-------ch
Confidence 7889999999 99999999999987621 110 00 0 0122222455531 11
Q ss_pred hhhhcccccccCCCC-CCCeeEEEEcCCh-------HHHHHHHHHHhhccCCCcEEEEe
Q 041970 271 IVEYLSSHKIRGISE-TEEYDVVIANILL-------NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 271 l~~~~~~~~~~~~~~-~~~fDlVvANIla-------~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+. ..+.. ..+||+|-|-.-. .-...++..+..+|+|||+||..
T Consensus 135 l~--------~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 135 LR--------EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp HH--------CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hh--------hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 01111 3599999998643 45677999999999999999864
No 140
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.57 E-value=0.00027 Score=64.16 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=63.6
Q ss_pred HHHHHHHhhhc------CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970 205 LCLLLLRSLIK------GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR 258 (327)
Q Consensus 205 lcLe~Le~~~~------~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d 258 (327)
-...||.+... .-.+|||+|| ||.++.||+.|+.-|++++++ +.|++. +.|
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~--q~D 126 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQ--QLD 126 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEE--Eee
Confidence 44567766543 2239999999 999999999999999999998 557764 345
Q ss_pred CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----------HHHHHHHHHhhccCCCcEEEE
Q 041970 259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----------vL~~L~p~i~~~LkpGG~LIl 320 (327)
+. .+ .. ..++||+|+---..+ -+...+..+.+.|+|||+|++
T Consensus 127 I~----~~---------------~~-~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 127 IT----DP---------------DF-LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred cc----CC---------------cc-cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEE
Confidence 42 00 11 257888887443211 113346678899999998875
No 141
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.54 E-value=0.00061 Score=60.84 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=51.9
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------- 298 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------- 298 (327)
+|||+.+|+.|++|++..|+. +.+.+. ..|.. ++ . ...+.+|+||+|+..
T Consensus 67 ~Di~~~~v~~a~~N~~~ag~~-~~i~~~--~~D~~---------~l---------~--~~~~~~d~IvtnPPyG~r~~~~ 123 (179)
T PF01170_consen 67 SDIDPKAVRGARENLKAAGVE-DYIDFI--QWDAR---------EL---------P--LPDGSVDAIVTNPPYGRRLGSK 123 (179)
T ss_dssp EESSHHHHHHHHHHHHHTT-C-GGEEEE--E--GG---------GG---------G--GTTSBSCEEEEE--STTSHCHH
T ss_pred cCCCHHHHHHHHHHHHhcccC-CceEEE--ecchh---------hc---------c--cccCCCCEEEECcchhhhccCH
Confidence 799999999999999999987 566664 34431 11 1 125689999999863
Q ss_pred ----HHHHHHHHHHhhccCCCcEEEEee
Q 041970 299 ----NPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 299 ----~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
..+..+...+.+.+++...+++++
T Consensus 124 ~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 124 KDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp HHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 345567888899999977777765
No 142
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00029 Score=69.39 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=79.1
Q ss_pred eeEEEcc-CcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcC
Q 041970 185 TNIILNP-GLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 185 ~~I~idP-G~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNg 244 (327)
..+.+|+ ..-|..|.+---.-.+++ ...|.+|+|+=+ +||+|.|++..+||+++|+
T Consensus 160 ~~f~vD~~Kv~Fsprl~~ER~Rva~~----v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~ 235 (341)
T COG2520 160 CRFKVDVAKVYFSPRLSTERARVAEL----VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK 235 (341)
T ss_pred EEEEEchHHeEECCCchHHHHHHHhh----hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC
Confidence 4567777 355777776444433333 457999999988 9999999999999999999
Q ss_pred CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+. +++... .||.- ++. ...+.||-|++|.+..-. ..++.....+++||.+-.=.+.
T Consensus 236 v~-~~v~~i--~gD~r---------ev~-----------~~~~~aDrIim~~p~~a~-~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 236 VE-GRVEPI--LGDAR---------EVA-----------PELGVADRIIMGLPKSAH-EFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred cc-ceeeEE--eccHH---------Hhh-----------hccccCCEEEeCCCCcch-hhHHHHHHHhhcCcEEEEEecc
Confidence 98 556543 46641 111 112679999999885432 3567778888999987665444
No 143
>PRK05785 hypothetical protein; Provisional
Probab=97.50 E-value=0.00024 Score=65.58 Aligned_cols=91 Identities=11% Similarity=0.155 Sum_probs=59.6
Q ss_pred cccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970 193 LAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH 253 (327)
Q Consensus 193 ~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~ 253 (327)
+.||.. +.-.+.+++.+..+..++.+|||+|| +|+++.+++.|+++. ..+
T Consensus 29 ~s~g~~-~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~--- 97 (226)
T PRK05785 29 ISFNQD-VRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKV--- 97 (226)
T ss_pred ccCCCc-HHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceE---
Confidence 345432 22344566666665556789999999 999999999998641 111
Q ss_pred ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCc
Q 041970 254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGA 316 (327)
Q Consensus 254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG 316 (327)
.++.. .+ ++ ++++||+|+++...+ .+...+.++.+.|||.+
T Consensus 98 --~~d~~---------~l----------p~-~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 98 --VGSFE---------AL----------PF-RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred --Eechh---------hC----------CC-CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 13321 10 12 267899999987432 34678889999999953
No 144
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.48 E-value=0.00078 Score=66.60 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=74.4
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhhcC-CCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKG-GELFLDYGT------------------VDIDPQVIKSAHQNAALNNI 245 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~-g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv 245 (327)
..+.+.|+- |---.+.-+...++++.+++.. +.+|||++| ||+++.|++.|++|++.|++
T Consensus 175 ~~~~~~~~s-F~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~ 253 (362)
T PRK05031 175 FIYRQVENS-FTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI 253 (362)
T ss_pred EEEEeCCCC-eeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 356677765 5445666777777777776653 358999999 99999999999999999998
Q ss_pred CCCcEEEEecCCCCCCCCccccccchhhhcccccc----cCCC-CCCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEE
Q 041970 246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI----RGIS-ETEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~----~~~~-~~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LI 319 (327)
+ ++++. .+|+. +.+........ .... ...+||+|+.++... ....++..+.+ |++.++
T Consensus 254 ~--~v~~~--~~d~~---------~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivy 317 (362)
T PRK05031 254 D--NVQII--RMSAE---------EFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILY 317 (362)
T ss_pred C--cEEEE--ECCHH---------HHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEE
Confidence 5 46664 45542 11110000000 0000 012599999998742 22333344433 677777
Q ss_pred Ee
Q 041970 320 IS 321 (327)
Q Consensus 320 lS 321 (327)
+|
T Consensus 318 vS 319 (362)
T PRK05031 318 IS 319 (362)
T ss_pred EE
Confidence 76
No 145
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00017 Score=66.93 Aligned_cols=88 Identities=24% Similarity=0.341 Sum_probs=62.4
Q ss_pred HHHHHHHHHhh-hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 203 TKLCLLLLRSL-IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 203 T~lcLe~Le~~-~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
||=..+++.+. +..-.+|.|+|| +|-|+.+++.|++-. . .+++. .+|+
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p--~~~f~--~aDl-- 84 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----P--DATFE--EADL-- 84 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----C--CCcee--cccH--
Confidence 44455566554 234568999999 999999999986542 1 13332 3443
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEEE
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LIl 320 (327)
+.+.+..++|+++||-..+-+ ..+++.+...|.|||.|.+
T Consensus 85 -------------------~~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 85 -------------------RTWKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred -------------------hhcCCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence 234456789999999876544 5689999999999999864
No 146
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.44 E-value=0.00037 Score=63.67 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCCeeEEEEcCCh--------H------HHHHHHHHHhhccCCCcEEEEe
Q 041970 286 TEEYDVVIANILL--------N------PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 286 ~~~fDlVvANIla--------~------vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.++||+|++|+.. + .+..++..+.++|+|||.|++.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5689999999732 1 1345778899999999999985
No 147
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.44 E-value=0.00038 Score=65.71 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=57.9
Q ss_pred hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970 214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV 272 (327)
Q Consensus 214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~ 272 (327)
+++|++||+.|+ +|+.+.-.+.|++|++.+|+. +.+++. ..|.+ .+|..+
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~--~~Dv~---~~g~~~--- 108 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVH--HRDVC---EEGFDE--- 108 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEE--ES-GG---CG--ST---
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeE--eccee---cccccc---
Confidence 578888888888 999999999999999999997 678775 45653 111100
Q ss_pred hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhcc-CCCcEEEE
Q 041970 273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYA-KPGAVVGI 320 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~L-kpGG~LIl 320 (327)
.+ ...+|.|+-.+...- ..+|.+.+.| ++||++.+
T Consensus 109 ---------~~--~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 109 ---------EL--ESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp ---------T---TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEE
T ss_pred ---------cc--cCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEE
Confidence 11 467999999987543 2467788889 89998753
No 148
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.43 E-value=0.0014 Score=64.52 Aligned_cols=120 Identities=12% Similarity=0.041 Sum_probs=71.6
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhhc-CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIK-GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNI 245 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~-~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv 245 (327)
..+.+.|+..| --....+...++++.+++. .+++|||+|| ||+++.|++.|++|++.|++
T Consensus 166 ~~~~~~~~~F~-Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~ 244 (353)
T TIGR02143 166 FIYRQVENSFT-QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI 244 (353)
T ss_pred EEEEECCCCcc-cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 45777787644 3334455555666666654 2457999999 99999999999999999998
Q ss_pred CCCcEEEEecCCCCCCCCccccccchhhhcccc-cc---cCCC-CCCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEE
Q 041970 246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSH-KI---RGIS-ETEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~-~~---~~~~-~~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LI 319 (327)
+ ++++. .+|.. +........ .. .... ...+||+|+.++... ....++..+.+ |++.++
T Consensus 245 ~--~v~~~--~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivY 308 (353)
T TIGR02143 245 D--NVQII--RMSAE---------EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILY 308 (353)
T ss_pred C--cEEEE--EcCHH---------HHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEE
Confidence 5 36654 45541 111100000 00 0000 012489999998742 23334444433 678888
Q ss_pred Ee
Q 041970 320 IS 321 (327)
Q Consensus 320 lS 321 (327)
+|
T Consensus 309 vs 310 (353)
T TIGR02143 309 IS 310 (353)
T ss_pred EE
Confidence 76
No 149
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.43 E-value=0.00075 Score=64.91 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=45.2
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEE-----cCChHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA-----NILLNP 300 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA-----NIla~v 300 (327)
+|+++.+++.|+++++...-. .++.. ..+|... + ..+. ... ......+++. |...+-
T Consensus 94 iDiS~~mL~~a~~~l~~~~p~-~~v~~--i~gD~~~----~--~~~~--------~~~-~~~~~~~~~~gs~~~~~~~~e 155 (301)
T TIGR03438 94 IDISADALKESAAALAADYPQ-LEVHG--ICADFTQ----P--LALP--------PEP-AAGRRLGFFPGSTIGNFTPEE 155 (301)
T ss_pred EECCHHHHHHHHHHHHhhCCC-ceEEE--EEEcccc----h--hhhh--------ccc-ccCCeEEEEecccccCCCHHH
Confidence 999999999999998764311 22332 3455420 0 0000 000 0112233332 223445
Q ss_pred HHHHHHHHhhccCCCcEEEEe
Q 041970 301 LLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 301 L~~L~p~i~~~LkpGG~LIlS 321 (327)
...++..+.+.|+|||.|++.
T Consensus 156 ~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 156 AVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred HHHHHHHHHHhcCCCCEEEEe
Confidence 678899999999999999864
No 150
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.37 E-value=0.00047 Score=62.07 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=69.6
Q ss_pred CCCchhhHHHHHHHHHhhhc----CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970 196 GTGEHATTKLCLLLLRSLIK----GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKL 252 (327)
Q Consensus 196 GTG~H~TT~lcLe~Le~~~~----~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v 252 (327)
|.++-|||...-|.|=..+. .|.+|||+-| ||.|+.|++..++|++.-++. +++.+
T Consensus 18 ~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v 96 (183)
T PF03602_consen 18 GDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRV 96 (183)
T ss_dssp --TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEE
T ss_pred CCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceee
Confidence 46789999998887776654 5889999977 999999999999999998886 45665
Q ss_pred EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH--H-HHHHHHHHh--hccCCCcEEEEe
Q 041970 253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN--P-LLQLADHIV--SYAKPGAVVGIS 321 (327)
Q Consensus 253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--v-L~~L~p~i~--~~LkpGG~LIlS 321 (327)
. ..|.. ..+. . ......+||+|++.++.. . +..++..+. .+|+++|.+|+-
T Consensus 97 ~--~~d~~--------~~l~-~-------~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 97 I--KGDAF--------KFLL-K-------LAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp E--ESSHH--------HHHH-H-------HHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred e--ccCHH--------HHHH-h-------hcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 4 34431 1111 0 001257899999998742 2 356666666 789999998863
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.32 E-value=0.00083 Score=59.57 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=60.1
Q ss_pred CCCc--hhhHHHHHHHHHhh--------hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC-
Q 041970 196 GTGE--HATTKLCLLLLRSL--------IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN- 244 (327)
Q Consensus 196 GTG~--H~TT~lcLe~Le~~--------~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg- 244 (327)
|||. =|......++|.+. ...|++||++|| +|.++ +++..+.|+++|+
T Consensus 15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~ 93 (173)
T PF10294_consen 15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS 93 (173)
T ss_dssp --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--
T ss_pred CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc
Confidence 4554 46777777777763 356789999999 99999 9999999999998
Q ss_pred -CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc-CC--hHHHHHHHHHHhhccCCCcEEEE
Q 041970 245 -IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN-IL--LNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 245 -v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-Il--a~vL~~L~p~i~~~LkpGG~LIl 320 (327)
.. .++.+.. -+. . ++... ......+||+|+|- ++ ...+..|+..+.++++++|.+++
T Consensus 94 ~~~-~~v~v~~--L~W-----g---~~~~~--------~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 94 LLD-GRVSVRP--LDW-----G---DELDS--------DLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp -------EEEE----T-----T---S-HHH--------HHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred ccc-ccccCcE--EEe-----c---Ccccc--------cccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence 33 4555532 222 1 11100 01124589999974 33 35567788889999999998665
Q ss_pred e
Q 041970 321 S 321 (327)
Q Consensus 321 S 321 (327)
+
T Consensus 155 ~ 155 (173)
T PF10294_consen 155 A 155 (173)
T ss_dssp E
T ss_pred E
Confidence 5
No 152
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.31 E-value=0.00045 Score=61.76 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=25.6
Q ss_pred HHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHH
Q 041970 207 LLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQ 238 (327)
Q Consensus 207 Le~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~e 238 (327)
|+.+.+.++++++|||+|| +|+++.+++.|++
T Consensus 4 ~~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 4 LESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH
Confidence 4556666677889999999 8999999988764
No 153
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.28 E-value=0.0017 Score=66.58 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
+...++..+|..-.++|++|||+++ .|+++.-++..++|+++-|+. .+.+. ..|.
T Consensus 98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--nv~v~--~~D~ 173 (470)
T PRK11933 98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS--NVALT--HFDG 173 (470)
T ss_pred HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEE--eCch
Confidence 3456666666434578999999999 999999999999999999986 24443 2332
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCC
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKP 314 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~Lkp 314 (327)
. .+. .. ..+.||.|+.... +..-.+|+....+.|||
T Consensus 174 ~---------~~~---------~~-~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp 234 (470)
T PRK11933 174 R---------VFG---------AA-LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP 234 (470)
T ss_pred h---------hhh---------hh-chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 000 01 1357999997753 12235688889999999
Q ss_pred CcEEEEee
Q 041970 315 GAVVGISG 322 (327)
Q Consensus 315 GG~LIlSG 322 (327)
||+|+.|-
T Consensus 235 GG~LVYST 242 (470)
T PRK11933 235 GGTLVYST 242 (470)
T ss_pred CcEEEEEC
Confidence 99999884
No 154
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.21 E-value=0.0027 Score=59.37 Aligned_cols=92 Identities=14% Similarity=0.305 Sum_probs=73.5
Q ss_pred CCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970 216 GGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274 (327)
Q Consensus 216 ~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~ 274 (327)
..+++||+|+ +|||+.+.+.+.+-.++.|+. .+|++. .+.++ .+.++++.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i--~g~a~-----esLd~l~~- 143 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFI--EGPAL-----ESLDELLA- 143 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeee--ecchh-----hhHHHHHh-
Confidence 4679999998 999999999999999999998 678874 56653 34444442
Q ss_pred cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.. +.+.||.++..--..-.......+.+++|+||.|+.-.+|
T Consensus 144 -------~~-~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl 185 (237)
T KOG1663|consen 144 -------DG-ESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVL 185 (237)
T ss_pred -------cC-CCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccc
Confidence 11 3678999998887777778889999999999999987654
No 155
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.17 E-value=0.0014 Score=66.83 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=59.7
Q ss_pred HHHHHHhhhcC------CCeeeeeee------------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041970 206 CLLLLRSLIKG------GELFLDYGT------------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV 255 (327)
Q Consensus 206 cLe~Le~~~~~------g~~VLDvGc------------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~ 255 (327)
..++|.+.... ++.|||||| |+.+|.|+...++-++.|+.+ ++|+|.
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi-- 246 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVI-- 246 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEE--
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEE--
Confidence 34455555443 357999999 999999998888888899997 678874
Q ss_pred CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEE
Q 041970 256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LI 319 (327)
.+|. +.+...+++|+||+=++. +...+.+....+.|||||.+|
T Consensus 247 ~~d~---------------------r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 247 HGDM---------------------REVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ES-T---------------------TTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eCcc---------------------cCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4554 123335699999998763 233345667788999999876
No 156
>PLN02823 spermine synthase
Probab=97.11 E-value=0.0023 Score=62.99 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=50.8
Q ss_pred ecCCHHHHHHHHHHHHhcC--CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----H
Q 041970 226 VDIDPQVIKSAHQNAALNN--IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----N 299 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----~ 299 (327)
||||+..++.|+++...++ ....|++++ .+|.. ..+. . ..++||+|+....- .
T Consensus 133 VEiD~~vv~lar~~~~~~~~~~~dprv~v~--~~Da~---------~~L~--------~--~~~~yDvIi~D~~dp~~~~ 191 (336)
T PLN02823 133 CDIDQEVVDFCRKHLTVNREAFCDKRLELI--INDAR---------AELE--------K--RDEKFDVIIGDLADPVEGG 191 (336)
T ss_pred EECCHHHHHHHHHhcccccccccCCceEEE--EChhH---------HHHh--------h--CCCCccEEEecCCCccccC
Confidence 9999999999999987654 334577775 35542 1111 1 14689999998532 1
Q ss_pred H-----HHHHHH-HHhhccCCCcEEEEe
Q 041970 300 P-----LLQLAD-HIVSYAKPGAVVGIS 321 (327)
Q Consensus 300 v-----L~~L~p-~i~~~LkpGG~LIlS 321 (327)
+ -.++.. .+.++|+|||.+++-
T Consensus 192 ~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 192 PCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 1 124555 788999999998753
No 157
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.11 E-value=0.00021 Score=66.89 Aligned_cols=77 Identities=22% Similarity=0.383 Sum_probs=52.8
Q ss_pred Ceeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccccc
Q 041970 218 ELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHK 279 (327)
Q Consensus 218 ~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~ 279 (327)
+++||+|| |||+..+++.|.|. |+- +.+. +.++. .+.
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~Y-D~L~----~Aea~---------~Fl------- 181 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLY-DTLY----VAEAV---------LFL------- 181 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cch-HHHH----HHHHH---------HHh-------
Confidence 69999999 99999999998764 221 1111 11110 000
Q ss_pred ccCCCCCCCeeEEEEc---CChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 280 IRGISETEEYDVVIAN---ILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 280 ~~~~~~~~~fDlVvAN---Ila~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+.. ..++||+|+|- +...-|..++......|+|||.|++|
T Consensus 182 -~~~-~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 182 -EDL-TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred -hhc-cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence 001 25789999975 23456778899999999999999998
No 158
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0047 Score=62.76 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=70.2
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhhc--CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIK--GGELFLDYGT------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~--~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg 244 (327)
+...+.|+-.|=+ ...-+.-.+++..+.+. ++++|||+=| +|+++.||+.|++||+.|+
T Consensus 261 ~~~~~~~~sF~Q~-N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~ 339 (432)
T COG2265 261 VSFQISPRSFFQV-NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANG 339 (432)
T ss_pred eEEEeCCCCceec-CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcC
Confidence 4456677644443 33444444454444443 6689999988 9999999999999999999
Q ss_pred CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHH-HHHHHHhhccCCCcEEEEe
Q 041970 245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~-~L~p~i~~~LkpGG~LIlS 321 (327)
+. + +.+. .++. .++.. .......+|+||.++...=+. .++..+.+ ++|...+++|
T Consensus 340 i~-N-~~f~--~~~a---------e~~~~--------~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 340 ID-N-VEFI--AGDA---------EEFTP--------AWWEGYKPDVVVVDPPRAGADREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred CC-c-EEEE--eCCH---------HHHhh--------hccccCCCCEEEECCCCCCCCHHHHHHHHh-cCCCcEEEEe
Confidence 97 3 6664 3443 22211 111235789999998753222 34444333 4555555554
No 159
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.07 E-value=0.0084 Score=55.92 Aligned_cols=93 Identities=10% Similarity=0.117 Sum_probs=57.3
Q ss_pred HHHHhhh-cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC-------------CCcEEEEec
Q 041970 208 LLLRSLI-KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG-------------PKKMKLHLV 255 (327)
Q Consensus 208 e~Le~~~-~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~-------------~~~v~v~~~ 255 (327)
+++.++. .+|.+||+.|| +|+++.||+.+.+. |++. ...+++.
T Consensus 34 ~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~~i~~~-- 108 (226)
T PRK13256 34 KHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQ---NTINYEVIHGNDYKLYKGDDIEIY-- 108 (226)
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHH---cCCCcceecccccceeccCceEEE--
Confidence 4444443 35679999999 99999999998552 2111 1234543
Q ss_pred CCCCCCCCccccccchhhhcccccccCC-CCCCCeeEEEEc-----CChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970 256 PDRTFPSSMNERVDGIVEYLSSHKIRGI-SETEEYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~-~~~~~fDlVvAN-----Ila~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
.+|.+. + ... ...++||+|.== +..+.=.+.+..+.++|+|||.+++--+
T Consensus 109 ~gD~f~---------l---------~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 109 VADIFN---------L---------PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred EccCcC---------C---------CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 466641 1 000 013579997521 2233345678889999999999887544
No 160
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0051 Score=55.84 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=71.8
Q ss_pred CCCchhhHHHHHHHHHhhhc----CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970 196 GTGEHATTKLCLLLLRSLIK----GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKL 252 (327)
Q Consensus 196 GTG~H~TT~lcLe~Le~~~~----~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v 252 (327)
|.|+-|||--.-|.|=..+. .|.++||+-+ ||.|..|+...++|++.-++. .+.++
T Consensus 19 ~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~ 97 (187)
T COG0742 19 GPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARV 97 (187)
T ss_pred CCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEE
Confidence 57889999888887776654 4789999966 999999999999999988865 34554
Q ss_pred EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH--HHHHHHHH----HhhccCCCcEEEE
Q 041970 253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN--PLLQLADH----IVSYAKPGAVVGI 320 (327)
Q Consensus 253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--vL~~L~p~----i~~~LkpGG~LIl 320 (327)
. ..|.. ..+. ......+||+|+..++.+ .+...... -..+|+|+|.+++
T Consensus 98 ~--~~da~---------~~L~--------~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 98 L--RNDAL---------RALK--------QLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred E--eecHH---------HHHH--------hcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 3 34431 1111 111123599999998754 33211122 3477999999886
No 161
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.04 E-value=0.0032 Score=62.83 Aligned_cols=108 Identities=13% Similarity=0.256 Sum_probs=71.2
Q ss_pred EEEccCcccCCCchhhHHHHHHHHHhhhcC--CCeeeeeee---------------------ecCCHHHHHHHHHHHHhc
Q 041970 187 IILNPGLAFGTGEHATTKLCLLLLRSLIKG--GELFLDYGT---------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~--g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN 243 (327)
+.-+|-|.|.- -.+-+++....+...+ +-+|||+.| +|++|.|++.+++|+++|
T Consensus 16 vFYNP~~~~nR---Dlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N 92 (374)
T TIGR00308 16 VFYNPRMQFNR---DLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN 92 (374)
T ss_pred cccCchhhccc---cHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 45566676652 2344555444433221 137888777 999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
++. .+++. .+|+. .++. . ...+||+|..++.. .-..+++.+.+.+++||+|.++
T Consensus 93 ~~~--~~~v~--~~Da~---------~~l~--------~--~~~~fDvIdlDPfG-s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 93 SVE--NIEVP--NEDAA---------NVLR--------Y--RNRKFHVIDIDPFG-TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCC--cEEEE--chhHH---------HHHH--------H--hCCCCCEEEeCCCC-CcHHHHHHHHHhcccCCEEEEE
Confidence 985 35543 44531 1211 0 13579999999953 3245777888889999999876
No 162
>PTZ00146 fibrillarin; Provisional
Probab=97.02 E-value=0.0025 Score=61.63 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCeeEEEEcCCh-HHHHHHHHHHhhccCCCcEEEEe
Q 041970 287 EEYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 287 ~~fDlVvANIla-~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+.+|+|+++... +....++..+.++|||||+|+++
T Consensus 201 ~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 201 PMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 479999998742 33334566788899999999984
No 163
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.00 E-value=0.0016 Score=59.61 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=53.0
Q ss_pred CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
.|++|||+|+ .|+||.++...+-|++.||++ +.+. ..|..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~---i~~~--~~d~~---------------- 137 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS---ILFT--HADLI---------------- 137 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce---eEEe--ecccc----------------
Confidence 5788999888 899999999999999999986 3332 33431
Q ss_pred cccccCCCCCCCeeEEEEc-CCh--HHHHHHHHHHhhccCCCcEEEEee
Q 041970 277 SHKIRGISETEEYDVVIAN-ILL--NPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvAN-Ila--~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
..+..||+|++- +.. ..-.+++| ....++..|.-++-|
T Consensus 138 -------g~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 138 -------GSPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred -------CCCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEe
Confidence 125689999985 322 33345666 445555556555544
No 164
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.98 E-value=0.0028 Score=55.30 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=51.2
Q ss_pred ecCCHHHHHHHHHHHHhcCCC-CCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---H
Q 041970 226 VDIDPQVIKSAHQNAALNNIG-PKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---L 301 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~-~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L 301 (327)
+|+++.+++.|+++.+..+.. ..++++. .+|.. ++ +. .+++||+|+++..... .
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~--~~d~~---------~l----------p~-~~~~fD~v~~~~~l~~~~d~ 60 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWI--EGDAI---------DL----------PF-DDCEFDAVTMGYGLRNVVDR 60 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEE--Eechh---------hC----------CC-CCCCeeEEEecchhhcCCCH
Confidence 799999999998876543211 1346654 35541 11 11 2568999999864332 4
Q ss_pred HHHHHHHhhccCCCcEEEEeec
Q 041970 302 LQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 302 ~~L~p~i~~~LkpGG~LIlSGI 323 (327)
...+.++.+.|||||+|++.-+
T Consensus 61 ~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 61 LRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred HHHHHHHHHHcCcCeEEEEEEC
Confidence 5678899999999999987543
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.97 E-value=0.0016 Score=62.85 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=44.6
Q ss_pred cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
.++++|||+|| +|+|+.+++.+++|++.++.. +++++. .+|.+ +
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii--~~Dal---------~------ 96 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVI--EGDAL---------K------ 96 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEE--ECCHh---------h------
Confidence 45677888887 999999999999999887754 457764 56653 0
Q ss_pred cccccCCCCCCCeeEEEEcCChHH
Q 041970 277 SHKIRGISETEEYDVVIANILLNP 300 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla~v 300 (327)
. ...+||+|++|+...+
T Consensus 97 ------~-~~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 97 ------T-EFPYFDVCVANVPYQI 113 (294)
T ss_pred ------h-cccccCEEEecCCccc
Confidence 1 1246899999987543
No 166
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.97 E-value=0.0017 Score=63.55 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=62.3
Q ss_pred HHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCcccc
Q 041970 209 LLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNER 267 (327)
Q Consensus 209 ~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~ 267 (327)
+|.+|.++++.++|+|| +||....|+.|++-.+. |.-..-.+.+....+|++ -++
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~----~~~ 185 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF----KER 185 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc----hhH
Confidence 56777889999999999 99999999999875542 111100112222356653 122
Q ss_pred ccchhhhcccccccCCCCCCCeeEEEEcCCh-------HHHHHHHHHHhhccCCCcEEEE
Q 041970 268 VDGIVEYLSSHKIRGISETEEYDVVIANILL-------NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------~vL~~L~p~i~~~LkpGG~LIl 320 (327)
..++. . ..+.+||+|=+-... .-...++..++++|+|||++|-
T Consensus 186 l~d~~---------e-~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 186 LMDLL---------E-FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred HHHhc---------c-CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 22221 1 113349999776532 3455678899999999999884
No 167
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.95 E-value=0.0066 Score=55.85 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=65.5
Q ss_pred HHHHHHHhhhcCCCe-eeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCC--cEEEEecCCCCCC
Q 041970 205 LCLLLLRSLIKGGEL-FLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPK--KMKLHLVPDRTFP 261 (327)
Q Consensus 205 lcLe~Le~~~~~g~~-VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~--~v~v~~~~~d~~~ 261 (327)
-.++.|.+++....+ ||+||| .|.|+.....-++.++..++++- -+.+.+.....
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w-- 90 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW-- 90 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC--
Confidence 357788888776665 999999 99999998787777777665421 12221111100
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEE-cCC----hHHHHHHHHHHhhccCCCcEEEEee
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIA-NIL----LNPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA-NIl----a~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
.+.. ......++||.|++ |.+ ......|+....++|++||.|++=|
T Consensus 91 ----~~~~-----------~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 91 ----PWEL-----------PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ----cccc-----------ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 0000 00002468999986 643 3456789999999999999999876
No 168
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.91 E-value=0.0026 Score=56.55 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCCeeEEEEcCCh--------H------HHHHHHHHHhhccCCCcEEEEeecc
Q 041970 286 TEEYDVVIANILL--------N------PLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 286 ~~~fDlVvANIla--------~------vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.++||+|++|... + .+..++..+.+.|+|||++++.+..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4579999998521 1 1356788899999999999997654
No 169
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0043 Score=61.93 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=55.9
Q ss_pred eecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCC-CCeeEEEEcCCh-----
Q 041970 225 TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISET-EEYDVVIANILL----- 298 (327)
Q Consensus 225 cVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~-~~fDlVvANIla----- 298 (327)
|+|||+.+|+.|+.||+..|+. +.|++. ++|+- . +... +.+|+||+|++.
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~-d~I~f~--~~d~~---------~------------l~~~~~~~gvvI~NPPYGeRlg 314 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVG-DLIEFK--QADAT---------D------------LKEPLEEYGVVISNPPYGERLG 314 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCC-ceEEEE--Ecchh---------h------------CCCCCCcCCEEEeCCCcchhcC
Confidence 4899999999999999999998 678875 34431 1 1112 689999999864
Q ss_pred ------HHHHHHHHHHhhccCCCcEEEEee
Q 041970 299 ------NPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 299 ------~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
..+..|...+.+.++-.+.+|+++
T Consensus 315 ~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 315 SEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred ChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 234556677778888888888876
No 170
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.88 E-value=0.0019 Score=61.67 Aligned_cols=73 Identities=22% Similarity=0.440 Sum_probs=44.7
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH----
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL---- 301 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL---- 301 (327)
+|+|+.++..|+.|+.++++......+. .+|.+. . .......+||+|++|++....
T Consensus 83 ~ei~~~~~~la~~nl~l~~~~~~~~~i~--~~d~l~-------~-----------~~~~~~~~~D~ii~NPPf~~~~~~~ 142 (311)
T PF02384_consen 83 IEIDPEAVALAKLNLLLHGIDNSNINII--QGDSLE-------N-----------DKFIKNQKFDVIIGNPPFGSKEWKD 142 (311)
T ss_dssp EES-HHHHHHHHHHHHHTTHHCBGCEEE--ES-TTT-------S-----------HSCTST--EEEEEEE--CTCES-ST
T ss_pred ecCcHHHHHHHHhhhhhhcccccccccc--cccccc-------c-----------cccccccccccccCCCCcccccccc
Confidence 8999999999999999998764433332 355430 0 011114689999999863211
Q ss_pred --------------------HHHHHHHhhccCCCcEE
Q 041970 302 --------------------LQLADHIVSYAKPGAVV 318 (327)
Q Consensus 302 --------------------~~L~p~i~~~LkpGG~L 318 (327)
..++..+.+.|++||++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 143 EELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp GGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred ccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 23567788999999974
No 171
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.87 E-value=0.0046 Score=66.29 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=48.5
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------- 298 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------- 298 (327)
+|+|+.|++.|++|++.+|+. +++.+. .+|.. ++. .....++||+||+|++.
T Consensus 262 ~Did~~av~~A~~N~~~~g~~-~~i~~~--~~D~~---------~~~---------~~~~~~~~d~IvtNPPYg~r~~~~ 320 (702)
T PRK11783 262 SDIDPRVIQAARKNARRAGVA-ELITFE--VKDVA---------DLK---------NPLPKGPTGLVISNPPYGERLGEE 320 (702)
T ss_pred EECCHHHHHHHHHHHHHcCCC-cceEEE--eCChh---------hcc---------cccccCCCCEEEECCCCcCccCch
Confidence 899999999999999999997 567764 45542 110 00113469999999864
Q ss_pred HHHHHHHHHHhhcc---CCCcEE-EEee
Q 041970 299 NPLLQLADHIVSYA---KPGAVV-GISG 322 (327)
Q Consensus 299 ~vL~~L~p~i~~~L---kpGG~L-IlSG 322 (327)
.-+..+-..+.+.+ .+|+.+ +++|
T Consensus 321 ~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 321 PALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 22333433333333 377765 4554
No 172
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.87 E-value=0.0025 Score=61.97 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=29.1
Q ss_pred CCCeeEEEEcCC----hHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 286 TEEYDVVIANIL----LNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 286 ~~~fDlVvANIl----a~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.+.||+|++--+ .+++. .+.++...|+|||.||+--++
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl~-~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPLD-HLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred cCCcCEEEEeeehhccCCHHH-HHHHHHHhhCCCCEEEEEEee
Confidence 568999998753 34554 566889999999999986554
No 173
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.85 E-value=0.0055 Score=58.36 Aligned_cols=73 Identities=14% Similarity=0.276 Sum_probs=49.1
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCc-EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc-CCh--HHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKK-MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN-ILL--NPL 301 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~-v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-Ila--~vL 301 (327)
.||+|.++..+++-++.-++..+. +.+ +.+|+ +++ ++ ++..||..+.- -+. -.+
T Consensus 136 ~Dinp~mL~vgkqRa~~~~l~~~~~~~w--~~~dA---------E~L----------pF-dd~s~D~yTiafGIRN~th~ 193 (296)
T KOG1540|consen 136 LDINPHMLAVGKQRAKKRPLKASSRVEW--VEGDA---------EDL----------PF-DDDSFDAYTIAFGIRNVTHI 193 (296)
T ss_pred EeCCHHHHHHHHHHHhhcCCCcCCceEE--EeCCc---------ccC----------CC-CCCcceeEEEecceecCCCH
Confidence 699999999999999887776432 444 34554 111 23 36789987642 222 123
Q ss_pred HHHHHHHhhccCCCcEEEE
Q 041970 302 LQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 302 ~~L~p~i~~~LkpGG~LIl 320 (327)
.+-+.+.+++|||||+|.+
T Consensus 194 ~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 194 QKALREAYRVLKPGGRFSC 212 (296)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 4566788999999999874
No 174
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.78 E-value=0.0054 Score=56.87 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=55.7
Q ss_pred eeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEE-EEecCCCCCCCCccccccchhhhcccc
Q 041970 219 LFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMK-LHLVPDRTFPSSMNERVDGIVEYLSSH 278 (327)
Q Consensus 219 ~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~-v~~~~~d~~~~~~~g~~~~l~~~~~~~ 278 (327)
.||+||| +|-++.+-+.|.+-++.|.- .++. +.+..+.-+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l------------------ 138 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADGENL------------------ 138 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeechhcC------------------
Confidence 5799998 99999999999999988843 2344 433222211
Q ss_pred cccCCCCCCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEEE
Q 041970 279 KIRGISETEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 279 ~~~~~~~~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LIl 320 (327)
..+ ++++||.||+-... .--.+.+..+.++|||||++|+
T Consensus 139 --~~l-~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 139 --PQL-ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred --ccc-ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 112 37899999987642 2234567899999999999987
No 175
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.77 E-value=0.009 Score=55.55 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=59.9
Q ss_pred HHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970 207 LLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE 266 (327)
Q Consensus 207 Le~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g 266 (327)
|+.+..+++.|.++.|+|| .|+.+-.++.|..|++.|++. ++++++. +|.+
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~--~dgl------ 77 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRL--GDGL------ 77 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEec--cCCc------
Confidence 5677788889999999999 999999999999999999997 7888863 5542
Q ss_pred cccchhhhcccccccCCCCCCCeeEEE-EcCChHHHHHHHHHHhhccC
Q 041970 267 RVDGIVEYLSSHKIRGISETEEYDVVI-ANILLNPLLQLADHIVSYAK 313 (327)
Q Consensus 267 ~~~~l~~~~~~~~~~~~~~~~~fDlVv-ANIla~vL~~L~p~i~~~Lk 313 (327)
..+..+..+|+|+ |-.=...+..++.+-.+.|+
T Consensus 78 --------------~~l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 78 --------------AVLELEDEIDVIVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred --------------cccCccCCcCEEEEeCCcHHHHHHHHHHhhhhhc
Confidence 1232344677664 55444444455555444444
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0078 Score=55.81 Aligned_cols=92 Identities=21% Similarity=0.355 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCC--------CCCcEEEE
Q 041970 204 KLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNI--------GPKKMKLH 253 (327)
Q Consensus 204 ~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv--------~~~~v~v~ 253 (327)
.-.++.|+.++++|.+.||+|+ ||.-|+.|+.+++|+..--- +..++.+
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i- 148 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI- 148 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE-
Confidence 4578999999999999999999 89999999999999876531 1122333
Q ss_pred ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
+.||.. ...++..+||.|.+---+.. +-..+...|++||++++
T Consensus 149 -vvGDgr--------------------~g~~e~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 149 -VVGDGR--------------------KGYAEQAPYDAIHVGAAASE---LPQELLDQLKPGGRLLI 191 (237)
T ss_pred -EeCCcc--------------------ccCCccCCcceEEEccCccc---cHHHHHHhhccCCeEEE
Confidence 245541 12234679999998844332 33455667888888775
No 177
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.68 E-value=0.0042 Score=61.15 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=56.4
Q ss_pred cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
..++.|||||| ||.+..| +.|++.++.|+++ +.|++. +|.. .++
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~-~ii~vi--~gkv---------Edi---- 121 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLE-DVITVI--KGKV---------EDI---- 121 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCcc-ceEEEe--ecce---------EEE----
Confidence 46889999999 9988877 9999999999998 667764 3443 332
Q ss_pred ccccccCCCCCCCeeEEEEcCChH------HHHHHHHHHhhccCCCcEEE
Q 041970 276 SSHKIRGISETEEYDVVIANILLN------PLLQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~------vL~~L~p~i~~~LkpGG~LI 319 (327)
.+ +.++.|+|++-=..- -|...+-.--+.|+|||.++
T Consensus 122 ------~L-P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 122 ------EL-PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ------ec-CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 12 247999999874322 22223334458899999754
No 178
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.019 Score=56.88 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970 201 ATTKLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR 258 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d 258 (327)
+..+++...|. .++|.+|||+.. +|+|+.-++..++|+++-|+.+ +.+.. .|
T Consensus 143 ~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n--v~~~~--~d 216 (355)
T COG0144 143 EASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN--VIVVN--KD 216 (355)
T ss_pred HHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc--eEEEe--cc
Confidence 44566665655 578999999988 8999999999999999999873 44332 22
Q ss_pred CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccC
Q 041970 259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAK 313 (327)
Q Consensus 259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~Lk 313 (327)
.. ...+ .....++||.|+.... +..-.+|+....+.||
T Consensus 217 ~~------~~~~-----------~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk 279 (355)
T COG0144 217 AR------RLAE-----------LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK 279 (355)
T ss_pred cc------cccc-----------cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 10 0000 1111336999998853 2445678889999999
Q ss_pred CCcEEEEee
Q 041970 314 PGAVVGISG 322 (327)
Q Consensus 314 pGG~LIlSG 322 (327)
|||+|+.|-
T Consensus 280 ~GG~LVYST 288 (355)
T COG0144 280 PGGVLVYST 288 (355)
T ss_pred CCCEEEEEc
Confidence 999999884
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.58 E-value=0.0067 Score=55.86 Aligned_cols=98 Identities=21% Similarity=0.360 Sum_probs=68.8
Q ss_pred cccCCCchhhHHHHH-HHHHhhh--cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCc
Q 041970 193 LAFGTGEHATTKLCL-LLLRSLI--KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKK 249 (327)
Q Consensus 193 ~AFGTG~H~TT~lcL-e~Le~~~--~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~ 249 (327)
..|..+.+..++... ..+.+.. .+.++|+|||. .|. |..++.|++ .+|
T Consensus 74 ~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~r 144 (241)
T PF00891_consen 74 KRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADR 144 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTT
T ss_pred HHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccc
Confidence 347777788888777 6655543 34568999999 897 888888888 267
Q ss_pred EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEE-cCCh----HHHHHHHHHHhhccCCC--cEEEEee
Q 041970 250 MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA-NILL----NPLLQLADHIVSYAKPG--AVVGISG 322 (327)
Q Consensus 250 v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpG--G~LIlSG 322 (327)
+++. .+|.+ + .+ .. +|+++. |++. +-...++..+++.|+|| |+|++..
T Consensus 145 v~~~--~gd~f--------~------------~~--P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 145 VEFV--PGDFF--------D------------PL--PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEEE--ES-TT--------T------------CC--SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred cccc--cccHH--------h------------hh--cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 8874 57763 1 12 33 998865 6663 45677899999999999 9988876
Q ss_pred cc
Q 041970 323 IL 324 (327)
Q Consensus 323 Il 324 (327)
.+
T Consensus 200 ~~ 201 (241)
T PF00891_consen 200 MV 201 (241)
T ss_dssp EE
T ss_pred ec
Confidence 55
No 180
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.57 E-value=0.0025 Score=58.97 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=56.3
Q ss_pred HHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHH-HHHHhcCCC---------CCcEEEEecCC
Q 041970 207 LLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAH-QNAALNNIG---------PKKMKLHLVPD 257 (327)
Q Consensus 207 Le~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~-eNa~lNgv~---------~~~v~v~~~~~ 257 (327)
.++++.. .+++.+||+.|| +|+++.||+.|. +|.....+. ..+|++. .+
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~--~g 104 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY--CG 104 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE--ES
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE--Ec
Confidence 3444442 345679999999 999999999984 343211111 1234554 46
Q ss_pred CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc-----CChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970 258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-----Ila~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
|.+ ++. ....++||+|.== |..+.=.+.+..+.++|+|||.+++-.+
T Consensus 105 DfF---------~l~----------~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 105 DFF---------ELP----------PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp -TT---------TGG----------GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred ccc---------cCC----------hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 764 110 0113579999732 2223334678889999999999655544
No 181
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.52 E-value=0.027 Score=54.58 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=57.0
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------H
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------N 299 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------~ 299 (327)
.|.+|..|+..++-++.+|+. +.+++. ++|+++ .+.+ ..+ ..+.++++.--+. +
T Consensus 167 rDys~~Nv~~g~~li~~~gL~-~i~~f~--~~dAfd------~~~l---------~~l--~p~P~l~iVsGL~ElF~Dn~ 226 (311)
T PF12147_consen 167 RDYSPINVEKGRALIAERGLE-DIARFE--QGDAFD------RDSL---------AAL--DPAPTLAIVSGLYELFPDND 226 (311)
T ss_pred EeCCHHHHHHHHHHHHHcCCc-cceEEE--ecCCCC------HhHh---------hcc--CCCCCEEEEecchhhCCcHH
Confidence 899999999999999999998 555764 688751 1111 112 3456887765543 3
Q ss_pred HHHHHHHHHhhccCCCcEEEEeec
Q 041970 300 PLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 300 vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
.+...+..+...+.|||+||..|.
T Consensus 227 lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 227 LVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCC
Confidence 455678889999999999999884
No 182
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0047 Score=54.43 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHhhh--cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970 207 LLLLRSLI--KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN 265 (327)
Q Consensus 207 Le~Le~~~--~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~ 265 (327)
+..+.... -.|++++|+|| +||||.|++.++.|++.-.+..+ +. +.+..
T Consensus 37 ~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqid---lL--qcdil----- 106 (185)
T KOG3420|consen 37 LYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQID---LL--QCDIL----- 106 (185)
T ss_pred HHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhh---ee--eeecc-----
Confidence 34444432 36899999999 99999999999999998877633 21 23331
Q ss_pred ccccchhhhcccccccCCCCCCCeeEEEEcCCh
Q 041970 266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILL 298 (327)
Q Consensus 266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla 298 (327)
++ .. ..+.||.+|-|+..
T Consensus 107 ----dl----------e~-~~g~fDtaviNppF 124 (185)
T KOG3420|consen 107 ----DL----------EL-KGGIFDTAVINPPF 124 (185)
T ss_pred ----ch----------hc-cCCeEeeEEecCCC
Confidence 11 11 25789999999864
No 183
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.49 E-value=0.01 Score=55.73 Aligned_cols=58 Identities=14% Similarity=0.383 Sum_probs=41.6
Q ss_pred cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
.++++|||+|| +|+|+.+++.+++|++. . .++++. .+|..
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii--~~D~~---------------- 85 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A--GNVEII--EGDAL---------------- 85 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C--CCEEEE--Eeccc----------------
Confidence 46788999999 99999999999998854 2 346654 45642
Q ss_pred cccccCCCCCCCeeEEEEcCChHH
Q 041970 277 SHKIRGISETEEYDVVIANILLNP 300 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla~v 300 (327)
.+. ...||.|++|+...+
T Consensus 86 -----~~~-~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 86 -----KVD-LPEFNKVVSNLPYQI 103 (258)
T ss_pred -----cCC-chhceEEEEcCCccc
Confidence 111 235899999987653
No 184
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.43 E-value=0.024 Score=53.07 Aligned_cols=92 Identities=28% Similarity=0.404 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHhhhcC--CCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 200 HATTKLCLLLLRSLIKG--GELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 200 H~TT~lcLe~Le~~~~~--g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
|+-+.-|||+|. +.+ ..-|||||| +||+|.+++.|.+ -+..| + +-+ +|.
T Consensus 34 ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e~eg---d-lil----~DM 102 (270)
T KOG1541|consen 34 AEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-RELEG---D-LIL----CDM 102 (270)
T ss_pred HHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hhhhc---C-eee----eec
Confidence 455777777776 333 357999999 9999999999987 22221 2 211 232
Q ss_pred CCCCccccccchhhhcccccccCCCCCCCeeEEEE--------cCC------hHHHHHHHHHHhhccCCCcEEEEe
Q 041970 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA--------NIL------LNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA--------NIl------a~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
| +.+ ++ ..+.||-+++ |-. ..-|..++..++..|++|++.++-
T Consensus 103 ------G--~Gl----------pf-rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 103 ------G--EGL----------PF-RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ------C--CCC----------CC-CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 1 011 12 3688998764 321 234566778899999999998763
No 185
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.42 E-value=0.012 Score=55.69 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=43.3
Q ss_pred hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
+.+|++|||+|| +|+|+.+++.+++|+.. .++++. .+|.. ++
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i--~~D~~---------~~---- 99 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE-----DNLTII--EGDAL---------KV---- 99 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc-----CceEEE--EChhh---------cC----
Confidence 356788999999 99999999999998742 245554 45642 10
Q ss_pred ccccccCCCCCCCeeEEEEcCChHHHHHHHHH
Q 041970 276 SSHKIRGISETEEYDVVIANILLNPLLQLADH 307 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~ 307 (327)
.. ....+|.||+|+...+-..++-.
T Consensus 100 ------~~-~~~~~~~vv~NlPY~iss~ii~~ 124 (272)
T PRK00274 100 ------DL-SELQPLKVVANLPYNITTPLLFH 124 (272)
T ss_pred ------CH-HHcCcceEEEeCCccchHHHHHH
Confidence 01 01115999999986554444333
No 186
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.42 E-value=0.0094 Score=54.34 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=26.8
Q ss_pred CCCeeEEEE-cCC----hHHHHHHHHHHhhccCCCcEEEEe
Q 041970 286 TEEYDVVIA-NIL----LNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 286 ~~~fDlVvA-NIl----a~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.++||+|+| |.+ ...-.+++..+.+.|+|||+|++.
T Consensus 134 ~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 134 FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp ---EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 678999999 554 244567899999999999999874
No 187
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.31 E-value=0.015 Score=59.98 Aligned_cols=78 Identities=22% Similarity=0.223 Sum_probs=43.9
Q ss_pred hcCceEEEcCcEE--EEcCCCC---CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHH
Q 041970 163 ESFHPVEVTKGLW--IVPEWNV---QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAH 237 (327)
Q Consensus 163 ~~f~P~~vg~~l~--I~P~W~~---~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~ 237 (327)
++|.|..|.+.++ +.+.-.. ....-.+||+ .|||.= ...+++.+...-.....-+++=++|||+.+++.|+
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~--cGsG~f--l~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPC--CGDGRL--IAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCC--CCccHH--HHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 4677777776543 2221110 0223468997 477743 22223322211000012367777999999999999
Q ss_pred HHHHhcC
Q 041970 238 QNAALNN 244 (327)
Q Consensus 238 eNa~lNg 244 (327)
.|+...+
T Consensus 81 ~~l~~~~ 87 (524)
T TIGR02987 81 KLLGEFA 87 (524)
T ss_pred HHHhhcC
Confidence 9998776
No 188
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.21 E-value=0.012 Score=56.57 Aligned_cols=98 Identities=24% Similarity=0.375 Sum_probs=57.5
Q ss_pred cCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHH-hcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970 195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAA-LNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE 273 (327)
Q Consensus 195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~-lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~ 273 (327)
-|+|-=|.|.+||.. ++. .+..|. |+|+||.|++.|++=++ ..|++ .++.++. +|.. +..
T Consensus 127 IGSGPLPlT~i~la~--~~~-~~~~v~---~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~--~d~~---------~~~- 187 (276)
T PF03059_consen 127 IGSGPLPLTSIVLAK--QHG-PGARVH---NIDIDPEANELARRLVASDLGLS-KRMSFIT--ADVL---------DVT- 187 (276)
T ss_dssp E---SS-HHHHHHH----HT-T--EEE---EEESSHHHHHHHHHHHH---HH--SSEEEEE--S-GG---------GG--
T ss_pred EcCCCcchHHHHHHH--HhC-CCCeEE---EEeCCHHHHHHHHHHHhhccccc-CCeEEEe--cchh---------ccc-
Confidence 499999999999872 221 111111 28999999999998766 56776 6788763 4431 110
Q ss_pred hcccccccCCCCCCCeeEEEEcCChH----HHHHHHHHHhhccCCCcEEEEe
Q 041970 274 YLSSHKIRGISETEEYDVVIANILLN----PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 274 ~~~~~~~~~~~~~~~fDlVvANIla~----vL~~L~p~i~~~LkpGG~LIlS 321 (327)
. .-..||+|+-..+.+ .=.+++..+.++++||+.+++-
T Consensus 188 ---------~-dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 188 ---------Y-DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ---------G-G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ---------c-ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 0 135799998777776 7778999999999999988763
No 189
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.14 E-value=0.025 Score=51.92 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=46.6
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCee-EEEEcCChHHHHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYD-VVIANILLNPLLQL 304 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fD-lVvANIla~vL~~L 304 (327)
+||.+..++.|++|++.+|+. +++++.+ +|.+ . .+.+.+..| +|+|-.=...+..+
T Consensus 27 ~DI~~gpL~~A~~~i~~~~l~-~~i~~rl--gdGL--------~------------~l~~~e~~d~ivIAGMGG~lI~~I 83 (205)
T PF04816_consen 27 VDINPGPLEKAKENIAKYGLE-DRIEVRL--GDGL--------E------------VLKPGEDVDTIVIAGMGGELIIEI 83 (205)
T ss_dssp EESSHHHHHHHHHHHHHTT-T-TTEEEEE---SGG--------G------------G--GGG---EEEEEEE-HHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHcCCc-ccEEEEE--CCcc--------c------------ccCCCCCCCEEEEecCCHHHHHHH
Confidence 999999999999999999997 7888864 5542 1 122233255 55677766777777
Q ss_pred HHHHhhccCCCcEEEEe
Q 041970 305 ADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 305 ~p~i~~~LkpGG~LIlS 321 (327)
+......++....|||.
T Consensus 84 Le~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 84 LEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp HHHTGGGGTT--EEEEE
T ss_pred HHhhHHHhccCCeEEEe
Confidence 77766666665677764
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.12 E-value=0.028 Score=52.46 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=45.1
Q ss_pred cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
.++++|||+|| +|+|+.+++.+++|+.. . .++++. .+|.. +
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~-~~v~v~--~~D~~---------~------ 86 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---Y-ERLEVI--EGDAL---------K------ 86 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---C-CcEEEE--ECchh---------c------
Confidence 46789999999 99999999999988743 1 345553 45542 0
Q ss_pred cccccCCCCCCCee---EEEEcCChHHHHHHHHHHh
Q 041970 277 SHKIRGISETEEYD---VVIANILLNPLLQLADHIV 309 (327)
Q Consensus 277 ~~~~~~~~~~~~fD---lVvANIla~vL~~L~p~i~ 309 (327)
.. ...|| +|++|+..++-..++-.+.
T Consensus 87 ------~~-~~~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 87 ------VD-LPDFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred ------CC-hhHcCCcceEEEcCChhhHHHHHHHHh
Confidence 10 12456 9999998776555544444
No 191
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.10 E-value=0.0053 Score=59.20 Aligned_cols=35 Identities=14% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCCeeEEEE-cCCh----HHHHHHHHHHhhccCCCcEEEE
Q 041970 286 TEEYDVVIA-NILL----NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 286 ~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpGG~LIl 320 (327)
.++||+|+| |.+. ..-.+++..+.+.|+|||+|++
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 468999999 5542 3466789999999999998876
No 192
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.06 E-value=0.043 Score=54.24 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=79.9
Q ss_pred EccC--cccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCC
Q 041970 189 LNPG--LAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGP 247 (327)
Q Consensus 189 idPG--~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~ 247 (327)
.+|. -.|++|. +|-+..++--|.+. ++|+.|||==| .|||..+++-|+.|.+.-+++.
T Consensus 168 r~~~kRPf~~p~s~~P~lAR~mVNLa~v-~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~ 246 (347)
T COG1041 168 RDPEKRPFFRPGSMDPRLARAMVNLARV-KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED 246 (347)
T ss_pred cCcccCCccCcCCcCHHHHHHHHHHhcc-ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc
Confidence 4443 3577776 88888888888764 78999999655 9999999999999999999862
Q ss_pred CcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhccCCC
Q 041970 248 KKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYAKPG 315 (327)
Q Consensus 248 ~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~LkpG 315 (327)
+.+.. ..|+. .+ ++. ...+|.|+..+.. ..+.+.+..+.+.|++|
T Consensus 247 --~~~~~-~~Da~---------~l----------pl~-~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 247 --YPVLK-VLDAT---------NL----------PLR-DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred --eeEEE-ecccc---------cC----------CCC-CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 43331 12331 11 121 2359999999753 34667788899999999
Q ss_pred cEEEEee
Q 041970 316 AVVGISG 322 (327)
Q Consensus 316 G~LIlSG 322 (327)
|++++..
T Consensus 304 G~~vf~~ 310 (347)
T COG1041 304 GRIVFAA 310 (347)
T ss_pred cEEEEec
Confidence 9988754
No 193
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.05 E-value=0.031 Score=53.11 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=33.3
Q ss_pred CCeeEEEEcCChH-------HHHHHHHHHhhccCCCcEEEEeeccCC
Q 041970 287 EEYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGILSE 326 (327)
Q Consensus 287 ~~fDlVvANIla~-------vL~~L~p~i~~~LkpGG~LIlSGIl~~ 326 (327)
++||+|++-...+ .....+..+.++|||||.||+.|++..
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 4699999987653 456788899999999999999999864
No 194
>PRK00536 speE spermidine synthase; Provisional
Probab=95.99 E-value=0.033 Score=53.11 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHH
Q 041970 226 VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ 303 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~ 303 (327)
||||+..|+.+++-.-. .+.++.|+++.. .. . . ...++||+|+...+.. ..
T Consensus 100 VeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~------------~---------~-~~~~~fDVIIvDs~~~--~~ 152 (262)
T PRK00536 100 VQADEKILDSFISFFPHFHEVKNNKNFTHAK---QL------------L---------D-LDIKKYDLIICLQEPD--IH 152 (262)
T ss_pred EECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hh------------h---------h-ccCCcCCEEEEcCCCC--hH
Confidence 99999999999993221 135556777752 11 0 0 0136899999996543 34
Q ss_pred HHHHHhhccCCCcEEEE
Q 041970 304 LADHIVSYAKPGAVVGI 320 (327)
Q Consensus 304 L~p~i~~~LkpGG~LIl 320 (327)
....+.+.|+|||.++.
T Consensus 153 fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 153 KIDGLKRMLKEDGVFIS 169 (262)
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 55778999999999886
No 195
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.93 E-value=0.041 Score=54.29 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=43.4
Q ss_pred ceeEEEccCcccCCCchhhHHHHHHHHHhhhcC-CCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970 184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKG-GELFLDYGT------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~-g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg 244 (327)
...+.+.|+-.|=. ...-+.-.++++.+++.. +.+|||+-| ||+++.||+.|++|+++|+
T Consensus 164 ~~~~~~~~~sFfQv-N~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 164 GLSFRISPGSFFQV-NPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp TEEEEEETTS---S-BHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCccC-cHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcC
Confidence 35677888876655 344444455555555432 348999999 9999999999999999999
Q ss_pred CCCCcEEEE
Q 041970 245 IGPKKMKLH 253 (327)
Q Consensus 245 v~~~~v~v~ 253 (327)
+. ++++.
T Consensus 243 i~--n~~f~ 249 (352)
T PF05958_consen 243 ID--NVEFI 249 (352)
T ss_dssp ----SEEEE
T ss_pred CC--cceEE
Confidence 96 46664
No 196
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.81 E-value=0.017 Score=54.52 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=50.8
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc-----CChHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN-----ILLNP 300 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-----Ila~v 300 (327)
+|.+|.||+..++|...+. .++... ..|+. + +++. ... ..+.+|+|++- |..+-
T Consensus 103 cDfsp~Ai~~vk~~~~~~e---~~~~af--v~Dlt-----~--~~~~--------~~~-~~~svD~it~IFvLSAi~pek 161 (264)
T KOG2361|consen 103 CDFSPRAIELVKKSSGYDE---SRVEAF--VWDLT-----S--PSLK--------EPP-EEGSVDIITLIFVLSAIHPEK 161 (264)
T ss_pred cCCChHHHHHHHhccccch---hhhccc--ceecc-----c--hhcc--------CCC-CcCccceEEEEEEEeccChHH
Confidence 8999999999999987664 222221 12331 0 1111 112 36789988765 44566
Q ss_pred HHHHHHHHhhccCCCcEEEEe
Q 041970 301 LLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 301 L~~L~p~i~~~LkpGG~LIlS 321 (327)
....++.+.++|||||.|++.
T Consensus 162 ~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 162 MQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred HHHHHHHHHHHhCCCcEEEEe
Confidence 777899999999999999986
No 197
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.76 E-value=0.019 Score=54.12 Aligned_cols=66 Identities=27% Similarity=0.440 Sum_probs=46.5
Q ss_pred CCeeeeeee--------------------ecCCHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALN-NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
+-++||||+ .|||+.++..|+.|+..| +++ ..+++.. +.|- +.+.
T Consensus 79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~-qk~~---------~~if--- 144 (292)
T COG3129 79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRR-QKDS---------DAIF--- 144 (292)
T ss_pred ceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEe-ccCc---------cccc---
Confidence 448999998 999999999999999999 776 4566653 2221 0010
Q ss_pred ccccccCC-CCCCCeeEEEEcCChHHH
Q 041970 276 SSHKIRGI-SETEEYDVVIANILLNPL 301 (327)
Q Consensus 276 ~~~~~~~~-~~~~~fDlVvANIla~vL 301 (327)
..+ ...+.||.++||+..+--
T Consensus 145 -----~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 145 -----NGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred -----cccccccceeeeEecCCCcchh
Confidence 111 126899999999986543
No 198
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.59 E-value=0.037 Score=51.96 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=69.9
Q ss_pred EEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC-
Q 041970 187 IILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN- 244 (327)
Q Consensus 187 I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg- 244 (327)
+.||-.+-+.+-. +.-+++....-.-.....++||=+|- |||||..++.|++-.....
T Consensus 46 l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~ 125 (246)
T PF01564_consen 46 LVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE 125 (246)
T ss_dssp EEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT
T ss_pred EEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc
Confidence 3355555444333 44444444333222334678888886 9999999999999766532
Q ss_pred -CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCC-CeeEEEEcCChH-------HHHHHHHHHhhccCCC
Q 041970 245 -IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETE-EYDVVIANILLN-------PLLQLADHIVSYAKPG 315 (327)
Q Consensus 245 -v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~-~fDlVvANIla~-------vL~~L~p~i~~~LkpG 315 (327)
....|++++. +|.. ..++ .. .+ +||+|+..+... .-.+....+.++|+||
T Consensus 126 ~~~d~r~~i~~--~Dg~---------~~l~--------~~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~ 184 (246)
T PF01564_consen 126 GLDDPRVRIII--GDGR---------KFLK--------ET--QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD 184 (246)
T ss_dssp TGGSTTEEEEE--STHH---------HHHH--------TS--SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred ccCCCceEEEE--hhhH---------HHHH--------hc--cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence 3346788763 4531 1221 11 33 899999987641 1256778899999999
Q ss_pred cEEEEee
Q 041970 316 AVVGISG 322 (327)
Q Consensus 316 G~LIlSG 322 (327)
|.+++-.
T Consensus 185 Gv~v~~~ 191 (246)
T PF01564_consen 185 GVLVLQA 191 (246)
T ss_dssp EEEEEEE
T ss_pred cEEEEEc
Confidence 9998743
No 199
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.54 E-value=0.034 Score=54.97 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=56.4
Q ss_pred CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
.|+.|||||| |+-+.. .+.|+.-++-|.+. +||.|. +|.. +
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M-AqyA~~Lv~~N~~~-~rItVI--~GKi---------E------- 236 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM-AQYARKLVASNNLA-DRITVI--PGKI---------E------- 236 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHH-HHHHHHHHhcCCcc-ceEEEc--cCcc---------c-------
Confidence 4678999999 776555 48899999999887 788864 4543 2
Q ss_pred cccccCCCCCCCeeEEEEcCChHHH--HHHHH---HHhhccCCCcEEE
Q 041970 277 SHKIRGISETEEYDVVIANILLNPL--LQLAD---HIVSYAKPGAVVG 319 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla~vL--~~L~p---~i~~~LkpGG~LI 319 (327)
.++..++.|+|++-+..-.| ++|+. ..+++|+|.|..+
T Consensus 237 -----dieLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 237 -----DIELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred -----cccCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 23347899999998765333 23433 3568999999754
No 200
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.48 E-value=0.042 Score=47.79 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=50.3
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC--------
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------- 297 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------- 297 (327)
+||.++|++.+++..+.+++. +++++.. ..- ..+. ..+ +.++.|+++-|+=
T Consensus 5 FDIQ~~Ai~~T~~rL~~~~~~-~~v~li~--~sH---------e~l~--------~~i-~~~~v~~~iFNLGYLPggDk~ 63 (140)
T PF06962_consen 5 FDIQEEAIENTRERLEEAGLE-DRVTLIL--DSH---------ENLD--------EYI-PEGPVDAAIFNLGYLPGGDKS 63 (140)
T ss_dssp EES-HHHHHHHHHHHHHTT-G-SGEEEEE--S-G---------GGGG--------GT---S--EEEEEEEESB-CTS-TT
T ss_pred EECHHHHHHHHHHHHHhcCCC-CcEEEEE--CCH---------HHHH--------hhC-ccCCcCEEEEECCcCCCCCCC
Confidence 799999999999999999987 6888763 111 1111 112 1258999999962
Q ss_pred ----hHHHHHHHHHHhhccCCCcEEEEe
Q 041970 298 ----LNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 298 ----a~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
++.-...+..+.++|+|||.+++-
T Consensus 64 i~T~~~TTl~Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 64 ITTKPETTLKALEAALELLKPGGIITIV 91 (140)
T ss_dssp SB--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcCcHHHHHHHHHHHHhhccCCEEEEE
Confidence 244455677888999999998764
No 201
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.90 E-value=0.093 Score=50.23 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=29.1
Q ss_pred CCCeeEEEE-cCC----hHHHHHHHHHHhhccCCCcEEEE
Q 041970 286 TEEYDVVIA-NIL----LNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 286 ~~~fDlVvA-NIl----a~vL~~L~p~i~~~LkpGG~LIl 320 (327)
.++||+|+| |.+ ...-.+++..++..|+|||+|++
T Consensus 200 ~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 200 LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 567999999 754 35566799999999999999876
No 202
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.82 E-value=0.18 Score=52.25 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=51.9
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhh--hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSL--IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~--~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg 244 (327)
..+.|.||-.|=|-+|..- ..-..+.+. +..++.++|+-| |+++|+||+-|++||+.||
T Consensus 351 ltF~iSp~AFFQ~Nt~~ae-vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ng 429 (534)
T KOG2187|consen 351 LTFRISPGAFFQTNTSAAE-VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQING 429 (534)
T ss_pred eEEEECCchhhccCcHHHH-HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcC
Confidence 4588999999999988542 222333333 346689999999 9999999999999999999
Q ss_pred CCCCcEEEEe
Q 041970 245 IGPKKMKLHL 254 (327)
Q Consensus 245 v~~~~v~v~~ 254 (327)
+++ .++++
T Consensus 430 isN--a~Fi~ 437 (534)
T KOG2187|consen 430 ISN--ATFIV 437 (534)
T ss_pred ccc--eeeee
Confidence 974 56654
No 203
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.48 E-value=0.026 Score=50.26 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=24.9
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~ 259 (327)
||+||.-++.|+.|++.-|+. +++++. .+|.
T Consensus 27 idid~~~~~~a~hNa~vYGv~-~~I~~i--~gD~ 57 (163)
T PF09445_consen 27 IDIDPERLECAKHNAEVYGVA-DNIDFI--CGDF 57 (163)
T ss_dssp EES-HHHHHHHHHHHHHTT-G-GGEEEE--ES-H
T ss_pred EECCHHHHHHHHHHHHHcCCC-CcEEEE--eCCH
Confidence 999999999999999999997 788875 5665
No 204
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.36 E-value=0.089 Score=50.68 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=61.9
Q ss_pred CCCchhhHHHHHHHHH--hhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcC--CCCCcEEEEecCCCCCCCCccccccch
Q 041970 196 GTGEHATTKLCLLLLR--SLIKGGELFLDYGTVDIDPQVIKSAHQNAALNN--IGPKKMKLHLVPDRTFPSSMNERVDGI 271 (327)
Q Consensus 196 GTG~H~TT~lcLe~Le--~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l 271 (327)
|.|.=.|+|-|++... +..- |||||..|+.||+-...-. ....|+++.+ +|.. +.
T Consensus 84 GgGdG~tlRevlkh~~ve~i~~----------VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i--~Dg~---------~~ 142 (282)
T COG0421 84 GGGDGGTLREVLKHLPVERITM----------VEIDPAVIELARKYLPEPSGGADDPRVEIII--DDGV---------EF 142 (282)
T ss_pred CCCccHHHHHHHhcCCcceEEE----------EEcCHHHHHHHHHhccCcccccCCCceEEEe--ccHH---------HH
Confidence 3444578888888763 2111 8999999999998654322 2235777753 4431 22
Q ss_pred hhhcccccccCCCCCCCeeEEEEcCChH--H-----HHHHHHHHhhccCCCcEEEEe
Q 041970 272 VEYLSSHKIRGISETEEYDVVIANILLN--P-----LLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 272 ~~~~~~~~~~~~~~~~~fDlVvANIla~--v-----L~~L~p~i~~~LkpGG~LIlS 321 (327)
+. .. ..+||+|+.+-.-. + -......+.+.|+++|+++.-
T Consensus 143 v~--------~~--~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 143 LR--------DC--EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HH--------hC--CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 21 11 34899999986532 2 246778899999999998764
No 205
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.33 E-value=0.019 Score=54.20 Aligned_cols=87 Identities=23% Similarity=0.324 Sum_probs=59.1
Q ss_pred hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970 214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274 (327)
Q Consensus 214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~ 274 (327)
.+.|.+|||.++ |+.||..++.|.-|=--.++...++++ ..||+. ++++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i--ilGD~~---------e~V~- 199 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKI--ILGDAY---------EVVK- 199 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEE--ecccHH---------HHHh-
Confidence 456999999988 899999998876663333332223444 356652 2321
Q ss_pred cccccccCCCCCCCeeEEEEcCC----hHHH--HHHHHHHhhccCCCcEEEE
Q 041970 275 LSSHKIRGISETEEYDVVIANIL----LNPL--LQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 275 ~~~~~~~~~~~~~~fDlVvANIl----a~vL--~~L~p~i~~~LkpGG~LIl 320 (327)
.+ .++.||+|+-.+. |..| .++-.++.+.|||||+++-
T Consensus 200 -------~~-~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 200 -------DF-DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred -------cC-CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 23 3678999999985 3333 4577899999999999863
No 206
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.27 E-value=0.33 Score=44.56 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=45.5
Q ss_pred hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHH-------hcCCCCCcEEEEecCCCCCCCCccc
Q 041970 214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFPSSMNE 266 (327)
Q Consensus 214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~-------lNgv~~~~v~v~~~~~d~~~~~~~g 266 (327)
+++++.++|+|| |++.+...+.|+++.+ ..|....++.+ ..+|.+ +.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l--~~gdfl----~~ 113 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL--IHGDFL----DP 113 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE--ECS-TT----TH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee--eccCcc----cc
Confidence 567889999999 9999999988876543 23443344554 367753 10
Q ss_pred cccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHhhccCCCcEEEE
Q 041970 267 RVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG~LIl 320 (327)
+..+ .+ -...|+|++|-.. +.+..-+..+...||+|.++|.
T Consensus 114 ---~~~~--------~~--~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 114 ---DFVK--------DI--WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---HHHH--------HH--GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ---HhHh--------hh--hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 1100 00 1357999998542 3444444566677899887764
No 207
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.25 E-value=0.081 Score=47.96 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=63.2
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN 265 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~ 265 (327)
.|.||-| ||.|.|-.. +..+ .++..+|- +|+....+..|...+...++. ++.+. .+|+.
T Consensus 19 ~l~lEIG--~G~G~~l~~-----~A~~--~Pd~n~iG---iE~~~~~v~~a~~~~~~~~l~--Nv~~~--~~da~----- 77 (195)
T PF02390_consen 19 PLILEIG--CGKGEFLIE-----LAKR--NPDINFIG---IEIRKKRVAKALRKAEKRGLK--NVRFL--RGDAR----- 77 (195)
T ss_dssp EEEEEET---TTSHHHHH-----HHHH--STTSEEEE---EES-HHHHHHHHHHHHHHTTS--SEEEE--ES-CT-----
T ss_pred CeEEEec--CCCCHHHHH-----HHHH--CCCCCEEE---EecchHHHHHHHHHHHhhccc--ceEEE--EccHH-----
Confidence 3667766 677766322 1111 23333322 799999999999999999886 46653 45542
Q ss_pred ccccchhhhcccccccCCCCCCCeeEEEEcCChH-----------HHHHHHHHHhhccCCCcEEEEe
Q 041970 266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----------vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.++. .+.+++..|-|.-|..-. +-..++..+++.|+|||.+.+.
T Consensus 78 ----~~l~--------~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 78 ----ELLR--------RLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ----THHH--------HHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred ----HHHh--------hcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 1111 112357899999997521 2246888999999999998763
No 208
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.22 E-value=0.28 Score=47.29 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
-.|.+.+|+ +++|.+||+-|| +|++..-.+.|++-.+..+++ +.+.+. .-|.+
T Consensus 94 ia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~--hrDVc- 167 (314)
T KOG2915|consen 94 IAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVT--HRDVC- 167 (314)
T ss_pred HHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEE--Eeecc-
Confidence 357777777 789999999999 899999999999999999997 667764 34443
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
..|. .+ ....+|.|+-.+++.-. .+|.+++.||.+|.-++|
T Consensus 168 --~~GF--------------~~-ks~~aDaVFLDlPaPw~--AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 168 --GSGF--------------LI-KSLKADAVFLDLPAPWE--AIPHAAKILKDEGGRLCS 208 (314)
T ss_pred --cCCc--------------cc-cccccceEEEcCCChhh--hhhhhHHHhhhcCceEEe
Confidence 1111 11 25689999999887653 468888899988854443
No 209
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.78 E-value=0.28 Score=46.98 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970 202 TTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF 260 (327)
Q Consensus 202 TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~ 260 (327)
..+++...|. ..+|++|||+.+ .|+++.-++..++|+++-|+. .+.+.. .|.
T Consensus 73 sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v~~~~--~D~- 145 (283)
T PF01189_consen 73 SSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--NVIVIN--ADA- 145 (283)
T ss_dssp HHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--SEEEEE--SHH-
T ss_pred cccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc--eEEEEe--ecc-
Confidence 3556666664 567889999988 999999999999999999986 354431 232
Q ss_pred CCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhcc---
Q 041970 261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYA--- 312 (327)
Q Consensus 261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~L--- 312 (327)
.... .......||.|+.... +..-.+++....+++
T Consensus 146 --------~~~~---------~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~ 208 (283)
T PF01189_consen 146 --------RKLD---------PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNID 208 (283)
T ss_dssp --------HHHH---------HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHH
T ss_pred --------cccc---------ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccc
Confidence 0110 0001346999999853 133456788899999
Q ss_pred -CCCcEEEEe
Q 041970 313 -KPGAVVGIS 321 (327)
Q Consensus 313 -kpGG~LIlS 321 (327)
||||+++.|
T Consensus 209 ~k~gG~lvYs 218 (283)
T PF01189_consen 209 FKPGGRLVYS 218 (283)
T ss_dssp BEEEEEEEEE
T ss_pred ccCCCeEEEE
Confidence 999999987
No 210
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=93.71 E-value=0.18 Score=45.49 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=44.5
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA 305 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~ 305 (327)
+|-...=+..-++=++.=|++ ++++.. +.. ++ .....+||+|+|=-++. +..++
T Consensus 78 vEs~~KK~~FL~~~~~~L~L~--nv~v~~--~R~---------E~------------~~~~~~fd~v~aRAv~~-l~~l~ 131 (184)
T PF02527_consen 78 VESVGKKVAFLKEVVRELGLS--NVEVIN--GRA---------EE------------PEYRESFDVVTARAVAP-LDKLL 131 (184)
T ss_dssp EESSHHHHHHHHHHHHHHT-S--SEEEEE--S-H---------HH------------TTTTT-EEEEEEESSSS-HHHHH
T ss_pred EeCCchHHHHHHHHHHHhCCC--CEEEEE--eee---------cc------------cccCCCccEEEeehhcC-HHHHH
Confidence 887777666666655555664 366542 222 21 01267899999998864 44677
Q ss_pred HHHhhccCCCcEEEE
Q 041970 306 DHIVSYAKPGAVVGI 320 (327)
Q Consensus 306 p~i~~~LkpGG~LIl 320 (327)
+-...++++||++++
T Consensus 132 ~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 132 ELARPLLKPGGRLLA 146 (184)
T ss_dssp HHHGGGEEEEEEEEE
T ss_pred HHHHHhcCCCCEEEE
Confidence 888999999998765
No 211
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.66 E-value=0.21 Score=47.68 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=29.8
Q ss_pred CCCeeEEEE-cCCh---HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 286 TEEYDVVIA-NILL---NPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 286 ~~~fDlVvA-NIla---~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+.+||+|.| |.+- .| ..|+.++.+.|+|+|++|++=.|
T Consensus 149 ~~~fDvIscLNvLDRc~~P-~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRP-LTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred CCceEEEeehhhhhccCCH-HHHHHHHHHHhCCCCEEEEEEEe
Confidence 468999998 6653 33 34788999999999999998554
No 212
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.61 E-value=0.055 Score=50.30 Aligned_cols=33 Identities=21% Similarity=0.494 Sum_probs=25.2
Q ss_pred CCCCeeEEEEcC----ChHHHH--HHHHHHhhccCCCcE
Q 041970 285 ETEEYDVVIANI----LLNPLL--QLADHIVSYAKPGAV 317 (327)
Q Consensus 285 ~~~~fDlVvANI----la~vL~--~L~p~i~~~LkpGG~ 317 (327)
+.++||+|+.-+ +..+-. +|+..+.++|+|+|.
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 367899997654 444443 588999999999999
No 213
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.08 E-value=0.33 Score=48.60 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=48.0
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA 305 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~ 305 (327)
-|+||.|++..++|+++|+++.+++++. ..|+ ..++ ......||+|=-.+...+.. ++
T Consensus 80 NDi~~~a~~~i~~N~~~N~~~~~~~~v~--~~DA---------n~ll----------~~~~~~fD~IDlDPfGSp~p-fl 137 (377)
T PF02005_consen 80 NDISPEAVELIKRNLELNGLEDERIEVS--NMDA---------NVLL----------YSRQERFDVIDLDPFGSPAP-FL 137 (377)
T ss_dssp EES-HHHHHHHHHHHHHCT-SGCCEEEE--ES-H---------HHHH----------CHSTT-EEEEEE--SS--HH-HH
T ss_pred ecCCHHHHHHHHHhHhhccccCceEEEe--hhhH---------HHHh----------hhccccCCEEEeCCCCCccH-hH
Confidence 7999999999999999999985467764 3443 1111 01267899998887755543 56
Q ss_pred HHHhhccCCCcEEEEe
Q 041970 306 DHIVSYAKPGAVVGIS 321 (327)
Q Consensus 306 p~i~~~LkpGG~LIlS 321 (327)
+...+.++.||.|.+.
T Consensus 138 dsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 138 DSALQAVKDGGLLCVT 153 (377)
T ss_dssp HHHHHHEEEEEEEEEE
T ss_pred HHHHHHhhcCCEEEEe
Confidence 6777789999988764
No 214
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.90 E-value=0.54 Score=47.24 Aligned_cols=114 Identities=24% Similarity=0.421 Sum_probs=70.5
Q ss_pred CceeEEEccCcccCCCc----hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHH
Q 041970 183 QATNIILNPGLAFGTGE----HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQ 238 (327)
Q Consensus 183 ~~~~I~idPG~AFGTG~----H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~e 238 (327)
+...++||-|+-|.|-. ||+ +..-.+. .+++-.+||=+|- ||.||.+++.|+.
T Consensus 255 ~d~rLYldG~LQfsTrDe~RYhEs--LV~pals-~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~ 331 (508)
T COG4262 255 DDLRLYLDGGLQFSTRDEYRYHES--LVYPALS-SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASH 331 (508)
T ss_pred CceEEEEcCceeeeechhhhhhhe--eeecccc-cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhh
Confidence 34679999999999853 322 1111111 1233467888887 9999999999998
Q ss_pred HHH---hcC--CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------HHH-HHHH
Q 041970 239 NAA---LNN--IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------NPL-LQLA 305 (327)
Q Consensus 239 Na~---lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------~vL-~~L~ 305 (327)
|.. .|+ .++-|+.+ +..|++ .+ + +. ....||.|+-...- ... .++-
T Consensus 332 ~~vlr~~N~~sf~dpRv~V--v~dDAf-----~w----l--------r~--a~~~fD~vIVDl~DP~tps~~rlYS~eFY 390 (508)
T COG4262 332 ATVLRALNQGSFSDPRVTV--VNDDAF-----QW----L--------RT--AADMFDVVIVDLPDPSTPSIGRLYSVEFY 390 (508)
T ss_pred hhHhhhhccCCccCCeeEE--EeccHH-----HH----H--------Hh--hcccccEEEEeCCCCCCcchhhhhhHHHH
Confidence 754 343 33345554 345543 11 1 11 24589999988642 111 2344
Q ss_pred HHHhhccCCCcEEEE
Q 041970 306 DHIVSYAKPGAVVGI 320 (327)
Q Consensus 306 p~i~~~LkpGG~LIl 320 (327)
..+.++|+++|.++.
T Consensus 391 ~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 391 RLLSRHLAETGLMVV 405 (508)
T ss_pred HHHHHhcCcCceEEE
Confidence 567899999999876
No 215
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=91.71 E-value=0.16 Score=47.37 Aligned_cols=27 Identities=11% Similarity=0.317 Sum_probs=18.4
Q ss_pred CeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 288 EYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 288 ~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
.+|++++-. ..++|.+.+.|+| |.+++
T Consensus 143 ~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 143 TFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 577666433 2368899999999 76653
No 216
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.58 E-value=0.54 Score=45.09 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=52.7
Q ss_pred Ceeeeeee-----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970 218 ELFLDYGT-----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274 (327)
Q Consensus 218 ~~VLDvGc-----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~ 274 (327)
...||+|| ||+||.++..++.-+..|.- .+..+ +.+|+. .-+++++.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~--v~aD~r------~p~~iL~~ 139 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAY--VQADLR------DPEAILAH 139 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEE--EE--TT-------HHHHHCS
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEE--EeCCCC------CHHHHhcC
Confidence 58999999 99999999999988777642 12333 356652 11122210
Q ss_pred cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970 275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
..+. ..+..+++.=+++..++. +-...++..+...|.||.+|++|=+..
T Consensus 140 p~~~--~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 140 PEVR--GLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HHHH--CC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred HHHH--hcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 0000 012225566677766653 234678899999999999999986543
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=91.15 E-value=0.27 Score=45.28 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970 200 HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP 261 (327)
Q Consensus 200 H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~ 261 (327)
|+--...-+++++... +.+.|+|+ ++.||.-.+.|.||...||.. .+++ +.||+.
T Consensus 18 ~eRlavF~~ai~~va~--d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~--n~ev--v~gDA~- 90 (252)
T COG4076 18 VERLAVFTSAIAEVAE--DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV--NWEV--VVGDAR- 90 (252)
T ss_pred HHHHHHHHHHHHHHhh--hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCc--ceEE--Eecccc-
Confidence 4433444445555433 57777777 899999999999999999974 4665 357752
Q ss_pred CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH-----HHHHHHHhhccCCCcEEE
Q 041970 262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL-----LQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL-----~~L~p~i~~~LkpGG~LI 319 (327)
... -+.+|+|+|-.+--.| ...+..+.+.||-.+.+|
T Consensus 91 --------------------~y~-fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 91 --------------------DYD-FENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred --------------------ccc-ccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 121 3578999998764322 234445555677777654
No 218
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=90.84 E-value=0.22 Score=48.99 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.5
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHL 254 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~ 254 (327)
+|||...+..|++|+..|+++ +++.+..
T Consensus 132 teidd~s~~~a~snV~qn~ls-s~ikvV~ 159 (419)
T KOG2912|consen 132 TEIDDMSFNYAKSNVEQNNLS-SLIKVVK 159 (419)
T ss_pred eeccccccchhhccccccccc-cceeeEE
Confidence 899999999999999999998 6676643
No 219
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=90.62 E-value=0.3 Score=46.41 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=36.2
Q ss_pred chhhHHHHHHHHHhhh-------cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970 199 EHATTKLCLLLLRSLI-------KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMK 251 (327)
Q Consensus 199 ~H~TT~lcLe~Le~~~-------~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~ 251 (327)
.|.+|+-=|..|++.. ....+|+|+|| +|||...++.-..=...-++. .++.
T Consensus 81 ~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~ 159 (251)
T PF07091_consen 81 GHASTRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-HDAR 159 (251)
T ss_dssp TSHHHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEE
T ss_pred hccchhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC-ccee
Confidence 4777776666666553 34579999999 999999999998877777765 3344
Q ss_pred E
Q 041970 252 L 252 (327)
Q Consensus 252 v 252 (327)
+
T Consensus 160 v 160 (251)
T PF07091_consen 160 V 160 (251)
T ss_dssp E
T ss_pred E
Confidence 3
No 220
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=90.58 E-value=2.6 Score=41.41 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=62.8
Q ss_pred cCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970 195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274 (327)
Q Consensus 195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~ 274 (327)
+|.|.-.=|++.|+.|++. ++ -.-+=.+||+..+++.|.+++..-..+ .+++.-..+|.. +.+ .
T Consensus 83 LGsG~~~Kt~~LL~aL~~~---~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~--------~~l-~- 146 (319)
T TIGR03439 83 LGSGNLRKVGILLEALERQ---KK-SVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYD--------DGL-A- 146 (319)
T ss_pred ECCCchHHHHHHHHHHHhc---CC-CceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHH--------HHH-h-
Confidence 4555555589999998742 11 111112999999999999998744443 355543344431 110 0
Q ss_pred cccccccCCCCCCCeeEEE------EcCChHHHHHHHHHHhh-ccCCCcEEEE
Q 041970 275 LSSHKIRGISETEEYDVVI------ANILLNPLLQLADHIVS-YAKPGAVVGI 320 (327)
Q Consensus 275 ~~~~~~~~~~~~~~fDlVv------ANIla~vL~~L~p~i~~-~LkpGG~LIl 320 (327)
....... .....+|+ .|....-...++..+++ .|+|||.|++
T Consensus 147 --~l~~~~~--~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 147 --WLKRPEN--RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred --hcccccc--cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 0000000 12345553 56666677788899999 9999999876
No 221
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=90.47 E-value=0.5 Score=45.86 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=31.0
Q ss_pred EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970 187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLH 253 (327)
Q Consensus 187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~ 253 (327)
+.||-+ ||+|.| |...++.+ .+..+|+ ++|.||.|++.|+++++. . +++.+.
T Consensus 22 ~vlD~T--lG~GGh--S~~il~~~----~~~g~Vi---giD~D~~al~~ak~~L~~---~-~ri~~i 73 (296)
T PRK00050 22 IYVDGT--FGGGGH--SRAILERL----GPKGRLI---AIDRDPDAIAAAKDRLKP---F-GRFTLV 73 (296)
T ss_pred EEEEeC--cCChHH--HHHHHHhC----CCCCEEE---EEcCCHHHHHHHHHhhcc---C-CcEEEE
Confidence 455543 777777 33333332 1112222 189999999999998754 2 467764
No 222
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.29 E-value=0.84 Score=42.15 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=24.8
Q ss_pred CCCeeEEEEcCCh-------------HHHHHHHHH-HhhccCCCcEEEEee
Q 041970 286 TEEYDVVIANILL-------------NPLLQLADH-IVSYAKPGAVVGISG 322 (327)
Q Consensus 286 ~~~fDlVvANIla-------------~vL~~L~p~-i~~~LkpGG~LIlSG 322 (327)
..++|+|++.... -.|...+.+ ....|+|||.+++.=
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 4568999976543 223444444 456999999998763
No 223
>PRK04148 hypothetical protein; Provisional
Probab=89.87 E-value=0.54 Score=40.57 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=23.9
Q ss_pred HHHHhhhc--CCCeeeeeee-------------------ecCCHHHHHHHHHH
Q 041970 208 LLLRSLIK--GGELFLDYGT-------------------VDIDPQVIKSAHQN 239 (327)
Q Consensus 208 e~Le~~~~--~g~~VLDvGc-------------------VDIDp~AV~~A~eN 239 (327)
++|.+++. .+++|||||| +|++|.+++.|++|
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 44555442 3468999999 99999998888776
No 224
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.69 E-value=4 Score=38.68 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=47.9
Q ss_pred hhHHHHHHHHH-hhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970 201 ATTKLCLLLLR-SLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF 260 (327)
Q Consensus 201 ~TT~lcLe~Le-~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~ 260 (327)
+||-.=..+|. +....|++||=+|= +|||...++.-++.++..|+. ++.+ .-|+-
T Consensus 28 eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---i~~~--~~DlR 102 (243)
T PF01861_consen 28 ETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---IEAV--HYDLR 102 (243)
T ss_dssp HHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE-----TT
T ss_pred HHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---eEEE--Eeccc
Confidence 33333333333 33346777887776 999999999999999999985 4443 34541
Q ss_pred CCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHhhccCCCc
Q 041970 261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIVSYAKPGA 316 (327)
Q Consensus 261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG 316 (327)
+.+. .. -.++||+++.+++- +-+.-++..-...||..|
T Consensus 103 --------~~LP--------~~--~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 103 --------DPLP--------EE--LRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp --------S-----------TT--TSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred --------ccCC--------HH--HhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 1111 01 15799999999864 334445555566667656
No 225
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=89.33 E-value=1.4 Score=41.23 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=67.4
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN 265 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~ 265 (327)
+|.|+=| ||.|.|-+. + .+....+.=|| ||+-...|..|.+-+...++. ++.+. .+|+
T Consensus 50 pi~lEIG--fG~G~~l~~-----~----A~~nP~~nfiG-iEi~~~~v~~~l~k~~~~~l~--Nlri~--~~DA------ 107 (227)
T COG0220 50 PIVLEIG--FGMGEFLVE-----M----AKKNPEKNFLG-IEIRVPGVAKALKKIKELGLK--NLRLL--CGDA------ 107 (227)
T ss_pred cEEEEEC--CCCCHHHHH-----H----HHHCCCCCEEE-EEEehHHHHHHHHHHHHcCCC--cEEEE--cCCH------
Confidence 5777766 888887322 1 11122233333 899999999999999998884 35553 4564
Q ss_pred ccccchhhhcccccccCCCCCCCeeEEEEcCCh-----------HHHHHHHHHHhhccCCCcEEEEe
Q 041970 266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----------~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.++++ .+.+++..|-|.-|..- -+-..++..+++.|+|||.|.+.
T Consensus 108 ---~~~l~--------~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 108 ---VEVLD--------YLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred ---HHHHH--------hcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 12321 22335689999999751 12345788999999999998764
No 226
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=89.31 E-value=1.1 Score=42.66 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=32.7
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCC--CeeEEEEcCChHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETE--EYDVVIANILLNPL 301 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~--~fDlVvANIla~vL 301 (327)
|++|+..+..-++... ..+++++. .+|++. + .+ .. +++.||||+..++-
T Consensus 58 iEiD~~l~~~L~~~~~----~~~n~~vi--~~DaLk---------~----------d~--~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 58 IEIDRRLAEVLKERFA----PYDNLTVI--NGDALK---------F----------DF--PSLAQPYKVVANLPYNIS 108 (259)
T ss_pred EEeCHHHHHHHHHhcc----cccceEEE--eCchhc---------C----------cc--hhhcCCCEEEEcCCCccc
Confidence 8999999999888764 12456664 677641 0 11 22 68999999876443
No 227
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=89.09 E-value=0.57 Score=43.61 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhcC-------CCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970 203 TKLCLLLLRSLIKG-------GELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP 256 (327)
Q Consensus 203 T~lcLe~Le~~~~~-------g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~ 256 (327)
-+.--.+|.++... -.+.||.|+ ||-.+.-++.|++....++- ...++...
T Consensus 35 i~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~- 111 (218)
T PF05891_consen 35 IQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCV- 111 (218)
T ss_dssp HHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-
T ss_pred HHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEec-
Confidence 34445566665432 258999999 88899999999987544211 11223210
Q ss_pred CCCCCCCccccccchhhhcccccccCCCC-CCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEEEe
Q 041970 257 DRTFPSSMNERVDGIVEYLSSHKIRGISE-TEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~-~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
| + +.+.+ ..+||+|-+.=. -+-++.++......|+|||.+++-
T Consensus 112 ---------g----L---------Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 112 ---------G----L---------QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp --------------G---------GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------C----H---------hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 1 1 12222 468999998843 356788999999999999998874
No 228
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=88.30 E-value=0.87 Score=43.25 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccc
Q 041970 201 ATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~ 280 (327)
.|+++..+.-++.+. +|+++.+++.|++.-..+-. + .+..+ .. ++..
T Consensus 46 qa~~~iae~~k~VIa----------tD~s~~mL~~a~k~~~~~y~-------~--t~~~m--s~----~~~v-------- 92 (261)
T KOG3010|consen 46 QAARGIAEHYKEVIA----------TDVSEAMLKVAKKHPPVTYC-------H--TPSTM--SS----DEMV-------- 92 (261)
T ss_pred cchHHHHHhhhhhee----------ecCCHHHHHHhhcCCCcccc-------c--CCccc--cc----cccc--------
Confidence 566666666555544 89999999998774321111 0 11111 00 1111
Q ss_pred cCCCCCCCeeEEEEcCCh--HHHHHHHHHHhhccCCCc-EEEE
Q 041970 281 RGISETEEYDVVIANILL--NPLLQLADHIVSYAKPGA-VVGI 320 (327)
Q Consensus 281 ~~~~~~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG-~LIl 320 (327)
..+...+..|+|+|-=.. --+.++.+.+.+.||+.| .+.+
T Consensus 93 ~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 93 DLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 012236789999975433 357889999999999888 4443
No 229
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.29 E-value=0.48 Score=39.62 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=26.8
Q ss_pred CeeEEEEcCCh---------HHHHHHHHHHhhccCCCcEEEE
Q 041970 288 EYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 288 ~fDlVvANIla---------~vL~~L~p~i~~~LkpGG~LIl 320 (327)
+||+|+|=-+. +-|+.++..+...|+|||.||+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 49999997553 3467899999999999999987
No 230
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=87.84 E-value=0.54 Score=39.16 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.9
Q ss_pred ecCCHHHHHHHHHHHHhcCCC
Q 041970 226 VDIDPQVIKSAHQNAALNNIG 246 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~ 246 (327)
+|.+|.+.+.+++|++.|++.
T Consensus 28 ~E~~~~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 28 FEPLPDAYEILEENVKLNNLP 48 (143)
T ss_pred EecCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999875
No 231
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=87.59 E-value=0.91 Score=36.12 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccc
Q 041970 201 ATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI 280 (327)
Q Consensus 201 ~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~ 280 (327)
-+|...++.+++.-. --+=|+|..+. .+.++++++..++. +++++. .++. .+.+.
T Consensus 9 ~st~~l~~~~~~~~~-----~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~--~g~s---------~~~l~------- 63 (106)
T PF13578_consen 9 YSTLWLASALRDNGR-----GKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFI--QGDS---------PDFLP------- 63 (106)
T ss_dssp -----------------------EEEESS-------------GGG--BTEEEE--ES-T---------HHHHH-------
T ss_pred ccccccccccccccc-----CCEEEEECCCc-ccccchhhhhcCCC-CeEEEE--EcCc---------HHHHH-------
Confidence 566666666654311 11122888886 55666777666665 567764 4543 12221
Q ss_pred cCCCCCCCeeEEEEcCC--hHHHHHHHHHHhhccCCCcEEEEe
Q 041970 281 RGISETEEYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 281 ~~~~~~~~fDlVvANIl--a~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.+. .+++|+|+-.-- ......-+..+.++|+|||.+++-
T Consensus 64 -~~~-~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 64 -SLP-DGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -HHH-H--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -HcC-CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 111 368999998764 456666778889999999998874
No 232
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.65 E-value=0.66 Score=48.01 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCCCeeEEEEc---CChHHH-HHHHHHHhhccCCCcEEEEeec
Q 041970 285 ETEEYDVVIAN---ILLNPL-LQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 285 ~~~~fDlVvAN---Ila~vL-~~L~p~i~~~LkpGG~LIlSGI 323 (327)
+...||+|-|- |..... ..++-++-+.|+|||++++||=
T Consensus 178 p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 178 PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 46789999653 222221 2356788999999999999984
No 233
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=86.13 E-value=1.6 Score=43.60 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=58.6
Q ss_pred hhcCCCeeee--eee----------------ecCCHHHHH-------HHHHHHHhcCCCCCcEEEEecCCCCCCCCcccc
Q 041970 213 LIKGGELFLD--YGT----------------VDIDPQVIK-------SAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER 267 (327)
Q Consensus 213 ~~~~g~~VLD--vGc----------------VDIDp~AV~-------~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~ 267 (327)
.+++|+-|+| ||| .|||-..|+ ..+.|.+..|.+..-+.+. .+|.
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl--~~D~-------- 274 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL--TADF-------- 274 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee--eecc--------
Confidence 3678999999 777 899999998 4567888888764434432 1232
Q ss_pred ccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------------------HHHHHHHHHHhhc
Q 041970 268 VDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------------------NPLLQLADHIVSY 311 (327)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------------------~vL~~L~p~i~~~ 311 (327)
+.+. +.....||.|||.+.. ..+-.++.-.+++
T Consensus 275 --------sn~~---~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~ 343 (421)
T KOG2671|consen 275 --------SNPP---LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRR 343 (421)
T ss_pred --------cCcc---hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhh
Confidence 1121 2226789999999863 2233456667788
Q ss_pred cCCCcEEEE
Q 041970 312 AKPGAVVGI 320 (327)
Q Consensus 312 LkpGG~LIl 320 (327)
|..||+|++
T Consensus 344 L~~ggrlv~ 352 (421)
T KOG2671|consen 344 LVDGGRLVF 352 (421)
T ss_pred hhcCceEEE
Confidence 999999875
No 234
>KOG2730 consensus Methylase [General function prediction only]
Probab=84.76 E-value=0.44 Score=44.83 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=28.2
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF 260 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~ 260 (327)
|||||.-+..|++|++..|++ +||++. +||.+
T Consensus 122 IdiDPikIa~AkhNaeiYGI~-~rItFI--~GD~l 153 (263)
T KOG2730|consen 122 IDIDPVKIACARHNAEVYGVP-DRITFI--CGDFL 153 (263)
T ss_pred EeccHHHHHHHhccceeecCC-ceeEEE--echHH
Confidence 899999999999999999998 688875 57753
No 235
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.52 E-value=8.5 Score=36.51 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 286 TEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 286 ~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
.++.|++++..-.-.+..++|.+...++|+|.+++
T Consensus 142 ~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 142 TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 34789999998888889999999999999997764
No 236
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=84.00 E-value=2.4 Score=42.36 Aligned_cols=90 Identities=22% Similarity=0.177 Sum_probs=54.4
Q ss_pred HHHhhhcCCCeeeeeee-----------------ecCCHHHHHHHHHHHH--hcCCCCCcEEEEecCCCCCCCCcccccc
Q 041970 209 LLRSLIKGGELFLDYGT-----------------VDIDPQVIKSAHQNAA--LNNIGPKKMKLHLVPDRTFPSSMNERVD 269 (327)
Q Consensus 209 ~Le~~~~~g~~VLDvGc-----------------VDIDp~AV~~A~eNa~--lNgv~~~~v~v~~~~~d~~~~~~~g~~~ 269 (327)
++..-.+++..++|+|| ++++-.+.+.++.|.. .-++. ++..+ ..++..
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~--~~~~~~--------- 170 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-NKCNF--VVADFG--------- 170 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-hhcce--ehhhhh---------
Confidence 34444567778999999 6666666666665532 22333 22222 123331
Q ss_pred chhhhcccccccCCCCCCCeeEEEEcC---ChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 270 GIVEYLSSHKIRGISETEEYDVVIANI---LLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~fDlVvANI---la~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
....++..||.|-++= .+.-......++.+.++|||+++..
T Consensus 171 -----------~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 171 -----------KMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -----------cCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 0112366788887763 3455566778888999999999864
No 237
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=83.94 E-value=0.58 Score=44.41 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=53.2
Q ss_pred cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
+.-..++|+|| +|.+-.+++.++. ++-|++.. ..+ .+|- +.+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~~--~~~---v~DE----------E~L--- 131 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIET--SYF---VGDE----------EFL--- 131 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceEE--EEE---ecch----------hcc---
Confidence 44568899999 9999999999875 34465541 111 1221 111
Q ss_pred ccccccCCCCCCCeeEEEEcCChHHHH---HHHHHHhhccCCCcEEEEe
Q 041970 276 SSHKIRGISETEEYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla~vL~---~L~p~i~~~LkpGG~LIlS 321 (327)
++ ...++|+|+.-+-++-.- .-+-++...|||.|.||.|
T Consensus 132 ------df-~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 132 ------DF-KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred ------cc-cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 12 256899999887655433 3355788899999998865
No 238
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=83.85 E-value=3.3 Score=42.97 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970 217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276 (327)
Q Consensus 217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~ 276 (327)
+..+||||| +|+....+..|...++..++. ++.+. .++. ..+.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~--~~~~---------~~~~---- 410 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLF--PNNL---------DLIL---- 410 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEE--cCCH---------HHHH----
Confidence 458999999 999999999998888888885 35543 3332 1111
Q ss_pred cccccCCCCCCCeeEEEEcCCh-----------HHHHHHHHHHhhccCCCcEEEEe
Q 041970 277 SHKIRGISETEEYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 277 ~~~~~~~~~~~~fDlVvANIla-----------~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
..+ +..+.|-|.-|..- -+-..++..+++.|+|||.+.+.
T Consensus 411 ----~~~-~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 411 ----NDL-PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred ----Hhc-CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 012 35679999999752 12245778899999999988764
No 239
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=82.63 E-value=4 Score=37.96 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhhccCCCcEE
Q 041970 289 YDVVIANILLNPLLQLADHIVSYAKPGAVV 318 (327)
Q Consensus 289 fDlVvANIla~vL~~L~p~i~~~LkpGG~L 318 (327)
||+|+|=-++. +..++.-...++|+||.+
T Consensus 136 ~D~vtsRAva~-L~~l~e~~~pllk~~g~~ 164 (215)
T COG0357 136 YDVVTSRAVAS-LNVLLELCLPLLKVGGGF 164 (215)
T ss_pred CcEEEeehccc-hHHHHHHHHHhcccCCcc
Confidence 99999987754 344666777889998875
No 240
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=82.07 E-value=5.7 Score=39.89 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHH
Q 041970 229 DPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLAD 306 (327)
Q Consensus 229 Dp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p 306 (327)
+-.+-..+++|+++||++.+.+++.. . .+ .+ .+.+|+|+.=+.. ..+..++.
T Consensus 73 s~~~~~~~~~n~~~n~~~~~~~~~~~----~--------~~------------~~--~~~~d~vl~~~PK~~~~l~~~l~ 126 (378)
T PRK15001 73 SYISELATRENLRLNGIDESSVKFLD----S--------TA------------DY--PQQPGVVLIKVPKTLALLEQQLR 126 (378)
T ss_pred HHHHHHHHHHHHHHcCCCcccceeec----c--------cc------------cc--cCCCCEEEEEeCCCHHHHHHHHH
Confidence 44555666899999999755555431 1 00 11 4569999988764 45667788
Q ss_pred HHhhccCCCcEEEEee
Q 041970 307 HIVSYAKPGAVVGISG 322 (327)
Q Consensus 307 ~i~~~LkpGG~LIlSG 322 (327)
.+..++.||+.+|.-|
T Consensus 127 ~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 127 ALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHhhCCCCCEEEEEE
Confidence 9999999999987554
No 241
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=81.68 E-value=6.4 Score=40.24 Aligned_cols=87 Identities=18% Similarity=0.131 Sum_probs=60.2
Q ss_pred hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970 214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV 272 (327)
Q Consensus 214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~ 272 (327)
.++|.||||+.+ -|....-++.-++|+.+-|+. +.+.+ ..|. . ++.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~---n~D~-------~--ef~ 305 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVS---NYDG-------R--EFP 305 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEE---ccCc-------c--ccc
Confidence 368899999988 788889999999999999987 33322 2332 1 110
Q ss_pred hhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCCCcEEEEee
Q 041970 273 EYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
+... .++||-|+-.-. .+.-.+|+-.....+++||+|+.|-
T Consensus 306 --------~~~~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 306 --------EKEF-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred --------cccc-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 0111 237998886532 1334578888999999999999884
No 242
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=80.13 E-value=6.6 Score=36.89 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=36.5
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA 305 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~ 305 (327)
+|+|+..++.-++.... ..++++. .+|.+. . +.. ... ..+..+||+|+...+-..++
T Consensus 58 vE~d~~~~~~L~~~~~~----~~~~~vi--~~D~l~--~-----~~~--------~~~--~~~~~~vv~NlPy~is~~il 114 (262)
T PF00398_consen 58 VEIDPDLAKHLKERFAS----NPNVEVI--NGDFLK--W-----DLY--------DLL--KNQPLLVVGNLPYNISSPIL 114 (262)
T ss_dssp EESSHHHHHHHHHHCTT----CSSEEEE--ES-TTT--S-----CGG--------GHC--SSSEEEEEEEETGTGHHHHH
T ss_pred ecCcHhHHHHHHHHhhh----cccceee--ecchhc--c-----ccH--------Hhh--cCCceEEEEEecccchHHHH
Confidence 99999999998886652 2457764 567641 0 000 000 24678999999865544444
Q ss_pred HHHhh
Q 041970 306 DHIVS 310 (327)
Q Consensus 306 p~i~~ 310 (327)
-.+..
T Consensus 115 ~~ll~ 119 (262)
T PF00398_consen 115 RKLLE 119 (262)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44433
No 243
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=78.37 E-value=23 Score=26.73 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=27.2
Q ss_pred CCeeEEEEcCChHH--HHHHHHHHhhccCCCcEEEEeecc
Q 041970 287 EEYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 287 ~~fDlVvANIla~v--L~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
..||++........ .......+.+.++|+|.++++...
T Consensus 118 ~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 118 ASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 47999943333222 467888899999999999887653
No 244
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.15 E-value=2.6 Score=38.09 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCC-CcEEEEecCC
Q 041970 200 HATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGP-KKMKLHLVPD 257 (327)
Q Consensus 200 H~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~-~~v~v~~~~~ 257 (327)
-.-+..||+--..+ .|.+||++|- +|=+..+|+..++-.-.|-... .++.+. .-
T Consensus 15 eala~~~l~~~n~~--rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vl--rw 90 (201)
T KOG3201|consen 15 EALAWTILRDPNKI--RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVL--RW 90 (201)
T ss_pred HHHHHHHHhchhHH--hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhh--HH
Confidence 34455555544443 3567777776 8999999999988777773321 122110 00
Q ss_pred CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc---CChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN---ILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN---Ila~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
+. .+ . +...+..+||+|+|- .+.+.-..|+..|..+|+|.|.-+++
T Consensus 91 ~~-----~~---a----------qsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 91 LI-----WG---A----------QSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred HH-----hh---h----------HHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 00 00 0 011124589999975 34466788999999999999986664
No 245
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=77.33 E-value=5.9 Score=39.78 Aligned_cols=108 Identities=18% Similarity=0.317 Sum_probs=67.3
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg 244 (327)
-++.-+|-|.|-- --|-.+++.+.+.. ..+|+|.=+ =||+|.|++..++|+++|.
T Consensus 26 ~pVFYNP~m~~NR---DlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~ 100 (380)
T COG1867 26 APVFYNPAMEFNR---DLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS 100 (380)
T ss_pred CcceeCchhhhcc---chhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC
Confidence 3567778887763 23445555554332 567888655 6999999999999999994
Q ss_pred CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.+ + ..+. ..|+ ..++ ......||+|=-.+...+. .+++...+.++.||+|-+.
T Consensus 101 ~~-~-~~v~--n~DA---------N~lm----------~~~~~~fd~IDiDPFGSPa-PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 101 GE-D-AEVI--NKDA---------NALL----------HELHRAFDVIDIDPFGSPA-PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred cc-c-ceee--cchH---------HHHH----------HhcCCCccEEecCCCCCCc-hHHHHHHHHhhcCCEEEEE
Confidence 43 2 2221 2343 1122 1114689999777664443 3556666777889987553
No 246
>PRK11524 putative methyltransferase; Provisional
Probab=76.13 E-value=3.4 Score=39.39 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=28.9
Q ss_pred CCCeeEEEEcCChH-------------------HHHHHHHHHhhccCCCcEEEEe
Q 041970 286 TEEYDVVIANILLN-------------------PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 286 ~~~fDlVvANIla~-------------------vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.+.||+|++|+... .+...+..+.++|||||.+++.
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56899999997632 2356788999999999999874
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=73.38 E-value=21 Score=33.94 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=29.4
Q ss_pred chhhHHHHHHHHHhhhc--CCCeeeeeee---------------------ecCCHHHHHHHHHHHH
Q 041970 199 EHATTKLCLLLLRSLIK--GGELFLDYGT---------------------VDIDPQVIKSAHQNAA 241 (327)
Q Consensus 199 ~H~TT~lcLe~Le~~~~--~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~ 241 (327)
+.+...-.|.-|.+.+. ..++|||+|| +|.++.+.+.++.=++
T Consensus 14 ~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 14 TYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred HHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 44555555555554431 2358888888 9999999999887543
No 248
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=73.33 E-value=11 Score=37.65 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=18.0
Q ss_pred CCCeeEEEEcCChHHHHHHHHHHhhccCC
Q 041970 286 TEEYDVVIANILLNPLLQLADHIVSYAKP 314 (327)
Q Consensus 286 ~~~fDlVvANIla~vL~~L~p~i~~~Lkp 314 (327)
.+++|+||+.+.-.+.. ++..+.+.+..
T Consensus 268 ~~~vDwvVcDmve~P~r-va~lm~~Wl~~ 295 (357)
T PRK11760 268 RKNVDWLVCDMVEKPAR-VAELMAQWLVN 295 (357)
T ss_pred CCCCCEEEEecccCHHH-HHHHHHHHHhc
Confidence 56899999998765542 33444555543
No 249
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=72.02 E-value=24 Score=33.20 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEEEe
Q 041970 286 TEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 286 ~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LIlS 321 (327)
-+..|+|++++... -..-++......||+||.++++
T Consensus 141 v~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 141 VEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp S--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 35899999998743 3334556677899999999876
No 250
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=70.75 E-value=13 Score=33.06 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=28.3
Q ss_pred CCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEEEe
Q 041970 286 TEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 286 ~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.++||+||+.+.. +.+...+..+..++|+++.+|++
T Consensus 84 ~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 4689999999864 45566777888888998888775
No 251
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=70.67 E-value=8.4 Score=29.92 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=31.6
Q ss_pred cccccCCCCCCCCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEc
Q 041970 60 SLSSIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDE 104 (327)
Q Consensus 60 ~~~~~~~~~~~m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied 104 (327)
|.|.++++ .|..|+..++++..-.+-+.|.++||.|+.+.+
T Consensus 31 TVs~L~~~----~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~p 71 (75)
T PF08029_consen 31 TVSPLADE----DWVAVHAVVPEKQVWDLMDKLKAAGASDILVLP 71 (75)
T ss_dssp EEEE-SST----TEEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE
T ss_pred ceeecCCC----CEEEEEEEecHHHHHHHHHHHHHcCCCEEEEEe
Confidence 55566444 799999999998887777889999999987654
No 252
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=70.53 E-value=23 Score=34.95 Aligned_cols=77 Identities=25% Similarity=0.285 Sum_probs=54.5
Q ss_pred ecCCHHHHHHHHHHHH--hcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC------
Q 041970 226 VDIDPQVIKSAHQNAA--LNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL------ 297 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~--lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl------ 297 (327)
+|||...++..++-.. .+|.+..++.++. ||.+ .+.+ .. ...+||+|+-.+-
T Consensus 151 ~eiD~~Vie~sk~y~p~la~gy~~~~v~l~i--GDG~---------~fl~--------~~-~~~~~dVii~dssdpvgpa 210 (337)
T KOG1562|consen 151 CEIDENVIESSKQYLPTLACGYEGKKVKLLI--GDGF---------LFLE--------DL-KENPFDVIITDSSDPVGPA 210 (337)
T ss_pred ehhhHHHHHHHHHHhHHHhcccCCCceEEEe--ccHH---------HHHH--------Hh-ccCCceEEEEecCCccchH
Confidence 8999999999988543 4566667788764 4532 2221 12 2578999998863
Q ss_pred -hHHHHHHHHHHhhccCCCcEEEEee
Q 041970 298 -LNPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 298 -a~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
+-........+.+.||+||++++-|
T Consensus 211 ~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 211 CALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 2344567788999999999998765
No 253
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=70.28 E-value=7.7 Score=37.74 Aligned_cols=75 Identities=20% Similarity=0.384 Sum_probs=47.0
Q ss_pred CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCC
Q 041970 183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPS 262 (327)
Q Consensus 183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~ 262 (327)
..+++++.|| ||. |-..+|+ .|++|+- +++||.++..-.+-.+--..+ .+++|. .||.+.
T Consensus 59 tD~VLEvGPG----TGn-----LT~~lLe----~~kkVvA---~E~Dprmvael~krv~gtp~~-~kLqV~--~gD~lK- 118 (315)
T KOG0820|consen 59 TDVVLEVGPG----TGN-----LTVKLLE----AGKKVVA---VEIDPRMVAELEKRVQGTPKS-GKLQVL--HGDFLK- 118 (315)
T ss_pred CCEEEEeCCC----CCH-----HHHHHHH----hcCeEEE---EecCcHHHHHHHHHhcCCCcc-ceeeEE--eccccc-
Confidence 3467888886 553 3333333 3556553 799999998887766444443 456654 567541
Q ss_pred CccccccchhhhcccccccCCCCCCCeeEEEEcCCh
Q 041970 263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL 298 (327)
Q Consensus 263 ~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla 298 (327)
. +...||++|+|+..
T Consensus 119 --------------------~-d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 119 --------------------T-DLPRFDGCVSNLPY 133 (315)
T ss_pred --------------------C-CCcccceeeccCCc
Confidence 1 12469999999864
No 254
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=69.18 E-value=17 Score=37.68 Aligned_cols=140 Identities=24% Similarity=0.360 Sum_probs=78.8
Q ss_pred hhHHHHhh----cCceEEEcCcEE-EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCC-eeeeeeeecCC
Q 041970 156 NWIKKAQE----SFHPVEVTKGLW-IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGE-LFLDYGTVDID 229 (327)
Q Consensus 156 DW~~~Wk~----~f~P~~vg~~l~-I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~-~VLDvGcVDID 229 (327)
.|+.+=.+ +|.|..|.+-++ +..+ ....-..||....| .|.++. .++++... ++--.| .+++
T Consensus 156 ~fa~~~~k~~GEfyTP~~v~~liv~~l~~---~~~~~i~DpacGsg-------g~l~~a-~~~~~~~~~~~~~yG-qE~~ 223 (489)
T COG0286 156 KFAEAEGKEAGEFYTPREVSELIVELLDP---EPRNSIYDPACGSG-------GMLLQA-AKYLKRHQDEIFIYG-QEIN 223 (489)
T ss_pred HHHHhcCCCCCccCChHHHHHHHHHHcCC---CCCCeecCCCCchh-------HHHHHH-HHHHHhhccceeEEE-EeCC
Confidence 35555443 688888875333 2222 22336789876444 233333 33333222 233444 6889
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH----------
Q 041970 230 PQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---------- 299 (327)
Q Consensus 230 p~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---------- 299 (327)
+...+.|+-|.-++|++. .+. ...+|.+. ..... .-...++||.|+||++..
T Consensus 224 ~~t~~l~~mN~~lhgi~~-~~~--i~~~dtl~---~~~~~------------~~~~~~~~D~viaNPPf~~~~~~~~~~~ 285 (489)
T COG0286 224 DTTYRLAKMNLILHGIEG-DAN--IRHGDTLS---NPKHD------------DKDDKGKFDFVIANPPFSGKGWGGDLLE 285 (489)
T ss_pred HHHHHHHHHHHHHhCCCc-ccc--cccccccc---CCccc------------ccCCccceeEEEeCCCCCcccccccccc
Confidence 999999999999999973 122 22344320 00000 000246899999998642
Q ss_pred ------------------HHHHHHHHHhhccCCCc---EEEEeeccC
Q 041970 300 ------------------PLLQLADHIVSYAKPGA---VVGISGILS 325 (327)
Q Consensus 300 ------------------vL~~L~p~i~~~LkpGG---~LIlSGIl~ 325 (327)
-....+..+...|+||| .++..|++-
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlf 332 (489)
T COG0286 286 SEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLF 332 (489)
T ss_pred ccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCc
Confidence 01345667888999866 455666653
No 255
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=68.10 E-value=11 Score=30.72 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=33.3
Q ss_pred cccccCCCCCCCCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEc
Q 041970 60 SLSSIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDE 104 (327)
Q Consensus 60 ~~~~~~~~~~~m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied 104 (327)
|.|.+|++ .|..|+..|+++.+-.+-+.|.++||.|+.+.+
T Consensus 55 TVs~l~~~----~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~~ 95 (100)
T TIGR03455 55 TVSPLADE----GWVAVHAVVDEKVVNELIDKLKAAGARDILVLP 95 (100)
T ss_pred CcCcCCCC----CeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEec
Confidence 44556643 599999999998888888999999999997653
No 256
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=67.06 E-value=5.6 Score=36.78 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCCCeeEEEEcCChH----------HHHHHH----HHHhhccCCCcEEEEe
Q 041970 285 ETEEYDVVIANILLN----------PLLQLA----DHIVSYAKPGAVVGIS 321 (327)
Q Consensus 285 ~~~~fDlVvANIla~----------vL~~L~----p~i~~~LkpGG~LIlS 321 (327)
++.+.|+|++....+ -+++|. --....++|+|.+++-
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 467899999987531 123332 2234667899999874
No 257
>PHA01634 hypothetical protein
Probab=65.72 E-value=6.7 Score=34.15 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=28.1
Q ss_pred CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCC
Q 041970 216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIG 246 (327)
Q Consensus 216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~ 246 (327)
.+++|+|+|. ++.+|.-.+..++|++.|.+-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~ 77 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC 77 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee
Confidence 5789999998 899999999999999999875
No 258
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=63.12 E-value=10 Score=36.71 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=34.8
Q ss_pred cccccCCC-CCCCeeEEEEcC--ChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 277 SHKIRGIS-ETEEYDVVIANI--LLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 277 ~~~~~~~~-~~~~fDlVvANI--la~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+|+.+.++ +++..|++|.-+ ...-+..++.++.+.|++||.|++.-|-
T Consensus 216 ~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 216 ACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred eccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 45555443 467899998764 2344667888999999999999987663
No 259
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=62.84 E-value=55 Score=31.08 Aligned_cols=82 Identities=17% Similarity=0.329 Sum_probs=53.2
Q ss_pred cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970 215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL 275 (327)
Q Consensus 215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~ 275 (327)
..|.+||.||- ++-.|...+.-|++.-... ++|.+. .|.. ++.+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek---~nViil--~g~W---------eDvl~-- 163 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK---ENVIIL--EGRW---------EDVLN-- 163 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc---cceEEE--ecch---------Hhhhc--
Confidence 57889999998 7888888888777653321 233322 2322 11111
Q ss_pred ccccccCCCCCCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEE
Q 041970 276 SSHKIRGISETEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 276 ~~~~~~~~~~~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LI 319 (327)
.+ +++.||-|.-.-.+ +-+..+-..+.++|||+|.+-
T Consensus 164 ------~L-~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 164 ------TL-PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred ------cc-cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 12 25669999887654 455667788999999999863
No 260
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=61.80 E-value=11 Score=33.08 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=26.2
Q ss_pred CCchhhH---HHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHH
Q 041970 197 TGEHATT---KLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQ 238 (327)
Q Consensus 197 TG~H~TT---~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~e 238 (327)
.+.|||. .|+-++|+..-.+|+.|||--| +|+++..++.|++
T Consensus 169 ~~~h~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 169 KGKHPTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp ----TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ccceeecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3468775 4555555555578999999766 9999999999875
No 261
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=61.72 E-value=36 Score=35.45 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=42.8
Q ss_pred ecCCHHHHHHHHH-HHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------
Q 041970 226 VDIDPQVIKSAHQ-NAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------ 298 (327)
Q Consensus 226 VDIDp~AV~~A~e-Na~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------ 298 (327)
+|+++.+|+.... |++.+. -+.+. ..|.. .+ .+ +++.||+|+.=-..
T Consensus 77 iD~S~V~V~~m~~~~~~~~~----~~~~~--~~d~~---------~l----------~f-edESFdiVIdkGtlDal~~d 130 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERP----EMQMV--EMDMD---------QL----------VF-EDESFDIVIDKGTLDALFED 130 (482)
T ss_pred ccccHHHHHHHHhccccCCc----ceEEE--Eecch---------hc----------cC-CCcceeEEEecCccccccCC
Confidence 9999999999864 543332 12221 22321 00 12 36778888875432
Q ss_pred -------HHHHHHHHHHhhccCCCcEEEEe
Q 041970 299 -------NPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 299 -------~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
......+.++.+.+++||+++.-
T Consensus 131 e~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 131 EDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred chhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 23345778899999999987653
No 262
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=60.15 E-value=11 Score=36.25 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=30.6
Q ss_pred CCCeeEEEEcCC---hHHHHHHHHHHhhccCCCcEEEEee
Q 041970 286 TEEYDVVIANIL---LNPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 286 ~~~fDlVvANIl---a~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
.++||+|+..-. |.-+.+.++.|.++|||||+.|=-|
T Consensus 163 ~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 163 KGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred CCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecC
Confidence 368999998864 5667788899999999999988655
No 263
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=59.25 E-value=11 Score=39.22 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=49.9
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA 305 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~ 305 (327)
-|.++.||+.-++|+++|+++ +.++.. .+|+- -+. ...... ...||+|=-.+...+ ..++
T Consensus 140 nD~~~~aV~~i~~Nv~~N~v~-~ive~~--~~DA~---------~lM-----~~~~~~--~~~FDvIDLDPyGs~-s~FL 199 (525)
T KOG1253|consen 140 NDLNENAVTSIQRNVELNGVE-DIVEPH--HSDAN---------VLM-----YEHPMV--AKFFDVIDLDPYGSP-SPFL 199 (525)
T ss_pred cCCCHHHHHHHHhhhhhcCch-hhcccc--cchHH---------HHH-----Hhcccc--ccccceEecCCCCCc-cHHH
Confidence 799999999999999999987 556543 34431 111 001111 467999976665322 2356
Q ss_pred HHHhhccCCCcEEEE
Q 041970 306 DHIVSYAKPGAVVGI 320 (327)
Q Consensus 306 p~i~~~LkpGG~LIl 320 (327)
+...+.++.||.|.+
T Consensus 200 DsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 200 DSAVQAVRDGGLLCV 214 (525)
T ss_pred HHHHHHhhcCCEEEE
Confidence 777788899998865
No 264
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=54.11 E-value=39 Score=30.80 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.4
Q ss_pred CCCeeEEEE-----cCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 286 TEEYDVVIA-----NILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 286 ~~~fDlVvA-----NIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
...||.|++ |+..+.-.+++..+..+|.+||.++.
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 457999986 45567777899999999999998874
No 265
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=53.10 E-value=14 Score=34.43 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=31.8
Q ss_pred cccccCCC-CCCCeeEEEEcC--ChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 277 SHKIRGIS-ETEEYDVVIANI--LLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 277 ~~~~~~~~-~~~~fDlVvANI--la~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
+|+...++ +++..|++|.-+ ..--+...+.+..+.|||||.|.+.-+-
T Consensus 110 acdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 110 ACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence 45544443 367899999875 2344567788999999999999987653
No 266
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=52.60 E-value=13 Score=36.89 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=26.8
Q ss_pred CeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970 288 EYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 325 (327)
Q Consensus 288 ~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~ 325 (327)
.||+|+--.. ...+....+.|++||++++-|+..
T Consensus 229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCCC
Confidence 4999987665 335567778899999999999873
No 267
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=52.57 E-value=16 Score=35.93 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=35.2
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLH 253 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~ 253 (327)
-|+||- -||-|-| ++..|+.+- . ..+++ ++|-||.|++.|++....++ +|+.+.
T Consensus 25 giyiD~--TlG~GGH--S~~iL~~l~---~-~~~li---~~DrD~~Ai~~a~~~l~~~~---~r~~~v 78 (314)
T COG0275 25 GIYIDG--TLGAGGH--SRAILEKLP---D-LGRLI---GIDRDPQAIAIAKERLKEFD---GRVTLV 78 (314)
T ss_pred cEEEEe--cCCCcHh--HHHHHHhCC---C-CCeEE---EEcCCHHHHHHHHHHhhccC---CcEEEE
Confidence 366664 4899999 555555442 1 11111 18999999999999887765 456553
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=52.07 E-value=27 Score=33.24 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=32.7
Q ss_pred CchhhHHHHHHHHHhhh----cCCCeeeeeee------------------ecCCHHHHHHHHHHHH
Q 041970 198 GEHATTKLCLLLLRSLI----KGGELFLDYGT------------------VDIDPQVIKSAHQNAA 241 (327)
Q Consensus 198 G~H~TT~lcLe~Le~~~----~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~ 241 (327)
+.||| +.=++++++++ .+|+.|||--+ +|+|+..++.|++-++
T Consensus 187 ~~HPt-~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 187 ENHPT-QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ccCcc-cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 35996 45555555544 68999999755 9999999999988764
No 269
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=50.47 E-value=28 Score=29.37 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=17.0
Q ss_pred ecCCHHHHHHHHHHHHhcC
Q 041970 226 VDIDPQVIKSAHQNAALNN 244 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNg 244 (327)
||.++..++.|++.++..+
T Consensus 59 iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 59 IDCNESLVESAQKRAQKLG 77 (141)
T ss_pred EECCcHHHHHHHHHHHHhc
Confidence 9999999999999887766
No 270
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=49.58 E-value=21 Score=32.15 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=22.5
Q ss_pred CCeeEEE-EcCChHHH------HHHHHHHhhccCCCcEEEEee
Q 041970 287 EEYDVVI-ANILLNPL------LQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 287 ~~fDlVv-ANIla~vL------~~L~p~i~~~LkpGG~LIlSG 322 (327)
.+||+|| .|+-++.+ ..-+..++++++.||-|++.|
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmig 108 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIG 108 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEe
Confidence 5799765 78888877 345667778888888777765
No 271
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=48.62 E-value=22 Score=30.95 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=21.1
Q ss_pred CCeeEEEEcCC-----------hHHH---HHHHHHHhhccCCCcEEEEe
Q 041970 287 EEYDVVIANIL-----------LNPL---LQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 287 ~~fDlVvANIl-----------a~vL---~~L~p~i~~~LkpGG~LIlS 321 (327)
+++|+|++.+- ...+ ...+......|+|||.+++-
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 68999999982 1122 22223455779999988863
No 272
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=47.88 E-value=25 Score=33.22 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhc-----CCCeeeeeee----------------------ecCCHHHHHHHHHHHHh
Q 041970 203 TKLCLLLLRSLIK-----GGELFLDYGT----------------------VDIDPQVIKSAHQNAAL 242 (327)
Q Consensus 203 T~lcLe~Le~~~~-----~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~l 242 (327)
.|+..|.+++-+. .+-++.|=.| -|||+.|++.|++|..+
T Consensus 33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 5888888887632 2248999999 89999999999999854
No 273
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=46.54 E-value=1.5e+02 Score=29.70 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=53.3
Q ss_pred Ceeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccccc
Q 041970 218 ELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHK 279 (327)
Q Consensus 218 ~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~ 279 (327)
...+|+|- ++.|..-|..++.+.+ -|++. +.||.+ .
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~gV~~-------v~gdmf--------q---------- 232 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PGVEH-------VAGDMF--------Q---------- 232 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CCcce-------eccccc--------c----------
Confidence 68899998 8999999999888876 55541 235543 1
Q ss_pred ccCCCCCCCeeEEEEc-CC----hHHHHHHHHHHhhccCCCcEEEEeec
Q 041970 280 IRGISETEEYDVVIAN-IL----LNPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 280 ~~~~~~~~~fDlVvAN-Il----a~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
. ..+.|+|+.= ++ -+-+..++..+++.|+|||.+|+---
T Consensus 233 --~---~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 233 --D---TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred --c---CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 1 1245677654 33 35678899999999999999987543
No 274
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=44.13 E-value=74 Score=31.15 Aligned_cols=52 Identities=27% Similarity=0.341 Sum_probs=34.0
Q ss_pred EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970 187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLH 253 (327)
Q Consensus 187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~ 253 (327)
+++| .-||-|.| |+..|+.+ .+ .+|+- +|.||.|++.|+++.+.. . +++.+.
T Consensus 23 iyVD--~TlG~GGH--S~~iL~~l----~~-g~vig---iD~D~~Al~~ak~~L~~~--~-~R~~~i 74 (305)
T TIGR00006 23 IYID--CTLGFGGH--SKAILEQL----GT-GRLIG---IDRDPQAIAFAKERLSDF--E-GRVVLI 74 (305)
T ss_pred EEEE--eCCCChHH--HHHHHHhC----CC-CEEEE---EcCCHHHHHHHHHHHhhc--C-CcEEEE
Confidence 5555 34899999 44444433 22 24432 899999999999987654 2 466664
No 275
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=40.83 E-value=31 Score=33.36 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=35.4
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT 225 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc 225 (327)
.|-+.|--.+.-|.|-++...++..++++..|..|+|||.
T Consensus 20 IlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGg 59 (282)
T PRK11613 20 ILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGG 59 (282)
T ss_pred EEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 3568888888888898999999999999999999999997
No 276
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=40.40 E-value=38 Score=33.67 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=30.9
Q ss_pred CCCeeEEEEcCC---hHHHHHHHHHHhhccCCCcEEEEeec
Q 041970 286 TEEYDVVIANIL---LNPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 286 ~~~fDlVvANIl---a~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
.+.||+||-+.. |+-+.+.+..|.+.|||||+.|=-|=
T Consensus 257 ~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 257 AGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred CCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccc
Confidence 346999999864 56677888999999999999886653
No 277
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=39.21 E-value=35 Score=32.25 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=35.4
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT 225 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc 225 (327)
.|-+.|.-.|..|.+-+..-+++...++++.|..++|||+
T Consensus 5 ilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~ 44 (257)
T TIGR01496 5 IVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGG 44 (257)
T ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 3568898888888888888999999999999999999996
No 278
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=39.17 E-value=11 Score=37.07 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=32.2
Q ss_pred EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970 187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLH 253 (327)
Q Consensus 187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~ 253 (327)
++|| .-||.|-| |+..|+.+. + .+|+ ++|.||.|++.|+++++.. . +++.+.
T Consensus 23 ~~vD--~T~G~GGH--S~aiL~~~~----~-~~li---~~DrD~~a~~~a~~~l~~~--~-~r~~~~ 74 (310)
T PF01795_consen 23 IYVD--CTFGGGGH--SKAILEKLP----N-GRLI---GIDRDPEALERAKERLKKF--D-DRFIFI 74 (310)
T ss_dssp EEEE--TT-TTSHH--HHHHHHT-T----T--EEE---EEES-HHHHHHHHCCTCCC--C-TTEEEE
T ss_pred eEEe--ecCCcHHH--HHHHHHhCC----C-CeEE---EecCCHHHHHHHHHHHhhc--c-ceEEEE
Confidence 5566 45999999 555555443 2 2333 2799999999998877644 2 567664
No 279
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=37.58 E-value=26 Score=36.58 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=29.3
Q ss_pred CCCeeEEEEcCChHH------HHHHHHHHhhccCCCcEEEEe
Q 041970 286 TEEYDVVIANILLNP------LLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 286 ~~~fDlVvANIla~v------L~~L~p~i~~~LkpGG~LIlS 321 (327)
..+||+|-||-+... +..++=++-+.|+|||.+|+.
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 568999999976543 456777899999999999975
No 280
>PLN02245 ATP phosphoribosyl transferase
Probab=36.40 E-value=63 Score=32.93 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=35.9
Q ss_pred cccccCCCCC---CCCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEc
Q 041970 60 SLSSIYPPSV---ESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDE 104 (327)
Q Consensus 60 ~~~~~~~~~~---~m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied 104 (327)
|.|.+|.+.. +-.|..|++.|++..+-.+-+.|.++||.||.+.+
T Consensus 335 TVspl~~~~~~~~~~~w~AV~~vV~~~~v~~~~~~Lk~~GA~~IlV~p 382 (403)
T PLN02245 335 TISPVYCKRDGKVAVDYYAIVICVPKKALYESVQQLRKIGGSGVLVSP 382 (403)
T ss_pred ccccccccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEEc
Confidence 5566774432 45799999999998888888999999999998754
No 281
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=35.99 E-value=1.1e+02 Score=29.26 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=25.5
Q ss_pred CeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 288 EYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 288 ~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.+|+|+=..-.......+....+.+++||++++-|+.
T Consensus 222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeec
Confidence 4898885543211223456677899999999998864
No 282
>PRK10742 putative methyltransferase; Provisional
Probab=35.76 E-value=1e+02 Score=29.49 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=31.6
Q ss_pred cCCCchhhHHHHHHHHHhhhcCCC--eeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970 195 FGTGEHATTKLCLLLLRSLIKGGE--LFLDYGT------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 195 FGTG~H~TT~lcLe~Le~~~~~g~--~VLDvGc------------------VDIDp~AV~~A~eNa~lN 243 (327)
||.|.++ ..++++. +++|. +|||.=+ +|-+|.+....++|++.-
T Consensus 70 ~~~g~~~---~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 70 FGGGRGE---AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred hcCCCcc---HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh
Confidence 6666552 3344433 35676 8999744 999999999999999873
No 283
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=35.09 E-value=1e+02 Score=28.50 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=20.0
Q ss_pred CCeeEEEEcCC---hHHHHHHHHHHhhccCCCcEEEEe
Q 041970 287 EEYDVVIANIL---LNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 287 ~~fDlVvANIl---a~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
....+|+=.-- .+++..|.- ...++++|+++|+-
T Consensus 110 ~~~vlVilDs~H~~~hvl~eL~~-y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEHVLAELEA-YAPLVSPGSYLIVE 146 (206)
T ss_dssp -SSEEEEESS----SSHHHHHHH-HHHT--TT-EEEET
T ss_pred CCceEEEECCCccHHHHHHHHHH-hCccCCCCCEEEEE
Confidence 44567775443 556665554 89999999999863
No 284
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=33.85 E-value=46 Score=31.51 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=33.8
Q ss_pred EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee
Q 041970 187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT 225 (327)
Q Consensus 187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc 225 (327)
|-+.|--.+.-|.+-+...+++...+++..|..++|||.
T Consensus 7 lN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~ 45 (257)
T cd00739 7 LNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGG 45 (257)
T ss_pred EcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 557888877778788889999999999999999999995
No 285
>PF11582 DUF3240: Protein of unknown function (DUF3240); InterPro: IPR021634 This family of proteins with unknown function appears to be restricted to Proteobacteria. ; PDB: 3CE8_A.
Probab=33.78 E-value=55 Score=26.66 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=36.0
Q ss_pred EEEEEeCCchHHHHHHHHHhc-C-CceEEEEcCC---C-----CCCCC----CCcEEEEEEcCCCCCHHHHHHhhhhhc
Q 041970 75 LVRICCQKHALDMFSEAPLCF-G-ASSTSVDEHD---N-----DADEN----SDEIYIDSIFPECKDVDECILNTANSI 139 (327)
Q Consensus 75 ei~i~~~~e~~d~v~~~L~e~-G-a~gv~ied~~---~-----~~~~~----~~~~~v~ayfp~~~~~~~~l~~~~~~~ 139 (327)
-+++.|+.+..|.+.+.|.+. | ..|++..+.. . ...|. .+.+.+..+.++ ++++++++.+++.+
T Consensus 6 ~LtLi~~~~led~lvD~Ll~~~~~v~GFt~~~~~g~g~~~~~~s~~EQV~G~~~~~~~~~~~~~-~~~~~Ll~~L~~~~ 83 (102)
T PF11582_consen 6 LLTLIVPPELEDALVDYLLELPDGVSGFTSSPAEGHGSRHSLLSAAEQVSGRARRVRFQVILPE-EDAEELLAALKQEF 83 (102)
T ss_dssp EEEEEEEGGGHHHHHHHHTT--TT----EEEEEEEEE-------------EEEEEEEEEEEEEG-GGHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHHhcCccCCceEeeccccCCcccCCCHHHhcccccceEEEEEEECH-HHHHHHHHHHHHHc
Confidence 378999999999999999999 4 5688765432 0 00011 123455555443 35667777776553
No 286
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.02 E-value=65 Score=30.87 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCCeeEEEEcCCh--------------HHHHHHHHHHhhccCCCcEEE
Q 041970 286 TEEYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 286 ~~~fDlVvANIla--------------~vL~~L~p~i~~~LkpGG~LI 319 (327)
.++.|+||+.-.. +.|...+.-....|||||.|+
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 5789999998643 334445556678999999986
No 287
>PLN03014 carbonic anhydrase
Probab=32.00 E-value=44 Score=33.35 Aligned_cols=27 Identities=37% Similarity=0.246 Sum_probs=16.2
Q ss_pred ccCccc-cCCCceEEEEEecCCCCCCCC
Q 041970 30 QKPRTQ-LTTPSSVLIKVSAPSSSSSSS 56 (327)
Q Consensus 30 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 56 (327)
+.++.. .+.||++.-.+.++||||+||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (347)
T PLN03014 18 QSSLQKLSLRTSSTVACLPPASSSSSSS 45 (347)
T ss_pred cccccccccCCcceEEEecccccccccc
Confidence 334444 557888888887665544333
No 288
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=30.71 E-value=1.6e+02 Score=21.94 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=32.1
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPEC 125 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~ 125 (327)
+|.+++|.||.+....+...|....+ ..+ +.+. ..+.+.|+++.|..
T Consensus 2 Pi~~~~I~~p~~~~g~v~~~l~~rrg--~i~-~~~~----~~~~~~i~~~iP~~ 48 (78)
T cd03713 2 PIMKVEVTVPEEYMGDVIGDLSSRRG--QIL-GTES----RGGWKVIKAEVPLA 48 (78)
T ss_pred CEEEEEEEcCHHHHHHHHHHHHHcCC--ceE-ceec----cCCcEEEEEEcCHH
Confidence 47899999999999888888876543 222 1111 11357899999854
No 289
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=30.68 E-value=37 Score=35.05 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=43.8
Q ss_pred cCCCchhhHHHHHHH--HHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970 195 FGTGEHATTKLCLLL--LRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH 253 (327)
Q Consensus 195 FGTG~H~TT~lcLe~--Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~ 253 (327)
||-+.-- +||-.+. +..+.++|..|-|+-| -|..|.+++.-++|+++|.+...+++++
T Consensus 227 fskVYWn-sRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~ 304 (495)
T KOG2078|consen 227 FSKVYWN-SRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIF 304 (495)
T ss_pred cceEEee-ccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeee
Confidence 5555432 4554443 3345688999999988 8999999999999999999986557765
No 290
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=30.28 E-value=1.9e+02 Score=21.64 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=32.7
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPEC 125 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~ 125 (327)
+|.+++|.||.+....+...|....+. .++ .... ..+.+.|+++.|..
T Consensus 2 Pi~~~~I~~p~~~~g~v~~~l~~rrg~--v~~-~~~~---~~~~~~i~~~iP~~ 49 (79)
T cd01514 2 PIMKVEITVPEEYLGAVIGDLSKRRGE--ILG-MEPR---GTGRVVIKAELPLA 49 (79)
T ss_pred CEEEEEEEcCHHHHHHHHHHHHhcCCe--eEe-eEec---CCCeEEEEEECCHH
Confidence 478999999999999888888775542 222 1110 12468899999854
No 291
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=30.16 E-value=58 Score=26.08 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 286 TEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 286 ~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
...||++|.+...+.--..+..+...++-||.+++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllil 43 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLIL 43 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEE
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEE
Confidence 56799999999887777788889999999999886
No 292
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=29.88 E-value=46 Score=31.11 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=24.8
Q ss_pred eEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970 290 DVVIANILLNPLLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 290 DlVvANIla~vL~~L~p~i~~~LkpGG~LIl 320 (327)
|+-..||........-.++.+.|||||.+.+
T Consensus 134 dmh~k~i~~~~A~~vna~vf~~LKPGGv~~V 164 (238)
T COG4798 134 DMHNKNIHPATAAKVNAAVFKALKPGGVYLV 164 (238)
T ss_pred hhhccccCcchHHHHHHHHHHhcCCCcEEEE
Confidence 3444677778888888899999999998865
No 293
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=29.23 E-value=45 Score=28.25 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 287 EEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 287 ~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.+||+||+--+...-......+.++++.||.+|+.
T Consensus 52 ~~y~~vi~P~~~~~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 52 SGYKLVVLPDLYLLSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred ccCCEEEECchhcCCHHHHHHHHHHHHCCCEEEEe
Confidence 36999998554444456788899999999999874
No 294
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=29.01 E-value=25 Score=27.16 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=14.1
Q ss_pred cchhhhhhhhhhhhcccCccccCCCceEEEEEecC-CCCCCCCCcccccccCCCCCC--CCc
Q 041970 15 YKQLTRHQNLFTLIKQKPRTQLTTPSSVLIKVSAP-SSSSSSSPCASLSSIYPPSVE--SPY 73 (327)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--m~w 73 (327)
+..-+|.++-..+-+........++-.++ .+.++ ......|.|+-|+..|+|+++ -.|
T Consensus 13 l~a~sR~~LM~KLA~~~~~~~~~~~~~~~-~~~~~~~~~~~aS~C~lLkNMFDP~~Ete~~W 73 (73)
T PF15519_consen 13 LNATSRAALMAKLARGDGPQIPPAAQQAL-QPNGSIPIPPIASRCFLLKNMFDPAEETEPDW 73 (73)
T ss_dssp ---------------------------------------S---SEEEEESSS-TTCGGSTTH
T ss_pred ccccccccccccccccccccccccccccc-CcCCCCCCCCCCCceeeeecCCCcccccCCCC
Confidence 44567777776666644422111111111 11111 111377899999999999987 345
No 295
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=28.76 E-value=2.1e+02 Score=21.65 Aligned_cols=48 Identities=10% Similarity=0.015 Sum_probs=32.7
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPEC 125 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~ 125 (327)
+|.+++|.||.+..-.|...|....+. +.+.+.. ..+.+.|++..|..
T Consensus 2 Pi~~v~I~~P~~~~g~V~~~l~~rrg~---i~~~~~~---~~~~~~i~~~~P~~ 49 (79)
T cd03710 2 PIEELTIDVPEEYSGAVIEKLGKRKGE---MVDMEPD---GNGRTRLEFKIPSR 49 (79)
T ss_pred CEEEEEEEeCchhhHHHHHHHHhCCCE---EEccEEC---CCCEEEEEEEECHH
Confidence 478999999999988888877776542 2222110 11457899999854
No 296
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=28.69 E-value=1.7e+02 Score=21.91 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=31.9
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPEC 125 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~ 125 (327)
+|.+++|.||.+..-.+...|....+.=+..+. ..+.+.|+++.|..
T Consensus 2 Pi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~-------~~~~~~i~~~~P~~ 48 (78)
T cd04097 2 PIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDT-------GEDEFTLEAEVPLN 48 (78)
T ss_pred CEEEEEEEecHHHHHHHHHHHHHCCCEEeceEe-------cCCeEEEEEEECHH
Confidence 478999999998888887777765542222111 11357899999854
No 297
>PRK13753 dihydropteroate synthase; Provisional
Probab=28.58 E-value=70 Score=30.94 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=34.8
Q ss_pred EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee
Q 041970 187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT 225 (327)
Q Consensus 187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc 225 (327)
|-+.|.-.+.-|.+-+....++..++++..|..|+|||.
T Consensus 8 lNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGg 46 (279)
T PRK13753 8 LNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGP 46 (279)
T ss_pred EeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 557888888888888889999999999999999999999
No 298
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.45 E-value=3.8e+02 Score=24.17 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=49.6
Q ss_pred Ceeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccc
Q 041970 218 ELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSH 278 (327)
Q Consensus 218 ~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~ 278 (327)
.+.+|+|+ ++.+|.-|..+|-.+-+.|+. .+.++. .-|++
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-k~trf~--Rkdlw------------------ 132 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-KSTRFR--RKDLW------------------ 132 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-cchhhh--hhhhh------------------
Confidence 47899998 999999999999999999987 344443 23432
Q ss_pred cccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEE
Q 041970 279 KIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVG 319 (327)
Q Consensus 279 ~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LI 319 (327)
... -..|.-|+--..-..+..|.+.+..-+..|-.++
T Consensus 133 ---K~d-l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 133 ---KVD-LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred ---hcc-ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEE
Confidence 010 1234444433344555566677776666666554
No 299
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=26.27 E-value=1.2e+02 Score=28.87 Aligned_cols=70 Identities=7% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcC---ChHHHHHHHHH
Q 041970 231 QVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI---LLNPLLQLADH 307 (327)
Q Consensus 231 ~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI---la~vL~~L~p~ 307 (327)
...+..++|++..|+..+++.+. +|.. .+- ++....-.+-+++| +.++....+..
T Consensus 140 ~s~e~V~~n~~~~gl~~~~v~~v--kG~F---------~dT-----------Lp~~p~~~IAll~lD~DlYesT~~aLe~ 197 (248)
T PF05711_consen 140 VSLEEVRENFARYGLLDDNVRFV--KGWF---------PDT-----------LPDAPIERIALLHLDCDLYESTKDALEF 197 (248)
T ss_dssp HHHHHHHHCCCCTTTSSTTEEEE--ES-H---------HHH-----------CCC-TT--EEEEEE---SHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCcccEEEE--CCcc---------hhh-----------hccCCCccEEEEEEeccchHHHHHHHHH
Confidence 35667777877777655677764 4553 111 11111234666676 34556667788
Q ss_pred HhhccCCCcEEEEee
Q 041970 308 IVSYAKPGAVVGISG 322 (327)
Q Consensus 308 i~~~LkpGG~LIlSG 322 (327)
+...|.|||++|+-.
T Consensus 198 lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 198 LYPRLSPGGIIIFDD 212 (248)
T ss_dssp HGGGEEEEEEEEESS
T ss_pred HHhhcCCCeEEEEeC
Confidence 999999999998753
No 300
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=26.14 E-value=1.7e+02 Score=21.94 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=32.8
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECK 126 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~~ 126 (327)
++.+++|.||.+..-.+...|....+. +.+.+. ..+.+.|+++.|..+
T Consensus 2 Pi~~~~i~~p~~~~g~v~~~l~~rrg~---i~~~~~----~~~~~~i~~~~P~~~ 49 (78)
T cd03711 2 PYLRFELEVPQDALGRAMSDLAKMGAT---FEDPQI----KGDEVTLEGTIPVAT 49 (78)
T ss_pred CeEEEEEEcCHHHHHHHHHHHHHcCCE---eeCcEe----cCCEEEEEEEECHHH
Confidence 478999999998888888877765542 222211 124688999998543
No 301
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=25.63 E-value=3.1e+02 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 287 EEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 287 ~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
..+|+|+-..-... .+....+.+++||++++-|..
T Consensus 199 ~g~Dvvid~~G~~~---~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 199 RDYRAIYDASGDPS---LIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred CCCCEEEECCCCHH---HHHHHHHhhhcCcEEEEEeec
Confidence 35899987655332 345667789999999998864
No 302
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=25.56 E-value=1.2e+02 Score=28.84 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=30.0
Q ss_pred CCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEc
Q 041970 71 SPYLLVRICCQKHALDMFSEAPLCFGASSTSVDE 104 (327)
Q Consensus 71 m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied 104 (327)
..|..|+..|++..+-.+-+.|.++||.|+.+.+
T Consensus 248 ~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~~ 281 (287)
T PRK00489 248 EGWVAVHAVVPEDLVWELMDKLKALGARGILVLP 281 (287)
T ss_pred CCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEec
Confidence 3699999999999888888999999999997654
No 303
>PRK13699 putative methylase; Provisional
Probab=25.09 E-value=1.4e+02 Score=27.63 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=34.4
Q ss_pred chhhH---HHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970 199 EHATT---KLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALN 243 (327)
Q Consensus 199 ~H~TT---~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN 243 (327)
.|||. .|+-++|+.+-.+|+.|||--| +|+++..++.|++.++.-
T Consensus 143 ~hp~~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 143 HHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 48874 4555566666678999999766 999999999998876553
No 304
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=24.05 E-value=1.4e+02 Score=26.17 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCeeEEEEcCCh--HHHHHHHHHHhhccCCCcEEEEee
Q 041970 286 TEEYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 286 ~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
..+||.||--... ....-++..+..+|++||.+++.|
T Consensus 67 ~~~~D~vvly~PKaK~e~~~lL~~l~~~L~~g~~i~vVG 105 (155)
T PF08468_consen 67 DQDFDTVVLYWPKAKAEAQYLLANLLSHLPPGTEIFVVG 105 (155)
T ss_dssp HTT-SEEEEE--SSHHHHHHHHHHHHTTS-TT-EEEEEE
T ss_pred ccCCCEEEEEccCcHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3579999987763 445557788999999999999987
No 305
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.42 E-value=2.1e+02 Score=29.25 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=22.7
Q ss_pred CeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970 288 EYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 288 ~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl 324 (327)
.+|+|+.-.-... .+-....+.+|+||+++..|.-
T Consensus 257 ~aDVVI~atG~~~--~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 257 EGDIFVTTTGNKD--IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCCEEEECCCCHH--HHHHHHHhcCCCCcEEEEeCCC
Confidence 4799885432111 1223457789999999998853
No 306
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.86 E-value=73 Score=29.87 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=31.6
Q ss_pred EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee
Q 041970 187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT 225 (327)
Q Consensus 187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc 225 (327)
|-+.|.-.|--|.+-+..-+++..++++..|..++|||+
T Consensus 7 lN~t~dsf~~~~~~~~~~~~~~~a~~~~~~GAdiIDvG~ 45 (258)
T cd00423 7 LNVTPDSFSDGGKFLSLDKALEHARRMVEEGADIIDIGG 45 (258)
T ss_pred ecCCCCchhhccccCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 345565666666777888999999999999999999999
No 307
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=22.76 E-value=2.5e+02 Score=21.10 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=31.2
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPEC 125 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~ 125 (327)
++.+++|.+|.+..-.|...|.... |..++....+ ..+.+.|+++.|..
T Consensus 2 Pi~~~~I~~p~~~~g~V~~~l~~rr--g~i~~~~~~~---~~~~~~i~~~iP~~ 50 (80)
T cd04096 2 PIYLVEIQCPEDALGKVYSVLSKRR--GHVLSEEPKE---GTPLFEIKAYLPVI 50 (80)
T ss_pred CEEEEEEEEcHHHhhHHHHhhhhCe--eEEeEEeecC---CCccEEEEEEEeHH
Confidence 4789999999988887777666543 3333221110 12348899999854
No 308
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=22.73 E-value=1.9e+02 Score=29.48 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=22.2
Q ss_pred CeeEEEEcCChHHHHHHH-HHHhhccCCCcEEEEeecc
Q 041970 288 EYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGISGIL 324 (327)
Q Consensus 288 ~fDlVvANIla~vL~~L~-p~i~~~LkpGG~LIlSGIl 324 (327)
..|+||.---. ..++ ......+|+|++++..|--
T Consensus 250 ~aDVVItaTG~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 250 IGDIFITATGN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred cCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 46988763221 2222 3466789999999988863
No 309
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=22.35 E-value=2.3e+02 Score=27.78 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=27.9
Q ss_pred CCeeEEEEcCCh--HHHHHHHHHHhhccCCCcEEEEee
Q 041970 287 EEYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISG 322 (327)
Q Consensus 287 ~~fDlVvANIla--~vL~~L~p~i~~~LkpGG~LIlSG 322 (327)
..||+|+.=... ......+..+.+.+.|||.+++.|
T Consensus 36 ~~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g 73 (300)
T COG2813 36 DDFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVG 73 (300)
T ss_pred CCCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEe
Confidence 379999976654 344556677889999999999987
No 310
>PF00402 Calponin: Calponin family repeat; InterPro: IPR000557 Calponin [, ] is a thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin MgATPase activity. Calponin is a basic protein of approximately 34 Kd. Multiple isoforms are found in smooth muscles. Calponin contains three repeats of a well conserved 26 amino acid domain. Such a domain is also found in vertebrate smooth muscle protein (SM22 or transgelin), and a number of other proteins whose physiological role is not yet established, including Drosophila synchronous flight muscle protein SM20, Caenorhabditis elegans unc-87 protein [], rat neuronal protein NP25 [], and an Onchocerca volvulus antigen [].
Probab=22.29 E-value=41 Score=21.13 Aligned_cols=10 Identities=60% Similarity=1.102 Sum_probs=8.0
Q ss_pred cCc-ccCCCch
Q 041970 191 PGL-AFGTGEH 200 (327)
Q Consensus 191 PG~-AFGTG~H 200 (327)
-|| +||+..|
T Consensus 14 ~Gmt~~G~~R~ 24 (26)
T PF00402_consen 14 SGMTAFGTPRH 24 (26)
T ss_pred cCCccCCCCcc
Confidence 478 8998877
No 311
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=21.92 E-value=2.3e+02 Score=21.91 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=34.8
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECK 126 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~~ 126 (327)
+|.+++|.+|.+....|.+.|...++.=...+.. ..+.+.|+++.|..+
T Consensus 5 P~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~------~~~~~~i~~~iP~~~ 53 (89)
T PF00679_consen 5 PIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI------GGDRVVIEAEIPVRE 53 (89)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE------STTEEEEEEEEEGGG
T ss_pred CEEEEEEEECHHHHHHHHHHhcccccEEEechhh------hhhheeEEEEEChhh
Confidence 5889999999999999999888876632222221 124788999998653
No 312
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=21.66 E-value=2.3e+02 Score=29.28 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.6
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCC
Q 041970 226 VDIDPQVIKSAHQNAALNNIGPK 248 (327)
Q Consensus 226 VDIDp~AV~~A~eNa~lNgv~~~ 248 (327)
-+..+.+...|+.|..++++..+
T Consensus 251 qe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 251 QEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred EeCchHHHHHHHHHHHHcCCCcc
Confidence 68899999999999999887543
No 313
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=21.53 E-value=1.3e+02 Score=24.22 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=9.0
Q ss_pred CeeEEEEcCCh
Q 041970 288 EYDVVIANILL 298 (327)
Q Consensus 288 ~fDlVvANIla 298 (327)
+||+|+.|++-
T Consensus 2 kFD~VIGNPPY 12 (106)
T PF07669_consen 2 KFDVVIGNPPY 12 (106)
T ss_pred CcCEEEECCCC
Confidence 58999999863
No 314
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=21.44 E-value=6.9e+02 Score=23.49 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCchhhHHHHHHHHHhhhcCC-Ceeeeeee-----------------ecCCHHHHHHHHHH-HHhcCCC-CCcEEEEecC
Q 041970 197 TGEHATTKLCLLLLRSLIKGG-ELFLDYGT-----------------VDIDPQVIKSAHQN-AALNNIG-PKKMKLHLVP 256 (327)
Q Consensus 197 TG~H~TT~lcLe~Le~~~~~g-~~VLDvGc-----------------VDIDp~AV~~A~eN-a~lNgv~-~~~v~v~~~~ 256 (327)
.+.-.-|+..-+++.+.+..| ..|+.+|| +|+|-..+-..|+. ++.++.. ..+..+ +.
T Consensus 61 ~~~~~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~--v~ 138 (260)
T TIGR00027 61 DFIAVRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRA--VP 138 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEE--ec
Confidence 345566777777888777654 47999999 67776655555543 4444332 233433 34
Q ss_pred CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcC-----ChHHHHHHHHHHhhccCCCcEEEEe
Q 041970 257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI-----LLNPLLQLADHIVSYAKPGAVVGIS 321 (327)
Q Consensus 257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI-----la~vL~~L~p~i~~~LkpGG~LIlS 321 (327)
.|+. .++.+.+.. ..+. ...--++++-- ....+..++..+.+...||+.+++.
T Consensus 139 ~Dl~----~~w~~~L~~-------~gfd-~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 139 VDLR----QDWPAALAA-------AGFD-PTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred cCch----hhHHHHHHh-------CCCC-CCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5542 112222110 1111 12334555543 2466778999999888899998875
No 315
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=21.37 E-value=3e+02 Score=20.91 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=31.6
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPEC 125 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~ 125 (327)
+|.+++|.||.+..-.|...|....+. +.+.... ..+.+.|+++.|..
T Consensus 2 Pi~~v~i~vP~e~~G~V~~~l~~rrG~---i~~~~~~---~~~~~~i~~~~P~~ 49 (80)
T cd03709 2 PFVKATIITPSEYLGAIMELCQERRGV---QKDMEYL---DANRVMLTYELPLA 49 (80)
T ss_pred CEEEEEEEeCHHhhHHHHHHHHHhCCE---EeccEec---CCCeEEEEEECCHH
Confidence 478999999998888877777765442 2222110 11357899998854
No 316
>PRK13753 dihydropteroate synthase; Provisional
Probab=21.08 E-value=1.3e+02 Score=29.22 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=19.0
Q ss_pred eEEEccCcccCCCc-hhhHHHHHHHHHhhh
Q 041970 186 NIILNPGLAFGTGE-HATTKLCLLLLRSLI 214 (327)
Q Consensus 186 ~I~idPG~AFGTG~-H~TT~lcLe~Le~~~ 214 (327)
.|.||||+-||-|. .+.....|+.|+++.
T Consensus 169 ~IilDPGiGF~k~k~~~~n~~ll~~l~~l~ 198 (279)
T PRK13753 169 RLILDPGMGFFLSPAPETSLHVLSNLQKLK 198 (279)
T ss_pred hEEEeCCCCCCCCCChHHHHHHHHhHHHHH
Confidence 69999999997543 334444555555553
No 317
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=21.08 E-value=3e+02 Score=20.95 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=31.5
Q ss_pred CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCC
Q 041970 72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPEC 125 (327)
Q Consensus 72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~ 125 (327)
++.+++|.||.+..-.+...|.... |.. .+.+. ..+.+.|+++.|..
T Consensus 4 Pi~~~~I~~p~~~~g~v~~~l~~rr--G~i-~~~~~----~~~~~~i~~~iP~~ 50 (85)
T smart00838 4 PIMKVEVTVPEEYMGDVIGDLNSRR--GKI-EGMEQ----RGGAQVIKAKVPLS 50 (85)
T ss_pred CEEEEEEEeCHHHHHHHHHHHHHcC--CEE-ECeec----cCCcEEEEEECCHH
Confidence 5789999999988888877776543 322 22211 12367899999854
No 318
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=20.98 E-value=4.3e+02 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=26.1
Q ss_pred CCeeEEEEcCChH---H---HHHHHHHHhhccCCCcEEEE
Q 041970 287 EEYDVVIANILLN---P---LLQLADHIVSYAKPGAVVGI 320 (327)
Q Consensus 287 ~~fDlVvANIla~---v---L~~L~p~i~~~LkpGG~LIl 320 (327)
..+|+++-...+. + -..++..++++++|||+|+.
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 4699999875432 2 24688899999999999874
No 319
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=20.65 E-value=1.6e+02 Score=29.03 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=29.5
Q ss_pred CCeeEEEEcCCh--HHHHHHHHHHhhccCCCcEEEEeec
Q 041970 287 EEYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI 323 (327)
Q Consensus 287 ~~fDlVvANIla--~vL~~L~p~i~~~LkpGG~LIlSGI 323 (327)
..||+|+-=+.. ..+..++..+.++|+|||.+++.|=
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~ 113 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGE 113 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 579999877764 3455677889999999999999883
No 320
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=20.28 E-value=2.2e+02 Score=23.83 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=39.3
Q ss_pred eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-ecCCHHHHHH
Q 041970 185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-VDIDPQVIKS 235 (327)
Q Consensus 185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-VDIDp~AV~~ 235 (327)
+.|-++|..|=.+...||++.|.++.++.--+|-.|+-+=. ...||..+..
T Consensus 16 ~~I~lNPS~A~~~~~D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~p~~l~~ 67 (136)
T PF07799_consen 16 LFIGLNPSTADAEKDDPTIRRCINFARRWGYGGVIIVNLFPQRSTDPKDLKK 67 (136)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHhhcCCCeEEEEEecccccCCHHHHHh
Confidence 56789999999999999999999999765333345555555 7777887776
No 321
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=20.07 E-value=1.3e+02 Score=29.02 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=15.9
Q ss_pred eEEEccCcccCCCchhhHHHHHHHHHhh
Q 041970 186 NIILNPGLAFGTGEHATTKLCLLLLRSL 213 (327)
Q Consensus 186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~ 213 (327)
.|.+|||+.||. +.+...-.|+.|+++
T Consensus 181 ~IilDPGiGF~k-~~~~n~~ll~~l~~l 207 (282)
T PRK11613 181 KLLLDPGFGFGK-NLSHNYQLLARLAEF 207 (282)
T ss_pred hEEEeCCCCcCC-CHHHHHHHHHHHHHH
Confidence 699999988874 223333344444443
Done!