Your job contains 1 sequence.
>041971
VDETCELCSMQSEGVWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGT
GKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDI
LLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYID
NESMKQSEDINGDIIKEKECGKEADVSDVEIKPFLEFVRDRFKCIAAPLRSCIFNFCTRI
PKCYIGKDNFHVMATLISLLDSFETLLFEDNLVSEELEELLSHSVDEGLSKSIVGIKYLL
HKRRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSV
AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL
FERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGP
YSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAI
QEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTR
ARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAILAVKKELDELDEL
LNPESRLFRSQRWKVNFSENFLKSFRKLTSDPTKKSVIHLLLKLSNGWRPKKRNVDSVCG
SSLHIIKQFKVEGFYIICTIDIVKESQYFQVLKVWDILPLEDVPKVVARLDNIYVKYTAE
FINHCKEKSIEGNLEVPKTWTATSNVVRFKNLADNDNNSGSDLSGAAFDSRNYAENSNVS
ESLSLMKFYRLSSVVVSHLLSDRVGRELDLPFEVTDEQLEMILSPRSTFILGRSGTGKTT
VLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKL
CFAIKQHISQMKSSAFGGKFVAESSLIDIDDEAEFKDIPNSFADIPAESYPLVITFHKFL
MMLDGTLGSSYFDRFHDIRKHYGQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041971
(1044 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2018561 - symbol:AT1G65810 species:3702 "Arabi... 1148 1.0e-152 2
TAIR|locus:2018536 - symbol:AT1G65780 species:3702 "Arabi... 1424 9.3e-146 1
TAIR|locus:2166173 - symbol:AT5G37150 species:3702 "Arabi... 901 6.2e-129 2
TAIR|locus:2166163 - symbol:AT5G37140 species:3702 "Arabi... 877 1.9e-127 2
TAIR|locus:2173033 - symbol:AT5G52090 species:3702 "Arabi... 886 1.7e-126 2
TAIR|locus:2135472 - symbol:AT4G05540 species:3702 "Arabi... 846 3.2e-119 2
TAIR|locus:2152627 - symbol:AT5G37030 species:3702 "Arabi... 846 2.1e-111 2
TAIR|locus:2166183 - symbol:AT5G37160 species:3702 "Arabi... 872 8.0e-110 2
TAIR|locus:2059088 - symbol:AT2G19120 "AT2G19120" species... 495 3.1e-46 4
DICTYBASE|DDB_G0268924 - symbol:DDB_G0268924 "Helicase SE... 451 1.2e-45 2
DICTYBASE|DDB_G0285243 - symbol:DDB_G0285243 "putative sp... 443 2.5e-45 3
DICTYBASE|DDB_G0268660 - symbol:DDB_G0268660 "DNA2/NAM7 h... 442 4.4e-45 2
TAIR|locus:2130384 - symbol:MAA3 "MAGATAMA 3" species:370... 463 5.1e-45 3
DICTYBASE|DDB_G0289529 - symbol:DDB_G0289529 species:4468... 422 3.0e-44 2
DICTYBASE|DDB_G0268662 - symbol:DDB_G0268662 "DNA2/NAM7 h... 438 3.1e-44 2
ZFIN|ZDB-GENE-070402-1 - symbol:setx "senataxin" species:... 438 3.8e-43 2
TAIR|locus:2126480 - symbol:AT4G30100 species:3702 "Arabi... 472 3.8e-43 2
DICTYBASE|DDB_G0268914 - symbol:DDB_G0268914 species:4468... 444 1.3e-42 4
ASPGD|ASPL0000056713 - symbol:AN0646 species:162425 "Emer... 405 2.0e-42 2
CGD|CAL0003335 - symbol:SEN1 species:5476 "Candida albica... 451 1.6e-41 4
UNIPROTKB|G4ND47 - symbol:MGG_00976 "Regulator-nonsense t... 413 2.3e-41 2
CGD|CAL0003666 - symbol:NAM7 species:5476 "Candida albica... 407 5.0e-41 3
UNIPROTKB|Q5A507 - symbol:NAM7 "Putative uncharacterized ... 407 5.0e-41 3
SGD|S000004422 - symbol:SEN1 "Presumed helicase and subun... 445 7.8e-41 3
TAIR|locus:2171007 - symbol:LBA1 "LOW-LEVEL BETA-AMYLASE ... 403 1.8e-40 2
POMBASE|SPAC6G9.10c - symbol:sen1 "ATP-dependent 5' to 3'... 439 3.1e-40 4
FB|FBgn0030354 - symbol:Upf1 "Upf1" species:7227 "Drosoph... 399 1.0e-39 2
UNIPROTKB|E1C0J4 - symbol:UPF1 "Uncharacterized protein" ... 402 2.1e-39 2
UNIPROTKB|E1BEK9 - symbol:UPF1 "Uncharacterized protein" ... 402 2.2e-39 2
UNIPROTKB|E1C0J3 - symbol:UPF1 "Uncharacterized protein" ... 402 2.2e-39 2
UNIPROTKB|Q92900 - symbol:UPF1 "Regulator of nonsense tra... 402 2.2e-39 2
UNIPROTKB|E2RL81 - symbol:UPF1 "Uncharacterized protein" ... 402 2.2e-39 2
MGI|MGI:107995 - symbol:Upf1 "UPF1 regulator of nonsense ... 401 2.8e-39 2
UNIPROTKB|E1C4T7 - symbol:Gga.18015 "Uncharacterized prot... 403 3.5e-39 2
ZFIN|ZDB-GENE-040426-2836 - symbol:upf1 "upf1 regulator o... 399 4.2e-39 2
DICTYBASE|DDB_G0274399 - symbol:DDB_G0274399 "DNA2/NAM7 h... 404 5.7e-39 4
SGD|S000004685 - symbol:NAM7 "ATP-dependent RNA helicase ... 384 6.2e-39 2
UNIPROTKB|G4NIZ8 - symbol:MGG_02784 "DNA-binding protein ... 435 8.5e-39 2
POMBASE|SPAC16C9.06c - symbol:upf1 "ATP-dependent RNA hel... 387 1.9e-38 3
DICTYBASE|DDB_G0288923 - symbol:upf1 "regulator of nonsen... 396 3.2e-38 3
POMBASE|SPBC29A10.10c - symbol:SPBC29A10.10c "tRNA-splici... 438 8.5e-38 4
WB|WBGene00004880 - symbol:smg-2 species:6239 "Caenorhabd... 379 8.5e-38 2
UNIPROTKB|F1S0U6 - symbol:SETX "Uncharacterized protein" ... 341 5.1e-32 2
UNIPROTKB|Q7Z333 - symbol:SETX "Probable helicase senatax... 338 5.3e-32 2
UNIPROTKB|F1PHA4 - symbol:SETX "Uncharacterized protein" ... 339 7.5e-32 2
UNIPROTKB|E1BAS6 - symbol:SETX "Uncharacterized protein" ... 340 8.4e-32 2
MGI|MGI:2443480 - symbol:Setx "senataxin" species:10090 "... 330 4.8e-31 2
UNIPROTKB|D4AEB3 - symbol:Setx "Protein Setx" species:101... 329 6.1e-31 2
FB|FBgn0035842 - symbol:CG7504 species:7227 "Drosophila m... 330 3.9e-29 2
UNIPROTKB|P38935 - symbol:IGHMBP2 "DNA-binding protein SM... 287 2.1e-28 2
POMBASE|SPCC737.07c - symbol:SPCC737.07c "DNA polymerase ... 307 2.2e-28 2
TAIR|locus:2056896 - symbol:AT2G03270 species:3702 "Arabi... 299 5.5e-28 2
RGD|68325 - symbol:Ighmbp2 "immunoglobulin mu binding pro... 278 1.5e-27 2
UNIPROTKB|Q9EQN5 - symbol:Ighmbp2 "DNA-binding protein SM... 278 1.5e-27 2
GENEDB_PFALCIPARUM|MAL7P1.12 - symbol:MAL7P1.12 "erythroc... 333 1.9e-27 2
UNIPROTKB|Q8IC35 - symbol:MAL7P1.12 "Erythrocyte membrane... 333 1.9e-27 2
UNIPROTKB|Q60560 - symbol:IGHMBP2 "DNA-binding protein SM... 282 2.4e-27 2
SGD|S000000978 - symbol:ECM32 "DNA dependent ATPase/DNA h... 199 4.5e-27 3
UNIPROTKB|F1MHU8 - symbol:IGHMBP2 "Uncharacterized protei... 281 6.2e-27 2
MGI|MGI:99954 - symbol:Ighmbp2 "immunoglobulin mu binding... 277 6.7e-27 2
UNIPROTKB|E1BQD2 - symbol:C4H4orf21 "Uncharacterized prot... 342 8.8e-27 2
TAIR|locus:2162858 - symbol:AT5G35970 species:3702 "Arabi... 288 8.8e-27 2
UNIPROTKB|E2R760 - symbol:IGHMBP2 "Uncharacterized protei... 274 2.3e-26 2
UNIPROTKB|E2R8W1 - symbol:IGHMBP2 "Uncharacterized protei... 274 2.4e-26 2
DICTYBASE|DDB_G0271732 - symbol:DDB_G0271732 "AN1-type zi... 288 4.0e-26 3
UNIPROTKB|F1RY71 - symbol:IGHMBP2 "Uncharacterized protei... 267 6.2e-26 2
RGD|2322000 - symbol:LOC100363957 "hypothetical protein L... 333 2.3e-25 2
UNIPROTKB|F1PCI1 - symbol:C4orf21 "Uncharacterized protei... 327 2.8e-25 2
UNIPROTKB|E1BG37 - symbol:E1BG37 "Uncharacterized protein... 332 3.9e-25 2
UNIPROTKB|Q6ZU11 - symbol:Q6ZU11 "Uncharacterized protein... 325 2.8e-24 2
SGD|S000001500 - symbol:HCS1 "Hexameric DNA polymerase al... 249 2.8e-23 2
UNIPROTKB|G5EA02 - symbol:C4orf21 "Uncharacterized protei... 325 3.2e-23 2
TAIR|locus:2200996 - symbol:SDE3 "SILENCING DEFECTIVE" sp... 267 4.3e-23 2
RGD|1565575 - symbol:Setx "senataxin" species:10116 "Ratt... 179 1.4e-22 2
CGD|CAL0006154 - symbol:orf19.6199 species:5476 "Candida ... 242 4.1e-22 2
UNIPROTKB|Q5AAW1 - symbol:HCS1 "Putative uncharacterized ... 242 4.1e-22 2
FB|FBgn0033889 - symbol:CG6701 species:7227 "Drosophila m... 247 3.6e-21 2
RGD|1306791 - symbol:Dna2 "DNA replication helicase 2 hom... 260 5.2e-21 2
ZFIN|ZDB-GENE-070424-144 - symbol:si:ch211-183d5.1 "si:ch... 274 9.7e-21 3
ZFIN|ZDB-GENE-091230-8 - symbol:mov10a "Moloney leukemia ... 254 1.5e-20 2
UNIPROTKB|F1RXR7 - symbol:MOV10L1 "Uncharacterized protei... 195 2.5e-20 3
UNIPROTKB|E1BMP7 - symbol:DNA2 "DNA replication ATP-depen... 174 3.8e-20 3
UNIPROTKB|K7DXW3 - symbol:DNA2 "DNA replication nuclease ... 174 4.9e-20 3
RGD|1304735 - symbol:Mov10l1 "Mov10l1, Moloney leukemia v... 180 9.1e-20 3
UNIPROTKB|J9NRI6 - symbol:DNA2 "Uncharacterized protein" ... 167 1.1e-19 3
MGI|MGI:2443732 - symbol:Dna2 "DNA replication helicase 2... 176 3.2e-19 3
UNIPROTKB|E1BY42 - symbol:E1BY42 "Uncharacterized protein... 281 4.1e-19 2
UNIPROTKB|G3X7G5 - symbol:MOV10L1 "Uncharacterized protei... 189 4.6e-19 3
UNIPROTKB|Q9BXT6 - symbol:MOV10L1 "Putative helicase Mov1... 184 4.7e-19 3
RGD|1306056 - symbol:Pric285 "peroxisomal proliferator-ac... 247 4.9e-19 2
UNIPROTKB|E1BZJ8 - symbol:MOV10L1 "Uncharacterized protei... 175 6.2e-19 3
UNIPROTKB|Q9BYK8 - symbol:HELZ2 "Helicase with zinc finge... 246 6.3e-19 2
UNIPROTKB|E1C0Z0 - symbol:HELZ2 "Uncharacterized protein"... 238 7.8e-19 2
MGI|MGI:1891384 - symbol:Mov10l1 "Moloney leukemia virus ... 183 9.0e-19 3
UNIPROTKB|F6UZP1 - symbol:DNA2 "Uncharacterized protein" ... 166 9.8e-19 3
FB|FBgn0034187 - symbol:CG6967 species:7227 "Drosophila m... 231 9.8e-19 2
UNIPROTKB|E2RBM4 - symbol:PRIC285 "Uncharacterized protei... 243 1.0e-18 2
UNIPROTKB|E2QSH2 - symbol:E2QSH2 "Uncharacterized protein... 166 1.0e-18 3
ZFIN|ZDB-GENE-030131-9089 - symbol:mov10b.1 "Moloney leuk... 238 1.4e-18 2
UNIPROTKB|Q9P2E3 - symbol:ZNFX1 "NFX1-type zinc finger-co... 248 1.6e-18 2
WARNING: Descriptions of 73 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2018561 [details] [associations]
symbol:AT1G65810 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
EMBL:CP002684 GO:GO:0004386 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI01019905 RefSeq:NP_176757.1
UniGene:At.52388 ProteinModelPortal:F4IBK8 SMR:F4IBK8 PRIDE:F4IBK8
EnsemblPlants:AT1G65810.1 GeneID:842892 KEGG:ath:AT1G65810
OMA:DSEINKR ArrayExpress:F4IBK8 Uniprot:F4IBK8
Length = 1050
Score = 1148 (409.2 bits), Expect = 1.0e-152, Sum P(2) = 1.0e-152
Identities = 253/525 (48%), Positives = 329/525 (62%)
Query: 303 RRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM 362
R +C L L S + LP + K L+ L CL A L TASSS LH +
Sbjct: 500 RTQDC---LEMLTSISMSIKLPDFISKFELQKL----CLDNAYLLFCTASSSARLHMSS- 551
Query: 363 EPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFE 422
P+ LVIDEAAQLKE ES IPLQL G++HA+L GDE QLPAM++S +++EA GRSLFE
Sbjct: 552 -PIQLLVIDEAAQLKECESAIPLQLRGLQHAILIGDEKQLPAMIKSNIASEADLGRSLFE 610
Query: 423 RLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYS 482
RL LG++K LL++QYRMHPSIS FPN FY+ KI D+ +VR RSYEK+FL MYGPYS
Sbjct: 611 RLVLLGHNKQLLNMQYRMHPSISIFPNREFYDMKILDAPSVRLRSYEKKFLPEKMYGPYS 670
Query: 483 FINVFGGREEFIE-HSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQ 541
FIN+ GRE+F E +S +N+VEVSVV +I+ LY + +S+G++SPY AQV AIQ
Sbjct: 671 FINIAYGREQFGEGYSSKNLVEVSVVAEIVSKLYSVSRKTGRTISVGVISPYKAQVFAIQ 730
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
E++G KY F V V S+DGFQGGEED+IIISTVRSN G+IGFLSN +R NVALTRA
Sbjct: 731 ERIGEKYNTEGTFTVSVRSVDGFQGGEEDIIIISTVRSNGNGAIGFLSNQQRTNVALTRA 790
Query: 602 RHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAILAVKKXXXXXXXXX 661
R+CLWILGN TLT +SVW LV DA AR CF NA++D+ L + I
Sbjct: 791 RYCLWILGNEATLTNNRSVWRQLVDDAKARNCFHNAEEDESLAQCIERSTTALDDLNKLQ 850
Query: 662 NPESRLFRSQRWKVNFSENFLKSFRKLTSDPTKKSVIHLLLKLSNGWRPKKRNVDSVCGS 721
N + F + WKV S FLKS + K V+ L KLSNG + + V+
Sbjct: 851 NKKLISFENSIWKVWLSYEFLKSLETIVDSEINKRVMSFLEKLSNG-KELHQEVEF---E 906
Query: 722 SLHIIKQFKVE-GFYIICTIDIVKES-QYFQVLKVWDILPLEDVPKVVARLDNIYVKYTA 779
S ++++Q + + G +I IDI K + Q+ QVLK+W +LP DV +V L+ Y +YT
Sbjct: 907 SENLLRQHEFDDGLSLIWAIDIFKNNNQHVQVLKIWQVLPSTDVSRVTEHLEKHYRRYTK 966
Query: 780 EFINHCKEKSIEGNLEVPKTWTATSNVVRFKNLADNDNNSGSDLS 824
I+ C+ +G+L VP W SN K++ + + S + LS
Sbjct: 967 GKISRCRYICSQGDLVVPMQWPVDSNSCSKKDIVSDVSRSFALLS 1011
Score = 363 (132.8 bits), Expect = 1.0e-152, Sum P(2) = 1.0e-152
Identities = 75/157 (47%), Positives = 100/157 (63%)
Query: 4 TCELCSMQSEGVWNETFGPSLSS-TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGK 62
+C C SE V ++ L S LN SQ A+L CL C+H I+LIWGPPGTGK
Sbjct: 242 SCVSCKENSESVVSDYSARMLRSFKLNSSQEDAILRCLEAKSCNHSNNIKLIWGPPGTGK 301
Query: 63 TKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILL 122
TKT S+LL+ L+M+ RTL C PTN+A+ E+ +R+VKLV ES+ D + LGDI+L
Sbjct: 302 TKTTSVLLLNFLKMRCRTLTCAPTNIAVLEVCSRLVKLVSESLRFDG-----YGLGDIVL 356
Query: 123 LGNNERLKVDSGVE--EIYLDYRVKRLADCFAPLTGW 157
GN ER+K+D + +++L+YRV L CF LTGW
Sbjct: 357 FGNKERMKIDDREDLFDVFLEYRVDELYRCFMALTGW 393
Score = 39 (18.8 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 820 GSDLSGAAFDSRNYAENSNVSESLSLMKFY 849
G + G + S+N E S V+E +S K Y
Sbjct: 677 GREQFGEGYSSKNLVEVSVVAEIVS--KLY 704
>TAIR|locus:2018536 [details] [associations]
symbol:AT1G65780 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002684 GO:GO:0004386
KO:K10706 InterPro:IPR026852 PANTHER:PTHR10887:SF27 IPI:IPI00534309
RefSeq:NP_176754.1 UniGene:At.52386 ProteinModelPortal:F4IBK4
SMR:F4IBK4 PRIDE:F4IBK4 EnsemblPlants:AT1G65780.1 GeneID:842889
KEGG:ath:AT1G65780 Uniprot:F4IBK4
Length = 1065
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 332/820 (40%), Positives = 474/820 (57%)
Query: 5 CELCSMQSEGVWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTK 64
C C +Q EG ++ P LN SQ A+L+CL RC H T++LIWGPPGTGKTK
Sbjct: 219 CIQC-LQ-EG--SDGLAPRRFLKLNPSQEDAILNCLDVRRCYHANTVRLIWGPPGTGKTK 274
Query: 65 TVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLG 124
T S+LL LL K RTL C PTNV++ E+A+RV+KLV S++ + LGD++L G
Sbjct: 275 TTSVLLFTLLNAKCRTLTCGPTNVSVLEVASRVLKLVSGSLKIGN-----YGLGDVVLFG 329
Query: 125 NNERLKVDSGVE--EIYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYIDN- 181
N+ER+K+ + I++D RV +L CF P GW M+ L++ Y+ Y++N
Sbjct: 330 NDERMKIKDRKDLVNIFIDERVDKLYPCFMPFYGWKATIDGMIRLLEDPKGQYNLYLENL 389
Query: 182 ---ESMKQSEDINGDIIKEKECGKEAD------VSDVEIKPFLEFVRDRFKCIAAPLRSC 232
++K+ + G + K K G E + VSD + F +++ ++F + L
Sbjct: 390 ARANNVKRKD--TGSVFKRK--GNEQNENIVEQVSDTRPQSFQDYLPEKFSELRKDLDLH 445
Query: 233 IFNFCTRIPKCYIGKDNFHVMATLISLLDSFETLLFXXXXXXXXXXXXXXXXXXXGLSKS 292
+ CT +P + M I L+ T+L G +
Sbjct: 446 FSSLCTHLPTALLSSQAATRMYEAIDLVRDV-TILAILDGVTGEGVKSVLIPNGEGSDR- 503
Query: 293 IVGIKYLLHKRRSECHFVLRKLQSSFNEL-NLPSAVEKDLLEDLLKSFCLKRASLFLSTA 351
+ E ++ KL S E+ LP+ ++ L+++L CL A L STA
Sbjct: 504 -----FSSQHVTVEDDYL--KLLRSIPEIFPLPAVSDRHLIKEL----CLGHACLLFSTA 552
Query: 352 SSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVS 411
S S L++ P+ LVIDEAAQLKE ES+IP+QL G++H +L GDE QLPAMVES+++
Sbjct: 553 SCSARLYTGT--PIQLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQIA 610
Query: 412 NEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKR 471
EA FGRSLFERL+ LG+ K++L+IQYRMH SIS FPN Y KI D+ TVR+R+Y K+
Sbjct: 611 LEAGFGRSLFERLALLGHKKYMLNIQYRMHCSISSFPNKELYGKKILDAPTVRQRNYTKQ 670
Query: 472 FLHGPMYGPYSFINVFGGREEFIE---HSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIG 528
+L G MYGPYSFIN+ GREE+ E S +N VEV VV I+ NL + +K ++++G
Sbjct: 671 YLPGEMYGPYSFINIAYGREEYGEGEGRSLKNNVEVVVVAAIIANLLQVSEKTKTRINVG 730
Query: 529 IVSPYSAQVVAIQEKLGSKYVNSAG--FAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG 586
++SPY AQV+AIQEK+ + AG F++++ ++DGFQGGEED+II+STVRSN G +G
Sbjct: 731 VISPYKAQVIAIQEKIQETSIGDAGGLFSLRIRTVDGFQGGEEDIIIVSTVRSNGVGRVG 790
Query: 587 FLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKA 646
FL N +R NV LTRAR CLWILGN TL KSVW L+ DA R CF +A +D+ L +A
Sbjct: 791 FLGNRRRTNVLLTRARFCLWILGNEATLMNSKSVWRNLIQDAKERGCFHSAGEDESLAQA 850
Query: 647 ILAVKKXXXXXXXXXNPESRLFRSQRWKVNFSENFLKSFRKLTSDPTKKSVIHLLLKLSN 706
I + N E R + +WK+ FS+ F K ++ + T + + + L +LS
Sbjct: 851 IAST-----------NIEFRPLNNSKWKLCFSDEFKKYVGEIKNPETYRKIKNFLERLSQ 899
Query: 707 GWRPKKRNVDSVCGSSLHIIKQFKVEGFY-IICTIDIVKES-QYFQVLKVWDILPLEDVP 764
GW ++ SS ++KQ K++ II +DI+KE Y QVLK+WD++P D P
Sbjct: 900 GWLKEEETERENLVSSSQLLKQSKIDDVLRIIWAVDILKEDFHYDQVLKIWDVVPSSDAP 959
Query: 765 KVVARLDNIYVKYTAEFINHCKEKSIEGNLEVPKTWTATS 804
+ + RLD + YT + I CK + I G++ VP W+ S
Sbjct: 960 EALKRLDLNHTNYTKDEIEKCKARCIRGDIVVPMRWSIES 999
>TAIR|locus:2166173 [details] [associations]
symbol:AT5G37150 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004386
KO:K10706 IPI:IPI01020555 RefSeq:NP_198531.2 UniGene:At.55176
ProteinModelPortal:F4K5W5 SMR:F4K5W5 PRIDE:F4K5W5
EnsemblPlants:AT5G37150.1 GeneID:833688 KEGG:ath:AT5G37150
OMA:RSVDEYY Uniprot:F4K5W5
Length = 839
Score = 901 (322.2 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 183/350 (52%), Positives = 246/350 (70%)
Query: 302 KRRS-ECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSV 360
KR S +C LR L F +P +E ED+ K FCL+ A + L TAS + ++
Sbjct: 470 KRLSVDCLKALRLLPKRFE---IPDMLEN---EDIRK-FCLQNADIILCTASGAAEMNVE 522
Query: 361 AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL 420
+ LV+DEAAQLKE ES LQL G++HA+L GDE QLPAMV +++ +A FGRSL
Sbjct: 523 RTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHNEMCEKAKFGRSL 582
Query: 421 FERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGP 480
FERL LG++KHLL +QYRMHPSIS FPN FY +I+D+ V++ Y+KRFL G M+G
Sbjct: 583 FERLVLLGHNKHLLDVQYRMHPSISRFPNKEFYGGRIKDAENVKESIYQKRFLQGNMFGS 642
Query: 481 YSFINVFGGREEFIE-HSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVA 539
+SFINV G+EEF + HS +NMVEV+VV +I+ NL+K + + K+S+G+VSPY Q+ A
Sbjct: 643 FSFINVGRGKEEFGDGHSPKNMVEVAVVSEIISNLFKVSCERRMKVSVGVVSPYKGQMRA 702
Query: 540 IQEKLGSKYVNSAG--FAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
IQEK+G KY + +G FA+ V S+DGFQGGEED+IIISTVRSN+ G +GFL+N +R NVA
Sbjct: 703 IQEKIGDKYSSLSGQQFALNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLNNRQRANVA 762
Query: 598 LTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAI 647
LTRARHCLW++GN TL S+W L+ ++ R CF++A D+ +L A+
Sbjct: 763 LTRARHCLWVIGNETTLALSGSIWATLISESRTRGCFYDATDEMNLRNAM 812
Score = 385 (140.6 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 84/232 (36%), Positives = 138/232 (59%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
S+ LN SQ A+L CL C HK +++LIWGPPGTGKTKTV+ LL LL+++ +T+VC
Sbjct: 218 STKLNSSQEDAILGCLETRNCTHKNSVKLIWGPPGTGKTKTVATLLFALLKLRCKTVVCA 277
Query: 85 PTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERL---KVDSGVEEIYLD 141
PTN AI ++A+R++ L KE+ + +A + LG+I+L GN +R+ K D + +++LD
Sbjct: 278 PTNTAIVQVASRLLSLFKENSTSE--NATY-RLGNIILSGNRDRMGIHKNDHVLLDVFLD 334
Query: 142 YRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYIDNESMKQSEDINGDIIKEKECG 201
R+ +L F+P +GW S++ FL+N Y ++ +++ E + E+E
Sbjct: 335 ERIGKLGKLFSPFSGWMQRLESLIQFLENPEGKYERHV--YELEEVERM------EEEAE 386
Query: 202 KEADVSDVEIKPFLEFVRDRFKCIAAPLRSCIFNFCTRIPKCYIGKDNFHVM 253
++ V V I EFV+ F ++ + +CI + T +PK Y+ D+ +M
Sbjct: 387 RQEVV--VNIPTIGEFVKKNFNSLSEEVETCIVDLFTHLPKVYLPYDDVKIM 436
Score = 44 (20.5 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 864 VGRELDLPFEVTDEQLEMILSPRSTFI-LGRSGTGKTTVLTRKLFQKEELHRMAMEEFYG 922
+G E LP V +E E RS F L G K +L + + R +EFYG
Sbjct: 558 IGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKH-LLDVQYRMHPSISRFPNKEFYG 616
Score = 43 (20.2 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 319 NELNLPSAVEKDLLEDLLKS 338
+E+NL +A+ + LLED+ S
Sbjct: 804 DEMNLRNAMNEALLEDVSSS 823
>TAIR|locus:2166163 [details] [associations]
symbol:AT5G37140 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00534313 RefSeq:NP_198530.1 UniGene:At.55175
ProteinModelPortal:F4K5W4 SMR:F4K5W4 PRIDE:F4K5W4
EnsemblPlants:AT5G37140.1 GeneID:833686 KEGG:ath:AT5G37140
OMA:TEAKYEH ArrayExpress:F4K5W4 Uniprot:F4K5W4
Length = 692
Score = 877 (313.8 bits), Expect = 1.9e-127, Sum P(2) = 1.9e-127
Identities = 177/329 (53%), Positives = 236/329 (71%)
Query: 323 LPSAVE-KDLLEDL-LKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESE 380
LP E D+LE+ K+FCL+ A + TAS + ++ + ++ LV+DEAAQLKE E
Sbjct: 341 LPERFEVSDMLENNDTKTFCLQNADIIFCTASGAADMNPIRTGSVDLLVVDEAAQLKECE 400
Query: 381 STIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRM 440
S LQLSG++HAVL GDE QLPAMV NEA FGRSLFERL LG++KHLL++QYRM
Sbjct: 401 SVAALQLSGLRHAVLIGDELQLPAMVH----NEAKFGRSLFERLVLLGHNKHLLNVQYRM 456
Query: 441 HPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIE-HSCR 499
HPSIS FPN FY +I+D++ V++ Y+KRFL G M+G +SFINV G EEF + HS +
Sbjct: 457 HPSISRFPNKEFYGGRIKDAANVQESIYQKRFLQGNMFGSFSFINVGRGEEEFGDGHSPK 516
Query: 500 NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAG-FAVKV 558
NMVEV+V+ +I+ NL+K + + K+S+G+VSPY QV AIQE+ +KY + +G F + V
Sbjct: 517 NMVEVAVISEIISNLFKVSSERRIKMSVGVVSPYKGQVRAIQERTTNKYSSLSGLFTLNV 576
Query: 559 MSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKK 618
S+DGFQGGEED+IIISTVRSN G +GFL+N +R NVALTRARHCLW++GN TL
Sbjct: 577 RSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHCLWVIGNETTLALSG 636
Query: 619 SVWEALVHDANARQCFFNADDDKDLGKAI 647
S W L+ ++ CF++A D+K+L A+
Sbjct: 637 SSWAKLISESRTLGCFYDAADEKNLRDAM 665
Score = 395 (144.1 bits), Expect = 1.9e-127, Sum P(2) = 1.9e-127
Identities = 86/233 (36%), Positives = 136/233 (58%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
S+ LN SQ A+LSCL+ C+HK +++LIWGPPGTGKTKTV+ LL LL++ +T+VC
Sbjct: 71 SAKLNSSQEAAILSCLKIRNCNHKHSVKLIWGPPGTGKTKTVATLLFCLLKLSCKTVVCA 130
Query: 85 PTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERL--KVDSGVEEIYLDY 142
PTN AI E+ +R++ L K S + LG+I+L GN R+ K + + +++LD
Sbjct: 131 PTNTAIVEVTSRLLSLFKTSSSEHST----YGLGNIVLSGNQARMGIKENDVLLDVFLDE 186
Query: 143 RVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYIDNESMKQSEDINGDIIKEKECGK 202
R+ L F+P +GW S++DFL+N + Y Y+ +K+ E ++ + K+K+ G
Sbjct: 187 RIGILTSLFSPTSGWKQRLESLIDFLENTEAKYEHYV--HLLKEVERMSEEAEKKKK-GA 243
Query: 203 EADVSDVEIKPFLEFVRDRFKCIAAPLRSCIFNFCTRIPKCYIGKDNFHVMAT 255
+ ++I F EFV+ F + L + + T +PK +I +N M T
Sbjct: 244 DKKPKAIKILTFGEFVKKTFDGFSEELEKGMVDLWTHLPKSFITSENVKSMVT 296
Score = 43 (20.2 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 319 NELNLPSAVEKDLLEDLLKSF 339
+E NL A+ + LLED+ SF
Sbjct: 657 DEKNLRDAMNEALLEDVSTSF 677
>TAIR|locus:2173033 [details] [associations]
symbol:AT5G52090 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0004519 eggNOG:COG1112
EMBL:AB015478 KO:K10706 IPI:IPI00525648 RefSeq:NP_200022.1
UniGene:At.65668 ProteinModelPortal:Q9FJ83 SMR:Q9FJ83 PRIDE:Q9FJ83
EnsemblPlants:AT5G52090.1 GeneID:835285 KEGG:ath:AT5G52090
TAIR:At5g52090 HOGENOM:HOG000083772 InParanoid:Q9FJ83 OMA:TACEASE
PhylomeDB:Q9FJ83 ProtClustDB:CLSN2686886 Genevestigator:Q9FJ83
Uniprot:Q9FJ83
Length = 676
Score = 886 (316.9 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 181/350 (51%), Positives = 242/350 (69%)
Query: 302 KRRSE-CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSV 360
KR S+ C LR L F +P +E ED+ K FCL+ A + L TAS + ++
Sbjct: 307 KRLSDDCLKALRLLPKRFE---IPDMLEN---EDIRK-FCLQNADIILCTASGAAEMNVE 359
Query: 361 AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL 420
+ LV+DEAAQLKE ES LQL G++HA+L GDE QLPAMV +++ +A FGRSL
Sbjct: 360 RTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHNEMCEKAKFGRSL 419
Query: 421 FERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGP 480
FERL LG++KHLL +QYRMHPSIS FPN FY +I+D+ V++ Y+KRFL G M+
Sbjct: 420 FERLVLLGHNKHLLDVQYRMHPSISRFPNKEFYGGRIKDAENVKESIYQKRFLKGNMFDS 479
Query: 481 YSFINVFGGREEFIE-HSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVA 539
+SFINV G+EEF + HS +NMVEV+V+ +I+ NLYK + + K+S+G+VSPY Q+ A
Sbjct: 480 FSFINVGRGKEEFGDGHSPKNMVEVAVISEIISNLYKVSCERRMKVSVGVVSPYKGQMRA 539
Query: 540 IQEKLGSKYVNSAG--FAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
IQEK+G KY + +G F + V S+DGFQGGEED+IIISTVRSN G +GFL+N +R NVA
Sbjct: 540 IQEKIGDKYSSLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVA 599
Query: 598 LTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAI 647
LTRARHCLW++GN TL S+W L+ ++ R CF +A D+ +L A+
Sbjct: 600 LTRARHCLWVIGNETTLALSGSIWATLISESRTRGCFHDATDEMNLRDAM 649
Score = 377 (137.8 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 88/246 (35%), Positives = 144/246 (58%)
Query: 3 ETCELCSMQSEGVWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGK 62
E C CS +++G + S+ LN SQ A+L CL C HK +++LIWGPP TGK
Sbjct: 35 EQC-FCS-ENDGRSDLVLDIIRSTKLNSSQEDAILGCLETRNCTHKNSVKLIWGPPRTGK 92
Query: 63 TKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILL 122
TKTV+ LL LL+++ +T+VC PTN AI ++ +R++ L KE+ + +A + LG+I+L
Sbjct: 93 TKTVATLLFALLKLRCKTVVCAPTNTAIVQVTSRLLSLFKENSTAE--NATY-RLGNIIL 149
Query: 123 LGNNERL---KVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYI 179
GN +R+ K D + +++LD R+ +L F+P +GW S++ FL+N Y ++
Sbjct: 150 SGNRDRMGINKNDHVLLDVFLDERIGKLGKLFSPFSGWMQRLESLIQFLENPEGKYERHV 209
Query: 180 DNESMKQSEDINGDIIKEKECGKEADVSDVEIKPFLEFVRDRFKCIAAPLRSCIFNFCTR 239
+++ E +N +E E +E V V I F EFV+ F ++ +++CI + T
Sbjct: 210 --YELEEVERMN----EEDE--REEVV--VNIPTFGEFVQKNFNSLSEEVKTCIVDLYTH 259
Query: 240 IPKCYI 245
+PK Y+
Sbjct: 260 LPKVYL 265
Score = 44 (20.5 bits), Expect = 3.1e-31, Sum P(3) = 3.1e-31
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 864 VGRELDLPFEVTDEQLEMILSPRSTFI-LGRSGTGKTTVLTRKLFQKEELHRMAMEEFYG 922
+G E LP V +E E RS F L G K +L + + R +EFYG
Sbjct: 395 IGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKH-LLDVQYRMHPSISRFPNKEFYG 453
Score = 43 (20.2 bits), Expect = 3.1e-31, Sum P(3) = 3.1e-31
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 738 CTIDIVKESQYFQVLKVWDILPLEDVPKVVARLDNIY-VKY 777
C +D+ Y + KV+ LP EDV K++A + ++Y
Sbjct: 252 CIVDL-----YTHLPKVY--LPYEDVKKMIASRQTLQRIRY 285
Score = 42 (19.8 bits), Expect = 7.2e-31, Sum P(2) = 7.2e-31
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 319 NELNLPSAVEKDLLEDLLKS 338
+E+NL A+ + LLED+ S
Sbjct: 641 DEMNLRDAMNEALLEDVSSS 660
>TAIR|locus:2135472 [details] [associations]
symbol:AT4G05540 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002687 GO:GO:0004386
KO:K10706 IPI:IPI00530269 RefSeq:NP_567301.2 UniGene:At.54170
ProteinModelPortal:F4JGH5 SMR:F4JGH5 PRIDE:F4JGH5
EnsemblPlants:AT4G05540.1 GeneID:825906 KEGG:ath:AT4G05540
OMA:WVIGNER Uniprot:F4JGH5
Length = 689
Score = 846 (302.9 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 173/317 (54%), Positives = 227/317 (71%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLN 366
C LR L+ +P+ + K ED+ ++FCL+ A + TAS + + + ++
Sbjct: 377 CVDCLRTLRLLSKRFEIPALLMK---EDI-RTFCLQNAHIIFCTASGAAEMTAERAGSID 432
Query: 367 FLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSY 426
LV+DEAAQLKE ES LQL G+ HAVL GDE QLPAMV+S+V +A F RSLFERL
Sbjct: 433 MLVVDEAAQLKECESVAALQLQGLHHAVLIGDELQLPAMVQSEVCEKAKFVRSLFERLDS 492
Query: 427 LGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINV 486
LG+ KHLL++QYRMHPSIS FPN FY KI D+ V++ +Y+KRFL G M+G +SFINV
Sbjct: 493 LGHKKHLLNVQYRMHPSISLFPNMEFYGGKISDAEIVKESTYQKRFLQGNMFGSFSFINV 552
Query: 487 FGGREEFIE-HSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLG 545
G+EEF + HS +NMVE++VV +IL NL K ++K K+S+G++SPY AQV AIQE++G
Sbjct: 553 GLGKEEFGDGHSPKNMVEIAVVSEILTNLLKVSSETKTKMSVGVISPYKAQVSAIQERIG 612
Query: 546 SKYVNSAG--FAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARH 603
KY + + F + V S+DGFQGGEED+IIISTVRSN G+IGFLSN +R NVALTRARH
Sbjct: 613 DKYTSVSDNLFTLNVRSVDGFQGGEEDIIIISTVRSNCNGNIGFLSNRQRANVALTRARH 672
Query: 604 CLWILGNARTLTRKKSV 620
CLW++GN RTL+ S+
Sbjct: 673 CLWVIGNERTLSLSGSI 689
Score = 348 (127.6 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 86/274 (31%), Positives = 141/274 (51%)
Query: 9 SMQSEGVWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSM 68
S+ S N S+ LN SQ A+L+CL K +++LIWGPPGTG TKTV+
Sbjct: 90 SVSSRNWGNHVLDIIRSANLNSSQESAILACLETREIRDKTSVKLIWGPPGTGNTKTVAT 149
Query: 69 LLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNER 128
LL LL + +T+VCTPTN A+ +A+R++ L KES + + LG+I+L+GN R
Sbjct: 150 LLFALLSLSCKTVVCTPTNTAVVAVASRLLALFKESSSTEHST---YGLGNIVLVGNRVR 206
Query: 129 LKVDS-GVEE---IYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYI----- 179
+ +D G ++ ++LD R+ +L + F+P W +++D L+N S Y Y+
Sbjct: 207 MGIDERGNDDLLNVFLDDRISKLGELFSPSNEWERSLEAVIDILENAESSYKKYLLLSER 266
Query: 180 -DNESMKQSEDINGDIIKEKECG-KEADVSDVEI-KPFLEFVRDRFKCIAAPLRSC---I 233
+N+ K G+ + + G KE + EI F EFV ++F ++ ++ +
Sbjct: 267 KENQETKNILTAFGEFVMKMFLGSKETPEKEEEIILTFGEFVMEKFDGLSETMKKIQKDM 326
Query: 234 FNFCTRIPKCYIGKDNFHVMATLISLLDSFETLL 267
+ T +PK ++ ++ M L T L
Sbjct: 327 VDLYTHLPKSFLSSNDVKNMIVARQALRQARTFL 360
Score = 41 (19.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 18/59 (30%), Positives = 22/59 (37%)
Query: 864 VGRELDLPFEVTDEQLEMILSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYG 922
+G EL LP V E E RS F S K +L + + EFYG
Sbjct: 462 IGDELQLPAMVQSEVCEKAKFVRSLFERLDSLGHKKHLLNVQYRMHPSISLFPNMEFYG 520
>TAIR|locus:2152627 [details] [associations]
symbol:AT5G37030 species:3702 "Arabidopsis thaliana"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] EMBL:CP002688 GO:GO:0004519 KO:K10706
IPI:IPI00540124 RefSeq:NP_198519.1 UniGene:At.55172
ProteinModelPortal:F4K5V7 SMR:F4K5V7 PRIDE:F4K5V7
EnsemblPlants:AT5G37030.1 GeneID:833673 KEGG:ath:AT5G37030
Uniprot:F4K5V7
Length = 638
Score = 846 (302.9 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 174/322 (54%), Positives = 226/322 (70%)
Query: 342 KRASLFLSTASSSYMLHSVA--MEP-------LNFLVIDEAAQLKESESTIPLQLSGIKH 392
K LFLST L S+ +E + LV+DEAAQLKE ES LQL G++H
Sbjct: 316 KLRKLFLSTCGWKQSLESIIDLLENTETKTGNIEVLVVDEAAQLKECESVAALQLPGLRH 375
Query: 393 AVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYF 452
A+L GDE QLPAMV + +A FGRSLFERL LG+ KHLL +QYRMHPSIS FP F
Sbjct: 376 AILIGDEFQLPAMVHNDQCEKAKFGRSLFERLVLLGHKKHLLDVQYRMHPSISRFPYKEF 435
Query: 453 YENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIE-HSCRNMVEVSVVMKIL 511
Y +I+D++ V++ Y+KRFL G M+G +SFINV G+EEF + S +NMVEV+VV +I+
Sbjct: 436 YGGRIKDAANVQESIYQKRFLQGNMFGSFSFINVGRGKEEFGDGDSPKNMVEVAVVSEII 495
Query: 512 LNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAG--FAVKVMSIDGFQGGEE 569
NL+K + K K+S+G+++PY QV AIQE++ KY + +G F V V S+DGFQGGEE
Sbjct: 496 SNLFKVSRERKMKMSVGVITPYKGQVRAIQERIRDKYSSLSGELFTVNVRSVDGFQGGEE 555
Query: 570 DLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDAN 629
D+IIISTVRSN+ G +GFLSN +R NVALTRARHCLW++GN TL R S+W L+ D+
Sbjct: 556 DIIIISTVRSNSNGKVGFLSNRQRANVALTRARHCLWVIGNESTLARSGSIWANLISDSK 615
Query: 630 ARQCFFNADDDKDLGKAILAVK 651
R+CF++A DDK L A+ AV+
Sbjct: 616 RRKCFYDAKDDKRLRDAMNAVQ 637
Score = 274 (101.5 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 58/148 (39%), Positives = 92/148 (62%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
SS LN SQ A+LSCL +HK +++LIWGP KTKTV+ LL++LL+++ +T+VC
Sbjct: 201 SSKLNSSQEAAILSCLETRDSNHKNSVKLIWGPL---KTKTVATLLLVLLKLRCKTVVCA 257
Query: 85 PTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV-DSG-VEEIYLDY 142
PTN AI E+ +R++ L + E + LG+I L GN +R+++ D+ + ++LD+
Sbjct: 258 PTNTAIVEVTSRLLALSNKYSEHAT-----YGLGNIFLAGNQKRMRIKDTDYLRNVFLDH 312
Query: 143 RVKRLADCFAPLTGWSHCFASMVDFLDN 170
R+ +L F GW S++D L+N
Sbjct: 313 RISKLRKLFLSTCGWKQSLESIIDLLEN 340
Score = 48 (22.0 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 864 VGRELDLPFEVTDEQLEMILSPRSTF----ILGRSGTGKTTVLTRKLFQKEELHRMAMEE 919
+G E LP V ++Q E RS F +LG K +L + + R +E
Sbjct: 379 IGDEFQLPAMVHNDQCEKAKFGRSLFERLVLLGH----KKHLLDVQYRMHPSISRFPYKE 434
Query: 920 FYG 922
FYG
Sbjct: 435 FYG 437
>TAIR|locus:2166183 [details] [associations]
symbol:AT5G37160 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00521499 RefSeq:NP_198532.1 UniGene:At.55177
ProteinModelPortal:F4K5W6 SMR:F4K5W6 PRIDE:F4K5W6
EnsemblPlants:AT5G37160.1 GeneID:833689 KEGG:ath:AT5G37160
OMA:WAELISE Uniprot:F4K5W6
Length = 871
Score = 872 (312.0 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 174/320 (54%), Positives = 230/320 (71%)
Query: 333 EDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKH 392
ED+ K FCL+ A + TASS ++ + ++ LV+DE AQLKE ES LQL G+ H
Sbjct: 529 EDIRK-FCLQNADIIFCTASSVANINPARIGSVDLLVVDETAQLKECESVAALQLPGLCH 587
Query: 393 AVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYF 452
A+L GDE QLPAMV ++ ++A FGRSLFERL +G+SKHLL++QYRMHPSIS FPN F
Sbjct: 588 ALLIGDEYQLPAMVHNEECDKAKFGRSLFERLVLIGHSKHLLNVQYRMHPSISRFPNKEF 647
Query: 453 YENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIE-HSCRNMVEVSVVMKIL 511
Y +I D++ V++ YEKRFL G M+G +SFINV G+EEF + HS +NMVEV+V+ KI+
Sbjct: 648 YGGRITDAANVQESIYEKRFLQGNMFGTFSFINVGRGKEEFGDGHSPKNMVEVAVISKII 707
Query: 512 LNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAG----FAVKVMSIDGFQGG 567
NL+K K+K+S+G++SPY QV AIQE++G KY NS F + V S+DGFQGG
Sbjct: 708 SNLFKVSSQRKQKMSVGVISPYKGQVRAIQERVGDKY-NSLSVDQLFTLNVQSVDGFQGG 766
Query: 568 EEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHD 627
E D+IIISTVR N G++GFLSN +R NVALTRARHCLW++GN TL S+W L+ +
Sbjct: 767 EVDVIIISTVRCNVNGNVGFLSNRQRANVALTRARHCLWVIGNGTTLALSGSIWAELISE 826
Query: 628 ANARQCFFNADDDKDLGKAI 647
+ R CF++A DDK+L A+
Sbjct: 827 SRTRGCFYDAVDDKNLRDAM 846
Score = 233 (87.1 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 74/265 (27%), Positives = 128/265 (48%)
Query: 3 ETCELCSMQSEGVWNETFGPSL-SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTG 61
E C C +G ++ + S+ LN SQ A+L L+ C HK +++LIWGPPGTG
Sbjct: 218 EQCFSCENDVDGSDSDRVVDIIRSAKLNSSQEAAILGFLKTRNCKHKESVKLIWGPPGTG 277
Query: 62 KTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESVE-RDCRDALFFPLG-- 118
KTKTV+ LL L+Q+K +T+VC PTN I +A+R++ L KE++ A+ +
Sbjct: 278 KTKTVATLLSTLMQLKCKTVVCAPTNTTIVAVASRLLSLSKETIVCAPTNSAIAEVVSRF 337
Query: 119 --DILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYH 176
L G + + G+ I L +R+ +T S+ V F D L
Sbjct: 338 EFSTLFYGTSILERTTYGMGNIVLSGNRERMG-----IT--SNKVLLNVFFNDRVSKLGR 390
Query: 177 TYIDNESMKQSEDINGDIIKEKECGKEADVSDVEIKPFLEFVRDRFKCIAAPLRSC-IFN 235
++ K+ + D ++ E E V+++E++ E + + + ++ + +
Sbjct: 391 LFLSTCGWKKRLESIIDFLENTETKYEQHVNELELERMTEDEKKKEEVEERTMQEVDMAD 450
Query: 236 FCTRIPKCYIG-KDNFHVMATLISL 259
T +PK +I KD +++A +L
Sbjct: 451 LSTHLPKSFISSKDVKNLIAACQAL 475
Score = 43 (20.2 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 864 VGRELDLPFEVTDEQLEMILSPRSTFI-LGRSGTGKTTVLTRKLFQKEELHRMAMEEFYG 922
+G E LP V +E+ + RS F L G K +L + + R +EFYG
Sbjct: 591 IGDEYQLPAMVHNEECDKAKFGRSLFERLVLIGHSKH-LLNVQYRMHPSISRFPNKEFYG 649
>TAIR|locus:2059088 [details] [associations]
symbol:AT2G19120 "AT2G19120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] GO:GO:0009506
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0004386 GO:GO:0004519
eggNOG:COG1112 EMBL:AC002392 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI00542366 PIR:T00533
RefSeq:NP_179502.1 UniGene:At.52824 ProteinModelPortal:O64476
SMR:O64476 PaxDb:O64476 PRIDE:O64476 EnsemblPlants:AT2G19120.1
GeneID:816429 KEGG:ath:AT2G19120 TAIR:At2g19120
HOGENOM:HOG000084788 InParanoid:O64476 OMA:DWAALIS PhylomeDB:O64476
ProtClustDB:CLSN2683158 ArrayExpress:O64476 Genevestigator:O64476
Uniprot:O64476
Length = 1090
Score = 495 (179.3 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 118/323 (36%), Positives = 174/323 (53%)
Query: 319 NELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKE 378
N NL A + LE SF + +F + +SS L S + +VIDEAAQ E
Sbjct: 734 NNFNLEEA--RASLE---ASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASE 788
Query: 379 SESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQY 438
PL L G VL GD QLPA V SK + + RSLFER G LL++QY
Sbjct: 789 VGVLPPLAL-GAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQLAGCPTLLLTVQY 847
Query: 439 RMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSC 498
RMHP I FP+ YFY+ +++DS ++ ++ + P+ PY F N+ GRE S
Sbjct: 848 RMHPQIRDFPSRYFYQGRLKDSESISSAP-DEIYYKDPVLRPYLFFNISHGRESHRGGSV 906
Query: 499 --RNMVEVSVVMKILLNLYKAWID-SKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFA 555
N+ E + + ++L K K+S+G+++PY Q+ ++ + G+
Sbjct: 907 SYENVDEARFCVGVYMHLQKTLKSLGAGKVSVGVITPYKLQLKCLKHEFGNALGQDELKE 966
Query: 556 VKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLT 615
+ + ++D FQG E D+II+S VR++ G +GF+S+ +R+NVALTRAR LW++GNA L
Sbjct: 967 IYINTVDAFQGQERDVIIMSCVRASGHG-VGFVSDIRRMNVALTRARRALWVMGNASALM 1025
Query: 616 RKKSVWEALVHDANARQCFFNAD 638
+ + W AL+ DA R CF D
Sbjct: 1026 KSED-WAALISDARGRNCFMEMD 1047
Score = 66 (28.3 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 53 LIWGPPGTGKTKTV-SMLLVILL 74
L+ GPPGTGKT TV ML VI L
Sbjct: 499 LVQGPPGTGKTHTVWGMLNVIHL 521
Score = 57 (25.1 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 77 KFRTLVCTPTNVAIKELAARVV 98
K R LVC P+N A EL +RV+
Sbjct: 578 KPRMLVCAPSNAATDELLSRVL 599
Score = 38 (18.4 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 1 VDETCELCSMQSEGVWNETFGPSLSSTLNDSQAQAVLSCLR-QMR 44
+D++ L ++ + +W+ T SL++T + A S L QM+
Sbjct: 385 IDDSHILRKLKPQDIWHLTVLGSLATTQREYVALHAFSRLNPQMQ 429
>DICTYBASE|DDB_G0268924 [details] [associations]
symbol:DDB_G0268924 "Helicase SEN1" species:44689
"Dictyostelium discoideum" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268924
GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112
ProtClustDB:CLSZ2429765 RefSeq:XP_646844.2
ProteinModelPortal:Q55F26 EnsemblProtists:DDB0202279 GeneID:8616527
KEGG:ddi:DDB_G0268924 InParanoid:Q55F26 Uniprot:Q55F26
Length = 1772
Score = 451 (163.8 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 111/298 (37%), Positives = 168/298 (56%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLF 396
KS + RAS+ ST S S + +++DE+ Q E S IPL + I+ +L
Sbjct: 1351 KSDSIYRASIVFSTLSGSGSETVKNNFRADIILVDESTQSTEPSSIIPLCIGNIEKLILV 1410
Query: 397 GDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENK 456
GD QLP + S S E SLFERLS + +L +QYRMHP+IS FP++ FY ++
Sbjct: 1411 GDPLQLPPTIFSTESAENGLNISLFERLSKV-LPVEMLHVQYRMHPTISRFPSNQFYRDR 1469
Query: 457 IRDSSTVRKRSYEKRFLHGPM-YGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLY 515
+ D V+ Y + H + YGP F +V +EE + S +N +E+++V ++ L
Sbjct: 1470 LLDGDNVKSLVYNQHNFHSDIKYGPIRFYDVIDSKEESGKRSLKNKLEITMVFTLIKKLV 1529
Query: 516 KAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIIS 575
+ + + K K S GI++PY Q I+E+ K N ++ +IDGFQG E+D+II+S
Sbjct: 1530 QDYPECK-KFSFGIITPYKLQKSEIKEQ--HKQFNYP-LNIETSTIDGFQGSEKDIIILS 1585
Query: 576 TVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEAL---VHDANA 630
VRS IGFLS+ +R+NVALTRA+ L+++GN++ L +K W VH N+
Sbjct: 1586 CVRSER---IGFLSDRRRINVALTRAKFGLFVIGNSKLL-KKDRTWGPFCQYVHSINS 1639
Score = 123 (48.4 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 51 IQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTNVAIKELAARVVKLVKESVERD 108
I LI GPPGTGKT T+ LL ILL + +F+ LVC P++ ++ E+A R K K+ + D
Sbjct: 1260 ITLIQGPPGTGKTTTIYYLLSILLAINPEFKILVCGPSHASVDEIAKRCSK--KKLIGLD 1317
Query: 109 CRDALFFPLGDILLLGNNERLKVD 132
+ + P +++ +G E + D
Sbjct: 1318 GKP--YLP--NMVRIGKKENISPD 1337
Score = 38 (18.4 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 26/96 (27%), Positives = 38/96 (39%)
Query: 50 TIQLIWGPPGTGKTKTVSMLLVIL--LQMKFRTLVCTPTNVAIKELAA----RVVKLVK- 102
TI L P T +T S+L+ L ++ F T V +K + R + VK
Sbjct: 288 TINLSPTPQITTETINSSILIDSLEDIENYFPTFQSKIQEVLLKSSSKFFLLRKINNVKY 347
Query: 103 -ESVERDCRDALFFPLGDILLLGNNERLKVDSGVEE 137
S+ + FF D+L NN K D +E
Sbjct: 348 TASIHVSSKFPTFFQRNDLLYYNNNNNNK-DEDEDE 382
>DICTYBASE|DDB_G0285243 [details] [associations]
symbol:DDB_G0285243 "putative splicing endonuclease"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0285243 EMBL:AAFI02000076 KO:K10706
InterPro:IPR024481 Pfam:PF12726 RefSeq:XP_002649136.1
ProteinModelPortal:C7G036 EnsemblProtists:DDB0252844 GeneID:8625002
KEGG:ddi:DDB_G0285243 OMA:DSINMIF Uniprot:C7G036
Length = 2069
Score = 443 (161.0 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
Identities = 114/312 (36%), Positives = 173/312 (55%)
Query: 343 RASLFLSTASSS-YMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQ 401
R+ + LST S S Y A + + +++DEAAQ E + IPL+ +K +L GD Q
Sbjct: 1584 RSQIILSTLSGSGYDYLFTATKNFDLVIVDEAAQAVELSTLIPLR-HDVKKCILVGDPQQ 1642
Query: 402 LPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
LP SKV+ + + SLF+RL G + +L QYRMHP IS FP+ FY ++ D
Sbjct: 1643 LPPTTISKVATKFQYEISLFQRLMNCGMAPTVLKTQYRMHPMISKFPSKIFYRGELEDGK 1702
Query: 462 TVRKRSYEKRFLH--GPMYGPYSFINVFGGREEFIEH--SCRNMVEVSVVMKILLNLYKA 517
VR+ Y++ + + +GP F ++F E S RN EV + I+ L
Sbjct: 1703 NVRE--YKQDYYNDSASRFGPLVFYDLFDKHGEVRSSFFSLRNPTEVKLAKLIVDQLISN 1760
Query: 518 WIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTV 577
+ ++K+ L IG+++PY +Q V + Y N V+V +IDGFQG E+D +I S+V
Sbjct: 1761 YPNTKD-LEIGVITPYKSQSVDLFNAFKG-YQN-----VEVSTIDGFQGKEKDFVIFSSV 1813
Query: 578 RSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDAN-ARQCFFN 636
R+++G SIGFLS+ +R+NV LTRA++ + ILGN+ L+ W LV+D C+F
Sbjct: 1814 RAHSGHSIGFLSDIRRMNVGLTRAKYSMVILGNSSLLSNNDD-WGNLVNDLRQTNNCYFP 1872
Query: 637 ADDDKDLGKAIL 648
K + K +L
Sbjct: 1873 ISS-KSIDKGVL 1883
Score = 129 (50.5 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
Identities = 45/138 (32%), Positives = 70/138 (50%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLL----VILLQMKF- 78
L S+LN+SQ A+ S L+ + L+ GPPGTGKTKT+ LL +L ++
Sbjct: 1368 LRSSLNESQLSAIASTLKNL-----GGFSLLQGPPGTGKTKTILSLLSVFTTVLTNIEKS 1422
Query: 79 ----RTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV--- 131
+ LVC P+N A+ E+A R+ K ++++ F P+ I +GN +
Sbjct: 1423 HSDPKILVCAPSNAAVDEIALRIKK--DGLIDKNGNK--FKPV--ICRIGNQSHIHPSVQ 1476
Query: 132 DSGVEEIYL-DYRVKRLA 148
D VE + L +Y+ K A
Sbjct: 1477 DISVESLILGEYKDKNSA 1494
Score = 52 (23.4 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
Identities = 16/76 (21%), Positives = 39/76 (51%)
Query: 771 DNIYVKYTAEFINH-CKEKSIEGNLEVPKTWTATSNVVRFKNLADNDNNSGSDLSGAAFD 829
+N Y +++ I+ EKSI +L + + +N+ N +N+NN+ ++ + +
Sbjct: 1867 NNCYFPISSKSIDKGVLEKSIIPSLNFDGSNNSNNNINNNINNNNNNNNNNNNNNNNNIN 1926
Query: 830 SRNYAENSNVSESLSL 845
+ + N+N S + ++
Sbjct: 1927 NNSNNSNNNYSNNYNI 1942
Score = 40 (19.1 bits), Expect = 4.4e-44, Sum P(3) = 4.4e-44
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 804 SNVVRFKNLADNDNNSGSDLSGAAFDSRNYAENSN 838
+N N ++N NN+ S+ DS N + N+N
Sbjct: 1920 NNNNNINNNSNNSNNNYSNNYNINIDSNN-SNNNN 1953
>DICTYBASE|DDB_G0268660 [details] [associations]
symbol:DDB_G0268660 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268660
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 InterPro:IPR002058
ProtClustDB:CLSZ2429765 RefSeq:XP_646847.2
ProteinModelPortal:Q55F23 EnsemblProtists:DDB0304625 GeneID:8616530
KEGG:ddi:DDB_G0268660 InParanoid:Q55F23 Uniprot:Q55F23
Length = 2314
Score = 442 (160.7 bits), Expect = 4.4e-45, Sum P(2) = 4.4e-45
Identities = 107/294 (36%), Positives = 168/294 (57%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDEC 400
++ A++ ST S+S + N +++DE+ Q E S IPL + I+ +L GD
Sbjct: 1507 IRNANIVFSTLSASGSGSVRSNFKANIVLVDESTQSSEPASLIPLCIGNIEKLILVGDPL 1566
Query: 401 QLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDS 460
QLP + S S E SLFERLS + +L+ QYRMHP+IS FP++ FY++++ D
Sbjct: 1567 QLPPTIFSSGSAENGLNISLFERLSKV-LPVEMLNTQYRMHPTISRFPSNQFYKDRLLDG 1625
Query: 461 STVRKRSYEKRFLHGPM-YGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWI 519
V+ Y + H + YGP F +V +EE + S +N +E+++V ++ L + +
Sbjct: 1626 DNVKSLVYNQHNFHSDIKYGPIRFYDVIDSKEESGKRSLKNKLEITMVFTLIKKLVQDYP 1685
Query: 520 DSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRS 579
+ K K S GI++PY Q I+E+ K N ++ +IDG QG E+D+II+S VRS
Sbjct: 1686 ECK-KFSFGIITPYKLQKSEIKEQ--HKQFNYP-LNIETSTIDGVQGSEKDIIILSCVRS 1741
Query: 580 NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEAL---VHDANA 630
IGFLS+ +R+NVALTRA+ L+++GN++ L +K W VH N+
Sbjct: 1742 ER---IGFLSDRRRINVALTRAKFGLFVIGNSKLL-KKDRTWGPFCQYVHSINS 1791
Score = 130 (50.8 bits), Expect = 4.4e-45, Sum P(2) = 4.4e-45
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTP 85
LN SQ A+ + L K I LI GPPGTGKT T+ LL ILL + KF+ LVC P
Sbjct: 1395 LNASQFNAIETSLS------KKGITLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCGP 1448
Query: 86 TNVAIKELAARVVK 99
++ ++ E+A R +K
Sbjct: 1449 SHASVDEVAKRCLK 1462
Score = 40 (19.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 321 LNLPSAVEKDLLEDLL-KSFCLKRASLFLSTASSSYML 357
+ + V+++ +++ K+F +K + FL + S ++ L
Sbjct: 724 IEFSNLVQRNYIKEYFDKNFTVKNSPTFLDSRSEAFNL 761
>TAIR|locus:2130384 [details] [associations]
symbol:MAA3 "MAGATAMA 3" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009875 "pollen-pistil interaction" evidence=IMP]
[GO:0010183 "pollen tube guidance" evidence=IMP] PROSITE:PS51198
GO:GO:0005524 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0004386 GO:GO:0009553 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:Z97339 GO:GO:0010183 EMBL:AL161542 EMBL:EU915246
IPI:IPI00522212 PIR:E71420 RefSeq:NP_193292.3 UniGene:At.33168
ProteinModelPortal:B6SFA4 SMR:B6SFA4 PaxDb:B6SFA4 PRIDE:B6SFA4
EnsemblPlants:AT4G15570.1 GeneID:827233 KEGG:ath:AT4G15570
GeneFarm:2417 TAIR:At4g15570 HOGENOM:HOG000030627 KO:K10706
OMA:TIMREFT PhylomeDB:B6SFA4 ProtClustDB:CLSN2680970
Genevestigator:B6SFA4 GO:GO:0009875 InterPro:IPR026852
PANTHER:PTHR10887:SF27 Uniprot:B6SFA4
Length = 818
Score = 463 (168.0 bits), Expect = 5.1e-45, Sum P(3) = 5.1e-45
Identities = 115/335 (34%), Positives = 180/335 (53%)
Query: 308 HFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTAS-SSYMLHSVAMEPLN 366
H V +K S+ ++ D+ D +++ L+ A++ +T S S L + + +
Sbjct: 429 HLVAQKRGSAIDKPK-QGTTGTDI--DSIRTAILEEAAIVFATLSFSGSALLAKSNRGFD 485
Query: 367 FLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSY 426
++IDEAAQ E + IPL + K L GD QLPA V S V+ ++ +G S+FERL
Sbjct: 486 VVIIDEAAQAVEPATLIPLA-TRCKQVFLVGDPKQLPATVISTVAQDSGYGTSMFERLQK 544
Query: 427 LGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG-PMYGPYSFIN 485
GY +L QYRMHP I FP+ FYE + D S + ++ R H +GP+ F +
Sbjct: 545 AGYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQT--TRDWHKYRCFGPFCFFD 602
Query: 486 VFGGREEFIEH-----SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAI 540
+ G+E +H S N+ EV V+ I L + + K + I+SPY+ QV
Sbjct: 603 IHEGKES--QHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTF 660
Query: 541 QEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTR 600
+++ + A V + ++DGFQG E+D+ I S VR+N G IGFLSNS+R+NV +TR
Sbjct: 661 KDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITR 720
Query: 601 ARHCLWILGNARTLTRKKSVWEALVHDANARQCFF 635
A+ + ++G+A TL + +W+ L+ A R F
Sbjct: 721 AKSSVLVVGSAATL-KSDPLWKNLIESAEQRNRLF 754
Score = 73 (30.8 bits), Expect = 5.1e-45, Sum P(3) = 5.1e-45
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 14 GVWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLL 70
G NE F + LN SQ +A+ + K+ + LI GPPGTGKT+T+ +L
Sbjct: 248 GPLNEFF----NENLNKSQKEAI-----DVGLSRKSFV-LIQGPPGTGKTQTILSIL 294
Score = 59 (25.8 bits), Expect = 5.1e-45, Sum P(3) = 5.1e-45
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 77 KFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKVDSGVE 136
+ R LVC P+N A+ E+ V++L+ + RD + P I+ +G LK V
Sbjct: 374 RLRVLVCAPSNSALDEI---VLRLLSSGL-RDENAQTYTP--KIVRIG----LKAHHSVA 423
Query: 137 EIYLDYRV 144
+ LD+ V
Sbjct: 424 SVSLDHLV 431
>DICTYBASE|DDB_G0289529 [details] [associations]
symbol:DDB_G0289529 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002934
InterPro:IPR003593 Pfam:PF01909 SMART:SM00382
dictyBase:DDB_G0289529 GO:GO:0005524 EMBL:AAFI02000141
GO:GO:0017111 eggNOG:COG1112 GO:GO:0016779 RefSeq:XP_636183.1
ProteinModelPortal:Q54HF4 EnsemblProtists:DDB0219440 GeneID:8627170
KEGG:ddi:DDB_G0289529 InParanoid:Q54HF4 ProtClustDB:CLSZ2429765
Uniprot:Q54HF4
Length = 1677
Score = 422 (153.6 bits), Expect = 3.0e-44, Sum P(2) = 3.0e-44
Identities = 108/290 (37%), Positives = 158/290 (54%)
Query: 341 LKRASLFLST-ASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDE 399
+K AS+ ST A S P + ++IDE+ Q E S IPL L +K +L GD
Sbjct: 1304 IKSASIVFSTLAGSGSKAIFENFSP-DIVLIDESTQSSEPTSIIPLSLGSVKKLILVGDP 1362
Query: 400 CQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRD 459
QLP + SK + SLFERL+ L+ QYRMHP S F + FY ++D
Sbjct: 1363 VQLPPTIFSKQGADCGLKISLFERLAK-SIDVQFLNTQYRMHPVTSKFISEEFYNGTLKD 1421
Query: 460 SSTVRKRSYEK-RFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAW 518
V SY +F P +GP F ++ ++ I+ S N E+ V ++ L + +
Sbjct: 1422 GENVSIDSYNNCKFHFDPSFGPMKFFDLPKSNQKVIKKSIMNQDEIDKVFTLIKELIEKY 1481
Query: 519 IDSKEKLSIGIVSPYSAQVVAIQEKLG-SKYVNSAGFAVKVMSIDGFQGGEEDLIIISTV 577
+ K KLS GI++PY Q+ I+E+L S++ N + V +IDG QG E+D+II+S V
Sbjct: 1482 PECK-KLSFGIITPYKLQMNQIKEQLNRSEHHN---LNISVSTIDGVQGSEKDIIIMSCV 1537
Query: 578 RSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEA-LVH 626
RS IGFLS+ +R+NVALTRA+ L+++G + L K + WE L+H
Sbjct: 1538 RSIEKFGIGFLSDRRRINVALTRAKLGLYVIGTYKVLA-KDNTWEKFLIH 1586
Score = 139 (54.0 bits), Expect = 3.0e-44, Sum P(2) = 3.0e-44
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 20 FGPSLSST----LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ 75
F P+L + LN+SQ A+ S L + + I LI GPPGTGKT T++ LL +LL
Sbjct: 1181 FPPTLETICKEKLNESQLNAIKSSLVE------SGITLIQGPPGTGKTTTINYLLSVLLA 1234
Query: 76 M--KFRTLVCTPTNVAIKELAARVVK 99
+ KF+ LVC P++ ++ E+A R +K
Sbjct: 1235 IDKKFKILVCGPSHASVDEVAKRCLK 1260
Score = 41 (19.5 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 167 FLDNCVSLYHTYIDNESMKQSE-DIN 191
F D+ + LY +++ S++ S+ D+N
Sbjct: 375 FKDSSIQLYGSFLTGLSLEGSDLDVN 400
Score = 37 (18.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 104 SVERDCRDALFFPLGDILLLGNNERLKVDSGVEEIYLDYRVKRL 147
++ +++ F + + + + N+ RLK + E++ D + +L
Sbjct: 633 NIASSIQNSFFRIIVEFIHMENSIRLKKFKDINELFKDISLPKL 676
>DICTYBASE|DDB_G0268662 [details] [associations]
symbol:DDB_G0268662 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268662
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR002058 ProtClustDB:CLSZ2429765
RefSeq:XP_646848.1 ProteinModelPortal:Q55F22
EnsemblProtists:DDB0304624 GeneID:8616531 KEGG:ddi:DDB_G0268662
InParanoid:Q55F22 Uniprot:Q55F22
Length = 2523
Score = 438 (159.2 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 105/294 (35%), Positives = 168/294 (57%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDEC 400
++ A++ +T S+S + N +++DE+ Q E S IPL + I+ +L GD
Sbjct: 1706 IRNATIIFATLSASGSKPIRSNFKANIVLVDESTQSSEPASLIPLCIGNIEKLILVGDPL 1765
Query: 401 QLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDS 460
QLP + S S + SLFERLS + +L+ QYRMHP+IS FP++ FY++++ D
Sbjct: 1766 QLPPTIFSSESAKNGLNISLFERLSKV-LPVEMLNTQYRMHPTISRFPSNQFYKDRLLDG 1824
Query: 461 STVRKRSYEKRFLHGPM-YGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWI 519
V+ Y + H + YGP F +V +EE + S +N +E+++V ++ L + +
Sbjct: 1825 DNVKSLVYNQHNFHSDIKYGPIRFYDVIDSKEESGKRSLKNKLEITMVFTLIKKLVQDYP 1884
Query: 520 DSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRS 579
+ K K S GI++PY Q I+E+ K N ++ +IDG QG E+D+II+S VRS
Sbjct: 1885 ECK-KFSFGIITPYKLQKSEIKEQ--HKQFNYP-LNIETSTIDGVQGSEKDIIILSCVRS 1940
Query: 580 NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEAL---VHDANA 630
IGFLS+ +R+NVALTRA+ L+++GN++ L +K W VH N+
Sbjct: 1941 ER---IGFLSDRRRINVALTRAKFGLFVIGNSKLL-KKDRTWGPFCQYVHSINS 1990
Score = 127 (49.8 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 35/74 (47%), Positives = 45/74 (60%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTP 85
LN SQ AV + L K I LI GPPGTGKT T+ LL ILL + KF+ LVC P
Sbjct: 1594 LNTSQFSAVETSLST-----KG-ITLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCGP 1647
Query: 86 TNVAIKELAARVVK 99
++ ++ E+A R +K
Sbjct: 1648 SHASVDEVAKRCLK 1661
>ZFIN|ZDB-GENE-070402-1 [details] [associations]
symbol:setx "senataxin" species:7955 "Danio rerio"
[GO:0006302 "double-strand break repair" evidence=IEA]
InterPro:IPR026121 ZFIN:ZDB-GENE-070402-1 GO:GO:0006302
InterPro:IPR024481 Pfam:PF12726 GeneTree:ENSGT00580000081652
PANTHER:PTHR10887:SF15 EMBL:CU927918 IPI:IPI00481119
Ensembl:ENSDART00000082314 Ensembl:ENSDART00000149777
Uniprot:E7FBJ2
Length = 2368
Score = 438 (159.2 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 119/301 (39%), Positives = 175/301 (58%)
Query: 348 LSTASSSYMLHS---VAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPA 404
LST+ S + ++ + EP + ++IDEA+Q KE+E+ IP+ L +L GD QLP
Sbjct: 1935 LSTSGSIVLENAFRRLGHEPFSCVIIDEASQAKETETLIPM-LYRCPSVILVGDPNQLPP 1993
Query: 405 MVESKVSNEACFGRSLFERLS---YLGYSKH----LLSIQYRMHPSISCFPNSYFYENKI 457
V S+ + E F +SL RL + SK LLS+QYRMHP I FP+ Y Y + +
Sbjct: 1994 TVVSQKAKEFGFDQSLMARLCKSLHPSNSKLPPILLLSMQYRMHPDICEFPSKYIYNSAL 2053
Query: 458 R-DSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYK 516
+ D T +KR L P + PY +V GRE S N EVS+V +LL L
Sbjct: 2054 KNDCETAQKRCS----LSWP-FKPYKVFDVMDGRETKERDSFINHKEVSLV-GLLLKL-- 2105
Query: 517 AWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIIST 576
+ ++ + +G+++PY+AQ I + + + +N V+V ++DGFQG E D II+S
Sbjct: 2106 --LCKEQAVRVGVITPYNAQKHRILDAIKTSGINKQ-LQVEVDTVDGFQGREMDCIIVSC 2162
Query: 577 VR-SNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFF 635
VR S+ GSIGF+ N +R+NV +TRA+ L+ILG+ RTL R++S W AL+ DA R+C
Sbjct: 2163 VRASSEMGSIGFVGNRQRMNVTITRAKFSLFILGHLRTL-REQSDWGALIEDAGRRECII 2221
Query: 636 N 636
N
Sbjct: 2222 N 2222
Score = 116 (45.9 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 49/151 (32%), Positives = 70/151 (46%)
Query: 21 GPS-LSST-LNDSQAQAVLSCLRQMRCDHKAT-IQLIWGPPGTGKTKTVSMLLVILLQM- 76
GPS L + N QA+A+ + + K LI GPPGTGK+KT+ LL LL
Sbjct: 1706 GPSDLDAPEFNRDQARAIACGIAMIHRKQKTPKFLLIHGPPGTGKSKTIGGLLYKLLSSA 1765
Query: 77 ---------------KFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFP---LG 118
+ R L+C P+N AI L +V+ + KE CR+ + P G
Sbjct: 1766 TNSSATVGNLHSKSRRTRVLLCAPSNAAIDSLMKKVILIFKEK----CRN-INAPQGNCG 1820
Query: 119 DILLLG-NNERLKVDSGVEEIYLDYRVKRLA 148
DI L+ NER + ++ LD++ K A
Sbjct: 1821 DINLVRLGNERT-ISKSLKPFSLDHQTKARA 1850
>TAIR|locus:2126480 [details] [associations]
symbol:AT4G30100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] GO:GO:0009506 EMBL:CP002687 EMBL:AL161576
GO:GO:0004519 eggNOG:COG1112 EMBL:AL078464 KO:K10706
InterPro:IPR026852 PANTHER:PTHR10887:SF27 HOGENOM:HOG000084788
ProtClustDB:CLSN2683158 IPI:IPI00535923 PIR:T08986
RefSeq:NP_194739.1 UniGene:At.31859 ProteinModelPortal:Q9SZW3
SMR:Q9SZW3 STRING:Q9SZW3 PaxDb:Q9SZW3 PRIDE:Q9SZW3
EnsemblPlants:AT4G30100.1 GeneID:829133 KEGG:ath:AT4G30100
TAIR:At4g30100 InParanoid:Q9SZW3 PhylomeDB:Q9SZW3
ArrayExpress:Q9SZW3 Genevestigator:Q9SZW3 Uniprot:Q9SZW3
Length = 1311
Score = 472 (171.2 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 112/309 (36%), Positives = 170/309 (55%)
Query: 338 SFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFG 397
SF + +F + +SS L S + +VIDEAAQ E PL L G VL G
Sbjct: 911 SFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLAL-GAARCVLVG 969
Query: 398 DECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKI 457
D QLPA V SK + + RSLFER G LL++QYRMHP I FP+ YFY+ ++
Sbjct: 970 DPQQLPATVISKAAGTLLYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGRL 1029
Query: 458 RDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSC--RNMVEVSVVMKILLNLY 515
DS +V + ++ + + PY F ++ GRE S N+ E + + L+L
Sbjct: 1030 TDSESV-STAPDEIYYKDSVLKPYLFFDISHGRESHRGGSVSYENIDEARFCVGVYLHLQ 1088
Query: 516 KAWID-SKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIII 574
+ K+S+G+++PY Q+ ++ + G+ + + ++D FQG E D+II+
Sbjct: 1089 RTLKSLGGGKVSVGVITPYKLQLKCLKIEFGNALSQDELQEIYINTVDAFQGQERDVIIM 1148
Query: 575 STVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCF 634
S VR++N G +GF+++ +R+NVALTRA+ LW++GNA L + + W AL+ DA AR CF
Sbjct: 1149 SCVRASNHG-VGFVADIRRMNVALTRAKRALWVMGNASALMKCED-WAALITDAKARNCF 1206
Query: 635 FNADD-DKD 642
+ KD
Sbjct: 1207 MEMESLPKD 1215
Score = 73 (30.8 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 53 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKES 104
L+ GPPGTGKT TV +L ++ ++++ T++ +K+LA K V ES
Sbjct: 663 LVQGPPGTGKTHTVWGMLNVIHLVQYQQYY---TSL-LKKLAPESYKQVNES 710
Score = 57 (25.1 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 77 KFRTLVCTPTNVAIKELAARVV 98
K R LVC P+N A EL +RV+
Sbjct: 741 KPRMLVCAPSNAATDELLSRVL 762
>DICTYBASE|DDB_G0268914 [details] [associations]
symbol:DDB_G0268914 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
SMART:SM00382 dictyBase:DDB_G0268914 GO:GO:0005524
EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112 RefSeq:XP_647058.1
ProteinModelPortal:Q55EG2 EnsemblProtists:DDB0190122 GeneID:8616757
KEGG:ddi:DDB_G0268914 InParanoid:Q55EG2 OMA:ANCRVEN Uniprot:Q55EG2
Length = 4540
Score = 444 (161.4 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 116/314 (36%), Positives = 185/314 (58%)
Query: 337 KSFCLKRASLFLST--ASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSG--IKH 392
K L+ +S+ ST AS S ++ S + +P N +++DEA Q E+ IPL L +K
Sbjct: 3665 KKMILEHSSICFSTLSASGSNLVQS-SFKP-NVVIVDEATQSCETSCIIPLSLGAKSMKK 3722
Query: 393 AVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYF 452
+L GD QLP + SK S G SLFERLS + +L++QYRMHP IS FP+S F
Sbjct: 3723 LILVGDPVQLPPTIFSKESIHCGLGISLFERLSKV-LPVSMLNVQYRMHPLISKFPSSQF 3781
Query: 453 YENKIRDS-STVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKIL 511
Y + ++D + V +Y RF YG F +V REE + S +N +E+++V ++
Sbjct: 3782 YHDILKDGDNVVSSDAYSLRFHENQDYGAIRFFDVTDSREERGKTSIKNQLEITMVFTLI 3841
Query: 512 LNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDL 571
L + ++K+ S GIV+PY Q I++ K +N + +++ +ID FQG E+D+
Sbjct: 3842 KKLTQDHPETKQ-YSFGIVTPYKLQRKEIEDAY--KQLNLS-LNIEIKTIDSFQGSEKDI 3897
Query: 572 IIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALV-HDANA 630
+I+S VR+ SIGFLS+ +R+NV++TRA++ L+I+GNA TL + W L+ H +
Sbjct: 3898 MIMSCVRNE---SIGFLSDRRRINVSITRAKYGLFIIGNA-TLLKLDRTWGELIDHLISI 3953
Query: 631 RQCF-FNADDDKDL 643
+ + N++D ++L
Sbjct: 3954 DRVYSINSNDIENL 3967
Score = 137 (53.3 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK--FRTLV 82
+ TLN+SQ A+ L H ++I LI GPPGTGKT T++ L+ I+L + F+ LV
Sbjct: 3553 NQTLNESQLAAINESLV-----H-SSITLIQGPPGTGKTHTITSLISIILAINPDFKILV 3606
Query: 83 CTPTNVAIKELAARVV 98
C P++ A+ E+A RV+
Sbjct: 3607 CGPSHAAVDEVAKRVI 3622
Score = 55 (24.4 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 164 MVDFLDNCVSLYHTYIDNESMKQSED-IN 191
M+D +D+C+ LY Y+ S+K +D IN
Sbjct: 2019 MIDSIDSCIGLYPNYLP--SLKYLKDFIN 2045
Score = 43 (20.2 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 740 IDIVKESQYFQ-VLKVWDILPLEDVPKVVARLDNIYVKYTAEFIN 783
IDI S+ Q VL +IL +D PK++ + + FI+
Sbjct: 4114 IDINLISENIQKVLNNQEILTNQDYPKILLEIIQELQSFNKSFIS 4158
Score = 37 (18.1 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 19 TFGPSLSSTLNDS 31
T PS+SSTL+ S
Sbjct: 2478 TNSPSISSTLSSS 2490
>ASPGD|ASPL0000056713 [details] [associations]
symbol:AN0646 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001308 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
HOGENOM:HOG000205990 OMA:MFYEGSL ProteinModelPortal:C8VS08
EnsemblFungi:CADANIAT00002030 Uniprot:C8VS08
Length = 1077
Score = 405 (147.6 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 120/344 (34%), Positives = 181/344 (52%)
Query: 300 LHK--RRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSF---CLKRASLFLSTASSS 354
LH+ R ++ + L KL +EL S+ ++ L+ L ++ L A + T +
Sbjct: 514 LHEQVRLNDSNIELIKLNQLKSELGELSSQDEKRLKQLTRAAEREILNNADVICCTCVGA 573
Query: 355 YMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSN 412
+ L F ++IDE+ Q E E IPL L G K VL GD QL ++ +K +
Sbjct: 574 ---GDPRLAKLKFRTVLIDESTQSAEPECMIPLVL-GCKQVVLVGDHQQLGPVIMNKKAA 629
Query: 413 EACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
+A +SLFERL LG S L++QYRMHP +S FP++ FYE +++ T R +
Sbjct: 630 KAGLNQSLFERLVILGCSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGITSFDRLRREVD 689
Query: 473 LHGPMY-GPYSFINVFGGREEFIEH-SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIV 530
P+ P F + G E S N E + V KI+ +KA + K+ IGI+
Sbjct: 690 FPWPILDSPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVQPKD---IGII 746
Query: 531 SPYSAQ---VVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGF 587
+PY Q +V+ + G+ + ++V S+D FQG E+D II+S VRSN+ IGF
Sbjct: 747 TPYEGQRSYIVSSMQATGT-FKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGF 805
Query: 588 LSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANAR 631
LS+ +R+NVALTRA++ L ILGN + L+ K +W L+ R
Sbjct: 806 LSDPRRLNVALTRAKYGLVILGNPKVLS-KHPLWNCLLQHFKER 848
Score = 133 (51.9 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 46/131 (35%), Positives = 66/131 (50%)
Query: 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF-RT 80
P L LN SQ AV S L++ + LI GPPGTGKT T + ++ L ++ +
Sbjct: 419 PGLPE-LNGSQINAVKSVLQR-------PLSLIQGPPGTGKTVTSATIIYHLAKLNGGQV 470
Query: 81 LVCTPTNVAIKELAARVVK--LVKESVERDCRDALFFPLGDILLLGNNERLKVDSGVEEI 138
LVC P+NVA+ +L R+ + L V R+ + P+G L L RL DS +E I
Sbjct: 471 LVCAPSNVAVDQLCERIHRTGLKTVRVTAKSREDVESPVG-FLSLHEQVRLN-DSNIELI 528
Query: 139 YLDYRVKRLAD 149
L+ L +
Sbjct: 529 KLNQLKSELGE 539
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 862 DRVGRELDLPFEVTDEQLEMILSPRSTFILGRSGT 896
DR+ RE+D P+ + D + M S + SGT
Sbjct: 682 DRLRREVDFPWPILDSPM-MFWSNLGNEEISASGT 715
>CGD|CAL0003335 [details] [associations]
symbol:SEN1 species:5476 "Candida albicans" [GO:0035649 "Nrd1
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] [GO:0031126 "snoRNA
3'-end processing" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR014016 InterPro:IPR024714 PROSITE:PS51198
CGD:CAL0003335 GO:GO:0005524 GO:GO:0005634 GO:GO:0008033
GO:GO:0004386 eggNOG:COG1112 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_723003.1 RefSeq:XP_723150.1 ProteinModelPortal:Q5ANG6
STRING:Q5ANG6 GeneID:3635255 GeneID:3635333 KEGG:cal:CaO19.13359
KEGG:cal:CaO19.5938 Uniprot:Q5ANG6
Length = 2018
Score = 451 (163.8 bits), Expect = 1.6e-41, Sum P(4) = 1.6e-41
Identities = 135/418 (32%), Positives = 213/418 (50%)
Query: 300 LHKRRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHS 359
++K+RSE + +KL + ++ + K++ +++ L A + ST S S H
Sbjct: 1473 INKKRSE---LAKKLDEQREKASIANRT-KEINRRNIQARILSEAQVLCSTLSGS--AHD 1526
Query: 360 -VAMEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACF 416
VA + F ++IDEA Q E + IPL+ G K ++ GD QLP V S+ + +
Sbjct: 1527 LVANLSVQFDQVIIDEACQCLELSAIIPLRY-GCKKCIMVGDPNQLPPTVLSQAAASYNY 1585
Query: 417 GRSLFERLSYLGY-SKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG 475
+SLF R+ S ++L +QYRMHP IS FP+S FY +K++D + + + + +
Sbjct: 1586 EQSLFVRMQKNHPDSVYMLDVQYRMHPMISKFPSSEFYNSKLKDGDGMLELN-TRPWHKD 1644
Query: 476 PMYGPYSFINVFGGREEF-IEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYS 534
P PY F ++ G E+ + S N E V +++ L + K IGI+SPY
Sbjct: 1645 PPLTPYRFFDILGKHEKNELTRSLFNTDEAIVALQLTDKLMQLLPQDKFSGKIGIISPYK 1704
Query: 535 AQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRV 594
Q+ I+E KY + ++DGFQG E+++II+S VR++ G++GFLS+ +R+
Sbjct: 1705 EQIRKIKEVFVRKYGKPILDEIDFNTVDGFQGQEKEIIIMSCVRASATGNVGFLSDVRRM 1764
Query: 595 NVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDD-KDLGKAILAVKKX 653
NVALTRA+ LWILGN +L+R + VW+ L+ DA R C A + +K+
Sbjct: 1765 NVALTRAKTTLWILGNKDSLSRNE-VWKKLLTDAGERNCITQAYPGFLNPSNPNSGLKRK 1823
Query: 654 XXXXXXXXNPESRLFRSQRWKVNFSENFLKSFR----KLTSDPTKKSVIHLLLKLSNG 707
P+ F ++ N SE + R K T PT V+ K SNG
Sbjct: 1824 EENVFT---PQQTKFAKKQKVSNESERNVHKIRNNLTKPTYRPTNAGVLPSKSKSSNG 1878
Score = 81 (33.6 bits), Expect = 1.6e-41, Sum P(4) = 1.6e-41
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV 66
+NDSQA+A++ + LI GPPGTGKTKT+
Sbjct: 1297 VNDSQARAIMGTFKS------EGFSLIQGPPGTGKTKTI 1329
Score = 60 (26.2 bits), Expect = 1.6e-41, Sum P(4) = 1.6e-41
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 77 KFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKVDSGVE 136
K + L+C P+N A+ EL R+ ++ V + + PL ++ LG ++ ++S V
Sbjct: 1360 KAKILICAPSNAAVDELVLRL----RDGVRNSSGEHM--PL-KVVRLGRSDA--INSSVR 1410
Query: 137 EIYLDYRVKR 146
++ L+ V +
Sbjct: 1411 DLTLEELVDK 1420
Score = 41 (19.5 bits), Expect = 1.6e-41, Sum P(4) = 1.6e-41
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 790 IEGNLEVPKTWTATSNVVRFKNLADNDNN----SGSDLSGAAFDSRNYAENSNVSE 841
I NL P + V+ K+ + N NN S ++L +A S N SN ++
Sbjct: 1852 IRNNLTKPTYRPTNAGVLPSKSKSSNGNNKPDYSANNLQSSAKQS-NKDTKSNTTD 1906
>UNIPROTKB|G4ND47 [details] [associations]
symbol:MGG_00976 "Regulator-nonsense transcripts 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 EMBL:CM001235 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
KO:K14326 RefSeq:XP_003717973.1 ProteinModelPortal:G4ND47
SMR:G4ND47 EnsemblFungi:MGG_00976T0 GeneID:2674784
KEGG:mgr:MGG_00976 Uniprot:G4ND47
Length = 1105
Score = 413 (150.4 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
Identities = 119/349 (34%), Positives = 186/349 (53%)
Query: 296 IKYL-LHK--RRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSF---CLKRASLFLS 349
+ +L LH+ R ++ + L KLQ +EL S+ ++ + L K+ L A +
Sbjct: 537 VSFLALHEQVRMNDTNPELAKLQQLKSELGELSSQDEKKFKQLTKAAEREILSNADVVCC 596
Query: 350 TASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESK 409
T + ++ N L IDE+ Q E E IPL L G K VL GD QL ++ +K
Sbjct: 597 TCVGAGDPRLAKLKFRNVL-IDESTQSAEPECMIPLVL-GCKQVVLVGDHKQLGPVIMNK 654
Query: 410 VSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYE 469
+ +A +SLFERL LG + L++QYRMHP +S FP++ FYE +++ T+++R
Sbjct: 655 KAAKAGLNQSLFERLVKLGLTPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTIQQRLRR 714
Query: 470 KRFLHGPMYG-PYSFINVFGGREEFIEH-SCRNMVEVSVVMKILLNLYKAWIDSKEKLSI 527
P+ P F + G E S N E S V K++ +KA + + I
Sbjct: 715 DVDFPWPVADMPMMFWSNLGNEEISASGTSYLNRTEASNVEKLVTRFFKAGVKPGD---I 771
Query: 528 GIVSPYSAQ---VVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGS 584
G+V+PY Q +V+ + G+ + + V+V S+D FQG E+D I++S VRSN
Sbjct: 772 GVVTPYEGQRSYIVSTMQNTGT-FKKESYKEVEVASVDAFQGREKDFIVLSCVRSNESQG 830
Query: 585 IGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQC 633
IGFLS+ +R+NVALTRA++ + I+GN + L+ K +W L+ R+C
Sbjct: 831 IGFLSDPRRLNVALTRAKYGVVIIGNPKVLS-KHELWHHLLIHFRDRKC 878
Score = 115 (45.5 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
Identities = 31/77 (40%), Positives = 42/77 (54%)
Query: 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK-FRT 80
P L LN SQ A+ + L + LI GPPGTGKT T + ++ L +M +
Sbjct: 447 PGLPD-LNGSQISAIKAVL-------STPLSLIQGPPGTGKTVTSATIIYHLAKMNGSQV 498
Query: 81 LVCTPTNVAIKELAARV 97
LVC P+NVA+ +L RV
Sbjct: 499 LVCAPSNVAVDQLCERV 515
>CGD|CAL0003666 [details] [associations]
symbol:NAM7 species:5476 "Candida albicans" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
CGD:CAL0003666 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 eggNOG:COG1112
InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000063
EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1 RefSeq:XP_716838.1
ProteinModelPortal:Q5A507 SMR:Q5A507 STRING:Q5A507 GeneID:3641489
GeneID:3641540 KEGG:cal:CaO19.8554 KEGG:cal:CaO19.939
Uniprot:Q5A507
Length = 1019
Score = 407 (148.3 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 104/280 (37%), Positives = 158/280 (56%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E IP+ + G K +L GD QL ++ K + +A +SLFERL +L
Sbjct: 602 VLIDESTQASEPEVLIPI-VKGAKQVILVGDHQQLGPVILDKKAADAGLKQSLFERLVFL 660
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYG-PYSFINV 486
G+ L +QYRMHP +S FP++ FYE +++ T R E+ P+ P F
Sbjct: 661 GHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEESTFPWPVIDTPMMFWAN 720
Query: 487 FGGREEFIE--HSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQE-- 542
+G REE +S N VE V KI+ L+K I ++ IG+++PY Q + +
Sbjct: 721 YG-REELSASGNSYLNRVEAMNVEKIITKLFKDGIKPEQ---IGVITPYEGQRAYLVQFM 776
Query: 543 KLGSKYVNSAG--FAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTR 600
+ S ++ V++ S+D FQG E+D II+S VR+N+ SIGFLS+ +R+NVALTR
Sbjct: 777 SVNSTLLDKRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTR 836
Query: 601 ARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDD 640
A++ L ILGN R+L R + +W L+ + C + D
Sbjct: 837 AKYGLVILGNPRSLCRNR-LWNHLLIHFREKGCLVDGPLD 875
Score = 120 (47.3 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRT 80
P L+ LN SQ AV + L++ + LI GPPGTGKT T + ++ L ++ K +
Sbjct: 436 PKLTE-LNVSQTNAVRTVLQR-------PLSLIQGPPGTGKTVTSATIIYHLSKLNKQKI 487
Query: 81 LVCTPTNVAIKELAARV 97
LVC P+NVA+ LAA++
Sbjct: 488 LVCAPSNVAVDHLAAKL 504
Score = 43 (20.2 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 1024 DGTLGSSYFDRFHDIRKHYG 1043
D +L ++++++ + I K+YG
Sbjct: 972 DNSLSANFYNKLNKIDKNYG 991
>UNIPROTKB|Q5A507 [details] [associations]
symbol:NAM7 "Putative uncharacterized protein NAM7"
species:237561 "Candida albicans SC5314" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 CGD:CAL0003666 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
EMBL:AACQ01000063 EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1
RefSeq:XP_716838.1 ProteinModelPortal:Q5A507 SMR:Q5A507
STRING:Q5A507 GeneID:3641489 GeneID:3641540 KEGG:cal:CaO19.8554
KEGG:cal:CaO19.939 Uniprot:Q5A507
Length = 1019
Score = 407 (148.3 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 104/280 (37%), Positives = 158/280 (56%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E IP+ + G K +L GD QL ++ K + +A +SLFERL +L
Sbjct: 602 VLIDESTQASEPEVLIPI-VKGAKQVILVGDHQQLGPVILDKKAADAGLKQSLFERLVFL 660
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYG-PYSFINV 486
G+ L +QYRMHP +S FP++ FYE +++ T R E+ P+ P F
Sbjct: 661 GHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEESTFPWPVIDTPMMFWAN 720
Query: 487 FGGREEFIE--HSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQE-- 542
+G REE +S N VE V KI+ L+K I ++ IG+++PY Q + +
Sbjct: 721 YG-REELSASGNSYLNRVEAMNVEKIITKLFKDGIKPEQ---IGVITPYEGQRAYLVQFM 776
Query: 543 KLGSKYVNSAG--FAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTR 600
+ S ++ V++ S+D FQG E+D II+S VR+N+ SIGFLS+ +R+NVALTR
Sbjct: 777 SVNSTLLDKRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTR 836
Query: 601 ARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDD 640
A++ L ILGN R+L R + +W L+ + C + D
Sbjct: 837 AKYGLVILGNPRSLCRNR-LWNHLLIHFREKGCLVDGPLD 875
Score = 120 (47.3 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRT 80
P L+ LN SQ AV + L++ + LI GPPGTGKT T + ++ L ++ K +
Sbjct: 436 PKLTE-LNVSQTNAVRTVLQR-------PLSLIQGPPGTGKTVTSATIIYHLSKLNKQKI 487
Query: 81 LVCTPTNVAIKELAARV 97
LVC P+NVA+ LAA++
Sbjct: 488 LVCAPSNVAVDHLAAKL 504
Score = 43 (20.2 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 1024 DGTLGSSYFDRFHDIRKHYG 1043
D +L ++++++ + I K+YG
Sbjct: 972 DNSLSANFYNKLNKIDKNYG 991
>SGD|S000004422 [details] [associations]
symbol:SEN1 "Presumed helicase and subunit of the Nrd1
complex (Nrd1p-Nab3p-Sen1p)" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0043144
"snoRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA;IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IMP;IDA] [GO:0031126 "snoRNA
3'-end processing" evidence=IMP] [GO:0006378 "mRNA polyadenylation"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA;IMP] [GO:0016180 "snRNA processing"
evidence=IEA;IMP] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0035649 "Nrd1 complex" evidence=IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR024714 SGD:S000004422 GO:GO:0005524 GO:GO:0005634
GO:GO:0019904 GO:GO:0006378 EMBL:BK006945 GO:GO:0008033
eggNOG:COG1112 EMBL:U20939 EMBL:U21094 GO:GO:0006364 GO:GO:0006369
GO:GO:0031126 GO:GO:0043141 KO:K00088 RefSeq:NP_013536.3
GeneID:851152 KEGG:sce:YLR432W GO:GO:0016180 KO:K10706
RefSeq:NP_013534.3 GeneID:851150 KEGG:sce:YLR430W GO:GO:0035649
GO:GO:0032575 InterPro:IPR024481 PANTHER:PTHR10887:SF164
Pfam:PF12726 EMBL:M74589 PIR:S53416 ProteinModelPortal:Q00416
SMR:Q00416 DIP:DIP-881N IntAct:Q00416 MINT:MINT-427565
STRING:Q00416 PaxDb:Q00416 PeptideAtlas:Q00416 EnsemblFungi:YLR430W
CYGD:YLR430w GeneTree:ENSGT00580000081652 HOGENOM:HOG000246755
OMA:SAIIPLR OrthoDB:EOG4MPMZ6 NextBio:967924 Genevestigator:Q00416
GermOnline:YLR430W Uniprot:Q00416
Length = 2231
Score = 445 (161.7 bits), Expect = 7.8e-41, Sum P(3) = 7.8e-41
Identities = 115/330 (34%), Positives = 186/330 (56%)
Query: 315 QSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSV-AMEPLNF--LVID 371
+ E N + +DL ++ L + + ST S S H V A + F ++ID
Sbjct: 1533 RDEMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSGS--AHDVLATMGIKFDTVIID 1590
Query: 372 EAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSK 431
EA Q E S IPL+ G K ++ GD QLP V S ++ + +SLF R+ S
Sbjct: 1591 EACQCTELSSIIPLRYGG-KRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEK-NSSP 1648
Query: 432 HLLSIQYRMHPSISCFPNSYFYENKIRDS---STVRKRSYEKRFLHGPMYGPYSFINVFG 488
+LL +QYRMHPSIS FP+S FY+ +++D + KR + + L P+ PY F ++
Sbjct: 1649 YLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQ--LE-PL-APYKFFDIIS 1704
Query: 489 GREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLS--IGIVSPYSAQVVAIQEKL 544
GR+E S NM E+ V ++++ L++ + D+K + IGI+SPY Q+ ++++
Sbjct: 1705 GRQEQNAKTMSYTNMEEIRVAIELVDYLFRKF-DNKIDFTGKIGIISPYREQMQKMRKEF 1763
Query: 545 GSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNG-GSIGFLSNSKRVNVALTRARH 603
+ ++ +IDGFQG E+++I+IS VR+++ S+GFL + +R+NVALTRA+
Sbjct: 1764 ARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKT 1823
Query: 604 CLWILGNARTLTRKKSVWEALVHDANARQC 633
+W+LG+ R+L + K +W L+ DA R C
Sbjct: 1824 SIWVLGHQRSLAKSK-LWRDLIEDAKDRSC 1852
Score = 85 (35.0 bits), Expect = 7.8e-41, Sum P(3) = 7.8e-41
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK 77
S LN SQA+A+++ + K LI GPPGTGKTKT+ ++ L K
Sbjct: 1332 SYKLNTSQAEAIVNSVS------KEGFSLIQGPPGTGKTKTILGIIGYFLSTK 1378
Score = 52 (23.4 bits), Expect = 7.8e-41, Sum P(3) = 7.8e-41
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 74 LQMKFRTLVCTPTNVAIKELAARV 97
L K + L+C P+N A+ E+ R+
Sbjct: 1400 LLKKQKILICAPSNAAVDEICLRL 1423
Score = 46 (21.3 bits), Expect = 8.9e-37, Sum P(3) = 8.9e-37
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 19 TFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS 67
+ PSLSST+ S A++ L++ KA I G P + K S
Sbjct: 951 SLSPSLSSTIASSSAESRADYLQR-----KALSSSITGRPRVAQPKITS 994
Score = 42 (19.8 bits), Expect = 9.7e-36, Sum P(3) = 9.7e-36
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 186 QSEDINGDIIKEKECGKEADVSDVEIKPFLEFVRDRFKCIAAPLRSCIFNF 236
Q+ DING ++K + + A K LE +R R PL I +
Sbjct: 1080 QTVDINGKVVKRQTAAELA-------KQELEHMRKRLNVDMNPLYEIILQW 1123
>TAIR|locus:2171007 [details] [associations]
symbol:LBA1 "LOW-LEVEL BETA-AMYLASE 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=IGI]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA;RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0009755 "hormone-mediated
signaling pathway" evidence=RCA] [GO:0048825 "cotyledon
development" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0009744 "response to sucrose stimulus"
evidence=IGI] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005886 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016246 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0009744 GO:GO:0008270 GO:GO:0010182
GO:GO:0004386 GO:GO:0000932 eggNOG:COG1112 InterPro:IPR014001
PROSITE:PS51192 EMBL:AB013394 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL EMBL:AF484122 IPI:IPI00541997 RefSeq:NP_199512.2
UniGene:At.8584 ProteinModelPortal:Q9FJR0 SMR:Q9FJR0 STRING:Q9FJR0
PaxDb:Q9FJR0 PRIDE:Q9FJR0 EnsemblPlants:AT5G47010.1 GeneID:834747
KEGG:ath:AT5G47010 GeneFarm:2422 TAIR:At5g47010 InParanoid:Q9FJR0
PhylomeDB:Q9FJR0 ProtClustDB:CLSN2680462 Genevestigator:Q9FJR0
GermOnline:AT5G47010 Uniprot:Q9FJR0
Length = 1254
Score = 403 (146.9 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 120/354 (33%), Positives = 183/354 (51%)
Query: 296 IKYLLHKRRSECHFVLRKLQSSFNEL---------NLPSAVEKDLLE--DLLKSFCLKRA 344
+++L +SE H L++L+ EL NL A E+++ + D++ C+ A
Sbjct: 583 VRHLDTSEKSELH-KLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAA 641
Query: 345 SLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPA 404
L LS ++ V +IDE+ Q E E IPL L G+K VL GD CQL
Sbjct: 642 DLRLS----NFRFRQV--------LIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLGP 688
Query: 405 MVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVR 464
++ K + A +SLFERL LG L +QYRMHP++S FP++ FYE +++ T+
Sbjct: 689 VIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTII 748
Query: 465 KRSYEKRFLHGPMYGPYSFINVFGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSK 522
+R P+ F V G+EE S N E + V K++ K+ +
Sbjct: 749 ERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPS 808
Query: 523 EKLSIGIVSPYSAQ---VVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRS 579
+ IG+++PY Q +V + GS ++V S+D FQG E+D II+S VRS
Sbjct: 809 Q---IGVITPYEGQRAYIVNYMARNGSLR-QQLYKEIEVASVDSFQGREKDYIILSCVRS 864
Query: 580 NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQC 633
N IGFL++ +R+NVALTRAR+ + ILGN + L+ K+ +W L+ +C
Sbjct: 865 NEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS-KQPLWNGLLTHYKEHEC 917
Score = 119 (46.9 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 34/80 (42%), Positives = 47/80 (58%)
Query: 20 FG-PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMK 77
FG P L LN SQ AV S L++ I LI GPPGTGKT T + ++ + Q +
Sbjct: 481 FGVPGLPE-LNASQVNAVKSVLQK-------PISLIQGPPGTGKTVTSAAIVYHMAKQGQ 532
Query: 78 FRTLVCTPTNVAIKELAARV 97
+ LVC P+NVA+ +LA ++
Sbjct: 533 GQVLVCAPSNVAVDQLAEKI 552
Score = 99 (39.9 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 34/98 (34%), Positives = 49/98 (50%)
Query: 51 IQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPTNVAIKELAARVVKLVKESVERDC 109
I LI GPPGTGKT T + ++ + Q + + LVC P+NVA+ +LA ++ V R C
Sbjct: 505 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI-SATGLKVVRLC 563
Query: 110 RDALFFPLGDILLLGNNERLKVDSGVEEIYLDYRVKRL 147
+ R V S VE + L Y+V+ L
Sbjct: 564 AKS---------------REAVSSPVEYLTLHYQVRHL 586
>POMBASE|SPAC6G9.10c [details] [associations]
symbol:sen1 "ATP-dependent 5' to 3' DNA/RNA helicase
Sen1" species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=ISO] [GO:0006369
"termination of RNA polymerase II transcription" evidence=ISO]
[GO:0008033 "tRNA processing" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016180 "snRNA
processing" evidence=ISO] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0035649 "Nrd1 complex"
evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0043144 "snoRNA processing"
evidence=ISO] InterPro:IPR024714 PomBase:SPAC6G9.10c GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006397
GO:GO:0008033 eggNOG:COG1112 GO:GO:0006364 GO:GO:0006369
GO:GO:0043144 GO:GO:0043141 GO:GO:0016180 KO:K10706 GO:GO:0035649
PIR:T39072 RefSeq:NP_594119.1 ProteinModelPortal:Q92355
EnsemblFungi:SPAC6G9.10c.1 GeneID:2541556 KEGG:spo:SPAC6G9.10c
OrthoDB:EOG4BCHWF NextBio:20802652 GO:GO:0032575 InterPro:IPR024481
PANTHER:PTHR10887:SF164 Pfam:PF12726 Uniprot:Q92355
Length = 1687
Score = 439 (159.6 bits), Expect = 3.1e-40, Sum P(4) = 3.1e-40
Identities = 116/325 (35%), Positives = 178/325 (54%)
Query: 328 EKDLLEDLLKSFCLKRASLFLSTASSSYMLHS-VAMEPLNF--LVIDEAAQLKESESTIP 384
E DLL + LK+A + +T S S H VA LNF ++IDEAAQ E ++ IP
Sbjct: 1334 EVDLLRKKAQKAILKQADVVCATLSGSG--HDLVAHSSLNFSTVIIDEAAQAVELDTIIP 1391
Query: 385 LQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH--LLSIQYRMHP 442
L+ G K +L GD QLP V SK + + +SLF R+ +S LLSIQYRMHP
Sbjct: 1392 LRY-GAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQK-NFSNQMCLLSIQYRMHP 1449
Query: 443 SISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMV 502
IS FP+ FY++++ D + +++ + ++ P + Y +V G S N+
Sbjct: 1450 DISHFPSKKFYDSRLEDGDNMAEKTQQVWHVN-PKFTQYRLFDVRGKERTSNTMSTYNLE 1508
Query: 503 EVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSID 562
EV ++ ++ L + D IG+++PY +Q+ ++ KY S + + ++D
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVD 1568
Query: 563 GFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWE 622
GFQG E+D+I S V+S + IGFL + +R+NVALTRAR L I+GN TL + +W
Sbjct: 1569 GFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETL-KTDDLWG 1627
Query: 623 ALVHDANARQCFFNADDDKDLGKAI 647
+LV DA +R+ + D + G+ I
Sbjct: 1628 SLVDDALSRKLVESPHIDSE-GRLI 1651
Score = 80 (33.2 bits), Expect = 3.1e-40, Sum P(4) = 3.1e-40
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL 74
+N+ QA+A++ L D+ LI GPPGTGKTKT+ ++ LL
Sbjct: 1130 VNEPQAKAIMCAL-----DNNG-FTLIQGPPGTGKTKTIIGIISALL 1170
Score = 61 (26.5 bits), Expect = 3.1e-40, Sum P(4) = 3.1e-40
Identities = 18/73 (24%), Positives = 40/73 (54%)
Query: 75 QMKFRTLVCTPTNVAIKELAARVVK-LVKESVERDCRDALFFPLGDILLLGNNERLKVDS 133
+ K + L+C P+N A+ E+ R+ + + E+ E+ + P ++ +GN E + V
Sbjct: 1189 ESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEK------YIPR--VVRIGNPETINVS- 1239
Query: 134 GVEEIYLDYRVKR 146
V ++ L+Y+ ++
Sbjct: 1240 -VRDLSLEYQTEK 1251
Score = 37 (18.1 bits), Expect = 3.1e-40, Sum P(4) = 3.1e-40
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 2 DETCELCSMQSEGVWNETF 20
D C S+ S W T+
Sbjct: 213 DSDCNFVSISSPEFWERTY 231
Score = 37 (18.1 bits), Expect = 3.8e-34, Sum P(3) = 3.8e-34
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 193 DIIKEKECGKEADVSDVEIK 212
DII+ + C + S EIK
Sbjct: 1103 DIIRARPCSQPVKHSSSEIK 1122
>FB|FBgn0030354 [details] [associations]
symbol:Upf1 "Upf1" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS;IMP;NAS] [GO:0005737 "cytoplasm"
evidence=IEA;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0035195 "gene silencing by miRNA" evidence=IMP] [GO:0071456
"cellular response to hypoxia" evidence=IMP] [GO:0035145 "exon-exon
junction complex" evidence=IDA] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0071456
GO:GO:0004386 eggNOG:COG1112 GeneTree:ENSGT00550000074391 KO:K14326
OMA:MFYEGSL EMBL:AY061379 RefSeq:NP_572767.1 UniGene:Dm.3617
ProteinModelPortal:Q9VYS3 SMR:Q9VYS3 STRING:Q9VYS3 PaxDb:Q9VYS3
PRIDE:Q9VYS3 EnsemblMetazoa:FBtr0073596 GeneID:32153
KEGG:dme:Dmel_CG1559 UCSC:CG1559-RA CTD:5976 FlyBase:FBgn0030354
InParanoid:Q9VYS3 OrthoDB:EOG476HF1 PhylomeDB:Q9VYS3
GenomeRNAi:32153 NextBio:777131 Bgee:Q9VYS3 GermOnline:CG1559
Uniprot:Q9VYS3
Length = 1180
Score = 399 (145.5 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 118/342 (34%), Positives = 179/342 (52%)
Query: 296 IKYL-LHK--RRSECHFVLRKLQSSFNELN-LPSAVEKDL--LEDLLKSFCLKRASLFLS 349
+ +L LH R E + L+KLQ +E L SA EK L+ ++ L+ A +
Sbjct: 537 VSFLALHNQIRNMETNSELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADVICC 596
Query: 350 TASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESK 409
T + ++ ++IDE+ Q E E +P+ L G K +L GD CQL +V K
Sbjct: 597 TCVGAGD-GRLSRVKFTSILIDESMQSTEPECMVPVVL-GAKQLILVGDHCQLGPVVMCK 654
Query: 410 VSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYE 469
+ A +SLFERL LG L +QYRMHP +S FP+++FYE +++ R +
Sbjct: 655 KAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLK 714
Query: 470 KRFLHGPMYGPYSFINVFGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSI 527
F P F+ V G+EE S N E + V KI KA I ++ I
Sbjct: 715 LDFPWPQPERPMFFL-VTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQ---I 770
Query: 528 GIVSPYSAQ---VVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGS 584
GI++PY Q +V + GS + + +++ S+D FQG E+D+II+S VRSN
Sbjct: 771 GIITPYEGQRAYLVQYMQYQGSLH-SRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQG 829
Query: 585 IGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
IGFL++ +R+NVALTRA+ + I+GN + L K+ +W L++
Sbjct: 830 IGFLNDPRRLNVALTRAKFGIIIVGNPKVLA-KQQLWNHLLN 870
Score = 115 (45.5 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 35/115 (30%), Positives = 61/115 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRT-LVCTPT 86
LN SQ AV L++ + LI GPPGTGKT T + ++ L+++ T LVC P+
Sbjct: 452 LNRSQVYAVKHALQR-------PLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPS 504
Query: 87 NVAIKELAARVVKLVKESVERDC---RDALFFPLGDILLLGNNERLKVDSGVEEI 138
N A+ +L ++ + V R C R+A+ P+ + L ++ +S ++++
Sbjct: 505 NTAVDQLTEKIHR-TNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKL 558
>UNIPROTKB|E1C0J4 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
GeneTree:ENSGT00550000074391 EMBL:AADN02071779 IPI:IPI00598917
Ensembl:ENSGALT00000005099 NextBio:20823079 ArrayExpress:E1C0J4
Uniprot:E1C0J4
Length = 1117
Score = 402 (146.6 bits), Expect = 2.1e-39, Sum P(2) = 2.1e-39
Identities = 117/325 (36%), Positives = 170/325 (52%)
Query: 311 LRKLQSSFNELN-LPSAVEKDL--LEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF 367
L+KLQ +E L SA EK L+ + L A + T + M+
Sbjct: 573 LQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ-FRS 631
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 632 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 690
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF-LHGPMYGPYSFINV 486
G L +QYRMHP++S FP++ FYE +++ T R +K F P F V
Sbjct: 691 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR-VKKGFDFQWPQPDKPMFFYV 749
Query: 487 FGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQ 541
G+EE S N E + V KI L KA + IGI++PY Q +V
Sbjct: 750 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYM 806
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
+ GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRA
Sbjct: 807 QFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 865
Query: 602 RHCLWILGNARTLTRKKSVWEALVH 626
R+ + I+GN + L+ K+ +W L++
Sbjct: 866 RYGVIIVGNPKALS-KQPLWNHLLN 889
Score = 108 (43.1 bits), Expect = 2.1e-39, Sum P(2) = 2.1e-39
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 470 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 522
Query: 87 NVAIKELAARVVKLVKESVERDC---RDALFFPLGDILLLGNNERLKVDS 133
N+A+ +L ++ + + V R C R+A+ P+ + L +N+ +DS
Sbjct: 523 NIAVDQLTEKIHQTGLKVV-RLCAKSREAIDSPVSFLAL--HNQIRNMDS 569
>UNIPROTKB|E1BEK9 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0044530 "supraspliceosomal complex" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] InterPro:IPR018999
Pfam:PF09416 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0007049 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145
GeneTree:ENSGT00550000074391 OMA:MFYEGSL EMBL:DAAA02019036
IPI:IPI00685259 Ensembl:ENSBTAT00000027868 Uniprot:E1BEK9
Length = 1127
Score = 402 (146.6 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 117/325 (36%), Positives = 170/325 (52%)
Query: 311 LRKLQSSFNELN-LPSAVEKDL--LEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF 367
L+KLQ +E L SA EK L+ + L A + T + M+
Sbjct: 583 LQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ-FRS 641
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 642 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 700
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF-LHGPMYGPYSFINV 486
G L +QYRMHP++S FP++ FYE +++ T R +K F P F V
Sbjct: 701 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR-VKKGFDFQWPQPDKPMFFYV 759
Query: 487 FGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQ 541
G+EE S N E + V KI L KA + IGI++PY Q +V
Sbjct: 760 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYM 816
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
+ GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRA
Sbjct: 817 QFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 875
Query: 602 RHCLWILGNARTLTRKKSVWEALVH 626
R+ + I+GN + L+ K+ +W L++
Sbjct: 876 RYGVIIVGNPKALS-KQPLWNHLLN 899
Score = 108 (43.1 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 480 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 532
Query: 87 NVAIKELAARVVKLVKESVERDC---RDALFFPLGDILLLGNNERLKVDS 133
N+A+ +L ++ + + V R C R+A+ P+ + L +N+ +DS
Sbjct: 533 NIAVDQLTEKIHQTGLKVV-RLCAKSREAIDSPVSFLAL--HNQIRNMDS 579
>UNIPROTKB|E1C0J3 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0035145 "exon-exon
junction complex" evidence=IEA] [GO:0044530 "supraspliceosomal
complex" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AADN02071779 IPI:IPI00571950 Ensembl:ENSGALT00000005101
ArrayExpress:E1C0J3 Uniprot:E1C0J3
Length = 1128
Score = 402 (146.6 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 117/325 (36%), Positives = 170/325 (52%)
Query: 311 LRKLQSSFNELN-LPSAVEKDL--LEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF 367
L+KLQ +E L SA EK L+ + L A + T + M+
Sbjct: 584 LQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ-FRS 642
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 643 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 701
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF-LHGPMYGPYSFINV 486
G L +QYRMHP++S FP++ FYE +++ T R +K F P F V
Sbjct: 702 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR-VKKGFDFQWPQPDKPMFFYV 760
Query: 487 FGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQ 541
G+EE S N E + V KI L KA + IGI++PY Q +V
Sbjct: 761 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYM 817
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
+ GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRA
Sbjct: 818 QFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 876
Query: 602 RHCLWILGNARTLTRKKSVWEALVH 626
R+ + I+GN + L+ K+ +W L++
Sbjct: 877 RYGVIIVGNPKALS-KQPLWNHLLN 900
Score = 108 (43.1 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 481 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 533
Query: 87 NVAIKELAARVVKLVKESVERDC---RDALFFPLGDILLLGNNERLKVDS 133
N+A+ +L ++ + + V R C R+A+ P+ + L +N+ +DS
Sbjct: 534 NIAVDQLTEKIHQTGLKVV-RLCAKSREAIDSPVSFLAL--HNQIRNMDS 580
>UNIPROTKB|Q92900 [details] [associations]
symbol:UPF1 "Regulator of nonsense transcripts 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;IMP;TAS] [GO:0006449 "regulation of translational
termination" evidence=IMP;NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000785 "chromatin"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0007049 "cell cycle" evidence=IMP] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005524 GO:GO:0010467 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0003723 GO:GO:0007049
GO:GO:0006406 GO:GO:0000932 eggNOG:COG1112 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145 EMBL:AC003972
GO:GO:0044530 GO:GO:0006449 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL CTD:5976 EMBL:U65533 EMBL:U59323 EMBL:D86988
EMBL:AF074016 EMBL:BC039817 IPI:IPI00034049 IPI:IPI00399170
RefSeq:NP_002902.2 UniGene:Hs.515266 PDB:2GJK PDB:2GK6 PDB:2GK7
PDB:2IYK PDB:2WJV PDB:2WJY PDB:2XZO PDB:2XZP PDBsum:2GJK
PDBsum:2GK6 PDBsum:2GK7 PDBsum:2IYK PDBsum:2WJV PDBsum:2WJY
PDBsum:2XZO PDBsum:2XZP ProteinModelPortal:Q92900 SMR:Q92900
DIP:DIP-29875N IntAct:Q92900 MINT:MINT-5005507 STRING:Q92900
PhosphoSite:Q92900 DMDM:17380291 PaxDb:Q92900 PRIDE:Q92900
Ensembl:ENST00000262803 GeneID:5976 KEGG:hsa:5976 UCSC:uc002nkf.3
UCSC:uc002nkg.3 GeneCards:GC19P018942 HGNC:HGNC:9962 HPA:HPA019587
HPA:HPA020857 MIM:601430 neXtProt:NX_Q92900 PharmGKB:PA34328
HOVERGEN:HBG061556 InParanoid:Q92900 ChiTaRS:UPF1
EvolutionaryTrace:Q92900 GenomeRNAi:5976 NextBio:23259
ArrayExpress:Q92900 Bgee:Q92900 CleanEx:HS_UPF1
Genevestigator:Q92900 GermOnline:ENSG00000005007 Uniprot:Q92900
Length = 1129
Score = 402 (146.6 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 117/325 (36%), Positives = 170/325 (52%)
Query: 311 LRKLQSSFNELN-LPSAVEKDL--LEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF 367
L+KLQ +E L SA EK L+ + L A + T + M+
Sbjct: 585 LQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ-FRS 643
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 644 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 702
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF-LHGPMYGPYSFINV 486
G L +QYRMHP++S FP++ FYE +++ T R +K F P F V
Sbjct: 703 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR-VKKGFDFQWPQPDKPMFFYV 761
Query: 487 FGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQ 541
G+EE S N E + V KI L KA + IGI++PY Q +V
Sbjct: 762 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYM 818
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
+ GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRA
Sbjct: 819 QFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 877
Query: 602 RHCLWILGNARTLTRKKSVWEALVH 626
R+ + I+GN + L+ K+ +W L++
Sbjct: 878 RYGVIIVGNPKALS-KQPLWNHLLN 901
Score = 108 (43.1 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 482 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 534
Query: 87 NVAIKELAARVVKLVKESVERDC---RDALFFPLGDILLLGNNERLKVDS 133
N+A+ +L ++ + + V R C R+A+ P+ + L +N+ +DS
Sbjct: 535 NIAVDQLTEKIHQTGLKVV-RLCAKSREAIDSPVSFLAL--HNQIRNMDS 581
>UNIPROTKB|E2RL81 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AAEX03012279 Ensembl:ENSCAFT00000023180 Uniprot:E2RL81
Length = 1130
Score = 402 (146.6 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 117/325 (36%), Positives = 170/325 (52%)
Query: 311 LRKLQSSFNELN-LPSAVEKDL--LEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF 367
L+KLQ +E L SA EK L+ + L A + T + M+
Sbjct: 586 LQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ-FRS 644
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 645 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 703
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF-LHGPMYGPYSFINV 486
G L +QYRMHP++S FP++ FYE +++ T R +K F P F V
Sbjct: 704 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR-VKKGFDFQWPQPDKPMFFYV 762
Query: 487 FGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQ 541
G+EE S N E + V KI L KA + IGI++PY Q +V
Sbjct: 763 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYM 819
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
+ GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRA
Sbjct: 820 QFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 878
Query: 602 RHCLWILGNARTLTRKKSVWEALVH 626
R+ + I+GN + L+ K+ +W L++
Sbjct: 879 RYGVIIVGNPKALS-KQPLWNHLLN 902
Score = 108 (43.1 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 483 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 535
Query: 87 NVAIKELAARVVKLVKESVERDC---RDALFFPLGDILLLGNNERLKVDS 133
N+A+ +L ++ + + V R C R+A+ P+ + L +N+ +DS
Sbjct: 536 NIAVDQLTEKIHQTGLKVV-RLCAKSREAIDSPVSFLAL--HNQIRNMDS 582
>MGI|MGI:107995 [details] [associations]
symbol:Upf1 "UPF1 regulator of nonsense transcripts homolog
(yeast)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000785 "chromatin" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006449 "regulation of
translational termination" evidence=ISO] [GO:0007049 "cell cycle"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=ISO] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=ISO] InterPro:IPR018999 Pfam:PF09416 MGI:MGI:107995
GO:GO:0005524 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0000785
GO:GO:0003682 GO:GO:0003723 GO:GO:0007049 GO:GO:0000932
eggNOG:COG1112 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GO:GO:0006449 GeneTree:ENSGT00550000074391
HOGENOM:HOG000205990 KO:K14326 OMA:MFYEGSL CTD:5976
HOVERGEN:HBG061556 ChiTaRS:UPF1 EMBL:AF322655 EMBL:AY597039
EMBL:AY597038 EMBL:AK148196 EMBL:BC030916 EMBL:BC052149
EMBL:BC056442 EMBL:AF182947 IPI:IPI00420949 IPI:IPI00850525
RefSeq:NP_001116301.1 RefSeq:NP_109605.2 UniGene:Mm.390048
ProteinModelPortal:Q9EPU0 SMR:Q9EPU0 STRING:Q9EPU0
PhosphoSite:Q9EPU0 PaxDb:Q9EPU0 PRIDE:Q9EPU0
Ensembl:ENSMUST00000075666 GeneID:19704 KEGG:mmu:19704
UCSC:uc009mab.2 UCSC:uc012gfa.1 InParanoid:Q9EPU0 OrthoDB:EOG4P8FH8
NextBio:297078 Bgee:Q9EPU0 Genevestigator:Q9EPU0
GermOnline:ENSMUSG00000058301 Uniprot:Q9EPU0
Length = 1124
Score = 401 (146.2 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 117/324 (36%), Positives = 169/324 (52%)
Query: 311 LRKLQSSFNELN-LPSAVEKDL--LEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF 367
L+KLQ +E L SA EK L+ + L A + T + M+
Sbjct: 580 LQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ-FRS 638
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 639 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 697
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF-LHGPMYGPYSFINV 486
G L +QYRMHP++S FP++ FYE +++ T R +K F P F V
Sbjct: 698 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR-VKKGFDFQWPQPDKPMFFYV 756
Query: 487 FGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQ 541
G+EE S N E + V KI L KA + IGI++PY Q +V
Sbjct: 757 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYM 813
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
+ GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRA
Sbjct: 814 QFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 872
Query: 602 RHCLWILGNARTLTRKKSVWEALV 625
R+ + I+GN + L+ K+ +W L+
Sbjct: 873 RYGVIIVGNPKALS-KQPLWNHLL 895
Score = 108 (43.1 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 477 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 529
Query: 87 NVAIKELAARVVKLVKESVERDC---RDALFFPLGDILLLGNNERLKVDS 133
N+A+ +L ++ + + V R C R+A+ P+ + L +N+ +DS
Sbjct: 530 NIAVDQLTEKIHQTGLKVV-RLCAKSREAIDSPVSFLAL--HNQIRNMDS 576
>UNIPROTKB|E1C4T7 [details] [associations]
symbol:Gga.18015 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654
GO:GO:0006302 GeneTree:ENSGT00580000081652 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:AADN02026516 IPI:IPI00575045
Ensembl:ENSGALT00000005801 Uniprot:E1C4T7
Length = 2503
Score = 403 (146.9 bits), Expect = 3.5e-39, Sum P(2) = 3.5e-39
Identities = 111/304 (36%), Positives = 167/304 (54%)
Query: 362 MEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLF 421
++P + +++DEA Q E E+ IPL + VL GD QLP ++S + E +G+SL
Sbjct: 2195 LDPFSCVIVDEAGQSCEVETLIPL-IHRCNKLVLVGDPRQLPPTIKSIKAQEYGYGQSLM 2253
Query: 422 ERLS-YL------GYSKHL----LSIQYRMHPSISCFPNSYFYENKIR-DSSTVRKRSYE 469
RL +L + L L++QYRMHP I FP+SY Y+ ++ D +T R
Sbjct: 2254 ARLQRHLEEQVQNNLLRRLPVVQLTVQYRMHPDICLFPSSYIYDKTLKTDKATEENRCSS 2313
Query: 470 KRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGI 529
+ P + PY +V G EE + S N EV +V++I+ + + D + IGI
Sbjct: 2314 E----WP-FQPYLVFDVGDGHEERDKDSFSNPQEVKLVLEIIRTIKEKRKDLGLR-RIGI 2367
Query: 530 VSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNG-GSIGFL 588
++PYSAQ IQE+L + N++ +V ++D FQG E+D II++ VR+N+ GSIGFL
Sbjct: 2368 ITPYSAQKKKIQEELDRVFKNNS--PGEVDTVDAFQGREKDCIIVTCVRANSSKGSIGFL 2425
Query: 589 SNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAIL 648
++ +R+NV +TRAR L+ILG +TL K W L+ DA R D K K L
Sbjct: 2426 ASLQRLNVTITRARFSLFILGRLKTLMENKD-WNKLIQDAQRRGAIIKTSD-KSYKKDAL 2483
Query: 649 AVKK 652
+ K
Sbjct: 2484 KILK 2487
Score = 115 (45.5 bits), Expect = 3.5e-39, Sum P(2) = 3.5e-39
Identities = 42/134 (31%), Positives = 62/134 (46%)
Query: 29 NDSQAQAVLSCLRQMRCDHK--ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRT------ 80
N+ Q +A+ + ++ H A I LI GPPGTGK+KT+ LL +L+ R
Sbjct: 1959 NEDQKRAIETAYAMVK-QHPGLAKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTSKK 2017
Query: 81 ---------LVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV 131
LVC P+N AI EL +++ KE + R GDI L+ +
Sbjct: 2018 NAKIKQNRFLVCAPSNAAIDELMKKIIIAFKEKCQN--RQEPLGNCGDIKLVRLGAERSI 2075
Query: 132 DSGVEEIYLDYRVK 145
+S V LD +V+
Sbjct: 2076 NSEVRAFSLDKQVE 2089
Score = 38 (18.4 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 23 SLSSTLNDSQAQAVLSCLRQM 43
SL LN + Q + +CL+Q+
Sbjct: 568 SLGWQLNIQETQELQTCLKQV 588
>ZFIN|ZDB-GENE-040426-2836 [details] [associations]
symbol:upf1 "upf1 regulator of nonsense
transcripts homolog (yeast)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] InterPro:IPR018999 Pfam:PF09416
ZFIN:ZDB-GENE-040426-2836 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0009790 GO:GO:0004386
HOGENOM:HOG000205990 KO:K14326 CTD:5976 HOVERGEN:HBG061556
EMBL:BC045353 EMBL:FM986817 IPI:IPI00491565 RefSeq:NP_998639.1
UniGene:Dr.96025 SMR:Q7ZVZ4 STRING:Q7ZVZ4 GeneID:406783
KEGG:dre:406783 NextBio:20818296 Uniprot:Q7ZVZ4
Length = 1100
Score = 399 (145.5 bits), Expect = 4.2e-39, Sum P(2) = 4.2e-39
Identities = 116/325 (35%), Positives = 170/325 (52%)
Query: 311 LRKLQSSFNELN-LPSAVEKDL--LEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF 367
L+KLQ +E L S+ EK L+ + L A + T + M+
Sbjct: 554 LQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ-FRS 612
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 613 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 671
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF-LHGPMYGPYSFINV 486
G L +QYRMHP++S FP++ FYE +++ T R +K F P F V
Sbjct: 672 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR-LKKGFDFQWPQPDKPMFFYV 730
Query: 487 FGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQ 541
G+EE S N E + V KI L KA + IGI++PY Q +V
Sbjct: 731 TQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ---IGIITPYEGQRSYLVQYM 787
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
+ GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRA
Sbjct: 788 QFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 846
Query: 602 RHCLWILGNARTLTRKKSVWEALVH 626
R+ + I+GN + L+ K+ +W L++
Sbjct: 847 RYGVIIVGNPKALS-KQPLWNHLLN 870
Score = 108 (43.1 bits), Expect = 4.2e-39, Sum P(2) = 4.2e-39
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 451 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 503
Query: 87 NVAIKELAARVVKLVKESVERDC---RDALFFPLGDILLLGNNERLKVDS 133
N+A+ +L ++ + + V R C R+A+ P+ + L +N+ +DS
Sbjct: 504 NIAVDQLTEKIHQTGLKVV-RLCAKSREAIDSPVSFLAL--HNQIRNMDS 550
>DICTYBASE|DDB_G0274399 [details] [associations]
symbol:DDB_G0274399 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR003593 SMART:SM00382
dictyBase:DDB_G0274399 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000012 GO:GO:0004386 eggNOG:COG1112 RefSeq:XP_644230.1
ProteinModelPortal:Q86AS0 EnsemblProtists:DDB0237968 GeneID:8619659
KEGG:ddi:DDB_G0274399 OMA:LIMISLH Uniprot:Q86AS0
Length = 967
Score = 404 (147.3 bits), Expect = 5.7e-39, Sum P(4) = 5.7e-39
Identities = 109/308 (35%), Positives = 164/308 (53%)
Query: 336 LKSFCLKRASLFLSTAS-SSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAV 394
+++ L A + +T S S L + + ++IDEAAQ E+ + IP+Q G K V
Sbjct: 555 IRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQ-HGCKKVV 613
Query: 395 LFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYE 454
L GD QLPA + S ++ + + +SLF+RL S H+L+ QYRMH I FP+ +FY+
Sbjct: 614 LVGDPKQLPATIISPLAIKYKYDQSLFQRLQEKN-SPHMLTTQYRMHSLIRAFPSRHFYQ 672
Query: 455 NKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVF-------GGREEFIEHSCRNMVEVSVV 507
+ + D + R+ + P +GP F ++ GG F EH C+ +
Sbjct: 673 DLLLDGPNIPSRA--THYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECK------MA 724
Query: 508 MKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGG 567
M + K + D IGI+SPY QV+A++E + N G ++ ++DGFQG
Sbjct: 725 MYLFQLFTKVYPDEDFASRIGIISPYRQQVLALREI----FKNYPGISID--TVDGFQGR 778
Query: 568 EEDLIIISTVRS--NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALV 625
E ++II S VR+ G IGFLS+ +R+NVALTR R L ILGN + L+ K W L+
Sbjct: 779 EREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKD-WNELI 837
Query: 626 -HDANARQ 632
H N +Q
Sbjct: 838 QHTQNNQQ 845
Score = 90 (36.7 bits), Expect = 5.7e-39, Sum P(4) = 5.7e-39
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL 74
SST NDSQ A+ S L + A I LI GPPGTGKT + L+ +LL
Sbjct: 332 SSTYNDSQLNALTSAL-----EGNA-ITLIQGPPGTGKTHVILGLISVLL 375
Score = 59 (25.8 bits), Expect = 5.7e-39, Sum P(4) = 5.7e-39
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 77 KFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKVDSGVE 136
K R L+C P+N A+ E+ +R+++ + D R + P +++ +G S VE
Sbjct: 461 KRRILLCAPSNGAVDEIVSRLIR--DGLLNADGRK--YNP--NLVRVGPGSH----SDVE 510
Query: 137 EIYLDYRVK 145
+ LDY V+
Sbjct: 511 SVSLDYMVR 519
Score = 38 (18.4 bits), Expect = 5.7e-39, Sum P(4) = 5.7e-39
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 778 TAEFINHCKEKSIEGNLEVPKTWTATSN-------VVRFKNLADNDNNSGS 821
T E IN K+K IE + K S + + K L +NDNN+ +
Sbjct: 885 TEEEINLQKQKDIEKRKKQHKRQKQKSKENDKKKQLKKRKELNNNDNNNNN 935
>SGD|S000004685 [details] [associations]
symbol:NAM7 "ATP-dependent RNA helicase of the SFI
superfamily" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IGI;IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016567 "protein ubiquitination"
evidence=IMP;IDA;IPI] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005844 "polysome" evidence=TAS] [GO:0003676 "nucleic acid
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;TAS]
[GO:0006449 "regulation of translational termination" evidence=TAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006452 "translational frameshifting" evidence=IMP] [GO:0008186
"RNA-dependent ATPase activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR018999 Pfam:PF09416 SMART:SM00382 SGD:S000004685
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003676 GO:GO:0016567
GO:GO:0030466 EMBL:BK006946 EMBL:Z49259 GO:GO:0005844 GO:GO:0008298
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0004004
GO:GO:0070478 GO:GO:0006449 GeneTree:ENSGT00550000074391
EMBL:X62394 EMBL:M76659 PIR:S23408 RefSeq:NP_013797.1 PDB:2XZL
PDBsum:2XZL ProteinModelPortal:P30771 SMR:P30771 DIP:DIP-2373N
IntAct:P30771 MINT:MINT-492322 STRING:P30771 PaxDb:P30771
PeptideAtlas:P30771 EnsemblFungi:YMR080C GeneID:855104
KEGG:sce:YMR080C CYGD:YMR080c HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL OrthoDB:EOG405W86 EvolutionaryTrace:P30771
NextBio:978431 Genevestigator:P30771 GermOnline:YMR080C
Uniprot:P30771
Length = 971
Score = 384 (140.2 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 98/266 (36%), Positives = 151/266 (56%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVESKVSNEACFGRSLFERLSY 426
++IDE+ Q E E IP+ + G K +L GD QL P ++E K + +A +SLFERL
Sbjct: 569 VLIDESTQASEPECLIPI-VKGAKQVILVGDHQQLGPVILERKAA-DAGLKQSLFERLIS 626
Query: 427 LGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYG-PYSFIN 485
LG+ L +QYRM+P +S FP++ FYE +++ T+ +R+ P+ G P F
Sbjct: 627 LGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWA 686
Query: 486 VFGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQE- 542
+G REE + S N +E +I+ L++ D + IG+++PY Q I +
Sbjct: 687 NYG-REEISANGTSFLNRIEAMNCERIITKLFR---DGVKPEQIGVITPYEGQRAYILQY 742
Query: 543 -KLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
++ V+V S+D FQG E+D II+S VR+N +IGFL + +R+NV LTRA
Sbjct: 743 MQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRA 802
Query: 602 RHCLWILGNARTLTRKKSVWE-ALVH 626
++ L ILGN R+L R ++W L+H
Sbjct: 803 KYGLVILGNPRSLARN-TLWNHLLIH 827
Score = 120 (47.3 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPT 86
LN SQ+ AV L++ + LI GPPGTGKT T + ++ L ++ K R LVC P+
Sbjct: 409 LNSSQSNAVSHVLQR-------PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 461
Query: 87 NVAIKELAARV 97
NVA+ LAA++
Sbjct: 462 NVAVDHLAAKL 472
Score = 41 (19.5 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 330 DLLEDLLKSFCLKRASL--FLSTASSSYMLHSVAME-PL-NFLVIDEAAQLKESES 381
D ++D LK F + + S+ +L + + ++ + PL I AQL S+S
Sbjct: 359 DRMQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQS 414
>UNIPROTKB|G4NIZ8 [details] [associations]
symbol:MGG_02784 "DNA-binding protein SMUBP-2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR024714 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0008033 GO:GO:0004386 EMBL:CM001237
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_003720957.1 EnsemblFungi:MGG_02784T0 GeneID:2682672
KEGG:mgr:MGG_02784 Uniprot:G4NIZ8
Length = 2037
Score = 435 (158.2 bits), Expect = 8.5e-39, Sum P(2) = 8.5e-39
Identities = 113/313 (36%), Positives = 172/313 (54%)
Query: 326 AVEKDLLEDLLKSFCLKRASLFLSTASSSY--MLHSVAMEPLNFLVIDEAAQLKESESTI 383
A E ++ ++ L A + +T S + M S+ +E ++IDEAAQ E + I
Sbjct: 1534 AREAEIKRRNIQQSILSEAHVLCATLSGAGHDMFKSLQVE-FETVIIDEAAQCVELSALI 1592
Query: 384 PLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSK-HLLSIQYRMHP 442
PL+ G +L GD QLP V S+ + + +SLF R+ K HLL QYRMHP
Sbjct: 1593 PLKY-GASKCILVGDPKQLPPTVLSQSAARYGYDQSLFVRMQQNHPGKVHLLDCQYRMHP 1651
Query: 443 SISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIE-HSCRNM 501
IS +P+ FYE + D S + K ++ + P+ GPY F +V G +E S N
Sbjct: 1652 EISLYPSKEFYEGLLADGSDMAKLR-QQPWHDNPLLGPYRFFDVEGIQERGSRGQSLVNT 1710
Query: 502 VEVSVVMKILLNL---YKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKV 558
E++V ++I Y + ID K K IGI++PY AQ+ A+++K ++ ++
Sbjct: 1711 NEINVAIQIYTKFQADYASSIDMKGK--IGIITPYKAQLFALRQKFQERWGEGVLEDIEF 1768
Query: 559 MSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKK 618
+ D FQG E ++II S VR++ G IGF+++ +R+NV LTRAR LWILG++R L R+
Sbjct: 1769 NTTDAFQGRECEIIIFSCVRASPTGGIGFMTDIRRMNVGLTRARSSLWILGDSRAL-RQG 1827
Query: 619 SVWEALVHDANAR 631
W L+ D+ AR
Sbjct: 1828 EFWNKLIEDSKAR 1840
Score = 76 (31.8 bits), Expect = 8.5e-39, Sum P(2) = 8.5e-39
Identities = 38/141 (26%), Positives = 58/141 (41%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT--- 84
LN QA A+++ D +Q GPPGTGKTKT+ ++ LL K T
Sbjct: 1327 LNRGQAAAIINAKEN---DGFTLVQ---GPPGTGKTKTIIAMVGALLTGKISRAPPTRIK 1380
Query: 85 PTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV---------DSGV 135
P N A + +A +++ + D L G GN ++ V ++ V
Sbjct: 1381 PANGADEPMAQKLLVCAPSNAAVD-ELVLRLKAGIKDTNGNTHKINVLRLGRSDAINAAV 1439
Query: 136 EEIYLDYRVKRLADCFAPLTG 156
++ LD VK D + G
Sbjct: 1440 RDVTLDELVKEKMDAALNVNG 1460
Score = 44 (20.5 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 10 MQSEGVWNETFGPSLSSTLNDSQAQAVLSCLRQMRC 45
+++E + E GP SSTL + AV++ + C
Sbjct: 151 LKAESLLKE-HGPMKSSTLTKKEPTAVVALYEALCC 185
Score = 39 (18.8 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 205 DVSDVEIKPFLEFVRDRFK 223
+V D E P L F DR +
Sbjct: 1301 EVLDAEPSPILNFSNDRIQ 1319
>POMBASE|SPAC16C9.06c [details] [associations]
symbol:upf1 "ATP-dependent RNA helicase Upf1"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0002184 "cytoplasmic translational
termination" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006415
"translational termination" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 PomBase:SPAC16C9.06c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0004004 GO:GO:0002184 HOGENOM:HOG000205990
KO:K14326 OMA:MFYEGSL OrthoDB:EOG405W86 PIR:S62476
RefSeq:NP_593080.1 ProteinModelPortal:Q09820 SMR:Q09820
STRING:Q09820 PRIDE:Q09820 EnsemblFungi:SPAC16C9.06c.1
GeneID:2542327 KEGG:spo:SPAC16C9.06c NextBio:20803388
Uniprot:Q09820
Length = 925
Score = 387 (141.3 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 114/319 (35%), Positives = 170/319 (53%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVI 370
L KL+S NEL++ + +L + L+ A + T + ++ ++I
Sbjct: 505 LLKLRSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGAGD-RRISKYKFRSVLI 563
Query: 371 DEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVESKVSNEACFGRSLFERLSYLGY 429
DEA Q E E IPL L G K VL GD QL P ++ KV+ A +SLFERL LG
Sbjct: 564 DEATQASEPECMIPLVL-GAKQVVLVGDHQQLGPVVMNKKVAL-ASLSQSLFERLIILGN 621
Query: 430 SKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFG- 488
S L +QYRMHP +S FP++ FYE +++ T +R R + P P S + +
Sbjct: 622 SPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERI--ARHVDFPWIQPDSPLMFYAN 679
Query: 489 -GREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQE 542
G+EE S N E S KI+ ++ + ++ IGIV+PY Q +V +
Sbjct: 680 FGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ---IGIVTPYDGQRSYIVQYMQ 736
Query: 543 KLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRAR 602
GS + AV+V S+D FQG E+D II+S VRS+ IGF+++ +R+NVALTRA+
Sbjct: 737 NNGSMQKDLYK-AVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAK 795
Query: 603 HCLWILGNARTLTRKKSVW 621
+ + +LGN + L K ++W
Sbjct: 796 YGVIVLGNPKVLA-KHALW 813
Score = 109 (43.4 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFR-- 79
P+L LN SQ++AV + L + + LI GPPGTGKT T + ++ L M+ R
Sbjct: 388 PNLPK-LNASQSEAVRAVLSK-------PLSLIQGPPGTGKTVTSASVVYHLATMQSRKR 439
Query: 80 -----TLVCTPTNVAIKELAARV 97
LVC P+NVA+ +LA ++
Sbjct: 440 KSHSPVLVCAPSNVAVDQLAEKI 462
Score = 48 (22.0 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 764 PKVVARLDNIYVKYTAEFINHCKEKS--IEGNLEVPKTWTAT 803
PKV+A+ Y F+ HCKEK +EG L + ++ T
Sbjct: 804 PKVLAKHALWY-----HFVLHCKEKGYLVEGTLNSLQKFSLT 840
>DICTYBASE|DDB_G0288923 [details] [associations]
symbol:upf1 "regulator of nonsense transcripts 1"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;IC] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 dictyBase:DDB_G0288923
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000126
GenomeReviews:CM000154_GR GO:GO:0003676 eggNOG:COG1112
GO:GO:0004004 KO:K14326 RefSeq:XP_636490.1
ProteinModelPortal:Q54I89 SMR:Q54I89 STRING:Q54I89
EnsemblProtists:DDB0233746 GeneID:8626873 KEGG:ddi:DDB_G0288923
InParanoid:Q54I89 Uniprot:Q54I89
Length = 1331
Score = 396 (144.5 bits), Expect = 3.2e-38, Sum P(3) = 3.2e-38
Identities = 115/326 (35%), Positives = 171/326 (52%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF--L 368
LRKL+ +F L+ L +++ L++A + +T + + F +
Sbjct: 647 LRKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGA---GDPRLSQFRFPHI 703
Query: 369 VIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVESKVSNEACFGRSLFERLSYL 427
+IDE+ Q E E IPL + G K +L GD QL P ++ KV +A +SLFERL L
Sbjct: 704 LIDESTQASEPECLIPLMM-GAKQVILVGDHRQLGPVLLCKKVV-DAGLSQSLFERLISL 761
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVF 487
G+ L+IQYRMHPS++ FP++ YE ++ + R + +F P F N
Sbjct: 762 GHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMFFFNCT 821
Query: 488 GGRE-EFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLG- 545
G E S N E S+ KI+ + + S IGI++PY Q I +
Sbjct: 822 GSEEISSSGTSFINTTEASICEKIVTKFLE--LGSLPG-QIGIITPYEGQRAYITSHMQK 878
Query: 546 SKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHC 604
S +N + +++V S+D FQG E+D II+S VRSN+ IGFL + +R+NVALTRAR
Sbjct: 879 SGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFG 938
Query: 605 LWILGNARTLTRKKSVWEALV-HDAN 629
L ILGNA+ L+ K +W +L+ H N
Sbjct: 939 LIILGNAKVLS-KDPLWNSLISHFKN 963
Score = 114 (45.2 bits), Expect = 3.2e-38, Sum P(3) = 3.2e-38
Identities = 44/136 (32%), Positives = 72/136 (52%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSML---LVILLQMKFRTLVCT 84
LN+SQ AV L A + LI GPPGTGKT S + LV ++ + LVCT
Sbjct: 537 LNESQISAVNKVLT-------APLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCT 589
Query: 85 PTNVAIKELAARV----VKLVKESVERDCRDALFFPLGDILLLGNNERLKVDS-GVEEIY 139
P+NVAI +L ++ +K+V+ S + R+ + P+ + L + + K+D G E+
Sbjct: 590 PSNVAIDQLTGKLHEIGLKVVRLSSK--LREEVASPVEHLTL--HKQVYKLDQMGDGELG 645
Query: 140 LDYRVKRLADCFAPLT 155
++++L + F L+
Sbjct: 646 ---KLRKLKEAFGSLS 658
Score = 41 (19.5 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 180 DNESMKQSEDINGDIIKEKECGKEAD 205
D+E ++ E I+GD + G+E+D
Sbjct: 84 DDEDQEEEEYISGDDLNNN--GQESD 107
Score = 40 (19.1 bits), Expect = 3.2e-38, Sum P(3) = 3.2e-38
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 808 RFKNLADND-NNSGSDLSGAAFDSRNYAENSNVSESLS 844
RF N +N+ NN+ ++ + ++ N N+N++ + S
Sbjct: 1221 RFNNNNNNNINNNNNNNNNNNNNNNNNNNNNNINNNNS 1258
Score = 40 (19.1 bits), Expect = 3.2e-38, Sum P(3) = 3.2e-38
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 804 SNVVRFKNLADNDNNSGSDLSGAAFDSRNYAENSNVSES 842
+N+ N +N+NN+ ++ + + N ++N N ++S
Sbjct: 1228 NNINNNNNNNNNNNNNNNNNNNNNNINNNNSKNQNQNQS 1266
>POMBASE|SPBC29A10.10c [details] [associations]
symbol:SPBC29A10.10c "tRNA-splicing endonuclease
positive effector (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=ISO] [GO:0016180 "snRNA processing" evidence=ISO]
[GO:0035649 "Nrd1 complex" evidence=ISO] [GO:0043144 "snoRNA
processing" evidence=ISO] InterPro:IPR024714 PomBase:SPBC29A10.10c
GO:GO:0005524 GO:GO:0005634 EMBL:CU329671 GO:GO:0008033
eggNOG:COG1112 GO:GO:0006364 GO:GO:0004004 GO:GO:0006369
GO:GO:0043144 GO:GO:0016180 KO:K10706 GO:GO:0035649
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
OrthoDB:EOG4MPMZ6 PIR:T40065 RefSeq:NP_596055.1
ProteinModelPortal:O94387 EnsemblFungi:SPBC29A10.10c.1
GeneID:2540523 KEGG:spo:SPBC29A10.10c NextBio:20801650
Uniprot:O94387
Length = 1944
Score = 438 (159.2 bits), Expect = 8.5e-38, Sum P(4) = 8.5e-38
Identities = 112/309 (36%), Positives = 177/309 (57%)
Query: 330 DLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEP-LNF--LVIDEAAQLKESESTIPLQ 386
D+L+ +++ L+ A + +T S+S H + + L F ++IDEAAQ E S IPL+
Sbjct: 1474 DVLKKQIQNQLLQEADIVCATLSASG--HELLLNAGLTFRTVIIDEAAQAVELSSIIPLK 1531
Query: 387 LSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL-SYLGYSKHLLSIQYRMHPSIS 445
G + V+ GD QLP V SK S + + +SL+ R+ S LLSIQYRM+P IS
Sbjct: 1532 Y-GCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEIS 1590
Query: 446 CFPNSYFYENKIRDS---STVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMV 502
FP+ +FY +K+ D S V R + + P G Y F NV G S N+
Sbjct: 1591 RFPSKFFYNSKLLDGPNMSAVTSRPWHE----DPQLGIYRFFNVHGTEAFSNSKSLYNVE 1646
Query: 503 EVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSID 562
E S ++ + L + +++ + IG+V+PY +QV ++ + KY + + + ++D
Sbjct: 1647 EASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVD 1706
Query: 563 GFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWE 622
GFQG E+D+II S VRS+ G IGFL + +R+NVALTRA+ L+I+GN++ L ++ ++
Sbjct: 1707 GFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQE-DIFY 1765
Query: 623 ALVHDANAR 631
+L+ DA R
Sbjct: 1766 SLIEDAKTR 1774
Score = 67 (28.6 bits), Expect = 8.5e-38, Sum P(4) = 8.5e-38
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 53 LIWGPPGTGKTKTV-SMLLVIL 73
LI GPPGTGKTKT+ M+ +L
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVL 1311
Score = 55 (24.4 bits), Expect = 8.5e-38, Sum P(4) = 8.5e-38
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 77 KFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV 131
K + L+C P+N AI E+ R+ K V D FFP ++ +G + + V
Sbjct: 1331 KNKILICAPSNAAIDEILLRI----KAGVY-DHEGIKFFP--KVIRVGFGDSISV 1378
Score = 39 (18.8 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 308 HFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASS 353
H L + N LPS D + ++KS+ + + ASS
Sbjct: 1238 HLPLSQRILDANVTRLPSNFTDDKKQKIMKSYGVNEPQAYAIYASS 1283
Score = 38 (18.4 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 163 SMVDFLDNCVSLYHTYIDNESMKQSEDINGDIIKEKECGK---EADVSDVEIKPFL 215
S+ DF C++++H + + + + DI + +E K + D S KP L
Sbjct: 96 SLDDFKSLCLNIFHFDPNTLEIVMEKIYSWDIFRLQEVLKTVPKIDTSSAS-KPIL 150
Score = 37 (18.1 bits), Expect = 8.5e-38, Sum P(4) = 8.5e-38
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 184 MKQSEDINGDIIKEKECGKEADVSDVEIK 212
+K+ + + D+ K + GK + + + +++
Sbjct: 1418 IKKRDSLREDLEKFRSTGKNSSILEAQLR 1446
>WB|WBGene00004880 [details] [associations]
symbol:smg-2 species:6239 "Caenorhabditis elegans"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IGI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA;TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030538
"embryonic genitalia morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0051721 "protein phosphatase 2A
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
EMBL:AF074017 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016246 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0040035 eggNOG:COG1112
GO:GO:0004004 GO:GO:0030538 HOGENOM:HOG000205990 KO:K14326
EMBL:FO081800 PIR:T43280 RefSeq:NP_490829.1
ProteinModelPortal:O76512 SMR:O76512 MINT:MINT-255670 STRING:O76512
PaxDb:O76512 GeneID:171696 KEGG:cel:CELE_Y48G8AL.6 UCSC:Y48G8AL.6
CTD:171696 WormBase:Y48G8AL.6 InParanoid:O76512 NextBio:872341
Uniprot:O76512
Length = 1069
Score = 379 (138.5 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
Identities = 113/373 (30%), Positives = 182/373 (48%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVI 370
L +L+ EL + L+ + + L A + T SS+ + L I
Sbjct: 551 LIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVICCTCSSAADARLSKIRTRTVL-I 609
Query: 371 DEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYS 430
DE+ Q E E + + + G++ VL GD CQL +V K + A +SLFERL LG
Sbjct: 610 DESTQATEPEILVSI-MRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLLGIR 668
Query: 431 KHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR 490
L +QYRMHP +S FP++ FY+ +++ T R H P +F G
Sbjct: 669 PFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFWHCSGS 728
Query: 491 EEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSK- 547
EE S N E + V K++ L KA + + IG+++ Y Q I + ++
Sbjct: 729 EELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQ---IGVITSYEGQRSFIVNYMHTQG 785
Query: 548 YVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLW 606
+NS + V++ S+D FQG E+D II++ VRSN+ IGFLS+ +R+NVA+TRA++ L
Sbjct: 786 TLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLV 845
Query: 607 ILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAILAVKKXXXXXXXXXNPESR 666
++GNA+ L R +W L++ +++ + + L LA+ K +
Sbjct: 846 LVGNAKVLARH-DLWHELINHYKSKEMLYEGPINA-LKPLNLALPKATIRTKNNIAGNAN 903
Query: 667 LFRSQRWKVNFSE 679
F +R + F+E
Sbjct: 904 RFGIKRMQYTFNE 916
Score = 116 (45.9 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
Identities = 38/110 (34%), Positives = 55/110 (50%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPT 86
LN SQ QAV L + + LI GPPGTGKT + ++ L+Q + LVC+P+
Sbjct: 446 LNSSQMQAVKQVLTR-------PLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPS 498
Query: 87 NVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKVDSGVE 136
N+A+ LA ++ K + V R C + + L +LKV G E
Sbjct: 499 NIAVDHLAEKIHKTGLKVV-RLCARSREHSETTVPYLTLQHQLKVMGGAE 547
>UNIPROTKB|F1S0U6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
KO:K10706 GeneTree:ENSGT00580000081652 CTD:23064 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:CU550727 EMBL:CU914573
RefSeq:XP_003353743.1 UniGene:Ssc.45527 Ensembl:ENSSSCT00000006294
GeneID:100511239 KEGG:ssc:100511239 Uniprot:F1S0U6
Length = 2661
Score = 341 (125.1 bits), Expect = 5.1e-32, Sum P(2) = 5.1e-32
Identities = 96/288 (33%), Positives = 151/288 (52%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFER 423
P + +++DEA Q E E+ PL + VL GD QLP V S + + + +S+ R
Sbjct: 2168 PFSCVIVDEAGQSCEVETLTPL-IHRCNKLVLVGDPKQLPPTVISMKAQDYGYDQSMMAR 2226
Query: 424 L----------SYLGYSKHL-LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
+ +G L L++QYRMHP I FP++Y Y ++ +S +
Sbjct: 2227 FYKLLEENVEHNVIGRLPILQLTVQYRMHPDICLFPSNYIYNRNLKTNSLTEASRCSSDW 2286
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
P + PY +V G E S N+ E+ +VM+I+ L K +IGI++
Sbjct: 2287 ---P-FQPYLVFDVGDGSERRDNDSYVNVQEIKLVMEII-KLIKDKRRDVTFRNIGIITH 2341
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNG-GSIGFLSNS 591
Y AQ IQ+ L ++ + G A +V ++DGFQG ++D +I++ VR+ GSIGFL++
Sbjct: 2342 YKAQKTLIQKDLDKEF-DRKGPA-EVDTVDGFQGRQKDCVIVTCVRAKTSQGSIGFLASL 2399
Query: 592 KRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADD 639
+R+NV +TRA++ L+ILG+ RTL R+ W L+ DA R D
Sbjct: 2400 QRLNVTITRAKYSLFILGHLRTL-RENDHWNQLIEDAQKRGAIIKTCD 2446
Score = 111 (44.1 bits), Expect = 5.1e-32, Sum P(2) = 5.1e-32
Identities = 43/133 (32%), Positives = 63/133 (47%)
Query: 29 NDSQAQAVLSCLRQMRCDHK-ATIQLIWGPPGTGKTKTVSMLLVILL------------- 74
N+ Q +A+ + ++ A I LI GPPGTGK+KT+ LL LL
Sbjct: 1929 NEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRRGHSDENS 1988
Query: 75 QMKF---RTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV 131
K R LVC P+N A+ EL +++ KE +D R+ L GDI L+ +
Sbjct: 1989 NAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKC-KDKRNPLG-NCGDINLVRLGPEKSI 2046
Query: 132 DSGVEEIYLDYRV 144
++ V LD +V
Sbjct: 2047 NNEVLRFSLDSQV 2059
Score = 48 (22.0 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 3 ETCELCSMQSEG---VWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQ 52
E +LCS EG + G DS+++ L L +C +K ++
Sbjct: 1498 EDMDLCSQMEEGNAQLIEVVHGKDTVQVEEDSRSRPQLESLSSAKCKYKDCVE 1550
Score = 40 (19.1 bits), Expect = 3.7e-23, Sum P(3) = 3.7e-23
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 173 SLYHTYIDNESMKQSEDINGDIIKEKECGKEADV 206
SL + +D++ +Q N + K+K+ KE ++
Sbjct: 840 SLSNGILDDKHGEQKSQDNSSLPKKKQIKKEEEL 873
Score = 38 (18.4 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 288 GLSKSIVGIKY-LLHKRRSECH 308
G SK+IVG+ Y LL + + H
Sbjct: 1962 GKSKTIVGLLYRLLTENQRRGH 1983
>UNIPROTKB|Q7Z333 [details] [associations]
symbol:SETX "Probable helicase senataxin" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0007623 "circadian
rhythm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IC] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR026121 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008219 GO:GO:0006396 GO:GO:0006302 Orphanet:803
eggNOG:COG1112 GO:GO:0003678 KO:K10706 EMBL:AL159997 Orphanet:64753
EMBL:AY362728 EMBL:BX537849 EMBL:BX538166 EMBL:CR749249
EMBL:AL353701 EMBL:BC032600 EMBL:BC032622 EMBL:BC078166
EMBL:BC106017 EMBL:BC137350 EMBL:AB014525 EMBL:AK001456
EMBL:AK022902 IPI:IPI00142538 IPI:IPI00646645 IPI:IPI00719643
RefSeq:NP_055861.3 UniGene:Hs.460317 ProteinModelPortal:Q7Z333
SMR:Q7Z333 IntAct:Q7Z333 STRING:Q7Z333 PhosphoSite:Q7Z333
DMDM:296453021 PaxDb:Q7Z333 PRIDE:Q7Z333 Ensembl:ENST00000224140
Ensembl:ENST00000372169 Ensembl:ENST00000393220
Ensembl:ENST00000436441 GeneID:23064 KEGG:hsa:23064 UCSC:uc004cbj.3
UCSC:uc004cbk.3 UCSC:uc010mzt.3 CTD:23064 GeneCards:GC09M135136
HGNC:HGNC:445 HPA:HPA024105 MIM:602433 MIM:606002 MIM:608465
neXtProt:NX_Q7Z333 PharmGKB:PA24751 HOVERGEN:HBG108476
InParanoid:Q7Z333 OMA:RLINHFE OrthoDB:EOG4XWFWX PhylomeDB:Q7Z333
ChiTaRS:SETX GenomeRNAi:23064 NextBio:44145 ArrayExpress:Q7Z333
Bgee:Q7Z333 Genevestigator:Q7Z333 GermOnline:ENSG00000107290
PANTHER:PTHR10887:SF15 Uniprot:Q7Z333
Length = 2677
Score = 338 (124.0 bits), Expect = 5.3e-32, Sum P(2) = 5.3e-32
Identities = 99/303 (32%), Positives = 159/303 (52%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFER 423
P + +++DEA Q E E+ PL + +L GD QLP V S + E + +S+ R
Sbjct: 2174 PFSCVIVDEAGQSCEIETLTPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2232
Query: 424 LSYL---GYSKHLLS--------IQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
L +++S +QYRMHP I FP++Y Y ++ T R+ +
Sbjct: 2233 FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLK---TNRQTEAIRCS 2289
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS---IGI 529
P + PY +V G E S N+ E+ +VM+I+ L K D ++ +S IGI
Sbjct: 2290 SDWP-FQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIK---DKRKDVSFRNIGI 2344
Query: 530 VSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN-GGSIGFL 588
++ Y AQ IQ+ L ++ + G A +V ++D FQG ++D +I++ VR+N+ GSIGFL
Sbjct: 2345 ITHYKAQKTMIQKDLDKEF-DRKGPA-EVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFL 2402
Query: 589 SNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAIL 648
++ +R+NV +TRA++ L+ILG+ RTL + W L+ DA R D A+
Sbjct: 2403 ASLQRLNVTITRAKYSLFILGHLRTLMENQH-WNQLIQDAQKRGAIIKTCDKNYRHDAVK 2461
Query: 649 AVK 651
+K
Sbjct: 2462 ILK 2464
Score = 114 (45.2 bits), Expect = 5.3e-32, Sum P(2) = 5.3e-32
Identities = 44/133 (33%), Positives = 65/133 (48%)
Query: 29 NDSQAQAVLSCLRQMRCDHK-ATIQLIWGPPGTGKTKTVSMLLVILL---QMKF------ 78
N+ Q +A+ + ++ A I LI GPPGTGK+KT+ LL LL Q K
Sbjct: 1935 NEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENS 1994
Query: 79 -------RTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV 131
R LVC P+N A+ EL +++ KE +D ++ L GDI L+ +
Sbjct: 1995 NAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKC-KDKKNPLG-NCGDINLVRLGPEKSI 2052
Query: 132 DSGVEEIYLDYRV 144
+S V + LD +V
Sbjct: 2053 NSEVLKFSLDSQV 2065
Score = 39 (18.8 bits), Expect = 9.9e-23, Sum P(3) = 9.9e-23
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 288 GLSKSIVGIKY-LLHKRRSECH 308
G SK+IVG+ Y LL + + + H
Sbjct: 1968 GKSKTIVGLLYRLLTENQRKGH 1989
Score = 38 (18.4 bits), Expect = 9.9e-23, Sum P(3) = 9.9e-23
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 180 DNESMKQSEDINGDIIKEKEC 200
D+ S Q E ++G K K+C
Sbjct: 1534 DSVSRPQLESLSGTKCKYKDC 1554
>UNIPROTKB|F1PHA4 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006302 "double-strand break repair"
evidence=IEA] InterPro:IPR026121 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:AAEX03006816 EMBL:AAEX03006817 Ensembl:ENSCAFT00000031656
Uniprot:F1PHA4
Length = 2531
Score = 339 (124.4 bits), Expect = 7.5e-32, Sum P(2) = 7.5e-32
Identities = 97/288 (33%), Positives = 152/288 (52%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFER 423
P + +++DEA Q E E+ PL + +L GD QLP V S + E + +S+ R
Sbjct: 2197 PFSCVIVDEAGQSCEVETLTPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2255
Query: 424 L----------SYLGYSKHL-LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
+ +G L L++QYRMHP I FP++Y Y ++ T R+ +
Sbjct: 2256 FYKLLEDNVEHNMIGRLPVLQLTVQYRMHPDICLFPSNYVYNRSLK---TNRQTETNRCS 2312
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
P + PY +V G E S N+ E+ +VM+I+ L K +IGI++
Sbjct: 2313 SDWP-FQPYLVFDVGDGSERRDNDSYVNVQEIKLVMEII-KLIKDKRRDVTFRNIGIITH 2370
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN-GGSIGFLSNS 591
Y AQ IQ+ L ++ + G A +V ++DGFQG ++D +I++ VR+N GSIGFL++
Sbjct: 2371 YKAQKTMIQKDLDKEF-DRKGPA-EVDTVDGFQGRQKDCVIVTCVRANAMQGSIGFLASL 2428
Query: 592 KRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADD 639
+R+NV +TRA++ L+ILG+ RTL + W L+ DA R D
Sbjct: 2429 QRLNVTITRAKYSLFILGHLRTLMENQH-WNHLIQDAQKRGAIIKTCD 2475
Score = 111 (44.1 bits), Expect = 7.5e-32, Sum P(2) = 7.5e-32
Identities = 43/133 (32%), Positives = 65/133 (48%)
Query: 29 NDSQAQAVLSCLRQMRCDHK-ATIQLIWGPPGTGKTKTVSMLLVILL---QMKF------ 78
N+ Q +A+ + ++ A I LI GPPGTGK+KT+ LL LL Q K
Sbjct: 1958 NEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENS 2017
Query: 79 -------RTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV 131
R LVC P+N A+ EL +++ KE +D ++ L GDI L+ +
Sbjct: 2018 NAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKC-KDKKNPLG-NCGDINLVRLGPEKSI 2075
Query: 132 DSGVEEIYLDYRV 144
++ V + LD +V
Sbjct: 2076 NNEVLKFSLDSQV 2088
Score = 51 (23.0 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 310 VLRKLQSSFNELNLPSAVEKDL-LEDLLKSFCLKRASLFLST 350
+L K ++ E N + + KDL LEDL C+K++S L T
Sbjct: 668 ILIKASNTIEEDNEQNYI-KDLKLEDLSAESCIKQSSKSLFT 708
Score = 39 (18.8 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 288 GLSKSIVGIKY-LLHKRRSECH 308
G SK+IVG+ Y LL + + + H
Sbjct: 1991 GKSKTIVGLLYRLLTENQRKGH 2012
>UNIPROTKB|E1BAS6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:DAAA02032276 EMBL:DAAA02032274 EMBL:DAAA02032275
IPI:IPI00842535 Ensembl:ENSBTAT00000042924 Uniprot:E1BAS6
Length = 2662
Score = 340 (124.7 bits), Expect = 8.4e-32, Sum P(2) = 8.4e-32
Identities = 100/288 (34%), Positives = 153/288 (53%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL--- 420
P + +++DEA Q E E+ PL + VL GD QLP V S + + + +S+
Sbjct: 2164 PFSCVIVDEAGQSCEVETLTPL-IHRCNKLVLVGDPKQLPPTVISVKAQDYGYDQSMMAR 2222
Query: 421 FERL-------SYLGYSKHL-LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
F +L + +G L L+IQYRMHP I FP+SY Y+ +R T R +
Sbjct: 2223 FHKLLEESVEHNMIGRLPVLQLTIQYRMHPDICLFPSSYIYDGILR---TNRGTETSRCS 2279
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
P + PY +V G E S N+ E+ +VM+ L+ L K +IGI++
Sbjct: 2280 SDWP-FQPYLVFDVGDGLERRDNDSYVNVQEIKLVME-LIKLIKDKRRDVTFRNIGIITH 2337
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSN-NGGSIGFLSNS 591
Y AQ IQ+ L ++ + G A +V ++D FQG ++D +I++ VR+N GSIGFL++
Sbjct: 2338 YKAQKTMIQKDLDKEF-DRKG-AAEVDTVDAFQGRQKDCVIVTCVRANATQGSIGFLASL 2395
Query: 592 KRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADD 639
+R+NV +TRA++ L+ILG+ RTL + W L+ DA R D
Sbjct: 2396 QRLNVTITRAKYSLFILGHLRTLVENRH-WYHLIQDAQKRGAIIKTCD 2442
Score = 110 (43.8 bits), Expect = 8.4e-32, Sum P(2) = 8.4e-32
Identities = 41/133 (30%), Positives = 63/133 (47%)
Query: 29 NDSQAQAV-LSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL------------- 74
N+ Q +A+ +C A I LI GPPGTGK+KT+ +L LL
Sbjct: 1925 NEDQKKAIETACAMVKHSPSVAKICLIHGPPGTGKSKTIVGILYRLLTENQRRGYSDENS 1984
Query: 75 QMKF---RTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV 131
K R LVC P+N A+ EL +++ KE +D ++ + GDI L+ +
Sbjct: 1985 NAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKC-KDKKNPMG-NCGDINLVRLGPEKSI 2042
Query: 132 DSGVEEIYLDYRV 144
++ V + LD +V
Sbjct: 2043 NNEVLKFSLDSQV 2055
Score = 39 (18.8 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 288 GLSKSIVGIKYLL 300
G SK+IVGI Y L
Sbjct: 1958 GKSKTIVGILYRL 1970
>MGI|MGI:2443480 [details] [associations]
symbol:Setx "senataxin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR026121 MGI:MGI:2443480 GO:GO:0005524 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0007623 GO:GO:0006302
GO:GO:0004386 eggNOG:COG1112 GO:GO:0006369 KO:K10706 EMBL:AL772379
GeneTree:ENSGT00580000081652 CTD:23064 HOVERGEN:HBG108476
OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15 EMBL:AL845267
EMBL:AK044730 EMBL:AK048354 EMBL:AK077911 EMBL:BC046382
EMBL:BC058109 EMBL:BC079604 EMBL:AK129177 EMBL:BK001523
IPI:IPI00421108 IPI:IPI00626271 RefSeq:NP_932150.2 UniGene:Mm.41867
ProteinModelPortal:A2AKX3 SMR:A2AKX3 DIP:DIP-56995N IntAct:A2AKX3
STRING:A2AKX3 PhosphoSite:A2AKX3 PaxDb:A2AKX3 PRIDE:A2AKX3
Ensembl:ENSMUST00000061578 Ensembl:ENSMUST00000129544 GeneID:269254
KEGG:mmu:269254 UCSC:uc008izm.1 InParanoid:A2AKX3 NextBio:392760
Bgee:A2AKX3 CleanEx:MM_SETX Genevestigator:A2AKX3 Uniprot:A2AKX3
Length = 2646
Score = 330 (121.2 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 102/339 (30%), Positives = 166/339 (48%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFER 423
P + +++DEA Q E E+ PL + +L GD QLP V S + E + +S+ R
Sbjct: 2150 PFSCVIVDEAGQSCEVETLSPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2208
Query: 424 LSYL---GYSKHL--------LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
L +++ L+IQYRMHP I FP++Y Y ++ + +
Sbjct: 2209 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESIRCSSEW 2268
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
P + PY +V G E S N+ E+ +VM+I+ + + D + +IGI++
Sbjct: 2269 ---P-FQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIKLIKEKRKDISFR-NIGIITH 2323
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN-GGSIGFLSNS 591
Y AQ IQ+ L ++ + G A +V ++D FQG ++D II++ VR++ GSIGFL++
Sbjct: 2324 YKAQKTMIQKDLEKEF-DKKGPA-EVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASL 2381
Query: 592 KRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAILAVK 651
+R+NV +TRA++ L+ILG+ RTL + W L+ DA R D A+ +K
Sbjct: 2382 QRLNVTITRAKYSLFILGHLRTLMENQH-WYELIQDAQKRGAIIKTSDPNYRHDAMKILK 2440
Query: 652 KXXXXXXXXXNPESRLFRSQRWKVNFSENFLKSFRKLTS 690
+P + + R + N L S TS
Sbjct: 2441 LKPVLQRSLTHPPATAPEAPRPQGGLPSNRLDSGLATTS 2479
Score = 113 (44.8 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 44/133 (33%), Positives = 66/133 (49%)
Query: 29 NDSQAQAVLSCLRQMRCDHK-ATIQLIWGPPGTGKTKTVSMLLVILL---QMK------F 78
N+ Q +A+ + ++ A I LI GPPGTGK+KT+ LL LL Q K F
Sbjct: 1911 NEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENF 1970
Query: 79 -------RTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV 131
R LVC P+N A+ EL +++ KE +D ++ L GDI L+ +
Sbjct: 1971 NAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKC-KDKKNPLG-NCGDINLVRLGPEKSI 2028
Query: 132 DSGVEEIYLDYRV 144
++ V + LD +V
Sbjct: 2029 NTEVLKFSLDSQV 2041
Score = 39 (18.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 288 GLSKSIVGIKY-LLHKRRSECH 308
G SK+IVG+ Y LL + + + H
Sbjct: 1944 GKSKTIVGLLYRLLTENQRKGH 1965
>UNIPROTKB|D4AEB3 [details] [associations]
symbol:Setx "Protein Setx" species:10116 "Rattus
norvegicus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 RGD:1565575 GO:GO:0005737
GO:GO:0005654 GO:GO:0006302 KO:K10706 GeneTree:ENSGT00580000081652
CTD:23064 OMA:RLINHFE OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15
IPI:IPI00476851 RefSeq:XP_342401.3 ProteinModelPortal:D4AEB3
PRIDE:D4AEB3 Ensembl:ENSRNOT00000017984 GeneID:362096
KEGG:rno:362096 NextBio:678646 ArrayExpress:D4AEB3 Uniprot:D4AEB3
Length = 2647
Score = 329 (120.9 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 103/339 (30%), Positives = 167/339 (49%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFER 423
P + +++DEA Q E E+ PL + VL GD QLP V S + E + +S+ R
Sbjct: 2151 PFSCVIVDEAGQSCEVETLSPL-IHRCNKLVLVGDPKQLPPTVISMKAQEYGYDQSMMAR 2209
Query: 424 LSYL---GYSKHL--------LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
L +++ L+IQYRMHP I FP++Y Y ++ + +
Sbjct: 2210 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTETIRCSSEW 2269
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
P + PY +V G E+ S N+ E+ +VM+I+ + + D + +IGI++
Sbjct: 2270 ---P-FQPYLVFDVGDGSEQRDNDSYINVQEIKLVMEIIKLIKEKRKDISFR-NIGIITH 2324
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN-GGSIGFLSNS 591
Y AQ IQ+ L ++ + G A +V ++D FQG ++D II++ VR++ GSIGFL++
Sbjct: 2325 YKAQKTMIQKDLEKEF-DKKGPA-EVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASL 2382
Query: 592 KRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAILAVK 651
+R+NV +TRA++ L+ILG+ RTL + W L+ DA R D A+ +K
Sbjct: 2383 QRLNVTITRAKYSLFILGHLRTLMENQH-WYELIQDAQKRGAIIKTCDPNYRHDAMKILK 2441
Query: 652 KXXXXXXXXXNPESRLFRSQRWKVNFSENFLKSFRKLTS 690
+P + + R + N L S TS
Sbjct: 2442 LKPVLQRSLTHPPATAPEAPRPQGGLPSNRLDSGLATTS 2480
Score = 113 (44.8 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 44/133 (33%), Positives = 66/133 (49%)
Query: 29 NDSQAQAVLSCLRQMRCDHK-ATIQLIWGPPGTGKTKTVSMLLVILL---QMK------F 78
N+ Q +A+ + ++ A I LI GPPGTGK+KT+ LL LL Q K F
Sbjct: 1912 NEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTESQRKGHSDENF 1971
Query: 79 -------RTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKV 131
R LVC P+N A+ EL +++ KE +D ++ L GDI L+ +
Sbjct: 1972 NAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKC-KDKKNPLG-NCGDINLVRLGPEKSI 2029
Query: 132 DSGVEEIYLDYRV 144
++ V + LD +V
Sbjct: 2030 NTEVLKFSLDSQV 2042
Score = 38 (18.4 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 288 GLSKSIVGIKY-LLHKRRSECH 308
G SK+IVG+ Y LL + + + H
Sbjct: 1945 GKSKTIVGLLYRLLTESQRKGH 1966
>FB|FBgn0035842 [details] [associations]
symbol:CG7504 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 GO:GO:0005875 EMBL:AE014296 GO:GO:0006200
GO:GO:0016887 Gene3D:2.60.200.20 SUPFAM:SSF49879 eggNOG:COG1112
KO:K10706 GeneTree:ENSGT00580000081652 RefSeq:NP_001137907.1
UniGene:Dm.31993 ProteinModelPortal:B7Z0D7 SMR:B7Z0D7 STRING:B7Z0D7
PaxDb:B7Z0D7 EnsemblMetazoa:FBtr0273367 GeneID:38904
KEGG:dme:Dmel_CG7504 FlyBase:FBgn0035842 OMA:NRSKSCY
OrthoDB:EOG4DV42G GenomeRNAi:38904 NextBio:810939 Bgee:B7Z0D7
Uniprot:B7Z0D7
Length = 1676
Score = 330 (121.2 bits), Expect = 3.9e-29, Sum P(2) = 3.9e-29
Identities = 107/349 (30%), Positives = 179/349 (51%)
Query: 312 RKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVID 371
+KLQ N+L+ P +++ E + C+ RA++ +T SS L + ++ + ++D
Sbjct: 1336 KKLQLISNQLS-PPLTQREEFE--ISHMCVTRANIICTTLSSCVKLANY-VDFFDICIVD 1391
Query: 372 EAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL-----SY 426
EA Q E + +P++ G+ H VL GD QLPA+V SK + + S+F+R+ +
Sbjct: 1392 EATQCTEPWTLLPMRF-GLTHMVLVGDMQQLPAVVLSKKAIDFGLSNSMFDRIQRSLQTQ 1450
Query: 427 LGY--SKHLLSIQ-YRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSF 483
L S HL+ + +++ P + N+ + RF P+ PY
Sbjct: 1451 LDKPGSYHLMHTKLFKLSTQYRMHPEICRWPNQYFYEDQLINAECTARFA-SPLI-PYCV 1508
Query: 484 INV-FGGREEFIEH-SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQ 541
IN+ + ++ S N E V K+L + K + SK + S G++SPY Q A+
Sbjct: 1509 INLKYTCDSNGAQNKSISNNEEARFVAKLLTEMDKH-MPSK-RFSYGLISPYQNQCYALS 1566
Query: 542 EKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
+ + S ++N + ++D +QG E+D+IIIS R+ GFL+N +R+NVALTR
Sbjct: 1567 QVIPS-HMN-----ITPQTVDSYQGLEKDVIIISNARTRG---CGFLTNYQRLNVALTRP 1617
Query: 602 RHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAD-DD-KDLGKAIL 648
R CL I GN L + +W L+ DA R+ +FN D DD DL ++++
Sbjct: 1618 RRCLVICGNFEDL-KSVEMWRNLLDDARKRKVYFNLDRDDVNDLDRSLI 1665
Score = 90 (36.7 bits), Expect = 3.9e-29, Sum P(2) = 3.9e-29
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ------MKFRTL 81
LN+ Q VL +++ D + ++ LI GPPGTGK++ +S L + L + + L
Sbjct: 1172 LNEHQENIVLHTYQRIIDDLQPSLTLIQGPPGTGKSRVISELCLQTLYGNAAKTLDRKIL 1231
Query: 82 VCTPTNVAIKELAARVVKLVKESVERD 108
+C +N A+ + + +++ + RD
Sbjct: 1232 ICAHSNTAVDHIVGLLGSVLRV-MNRD 1257
>UNIPROTKB|P38935 [details] [associations]
symbol:IGHMBP2 "DNA-binding protein SMUBP-2" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0006412
"translation" evidence=NAS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000049 "tRNA binding" evidence=IDA] [GO:0032797
"SMN complex" evidence=IDA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3'
DNA helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0030424 "axon" evidence=ISS] [GO:0030426 "growth
cone" evidence=ISS] [GO:0043022 "ribosome binding" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0006260 "DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006310 "DNA recombination" evidence=TAS] [GO:0051260 "protein
homooligomerization" evidence=IPI] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0006412
GO:GO:0006260 GO:GO:0008219 GO:GO:0030424 GO:GO:0008270
GO:GO:0006281 GO:GO:0051260 GO:GO:0006351 GO:GO:0043022
GO:GO:0000122 GO:GO:0030426 GO:GO:0006310 GO:GO:0003697
GO:GO:0030529 GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0043141 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Orphanet:98920 EMBL:AP000808 Gene3D:4.10.1110.10 GO:GO:0032575
EMBL:L14754 EMBL:L24544 EMBL:BC025299 EMBL:M64979 IPI:IPI00009379
PIR:A47500 RefSeq:NP_002171.2 UniGene:Hs.503048 PDB:1MSZ PDB:2LRR
PDB:4B3F PDB:4B3G PDBsum:1MSZ PDBsum:2LRR PDBsum:4B3F PDBsum:4B3G
ProteinModelPortal:P38935 SMR:P38935 IntAct:P38935 STRING:P38935
PhosphoSite:P38935 DMDM:229462778 PaxDb:P38935 PRIDE:P38935
Ensembl:ENST00000255078 GeneID:3508 KEGG:hsa:3508 UCSC:uc001ook.1
CTD:3508 GeneCards:GC11P068671 H-InvDB:HIX0009884
H-InvDB:HIX0171377 HGNC:HGNC:5542 MIM:600502 MIM:604320
neXtProt:NX_P38935 PharmGKB:PA29731 HOVERGEN:HBG077019
InParanoid:P38935 OMA:HARQRIS OrthoDB:EOG4GHZNJ PhylomeDB:P38935
EvolutionaryTrace:P38935 GenomeRNAi:3508 NextBio:13764
ArrayExpress:P38935 Bgee:P38935 CleanEx:HS_IGHMBP2
Genevestigator:P38935 GermOnline:ENSG00000132740
PANTHER:PTHR10887:SF23 Uniprot:P38935
Length = 993
Score = 287 (106.1 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 110/347 (31%), Positives = 174/347 (50%)
Query: 312 RKLQSSF-NELNLPSAVEKDLLED-LLKSFCLKRASLFLST---ASSSYMLHSVAMEPLN 366
++ +S+F NE+ L K+ E +L+S L A++ L+T AS+ L + +
Sbjct: 313 KREKSNFRNEIKLLRKELKEREEAAMLES--LTSANVVLATNTGASADGPLKLLPESYFD 370
Query: 367 FLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS- 425
+VIDE AQ E+ IPL L K +L GD QLP S + A SL ERL+
Sbjct: 371 VVVIDECAQALEASCWIPL-LKARK-CILAGDHKQLPPTTVSHKAALAGLSLSLMERLAE 428
Query: 426 -YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY----G- 479
Y L++QYRMH +I + + Y ++ S+V + R L G G
Sbjct: 429 EYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLL--RDLPGVAATEETGV 486
Query: 480 PYSFINVFG-GR---EEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSA 535
P ++ G G EE E S N EV +V + L A + +++ I +VSPY+
Sbjct: 487 PLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARD---IAVVSPYNL 543
Query: 536 QVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVN 595
QV +++ L ++ +++ S+DGFQG E++ +I+S VRSN G +GFL+ +R+N
Sbjct: 544 QVDLLRQSLVHRHPE-----LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRIN 598
Query: 596 VALTRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADD 639
VA+TRAR + ++ ++RT+ K++ E R F DD
Sbjct: 599 VAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDD 645
Score = 121 (47.7 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
++ L+ SQ +AVL L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 189 NTCLDTSQKEAVLFALSQKE------LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 242
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+N+A+ L R+ L K+ + R
Sbjct: 243 PSNIAVDNLVERLA-LCKQRILR 264
Score = 41 (19.5 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 87 NVAIKELAARVVKLVKESVERDCRDALF 114
N+++KEL +R V L+K V R L+
Sbjct: 34 NISLKELQSRGVCLLKLQVSSQ-RTGLY 60
>POMBASE|SPCC737.07c [details] [associations]
symbol:SPCC737.07c "DNA polymerase alpha-associated DNA
helicase A (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006273
"lagging strand elongation" evidence=ISO] [GO:0033203 "DNA helicase
A complex" evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISO] [GO:0043596 "nuclear replication
fork" evidence=IC] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISO] InterPro:IPR003593 SMART:SM00382
PomBase:SPCC737.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR eggNOG:COG1112 GO:GO:0006273
GO:GO:0043141 PIR:T41580 RefSeq:NP_588369.1
ProteinModelPortal:O94247 STRING:O94247 EnsemblFungi:SPCC737.07c.1
GeneID:2539412 KEGG:spo:SPCC737.07c HOGENOM:HOG000185831
OMA:ERTIFLE OrthoDB:EOG444PTN NextBio:20800576 GO:GO:0033203
Uniprot:O94247
Length = 660
Score = 307 (113.1 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 91/261 (34%), Positives = 139/261 (53%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL--S 425
++IDEA+Q E + IPL G+ +L GD QL V+SK S+FERL S
Sbjct: 386 VIIDEASQALEPQCWIPLL--GMNKVILAGDHMQLSPNVQSKRPYI-----SMFERLVKS 438
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSY-------EKRFLHGPMY 478
K L+IQYRMH IS FP+ FY++K+ + V+KR E P+Y
Sbjct: 439 QGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIY 498
Query: 479 -----GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPY 533
G Y + + F + S N E +V + L +A +++K+ I +V+PY
Sbjct: 499 FYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKD---IAVVTPY 555
Query: 534 SAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKR 593
+AQV I++ L K G V++ S+D QG E++ II S VRSN+ +GFL+ +R
Sbjct: 556 NAQVALIRQLLKEK-----GIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRR 610
Query: 594 VNVALTRARHCLWILGNARTL 614
+NVA+TR + L ++G++ T+
Sbjct: 611 LNVAITRPKRHLCVIGDSNTV 631
Score = 93 (37.8 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 51 IQLIWGPPGTGKTKT-VSMLLVILLQMKFRTLVCTPTNVAIKELAARV 97
+ LI GPPGTGKT T V ++ ++L+ K R LVC +N+A+ + R+
Sbjct: 227 LSLIHGPPGTGKTHTLVEIIQQLVLRNK-RILVCGASNLAVDNIVDRL 273
Score = 51 (23.0 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 122 LLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYIDN 181
L+ N+R+ V G + +D V RL+ P+ H + LD+ + + DN
Sbjct: 249 LVLRNKRILV-CGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTGDN 307
Query: 182 ESMKQ--SEDIN---GDIIKEKECGKE 203
+ + SEDI+ I K K G+E
Sbjct: 308 GDVIRGISEDIDVCLSKITKTKN-GRE 333
>TAIR|locus:2056896 [details] [associations]
symbol:AT2G03270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AC005313 EMBL:AC006284 HOGENOM:HOG000185831
TIGRFAMs:TIGR00376 UniGene:At.10455 UniGene:At.71239 EMBL:AY045820
EMBL:AY091361 IPI:IPI00521943 PIR:T02699 RefSeq:NP_565299.1
ProteinModelPortal:O81047 SMR:O81047 STRING:O81047 PaxDb:O81047
PRIDE:O81047 EnsemblPlants:AT2G03270.1 GeneID:814856
KEGG:ath:AT2G03270 TAIR:At2g03270 InParanoid:O81047 OMA:GHPSRVS
PhylomeDB:O81047 ProtClustDB:CLSN2687941 ArrayExpress:O81047
Genevestigator:O81047 Uniprot:O81047
Length = 639
Score = 299 (110.3 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 91/291 (31%), Positives = 147/291 (50%)
Query: 333 EDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKH 392
+ L S +K A + L+T + + + + + ++IDE AQ E I L L G +
Sbjct: 332 QQLAVSDVIKNADVILTTLTGA-LTRKLDNRTFDLVIIDEGAQALEVACWIAL-LKGSR- 388
Query: 393 AVLFGDECQLPAMVESKVSNEACFGRSLFERLS--YLGYSKHLLSIQYRMHPSISCFPNS 450
+L GD QLP ++S + GR+LFERL+ Y K +L++QYRMH I + +
Sbjct: 389 CILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGDEIKSMLTVQYRMHELIMNWSSK 448
Query: 451 YFYENKIRDSSTVRKR---SYEKRFLHGPMYGPYSFINVFG-GREEFI--EHSCRNMVEV 504
Y+NKI S+V E ++ G EE E S N E
Sbjct: 449 ELYDNKITAHSSVASHMLFDLENVTKSSSTEATLLLVDTAGCDMEEKKDEEESTYNEGEA 508
Query: 505 SVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
V M L ++ + + IGI++PY+AQV+ ++ G + +++ ++DGF
Sbjct: 509 EVAMAHAKRLMESGVQPSD---IGIITPYAAQVMLLRILRGKEEKLKD---MEISTVDGF 562
Query: 565 QGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLT 615
QG E++ IIIS VRSN+ +GFL + +R+NVA+TR+R I+ + T++
Sbjct: 563 QGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTETVS 613
Score = 97 (39.2 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 38/137 (27%), Positives = 63/137 (45%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK 77
++F P + L+ SQ A+ L + L+ GPPGTGKT TV +++ ++
Sbjct: 181 KSFTP-FNKNLDQSQKDAITKALSSK------DVFLLHGPPGTGKTTTVVEIVLQEVKRG 233
Query: 78 FRTLVCTPTNVAIKELAARVV----KLVKES-VERDCRDALFFPLGDILLLGNNERLKVD 132
+ L C +N+A+ + R+V KLV+ R L L +L G+N L D
Sbjct: 234 SKILACAASNIAVDNIVERLVPHKVKLVRVGHPARLLPQVLDSALDAQVLKGDNSGLAND 293
Query: 133 SGVEEIYLDYRVKRLAD 149
E L+ ++ + D
Sbjct: 294 IRKEMKALNGKLLKAKD 310
Score = 38 (18.4 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 181 NESMKQSEDINGDIIKEKE 199
N+ K+ + +NG ++K K+
Sbjct: 292 NDIRKEMKALNGKLLKAKD 310
>RGD|68325 [details] [associations]
symbol:Ighmbp2 "immunoglobulin mu binding protein 2" species:10116
"Rattus norvegicus" [GO:0000049 "tRNA binding" evidence=IEA;ISO;ISS]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0001078 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in negative regulation of
transcription" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;ISO;IDA] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008134 "transcription factor binding"
evidence=IEA;ISO] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation" evidence=ISO]
[GO:0030424 "axon" evidence=IEA;ISO] [GO:0030426 "growth cone"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO] [GO:0032575 "ATP-dependent 5'-3' RNA helicase
activity" evidence=IEA;ISO;ISS] [GO:0032797 "SMN complex"
evidence=IEA;ISO] [GO:0043022 "ribosome binding"
evidence=IEA;ISO;ISS] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA;ISO;ISS] [GO:0043621 "protein self-association"
evidence=ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] [GO:0051260 "protein homooligomerization"
evidence=IEA;ISO] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 RGD:68325 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0030424 GO:GO:0001078 GO:GO:0008270 GO:GO:0051260
GO:GO:0043621 GO:GO:0043022 GO:GO:0030529 GO:GO:0000049
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GO:GO:0032797 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OrthoDB:EOG4GHZNJ
PANTHER:PTHR10887:SF23 EMBL:AF199411 IPI:IPI00190206
RefSeq:NP_113774.1 UniGene:Rn.23984 HSSP:P38935
ProteinModelPortal:Q9EQN5 SMR:Q9EQN5 STRING:Q9EQN5 PRIDE:Q9EQN5
GeneID:29532 KEGG:rno:29532 UCSC:RGD:68325 InParanoid:Q9EQN5
NextBio:609508 ArrayExpress:Q9EQN5 Genevestigator:Q9EQN5
Uniprot:Q9EQN5
Length = 988
Score = 278 (102.9 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 98/344 (28%), Positives = 172/344 (50%)
Query: 312 RKLQSSF-NELNLPSAVEKDLLEDLLKSFCLKRASLFLST---ASSSYMLHSVAMEPLNF 367
++ +S+F NE+ L K+ E + L A + L+T AS+ L + + +
Sbjct: 312 KREKSNFRNEIKLLRKELKEREEAAIVQ-SLSAADVVLATNTGASTDGPLKLLPEDYFDV 370
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
+V+DE AQ E+ IPL L K +L GD QLP S + A RSL ERL+
Sbjct: 371 VVVDECAQALEASCWIPL-LKAPK-CILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEK 428
Query: 428 -GYSK-HLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG-----PMYGP 480
G + +L++QYRMH +I+ + + Y ++ +V + + L G P
Sbjct: 429 HGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVA--GHLLKDLPGVADTEETSVP 486
Query: 481 YSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQVV 538
I+ G G E E ++ V + L++ +A +D+ + I +++PY+ QV
Sbjct: 487 LLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHI-QALVDAGVQAGDIAVIAPYNLQVD 545
Query: 539 AIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVAL 598
+++ L +K+ +++ S+DGFQG E++ +I++ VRSN G +GFL+ +R+NVA+
Sbjct: 546 LLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAV 600
Query: 599 TRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADD 639
TRAR + ++ ++ T+ K++ + R F DD
Sbjct: 601 TRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
Score = 122 (48.0 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
++TL+ SQ +AV L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 188 NTTLDPSQKEAVSFALAQKE------VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 241
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+N+A+ L R+ L K+ + R
Sbjct: 242 PSNIAVDNLVERLA-LCKKQILR 263
>UNIPROTKB|Q9EQN5 [details] [associations]
symbol:Ighmbp2 "DNA-binding protein SMUBP-2" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154 SMART:SM00382
SMART:SM00393 RGD:68325 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0030424 GO:GO:0001078
GO:GO:0008270 GO:GO:0051260 GO:GO:0043621 GO:GO:0043022
GO:GO:0030529 GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0043141 GO:GO:0032797 HOGENOM:HOG000185831
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508
OrthoDB:EOG4GHZNJ PANTHER:PTHR10887:SF23 EMBL:AF199411
IPI:IPI00190206 RefSeq:NP_113774.1 UniGene:Rn.23984 HSSP:P38935
ProteinModelPortal:Q9EQN5 SMR:Q9EQN5 STRING:Q9EQN5 PRIDE:Q9EQN5
GeneID:29532 KEGG:rno:29532 UCSC:RGD:68325 InParanoid:Q9EQN5
NextBio:609508 ArrayExpress:Q9EQN5 Genevestigator:Q9EQN5
Uniprot:Q9EQN5
Length = 988
Score = 278 (102.9 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 98/344 (28%), Positives = 172/344 (50%)
Query: 312 RKLQSSF-NELNLPSAVEKDLLEDLLKSFCLKRASLFLST---ASSSYMLHSVAMEPLNF 367
++ +S+F NE+ L K+ E + L A + L+T AS+ L + + +
Sbjct: 312 KREKSNFRNEIKLLRKELKEREEAAIVQ-SLSAADVVLATNTGASTDGPLKLLPEDYFDV 370
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
+V+DE AQ E+ IPL L K +L GD QLP S + A RSL ERL+
Sbjct: 371 VVVDECAQALEASCWIPL-LKAPK-CILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEK 428
Query: 428 -GYSK-HLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG-----PMYGP 480
G + +L++QYRMH +I+ + + Y ++ +V + + L G P
Sbjct: 429 HGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVA--GHLLKDLPGVADTEETSVP 486
Query: 481 YSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQVV 538
I+ G G E E ++ V + L++ +A +D+ + I +++PY+ QV
Sbjct: 487 LLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHI-QALVDAGVQAGDIAVIAPYNLQVD 545
Query: 539 AIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVAL 598
+++ L +K+ +++ S+DGFQG E++ +I++ VRSN G +GFL+ +R+NVA+
Sbjct: 546 LLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAV 600
Query: 599 TRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADD 639
TRAR + ++ ++ T+ K++ + R F DD
Sbjct: 601 TRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
Score = 122 (48.0 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
++TL+ SQ +AV L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 188 NTTLDPSQKEAVSFALAQKE------VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 241
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+N+A+ L R+ L K+ + R
Sbjct: 242 PSNIAVDNLVERLA-LCKKQILR 263
>GENEDB_PFALCIPARUM|MAL7P1.12 [details] [associations]
symbol:MAL7P1.12 "erythrocyte
membrane-associated antigen" species:5833 "Plasmodium falciparum"
[GO:0016020 "membrane" evidence=ISS] GO:GO:0016020
InterPro:IPR014001 SMART:SM00487 EMBL:AL844506
RefSeq:XP_001348968.1 ProteinModelPortal:Q8IC35 IntAct:Q8IC35
MINT:MINT-1611439 EnsemblProtists:MAL7P1.12:mRNA GeneID:2655186
KEGG:pfa:MAL7P1.12 EuPathDB:PlasmoDB:PF3D7_0703500
HOGENOM:HOG000283891 ProtClustDB:CLSZ2433351 Uniprot:Q8IC35
Length = 2283
Score = 333 (122.3 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 97/302 (32%), Positives = 158/302 (52%)
Query: 328 EKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVA-MEPLNFLVIDEAAQLKESESTIPLQ 386
E +++ LL +K+ ++ ++T S H + E ++IDE AQ E + IPL
Sbjct: 1884 EAKVMKALLFLEAVKKYNVVIATCVGSG--HEIFDNEKFERVIIDECAQSIEPSNLIPLG 1941
Query: 387 LSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSK-HLLSIQYRMHPSIS 445
+ VL GD QLP + S + + +SL ER + HLL+ Q RMH SI
Sbjct: 1942 -HYCNNLVLIGDHKQLPPTIISPDAIKLGLDKSLLERFVMAKIAPVHLLNTQRRMHLSIC 2000
Query: 446 CFPNSYFYENKIRDSS-TVRKRSYEKRFLHGPMYGPYSFINVFGGR-----EEFIEHSCR 499
FPN +FY+NK++ ++ T R K FL +FI+V G+ E S
Sbjct: 2001 VFPNFHFYDNKLKTANVTEENRPIIKGFLWPNPKCRLAFIDVSIGKPGSKFENAYGTSKF 2060
Query: 500 NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVM 559
N+ E+ ++ +L ++ S ++ IGI++ Y AQ + +++ + + A +++
Sbjct: 2061 NLYEIEPLITVLKSIINEGCVSVDE--IGILTAYDAQKMKLKKAVQDAFSYEASHRIEID 2118
Query: 560 SIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKS 619
SIDGFQG E+DLI+ S VRSN +GFL +++R+NV LTRA+ + + G+ TL +
Sbjct: 2119 SIDGFQGKEKDLILFSAVRSNANNELGFLRDARRLNVMLTRAKRGVILFGDQFTLANDPA 2178
Query: 620 VW 621
W
Sbjct: 2179 NW 2180
Score = 74 (31.1 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 38/143 (26%), Positives = 58/143 (40%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF--RTLVCTP 85
LNDSQ A LS L + + L+ GPPGTGKT ++ + + L
Sbjct: 1777 LNDSQKLACLSALTRR-------LTLVQGPPGTGKTHVACAIIDSWHKQNSNKKILAVAD 1829
Query: 86 TNVA----IKELAARVVKLVKESVERDC---RDAL--FFPLGDILLLGNNERLKVDSGVE 136
+NVA ++ L R ++ V+ D +A+ F D+L L N K ++
Sbjct: 1830 SNVAANNLVEGLKKRNIQAVRVGAGSDSDFHEEAIMEFHRYKDLLKLRKNNMQKEAKVMK 1889
Query: 137 EIYLDYRVKRLADCFAPLTGWSH 159
+ VK+ A G H
Sbjct: 1890 ALLFLEAVKKYNVVIATCVGSGH 1912
>UNIPROTKB|Q8IC35 [details] [associations]
symbol:MAL7P1.12 "Erythrocyte membrane-associated antigen"
species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
evidence=ISS] GO:GO:0016020 InterPro:IPR014001 SMART:SM00487
EMBL:AL844506 RefSeq:XP_001348968.1 ProteinModelPortal:Q8IC35
IntAct:Q8IC35 MINT:MINT-1611439 EnsemblProtists:MAL7P1.12:mRNA
GeneID:2655186 KEGG:pfa:MAL7P1.12 EuPathDB:PlasmoDB:PF3D7_0703500
HOGENOM:HOG000283891 ProtClustDB:CLSZ2433351 Uniprot:Q8IC35
Length = 2283
Score = 333 (122.3 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 97/302 (32%), Positives = 158/302 (52%)
Query: 328 EKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVA-MEPLNFLVIDEAAQLKESESTIPLQ 386
E +++ LL +K+ ++ ++T S H + E ++IDE AQ E + IPL
Sbjct: 1884 EAKVMKALLFLEAVKKYNVVIATCVGSG--HEIFDNEKFERVIIDECAQSIEPSNLIPLG 1941
Query: 387 LSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSK-HLLSIQYRMHPSIS 445
+ VL GD QLP + S + + +SL ER + HLL+ Q RMH SI
Sbjct: 1942 -HYCNNLVLIGDHKQLPPTIISPDAIKLGLDKSLLERFVMAKIAPVHLLNTQRRMHLSIC 2000
Query: 446 CFPNSYFYENKIRDSS-TVRKRSYEKRFLHGPMYGPYSFINVFGGR-----EEFIEHSCR 499
FPN +FY+NK++ ++ T R K FL +FI+V G+ E S
Sbjct: 2001 VFPNFHFYDNKLKTANVTEENRPIIKGFLWPNPKCRLAFIDVSIGKPGSKFENAYGTSKF 2060
Query: 500 NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVM 559
N+ E+ ++ +L ++ S ++ IGI++ Y AQ + +++ + + A +++
Sbjct: 2061 NLYEIEPLITVLKSIINEGCVSVDE--IGILTAYDAQKMKLKKAVQDAFSYEASHRIEID 2118
Query: 560 SIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKS 619
SIDGFQG E+DLI+ S VRSN +GFL +++R+NV LTRA+ + + G+ TL +
Sbjct: 2119 SIDGFQGKEKDLILFSAVRSNANNELGFLRDARRLNVMLTRAKRGVILFGDQFTLANDPA 2178
Query: 620 VW 621
W
Sbjct: 2179 NW 2180
Score = 74 (31.1 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 38/143 (26%), Positives = 58/143 (40%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF--RTLVCTP 85
LNDSQ A LS L + + L+ GPPGTGKT ++ + + L
Sbjct: 1777 LNDSQKLACLSALTRR-------LTLVQGPPGTGKTHVACAIIDSWHKQNSNKKILAVAD 1829
Query: 86 TNVA----IKELAARVVKLVKESVERDC---RDAL--FFPLGDILLLGNNERLKVDSGVE 136
+NVA ++ L R ++ V+ D +A+ F D+L L N K ++
Sbjct: 1830 SNVAANNLVEGLKKRNIQAVRVGAGSDSDFHEEAIMEFHRYKDLLKLRKNNMQKEAKVMK 1889
Query: 137 EIYLDYRVKRLADCFAPLTGWSH 159
+ VK+ A G H
Sbjct: 1890 ALLFLEAVKKYNVVIATCVGSGH 1912
>UNIPROTKB|Q60560 [details] [associations]
symbol:IGHMBP2 "DNA-binding protein SMUBP-2" species:10036
"Mesocricetus auratus" [GO:0000049 "tRNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA helicase
activity" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0043621 "protein self-association"
evidence=ISS] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0030424 GO:GO:0008270 GO:GO:0006351
GO:GO:0043621 GO:GO:0043022 GO:GO:0030529 GO:GO:0000049
InterPro:IPR014001 SMART:SM00487 GO:GO:0043141 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 HOVERGEN:HBG077019
PANTHER:PTHR10887:SF23 EMBL:L15625 PIR:T48845
ProteinModelPortal:Q60560 SMR:Q60560 Uniprot:Q60560
Length = 989
Score = 282 (104.3 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 99/344 (28%), Positives = 170/344 (49%)
Query: 312 RKLQSSF-NELNLPSAVEKDLLEDLLKSFCLKRASLFLST---ASSSYMLHSVAMEPLNF 367
++ +S+F NE+ L K+ E + L A + L+T ASS L + +
Sbjct: 312 KREKSNFRNEIKLLRKELKEREEAAIVQ-SLTAADVVLATNTGASSDGPLKLLPENHFDV 370
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL--S 425
+V+DE AQ E+ IPL L K +L GD QLP S + A RSL ERL
Sbjct: 371 VVVDECAQALEASCWIPL-LKAPK-CILAGDHRQLPPTTISHKAALAGLSRSLMERLVEK 428
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG-----PMYGP 480
+ + +L++QYRMH +I+ + + Y ++ +V + + L G P
Sbjct: 429 HGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVA--GHLLKDLPGVADTEETSVP 486
Query: 481 YSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQVV 538
I+ G G E E ++ V + L++ +A +D+ I +++PY+ QV
Sbjct: 487 LLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHI-QALVDAGVHAGDIAVIAPYNLQVD 545
Query: 539 AIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVAL 598
+++ L +K+ +++ S+DGFQG E++ +I++ VRSN G +GFL+ +R+NVA+
Sbjct: 546 LLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAV 600
Query: 599 TRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADD 639
TRAR + ++ ++RT+ K++ + R F DD
Sbjct: 601 TRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
Score = 116 (45.9 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
++ L+ SQ +AV L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 188 NTALDPSQKEAVSFALAQKE------VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCA 241
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+NVA+ L R+ L K+ + R
Sbjct: 242 PSNVAVDNLVERLA-LCKKRILR 263
Score = 42 (19.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 89 AIKELAARVVKLVKESVERDC------RDALFFP--LGDILLLGNN 126
++KEL +R V L+K V C R F P LG +++L +N
Sbjct: 36 SLKELQSRGVCLLKLQVSSQCTGLYGQRLVTFEPRKLGPVVVLPSN 81
>SGD|S000000978 [details] [associations]
symbol:ECM32 "DNA dependent ATPase/DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0006449 "regulation of translational
termination" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] SGD:S000000978 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0003723 EMBL:BK006939 GO:GO:0005844
eggNOG:COG1112 GeneTree:ENSGT00700000104467 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 EMBL:U18922 GO:GO:0003724 PIR:S30862
RefSeq:NP_011103.1 ProteinModelPortal:P32644 SMR:P32644
DIP:DIP-5404N IntAct:P32644 MINT:MINT-499764 STRING:P32644
PaxDb:P32644 PeptideAtlas:P32644 EnsemblFungi:YER176W GeneID:856923
KEGG:sce:YER176W CYGD:YER176w HOGENOM:HOG000094475 OMA:KDTPRGT
OrthoDB:EOG4P8JS8 NextBio:983389 Genevestigator:P32644
GermOnline:YER176W GO:GO:0006449 Uniprot:P32644
Length = 1121
Score = 199 (75.1 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 60/176 (34%), Positives = 90/176 (51%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
+++DEA Q E+ + +PL L GI++ V GDE QL S SN SLFER+
Sbjct: 817 VIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQL-----SSFSNIPQLETSLFERVLSN 871
Query: 428 GYSKH--LLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSY----EKRFLHGPMYGPY 481
G K+ +L QYRMHP IS FP Y +++D T ++++ F + GP
Sbjct: 872 GTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKDGVTDEQKAWPGVQHPLFFYQCDLGPE 931
Query: 482 SFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQ 536
S V + + + + N E ++KI+ L +D K L IG+++PYSAQ
Sbjct: 932 S--RVRSTQRDIVGFTYENKHECVEIVKIIQILM---LDKKVPLEEIGVITPYSAQ 982
Score = 157 (60.3 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 558 VMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRK 617
V ++D FQG E+ II S VR+N IGFL + +R+NVALTRA+H L ++GN L +
Sbjct: 1038 VATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRKG 1097
Query: 618 KSVWEALVHDANARQCFF 635
+W+ + ++ F
Sbjct: 1098 DPLWKDYITYLEEQEVIF 1115
Score = 93 (37.8 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLV 82
S LN SQ AV L +I ++ GPPGTGKT T+ +++ +++ F L
Sbjct: 646 SDKLNRSQKTAVEHVLNN-------SITILQGPPGTGKTSTIEEIIIQVIERFHAFPILC 698
Query: 83 CTPTNVAIKELAARV------VKLVKE-SVERDCRDALFFPLGDILL 122
+N+AI +A ++ +K+++ S +++ + + PLG+I L
Sbjct: 699 VAASNIAIDNIAEKIMENRPQIKILRILSKKKEQQYSDDHPLGEICL 745
Score = 38 (18.4 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 291 KSIVGIKYLLHKRRSECHFVLRKLQS-------SFNELNL--PSAVEKDLLEDLL 336
+ IVG Y + + EC +++ +Q E+ + P + ++DLL D+L
Sbjct: 939 RDIVGFTY---ENKHECVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDIL 990
Score = 37 (18.1 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 135 VEEIYLDYRVKRLAD 149
++EIY D R+K +D
Sbjct: 633 IKEIYFDNRLKFSSD 647
>UNIPROTKB|F1MHU8 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051260 "protein homooligomerization" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0032797 "SMN complex" evidence=IEA] [GO:0032575 "ATP-dependent
5'-3' RNA helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00154 SMART:SM00382 SMART:SM00393
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0051260 GO:GO:0043022
GO:GO:0000049 InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GO:GO:0032797 GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:DAAA02063651 IPI:IPI01017505
RefSeq:XP_003584325.1 RefSeq:XP_003588118.1 UniGene:Bt.103594
Ensembl:ENSBTAT00000044489 GeneID:618606 KEGG:bta:618606
Uniprot:F1MHU8
Length = 981
Score = 281 (104.0 bits), Expect = 6.2e-27, Sum P(2) = 6.2e-27
Identities = 103/345 (29%), Positives = 178/345 (51%)
Query: 312 RKLQSSF-NELNLPSAVEKDLLED-LLKSFCLKRASLFLST---ASSSYMLHSVAMEPLN 366
++ +S+F +E+ L KD E +L+S L AS+ L+T AS+ L + +
Sbjct: 310 KREKSNFRDEIKLLRKELKDREEAAMLES--LAAASVVLATNTGASADGPLKLLPDSHFD 367
Query: 367 FLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS- 425
+VIDE AQ E+ IPL L K +L GD QLP + S + A SL ERL+
Sbjct: 368 MVVIDECAQALEASCWIPL-LKARK-CILAGDHKQLPPTIVSHKAALAGLSLSLMERLAE 425
Query: 426 -YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY----G- 479
+ + +L++QYRMH +I+ + + Y ++ +V + R L G G
Sbjct: 426 RHGAGALRMLTVQYRMHQAIARWASEALYHGQLTAHPSVA--GHLLRDLPGVAATEETGV 483
Query: 480 PYSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQV 537
P ++ G G E E ++ V + L++ +A +D+ + + I +++PY+ QV
Sbjct: 484 PLLLVDTAGCGLLELEEDDEQSKGNPGEVRLVGLHV-QALVDAGVRAADIAVITPYNLQV 542
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
+++ L + +++ S+DGFQG E++ +I+S VRSN G +GFL+ +R+NVA
Sbjct: 543 DLLRQSLAHRLPE-----LEIRSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVA 597
Query: 598 LTRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADD 639
+TRAR + ++ ++RT++ K++ + L R F DD
Sbjct: 598 VTRARRHVAVVCDSRTVSNHAFLKTLVDYLTEHGEVRTAFEYLDD 642
Score = 113 (44.8 bits), Expect = 6.2e-27, Sum P(2) = 6.2e-27
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
L+ SQ +AVL L Q + +I GPPGTGKT TV +++ ++ + L C P+N
Sbjct: 189 LDASQQEAVLFALSQKE------LAIIHGPPGTGKTTTVVEIILQAVKRGSKVLCCAPSN 242
Query: 88 VAIKELAARVVK 99
VA+ L R+ +
Sbjct: 243 VAVDNLVERLAQ 254
Score = 42 (19.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 87 NVAIKELAARVVKLVKESVERDCRDALF 114
NV++KEL +R V L+K V R L+
Sbjct: 34 NVSLKELQSRGVCLLKLQVSSQ-RTGLY 60
>MGI|MGI:99954 [details] [associations]
symbol:Ighmbp2 "immunoglobulin mu binding protein 2"
species:10090 "Mus musculus" [GO:0000049 "tRNA binding"
evidence=ISO] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001078 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in negative regulation of
transcription" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006412 "translation"
evidence=NAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IMP]
[GO:0030424 "axon" evidence=IDA] [GO:0030426 "growth cone"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032575 "ATP-dependent 5'-3' RNA helicase activity"
evidence=ISO] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043022 "ribosome binding" evidence=ISO;IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3'
DNA helicase activity" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=ISO] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154
SMART:SM00382 SMART:SM00393 MGI:MGI:99954 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0006412 GO:GO:0030424 GO:GO:0043025
GO:GO:0008270 GO:GO:0051260 GO:GO:0006351 GO:GO:0043621
GO:GO:0043022 GO:GO:0030426 GO:GO:0021522 GO:GO:0030529
GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 HOVERGEN:HBG077019
OrthoDB:EOG4GHZNJ PANTHER:PTHR10887:SF23 EMBL:L10075
IPI:IPI00113033 PIR:S35633 UniGene:Mm.3179
ProteinModelPortal:P40694 SMR:P40694 IntAct:P40694 STRING:P40694
PhosphoSite:P40694 PaxDb:P40694 PRIDE:P40694 UCSC:uc008fwa.1
InParanoid:P40694 CleanEx:MM_IGHMBP2 Genevestigator:P40694
GermOnline:ENSMUSG00000024831 Uniprot:P40694
Length = 993
Score = 277 (102.6 bits), Expect = 6.7e-27, Sum P(2) = 6.7e-27
Identities = 90/297 (30%), Positives = 152/297 (51%)
Query: 341 LKRASLFLST---ASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFG 397
L A + L+T ASS L + + + +V+DE AQ E+ IPL L K +L G
Sbjct: 341 LTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPL-LKAPK-CILAG 398
Query: 398 DECQLPAMVESKVSNEACFGRSLFERLSYL-GYSK-HLLSIQYRMHPSISCFPNSYFYEN 455
D QLP S + A RSL ERL+ G +L++QYRMH +I C+ + Y
Sbjct: 399 DHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHG 458
Query: 456 KIRDSSTVRKRSYEKRFLHG-----PMYGPYSFINVFG-GREEFIEHSCRNMVEVSVVMK 509
+ +V + + L G P I+ G G E E ++ V
Sbjct: 459 QFTSHPSVA--GHLLKDLPGVTDTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRL 516
Query: 510 ILLNLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGE 568
+ L++ +A +D+ + I +++PY+ QV +++ L +K+ +++ S+DGFQG E
Sbjct: 517 VTLHI-QALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQGRE 570
Query: 569 EDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALV 625
++ ++++ VRSN G +GFL+ +R+NVA+TRAR + ++ ++ T+ + E LV
Sbjct: 571 KEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFL-ETLV 626
Score = 117 (46.2 bits), Expect = 6.7e-27, Sum P(2) = 6.7e-27
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
++TL+ SQ +AV L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 188 NTTLDLSQKEAVSFALAQKE------LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 241
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+N+A+ L R+ L K+ + R
Sbjct: 242 PSNIAVDNLVERLA-LCKKRILR 263
>UNIPROTKB|E1BQD2 [details] [associations]
symbol:C4H4orf21 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AADN02009328
IPI:IPI00577016 Ensembl:ENSGALT00000019715 Uniprot:E1BQD2
Length = 913
Score = 342 (125.4 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 92/278 (33%), Positives = 155/278 (55%)
Query: 362 MEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVS-NEACFGR 418
++ L F +V+DE +Q+ E S +P+ + VL GD QLP ++ S +E +
Sbjct: 616 LDTLKFPVVVLDECSQMTEPTSLLPIARFQCEKLVLVGDPKQLPPTIQGSESIHEKGLEQ 675
Query: 419 SLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY 478
+LF+RL +G+ LL QYR HP+IS N FYE + D + ++RS +L P
Sbjct: 676 TLFDRLCLMGHKTILLRTQYRCHPAISAIANELFYEGNLIDGVSEKERSPLLDWL--PTL 733
Query: 479 GPYSFINVFGGREEFI-EHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQV 537
YS +N G E+ ++S NM EV +K + L + ID ++G+++ Y +Q+
Sbjct: 734 CFYS-VN---GLEQIERDNSFYNMAEVHFTVKFIQALIASGIDGS---AVGVITFYKSQM 786
Query: 538 VAIQEKLGSKYVNSAGF---AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRV 594
+Q L S ++S F AV+V ++D FQG E++++++S VR+ GF + KR+
Sbjct: 787 YKLQNLLRS--IHSEAFPVKAVQVSTVDAFQGAEKEIVVLSCVRTRQ---TGFTDSEKRM 841
Query: 595 NVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
NVALTRA+ L I+GN L++ + ++E +++ R+
Sbjct: 842 NVALTRAKRHLLIVGNLACLSKNR-LYERVINHCKGRE 878
Score = 47 (21.6 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRC--------DHKA-TIQLIWGPPGTGKTKTVSMLLVILL 74
L+ +LN QA +++ + M +H+ I +I G G GK+ +S++++ L+
Sbjct: 431 LTFSLNPDQAMSLIHIAQMMTSHENMKPAEEHQIFPITIIHGVFGAGKSFLLSVVILFLV 490
Query: 75 QM 76
Q+
Sbjct: 491 QL 492
>TAIR|locus:2162858 [details] [associations]
symbol:AT5G35970 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] EMBL:CP002688 GO:GO:0009570 GO:GO:0003677
GO:GO:0009941 InterPro:IPR014001 SMART:SM00487 IPI:IPI00520082
RefSeq:NP_198446.3 UniGene:At.45828 ProteinModelPortal:F4K1G7
SMR:F4K1G7 PRIDE:F4K1G7 EnsemblPlants:AT5G35970.1 GeneID:833589
KEGG:ath:AT5G35970 OMA:DHFQREL Uniprot:F4K1G7
Length = 961
Score = 288 (106.4 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 94/283 (33%), Positives = 147/283 (51%)
Query: 362 MEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLF 421
+E + +VIDEA Q E IP+ L G K +L GD CQL +V S+ + E G SL
Sbjct: 659 LETFDLVVIDEAGQSIEPSCWIPI-LQG-KRCILSGDPCQLAPVVLSRKALEGGLGVSLL 716
Query: 422 ERLSYL--GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSY-EKRFLHG--- 475
ER + L G L+ QYRM+ I+ + + Y ++ + +V + F+
Sbjct: 717 ERAASLHDGVLATKLTTQYRMNDVIAGWASKEMYGGWLKSAPSVASHLLIDSPFVKATWI 776
Query: 476 ---PMY-----GPYSFINVFGGREEFIEH----SCRNMVEVSVVMKILLNLYKAWIDSKE 523
P+ PY ++V G EE ++ S N E +V+ +++L A +
Sbjct: 777 TQCPLVLLDTRMPYGSLSV--GCEERLDPAGTGSLYNEGEADIVVNHVISLIYAGVSP-- 832
Query: 524 KLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGG 583
++I + SPY AQV ++E+L V V+V +ID FQG E D +IIS VRSNN G
Sbjct: 833 -MAIAVQSPYVAQVQLLRERLDDFPVADG---VEVATIDSFQGREADAVIISMVRSNNLG 888
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
++GFL +S+R+NVA+TRAR + ++ ++ T+ + L H
Sbjct: 889 AVGFLGDSRRMNVAITRARKHVAVVCDSSTICHNTFLARLLRH 931
Score = 104 (41.7 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 16 WNET--FGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVIL 73
W+E +S + SQ +A+ + + K + ++ GPPGTGKT + ++ +
Sbjct: 473 WSEAELSDEPVSKLFDSSQRRAIA-----LGVNKKRPVMIVQGPPGTGKTGMLKEVITLA 527
Query: 74 LQMKFRTLVCTPTNVAIKELAARVVKL 100
+Q R LV PTN A+ + +++ L
Sbjct: 528 VQQGERVLVTAPTNAAVDNMVEKLLHL 554
>UNIPROTKB|E2R760 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IEA] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0032797 "SMN complex" evidence=IEA] [GO:0032575
"ATP-dependent 5'-3' RNA helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154 SMART:SM00382
SMART:SM00393 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0051260
GO:GO:0043022 GO:GO:0000049 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 GO:GO:0032797 GeneTree:ENSGT00700000104572
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575
PANTHER:PTHR10887:SF23 EMBL:AAEX03011604 Ensembl:ENSCAFT00000038980
NextBio:20858044 Uniprot:E2R760
Length = 992
Score = 274 (101.5 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 101/344 (29%), Positives = 173/344 (50%)
Query: 312 RKLQSSFNELNLPSAVEKDLLED-LLKSFCLKRASLFLST---ASSSYMLHSVAMEPLNF 367
R+ S +NE+ L K+ E +L+S L A++ L+T ASS L + +
Sbjct: 313 REKSSVWNEVKLLRKELKEREEAAMLES--LTSAAVVLATNTGASSDGPLKLLPDTHFDV 370
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
+VIDE AQ E+ IPL L K +L GD QLP S + A SL ERL+
Sbjct: 371 VVIDECAQALEASCWIPL-LKARK-CILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEE 428
Query: 428 GYSK--HLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY----G-P 480
++ L++QYRMH +I + + Y ++ +V + R L G G P
Sbjct: 429 HGARVVRTLTVQYRMHQAIMRWASEALYHGQLTAHPSVA--GHLLRDLPGVAATEETGIP 486
Query: 481 YSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQVV 538
++ G G E + ++ V + L++ +A +D+ + S I +++PY+ QV
Sbjct: 487 LLLVDTAGCGLFELEDDDDQSKGNPGEVRLVSLHI-QALVDAGVQASDIAVITPYNLQVD 545
Query: 539 AIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVAL 598
+++ L ++ +++ S+DGFQG E++ +++S VRSN G +GFL+ +R+NVA+
Sbjct: 546 LLRQSLAHRHPE-----LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAV 600
Query: 599 TRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADD 639
TRAR + ++ ++RT++ K++ + R F DD
Sbjct: 601 TRARRHVAVVCDSRTVSNHAFLKTLVDHFTEHGEVRTAFEYLDD 644
Score = 115 (45.5 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
+++L+ SQ +AV L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 188 NTSLDASQKEAVSFALSQKE------LAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCA 241
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+N+A+ L R+ + K+ + R
Sbjct: 242 PSNIAVDNLVERLARC-KQKILR 263
>UNIPROTKB|E2R8W1 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00154 SMART:SM00382 SMART:SM00393
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10
CTD:3508 OMA:HARQRIS PANTHER:PTHR10887:SF23 EMBL:AAEX03011604
RefSeq:XP_540807.2 Ensembl:ENSCAFT00000017093 GeneID:483686
KEGG:cfa:483686 Uniprot:E2R8W1
Length = 1010
Score = 274 (101.5 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 101/344 (29%), Positives = 173/344 (50%)
Query: 312 RKLQSSFNELNLPSAVEKDLLED-LLKSFCLKRASLFLST---ASSSYMLHSVAMEPLNF 367
R+ S +NE+ L K+ E +L+S L A++ L+T ASS L + +
Sbjct: 313 REKSSVWNEVKLLRKELKEREEAAMLES--LTSAAVVLATNTGASSDGPLKLLPDTHFDV 370
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
+VIDE AQ E+ IPL L K +L GD QLP S + A SL ERL+
Sbjct: 371 VVIDECAQALEASCWIPL-LKARK-CILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEE 428
Query: 428 GYSK--HLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY----G-P 480
++ L++QYRMH +I + + Y ++ +V + R L G G P
Sbjct: 429 HGARVVRTLTVQYRMHQAIMRWASEALYHGQLTAHPSVA--GHLLRDLPGVAATEETGIP 486
Query: 481 YSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQVV 538
++ G G E + ++ V + L++ +A +D+ + S I +++PY+ QV
Sbjct: 487 LLLVDTAGCGLFELEDDDDQSKGNPGEVRLVSLHI-QALVDAGVQASDIAVITPYNLQVD 545
Query: 539 AIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVAL 598
+++ L ++ +++ S+DGFQG E++ +++S VRSN G +GFL+ +R+NVA+
Sbjct: 546 LLRQSLAHRHPE-----LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAV 600
Query: 599 TRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADD 639
TRAR + ++ ++RT++ K++ + R F DD
Sbjct: 601 TRARRHVAVVCDSRTVSNHAFLKTLVDHFTEHGEVRTAFEYLDD 644
Score = 115 (45.5 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
+++L+ SQ +AV L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 188 NTSLDASQKEAVSFALSQKE------LAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCA 241
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+N+A+ L R+ + K+ + R
Sbjct: 242 PSNIAVDNLVERLARC-KQKILR 263
>DICTYBASE|DDB_G0271732 [details] [associations]
symbol:DDB_G0271732 "AN1-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0032508 "DNA duplex unwinding"
evidence=ISS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51061
SMART:SM00382 dictyBase:DDB_G0271732 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000006 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10
OMA:HARQRIS RefSeq:XP_645520.1 ProteinModelPortal:Q75JA0
PRIDE:Q75JA0 EnsemblProtists:DDB0232283 GeneID:8618149
KEGG:ddi:DDB_G0271732 InParanoid:Q75JA0 ProtClustDB:CLSZ2846906
Uniprot:Q75JA0
Length = 1024
Score = 288 (106.4 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 103/342 (30%), Positives = 168/342 (49%)
Query: 288 GLSKSIVGIKYLLHKRRSECHFVLRKLQSSFNELNLP-SAVEKDLLEDLLKSFCLKRASL 346
G+ I + L K + H R +QSS EL + EK L++ ++ L
Sbjct: 347 GIKDEIKSLSKQLLKVKQ--HSERRVIQSSIKELRIDLKNREKSLIQQVIND---SNVIL 401
Query: 347 FLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMV 406
+T +S L + + +++VIDE AQ E+ IP+Q G K +L GD QLP +
Sbjct: 402 STNTGASDSSLKGI--DNFDWVVIDECAQALEASCWIPIQ-KGNK-LLLAGDHQQLPPTI 457
Query: 407 ESKVSNEACFGRSLFERL--SYLGYSKHLLSIQYRMHPSISCFPNSYFYENK-IRDSSTV 463
S + + +LFER+ Y LL++QYRM+ I + + FY +K I D S
Sbjct: 458 HSMEAAKMGLSITLFERIIKQYGDQVSRLLNVQYRMNHKIMDWSSMEFYNSKMIADKSVS 517
Query: 464 RKR--SYEKRFLHGPMYG--PYSFINVFG-GREEFIE---HSCRNMVEVSVVMKILLNLY 515
+ + + + P I+ G EE + S N EV VV + + L
Sbjct: 518 NHLLVTGDSPKIRNTLTTTCPLLMIDTSGCDMEESQDDEGESKFNNGEVIVVKRHIEKLI 577
Query: 516 KAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIIS 575
+ + + IG+++PY+ QV ++ L KY + +++ ++DGFQG E+D+IIIS
Sbjct: 578 ECGVKPND---IGVITPYNGQVKLLKSYLSKKYSS-----MEIGTVDGFQGREKDVIIIS 629
Query: 576 TVRSNNGG--SIGFLSNSKRVNVALTRARHCLWILGNARTLT 615
VRSN +GFL+ +R NVA+TRAR + ++ + T++
Sbjct: 630 MVRSNTDAPHKVGFLTEDRRTNVAITRARKHVVVVCDTDTIS 671
Score = 106 (42.4 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83
++ LN SQ +A+L L + I GPPGTGKT TV +V L++ + L C
Sbjct: 231 INKGLNQSQKEAILFSLSSN------DVACIHGPPGTGKTTTVVEFIVQLIKSGKKVLAC 284
Query: 84 TPTNVAIKELAARVVKLVKESVERDCRDAL 113
P+N+++ + + KL++ S C L
Sbjct: 285 GPSNLSVDNM---LEKLLEYSNSSSCNGFL 311
Score = 40 (19.1 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 811 NLADNDNNSGSDLSGAAFDSRNYAENSNVSESLSLMK 847
N DN+NNS + + ++ N +SN + ++K
Sbjct: 713 NKDDNNNNSTTTTTTTTTNTNN---DSNKKSKIEMLK 746
>UNIPROTKB|F1RY71 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051260 "protein homooligomerization" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0032797 "SMN complex" evidence=IEA] [GO:0032575 "ATP-dependent
5'-3' RNA helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0051260 GO:GO:0043022 GO:GO:0000049
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043141
GO:GO:0032797 GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:CU694814 RefSeq:XP_003122472.2
Ensembl:ENSSSCT00000014076 GeneID:100520173 KEGG:ssc:100520173
Uniprot:F1RY71
Length = 987
Score = 267 (99.0 bits), Expect = 6.2e-26, Sum P(2) = 6.2e-26
Identities = 96/320 (30%), Positives = 158/320 (49%)
Query: 335 LLKSFCLKRASLFLST-ASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHA 393
+L+S R L + ASS L + + +VIDE AQ E+ +PL L K
Sbjct: 335 MLESLTAARVVLATNAGASSDGPLKLLPDGHFDVVVIDECAQALEASCWVPL-LKARK-C 392
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERL-SYLGYSK-HLLSIQYRMHPSISCFPNSY 451
+L GD QLP + S + A SL ERL G +L++QYRMH +I+ + +
Sbjct: 393 ILAGDHKQLPPTIISHKAALAGLALSLMERLVEERGAGVLRMLTVQYRMHQAIAQWASEA 452
Query: 452 FYENKIRDSSTVRKRSYEKRFLHGPMY----G-PYSFINVFG-GR---EEFIEHSCRNMV 502
Y ++ ++V + R L G G P ++ G G EE E S N
Sbjct: 453 LYHGRLTAHASVA--GHLLRDLPGVAATEETGIPLLLVDTAGCGLFELEEEDEQSKGNPG 510
Query: 503 EVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSID 562
EV +V + L A + + + + +++PY+ QV +++ L ++ +++ S+D
Sbjct: 511 EVRLVRLHVQALVDAGVPAGD---VAVITPYNLQVDLLRQSLAQRHPE-----LEIKSVD 562
Query: 563 GFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRK---KS 619
GFQG E++ +I+S VRSN G +GFL+ +R+NVA+TRAR + ++ ++RT++ K+
Sbjct: 563 GFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVVCDSRTVSNHAFLKT 622
Query: 620 VWEALVHDANARQCFFNADD 639
+ R F DD
Sbjct: 623 LVAYFAEHGEVRTAFEYLDD 642
Score = 118 (46.6 bits), Expect = 6.2e-26, Sum P(2) = 6.2e-26
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
++ L+ SQ +AVL L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 186 NTALDASQKEAVLFALSQKE------LAIIHGPPGTGKTTTVVEIILQAVKQGSKVLCCA 239
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+NVA+ L R+ + K+ + R
Sbjct: 240 PSNVAVDNLVERLARW-KQRIVR 261
Score = 42 (19.8 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 87 NVAIKELAARVVKLVKESVERDCRDALF 114
NV++KEL +R V L+K V R L+
Sbjct: 34 NVSLKELQSRGVCLLKLQVSSQ-RTGLY 60
>RGD|2322000 [details] [associations]
symbol:LOC100363957 "hypothetical protein LOC100363957"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 RGD:2322000
GO:GO:0008270 GeneTree:ENSGT00550000074391 IPI:IPI00777941
Ensembl:ENSRNOT00000014695 Uniprot:F1M404
Length = 919
Score = 333 (122.3 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 97/331 (29%), Positives = 168/331 (50%)
Query: 306 ECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPL 365
E H ++R+ + + + ++E+ L LK+A + T ++ M L
Sbjct: 564 ELHALMREELTPIERVYVRKSIEQHKLGT--NRVLLKQARVVGITCAACPF---PCMNDL 618
Query: 366 NF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVE-SKVSNEACFGRSLFE 422
F +V+DE +Q+ E S +P+ + +L GD QLP ++ S ++ ++LF+
Sbjct: 619 KFPVVVLDECSQMTEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHGNGLEQTLFD 678
Query: 423 RLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYS 482
RL +G+ L QYR HP IS N FYE + + + R+RS +L P
Sbjct: 679 RLCLMGHKPIQLRTQYRCHPVISAIANDLFYEGNLVNGISERERSPVLEWL--PTL---C 733
Query: 483 FINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQE 542
F NV G + E+S N+ E + +K++ +L + ++ IG+++ Y +Q+ I
Sbjct: 734 FYNVTGTEQVERENSFVNVAEAAFTLKLIRSLIASGLEGS---MIGVITLYKSQMYKICS 790
Query: 543 KLGSKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601
L + V+ AV+V ++D FQG E+++II+S VR+ +GF+ + KR+NVALTR
Sbjct: 791 LLSAVDVDHPDVKAVEVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRG 847
Query: 602 RHCLWILGNARTLTRKKSVWEALVHDANARQ 632
R L I+G+ L RK +W ++ R+
Sbjct: 848 RRHLLIIGSLSCL-RKNQLWGRVIQHCKGRE 877
Score = 43 (20.2 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQM 76
H I +I G G GK+ ++++++ L+++
Sbjct: 462 HSLPITVIHGVFGAGKSYLLAVVILFLVEL 491
>UNIPROTKB|F1PCI1 [details] [associations]
symbol:C4orf21 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AAEX03016829
Ensembl:ENSCAFT00000018553 Uniprot:F1PCI1
Length = 1024
Score = 327 (120.2 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 88/275 (32%), Positives = 145/275 (52%)
Query: 362 MEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVESKVSNEACFGR 418
M L F +V+DE +Q+ E S +P+ + +L GD QL P + S ++E +
Sbjct: 719 MNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLSPTIQGSDAAHENGLEQ 778
Query: 419 SLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY 478
+LF+RL +G+ LL QYR HP+IS N FYE + D + +R +L P
Sbjct: 779 TLFDRLCLMGHKPVLLRTQYRCHPAISDISNDLFYEGNLVDGISETERGPLLEWL--PTL 836
Query: 479 GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVV 538
F N+ G + ++S N+ E + +K++ +L + I IG+++ Y +Q+
Sbjct: 837 ---CFYNIKGPEQIERDNSFHNVAEAAFTLKLIQSLIASGIAGS---MIGVITLYKSQMY 890
Query: 539 AIQEKLGS-KYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
+ L + + N AV+V ++D FQG E+++II+S VR+ +GF+ + KR+NVA
Sbjct: 891 KLCHLLSAVDFDNPDIKAVQVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVA 947
Query: 598 LTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
LTR R L I+GN L RK +W ++ R+
Sbjct: 948 LTRGRRHLLIVGNLACL-RKNRLWGRVIQHCEGRR 981
Score = 50 (22.7 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNV 88
H I +I G G GK+ ++++++ +Q+ ++ V T NV
Sbjct: 566 HTLPITIIHGVFGAGKSYLLAVVILFFVQLFEKSEVLTVGNV 607
>UNIPROTKB|E1BG37 [details] [associations]
symbol:E1BG37 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 EMBL:DAAA02016483 IPI:IPI00912094
Ensembl:ENSBTAT00000017567 OMA:HKLGTNK Uniprot:E1BG37
Length = 933
Score = 332 (121.9 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 88/275 (32%), Positives = 145/275 (52%)
Query: 362 MEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVE-SKVSNEACFGR 418
M L F +V+DE +Q+ E S +P+ + +L GD QLP ++ S ++E +
Sbjct: 621 MNDLKFPVVVLDECSQMTEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQ 680
Query: 419 SLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY 478
+LF+RL +G+ LL QYR HP+IS N FYE + + + +RS +L P
Sbjct: 681 TLFDRLCLMGHKPILLRTQYRCHPTISAIANDLFYEGNLMNGISETERSPLLEWL--PTL 738
Query: 479 GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVV 538
F NV G + +S N+ E + +K++ +L + I IG+++ Y +Q+
Sbjct: 739 ---CFYNVKGLEQIERGNSFHNVAEAAFTLKLIQSLIASGIAGS---MIGVITLYKSQMY 792
Query: 539 AIQEKLGSKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
+ L + + AV+V ++D FQG E+++II+S VR+ +GF+ + KR+NVA
Sbjct: 793 KLCHLLSAMDFDHPNLKAVQVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVA 849
Query: 598 LTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
LTR R L I+GN L RK +W ++ R+
Sbjct: 850 LTRGRRHLLIVGNLACL-RKNRLWGRVIQHCEGRE 883
Score = 42 (19.8 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQM 76
H I +I G G GK+ ++++++ +Q+
Sbjct: 468 HTLPITIIHGVFGAGKSYLLAVVILFFVQL 497
Score = 37 (18.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 144 VKRLADCFAPLT 155
+K + DCF P T
Sbjct: 368 LKNIRDCFNPAT 379
>UNIPROTKB|Q6ZU11 [details] [associations]
symbol:Q6ZU11 "Uncharacterized protein FLJ44066"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0016021 GO:GO:0008270
eggNOG:COG1112 UniGene:Hs.713663 EMBL:AK126054 EMBL:AL137700
IPI:IPI00300207 IPI:IPI00880006 PIR:T46441 RefSeq:NP_060862.3
UniGene:Hs.380346 ProteinModelPortal:Q6ZU11 SMR:Q6ZU11
PhosphoSite:Q6ZU11 DMDM:74711848 PaxDb:Q6ZU11 PRIDE:Q6ZU11
GeneID:55345 KEGG:hsa:55345 CTD:55345 HPA:HPA030706
neXtProt:NX_Q6ZU11 PharmGKB:PA144596502 HOGENOM:HOG000155510
InParanoid:Q6ZU11 PhylomeDB:Q6ZU11 GenomeRNAi:55345 NextBio:59679
ArrayExpress:Q6ZU11 Bgee:Q6ZU11 Genevestigator:Q6ZU11
Uniprot:Q6ZU11
Length = 926
Score = 325 (119.5 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 86/275 (31%), Positives = 145/275 (52%)
Query: 362 MEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVE-SKVSNEACFGR 418
M L F +V+DE +Q+ E S +P+ + +L GD QLP ++ S ++E +
Sbjct: 620 MNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQ 679
Query: 419 SLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY 478
+LF+RL +G+ LL QYR HP+IS N FY+ + + T +RS +L P
Sbjct: 680 TLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWL--PTL 737
Query: 479 GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVV 538
F NV G + ++S N+ E + +K++ +L + I IG+++ Y +Q+
Sbjct: 738 ---CFYNVKGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGS---MIGVITLYKSQMY 791
Query: 539 AIQEKLGSKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
+ L + + V+V ++D FQG E+++II+S VR+ +GF+ + KR+NVA
Sbjct: 792 KLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVA 848
Query: 598 LTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
LTR + L I+GN L RK +W ++ R+
Sbjct: 849 LTRGKRHLLIVGNLACL-RKNQLWGRVIQHCEGRE 882
Score = 41 (19.5 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQM 76
H I +I G G GK+ ++++++ +Q+
Sbjct: 467 HTFPITIIHGVFGAGKSYLLAVVILFFVQL 496
>SGD|S000001500 [details] [associations]
symbol:HCS1 "Hexameric DNA polymerase alpha-associated DNA
helicase A" species:4932 "Saccharomyces cerevisiae" [GO:0003677
"DNA binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0033203 "DNA helicase A
complex" evidence=IDA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 SGD:S000001500 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 EMBL:BK006944 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:X74152 GO:GO:0006273 GO:GO:0043141
HOGENOM:HOG000185831 OrthoDB:EOG444PTN GO:GO:0033203 EMBL:Z28017
PIR:S34700 RefSeq:NP_012908.1 ProteinModelPortal:P34243 SMR:P34243
DIP:DIP-1383N IntAct:P34243 MINT:MINT-399891 STRING:P34243
PaxDb:P34243 EnsemblFungi:YKL017C GeneID:853852 KEGG:sce:YKL017C
CYGD:YKL017c GeneTree:ENSGT00700000104572 OMA:QGGDFPE
SABIO-RK:P34243 NextBio:975085 Genevestigator:P34243
GermOnline:YKL017C TIGRFAMs:TIGR00376 Uniprot:P34243
Length = 683
Score = 249 (92.7 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 88/297 (29%), Positives = 144/297 (48%)
Query: 368 LVIDEAAQLKESESTIPL--QLSGIKHAVLFGDECQLPAMVESKVSNEACFG--RSLFER 423
L+IDE +Q E + IPL + VL GD QLP ++++ +LF+R
Sbjct: 392 LIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDR 451
Query: 424 LSYLGYSKHL---LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSY-EKRFLHG-PMY 478
+ + + + L++QYRM+ I FP+ Y K+ +TV R + + P
Sbjct: 452 IIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSE 511
Query: 479 G------PYSFINVFGGR------EEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS 526
P + + G E I S N E+++V + + NL + S
Sbjct: 512 DDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPEN---S 568
Query: 527 IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG 586
IG++SPY+AQV +++ + + + +++ ++DGFQG E+D+II+S VRSN +G
Sbjct: 569 IGVISPYNAQVSHLKKLIHDELKLTD---IEISTVDGFQGREKDVIILSLVRSNEKFEVG 625
Query: 587 FLSNSKRVNVALTRARHCLWILGNARTLTR--KKSV--WEALVHDANARQCFFNADD 639
FL +R+NVA+TR R L ++GN L R K + W + NA + N DD
Sbjct: 626 FLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYLKSWSEWCEE-NADVRYPNIDD 681
Score = 106 (42.4 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL--QMKFRTL 81
L+ LNDSQ A+ ++ TI I GPPGTGKT T+ L+ LL + R L
Sbjct: 204 LNPNLNDSQKTAI-----NFAINNDLTI--IHGPPGTGKTFTLIELIQQLLIKNPEERIL 256
Query: 82 VCTPTNVAIKELAARVVKLVKESV 105
+C P+N+++ + R+ LV ++
Sbjct: 257 ICGPSNISVDTILERLTPLVPNNL 280
Score = 37 (18.1 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 82 VCTPTNVAIKELAARVVKLVKES 104
+ + N +K+++ + KL++E+
Sbjct: 301 ILSKKNTIVKDISQEIDKLIQEN 323
>UNIPROTKB|G5EA02 [details] [associations]
symbol:C4orf21 "Uncharacterized protein C4orf21"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
EMBL:CH471057 InterPro:IPR018838 Pfam:PF10382 UniGene:Hs.713663
RefSeq:NP_060862.3 UniGene:Hs.380346 GeneID:55345 KEGG:hsa:55345
CTD:55345 GenomeRNAi:55345 NextBio:59679 EMBL:AC106864
EMBL:AC023886 PRIDE:G5EA02 Ensembl:ENST00000505019 HGNC:HGNC:25654
OMA:NTYESSG ArrayExpress:G5EA02 Bgee:G5EA02 Uniprot:G5EA02
Length = 2104
Score = 325 (119.5 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 86/275 (31%), Positives = 145/275 (52%)
Query: 362 MEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVE-SKVSNEACFGR 418
M L F +V+DE +Q+ E S +P+ + +L GD QLP ++ S ++E +
Sbjct: 1798 MNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQ 1857
Query: 419 SLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY 478
+LF+RL +G+ LL QYR HP+IS N FY+ + + T +RS +L P
Sbjct: 1858 TLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWL--PTL 1915
Query: 479 GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVV 538
F NV G + ++S N+ E + +K++ +L + I IG+++ Y +Q+
Sbjct: 1916 ---CFYNVKGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGS---MIGVITLYKSQMY 1969
Query: 539 AIQEKLGSKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
+ L + + V+V ++D FQG E+++II+S VR+ +GF+ + KR+NVA
Sbjct: 1970 KLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVA 2026
Query: 598 LTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
LTR + L I+GN L RK +W ++ R+
Sbjct: 2027 LTRGKRHLLIVGNLACL-RKNQLWGRVIQHCEGRE 2060
Score = 41 (19.5 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQM 76
H I +I G G GK+ ++++++ +Q+
Sbjct: 1645 HTFPITIIHGVFGAGKSYLLAVVILFFVQL 1674
>TAIR|locus:2200996 [details] [associations]
symbol:SDE3 "SILENCING DEFECTIVE" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0009616
"virus induced gene silencing" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] InterPro:IPR026127 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005737
eggNOG:COG1112 EMBL:AC005106 GO:GO:0003724 GO:GO:0035194
GO:GO:0009616 HOGENOM:HOG000239755 EMBL:AF339908 EMBL:AK117698
IPI:IPI00521883 PIR:C86189 RefSeq:NP_172037.1 UniGene:At.15329
UniGene:At.42398 ProteinModelPortal:Q8GYD9 SMR:Q8GYD9 STRING:Q8GYD9
PaxDb:Q8GYD9 PRIDE:Q8GYD9 EnsemblPlants:AT1G05460.1 GeneID:837047
KEGG:ath:AT1G05460 GeneFarm:2423 TAIR:At1g05460 InParanoid:Q8GYD9
OMA:DEREGNN PhylomeDB:Q8GYD9 ProtClustDB:CLSN2682016
Genevestigator:Q8GYD9 GermOnline:AT1G05460 PANTHER:PTHR10887:SF165
Uniprot:Q8GYD9
Length = 1002
Score = 267 (99.0 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 99/315 (31%), Positives = 152/315 (48%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAV--LF 396
L R L +ST S+ +L++ + +F +++DEA Q E E+ I + + V L
Sbjct: 513 LTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLA 572
Query: 397 GDECQLPAMVESKVSNEACFGRSLFERL---SYL--GYSKHLLSI--QYRMHPSISCFPN 449
GD QL ++ S+ + G+S ERL Y G ++ + YR HP I P+
Sbjct: 573 GDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPS 632
Query: 450 SYFYENKIRDSSTVRKRSYEK-RFLHGPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSVV 507
FY+ ++ S FL + P F + G E E S N +E+S V
Sbjct: 633 KLFYDGELVASKEDTDSVLASLNFLPNKEF-PMVFYGIQGCDEREGNNPSWFNRIEISKV 691
Query: 508 MKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGG 567
++ + L D ++ IG+++PY QV+ I+E L + VKV S++ FQG
Sbjct: 692 IETIKRLTAN--DCVQEEDIGVITPYRQQVMKIKEVLDRLDMTE----VKVGSVEQFQGQ 745
Query: 568 EEDLIIISTVRS-------NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSV 620
E+ +IIISTVRS + +GFLSN +R NVA+TRA L I+GN + + +
Sbjct: 746 EKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMN- 804
Query: 621 WEALVH---DANARQ 632
W L+ D NA Q
Sbjct: 805 WNKLLWRCVDNNAYQ 819
Score = 91 (37.1 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 20 FGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL--QMK 77
F P +S LN A+ + S + C A +I GPPGTGKT T+ +V L Q
Sbjct: 390 FVP-ISPALN---AEQICSIEMVLGCKG-APPYVIHGPPGTGKTMTLVEAIVQLYTTQRN 444
Query: 78 FRTLVCTPTNVAIKELAARVVKL 100
R LVC P+N A + +++ L
Sbjct: 445 ARVLVCAPSNSAADHILEKLLCL 467
>RGD|1565575 [details] [associations]
symbol:Setx "senataxin" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=ISO] [GO:0007623 "circadian rhythm"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR026121 RGD:1565575 GO:GO:0006302 PANTHER:PTHR10887:SF15
IPI:IPI00560336 Ensembl:ENSRNOT00000018281 UCSC:RGD:1565575
ArrayExpress:F1M0E2 Uniprot:F1M0E2
Length = 380
Score = 179 (68.1 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 61/217 (28%), Positives = 101/217 (46%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFER 423
P + +++DEA Q E E+ PL + VL GD QLP V S + E + +S+ R
Sbjct: 23 PFSCVIVDEAGQSCEVETLSPL-IHRCNKLVLVGDPKQLPPTVISMKAQEYGYDQSMMAR 81
Query: 424 LSYL---GYSKHL--------LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
L +++ L+IQYRMHP I FP++Y Y ++ + +
Sbjct: 82 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTETIRCSSEW 141
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
P + PY +V G E+ S N+ E+ +VM+I+ + + D + +IGI++
Sbjct: 142 ---P-FQPYLVFDVGDGSEQRDNDSYINVQEIKLVMEIIKLIKEKRKDISFR-NIGIITH 196
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEE 569
Y AQ IQ+ L ++ + G +M + Q E
Sbjct: 197 YKAQKTMIQKDLEKEF-DKKGLLQPIMMGESRQQDSE 232
Score = 163 (62.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 557 KVMSIDGFQGGEEDLIIISTVRSNN-GGSIGFLSNSKRVNVALTRARHCLWILGNARTLT 615
+V ++D FQG ++D II++ VR++ GSIGFL++ +R+NV +TRA++ L+ILG+ RTL
Sbjct: 274 EVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLM 333
Query: 616 RKKSVWEALVHDANARQCFFNADD 639
+ W L+ DA R D
Sbjct: 334 ENQH-WYELIQDAQKRGAIIKTCD 356
>CGD|CAL0006154 [details] [associations]
symbol:orf19.6199 species:5476 "Candida albicans" [GO:0043141
"ATP-dependent 5'-3' DNA helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0033203 "DNA helicase
A complex" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR004483 SMART:SM00382
CGD:CAL0006154 GO:GO:0005524 GO:GO:0003677 GO:GO:0017111
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000038
EMBL:AACQ01000037 TIGRFAMs:TIGR00376 RefSeq:XP_718706.1
RefSeq:XP_718790.1 ProteinModelPortal:Q5AAW1 STRING:Q5AAW1
GeneID:3639532 GeneID:3639630 KEGG:cal:CaO19.13579
KEGG:cal:CaO19.6199 Uniprot:Q5AAW1
Length = 719
Score = 242 (90.2 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 73/244 (29%), Positives = 129/244 (52%)
Query: 408 SKVSNEACFGRSLFERLSYLGYS---KHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVR 464
S S+ + +LF+RL + K LL +QYRM+ SI FP+ Y+N+++ +VR
Sbjct: 459 SSSSSASILATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQLKCDDSVR 518
Query: 465 KRSYEKR---FLHGPMYGPYSFINVFGGR--EEFIEH----SCRNMVEVSVVMKILLNLY 515
+ S ++ + + GG E+ E S N +E+ VV + L
Sbjct: 519 EISLVDLPGVEINDDTMTKCIWYDTQGGEFPEQISESIDGDSKYNDMELLVVKGHIKKLL 578
Query: 516 KAWIDSKEKLSIGIVSPYSAQVVAIQEK--LGSKYVNSAGF----AVKVMSIDGFQGGEE 569
+ + ++ IG+++PYSAQV ++++ LG + +SA +++ ++DGFQG E+
Sbjct: 579 SSGVQPQD---IGVIAPYSAQVQNLKKQMGLGGEVGSSANGDKDGQIEISTVDGFQGREK 635
Query: 570 DLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSV----WEALV 625
++II++ VRSN+ IGFLS +R+NVA+TR + L ++G+ + + + W V
Sbjct: 636 EVIILTLVRSNDSREIGFLSEQRRLNVAMTRPKRQLCVVGDLELMNQSGNKFLQSWSKFV 695
Query: 626 HDAN 629
D N
Sbjct: 696 EDGN 699
Score = 145 (56.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 56/174 (32%), Positives = 91/174 (52%)
Query: 318 FNELNLPSAVEKDLL--EDLLKSFCLKRASLFLST--ASSSYML-HSVAM---EPLNF-- 367
++EL L ++K+L E + + L +A + ++T S SY L +SV E + F
Sbjct: 351 YSELKL---LKKELRQRERKIVNELLVQAQVVVATLHGSGSYELKNSVGTNNNEGIVFDT 407
Query: 368 LVIDEAAQLKESESTIPLQLSG-IKHAVLFGDECQLPAMVESKVSNEAC----------F 416
++IDE +Q E + IPL LS K V+ GD QLP ++++ SN +
Sbjct: 408 IIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPTIKTQKSNSSSPSSSSSSASIL 467
Query: 417 GRSLFERLSYLGYS---KHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRS 467
+LF+RL + K LL +QYRM+ SI FP+ Y+N+++ +VR+ S
Sbjct: 468 ATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQLKCDDSVREIS 521
Score = 103 (41.3 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 11 QSEGVWNETFGPS--LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSM 68
+S G N G + LN SQ QA+ + + I +I GPPGTGKT T+
Sbjct: 203 KSNGTSNNNNGEINFFNDKLNASQRQAIDFAIND------SNITIIHGPPGTGKTYTLIE 256
Query: 69 LLVILLQMKFRTLVCTPTNVAIKELAARV 97
L+ L + LVC P+N+++ + R+
Sbjct: 257 LIQQLTSKGEKVLVCGPSNISVDTILERL 285
>UNIPROTKB|Q5AAW1 [details] [associations]
symbol:HCS1 "Putative uncharacterized protein HCS1"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR004483 SMART:SM00382 CGD:CAL0006154 GO:GO:0005524
GO:GO:0003677 GO:GO:0017111 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AACQ01000038 EMBL:AACQ01000037
TIGRFAMs:TIGR00376 RefSeq:XP_718706.1 RefSeq:XP_718790.1
ProteinModelPortal:Q5AAW1 STRING:Q5AAW1 GeneID:3639532
GeneID:3639630 KEGG:cal:CaO19.13579 KEGG:cal:CaO19.6199
Uniprot:Q5AAW1
Length = 719
Score = 242 (90.2 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 73/244 (29%), Positives = 129/244 (52%)
Query: 408 SKVSNEACFGRSLFERLSYLGYS---KHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVR 464
S S+ + +LF+RL + K LL +QYRM+ SI FP+ Y+N+++ +VR
Sbjct: 459 SSSSSASILATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQLKCDDSVR 518
Query: 465 KRSYEKR---FLHGPMYGPYSFINVFGGR--EEFIEH----SCRNMVEVSVVMKILLNLY 515
+ S ++ + + GG E+ E S N +E+ VV + L
Sbjct: 519 EISLVDLPGVEINDDTMTKCIWYDTQGGEFPEQISESIDGDSKYNDMELLVVKGHIKKLL 578
Query: 516 KAWIDSKEKLSIGIVSPYSAQVVAIQEK--LGSKYVNSAGF----AVKVMSIDGFQGGEE 569
+ + ++ IG+++PYSAQV ++++ LG + +SA +++ ++DGFQG E+
Sbjct: 579 SSGVQPQD---IGVIAPYSAQVQNLKKQMGLGGEVGSSANGDKDGQIEISTVDGFQGREK 635
Query: 570 DLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSV----WEALV 625
++II++ VRSN+ IGFLS +R+NVA+TR + L ++G+ + + + W V
Sbjct: 636 EVIILTLVRSNDSREIGFLSEQRRLNVAMTRPKRQLCVVGDLELMNQSGNKFLQSWSKFV 695
Query: 626 HDAN 629
D N
Sbjct: 696 EDGN 699
Score = 145 (56.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 56/174 (32%), Positives = 91/174 (52%)
Query: 318 FNELNLPSAVEKDLL--EDLLKSFCLKRASLFLST--ASSSYML-HSVAM---EPLNF-- 367
++EL L ++K+L E + + L +A + ++T S SY L +SV E + F
Sbjct: 351 YSELKL---LKKELRQRERKIVNELLVQAQVVVATLHGSGSYELKNSVGTNNNEGIVFDT 407
Query: 368 LVIDEAAQLKESESTIPLQLSG-IKHAVLFGDECQLPAMVESKVSNEAC----------F 416
++IDE +Q E + IPL LS K V+ GD QLP ++++ SN +
Sbjct: 408 IIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPTIKTQKSNSSSPSSSSSSASIL 467
Query: 417 GRSLFERLSYLGYS---KHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRS 467
+LF+RL + K LL +QYRM+ SI FP+ Y+N+++ +VR+ S
Sbjct: 468 ATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQLKCDDSVREIS 521
Score = 103 (41.3 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 11 QSEGVWNETFGPS--LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSM 68
+S G N G + LN SQ QA+ + + I +I GPPGTGKT T+
Sbjct: 203 KSNGTSNNNNGEINFFNDKLNASQRQAIDFAIND------SNITIIHGPPGTGKTYTLIE 256
Query: 69 LLVILLQMKFRTLVCTPTNVAIKELAARV 97
L+ L + LVC P+N+++ + R+
Sbjct: 257 LIQQLTSKGEKVLVCGPSNISVDTILERL 285
>FB|FBgn0033889 [details] [associations]
symbol:CG6701 species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR007087 InterPro:IPR015880
PROSITE:PS00028 SMART:SM00355 GO:GO:0008270 GO:GO:0005622
FlyBase:FBgn0033889 ChiTaRS:CG6701 EMBL:AY128442
ProteinModelPortal:Q8MQQ9 STRING:Q8MQQ9 PRIDE:Q8MQQ9
InParanoid:Q8MQQ9 ArrayExpress:Q8MQQ9 Bgee:Q8MQQ9 Uniprot:Q8MQQ9
Length = 1261
Score = 247 (92.0 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 86/267 (32%), Positives = 134/267 (50%)
Query: 370 IDEAAQLKESEST--IPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL--- 424
+DEAA E+E I LS + +L GD QL +++S+ +NE G +LFERL
Sbjct: 692 VDEAAASTEAEVLMGITCTLSPTLNLILSGDHKQLGPVLQSQRANEWGLGLTLFERLLQR 751
Query: 425 ---------SYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRK--RSYEKRFL 473
SY + L +R HP I N+ +YE +R + + R + +L
Sbjct: 752 KCYQVEEDGSYNASVQTRLIRNFRSHPEIVSLYNNMYYEGHLRTEAPMEIVCRFHNWFYL 811
Query: 474 HGPMYGPYSFINVFGG--REEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS--IGI 529
+ P F +VFG + C N E+ VVM + +L ++ ++ L IGI
Sbjct: 812 PNATF-PIMFHSVFGTTMNTKSSVSLCNNK-EIDVVMDYVKDLMYFGLNGEKLLQTDIGI 869
Query: 530 VSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLS 589
+SPY Q IQE+L + + + S++ FQG E+ +II+S VRS +GFL+
Sbjct: 870 ISPYKNQYQRIQEQLNMRNWSQ----IDCGSVELFQGKEKHVIIVSFVRSFTP-KLGFLN 924
Query: 590 NSKRVNVALTRARHCLWILGNARTLTR 616
N +R+NV L+R L ++GN RTL++
Sbjct: 925 NERRLNVLLSRPISLLILIGNPRTLSQ 951
Score = 96 (38.9 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 36/121 (29%), Positives = 64/121 (52%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV--SMLLVILLQMKFRTL 81
L ST N Q QAV R KA +++GPPGTGKT T+ ++ + + + + L
Sbjct: 537 LIST-NPEQMQAVRQIALSPRL--KAPY-IVFGPPGTGKTSTIVEAIYQLYINRPETHIL 592
Query: 82 VCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKVDSGVEEIYLD 141
V +N A E+A R+++ + ++ + R PL I N +R ++D+ ++++ L+
Sbjct: 593 VLAGSNTACDEVALRLLRAIAKAPQSQPR-----PLTRIFS-ANCDR-RIDN-IDDLLLE 644
Query: 142 Y 142
Y
Sbjct: 645 Y 645
>RGD|1306791 [details] [associations]
symbol:Dna2 "DNA replication helicase 2 homolog (yeast)"
species:10116 "Rattus norvegicus" [GO:0000076 "DNA replication
checkpoint" evidence=ISO;ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003678 "DNA helicase activity"
evidence=ISO;ISS] [GO:0004518 "nuclease activity" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=ISO;ISS]
[GO:0006264 "mitochondrial DNA replication" evidence=IEA;ISO]
[GO:0006284 "base-excision repair" evidence=IEA;ISO] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=IEA;ISO] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISO;ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=ISO;ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISO;ISS] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO;ISS] [GO:0043504 "mitochondrial DNA repair"
evidence=IEA;ISO] [GO:0045740 "positive regulation of DNA
replication" evidence=IEA;ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
RGD:1306791 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0051539 GO:GO:0042645 GO:GO:0016890
GO:GO:0045740 GO:GO:0000729 GO:GO:0017108 GO:GO:0000076
GO:GO:0043137 GO:GO:0005760 GO:GO:0043139 GO:GO:0043142
GO:GO:0033567 GO:GO:0043504 GO:GO:0006264 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 IPI:IPI00368049
ProteinModelPortal:D3ZG52 Ensembl:ENSRNOT00000000438
UCSC:RGD:1306791 OrthoDB:EOG4CZBF7 Uniprot:D3ZG52
Length = 1059
Score = 260 (96.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 90/294 (30%), Positives = 140/294 (47%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS 425
+F ++DEA+Q+ + PL S + VL GD QLP +V ++ + SLF+RL
Sbjct: 757 DFCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFKRLE 814
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSST--------------VRKRSY--- 468
+ L+IQYRM+ I N YE K+ S VR Y
Sbjct: 815 RNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADY 874
Query: 469 -EKRFLHGPMY--GPYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKE 523
+ +L G P F+N E+ N+ E +++ + KA +
Sbjct: 875 SDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSD 934
Query: 524 KLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGG 583
IGI++PY Q+ I + L +S G V+V ++D +QG ++ LI++S VRSN G
Sbjct: 935 ---IGIIAPYRQQLRTITDLLAR---SSVGM-VEVNTVDKYQGRDKSLILVSFVRSNEDG 987
Query: 584 SIG-FLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFN 636
++G L + +R+NVA+TRA+H L +LG+ +L R + E L NA Q N
Sbjct: 988 TLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPL-EKLFDHLNAEQLISN 1040
Score = 123 (48.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 46/164 (28%), Positives = 69/164 (42%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM-------E 363
L K + F L V D+ + + C R+ L+ Y H V
Sbjct: 689 LAKFKIGFLRLGQSHKVHPDIQKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISH 748
Query: 364 PL------NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFG 417
P+ +F ++DEA+Q+ + PL S + VL GD QLP +V ++ +
Sbjct: 749 PMFSRKTFDFCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMS 806
Query: 418 RSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
SLF+RL + L+IQYRM+ I N YE K+ S
Sbjct: 807 ESLFKRLERNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGS 850
Score = 79 (32.9 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 626 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICALVRILSACGFSVLLTSYTH 679
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 680 SAVDNILLKLAK 691
>ZFIN|ZDB-GENE-070424-144 [details] [associations]
symbol:si:ch211-183d5.1 "si:ch211-183d5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR026855 ZFIN:ZDB-GENE-070424-144
GO:GO:0004386 PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AL935128 IPI:IPI00492493 Ensembl:ENSDART00000144897
Uniprot:F1QAI5
Length = 517
Score = 274 (101.5 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 114/374 (30%), Positives = 183/374 (48%)
Query: 309 FVLRKLQSSFNELNLPSAVEKDLLEDLLKSF--CLKRAS--------LFLSTASSSYMLH 358
+++RK ++ F+E + A+EK+L D + ++ LK+A+ + L T SS+ L
Sbjct: 136 YLVRKPENPFSE-EI-KALEKNLSVDQIDNYRKLLKKANQHEIEKYDVVLCTCSSA--LK 191
Query: 359 SVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVE-SKVSNEAC 415
E ++F ++IDE A E E+ IPL + VL GD Q+ +V+ V N+
Sbjct: 192 PELREVMDFRQILIDECAMATEPEAFIPLVSHNPQQIVLLGDHQQIRPIVQCGHVKNKG- 250
Query: 416 FGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSST------VRKRSYE 469
+SLFER Y+ + ++L QYRMH I FP+ FY+ K++ + + K
Sbjct: 251 MEKSLFER--YMDLA-NMLDTQYRMHAEICSFPSDEFYDGKLKTGAERGPCCLLNKSKEP 307
Query: 470 KRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGI 529
L G + G +++ E+ E+S N E + + L K S E I I
Sbjct: 308 TAMLFGHIEGKE--VSLVVSTEKGNENSMANTEEAEQAVCVADLLIKQSGVSPEH--IAI 363
Query: 530 VSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN-------- 581
++PY+AQV I+ L K V + V V ++ QG E +I+STVRS +
Sbjct: 364 LTPYNAQVSEIKMTLEKKNVRN----VTVCTVMKSQGSEWPYVIVSTVRSCSTSDIQAYR 419
Query: 582 --------GGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQC 633
G +GF++++ +VNVA+TRA+ L ILGN+ L R +W+ L+ + C
Sbjct: 420 VRPHKAWLGKRLGFVTDANQVNVAITRAQDGLCILGNS-DLLRCCELWDRLLDHYYRKSC 478
Query: 634 FFN-ADDDKDLGKA 646
N A D + KA
Sbjct: 479 VVNPASDIRVKAKA 492
Score = 52 (23.4 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 48 KATIQLIWGPPGTGKT 63
K +I GPPGTGKT
Sbjct: 14 KKPFTVIQGPPGTGKT 29
Score = 38 (18.4 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 81 LVCTPTNVAIKELAARVVKL 100
L C P+N ++ +A +++KL
Sbjct: 68 LYCGPSNKSVDIVAEQLLKL 87
>ZFIN|ZDB-GENE-091230-8 [details] [associations]
symbol:mov10a "Moloney leukemia virus 10, homolog, a"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 ZFIN:ZDB-GENE-091230-8
GO:GO:0005524 GO:GO:0017111 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 EMBL:CU469362
IPI:IPI00481619 RefSeq:XP_002662576.2 UniGene:Dr.155704
Ensembl:ENSDART00000064826 GeneID:566858 KEGG:dre:566858 CTD:566858
NextBio:20888414 Bgee:E7FAV9 Uniprot:E7FAV9
Length = 1001
Score = 254 (94.5 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 79/248 (31%), Positives = 119/248 (47%)
Query: 404 AMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTV 463
+++E + A + +S + Y L YR HP+I PN FYEN+++ +
Sbjct: 714 SLLERLMKRNALYQKSQDDNSKYDSRFVTKLLRNYRSHPAILKIPNELFYENELQVFANQ 773
Query: 464 RKRSYEKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLY----KA 517
+R ++ H P G P F V G E E S N+ E+ V++ L NL K
Sbjct: 774 MEREAFCQWEHLPRKGFPVVFHGVMGKDEREANSPSFFNVTEIEVIVNYLNNLMQTQGKK 833
Query: 518 WIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTV 577
+ IGI++PY QV I++ L + +KV S++ FQG E +II+STV
Sbjct: 834 GLPKLGPNDIGIIAPYRKQVEKIRKALNTVGELKKWKDIKVGSVEEFQGQERKVIIVSTV 893
Query: 578 RSN-------NGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANA 630
RS+ +IGFLSN KR NVA+TRA+ L ++GN L+ K W+ +
Sbjct: 894 RSSVNYVKMDQDFNIGFLSNEKRFNVAMTRAKGLLIVVGNPVILS-KDPTWQKFIQYCEQ 952
Query: 631 RQCFFNAD 638
Q + D
Sbjct: 953 EQGYTGFD 960
Score = 124 (48.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 57/203 (28%), Positives = 89/203 (43%)
Query: 360 VAMEPLNFLVIDEAAQLKESESTIPLQ--LSGIK-HAVLFGDECQLPAMVESKVSNEACF 416
VAM + IDEA Q E E I + L +K VL GD QL ++ S ++
Sbjct: 652 VAMGHFTHIFIDEAGQAVEPECIIGIAGLLDPLKGQLVLAGDPQQLGPVLRSPLAQLHGL 711
Query: 417 GRSLFERL---------SYLGYSKH------LLSIQYRMHPSISCFPNSYFYENKIRDSS 461
G+SL ERL S SK+ L YR HP+I PN FYEN+++ +
Sbjct: 712 GQSLLERLMKRNALYQKSQDDNSKYDSRFVTKLLRNYRSHPAILKIPNELFYENELQVFA 771
Query: 462 TVRKRSYEKRFLHGPMYG-PYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWID 520
+R ++ H P G P F V G E E + + V+ + ++++N +
Sbjct: 772 NQMEREAFCQWEHLPRKGFPVVFHGVMGKDER--EANSPSFFNVTEI-EVIVNYLNNLMQ 828
Query: 521 SKEKLSIGIVSPYSAQVVAIQEK 543
++ K + + P ++A K
Sbjct: 829 TQGKKGLPKLGPNDIGIIAPYRK 851
Score = 80 (33.2 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 53 LIWGPPGTGKTKTVSMLLVILLQMKFRT--LVCTPTNVAIKELAARVV 98
LI+GPPGTGKT TV + + + K ++ L C P+N A L R++
Sbjct: 538 LIFGPPGTGKTVTVVEAIKQVDKSKAQSHILACAPSNSACDLLCERLL 585
>UNIPROTKB|F1RXR7 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] GO:GO:0007283 GO:GO:0007281
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:BX321913 Ensembl:ENSSSCT00000001066
Uniprot:F1RXR7
Length = 1211
Score = 195 (73.7 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 71/201 (35%), Positives = 96/201 (47%)
Query: 438 YRMHPSISCFPNSYFYENKIR---DSSTVRKR-SYEKRFLHGPMYG-PYSFINVFGGR-E 491
YR H ++ P+ FY ++ D V +EK P G P F V G
Sbjct: 970 YRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEKL----PRKGFPLVFHGVRGTEAR 1025
Query: 492 EFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNS 551
E S N E VM+ L ++ IG+++PY QV EK+ + +
Sbjct: 1026 EGRSPSWFNPTEAVQVMRYCCLLARSVSSQVSAGDIGVITPYRKQV----EKI-KILLRN 1080
Query: 552 AGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGGS------IGFLSNSKRVNVALTRARHC 604
G A VKV S++ FQG E +IIISTVRSN +GFLSNSKR NVA+TR +
Sbjct: 1081 VGLAEVKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKAL 1140
Query: 605 LWILGNARTLTRKKSVWEALV 625
L +LGN L R+ + AL+
Sbjct: 1141 LIVLGNPHVLVRQDPCFGALL 1161
Score = 101 (40.6 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 321 LNLPSAVEKDLLEDLLKSFC-----LKRASLF---LSTASSSYMLHSVAMEPLNF--LVI 370
+N E+ +L D +K +C + RAS F ++T SS+ + + + + +F + +
Sbjct: 825 VNATCRFEETIL-DAIKPYCRDGEDVWRASRFRVVITTCSSAGLFYQIGLRVGHFTHVFV 883
Query: 371 DEAAQLKESESTIPLQL-SGIK-HAVLFGDECQLPAMVESKVSNEACFGRSLFERL 424
DEA Q E E IPL L S I +L GD QL +++S+++ S+ ERL
Sbjct: 884 DEAGQASEPECLIPLGLISDIDGQIILAGDPMQLGPVIKSRLAMAYGLNVSMLERL 939
Score = 89 (36.4 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV--SMLLVILLQMKFRTLVCTP 85
LN++Q AV R + D + +++GPPGTGKT TV ++L V R LVC P
Sbjct: 743 LNENQQLAVK---RILSGDCRPLPYVLFGPPGTGKTVTVIEAVLQVFHALPDSRILVCAP 799
Query: 86 TNVAIKELAARV 97
+N A + R+
Sbjct: 800 SNSAADLVCLRL 811
>UNIPROTKB|E1BMP7 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9913 "Bos taurus" [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISS]
[GO:0043139 "5'-3' DNA helicase activity" evidence=ISS] [GO:0017108
"5'-flap endonuclease activity" evidence=ISS] [GO:0004518 "nuclease
activity" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0000076 "DNA
replication checkpoint" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0045740 "positive regulation of DNA replication"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0042645 GO:GO:0016890 GO:GO:0045740 GO:GO:0000729
GO:GO:0017108 GO:GO:0000076 GO:GO:0043137 EMBL:DAAA02061817
IPI:IPI00688022 NextBio:20878938 GO:GO:0005760 GO:GO:0043139
GO:GO:0043142 GO:GO:0033567 GO:GO:0043504 GO:GO:0006264
PANTHER:PTHR10887:SF14 Uniprot:E1BMP7
Length = 1061
Score = 174 (66.3 bits), Expect = 3.8e-20, Sum P(3) = 3.8e-20
Identities = 47/150 (31%), Positives = 83/150 (55%)
Query: 480 PYSFINVFG--GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQV 537
P F+N E+ + N++E +V+ + KA + IGI++PY Q+
Sbjct: 891 PVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSD---IGIIAPYRQQL 947
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNV 596
I + L +S G V+V ++D +QG ++ ++++S VRSN G++G L + +R+NV
Sbjct: 948 KVISDLLAQ---SSVGM-VEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELLKDWRRLNV 1003
Query: 597 ALTRARHCLWILGNARTLTRKKSVWEALVH 626
A+TRA+H L +LG +L+R + + L H
Sbjct: 1004 AITRAKHKLILLGCVPSLSRYPPLRKLLNH 1033
Score = 128 (50.1 bits), Expect = 3.8e-20, Sum P(3) = 3.8e-20
Identities = 40/144 (27%), Positives = 69/144 (47%)
Query: 327 VEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM---EPL------NFLVIDEAAQLK 377
++K E++ +S +K +L +S ++ + M P+ +F ++DEA+Q+
Sbjct: 709 IQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKTFDFCIVDEASQIS 768
Query: 378 ESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQ 437
+ PL S + VL GD QLP +V ++ + SLF+RL + L++Q
Sbjct: 769 QPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQ 826
Query: 438 YRMHPSISCFPNSYFYENKIRDSS 461
YRM+ I N YE K+ S
Sbjct: 827 YRMNSKIMSLSNKLTYEGKLECGS 850
Score = 80 (33.2 bits), Expect = 3.8e-20, Sum P(3) = 3.8e-20
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 626 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTH 679
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 680 SAVDNILLKLAK 691
>UNIPROTKB|K7DXW3 [details] [associations]
symbol:DNA2 "DNA replication nuclease DNA2" species:9913
"Bos taurus" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 EMBL:DAAA02061817
PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852
Ensembl:ENSBTAT00000003395 Uniprot:K7DXW3
Length = 1137
Score = 174 (66.3 bits), Expect = 4.9e-20, Sum P(3) = 4.9e-20
Identities = 47/150 (31%), Positives = 83/150 (55%)
Query: 480 PYSFINVFG--GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQV 537
P F+N E+ + N++E +V+ + KA + IGI++PY Q+
Sbjct: 967 PVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSD---IGIIAPYRQQL 1023
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNV 596
I + L +S G V+V ++D +QG ++ ++++S VRSN G++G L + +R+NV
Sbjct: 1024 KVISDLLAQ---SSVGM-VEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELLKDWRRLNV 1079
Query: 597 ALTRARHCLWILGNARTLTRKKSVWEALVH 626
A+TRA+H L +LG +L+R + + L H
Sbjct: 1080 AITRAKHKLILLGCVPSLSRYPPLRKLLNH 1109
Score = 128 (50.1 bits), Expect = 4.9e-20, Sum P(3) = 4.9e-20
Identities = 40/144 (27%), Positives = 69/144 (47%)
Query: 327 VEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM---EPL------NFLVIDEAAQLK 377
++K E++ +S +K +L +S ++ + M P+ +F ++DEA+Q+
Sbjct: 785 IQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKTFDFCIVDEASQIS 844
Query: 378 ESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQ 437
+ PL S + VL GD QLP +V ++ + SLF+RL + L++Q
Sbjct: 845 QPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQ 902
Query: 438 YRMHPSISCFPNSYFYENKIRDSS 461
YRM+ I N YE K+ S
Sbjct: 903 YRMNSKIMSLSNKLTYEGKLECGS 926
Score = 80 (33.2 bits), Expect = 4.9e-20, Sum P(3) = 4.9e-20
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 702 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTH 755
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 756 SAVDNILLKLAK 767
>RGD|1304735 [details] [associations]
symbol:Mov10l1 "Mov10l1, Moloney leukemia virus 10-like 1,
homolog (mouse)" species:10116 "Rattus norvegicus" [GO:0007281
"germ cell development" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0007517 "muscle organ development" evidence=ISO]
[GO:0008283 "cell proliferation" evidence=ISO] [GO:0045786
"negative regulation of cell cycle" evidence=ISO] RGD:1304735
GeneTree:ENSGT00550000074391 InterPro:IPR026125
PANTHER:PTHR10887:SF6 IPI:IPI00560261 Ensembl:ENSRNOT00000050620
ArrayExpress:F1M357 Uniprot:F1M357
Length = 550
Score = 180 (68.4 bits), Expect = 9.1e-20, Sum P(3) = 9.1e-20
Identities = 67/194 (34%), Positives = 94/194 (48%)
Query: 438 YRMHPSISCFPNSYFYENKIR---DSSTVRKR-SYEKRFLHGPMYG-PYSFINVFGGR-E 491
YR H ++ P+ FY ++ D V +EK P G P F V G
Sbjct: 337 YRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEKL----PRKGFPLIFHGVRGNEAR 392
Query: 492 EFIEHSCRNMVEVSVVMK---ILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKY 548
E S + E VM+ +L + + SK+ IG+++PY QV I K+ +
Sbjct: 393 EGRSPSWFSPAEAVQVMRYCCLLARNVSSQVSSKD---IGVITPYRKQVEKI--KILLRN 447
Query: 549 VNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGS------IGFLSNSKRVNVALTRAR 602
V+ +KV S++ FQG E +I+ISTVRSN +GFLSNSKR NVA+TR +
Sbjct: 448 VDLTD--IKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPK 505
Query: 603 HCLWILGNARTLTR 616
L +LGN L R
Sbjct: 506 ALLIVLGNPHVLVR 519
Score = 97 (39.2 bits), Expect = 9.1e-20, Sum P(3) = 9.1e-20
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 321 LNLPSAVEKDLLEDLLKSFC-----LKRASLF---LSTASSSYMLHSVAMEPLNF--LVI 370
+N E+ ++E +K +C + RAS F ++T SS+ + + + + F + +
Sbjct: 192 VNATCRFEETIIE-AIKPYCRDGEDIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFV 250
Query: 371 DEAAQLKESESTIPLQL-SGIK-HAVLFGDECQLPAMVESKVSNEACFGRSLFERL 424
DEA Q E E IPL L S I VL GD QL +++S+++ S+ ERL
Sbjct: 251 DEAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERL 306
Score = 89 (36.4 bits), Expect = 9.1e-20, Sum P(3) = 9.1e-20
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV--SMLLVILLQ 75
E F P LN++Q AV R + D + +++GPPGTGKT T+ ++L V
Sbjct: 104 EFFNP----VLNENQKLAVR---RILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYAL 156
Query: 76 MKFRTLVCTPTNVAIKELAARV 97
R LVC P+N A + R+
Sbjct: 157 PDSRILVCAPSNSAADLVCLRL 178
>UNIPROTKB|J9NRI6 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0017108 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852
EMBL:AAEX03002775 EMBL:AAEX03002776 EMBL:AAEX03002777
Ensembl:ENSCAFT00000046272 Uniprot:J9NRI6
Length = 640
Score = 167 (63.8 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 45/135 (33%), Positives = 80/135 (59%)
Query: 509 KILLNLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGG 567
K+++ L +I + K S IGI++PY Q+ I + L +S+ V+V ++D +QG
Sbjct: 497 KLIVFLTSVFIKAGCKPSDIGIIAPYRQQLKIINDLL----FHSSIRMVEVNTVDKYQGR 552
Query: 568 EEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
++ +I++S VRSN G IG L + +R+NVA+TRA+H L +LG +L R + + L+H
Sbjct: 553 DKSIILVSFVRSNKDGPIGELLKDWRRLNVAITRAKHKLILLGCVPSLNRYPPLGK-LLH 611
Query: 627 DANARQCFFNADDDK 641
N+ + + ++
Sbjct: 612 HLNSEKLIMDLPSEE 626
Score = 122 (48.0 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 44/164 (26%), Positives = 75/164 (45%)
Query: 311 LRKLQSSFNELNLPSAVEKDLL----EDLLKSFCLKRASLFLSTASSSYMLHSVAM---E 363
L K + F L V +D+ E++ +S +K +L +S ++ + M
Sbjct: 268 LAKFKIGFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATTCMGINH 327
Query: 364 PL------NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFG 417
P+ +F ++DEA+Q+ + PL S + VL GD QLP +V ++ +
Sbjct: 328 PIFSRKTFDFCIVDEASQISQPICLGPLFFS--QRFVLVGDHQQLPPLVLNREARALGMS 385
Query: 418 RSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
SLF+RL + L++QYRM+ I N Y+ K+ S
Sbjct: 386 ESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYDGKLECGS 429
Score = 80 (33.2 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 205 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYTCGFSVLLTSYTH 258
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 259 SAVDNILLKLAK 270
>MGI|MGI:2443732 [details] [associations]
symbol:Dna2 "DNA replication helicase 2 homolog (yeast)"
species:10090 "Mus musculus" [GO:0000076 "DNA replication
checkpoint" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=ISO]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006264 "mitochondrial DNA
replication" evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0008152
"metabolic process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0032508 "DNA
duplex unwinding" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=ISO] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0043504 "mitochondrial DNA repair" evidence=ISO] [GO:0045740
"positive regulation of DNA replication" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR026851 InterPro:IPR014808
MGI:MGI:2443732 Pfam:PF08696 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0042645 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0000729 GO:GO:0017108 GO:GO:0000076 GO:GO:0043137
GO:GO:0005760 GO:GO:0043139 GO:GO:0043142 GO:GO:0043504
GO:GO:0006264 PANTHER:PTHR10887:SF14 CTD:1763 HOGENOM:HOG000168456
HOVERGEN:HBG081456 KO:K10742 EMBL:AK129051 EMBL:AK028381
EMBL:BC025182 EMBL:BC115716 IPI:IPI00224915 IPI:IPI00816966
RefSeq:NP_796346.2 UniGene:Mm.21492 ProteinModelPortal:Q6ZQJ5
SMR:Q6ZQJ5 STRING:Q6ZQJ5 PaxDb:Q6ZQJ5 PRIDE:Q6ZQJ5
Ensembl:ENSMUST00000092462 Ensembl:ENSMUST00000131422 GeneID:327762
KEGG:mmu:327762 UCSC:uc007fji.2 UCSC:uc007fjj.2
GeneTree:ENSGT00550000074852 InParanoid:Q6ZQJ5 OMA:EHESLCH
ChiTaRS:DNA2 NextBio:397947 Bgee:Q6ZQJ5 CleanEx:MM_DNA2
Genevestigator:Q6ZQJ5 GermOnline:ENSMUSG00000036875 Uniprot:Q6ZQJ5
Length = 1062
Score = 176 (67.0 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 50/156 (32%), Positives = 82/156 (52%)
Query: 480 PYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQV 537
P F+N E+ N+ E +++ + KA + IG+++PY Q+
Sbjct: 892 PVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPSD---IGVIAPYRQQL 948
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNV 596
I + L +S G V+V ++D +QG ++ LI++S VRSN G++G L + +R+NV
Sbjct: 949 RIISDLLAR---SSVGM-VEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNV 1004
Query: 597 ALTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
ALTRA+H L +LG+ +L R + H NA Q
Sbjct: 1005 ALTRAKHKLILLGSVSSLKRFPPLGTLFDH-LNAEQ 1039
Score = 119 (46.9 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 43/164 (26%), Positives = 68/164 (41%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM-------E 363
L K + F L V D+ + + C R+ L+ Y H +
Sbjct: 690 LAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMGINH 749
Query: 364 PL------NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFG 417
P+ +F ++DEA+Q+ + PL S + VL GD QLP +V ++ +
Sbjct: 750 PIFSRKTFDFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMS 807
Query: 418 RSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
SLF+RL + L++QYRM+ I N Y K+ S
Sbjct: 808 ESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGS 851
Score = 78 (32.5 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 627 LNKPQRQAMKRVL--LSKDYT----LIVGMPGTGKTTTICALVRILSACGFSVLLTSYTH 680
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 681 SAVDNILLKLAK 692
Score = 44 (20.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 43/185 (23%), Positives = 69/185 (37%)
Query: 342 KRASLFLSTASSSYMLHSVAME-PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLF---- 396
KR L L ++ +LH V+ P + Q+ E E T S I + L+
Sbjct: 352 KRELLKLRNWLAASLLHRVSRAAPGEEARLSALPQIIEEEKTCKY-CSQIGNCALYSRAV 410
Query: 397 ---GDECQLPAMVESKVSNEACFGRSL-FERLSYLGYSKHLLSIQY------RMHPSISC 446
GD+ +P + SK+ E R L L Y +L+++ + H SI
Sbjct: 411 EEQGDDASIPEAMLSKIQEET---RHLQLAHLKYFSLWCLMLTLESQSKDNRKTHQSIWL 467
Query: 447 FPNSYFYENKIRDSSTVR----KRSYEKRFLHG--PMYGPYSFINVFGGREEFIEHSCRN 500
P S E+ + VR R + ++LH GP N+ G + R
Sbjct: 468 TPASELEESGNCVGNLVRTEPVSRVCDGQYLHNFQRKNGPMPATNLMAGDRIILSGEERK 527
Query: 501 MVEVS 505
+ +S
Sbjct: 528 LFALS 532
>UNIPROTKB|E1BY42 [details] [associations]
symbol:E1BY42 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IEA] [GO:0032797 "SMN complex"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51061 SMART:SM00382 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0051260
GO:GO:0043022 GO:GO:0000049 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 GO:GO:0032797 GeneTree:ENSGT00700000104572
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:AADN02040052 EMBL:AADN02040053
IPI:IPI00595444 Ensembl:ENSGALT00000006901 Uniprot:E1BY42
Length = 976
Score = 281 (104.0 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 104/333 (31%), Positives = 163/333 (48%)
Query: 326 AVEKDLLE--DLLKSFCLKRASLFLST---ASSSYMLHSVAMEPLNFLVIDEAAQLKESE 380
A+ K+L E + + L AS+ L+T ASS L + + +VIDE AQ E+
Sbjct: 321 ALRKELKEREETAMTAALTHASVVLATNTGASSDGPLKLLPENYFDLVVIDECAQALEAS 380
Query: 381 STIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL--SYLGYSKHLLSIQY 438
IPL L K +L GD QLP + S + SL ER+ Y +L++QY
Sbjct: 381 CWIPL-LKAPK-CILAGDHKQLPPTIISHKAAAKGLSLSLMERVIERYGEKVVKMLTVQY 438
Query: 439 RMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYG-----PYSFINVFG-GREE 492
RMH +I + +S Y ++ +V + + L G P I+ G G E
Sbjct: 439 RMHEAIMQWASSEMYGGRLTAHPSVAQHLLKD--LPGVTCTEETTIPLLLIDTAGCGLLE 496
Query: 493 FI---EHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYV 549
E S N EV +V + L A + +++ + +V+PY+ QV ++E L +Y
Sbjct: 497 LEVEDEQSKGNPGEVQLVGLHIQALVDAGVKARD---VAVVAPYNLQVDMLREHLCHRYP 553
Query: 550 NSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILG 609
+++ S+DGFQG E++ +I+S VRSN G +GFL+ +R+NVA+TRAR + I+
Sbjct: 554 E-----LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAIIC 608
Query: 610 NARTLTRKKSVWEALVH---DANARQCFFNADD 639
++RT+ + + L H R F DD
Sbjct: 609 DSRTVGSQAFLGRLLEHFRQHGQVRTAFEYLDD 641
Score = 38 (18.4 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 87 NVAIKELAARVVKLVK 102
NV++KEL R V L+K
Sbjct: 30 NVSLKELQRRGVCLLK 45
>UNIPROTKB|G3X7G5 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] GO:GO:0007283 GO:GO:0007281
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:DAAA02015125 EMBL:DAAA02015122
EMBL:DAAA02015123 EMBL:DAAA02015124 Ensembl:ENSBTAT00000027109
Uniprot:G3X7G5
Length = 1214
Score = 189 (71.6 bits), Expect = 4.6e-19, Sum P(3) = 4.6e-19
Identities = 66/191 (34%), Positives = 89/191 (46%)
Query: 438 YRMHPSISCFPNSYFYENKIR---DSSTVRKR-SYEKRFLHGPMYG-PYSFINVFGGR-E 491
YR H ++ P+ FY ++ D + V +EK P G P F V G
Sbjct: 975 YRSHSALLALPSRLFYHRELEVCADPTVVASLLGWEKL----PRKGFPLIFHGVRGNEAR 1030
Query: 492 EFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNS 551
E S N E VM+ L ++ IG+++PY QV EK+ N
Sbjct: 1031 EGRSPSWFNPAEAVQVMRYCCMLARSVSSQVSARDIGVITPYRKQV----EKIKILLRNV 1086
Query: 552 AGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGS------IGFLSNSKRVNVALTRARHCL 605
+KV S++ FQG E ++IISTVRSN +GFLSNSKR NVA+TR + L
Sbjct: 1087 DLMDIKVGSVEEFQGQEYLVVIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALL 1146
Query: 606 WILGNARTLTR 616
+LGN L R
Sbjct: 1147 IVLGNPHVLVR 1157
Score = 96 (38.9 bits), Expect = 4.6e-19, Sum P(3) = 4.6e-19
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 333 EDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQL-SG 389
ED+ K+ R + ++T SS+ + + + + +F + +DEA Q E E IPL L S
Sbjct: 852 EDVWKA---SRFRVLITTCSSAGLFYQIGLRVGHFTHVFVDEAGQASEPECLIPLGLVSD 908
Query: 390 IK-HAVLFGDECQLPAMVESKVSNEACFGRSLFERL 424
+ VL GD QL +++S+++ S+ ERL
Sbjct: 909 VSGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERL 944
Score = 88 (36.0 bits), Expect = 4.6e-19, Sum P(3) = 4.6e-19
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV--SMLLVILLQMKFRTLVCTP 85
LN++Q AV R + D + +++GPPGTGKT T+ ++L V R LVC P
Sbjct: 748 LNENQKLAVR---RILSGDCRPIPYVLFGPPGTGKTVTIIEAILQVFHALPDSRILVCAP 804
Query: 86 TNVAIKELAARV 97
+N A + R+
Sbjct: 805 SNSAADLVCLRL 816
Score = 51 (23.0 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 93 LAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKVDSGVEEIYL-DY 142
LAA+VV DC + PLG L+ G+ RLK GV Y DY
Sbjct: 4 LAAKVVSFFWRKA--DCPEEEAGPLGPELVEGDT-RLKTVQGVVTRYCSDY 51
>UNIPROTKB|Q9BXT6 [details] [associations]
symbol:MOV10L1 "Putative helicase Mov10l1" species:9606
"Homo sapiens" [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0007283 "spermatogenesis" evidence=IEP]
[GO:0005524 "ATP binding" evidence=TAS] [GO:0000287 "magnesium ion
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0007281 "germ cell development" evidence=IEP] [GO:0005622
"intracellular" evidence=IC] GO:GO:0007275 GO:GO:0005524
GO:GO:0000287 GO:GO:0007283 GO:GO:0003723 GO:GO:0005622
GO:GO:0007281 eggNOG:COG1112 GO:GO:0004004 EMBL:AL022328
EMBL:AF285604 EMBL:AK000033 EMBL:AK090740 EMBL:CR456466
EMBL:AL034546 EMBL:BC150137 EMBL:BC152539 EMBL:AL133068
IPI:IPI00005638 IPI:IPI00178391 IPI:IPI00215671 IPI:IPI00853536
PIR:T42668 RefSeq:NP_001157576.1 RefSeq:NP_001157577.1
RefSeq:NP_001157578.1 RefSeq:NP_061868.1 UniGene:Hs.62880
ProteinModelPortal:Q9BXT6 SMR:Q9BXT6 STRING:Q9BXT6
PhosphoSite:Q9BXT6 DMDM:22095856 PaxDb:Q9BXT6 PeptideAtlas:Q9BXT6
PRIDE:Q9BXT6 DNASU:54456 Ensembl:ENST00000262794
Ensembl:ENST00000354853 Ensembl:ENST00000395843
Ensembl:ENST00000395852 Ensembl:ENST00000395858
Ensembl:ENST00000545383 GeneID:54456 KEGG:hsa:54456 UCSC:uc003bjj.3
UCSC:uc003bjl.3 UCSC:uc003bjm.1 CTD:54456 GeneCards:GC22P050528
HGNC:HGNC:7201 HPA:HPA019034 MIM:605794 neXtProt:NX_Q9BXT6
PharmGKB:PA30909 HOVERGEN:HBG052382 InParanoid:Q9BXT6 KO:K13983
OMA:NMSGVTL OrthoDB:EOG49GKFV PhylomeDB:Q9BXT6 GenomeRNAi:54456
NextBio:56697 ArrayExpress:Q9BXT6 Bgee:Q9BXT6 CleanEx:HS_MOV10L1
Genevestigator:Q9BXT6 GermOnline:ENSG00000073146 InterPro:IPR026125
PANTHER:PTHR10887:SF6 Uniprot:Q9BXT6
Length = 1211
Score = 184 (69.8 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 69/192 (35%), Positives = 92/192 (47%)
Query: 438 YRMHPSISCFPNSYFYENKIR---DSSTVRKR-SYEKRFLHGPMYG-PYSFINVFGGR-E 491
YR H ++ P+ FY ++ D + V +EK P G P F V G
Sbjct: 972 YRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKL----PKKGFPLIFHGVRGSEAR 1027
Query: 492 EFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVN 550
E S N E V++ L + I S+ S IG+++PY QV EK+ N
Sbjct: 1028 EGKSPSWFNPAEAVQVLRYCCLLAHS-ISSQVSASDIGVITPYRKQV----EKIRILLRN 1082
Query: 551 SAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGS------IGFLSNSKRVNVALTRARHC 604
+KV S++ FQG E +IIISTVRSN +GFLSNSKR NVA+TR +
Sbjct: 1083 VDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKAL 1142
Query: 605 LWILGNARTLTR 616
L +LGN L R
Sbjct: 1143 LIVLGNPHVLVR 1154
Score = 99 (39.9 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 333 EDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQL-SG 389
ED+ K+ R + ++T SSS + + + + +F + +DEA Q E E IPL L S
Sbjct: 849 EDIWKA---SRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSD 905
Query: 390 IK-HAVLFGDECQLPAMVESKVSNEACFGRSLFERL 424
I VL GD QL +++S+++ S ERL
Sbjct: 906 ISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERL 941
Score = 90 (36.7 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV--SMLLVILLQ 75
E F P LN++Q AV R + D + +++GPPGTGKT T+ ++L V
Sbjct: 739 EFFNP----VLNENQKLAVK---RILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFAL 791
Query: 76 MKFRTLVCTPTNVAIKELAARV 97
R LVC P+N A + R+
Sbjct: 792 PDSRILVCAPSNSAADLVCLRL 813
>RGD|1306056 [details] [associations]
symbol:Pric285 "peroxisomal proliferator-activated receptor A
interacting complex 285" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 RGD:1306056 GO:GO:0005524
GO:GO:0003723 GO:GO:0004386 GO:GO:0004540 PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 IPI:IPI00567928 RefSeq:XP_001057758.2
RefSeq:XP_230961.5 UniGene:Rn.47450 ProteinModelPortal:D4ADC2
Ensembl:ENSRNOT00000017787 GeneID:296474 KEGG:rno:296474
UCSC:RGD:1306056 CTD:296474 OrthoDB:EOG4Q84WM NextBio:641262
ArrayExpress:D4ADC2 Uniprot:D4ADC2
Length = 2944
Score = 247 (92.0 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 102/326 (31%), Positives = 152/326 (46%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQ-LSGIKHA 393
+ + L+R S+ L T S + S +++ LN ++IDEA E E+ IPL S +
Sbjct: 2622 RKYELERHSVILCTCSCAA---SGSLKALNVRQILIDEAGMATEPETLIPLVCFSKTEKV 2678
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFY 453
VL GD QL +V+++ RSLFER +L QYRMH I FP+ FY
Sbjct: 2679 VLLGDHKQLRPVVKNEQLRNLGMDRSLFERYHR---DAIMLDTQYRMHKDICSFPSMEFY 2735
Query: 454 ENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFG-------GREEFIEHSCRNMVEVSV 506
K++ S + KR G P F +V G EE E+S N EV+
Sbjct: 2736 GGKLKTWSDL-KRPPSLLGHVGKQSCPVIFGSVQGYEQKLLVSTEEGNENSRANPEEVTE 2794
Query: 507 VMKILLNL-YKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQ 565
V++I+ L +D K+ + +++PY+AQ AI L + V V V SI Q
Sbjct: 2795 VVRIIKQLTLDRTVDPKD---VAVLTPYNAQAAAISRGLMQRGVTG----VTVTSITKSQ 2847
Query: 566 GGEEDLIIISTVRSNNGGS-------------IGFLSNSKRVNVALTRARHCLWILGNAR 612
G E +I+STVR+ +GF+ + +VNVA+TRA+ L I+G+
Sbjct: 2848 GSEWRYVIVSTVRTCPRSDMDQRPTKSWLKKFLGFVVDPHQVNVAITRAQEGLCIIGD-H 2906
Query: 613 TLTRKKSVWEALVHDANARQCFFNAD 638
L R +W L+ A+ A+
Sbjct: 2907 LLLRCCPLWHRLLGFCEAQNSLVPAE 2932
Score = 173 (66.0 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 84/322 (26%), Positives = 142/322 (44%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLS-GIKHAVLFGDE 399
L R L ++T S + L V + + IDEAAQ+ E E+ IPL + + VL GD
Sbjct: 883 LLRHRLVVTTTSQARELQ-VPAGFFSHIFIDEAAQMLECEALIPLSYALTLTRVVLAGDH 941
Query: 400 CQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSI----------QYRMHPSISCFPN 449
Q+ + S V + G L RL +L Y + + I YR +I F +
Sbjct: 942 MQVTPRLFS-VPRDKAAGHMLLHRL-FLYYQQEVHKIAQHSRIVFHENYRSTAAIINFVS 999
Query: 450 SYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEH-SCRNMVEVSVVM 508
+FY K + ++ R H P + P F +V G E+ + S N EV+ V+
Sbjct: 1000 RHFYVAK---GNPIQASGKVPR--H-PQHYPLMFCHVAGSPEQDMSRTSWLNSAEVTQVV 1053
Query: 509 KILLNLYKAWIDS---KEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQ 565
+ + +Y W +E+ I VS + AQV A++++L + + V V S +
Sbjct: 1054 EKVQEIYNTWPHCWGPREQRHICAVS-HGAQVSALRQELRRRNLGE----VSVGSFEILP 1108
Query: 566 GGEEDLIIISTVRSNN-----GGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTRK-- 617
G E ++++S+V + N G F + + +N +TRA+ L +G+A L
Sbjct: 1109 GREFRVVVLSSVHNRNSLLSPGAPTSEFFTEPRVLNTVMTRAQSQLVAVGDAVALCSSGA 1168
Query: 618 -KSVWEALVHDANARQCFFNAD 638
+ +W+ + + F D
Sbjct: 1169 CRKLWKNFIRECIEHHSIFPED 1190
Score = 84 (34.6 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 53 LIWGPPGTGKTKTVSML-LVILLQMKFRTLVCTPTNVA 89
LI+GP GTGKT T++M L ++ Q + L+CT TN A
Sbjct: 786 LIYGPFGTGKTYTLAMAALEVVQQPHTKVLICTHTNSA 823
Score = 62 (26.9 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKT 63
LN SQ +AV S L++ +I GPPGTGKT
Sbjct: 2447 LNQSQDKAVRSALQKQ-------FTVIQGPPGTGKT 2475
Score = 47 (21.6 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 876 DEQLEMILSPRSTFILGRSGTGKTTV 901
D+ + L + T I G GTGKT V
Sbjct: 2452 DKAVRSALQKQFTVIQGPPGTGKTVV 2477
>UNIPROTKB|E1BZJ8 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:AADN02050039 EMBL:AADN02050037
EMBL:AADN02050038 IPI:IPI00585215 Ensembl:ENSGALT00000013959
ArrayExpress:E1BZJ8 Uniprot:E1BZJ8
Length = 1192
Score = 175 (66.7 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 67/218 (30%), Positives = 102/218 (46%)
Query: 438 YRMHPSISCFPNSYFYENKIR---DSSTVRKRSYEKRFLHGPMYG-PYSFINVFGGREEF 493
YR H ++ P+ FY ++ D+S V + ++ P G P F V G+E
Sbjct: 979 YRSHSALLALPSKLFYHKELEVCADTSVVSSLLHWEKL---PRKGFPLIFHGV-RGKETR 1034
Query: 494 IEHSCR--NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNS 551
HS N E VM+ +L K + IG+++PY QV I+ L S ++
Sbjct: 1035 EGHSPSWFNPTEAVQVMQYCCHLAKNESIAVSVTDIGVITPYRKQVEKIKFLLRSIDLSD 1094
Query: 552 AGFAVKVMSIDGFQGGEEDLIIISTVRSNNGG------SIGFLSNSKRVNVALTRARHCL 605
+KV +++ FQG E + I+STVRS +GFLSN KR NVA+TRA+ L
Sbjct: 1095 ----IKVGTVEEFQGQECMVTILSTVRSYEDTFAEEEYCLGFLSNPKRFNVAITRAKALL 1150
Query: 606 WILGNARTLTRKKSVWEALVHDANARQCFFNADDDKDL 643
++GN L K + AL+ + + D +L
Sbjct: 1151 IVIGNPHLLV-KDPCFCALLEYSLMNNAYIGCDLPSEL 1187
Score = 100 (40.3 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 33/105 (31%), Positives = 56/105 (53%)
Query: 332 LEDLLKSFC-----LKRASLF---LSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESES 381
++D++K +C + +A F ++T SS+ M + +F +++DEA Q E ES
Sbjct: 844 IDDIVKPYCKDGDDIWKAVWFRIIITTCSSAGMFYQTGTRLGHFTHVILDEAGQASEPES 903
Query: 382 TIPLQL-SGIK-HAVLFGDECQLPAMVESKVSNEACFGRSLFERL 424
IP+ L S + VL GD QL +++S+++ SL ERL
Sbjct: 904 LIPIGLISEVNGQIVLVGDPKQLGPLIKSRIAVAFGLNISLLERL 948
Score = 97 (39.2 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 35/101 (34%), Positives = 50/101 (49%)
Query: 3 ETCELCSMQSEGV-WNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTG 61
ET +L ++E + W G + LN Q AV L C + T +++GPPGTG
Sbjct: 729 ETSQLVE-ETETIKWRA--GEFFNPMLNKQQKLAVKRILSG-EC--RPTPYILFGPPGTG 782
Query: 62 KTKTVSMLLVILLQMKF-----RTLVCTPTNVAIKELAARV 97
KT TV + +LQ+ F R LVC P+N A + R+
Sbjct: 783 KTITV---VEAILQIHFTLPDSRILVCAPSNAATDLICLRL 820
Score = 37 (18.1 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 1 VDETCELCSMQSEGVWNETFGPSLSSTLNDSQAQAVLSCLRQMR 44
VD+ E CS Q + T +T N + A+ L R
Sbjct: 621 VDDGLEQCSRQESEIVTNTESNQSKNTGNFMTSDAIKLTLPSRR 664
>UNIPROTKB|Q9BYK8 [details] [associations]
symbol:HELZ2 "Helicase with zinc finger domain 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] Reactome:REACT_111217
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 PROSITE:PS50157
SMART:SM00355 SMART:SM00382 SMART:SM00955 GO:GO:0005524
Reactome:REACT_111045 GO:GO:0005654 GO:GO:0044281 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0044255
GO:GO:0006351 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
GO:GO:0030374 eggNOG:COG0557 InterPro:IPR022966 EMBL:AL121829
EMBL:AF517673 EMBL:AB201715 EMBL:AB051556 EMBL:AK074171
EMBL:AK055611 IPI:IPI00249304 IPI:IPI00249305 IPI:IPI00736631
RefSeq:NP_001032412.2 RefSeq:NP_208384.3 UniGene:Hs.517180
ProteinModelPortal:Q9BYK8 IntAct:Q9BYK8 STRING:Q9BYK8
PhosphoSite:Q9BYK8 DMDM:209572784 PaxDb:Q9BYK8 PRIDE:Q9BYK8
GeneID:85441 KEGG:hsa:85441 UCSC:uc002yfl.1 UCSC:uc002yfm.2
CTD:85441 GeneCards:GC20M062189 HGNC:HGNC:30021 HPA:HPA051267
MIM:611265 neXtProt:NX_Q9BYK8 HOGENOM:HOG000231856
HOVERGEN:HBG080465 InParanoid:Q9BYK8 OMA:FRAAHIM PhylomeDB:Q9BYK8
GenomeRNAi:85441 NextBio:76020 ArrayExpress:Q9BYK8 Bgee:Q9BYK8
Genevestigator:Q9BYK8 GermOnline:ENSG00000130589
PANTHER:PTHR10887:SF16 Uniprot:Q9BYK8
Length = 2649
Score = 246 (91.7 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 94/317 (29%), Positives = 149/317 (47%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPL-QLSGIKHAVL 395
+ F L R + L T S + S+ + + +++DEA E E+ IPL Q + VL
Sbjct: 2327 RKFELDRHEVILCTCSCAASA-SLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVVL 2385
Query: 396 FGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYEN 455
GD QL +V+++ RSLFER H+L QYRMH I FP+ FY++
Sbjct: 2386 LGDHKQLRPVVKNERLQNLGLDRSLFERYHE---DAHMLDTQYRMHEGICAFPSVAFYKS 2442
Query: 456 KIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFI-------EHSCRNMVEVSVVM 508
K++ +R+ G P F +V G + E+S N+ EV+ V+
Sbjct: 2443 KLKTWQGLRRPPSVLGHA-GKESCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEVV 2501
Query: 509 KILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGE 568
+I L + E I +++PY+AQ I + L + + AG AV SI QG E
Sbjct: 2502 RITKQLTLG--RTVEPQDIAVLTPYNAQASEISKALRREGI--AGVAVS--SITKSQGSE 2555
Query: 569 EDLIIISTVRSNNGGSI-------------GFLSNSKRVNVALTRARHCLWILGNARTLT 615
+++STVR+ + GF+ + +VNVA+TRA+ L ++G+ L
Sbjct: 2556 WRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD-HLLL 2614
Query: 616 RKKSVWEALVHDANARQ 632
R +W +L+ A+Q
Sbjct: 2615 RCCPLWRSLLDFCEAQQ 2631
Score = 162 (62.1 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 81/315 (25%), Positives = 149/315 (47%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGI-KHAVLFGDE 399
L R + ++T S + L V + + ++IDEAAQ+ E E+ PL + VL GD
Sbjct: 638 LARHRVVVTTTSQARELR-VPVGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDH 696
Query: 400 CQLPAMVESKVSNEACFGRSLFERLSYLGYSK--HLLSIQYRM--HPSISC------FPN 449
Q+ + S V+ +L RL +L Y + H ++ Q R+ H + C F +
Sbjct: 697 MQVTPRLFS-VARARAAEHTLLHRL-FLCYQQETHEVARQSRLVFHENYRCTDAIVSFIS 754
Query: 450 SYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEH-SCRNMVEVSVVM 508
+FY K + + R K H P + P F +V G + + S N+ E++ V+
Sbjct: 755 RHFYVAK---GNPIHARG--KVPPH-PRHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVV 808
Query: 509 KILLNLYKAWID---SKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQ 565
+ + Y W +E+ I +VS + AQV A++++L + + V V S +
Sbjct: 809 EKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQELRRRDLGQ----VSVGSFEILP 863
Query: 566 GGEEDLIIISTVRSNNG----GSIG--FLSNSKRVNVALTRARHCLWILGNARTLTRKKS 619
G + ++++STV + G++ F ++++ +N LTRA+ L ++G+A L +
Sbjct: 864 GRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVALCSFGA 923
Query: 620 ---VWEALVHDANAR 631
+WE+ + + R
Sbjct: 924 CGKLWESFIRECVER 938
Score = 83 (34.3 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 53 LIWGPPGTGKTKTVSML-LVILLQMKFRTLVCTPTNVA 89
LI+GP GTGKT T++M L ++ + + + L+CT TN A
Sbjct: 541 LIYGPFGTGKTYTLAMASLEVIRRPETKVLICTHTNSA 578
Score = 55 (24.4 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 7 LCSM-QSEGVWNETFG-PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKT 63
LC + S + +T+ P LN SQ AV L + +I GPPGTGKT
Sbjct: 2130 LCRVIPSRFLERQTYNIPGGRHKLNPSQNVAVREALEK-------PFTVIQGPPGTGKT 2181
Score = 39 (18.8 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 888 TFILGRSGTGKTTV 901
T I G GTGKT V
Sbjct: 2170 TVIQGPPGTGKTIV 2183
>UNIPROTKB|E1C0Z0 [details] [associations]
symbol:HELZ2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR007087 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 SMART:SM00355
SMART:SM00955 GO:GO:0008270 GO:GO:0003723 GO:GO:0005622
GO:GO:0004386 GO:GO:0004540 OMA:FRAAHIM PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 EMBL:AADN02019144 IPI:IPI00594758
Ensembl:ENSGALT00000009906 Uniprot:E1C0Z0
Length = 2565
Score = 238 (88.8 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 101/321 (31%), Positives = 152/321 (47%)
Query: 346 LFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIKHA---VLFGDEC 400
+ L T SS+ + ++E LN ++IDE A E E+ IPL +S KHA VL GD
Sbjct: 2252 VILCTCSSA---SAGSLEKLNVKQILIDECAMSTEPETLIPL-VSH-KHAEKVVLLGDHK 2306
Query: 401 QLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDS 460
QL +V + SLFER + +L QYRMH +I FP+ FYE++++
Sbjct: 2307 QLKPVVNNDFCKSLGMETSLFERYQKQAW---MLDTQYRMHKNICEFPSQEFYEHRLKTC 2363
Query: 461 -STVRKRS--YEKR-----FLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILL 512
+R S Y K + G + G + + EE E+S N EV ++
Sbjct: 2364 PQLLRIPSVLYHKNNRCCPIIFGHVEGKEQSLVI--STEEGNENSKANPEEVEQAVRTAK 2421
Query: 513 NLYKAWIDSKEK-LSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDL 571
L +D + SI I+SPY+AQV I ++L + + V V +I QG E
Sbjct: 2422 QLT---LDGTIRPQSIAILSPYNAQVSEINKRLLKEGIRG----VTVCTIMKSQGSEWRY 2474
Query: 572 IIISTVRSNNGGSI-------------GFLSNSKRVNVALTRARHCLWILGNARTLTRKK 618
+I+STVRS + I GF+++ +VNVA+TRA+ L I+GN R L
Sbjct: 2475 VILSTVRSCSRHEIDKKPTKSWQKKHLGFVTDPNQVNVAITRAQEGLCIIGN-RYLLECN 2533
Query: 619 SVWEALVHDANARQCFFNADD 639
+W L+ C+ + +
Sbjct: 2534 PLWRRLLQHYIDHNCYTSGQE 2554
Score = 154 (59.3 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 77/308 (25%), Positives = 140/308 (45%)
Query: 346 LFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIK-HAVLFGDECQLPA 404
+ ++T+ S L VA ++IDEAAQ+ E E+ IPL + + VL GD Q+
Sbjct: 640 IIITTSMLSKHL-KVAPGYFTHIMIDEAAQMLECEALIPLSYATFETRIVLAGDHMQITP 698
Query: 405 MVESKVSNEACFGRSLFERL-SYLGYSKHLLSIQ--------YRMHPSISCFPNSYFY-- 453
+ ++ + +L RL + KH ++++ YR I F + +FY
Sbjct: 699 KLFCVADGQSAY-HTLLNRLFQFYQKEKHEVAMKSRIIFNENYRSTAGIIEFVSKHFYIG 757
Query: 454 -ENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEH-SCRNMVEVSVVMKIL 511
N I S + H +Y P F +V G E + S N E++ V++ +
Sbjct: 758 KGNAIHASGNIPP--------HPEIY-PLMFCHVPGVAERDMSMISWHNASEITQVVEKV 808
Query: 512 LNLYKAWID---SKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGE 568
+Y+ W ++++ I +VS + QV AI+++L K + V V + + G E
Sbjct: 809 EEIYQRWPHEWGAQDQKRICVVS-HGVQVSAIRQELRKKQLPE----VVVENYENLPGRE 863
Query: 569 EDLIIISTVRSNNGGSIG------FLSNSKRVNVALTRARHCLWILGNARTLTRK---KS 619
+IIISTV ++ + F + ++ +N +TRA+ + ++G+A L
Sbjct: 864 FRVIIISTVHTSESLRVSASHNHEFFNEARVLNTIMTRAQSQVIVVGDAVALCSHGQCSK 923
Query: 620 VWEALVHD 627
VW+ + +
Sbjct: 924 VWKRFIQE 931
Score = 90 (36.7 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSML-LVILLQMKFRTLVCTPTN 87
N Q A+ Q + LI+GP GTGKT T++M L ++ Q R L+CT TN
Sbjct: 514 NSKQKLAISFIAGQATSRRQVPPLLIYGPFGTGKTFTLAMATLEVIRQPNTRVLICTHTN 573
Query: 88 VA 89
A
Sbjct: 574 SA 575
Score = 67 (28.6 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKT 63
P LN SQ +AVL+ L + LI GPPGTGKT
Sbjct: 2062 PGSQRKLNPSQNKAVLNALTK-------PFTLIQGPPGTGKT 2096
Score = 46 (21.3 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 888 TFILGRSGTGKTTVLTRKLFQKEELHRMA 916
T I G GTGKT V T ++ +L+ A
Sbjct: 2085 TLIQGPPGTGKTVVGTHIVYWFHKLNEEA 2113
Score = 39 (18.8 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 226 AAPLRSCIFNFCTRIPKCYIG 246
A PL F C+R C +G
Sbjct: 78 APPLGLSTFKLCSRAEVCEMG 98
>MGI|MGI:1891384 [details] [associations]
symbol:Mov10l1 "Moloney leukemia virus 10-like 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007517 "muscle organ development" evidence=IDA]
[GO:0008283 "cell proliferation" evidence=IDA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0045786 "negative regulation
of cell cycle" evidence=IDA] MGI:MGI:1891384 GO:GO:0005524
GO:GO:0005737 GO:GO:0008283 GO:GO:0007283 GO:GO:0007517
GO:GO:0004386 eggNOG:COG1112 GO:GO:0045786 CTD:54456
HOVERGEN:HBG052382 KO:K13983 InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:AF285587 EMBL:AF340211 EMBL:AY303754
EMBL:AK084786 IPI:IPI00118099 IPI:IPI00227971 IPI:IPI00453884
RefSeq:NP_112550.2 UniGene:Mm.358791 ProteinModelPortal:Q99MV5
SMR:Q99MV5 STRING:Q99MV5 PhosphoSite:Q99MV5 PaxDb:Q99MV5
PRIDE:Q99MV5 DNASU:83456 GeneID:83456 KEGG:mmu:83456
HOGENOM:HOG000015363 InParanoid:Q99MV5 NextBio:350584
CleanEx:MM_MOV10L1 Genevestigator:Q99MV5
GermOnline:ENSMUSG00000015365 Uniprot:Q99MV5
Length = 1187
Score = 183 (69.5 bits), Expect = 9.0e-19, Sum P(3) = 9.0e-19
Identities = 66/191 (34%), Positives = 90/191 (47%)
Query: 438 YRMHPSISCFPNSYFYENKIR---DSSTVRKR-SYEKRFLHGPMYG-PYSFINVFGGR-E 491
YR H ++ P+ FY ++ D V +EK P G P F V G
Sbjct: 974 YRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEKL----PRKGFPLIFHGVRGNEAR 1029
Query: 492 EFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNS 551
E S + E VM+ L ++ IG+++PY QV I K+ + V+
Sbjct: 1030 EGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKI--KILLRNVDL 1087
Query: 552 AGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGS------IGFLSNSKRVNVALTRARHCL 605
+KV S++ FQG E +I+ISTVRSN +GFLSNSKR NVA+TR + L
Sbjct: 1088 TD--IKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALL 1145
Query: 606 WILGNARTLTR 616
ILGN L R
Sbjct: 1146 IILGNPHVLVR 1156
Score = 98 (39.6 bits), Expect = 9.0e-19, Sum P(3) = 9.0e-19
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 321 LNLPSAVEKDLLEDLLKSFC-----LKRASLF---LSTASSSYMLHSVAMEPLNF--LVI 370
+N E+ ++ D +K +C + RAS F ++T SS+ + + + + F + +
Sbjct: 829 VNATCRFEETII-DAIKPYCRDGEDIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFV 887
Query: 371 DEAAQLKESESTIPLQL-SGIK-HAVLFGDECQLPAMVESKVSNEACFGRSLFERL 424
DEA Q E E IPL L S I VL GD QL +++S+++ S+ ERL
Sbjct: 888 DEAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERL 943
Score = 89 (36.4 bits), Expect = 9.0e-19, Sum P(3) = 9.0e-19
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV--SMLLVILLQ 75
E F P LN++Q AV R + D + +++GPPGTGKT T+ ++L V
Sbjct: 741 EFFNP----VLNENQKLAVR---RILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYAL 793
Query: 76 MKFRTLVCTPTNVAIKELAARV 97
R LVC P+N A + R+
Sbjct: 794 PDSRILVCAPSNSAADLVCLRL 815
Score = 48 (22.0 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 34/161 (21%), Positives = 64/161 (39%)
Query: 55 WGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESVERDCRDALF 114
W P + +T + V++ K + P+ + + R+ K V++ + D L
Sbjct: 402 WKKPKSSQTLVSAKTTVVVTTQKRNSRRQLPSFLPQYPIPDRLKKCVEQKI-----DILT 456
Query: 115 F-PL-GDILLLGN-NERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNC 171
F PL ++L + N E+ +EEI+ + +K L V L
Sbjct: 457 FQPLLAELLNMSNYKEKFSTLLWLEEIHAEIELKEYNMSRVVLKRKGDLLVLEVPGLAE- 515
Query: 172 VSLYHTYIDNESMKQSEDINGDIIKEKECGKEADVSDVEIK 212
S Y ++ + +S++ NG +I+ E DV +K
Sbjct: 516 -SRPSLYAGDKLILKSQEYNGHVIEYIGYVMEIHEEDVTLK 555
>UNIPROTKB|F6UZP1 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 OMA:EHESLCH Ensembl:ENSCAFT00000021752
EMBL:AAEX03002775 EMBL:AAEX03002776 EMBL:AAEX03002777
Uniprot:F6UZP1
Length = 1021
Score = 166 (63.5 bits), Expect = 9.8e-19, Sum P(3) = 9.8e-19
Identities = 45/126 (35%), Positives = 77/126 (61%)
Query: 509 KILLNLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGG 567
K+++ L +I + K S IGI++PY Q+ I + L +S+ V+V ++D +QG
Sbjct: 886 KLIVFLTSVFIKAGCKPSDIGIIAPYRQQLKIINDLL----FHSSIRMVEVNTVDKYQGR 941
Query: 568 EEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
++ +I++S VRSN G IG L + +R+NVA+TRA+H L +LG +L R + + L+H
Sbjct: 942 DKSIILVSFVRSNKDGPIGELLKDWRRLNVAITRAKHKLILLGCVPSLNRYPPLGK-LLH 1000
Query: 627 DANARQ 632
N+ +
Sbjct: 1001 HLNSEK 1006
Score = 122 (48.0 bits), Expect = 9.8e-19, Sum P(3) = 9.8e-19
Identities = 44/164 (26%), Positives = 75/164 (45%)
Query: 311 LRKLQSSFNELNLPSAVEKDLL----EDLLKSFCLKRASLFLSTASSSYMLHSVAM---E 363
L K + F L V +D+ E++ +S +K +L +S ++ + M
Sbjct: 657 LAKFKIGFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATTCMGINH 716
Query: 364 PL------NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFG 417
P+ +F ++DEA+Q+ + PL S + VL GD QLP +V ++ +
Sbjct: 717 PIFSRKTFDFCIVDEASQISQPICLGPLFFS--QRFVLVGDHQQLPPLVLNREARALGMS 774
Query: 418 RSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
SLF+RL + L++QYRM+ I N Y+ K+ S
Sbjct: 775 ESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYDGKLECGS 818
Score = 80 (33.2 bits), Expect = 9.8e-19, Sum P(3) = 9.8e-19
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 594 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYTCGFSVLLTSYTH 647
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 648 SAVDNILLKLAK 659
>FB|FBgn0034187 [details] [associations]
symbol:CG6967 species:7227 "Drosophila melanogaster"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] UCSC:CG6967-RC
FlyBase:FBgn0034187 NextBio:801049 EMBL:AY119610
ProteinModelPortal:Q8MRI1 PRIDE:Q8MRI1 InParanoid:Q8MRI1
PhylomeDB:Q8MRI1 ArrayExpress:Q8MRI1 Bgee:Q8MRI1 Uniprot:Q8MRI1
Length = 825
Score = 231 (86.4 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 99/356 (27%), Positives = 162/356 (45%)
Query: 334 DLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF---LVIDEAAQLKESESTIPLQLSGI 390
D +K+ + + + ++T + L + + NF + IDEA E E+ I + GI
Sbjct: 437 DHIKASRIVKYGIIVATLCTVARLVTDTLGRYNFFTHIFIDEAGASTEPEALIGIM--GI 494
Query: 391 K-----HAVLFGDECQLPAMVESKVSNEACFGRSLFERL----SYLG-----YSKHL--- 433
K H +L GD QL A+++S + RSL ERL Y Y ++
Sbjct: 495 KQTADCHVILSGDHKQLGAVIKSNRAASLGLSRSLMERLLQSDCYKSDENGNYDRNRQMR 554
Query: 434 LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF--LHGPMYGPYSFINVFG--G 489
L YR HP I N +Y +++ + + + L P + P F G
Sbjct: 555 LCRNYRSHPQIVRLFNELYYNGELKAQAPAMDVNLAANWSVLTNPQF-PIIFQATHGVTN 613
Query: 490 REEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYV 549
RE+ S N+ E V+ + L + +E +GIV+PY+AQ KL +K +
Sbjct: 614 REQNSTSSYNNL-EAEVICWYVKRLINDRVVGQE--DVGIVAPYTAQ-----GKLVTKLL 665
Query: 550 NSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWIL 608
S G+ V+V S++ +QG E+ +II S V+S ++GF+ N +RVNV L+RA+ L ++
Sbjct: 666 QSKGYPNVEVGSVETYQGREKTIIIASLVKSFT--NMGFMCNPRRVNVLLSRAKALLILV 723
Query: 609 GNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAILAVKKXXXXXXXXXNPE 664
GN TL R S ++ ++++ + D IL +K PE
Sbjct: 724 GNPVTL-RHHSDFKFVINECKKHGTYLLKKRDSGQRPHIL-IKADESNEESSSEPE 777
Score = 84 (34.6 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 53 LIWGPPGTGKTKTV--SMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESV 105
+++GPPGTGKT T+ ++L + L Q + R LV +N A +A ++ + ++ ++
Sbjct: 333 ILFGPPGTGKTTTIVEAILQLRLQQPQSRILVTAGSNSACDTIALKLCEYIESNI 387
>UNIPROTKB|E2RBM4 [details] [associations]
symbol:PRIC285 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AAEX03014158 Ensembl:ENSCAFT00000020582 OMA:RCQYAHS
Uniprot:E2RBM4
Length = 2919
Score = 243 (90.6 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 93/304 (30%), Positives = 144/304 (47%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPL-QLSGIKHAVL 395
+ F L + + L T S + S+ + ++IDEA E E+ IPL S + VL
Sbjct: 2597 RKFELDQHRVILCTCSCAASA-SLRKLDVRQILIDEAGMATEPETLIPLVAFSKAEKVVL 2655
Query: 396 FGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYEN 455
GD QL +V+++ RSLFER H+L QYRMH I FP+ FYE
Sbjct: 2656 LGDHKQLRPVVKNEQLQNLGLDRSLFERYHV---DAHMLDTQYRMHEGICAFPSMEFYEK 2712
Query: 456 KIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFG---GREEFI--------EHSCRNMVEV 504
K++ +R+ + G + G S +FG G E+ + E+S N EV
Sbjct: 2713 KLKTWQGLRRPPS----ILGHI-GKESCSVIFGHVQGHEQSLLVSTDEGNENSKANPEEV 2767
Query: 505 SVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
+ V++I L + E + I++PY+AQ I ++L + V+ V V SI
Sbjct: 2768 AAVVRIAKQLTLG--RTVEPKDVAILTPYNAQAAEISKRLVREGVSG----VTVCSITKS 2821
Query: 565 QGGEEDLIIISTVRSNNGGSI-------------GFLSNSKRVNVALTRARHCLWILGNA 611
QG E +++STVR+ + GF+ + +VNVA+TRAR L ++G+
Sbjct: 2822 QGSEWRYVLVSTVRTCQESDLDQRPTKSWLKRFLGFVVDPNQVNVAITRAREGLCVIGDH 2881
Query: 612 RTLT 615
R L+
Sbjct: 2882 RLLS 2885
Score = 175 (66.7 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 81/311 (26%), Positives = 147/311 (47%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGI-KHAVLFGDE 399
L++ + ++T S + L V + ++IDEAAQ+ E E+ PL+ + VL GD
Sbjct: 885 LEQHRIVVTTTSQARELR-VPAGFFSHILIDEAAQMLECEALTPLRYAAPGTRVVLAGDH 943
Query: 400 CQLPAMVESKVSNEACFGRSLFERLSYLGYSK--H-------LLSIQ-YRMHPSISCFPN 449
Q+ + S +A G +L RL + Y + H L+ Q YR +I F +
Sbjct: 944 MQVTPRLFSVPRAQAA-GHTLLYRL-FQHYQREAHEVAQRSRLIFHQNYRSTEAILSFVS 1001
Query: 450 SYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEH-SCRNMVEVSVVM 508
+FY K S + R P P F +V G E + S N EV+ V+
Sbjct: 1002 RHFYVAK---GSPIHASG---RVPPHPRLHPLMFCHVAGNPERDLSSTSWLNAAEVAQVV 1055
Query: 509 KILLNLYKAWID---SKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQ 565
+ + +L+ W ++E+ I +VS + AQV A++++L + + V V S +
Sbjct: 1056 EQVRDLHDGWPSCWGAREQKHICVVS-HGAQVTALRQELRKRNLGQ----VSVGSFEILP 1110
Query: 566 GGEEDLIIISTVRSNNG------GSIGFLSNSKRVNVALTRARHCLWILGNARTLTRK-- 617
G E ++++STV +++ S+GF ++++ +N +TRA+ + +GNA L
Sbjct: 1111 GREFRVVVLSTVHNHHSLLSSGTASLGFFTDARVLNTIMTRAQSQVVAVGNALALCSSGA 1170
Query: 618 -KSVWEALVHD 627
+W++ + +
Sbjct: 1171 CSKLWKSFIRE 1181
Score = 85 (35.0 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 53 LIWGPPGTGKTKTVSML-LVILLQMKFRTLVCTPTNVA 89
LI+GP GTGKT T++M L ++ Q + L+CT TN A
Sbjct: 788 LIYGPFGTGKTYTLAMASLEVIRQPHTKVLICTHTNSA 825
Score = 64 (27.6 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKT 63
P TLN SQ +AV + L++ +I GPPGTGKT
Sbjct: 2417 PGGPHTLNRSQNRAVRAALKKQ-------FTVIQGPPGTGKT 2451
Score = 43 (20.2 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 883 LSPRSTFILGRSGTGKTTVLTRKLF 907
L + T I G GTGKT V +F
Sbjct: 2435 LKKQFTVIQGPPGTGKTVVAFHIVF 2459
Score = 40 (19.1 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGP 57
L S D QAV RC A +WGP
Sbjct: 2153 LGSCFLDQMPQAVRD-----RCPDVAEYSRVWGP 2181
>UNIPROTKB|E2QSH2 [details] [associations]
symbol:E2QSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
Ensembl:ENSCAFT00000021752 Uniprot:E2QSH2
Length = 1040
Score = 166 (63.5 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 45/126 (35%), Positives = 77/126 (61%)
Query: 509 KILLNLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGG 567
K+++ L +I + K S IGI++PY Q+ I + L +S+ V+V ++D +QG
Sbjct: 917 KLIVFLTSVFIKAGCKPSDIGIIAPYRQQLKIINDLL----FHSSIRMVEVNTVDKYQGR 972
Query: 568 EEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
++ +I++S VRSN G IG L + +R+NVA+TRA+H L +LG +L R + + L+H
Sbjct: 973 DKSIILVSFVRSNKDGPIGELLKDWRRLNVAITRAKHKLILLGCVPSLNRYPPLGK-LLH 1031
Query: 627 DANARQ 632
N+ +
Sbjct: 1032 HLNSEK 1037
Score = 122 (48.0 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 44/164 (26%), Positives = 75/164 (45%)
Query: 311 LRKLQSSFNELNLPSAVEKDLL----EDLLKSFCLKRASLFLSTASSSYMLHSVAM---E 363
L K + F L V +D+ E++ +S +K +L +S ++ + M
Sbjct: 688 LAKFKIGFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATTCMGINH 747
Query: 364 PL------NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFG 417
P+ +F ++DEA+Q+ + PL S + VL GD QLP +V ++ +
Sbjct: 748 PIFSRKTFDFCIVDEASQISQPICLGPLFFS--QRFVLVGDHQQLPPLVLNREARALGMS 805
Query: 418 RSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
SLF+RL + L++QYRM+ I N Y+ K+ S
Sbjct: 806 ESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYDGKLECGS 849
Score = 80 (33.2 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 625 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYTCGFSVLLTSYTH 678
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 679 SAVDNILLKLAK 690
>ZFIN|ZDB-GENE-030131-9089 [details] [associations]
symbol:mov10b.1 "Moloney leukemia virus 10,
homolog, b.1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0035279 "mRNA cleavage involved in gene
silencing by miRNA" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR003593
SMART:SM00382 ZFIN:ZDB-GENE-030131-9089 GO:GO:0005524 GO:GO:0003723
GO:GO:0004386 GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:BX323059 EMBL:BC171375
IPI:IPI00801311 RefSeq:NP_001037807.2 UniGene:Dr.74181
ProteinModelPortal:Q1LXK4 STRING:Q1LXK4 Ensembl:ENSDART00000086946
GeneID:556024 KEGG:dre:556024 CTD:556024 HOGENOM:HOG000239755
InParanoid:Q1LXK4 OMA:NLVGECY OrthoDB:EOG4SXNC4 NextBio:20881283
Bgee:Q1LXK4 Uniprot:Q1LXK4
Length = 1013
Score = 238 (88.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 77/210 (36%), Positives = 107/210 (50%)
Query: 429 YSKHLLSIQYRMHPSISCFPNSYFYENKIRD-SSTVRKRSYEKRFLHGPMYG-PYSFINV 486
Y LL YR HPSI PN FY+N+++ + + R Y + H P G P F V
Sbjct: 746 YVTKLLQ-NYRSHPSILKVPNELFYDNELKACADEISSRQY-CTWEHLPKRGFPVIFHGV 803
Query: 487 FGGRE-EFIEHSCRNMVEVSVVM----KILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQ 541
G E E S N E+ +M K+LL K I IGI++PY QV I+
Sbjct: 804 VGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPKDIGIIAPYRKQVEKIR 863
Query: 542 E--KLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGG-------SIGFLSNS 591
+ K+ + + +G +KV S++ FQG E +II+STVRS+ +IGFL N
Sbjct: 864 QAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEHIILDDKFNIGFLKNE 923
Query: 592 KRVNVALTRARHCLWILGNARTLTRKKSVW 621
KR NVA+TRA+ L ++GN L R +W
Sbjct: 924 KRFNVAVTRAKALLIMVGNPIIL-RTDEIW 952
Score = 128 (50.1 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 60/217 (27%), Positives = 96/217 (44%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHA-----VLFGDECQLPAMVESKVSNEACFGRSLFE 422
+ +DEA E E I + ++G+ +A VL GD QL ++ S + + G SL E
Sbjct: 669 IFVDEAGHAVEPE--IVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLE 726
Query: 423 RLS-----Y----LGYSKHLLS--IQ-YRMHPSISCFPNSYFYENKIRD-SSTVRKRSYE 469
RL Y G+ ++ +Q YR HPSI PN FY+N+++ + + R Y
Sbjct: 727 RLMTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKVPNELFYDNELKACADEISSRQY- 785
Query: 470 KRFLHGPMYG-PYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIG 528
+ H P G P F V G E E + + S + KI+ L K + +K I
Sbjct: 786 CTWEHLPKRGFPVIFHGVVGKDER--ESTSPSFFNTSEIDKIMDYLKKLLLTQAKK-GIA 842
Query: 529 IVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQ 565
+SP ++A K K + ++ S+ G +
Sbjct: 843 KISPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIE 879
Score = 78 (32.5 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 53 LIWGPPGTGKTKTVSMLLVILLQMK--FRTLVCTPTNVAIKELAARVV 98
L++GPPGTGKT T+ + + + R L C P+N A +L +++
Sbjct: 547 LVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKLI 594
>UNIPROTKB|Q9P2E3 [details] [associations]
symbol:ZNFX1 "NFX1-type zinc finger-containing protein 1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] Pathway_Interaction_DB:telomerasepathway
GO:GO:0046872 eggNOG:COG1112 EMBL:AL049766 EMBL:AB037825
EMBL:AK000573 EMBL:AK002139 EMBL:AK022641 EMBL:AK023836
IPI:IPI00165981 IPI:IPI00220462 RefSeq:NP_066363.1
UniGene:Hs.371794 ProteinModelPortal:Q9P2E3 SMR:Q9P2E3
IntAct:Q9P2E3 STRING:Q9P2E3 PhosphoSite:Q9P2E3 DMDM:23821814
PaxDb:Q9P2E3 PeptideAtlas:Q9P2E3 PRIDE:Q9P2E3
Ensembl:ENST00000371752 Ensembl:ENST00000396105 GeneID:57169
KEGG:hsa:57169 UCSC:uc002xui.3 CTD:57169 GeneCards:GC20M047854
HGNC:HGNC:29271 HPA:HPA046629 neXtProt:NX_Q9P2E3
PharmGKB:PA143485687 HOVERGEN:HBG052201 InParanoid:Q9P2E3
OMA:CVRLCSE PhylomeDB:Q9P2E3 ChiTaRS:ZNFX1 GenomeRNAi:57169
NextBio:63185 ArrayExpress:Q9P2E3 Bgee:Q9P2E3 CleanEx:HS_ZNFX1
Genevestigator:Q9P2E3 GermOnline:ENSG00000124201 Uniprot:Q9P2E3
Length = 1918
Score = 248 (92.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 89/303 (29%), Positives = 154/303 (50%)
Query: 328 EKDLLEDLLKSFCLKRASL--FLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPL 385
E L EDL LK A + +T ++ Y +EP ++++EAA++ E+ TI
Sbjct: 965 ELRLQEDL---HILKDAQVVGMTTTGAAKYRQILQKVEP-RIVIVEEAAEVLEAH-TIAT 1019
Query: 386 QLSGIKHAVLFGDECQL-PAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSI 444
+H +L GD QL P+ ++ SLFERL + L+ Q+RM P I
Sbjct: 1020 LSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEI 1079
Query: 445 SCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEV 504
+ + Y++ + + +V K YEK + G + + F +E S +N E
Sbjct: 1080 ARLLTPHIYQD-LENHPSVLK--YEK--IKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEA 1134
Query: 505 SVVMKILLN-LYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDG 563
V+++ L + ++ S+ I I++ Y+ Q+ +++ + +K AG V+V +D
Sbjct: 1135 HFVVELCKYFLCQEYLPSQ----ITILTTYTGQLFCLRKLMPAK--TFAG--VRVHVVDK 1186
Query: 564 FQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEA 623
+QG E D+I++S VRSN G +GFL S R+ VAL+RA+ ++ +GN + L K +W
Sbjct: 1187 YQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLA-KVPLWSK 1245
Query: 624 LVH 626
++H
Sbjct: 1246 IIH 1248
Score = 74 (31.1 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 32/90 (35%), Positives = 42/90 (46%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKT----KTVSMLLV------ILLQMK 77
L+DSQ +A+ L + + +I GPPGTGKT K V LL I LQ K
Sbjct: 598 LDDSQMEALQFALTR-------ELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQ-K 649
Query: 78 FRTLVCTPTNVAIKELAARVVKLVKESVER 107
F LV TN A+ + + K S+ R
Sbjct: 650 FPILVVCYTNHALDQFLEGIYNCQKTSIVR 679
>ZFIN|ZDB-GENE-090313-71 [details] [associations]
symbol:dna2 "DNA replication helicase 2 homolog
(yeast)" species:7955 "Danio rerio" [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISS] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=ISS]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISS] [GO:0005760 "gamma DNA polymerase
complex" evidence=ISS] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0045740 "positive regulation of DNA replication"
evidence=ISS] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
ZFIN:ZDB-GENE-090313-71 GO:GO:0017108 GO:GO:0043142 GO:GO:0033567
PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852 EMBL:BX530068
IPI:IPI00901582 Ensembl:ENSDART00000109798 ArrayExpress:F1Q892
Bgee:F1Q892 Uniprot:F1Q892
Length = 1378
Score = 173 (66.0 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 49/137 (35%), Positives = 79/137 (57%)
Query: 492 EFIEHS-CRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVN 550
E +E S N E +V ++ L KA + + IG+++PY Q+ I L
Sbjct: 1222 ETVEKSGISNHTEAVLVQGLVTLLLKAGCRACD---IGVIAPYRQQLKVISSLLQG---- 1274
Query: 551 SAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILG 609
A A++V ++D +QG ++ +II+S VRSN G++G L + +R+NVA+TRA+H L +LG
Sbjct: 1275 DAFKALEVNTVDKYQGRDKSVIIVSFVRSNAEGNLGELLQDWRRLNVAITRAKHKLLMLG 1334
Query: 610 NARTLTRKKSVWEALVH 626
+A TL R + + L H
Sbjct: 1335 SAPTLRRYAPLEKLLCH 1351
Score = 123 (48.4 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS 425
+F ++DEA+Q+ + PL + + VL GD QLP +V++ + SLF+RL
Sbjct: 1074 DFCIVDEASQISQPVCIGPLFYA--QRFVLVGDHQQLPPIVQNAEARSLGMDESLFKRLE 1131
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
+ + L++QYRM+ +I N+ YE ++ S
Sbjct: 1132 HHRDAVVQLNVQYRMNSAIMSLSNALMYEGRLECGS 1167
Score = 73 (30.8 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 944 LNKPQKQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILHACGFSVLLTSYTH 997
Query: 88 VAIKELAARV 97
A+ + ++
Sbjct: 998 SAVDNILLKL 1007
Score = 47 (21.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 370 IDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVE-SKVSNEACFGRSLF-ERLSYL 427
++E QL E + G+KH + + E S++S C G + +R +
Sbjct: 1043 LEELEQLYSRELIVATTCMGVKHPIFSRRRFDFCIVDEASQISQPVCIGPLFYAQRFVLV 1102
Query: 428 GYSKHL 433
G + L
Sbjct: 1103 GDHQQL 1108
>ZFIN|ZDB-GENE-070912-617 [details] [associations]
symbol:si:dkey-97a13.6 "si:dkey-97a13.6"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 ZFIN:ZDB-GENE-070912-617
GO:GO:0005524 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391 EMBL:BX663525
IPI:IPI00499390 RefSeq:XP_699251.2 UniGene:Dr.89869
Ensembl:ENSDART00000017829 GeneID:570654 KEGG:dre:570654
NextBio:20890238 Uniprot:E7F3B1
Length = 2781
Score = 248 (92.4 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 99/332 (29%), Positives = 149/332 (44%)
Query: 329 KDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLS 388
K LL D + L+R + L T +++ + ++IDE A E ++ +PL
Sbjct: 2455 KKLLNDA-RLHELERHDIILCTCTAAASPNLKKTLSARQILIDECAMATEPQTLVPLVSF 2513
Query: 389 GIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFP 448
+ VL GD QL +V++ RSLFER Y+ + +L QYRMH I FP
Sbjct: 2514 KPEKVVLLGDHKQLRPIVKNNHVRRLGMTRSLFER--YMDRAI-MLDTQYRMHEEICKFP 2570
Query: 449 NSYFYENK----IRDSSTVRK-----RSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCR 499
+ +Y + +R+ ++V R KR L G + G + V R E+S
Sbjct: 2571 SEAYYNDMLKTVVRERTSVLNAETEGRRQSKRILFGDIRGEEIGLVVSTARGN--ENSKA 2628
Query: 500 NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVM 559
N EV ++I + L E I I+SPY+AQV I+E+L + GF V
Sbjct: 2629 NFDEVKKAVEICIQLVTVGRVRPE--DIAILSPYNAQVAQIRERLSDFELK--GFTVT-- 2682
Query: 560 SIDGFQGGEEDLIIISTVRSNNGGSI-------------GFLSNSKRVNVALTRARHCLW 606
+I QG E +I+S VRS I GF+ + ++NV +TRA+ L
Sbjct: 2683 TITKSQGSEWQYVILSIVRSCPSDEIEPMPSREWLSKHIGFVGDENQINVGITRAQVGLC 2742
Query: 607 ILGNARTLTRKKSVWEALVHDANARQCFFNAD 638
ILGN L + W+ L+ + C AD
Sbjct: 2743 ILGNQAVLNCSPA-WQKLLKHYSGHGCVVTAD 2773
Score = 157 (60.3 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 81/310 (26%), Positives = 141/310 (45%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNF---LVIDEAAQLKESESTIPLQLSGIKHA--VL 395
L+ + ++T S + LH + + P F ++IDEA+Q+ E E+ + L L+ KH VL
Sbjct: 655 LESHRIIITTTSIARHLHELKL-PKGFFTHILIDEASQMLEGEALMALGLAD-KHTRVVL 712
Query: 396 FGDECQL-P---AMVESKVSNEACFGRSLF-----ERLSYLGYSKHLLSIQYRMHPSISC 446
GD Q+ P ++ + K S R LF + ++ S+ + + YR I
Sbjct: 713 AGDHMQMAPKLFSVTDDKRSEHTLLNR-LFHYYQDQSINIAKKSRIIFNENYRSTTEIVD 771
Query: 447 FPNSYFY-ENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVS 505
F ++YFY + I+ V K + + G + ++ ++ N V V+
Sbjct: 772 FVSTYFYVSDGIKARGDVHPHPRLKPLIFHHVRGECHLSSTITSTS-WLNYAEVNSV-VN 829
Query: 506 VVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGF-AVKVMSIDGF 564
+V +L + W D K+ I ++S QV AI+ L K GF V V ++
Sbjct: 830 MVQVLLTDWPMEWGD-KDPKQICVLSE-GQQVAAIRIHLRRK-----GFYGVSVQNLANI 882
Query: 565 QGGEEDLIIISTVRSNN------GGSIGFLSNSKRVNVALTRARHCLWILGNARTLT--- 615
QG + +III+TV + + F + + +N ALTRA+ + ++G+A L
Sbjct: 883 QGKQFRVIIITTVHTRDKLLQLDSSCPEFFDDIRALNTALTRAQSLVVVIGDAGALCCFG 942
Query: 616 RKKSVWEALV 625
+ VW A +
Sbjct: 943 KCSKVWRAYI 952
Score = 75 (31.5 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCT 84
S LN+ Q A+ L + D A LI+GP GTGKT ++ L + + + L+CT
Sbjct: 529 SQLNNKQQIALNFILGKCEDDKVAAPLLIYGPFGTGKTLCLASAAKELAHRSQNKVLICT 588
Query: 85 PTN 87
TN
Sbjct: 589 YTN 591
Score = 64 (27.6 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTL 81
LN+SQ +A+ L + K TI I GPPGTGKT + ++ Q+ R L
Sbjct: 2290 LNESQFKALEKAL-----NGKFTI--IQGPPGTGKTVVGAYIVYWFSQLNSRNL 2336
Score = 51 (23.0 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 879 LEMILSPRSTFILGRSGTGKTTV 901
LE L+ + T I G GTGKT V
Sbjct: 2298 LEKALNGKFTIIQGPPGTGKTVV 2320
Score = 46 (21.3 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 663 PESRLFR-SQRWK--VNFSENFLKSFRKLTSDPTKKSVIHLLLKLSNGWRP 710
P +LFR S ++ V ++N +K F ++ P+K S ++ + WRP
Sbjct: 2055 PTVQLFRLSSSFEICVEHTDNPIKCFSRIADHPSKGSYSNVE-EYVQIWRP 2104
Score = 37 (18.1 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQL 53
+SS + S QA++ +R + D ++ L
Sbjct: 1966 ISSEIQQSTWQAIVEAVRDEKWDEAKSLVL 1995
>UNIPROTKB|F1PYQ4 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 EMBL:AAEX03002775 EMBL:AAEX03002776
EMBL:AAEX03002777 Ensembl:ENSCAFT00000036654 Uniprot:F1PYQ4
Length = 997
Score = 228 (85.3 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 92/337 (27%), Positives = 158/337 (46%)
Query: 311 LRKLQSSFNELNLPSAVEKDLL----EDLLKSFCLKRASLFLSTASSSYMLHSVAM---E 363
L K + F L V +D+ E++ +S +K +L +S ++ + M
Sbjct: 661 LAKFKIGFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATTCMGINH 720
Query: 364 PL------NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFG 417
P+ +F ++DEA+Q+ + PL S + VL GD QLP +V ++ +
Sbjct: 721 PIFSRKTFDFCIVDEASQISQPICLGPLFFS--QRFVLVGDHQQLPPLVLNREARALGMS 778
Query: 418 RSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPM 477
SLF+RL + L++QYRM+ I N Y+ K+ S ++ P
Sbjct: 779 ESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYDGKLECGSD----KVANAVVNLPN 834
Query: 478 YGPYSFINVFGGREEFIEHSCR-NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ 536
F ++ E+ E + + LN KA + IGI++PY Q
Sbjct: 835 LKDVKLELEFYA--DYSENPWMIGAFEPNNPV-CFLNTDKAGCKPSD---IGIIAPYRQQ 888
Query: 537 VVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVN 595
+ I + L +S+ V+V ++D +QG ++ +I++S VRSN G IG L + +R+N
Sbjct: 889 LKIINDLL----FHSSIRMVEVNTVDKYQGRDKSIILVSFVRSNKDGPIGELLKDWRRLN 944
Query: 596 VALTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
VA+TRA+H L +LG +L R + + L+H N+ +
Sbjct: 945 VAITRAKHKLILLGCVPSLNRYPPLGK-LLHHLNSEK 980
Score = 80 (33.2 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 598 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYTCGFSVLLTSYTH 651
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 652 SAVDNILLKLAK 663
>UNIPROTKB|F1RMM8 [details] [associations]
symbol:LOC100519780 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045944 "positive regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
OMA:FRAAHIM PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:FP102633 Ensembl:ENSSSCT00000003670 Uniprot:F1RMM8
Length = 2879
Score = 257 (95.5 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 97/327 (29%), Positives = 158/327 (48%)
Query: 329 KDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPL- 385
+ +L++ K F + R + L T S + S ++ +N +++DEA E E+ IPL
Sbjct: 2552 RKVLQEARK-FEVDRHRVLLCTCSCAA---SASLRDVNIRQILVDEAGLASEPETLIPLV 2607
Query: 386 QLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSIS 445
S ++ VL GD QL +V+S+ RSL +R +L +QY +H SI
Sbjct: 2608 SFSQVEKVVLLGDHKQLRPVVKSEQLQNLGLDRSLLQRYRR---DASMLDLQYCVHESIC 2664
Query: 446 CFPNSYFYENKIRDSSTVRKR----SYEKR---FLHGPMYGPYSFINVFGGREEFIEHSC 498
FP+ FY+ K++ +R Y K + G + P + V EE E+S
Sbjct: 2665 AFPSMEFYKKKLKTWQGLRLPPSILGYGKENCSVIFGDVQSPEESLVV--STEEGRENSK 2722
Query: 499 RNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKV 558
N + ++V+ + L +D K+ + I++PY AQV+ I ++L V AG V V
Sbjct: 2723 VNKEQAALVVCLAKQLVSGRVDPKD---MAILTPYHAQVLEISKRLEEARV--AG--VTV 2775
Query: 559 MSIDGFQGGEEDLIIISTVRSNNGG-------------SIGFLSNSKRVNVALTRARHCL 605
SI QG + +++STVR+ S+GFL + +VNVALTRA+ L
Sbjct: 2776 CSITKSQGRQWRYVLVSTVRTCQESDLDLRPTKSWLQKSLGFLVDPNQVNVALTRAQEGL 2835
Query: 606 WILGNARTLTRKKSVWEALVHDANARQ 632
W++G+ R L R +W + A++
Sbjct: 2836 WVVGD-RLLLRCCPLWSRFLDFCEAQK 2861
Score = 72 (30.4 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 53 LIWGPPGTGKTKTVSML-LVILLQMKFRTLVCTPTN 87
L+ GP GTGKT ++M L ++ Q + L+CT TN
Sbjct: 785 LVCGPFGTGKTYALAMASLEVIRQPGTKVLICTHTN 820
Score = 56 (24.8 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKT 63
LN SQ AV L++ +I GPPGTGKT
Sbjct: 2385 LNPSQNTAVREALKKQ-------FTVIHGPPGTGKT 2413
Score = 41 (19.5 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 110 RDALFFPLGDILLLGNNERLKVDSGVEEIYLDYRVK 145
R+ ++PLG IL + E + G+ + L+Y +K
Sbjct: 1459 RERFYYPLGVILKV-LPEATTWEQGLRILRLEYGLK 1493
>ZFIN|ZDB-GENE-061013-333 [details] [associations]
symbol:zgc:154086 "zgc:154086" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND]
ZFIN:ZDB-GENE-061013-333 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 PROSITE:PS51192 InterPro:IPR025223 Pfam:PF14444
HOVERGEN:HBG052382 KO:K13983 InterPro:IPR026125
PANTHER:PTHR10887:SF6 HOGENOM:HOG000015363 EMBL:BC124807
IPI:IPI00611882 RefSeq:NP_001070795.1 UniGene:Dr.40096
ProteinModelPortal:Q08BA5 GeneID:768184 KEGG:dre:768184
NextBio:20918499 Uniprot:Q08BA5
Length = 1106
Score = 210 (79.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 87/270 (32%), Positives = 124/270 (45%)
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLS----YL----GYSKHLLS---IQYRMHP 442
VL GD QL +V+S++++ G SL ERL Y G++ L++ YR H
Sbjct: 839 VLAGDPKQLGPVVKSRLASVFGLGVSLLERLMGNSLYACGERGFNPLLVTKLLYNYRSHE 898
Query: 443 SISCFPNSYFYENKIRDSSTVR-KRSYEKRFLHG---PMYG-PYSFINVFGGR-EEFIEH 496
++ P+ FY ++ VR +R+ H P G P F V G E
Sbjct: 899 ALLDLPSRLFYAGEL----CVRAQRAAVDSLCHWNKLPTRGFPLIFHGVRGSEMREGCNP 954
Query: 497 SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFA- 555
S N E VM L K + IG+++PY QV I+ L G
Sbjct: 955 SWFNPAEAVQVMMYCCQLAKRLYNPISAADIGVIAPYRKQVEKIRVLL-----QRVGLGE 1009
Query: 556 VKVMSIDGFQGGEEDLIIISTVRSNNG-------GSIGFLSNSKRVNVALTRARHCLWIL 608
VKV S++ FQG E ++I+STVRSN +GFLSN KR NVA+TRA+ L ++
Sbjct: 1010 VKVGSVEEFQGQEFLIMILSTVRSNESLLNEELQCMLGFLSNPKRFNVAITRAKALLIVI 1069
Query: 609 GNARTLTRKKSVWEALVHDANARQCFFNAD 638
GN L K+ + AL+ + + F D
Sbjct: 1070 GNPHVLI-KEPCFSALLQYSYDNRAFIGCD 1098
Score = 189 (71.6 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 83/259 (32%), Positives = 120/259 (46%)
Query: 346 LFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQL----SGIKHAVLFGDE 399
+ +ST SS+ M + + + +F + +DEA Q E E+ IPL L SG VL GD
Sbjct: 787 IVVSTCSSAGMFYQIGLRVGHFTHVFVDEAGQATEPETLIPLSLLSETSG--QIVLAGDP 844
Query: 400 CQLPAMVESKVSNEACFGRSLFERLS----YL----GYSKHLLS---IQYRMHPSISCFP 448
QL +V+S++++ G SL ERL Y G++ L++ YR H ++ P
Sbjct: 845 KQLGPVVKSRLASVFGLGVSLLERLMGNSLYACGERGFNPLLVTKLLYNYRSHEALLDLP 904
Query: 449 NSYFYENKIRDSSTVR-KRSYEKRFLHG---PMYG-PYSFINVFGGR-EEFIEHSCRNMV 502
+ FY ++ VR +R+ H P G P F V G E S N
Sbjct: 905 SRLFYAGEL----CVRAQRAAVDSLCHWNKLPTRGFPLIFHGVRGSEMREGCNPSWFNPA 960
Query: 503 EVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFA-VKVMSI 561
E VM L K + IG+++PY QV I+ L G VKV S+
Sbjct: 961 EAVQVMMYCCQLAKRLYNPISAADIGVIAPYRKQVEKIRVLL-----QRVGLGEVKVGSV 1015
Query: 562 DGFQGGEEDLIIISTVRSN 580
+ FQG E ++I+STVRSN
Sbjct: 1016 EEFQGQEFLIMILSTVRSN 1034
Score = 99 (39.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 21 GPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT-VSMLLVILLQMKF- 78
G + LN +Q QAV R + + + T +++GPPGTGKT T + +L + ++
Sbjct: 666 GQFFNPDLNAAQKQAVR---RILSGESRPTPYVLFGPPGTGKTITLIEAILQVHHRISCS 722
Query: 79 RTLVCTPTNVAIKELAARV 97
R LVCTP+N A + R+
Sbjct: 723 RVLVCTPSNSAADLICMRL 741
>ZFIN|ZDB-GENE-040426-2419 [details] [associations]
symbol:helz "helicase with zinc finger"
species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR011539 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 ZFIN:ZDB-GENE-040426-2419 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 GO:GO:0003676
GO:GO:0004386 eggNOG:COG1112 EMBL:BC066461 IPI:IPI00500029
RefSeq:NP_998431.1 UniGene:Dr.35354 ProteinModelPortal:Q6NYU2
GeneID:406550 KEGG:dre:406550 CTD:9931 HOGENOM:HOG000231202
HOVERGEN:HBG031603 OrthoDB:EOG4NP72K NextBio:20818112
ArrayExpress:Q6NYU2 Uniprot:Q6NYU2
Length = 1860
Score = 202 (76.2 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 80/254 (31%), Positives = 128/254 (50%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK--HAVLF 396
++R + + T S+S L + +EP F +++DEAAQ E E+ +PL L+ +K VL
Sbjct: 755 VERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALA-VKSTRVVLA 813
Query: 397 GDECQLPAMVESKVSNEACFGRSLFERLSYLGY-SKH----LLSIQYRMHPSISCFPNSY 451
GD QL V S+ + E SL +RL Y Y S++ LL YR H +I + +
Sbjct: 814 GDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPSEYPCRILLCENYRSHEAIINYTSDL 872
Query: 452 FYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVVMKI 510
FYE K+ S K+ H Y P +F G +E + N EV +++
Sbjct: 873 FYEGKLMASG--------KQPPHKDFY-PLTFFTARGEDVQEKNSTAYYNNAEVFEIVER 923
Query: 511 LLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGG 567
+ + K W S KL SIG+VSPY+ QV I+ +L K ++ +V+++ QG
Sbjct: 924 VEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKKRMSEVSVE-RVLNV---QGK 979
Query: 568 EEDLIIISTVRSNN 581
+ ++ +STVR+ +
Sbjct: 980 QFRVLFLSTVRTRH 993
Score = 89 (36.4 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLV-ILLQ 75
N + L LN Q +A+L+ + + LI GP GTGKT T++ + IL Q
Sbjct: 624 NRQWDEQLDPRLNAKQKEAILAITTPLSINLPPV--LIIGPYGTGKTFTLAQAVKHILKQ 681
Query: 76 MKFRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 682 PESRVLICTHSNSA 695
Score = 70 (29.7 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWEALV 625
GFLSN K +N A+TRA+ + ++G+ L R + WE +
Sbjct: 1019 GFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFI 1061
Score = 38 (18.4 bits), Expect = 4.9e-12, Sum P(3) = 4.9e-12
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 2 DETCELCSMQSEGVWNETFGPSLSSTLNDSQAQAVLSCL 40
DE C+ + + +F L S L D Q V S L
Sbjct: 70 DEDCKHVFAEELAKGDGSFRAGLQSLLLDGSLQEVCSVL 108
>FB|FBgn0041164 [details] [associations]
symbol:armi "armitage" species:7227 "Drosophila melanogaster"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS;IMP] [GO:0007319 "negative
regulation of oskar mRNA translation" evidence=IMP] [GO:0000578
"embryonic axis specification" evidence=NAS;IMP] [GO:0016325
"oocyte microtubule cytoskeleton organization" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007317 "regulation of
pole plasm oskar mRNA localization" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0007616 "long-term memory"
evidence=IMP] [GO:0030424 "axon" evidence=IDA] [GO:0045202
"synapse" evidence=IDA] [GO:0031023 "microtubule organizing center
organization" evidence=IMP] [GO:0046843 "dorsal appendage
formation" evidence=IMP] [GO:0007318 "pole plasm protein
localization" evidence=IMP] [GO:0070725 "Yb body" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] GO:GO:0005524
GO:GO:0005737 EMBL:AE014296 GO:GO:0016246 GO:GO:0000184
GO:GO:0030424 GO:GO:0043025 GO:GO:0030425 GO:GO:0007616
GO:GO:0045202 GO:GO:0007318 eggNOG:COG1112 EMBL:AY598469
RefSeq:NP_001014556.1 RefSeq:NP_647816.2 ProteinModelPortal:Q6J5K9
SMR:Q6J5K9 IntAct:Q6J5K9 STRING:Q6J5K9 PaxDb:Q6J5K9 GeneID:38427
KEGG:dme:Dmel_CG11513 UCSC:CG11513-RA CTD:38427 FlyBase:FBgn0041164
InParanoid:Q6J5K9 OMA:ITISTCT OrthoDB:EOG4DZ094 PhylomeDB:Q6J5K9
GenomeRNAi:38427 NextBio:808602 Bgee:Q6J5K9 GermOnline:CG11513
GO:GO:0070725 GO:GO:0003678 GO:GO:0046843 GO:GO:0031023
InterPro:IPR026122 PANTHER:PTHR10887:SF17 Uniprot:Q6J5K9
Length = 1274
Score = 185 (70.2 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 70/233 (30%), Positives = 111/233 (47%)
Query: 428 GYSKHLLS---IQYRMHPSISCFPNSYFYENKI------RDSSTVRKRS-----YEKRFL 473
GY+ +L+ YR PSI + FY++++ +DS R S +E
Sbjct: 1021 GYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESEKD 1080
Query: 474 HGPMYGPYSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
+G + F + G R+ S N EV V + + LY+A + + + IGI++P
Sbjct: 1081 IPQAHGTF-FYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQ---IGIITP 1136
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNG-------GSI 585
Y QV + L S ++ + K+ S++ FQG E D+I+ISTVRS+ S+
Sbjct: 1137 YQKQV----KMLRSMFIGTDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSL 1192
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAD 638
GF+ SKR+NVA++RAR + I GN L + W L+ +F D
Sbjct: 1193 GFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDEC-WRQLILFCVKNNAYFGCD 1244
Score = 85 (35.0 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHA--VLFGDECQLPAMVESKVSNEACFGRSLFERL 424
++ DEA Q E E+ +P+ + K + VL GD QL ++V S+++++ F S ERL
Sbjct: 945 VLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERL 1003
Score = 83 (34.3 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT-VSMLLVILLQMK-FRTLV 82
+ +LN Q +AV + LR + + +++GPPG+GKT T + LL ++ + R LV
Sbjct: 781 NQSLNSIQKRAVFNILRG---EAENIPYVLFGPPGSGKTMTLIETLLQLVRNLPGARILV 837
Query: 83 CTPTNVAIKELAARVV 98
TP+N + + R++
Sbjct: 838 GTPSNSSADLVTKRLI 853
Score = 46 (21.3 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 314 LQSSFNELNLPSAVEKDLLEDLLKSFC 340
LQ F L + VEKDL+ + S+C
Sbjct: 859 LQGDFIRLVSYNQVEKDLIPPEIMSYC 885
>MGI|MGI:2138982 [details] [associations]
symbol:Znfx1 "zinc finger, NFX1-type containing 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] MGI:MGI:2138982 GO:GO:0046872
EMBL:CH466551 eggNOG:COG1112 GeneTree:ENSGT00700000104467
EMBL:AL591711 CTD:57169 HOVERGEN:HBG052201 OMA:CVRLCSE
EMBL:AK149249 EMBL:AK150223 EMBL:AK157301 EMBL:BC025488
IPI:IPI00660406 RefSeq:NP_001028368.2 UniGene:Mm.297074
ProteinModelPortal:Q8R151 STRING:Q8R151 PhosphoSite:Q8R151
PaxDb:Q8R151 PRIDE:Q8R151 Ensembl:ENSMUST00000048988 GeneID:98999
KEGG:mmu:98999 HOGENOM:HOG000231023 InParanoid:A2A5R3
NextBio:353739 Bgee:Q8R151 CleanEx:MM_ZNFX1 Genevestigator:Q8R151
GermOnline:ENSMUSG00000039501 Uniprot:Q8R151
Length = 1909
Score = 242 (90.2 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 87/303 (28%), Positives = 152/303 (50%)
Query: 328 EKDLLEDLLKSFCLKRASL--FLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPL 385
E L EDL LK A + +T ++ Y +EP ++++EAA++ E+ TI
Sbjct: 958 ELRLQEDL---HILKDAEVVGMTTTGAAKYRQILQQVEP-RIVIVEEAAEVLEAH-TIAT 1012
Query: 386 QLSGIKHAVLFGDECQL-PAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSI 444
+H +L GD QL P+ ++ SLFERL + L+ Q+RM P I
Sbjct: 1013 LSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEI 1072
Query: 445 SCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEV 504
+ + Y++ + + +V K YE+ + G + + F +E S +N E
Sbjct: 1073 ARLLTPHIYQD-LENHPSVLK--YEQ--IKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEA 1127
Query: 505 SVVMKILLNLY-KAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDG 563
V+++ L + ++ S+ I I++ Y+ Q+ +++ + K AG +KV +D
Sbjct: 1128 HFVVELCQYLLCQEYLPSQ----ITILTTYTGQLFCLRKLMPVK--TFAG--IKVHVVDK 1179
Query: 564 FQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEA 623
+QG E D+I++S VRSN G +GFL R+ VAL+RA+ ++ +GN + L K +W
Sbjct: 1180 YQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQMLA-KVPLWSR 1238
Query: 624 LVH 626
++H
Sbjct: 1239 IIH 1241
Score = 65 (27.9 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 33/100 (33%), Positives = 47/100 (47%)
Query: 20 FG--PSLSST-LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKT----KTVSMLLV- 71
FG PS + L+DSQ +A+ L + + +I GPPGTGKT K V LL
Sbjct: 580 FGQWPSKEALKLDDSQMEALQFALTK-------ELAIIQGPPGTGKTYVGLKIVQALLTN 632
Query: 72 -ILLQMKFRT---LVCTPTNVAIKELAARVVKLVKESVER 107
+ Q+ +T LV TN A+ + + K S+ R
Sbjct: 633 KSVWQINTQTFPILVVCYTNHALDQFLEGIYGCQKTSIVR 672
>ASPGD|ASPL0000069352 [details] [associations]
symbol:AN7246 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000641 InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 PRINTS:PR00819 SMART:SM00382
GO:GO:0005524 EMBL:BN001304 eggNOG:COG0464 GO:GO:0017111
EMBL:AACD01000123 RefSeq:XP_680515.1 ProteinModelPortal:Q5AWT4
EnsemblFungi:CADANIAT00000198 GeneID:2870136 KEGG:ani:AN7246.2
HOGENOM:HOG000168598 OMA:LDNQFRL OrthoDB:EOG4CJZR5 Uniprot:Q5AWT4
Length = 2310
Score = 160 (61.4 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 556 VKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLT 615
+K+ +ID +QG E D++I + RSN G IGF+S +R+NV L+RAR L ++GN+ T T
Sbjct: 960 IKLSTIDNYQGEESDIVIATLTRSNKDGDIGFMSAPQRLNVLLSRARDVLIMIGNSNTFT 1019
Query: 616 --RK-KSVWE 622
RK K VW+
Sbjct: 1020 NSRKGKEVWK 1029
Score = 131 (51.2 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
Identities = 54/186 (29%), Positives = 89/186 (47%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVESKVSNEACFG----RSLFE 422
++++EA ++ ES L S K ++ GD QL P + +S E G RSLFE
Sbjct: 745 VLLEEAGEILESHVLTALG-SHTKQLIMIGDHQQLRPKINNYALSVEKGSGYDLNRSLFE 803
Query: 423 RLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRK---RSYEKRFLHGPMYG 479
RL GY L+ Q+RM P IS Y + + T + R + R +
Sbjct: 804 RLVESGYPHSTLAKQHRMAPEISALVRRLTYPDLLDGDKTKTRLAPRGLQNRVVFIDHSQ 863
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVV 538
P F++ R+ + + S +N EV +V+KI+ L + + +KL I ++PY Q+
Sbjct: 864 PEGFLHGVSDRDGDGGKGSKQNTFEVKLVLKIVKYLGQQGYGT-DKLVI--LTPYLGQLH 920
Query: 539 AIQEKL 544
++E+L
Sbjct: 921 LLREEL 926
Score = 71 (30.1 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 13 EGVWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVI 72
E + G +L+ SQ +++LS L Q + LI GPPGTGK+ +++
Sbjct: 447 ERTLQDILGTEKPLSLDPSQMESLLSGLTQR-------VSLIQGPPGTGKSFVGALIAKA 499
Query: 73 LLQMKFRT-LVCTPTNVAIKELAARVVKL-VKES 104
L + T LV TN A+ + ++ + + ES
Sbjct: 500 LYKHSKETILVMCYTNHALDQFLEDLMDIGIDES 533
Score = 48 (22.0 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 890 ILGRSGTGKTTVLTRKLFQK 909
+LG GTGKTTV +L+ K
Sbjct: 1325 LLGNPGTGKTTVA--RLYAK 1342
Score = 48 (22.0 bits), Expect = 1.5e-14, Sum P(4) = 1.5e-14
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 166 DFLDNCVSLYHTYIDNESMKQSEDINGDIIKE 197
+FL+N SL+ Y+ S+K NG ++E
Sbjct: 69 EFLNNHTSLFILYLSQPSVKNR--CNGQFLQE 98
Score = 44 (20.5 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 891 LGRSGTGKTTV 901
LG GTGKTTV
Sbjct: 1603 LGSPGTGKTTV 1613
Score = 38 (18.4 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 11/61 (18%), Positives = 25/61 (40%)
Query: 301 HKRRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSV 360
H ++ H + ++ + L P ++ D + L L+ +F+ + LH V
Sbjct: 812 HSTLAKQHRMAPEISALVRRLTYPDLLDGDKTKTRLAPRGLQNRVVFIDHSQPEGFLHGV 871
Query: 361 A 361
+
Sbjct: 872 S 872
>UNIPROTKB|I6L9H4 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC005544 EMBL:AC007448
UniGene:Hs.370140 UniGene:Hs.569824 HGNC:HGNC:16878 ChiTaRS:HELZ
EMBL:BC094881 ProteinModelPortal:I6L9H4 Ensembl:ENST00000579953
Uniprot:I6L9H4
Length = 1163
Score = 188 (71.2 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 77/257 (29%), Positives = 123/257 (47%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK-HA 393
K LK + ++ +S Y+ + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 760 KEDILKHRVVVVTLNTSQYLCQ-LDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRI 818
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFP 448
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 819 VLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINYT 877
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVV 507
+ FYE K+ S K+ H Y P +F G +E + N EV V
Sbjct: 878 SELFYEGKLMASG--------KQPAHKDFY-PLTFFTARGEDVQEKNSTAFYNNAEVFEV 928
Query: 508 MKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 929 VERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVE-RVLNV--- 984
Query: 565 QGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 985 QGKQFRVLFLSTVRTRH 1001
Score = 85 (35.0 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76
N + L LN Q +AVL+ + LI GP GTGKT T++ + +LQ
Sbjct: 631 NRQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPV--LIIGPYGTGKTFTLAQAVKHILQQ 688
Query: 77 K--FRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 689 QETSRILICTHSNSA 703
Score = 71 (30.1 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHD 627
GFLSN K +N A+TRA+ + ++G+ L R + WE AL H+
Sbjct: 1027 GFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHE 1074
>POMBASE|SPCC1739.03 [details] [associations]
symbol:hrr1 "Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0031379
"RNA-directed RNA polymerase complex" evidence=IDA] [GO:0031380
"nuclear RNA-directed RNA polymerase complex" evidence=IDA]
PomBase:SPCC1739.03 GO:GO:0005829 GO:GO:0005524 GO:GO:0007059
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003723 GO:GO:0006338
GO:GO:0007049 GO:GO:0030702 GO:GO:0004386 GO:GO:0031048
eggNOG:COG1112 GO:GO:0016585 GO:GO:0031380 PIR:T41111
RefSeq:NP_588411.2 DIP:DIP-29303N STRING:O74465
EnsemblFungi:SPCC1739.03.1 GeneID:2539248 OrthoDB:EOG4DRDMD
NextBio:20800418 Uniprot:O74465
Length = 999
Score = 220 (82.5 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 79/258 (30%), Positives = 129/258 (50%)
Query: 370 IDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL--FERL--S 425
I+EAA + E IP ++ VL GD QL + + F S+ FERL +
Sbjct: 710 IEEAADVLEGP-IIPAVFPSLEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVEN 768
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFIN 485
+ Y++ L++Q RMHP I +S YE D S Y P G
Sbjct: 769 DMEYTR--LTMQRRMHPQIRRLVSSV-YE----DLSDYEITKYWPSI---PGMGEIRRFF 818
Query: 486 VFGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEK 543
+ R E + S N+ E ++++ + L ++ ++ I ++ Y+AQ I E+
Sbjct: 819 LTHSRIEDNDGFASKINLFEAQMLVQFAVYLINNGVEPQK---ITCLTFYAAQKDLI-ER 874
Query: 544 LGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARH 603
L S+ +N +KV ++DG+QG E D++++S VR+N+ +GFLS+ RV V+L+RAR
Sbjct: 875 LLSESLNREKHFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARR 934
Query: 604 CLWILGNARTLTRKKSVW 621
L+I GNA+ + +W
Sbjct: 935 GLFIFGNAQLVAESNPLW 952
Score = 73 (30.8 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKT----KTVSMLLVIL 73
E FGP L+ SQ +A S L + + +I GPPGTGK+ K + LL
Sbjct: 363 EPFGPG-EYILDSSQLKAYQSMLTKR-------LSIIQGPPGTGKSFVTLKAIETLLENT 414
Query: 74 LQMKFRTLVCTPTNVAIKELAARVV 98
LV TN A+ ++ R++
Sbjct: 415 HSHVLPILVACQTNHAVDQILIRLL 439
>UNIPROTKB|E2R8C1 [details] [associations]
symbol:HELZ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:9931 OMA:YRVALLY GeneTree:ENSGT00550000074391
EMBL:AAEX03006372 EMBL:AAEX03006373 EMBL:AAEX03006374
RefSeq:XP_862371.2 Ensembl:ENSCAFT00000018141 GeneID:490907
KEGG:cfa:490907 Uniprot:E2R8C1
Length = 1944
Score = 188 (71.2 bits), Expect = 4.4e-16, Sum P(4) = 4.4e-16
Identities = 77/257 (29%), Positives = 123/257 (47%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK-HA 393
K LK + ++ +S Y+ + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 759 KEDILKHRVVVVTLNTSQYLCQ-LDLEPGFFTHILLDEAAQAMECETIMPLALATKNTRI 817
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFP 448
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 818 VLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINYT 876
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVV 507
+ FYE K+ S K+ H Y P +F G +E + N EV V
Sbjct: 877 SELFYEGKLMASG--------KQPAHKDFY-PLTFFTARGEDVQEKNSTAFYNNAEVFEV 927
Query: 508 MKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 928 VERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVE-RVLNV--- 983
Query: 565 QGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 984 QGKQFRVLFLSTVRTRH 1000
Score = 90 (36.7 bits), Expect = 4.4e-16, Sum P(4) = 4.4e-16
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLV-ILLQ 75
N + L LN Q +AVL+ + LI GP GTGKT T++ + IL Q
Sbjct: 631 NRQWDEQLDPRLNAKQKEAVLAITTPLSIQLPPV--LIIGPYGTGKTFTLAQAVKHILQQ 688
Query: 76 MKFRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 689 QETRILICTHSNSA 702
Score = 80 (33.2 bits), Expect = 4.4e-16, Sum P(4) = 4.4e-16
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHDANA 630
GFLSN K +N A+TRA+ + ++G+ L R + WE AL HD N+
Sbjct: 1026 GFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHDNNS 1076
Score = 40 (19.1 bits), Expect = 4.4e-16, Sum P(4) = 4.4e-16
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 793 NLEVPKTWTATSNVVRFKNLADNDNN 818
N P++W T++ ++N+ N ++
Sbjct: 1799 NFSSPESWVNTTSSTPYQNIPCNGSS 1824
>UNIPROTKB|F1RSM3 [details] [associations]
symbol:HELZ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:9931 OMA:YRVALLY GeneTree:ENSGT00550000074391
EMBL:CU466377 EMBL:CU639426 EMBL:CU929837 RefSeq:XP_003131321.1
UniGene:Ssc.13421 Ensembl:ENSSSCT00000018802 GeneID:100524104
KEGG:ssc:100524104 Uniprot:F1RSM3
Length = 1944
Score = 188 (71.2 bits), Expect = 5.5e-16, Sum P(4) = 5.5e-16
Identities = 77/257 (29%), Positives = 123/257 (47%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK-HA 393
K LK + ++ +S Y+ + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 759 KEDILKHRVVVVTLNTSQYLCQ-LDLEPGFFTHILLDEAAQAMECETIMPLALATKNTRI 817
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFP 448
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 818 VLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINYT 876
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVV 507
+ FYE K+ S K+ H Y P +F G +E + N EV V
Sbjct: 877 SELFYEGKLMASG--------KQPAHKDFY-PLTFFTARGEDVQEKNSTAFYNNAEVFEV 927
Query: 508 MKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 928 VERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVE-RVLNV--- 983
Query: 565 QGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 984 QGKQFRVLFLSTVRTRH 1000
Score = 90 (36.7 bits), Expect = 5.5e-16, Sum P(4) = 5.5e-16
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLV-ILLQ 75
N + L LN Q +AVL+ + LI GP GTGKT T++ + IL Q
Sbjct: 631 NRQWDEQLDPRLNAKQKEAVLAITTPLSIQLPPV--LIIGPYGTGKTFTLAQAVKHILQQ 688
Query: 76 MKFRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 689 QETRILICTHSNSA 702
Score = 76 (31.8 bits), Expect = 5.5e-16, Sum P(4) = 5.5e-16
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHDANA 630
GFLSN K +N A+TRA+ + ++G+ L R + WE AL H+ N+
Sbjct: 1026 GFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNS 1076
Score = 43 (20.2 bits), Expect = 5.5e-16, Sum P(4) = 5.5e-16
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 780 EFINHCKEKSIEGNLEVPKTWTATSNVVRFKNLADNDNN 818
E +H + S N P++W T++ ++N+ N ++
Sbjct: 1788 ELQDHNNQSSF--NFSSPESWVNTTSSTPYQNIPCNGSS 1824
Score = 39 (18.8 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 810 KNLADNDNNSGSDLSGAAFDSRNYA 834
K +A++ N+S SG + + +YA
Sbjct: 1875 KQIAESVNSSSQQSSGGSKPTMSYA 1899
>POMBASE|SPBC16D10.04c [details] [associations]
symbol:dna2 "DNA replication endonuclease-helicase
Dna2" species:4896 "Schizosaccharomyces pombe" [GO:0000084 "S phase
of mitotic cell cycle" evidence=IC] [GO:0000723 "telomere
maintenance" evidence=IGI] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=ISO] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004518 "nuclease activity"
evidence=IMP] [GO:0004527 "exonuclease activity" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0019901 "protein
kinase binding" evidence=IPI] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IMP] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IMP] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0071932 "replication fork reversal" evidence=IMP]
InterPro:IPR026851 PomBase:SPBC16D10.04c InterPro:IPR014808
Pfam:PF08696 GO:GO:0005829 GO:GO:0005524 GO:GO:0046872
EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0051539
GO:GO:0043596 GO:GO:0004003 GO:GO:0004527 GO:GO:0000084
eggNOG:COG1112 GO:GO:0000784 GO:GO:0042162 GO:GO:0031573
GO:GO:0017108 GO:GO:0043137 GO:GO:0031860 GO:GO:0043142
PANTHER:PTHR10887:SF14 EMBL:AF144384 EMBL:AB028014 EMBL:AF075169
PIR:T39568 PIR:T47242 PIR:T51292 RefSeq:NP_596499.2 STRING:Q9URU2
GeneID:2540148 OrthoDB:EOG47H8Z4 NextBio:20801284 GO:GO:0071932
InterPro:IPR022765 Pfam:PF01930 Uniprot:Q9URU2
Length = 1397
Score = 203 (76.5 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 82/291 (28%), Positives = 146/291 (50%)
Query: 352 SSSYMLHSVAME-PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKV 410
SS + HS+ + ++ +IDEA+Q+ PLQL+ + VL GD QLP +V++
Sbjct: 1045 SSLGVYHSIFNKRKFDYCIIDEASQIPLPICLGPLQLA--EKFVLVGDHYQLPPLVKNSR 1102
Query: 411 SNEACFGRSLFERLSYLG-YSKHLLSIQYRMHPSISCFPNSYFYE-NKIRDSSTV--RKR 466
+++ SLF+ LS + L +QYRM+ I+ + Y N + S T+ +K
Sbjct: 1103 TSKDGLSLSLFKLLSEKHPEAVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKL 1162
Query: 467 SYEKRFLHG--P-----MYGPYSFIN-----VFGGREEF--IEHSCRNMVEVSVVMKILL 512
K L P ++ IN +F ++ +E N++E ++
Sbjct: 1163 ILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIE 1222
Query: 513 NLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDL 571
++++ K S IGI+S Y +QV + + L S + +++ ++D +QG ++D+
Sbjct: 1223 QAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKS-FTE-----IEINTVDRYQGRDKDI 1276
Query: 572 IIISTVRSNNGGSIG-FLSNSKRVNVALTRAR-HCLWILGNARTLTRKKSV 620
I+IS VRSN+ +G L + R+NVAL+RA+ C+ + G+ TL+ V
Sbjct: 1277 ILISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCI-MFGSLSTLSSSNIV 1326
Score = 92 (37.4 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTL 81
P LN+ Q A+ C +H + LI G PGTGKT T+S L+ LL K + L
Sbjct: 926 PEFLKCLNEDQITALKKC---HAAEHYS---LILGMPGTGKTTTISSLIRSLLAKKKKIL 979
Query: 82 VCTPTNVAIKELAARV 97
+ + T++A+ + ++
Sbjct: 980 LTSFTHLAVDNILIKL 995
>UNIPROTKB|P42694 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 GO:GO:0004386 eggNOG:COG1112 HOVERGEN:HBG031603
OrthoDB:EOG4NP72K EMBL:D29677 EMBL:AC005544 EMBL:AC007448
IPI:IPI00000897 UniGene:Hs.370140 UniGene:Hs.569824
ProteinModelPortal:P42694 SMR:P42694 IntAct:P42694 STRING:P42694
PhosphoSite:P42694 DMDM:221222452 PaxDb:P42694 PRIDE:P42694
Ensembl:ENST00000358691 UCSC:uc002jfx.4 GeneCards:GC17M065066
HGNC:HGNC:16878 HPA:HPA028276 MIM:606699 neXtProt:NX_P42694
InParanoid:P42694 OMA:YRVALLY ChiTaRS:HELZ ArrayExpress:P42694
Bgee:P42694 CleanEx:HS_HELZ Genevestigator:P42694
GermOnline:ENSG00000198265 Uniprot:P42694
Length = 1942
Score = 188 (71.2 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 77/257 (29%), Positives = 123/257 (47%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK-HA 393
K LK + ++ +S Y+ + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 759 KEDILKHRVVVVTLNTSQYLCQ-LDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRI 817
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFP 448
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 818 VLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINYT 876
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVV 507
+ FYE K+ S K+ H Y P +F G +E + N EV V
Sbjct: 877 SELFYEGKLMASG--------KQPAHKDFY-PLTFFTARGEDVQEKNSTAFYNNAEVFEV 927
Query: 508 MKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 928 VERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVE-RVLNV--- 983
Query: 565 QGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 984 QGKQFRVLFLSTVRTRH 1000
Score = 90 (36.7 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLV-ILLQ 75
N + L LN Q +AVL+ + LI GP GTGKT T++ + IL Q
Sbjct: 631 NRQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPV--LIIGPYGTGKTFTLAQAVKHILQQ 688
Query: 76 MKFRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 689 QETRILICTHSNSA 702
Score = 71 (30.1 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHD 627
GFLSN K +N A+TRA+ + ++G+ L R + WE AL H+
Sbjct: 1026 GFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHE 1073
Score = 45 (20.9 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 780 EFINHCKEKSIEGNLEVPKTWTATSNVVRFKNLADNDNN 818
E +H + S N P++W T++ ++N+ N ++
Sbjct: 1786 ELQDHSNQSSF--NFSSPESWVNTTSSTPYQNIPCNGSS 1822
>MGI|MGI:1925705 [details] [associations]
symbol:Helz "helicase with zinc finger domain" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:1925705
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 GO:GO:0004386 eggNOG:COG1112 CTD:9931
HOGENOM:HOG000231202 HOVERGEN:HBG031603 EMBL:AB093209 EMBL:AL645947
EMBL:BC021818 EMBL:BC076626 EMBL:BC130582 EMBL:AK033094
IPI:IPI00453654 IPI:IPI00649664 IPI:IPI00915056 RefSeq:NP_938040.1
UniGene:Mm.272047 UniGene:Mm.394603 UniGene:Mm.490425
ProteinModelPortal:Q6DFV5 SMR:Q6DFV5 IntAct:Q6DFV5 STRING:Q6DFV5
PhosphoSite:Q6DFV5 PaxDb:Q6DFV5 PRIDE:Q6DFV5
Ensembl:ENSMUST00000075012 Ensembl:ENSMUST00000106746 GeneID:78455
KEGG:mmu:78455 UCSC:uc007mav.1 GeneTree:ENSGT00550000074391
InParanoid:Q8BZZ6 NextBio:348914 Bgee:Q6DFV5 Genevestigator:Q6DFV5
Uniprot:Q6DFV5
Length = 1964
Score = 190 (71.9 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 77/257 (29%), Positives = 124/257 (48%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK-HA 393
K LK + ++ ++S Y+ + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 759 KEDILKHRVVVVTLSTSQYLCQ-LDLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRI 817
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFP 448
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 818 VLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINYT 876
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVV 507
+ FYE K+ S K+ H Y P +F G +E + N EV V
Sbjct: 877 SELFYEGKLMASG--------KQPAHKDFY-PLTFFTARGEDVQEKNSTAFYNNAEVFEV 927
Query: 508 MKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 928 VERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVE-RVLNV--- 983
Query: 565 QGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 984 QGKQFRVLFLSTVRTRH 1000
Score = 88 (36.0 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLV-ILLQ 75
N + L LN Q +AVL+ + LI GP GTGKT T++ IL Q
Sbjct: 631 NRQWDEQLDPRLNAKQKEAVLAITTPLSIQLPPV--LIIGPYGTGKTFTLAQAAKHILQQ 688
Query: 76 MKFRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 689 QETRILICTHSNSA 702
Score = 73 (30.8 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 36/120 (30%), Positives = 56/120 (46%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHDANARQCFFNADD 639
GFLSN K +N A+TRA+ + ++G+ L R + WE AL H+ ++ +
Sbjct: 1026 GFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHGI-TFEQ 1084
Query: 640 DKDLGKAILAVKKXXXXXXXXXNPESRLFRSQRWKVNFSENFLKSFRKLTSDPTKKSVIH 699
K +A L +KK NP + F + ++ S N S R+ S P KS+ H
Sbjct: 1085 IKAQLEA-LELKKTYVL-----NPLAPEFIPRALRLQHSGN---SSRQQQSPPKVKSLYH 1135
Score = 42 (19.8 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 793 NLEVPKTWTATSNVVRFKNLADNDNNSGS 821
N P++W T++ ++N+ N ++ S
Sbjct: 1819 NFPAPESWANTTSSAPYQNIPCNGSSRTS 1847
>UNIPROTKB|Q4S102 [details] [associations]
symbol:GSTENG00025786001 "Chromosome 5 SCAF14773, whole
genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0006284 "base-excision repair" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=ISS] [GO:0045740 "positive regulation of DNA replication"
evidence=ISS] [GO:0005760 "gamma DNA polymerase complex"
evidence=ISS] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0006284 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0017108 GO:GO:0043137 GO:GO:0043142 GO:GO:0006264
PANTHER:PTHR10887:SF14 HOVERGEN:HBG081456 EMBL:CAAE01014773
ProteinModelPortal:Q4S102 STRING:Q4S102 Uniprot:Q4S102
Length = 1043
Score = 213 (80.0 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 84/279 (30%), Positives = 135/279 (48%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS 425
+F ++DEA+Q+ + PL + + VL GD QLP +V+++ + SLF+RL
Sbjct: 763 DFCIVDEASQISQPVCVGPLFYA--RRFVLVGDHQQLPPIVQNQEARSLGMDESLFKRLE 820
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSY-EKRFLHG--PMYGPYS 482
+ L++QYRM+ I NS YE ++ S S L P G +
Sbjct: 821 LHRDAVVQLNVQYRMNRQIMSLSNSLMYEGRLECGSERTATSLITLPLLPSVLPELGSLA 880
Query: 483 FINVF---GGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKL----------SIGI 529
+I F++ S +E +V + N +A + K L IG+
Sbjct: 881 WIQATLLPSNPVCFLDCSAVPALE-TVEQGGISNHTEAALIHKLLLLLIKAGCKPGDIGV 939
Query: 530 VSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSN-NGGSIG-F 587
++PY Q+ I L + SA V+V ++D +QG ++ LI++S VRS G +G
Sbjct: 940 IAPYRQQLRTISGLLQA----SAFTGVEVNTVDRYQGRDKSLILLSFVRSTAEEGPLGEL 995
Query: 588 LSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
L + +R+NVA+TRA+ L +LG+A TL R V + L H
Sbjct: 996 LKDWRRLNVAITRAKSKLLMLGSATTLRRYAPVEKLLNH 1034
Score = 73 (30.8 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 633 LNKPQKQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILHACGFSVLLTSYTH 686
Query: 88 VAIKELAARV 97
A+ + ++
Sbjct: 687 SAVDNILLKL 696
Score = 50 (22.7 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 170 NCVSLYHTYIDNESMKQSEDINGDIIKEK 198
NC +LY +D S SE + GD+++++
Sbjct: 360 NC-ALYQRALDGTSAGVSEGVAGDLLQQE 387
>UNIPROTKB|J3QS41 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC005544 EMBL:AC007448
HGNC:HGNC:16878 ChiTaRS:HELZ Ensembl:ENST00000580168 Uniprot:J3QS41
Length = 1943
Score = 188 (71.2 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 77/257 (29%), Positives = 123/257 (47%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK-HA 393
K LK + ++ +S Y+ + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 760 KEDILKHRVVVVTLNTSQYLCQ-LDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRI 818
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFP 448
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 819 VLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINYT 877
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVV 507
+ FYE K+ S K+ H Y P +F G +E + N EV V
Sbjct: 878 SELFYEGKLMASG--------KQPAHKDFY-PLTFFTARGEDVQEKNSTAFYNNAEVFEV 928
Query: 508 MKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 929 VERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVE-RVLNV--- 984
Query: 565 QGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 985 QGKQFRVLFLSTVRTRH 1001
Score = 85 (35.0 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76
N + L LN Q +AVL+ + LI GP GTGKT T++ + +LQ
Sbjct: 631 NRQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPV--LIIGPYGTGKTFTLAQAVKHILQQ 688
Query: 77 K--FRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 689 QETSRILICTHSNSA 703
Score = 71 (30.1 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHD 627
GFLSN K +N A+TRA+ + ++G+ L R + WE AL H+
Sbjct: 1027 GFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHE 1074
Score = 45 (20.9 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 780 EFINHCKEKSIEGNLEVPKTWTATSNVVRFKNLADNDNN 818
E +H + S N P++W T++ ++N+ N ++
Sbjct: 1787 ELQDHSNQSSF--NFSSPESWVNTTSSTPYQNIPCNGSS 1823
>RGD|1307049 [details] [associations]
symbol:Helz "helicase with zinc finger" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 RGD:1307049
GO:GO:0008270 GO:GO:0003676 CTD:9931 OrthoDB:EOG4NP72K OMA:YRVALLY
GeneTree:ENSGT00550000074391 IPI:IPI00364329 RefSeq:NP_001099318.2
ProteinModelPortal:D4ADZ6 Ensembl:ENSRNOT00000030300 GeneID:287773
KEGG:rno:287773 Uniprot:D4ADZ6
Length = 1964
Score = 188 (71.2 bits), Expect = 3.7e-15, Sum P(4) = 3.7e-15
Identities = 77/257 (29%), Positives = 123/257 (47%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK-HA 393
K LK + ++ +S Y+ + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 760 KEDILKHRVVVVTLNTSQYLCQ-LDLEPGFFTHILLDEAAQAMECETIMPLALATKNTRI 818
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFP 448
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 819 VLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINYT 877
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVV 507
+ FYE K+ S K+ H Y P +F G +E + N EV V
Sbjct: 878 SELFYEGKLMASG--------KQPAHKDFY-PLTFFTARGEDVQEKNSTAFYNNAEVFEV 928
Query: 508 MKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 929 VERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVE-RVLNV--- 984
Query: 565 QGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 985 QGKQFRVLFLSTVRTRH 1001
Score = 90 (36.7 bits), Expect = 3.7e-15, Sum P(4) = 3.7e-15
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76
N + L LN Q +AVL+ + C + LI GP GTGKT T++ + +LQ
Sbjct: 631 NRQWDEQLDPRLNAKQKEAVLAITTPL-CIQLPPV-LIIGPYGTGKTFTLAQAVKHILQQ 688
Query: 77 K--FRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 689 QETSRILICTHSNSA 703
Score = 74 (31.1 bits), Expect = 3.7e-15, Sum P(4) = 3.7e-15
Identities = 36/120 (30%), Positives = 57/120 (47%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHDANARQCFFNADD 639
GFLSN K +N A+TRA+ + ++G+ L R + WE AL H+ ++ +
Sbjct: 1027 GFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHGI-TFEQ 1085
Query: 640 DKDLGKAILAVKKXXXXXXXXXNPESRLFRSQRWKVNFSENFLKSFRKLTSDPTKKSVIH 699
K +A L +KK NP + F + +++ S N S R+ S P KS+ H
Sbjct: 1086 IKAQLEA-LELKKTYVL-----NPLAPEFIPRAFRLQHSGN---SSRQQQSPPKVKSLHH 1136
Score = 37 (18.1 bits), Expect = 3.7e-15, Sum P(4) = 3.7e-15
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 797 PKTWTATSNVVRFKNLADNDNNSGS 821
P++W T++ ++N+ N ++ S
Sbjct: 1823 PESWANTTSSAPYQNIPCNGSSRTS 1847
>UNIPROTKB|F1NPN9 [details] [associations]
symbol:LOC100857488 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR011990 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 Gene3D:1.25.40.10 OMA:YRVALLY
GeneTree:ENSGT00550000074391 EMBL:AADN02030025 IPI:IPI00575663
Ensembl:ENSGALT00000005876 Uniprot:F1NPN9
Length = 1931
Score = 191 (72.3 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 77/257 (29%), Positives = 124/257 (48%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIK-HA 393
K LK+ + ++ +S Y+ + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 748 KEDILKQRVVVVTLNTSQYLCQ-LDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRI 806
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFP 448
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 807 VLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINYT 865
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVV 507
+ FYE K+ S K+ H Y P +F G +E + N EV V
Sbjct: 866 SELFYEGKLMASG--------KQPAHKDFY-PLTFFTARGEDVQEKNSTAFYNNAEVFEV 916
Query: 508 MKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGF 564
++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 917 VERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVSVE-RVLNV--- 972
Query: 565 QGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 973 QGKQFRVLFLSTVRTRH 989
Score = 85 (35.0 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 17 NETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76
N + L LN Q +AVL+ + LI GP GTGKT T++ + +LQ
Sbjct: 619 NRQWDEQLDPRLNAKQKEAVLAITTPLSIQLPPV--LIIGPYGTGKTFTLAQAVKHILQQ 676
Query: 77 K--FRTLVCTPTNVA 89
+ R L+CT +N A
Sbjct: 677 QDTSRILICTHSNSA 691
Score = 71 (30.1 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHD 627
GFLSN K +N A+TRA+ + ++G+ L R + WE AL H+
Sbjct: 1015 GFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHE 1062
Score = 41 (19.5 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 780 EFINHCKEKSIEGNLEVPKTWTATSNVVRFKNLADNDNN 818
E +H + S N P+ W +S+ + N+ N N
Sbjct: 1776 ELQDHSNQSSF--NYSSPELWVNSSSSAPYPNIPCNGAN 1812
>WB|WBGene00014208 [details] [associations]
symbol:ZK1067.2 species:6239 "Caenorhabditis elegans"
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] GeneTree:ENSGT00700000104467
EMBL:Z70038 RefSeq:NP_001254204.1 EnsemblMetazoa:ZK1067.2b
GeneID:174463 KEGG:cel:CELE_ZK1067.2 CTD:174463 WormBase:ZK1067.2b
OMA:THIGVQI Uniprot:E9P860
Length = 2443
Score = 234 (87.4 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 81/269 (30%), Positives = 138/269 (51%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL---PAMVESKVSNEACFGRSLFERL 424
L+++EAA++ E+ I +S ++H V+ GD QL PA+ E V+ S+FERL
Sbjct: 1464 LIVEEAAEVLEAH-IISAMISTVEHVVMIGDHKQLRPNPAVHELGVAYGLRI--SMFERL 1520
Query: 425 SYLGYSKHLLSIQYRMHPSISC-FPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSF 483
G L Q+RM+ +IS FY+N + D+ V Y + G M F
Sbjct: 1521 VERGLPFSQLRQQHRMNLTISDKIVKLSFYDN-VTDAENVGL--YPD--VQG-MATNLFF 1574
Query: 484 INVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEK 543
+ E E S N E+S+ + ++ +L K + + I +++ YSAQ + +
Sbjct: 1575 WSHTSMEESPDEVSWLNKHEISMTVALVKHLLKQNYTTND---IVVLATYSAQKNLMYRE 1631
Query: 544 LGSKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTVRSNNGG----SIGFLSNSKRVNVAL 598
+ + ++ + V ++D FQG E ++I+S VRS+ GG IGFL+ + R+ VAL
Sbjct: 1632 YANVFGSTPDSNVIPVETVDSFQGKERKIVIVSLVRSHRGGRENTGIGFLAVANRICVAL 1691
Query: 599 TRARHCLWILGNARTLTRKKSVWEALVHD 627
TRA+H ++I+GN + +W +V++
Sbjct: 1692 TRAQHGMYIIGNGAYIMNNSELWNKIVNN 1720
Score = 71 (30.1 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP------TNVAIKELAARVVKLV 101
K + LI GPPGTGKT ++ +LQ + + P TN + L R+ +++
Sbjct: 1053 KYELSLIQGPPGTGKTHIGVQIVKTILQNRSYWKITEPILVVCFTNSGLDNLLERIYQMI 1112
Query: 102 KESVE 106
+ E
Sbjct: 1113 ENDEE 1117
Score = 37 (18.1 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 187 SEDINGDIIKEKECGKEADVSDVEIKPFLEFVRDRFKCIAAPLRSCI 233
SED N D ++ E D D E F + +C A + S +
Sbjct: 1264 SEDENKDYFTVEDSDDEEDELDDEKLLDKLFEKMNLECSGADILSAV 1310
>CGD|CAL0001700 [details] [associations]
symbol:orf19.702 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0006449 "regulation of translational termination"
evidence=IEA] InterPro:IPR003593 InterPro:IPR007087
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00382 CGD:CAL0001700 GO:GO:0005524 GO:GO:0008270
GO:GO:0005622 GO:GO:0017111 eggNOG:COG1112 EMBL:AACQ01000183
EMBL:AACQ01000182 RefSeq:XP_711775.1 RefSeq:XP_711793.1
ProteinModelPortal:Q59PZ8 GeneID:3646609 GeneID:3646623
KEGG:cal:CaO19.702 KEGG:cal:CaO19.8321 Uniprot:Q59PZ8
Length = 1105
Score = 189 (71.6 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 68/226 (30%), Positives = 103/226 (45%)
Query: 361 AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL 420
++ + ++IDEA Q E + IPL L ++ VL GD+ QL S + N SL
Sbjct: 800 SLNNVRVVIIDEATQSSEPTTLIPLALPSVEKLVLVGDQKQLSCF--SLIPN---LSLSL 854
Query: 421 FERLSYLGYSK--HLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY 478
FER+ G K H+L QYRMHP IS FP + FY ++D R E + P+Y
Sbjct: 855 FERVLLNGTYKTPHMLDTQYRMHPEISEFPRTKFYGGLLKDGIDANARQSEG-VISSPLY 913
Query: 479 GPYSFINVFGG-REEFIEHSCR--------NMVEVSVVMKILLNLYKAWIDSKEKLSIGI 529
F + G RE+ + + R N E+ + ++L L E+ IGI
Sbjct: 914 ----FWDTKGNAREQSVRNFLREDGGYTYTNRDEIGYIQQVLRTLIITKGVKPEQ--IGI 967
Query: 530 VSPYSAQVVAIQEKL-GSKYVNSAGFAVKV-MSIDGFQGGEEDLII 573
++PYS Q I L +N + +K + ID + + + I
Sbjct: 968 ITPYSGQRDLISATLVKDDVINPSNEQMKTEVDIDDLKNDSKPVTI 1013
Score = 178 (67.7 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 81/303 (26%), Positives = 142/303 (46%)
Query: 351 ASSSYMLHSVAMEPLNFLV-IDEAAQLKESESTIP-LQLSGIKHAVLFGDECQLPAMVES 408
+S L +A+ + LV + + QL S IP L LS + +L G + P M+++
Sbjct: 815 SSEPTTLIPLALPSVEKLVLVGDQKQLS-CFSLIPNLSLSLFERVLLNGTY-KTPHMLDT 872
Query: 409 KVSNEACFGRSLFERLS-YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRS 467
+ S F R Y G K + R + P YF++ K R++S
Sbjct: 873 QYRMHPEI--SEFPRTKFYGGLLKDGIDANARQSEGVISSP-LYFWDTK----GNAREQS 925
Query: 468 YEKRFLHGPMYGPYSFINVFGGREE--FIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKL 525
+ FL G Y++ N R+E +I+ R ++ V + + + ++ +
Sbjct: 926 V-RNFLRED--GGYTYTN----RDEIGYIQQVLRTLIITKGVKPEQIGIITPYSGQRDLI 978
Query: 526 SI-----GIVSPYSAQV---VAIQE-KLGSKYVN-SAGFAVKVMSIDGFQGGEEDLIIIS 575
S +++P + Q+ V I + K SK V + + SID FQG E+D +I+S
Sbjct: 979 SATLVKDDVINPSNEQMKTEVDIDDLKNDSKPVTIHIVSGIMIASIDAFQGREKDYMIMS 1038
Query: 576 TVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFF 635
VRSN G IGFL + +R+NVALTRA++ L ++G+ + L +W+ + ++++
Sbjct: 1039 CVRSNTKGVIGFLRDERRLNVALTRAKYGLIMVGDKKCLQNGDKLWKEYLQYLDSKKAIH 1098
Query: 636 NAD 638
+ D
Sbjct: 1099 DND 1101
Score = 94 (38.1 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTP 85
LN+SQ + V S L +I ++ GPPGTGKT T+ +++ LL + LV
Sbjct: 640 LNESQKKGVQSVLNN-------SITVLQGPPGTGKTSTIYEIILQLLDSLNTYPILVVAA 692
Query: 86 TNVAIKELAARVV 98
+N+AI +A +++
Sbjct: 693 SNIAIDNIAEKLM 705
>FB|FBgn0051368 [details] [associations]
symbol:CG31368 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IC]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 EMBL:AE014297 GO:GO:0016787
GO:GO:0071011 GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 RefSeq:NP_996198.2 UniGene:Dm.10009
ProteinModelPortal:Q7KSN8 SMR:Q7KSN8 PaxDb:Q7KSN8
EnsemblMetazoa:FBtr0301042 GeneID:41437 KEGG:dme:Dmel_CG31368
UCSC:CG31368-RB FlyBase:FBgn0051368 InParanoid:Q7KSN8
OrthoDB:EOG43XSJ9 PhylomeDB:Q7KSN8 GenomeRNAi:41437 NextBio:823855
ArrayExpress:Q7KSN8 Bgee:Q7KSN8 Uniprot:Q7KSN8
Length = 1486
Score = 204 (76.9 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 88/319 (27%), Positives = 154/319 (48%)
Query: 312 RKLQSSFNELNLPSAVEKDLLE---DLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF- 367
R + FNEL A E LL D K +K A + T + + + + L F
Sbjct: 1015 RYISDIFNELEEFRAFE--LLRTGLDRSKYLLVKEAKIIAMTCTHAALKRKELVN-LGFR 1071
Query: 368 ---LVIDEAAQLKESESTIPLQLSG-------IKHAVLFGDECQLPAMVESKVSNE-ACF 416
++++E+AQ+ E E+ IPL L +K ++ GD QLP ++++ + +
Sbjct: 1072 YDNILMEESAQILEIETFIPLLLQNPLDGLNRLKRWIMIGDHHQLPPVIKNMAFQKYSNM 1131
Query: 417 GRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGP 476
+SLF RL LG L Q R SI C + Y+ K+ D + +R K+ G
Sbjct: 1132 EQSLFTRLVRLGVPTVDLDGQGRARASI-CSLYKWRYK-KLEDLQHIFERDEYKQANPGF 1189
Query: 477 MYGPYSFINV--F-G-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
++ Y INV F G G E + +N+ E ++ + + Y + I I++
Sbjct: 1190 VHD-YQLINVEDFKGVGESEPNPYFYQNLAEAEYIVAVYM--YMRLL-GYPAAKISILTT 1245
Query: 533 YSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSN 590
Y+ Q I++ + ++ N+ G+ K+ ++D +QG + D I+IS VR+ ++G L +
Sbjct: 1246 YNGQKHLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTK---AVGHLRD 1302
Query: 591 SKRVNVALTRARHCLWILG 609
+R+ VA++RAR L++ G
Sbjct: 1303 VRRLVVAMSRARLGLYVFG 1321
Score = 80 (33.2 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM- 76
E GP S + + + + +R + + L+ GPPGTGKT ++ +
Sbjct: 798 EARGPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNIYHNH 857
Query: 77 -KFRTLVCTPTNVAIKELAARVVKL 100
RTL+ T +N A+ +L +++ L
Sbjct: 858 PNQRTLIVTHSNQALNQLFEKIMAL 882
>ZFIN|ZDB-GENE-060526-371 [details] [associations]
symbol:mov10b.2 "Moloney leukemia virus 10,
homolog, b.2" species:7955 "Danio rerio" [GO:0000932 "cytoplasmic
mRNA processing body" evidence=ISS] [GO:0035279 "mRNA cleavage
involved in gene silencing by miRNA" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] ZFIN:ZDB-GENE-060526-371
GO:GO:0005524 GO:GO:0003723 GO:GO:0004386 GO:GO:0000932
GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 EMBL:BX323059
HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 IPI:IPI00611260
RefSeq:NP_001037805.1 UniGene:Dr.94434 ProteinModelPortal:Q1LXK5
Ensembl:ENSDART00000078491 GeneID:555950 KEGG:dre:555950 CTD:555950
InParanoid:Q1LXK5 NextBio:20881245 Uniprot:Q1LXK5
Length = 1015
Score = 204 (76.9 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 68/204 (33%), Positives = 103/204 (50%)
Query: 434 LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYG-PYSFINVFGGRE- 491
L + YR HP I PN FY+ +++ + + + H P G P F V G E
Sbjct: 755 LIMNYRSHPYILEVPNRLFYDGELKACADEISSNQYCMWEHLPSKGFPVIFHGVPGKDER 814
Query: 492 EFIEHSCRNMVEVSVVM----KILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSK 547
E S N+ E+++++ K+LL K I IGI++PY QV I+ + +
Sbjct: 815 ESNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDAD 874
Query: 548 --YVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSN-------NGGSIGFLSNSKRVNVA 597
+ + G +KV S++ FQG E +I++STVRS+ +IGFL N KR NVA
Sbjct: 875 KDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETFNIGFLKNEKRFNVA 934
Query: 598 LTRARHCLWILGNARTLTRKKSVW 621
+TRA+ L ++GN L +S W
Sbjct: 935 VTRAKSLLIMVGNPMILRTDES-W 957
Score = 72 (30.4 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 53 LIWGPPGTGKTKT-VSMLLVILLQMKFR-TLVCTPTNVAIKELAARVV 98
L++GPPGTGKT T V + + + L C P+N A +L +++
Sbjct: 552 LVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKLI 599
>ASPGD|ASPL0000064563 [details] [associations]
symbol:AN7014 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0005681 EMBL:BN001304
GO:GO:0004386 GO:GO:0000398 HOGENOM:HOG000170551 GO:GO:0097157
PANTHER:PTHR10887:SF5 ProteinModelPortal:C8VC84
EnsemblFungi:CADANIAT00000462 OMA:TIYENEM Uniprot:C8VC84
Length = 1422
Score = 206 (77.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 86/296 (29%), Positives = 140/296 (47%)
Query: 333 EDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF----LVIDEAAQLKESESTIPLQLS 388
+D +K A + T++ + M + L F +V++EAAQ+ E ES IP L
Sbjct: 1025 KDKANYLLVKEARIIAMTSTHAAMRRQEIAD-LGFHYDNIVMEEAAQITEVESFIPTALQ 1083
Query: 389 GIKHA-------VLFGDECQLPAMVESKVSNE-ACFGRSLFERLSYLGYSKHLLSIQYRM 440
+K VL GD Q ++++ + A F +SLF RL LG L Q R
Sbjct: 1084 NMKEGQLPLKRIVLCGDHLQNSPIIQNLAFRQYAHFEQSLFLRLIRLGVPAITLDQQGRA 1143
Query: 441 HPSIS-CFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINV---FG-GREEFIE 495
PSI+ F + Y+N + + V + K+ G + Y FINV G G E
Sbjct: 1144 RPSIAELF--RWRYQN-LGNLPIVEQAPEFKQANAGFQF-EYQFINVPDYQGTGEREPTP 1199
Query: 496 HSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFA 555
H +N+ E + I + + + I I++ Y+ Q I++ L + + F
Sbjct: 1200 HFVQNLGEAEYAVAIFQYMRLLGYPASK---ISILATYAGQTALIKDVLNHRCSKNTLFG 1256
Query: 556 VK--VMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILG 609
+ V ++D +QG + D II+S R+ ++G+L + +R+ VAL+RAR L+ILG
Sbjct: 1257 MPKIVTTVDRYQGEQNDYIILSLTRTR---TVGYLRDVRRLTVALSRARLGLYILG 1309
Score = 71 (30.1 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 51 IQLIWGPPGTGKTKTVSMLLVILLQMKF---RTLVCTPTNVAIKELAARVVKL 100
+ +I GPPGTGKT + ++ + F RTL+ +N A+ +L ++V L
Sbjct: 824 LTVIVGPPGTGKTDVATQIINNIYH-NFPTERTLLVAHSNQALNQLFQKIVAL 875
>TAIR|locus:2064158 [details] [associations]
symbol:EMB2765 "EMBRYO DEFECTIVE 2765" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901
GO:GO:0005886 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005681 GO:GO:0000398 eggNOG:COG1112 HOGENOM:HOG000170551
KO:K12874 OMA:RTKAVGH GO:GO:0097157 PANTHER:PTHR10887:SF5
EMBL:AY099864 IPI:IPI00544394 RefSeq:NP_850297.1 UniGene:At.23967
ProteinModelPortal:Q8L5Y4 SMR:Q8L5Y4 STRING:Q8L5Y4 PaxDb:Q8L5Y4
PRIDE:Q8L5Y4 EnsemblPlants:AT2G38770.1 GeneID:818459
KEGG:ath:AT2G38770 TAIR:At2g38770 InParanoid:Q8L5Y4
PhylomeDB:Q8L5Y4 ProtClustDB:CLSN2680117 Genevestigator:Q8L5Y4
Uniprot:Q8L5Y4
Length = 1509
Score = 190 (71.9 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
Identities = 86/315 (27%), Positives = 152/315 (48%)
Query: 314 LQSSFNELNLPSAVEKDLLE---DLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF--- 367
L++ F EL A E LL+ D K+A + T + + + ++ L F
Sbjct: 1062 LKTVFQELEECRAFE--LLKSTADRANYLMTKQAKIVAMTCTHAALKRRDFLQ-LGFKYD 1118
Query: 368 -LVIDEAAQLKESESTIPLQLS----G---IKHAVLFGDECQLPAMVESKVSNE-ACFGR 418
L+++E+AQ+ E E+ IP+ L G +K +L GD QLP +V++ + + +
Sbjct: 1119 NLLMEESAQILEIETFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQ 1178
Query: 419 SLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY 478
SLF R LG L+ Q R PS++ N + Y + + D S V++ +R G Y
Sbjct: 1179 SLFTRFVRLGIPYIELNAQGRARPSLAKLYN-WRYRD-LGDLSIVKEAPIFQRANAGFSY 1236
Query: 479 GPYSFINV--FGGREEFIEHSC--RNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYS 534
Y +NV + GR E +N E ++ + + + + + I I++ Y+
Sbjct: 1237 -EYQLVNVPDYEGRGESTPSPWFYQNQGEAEYIVSVYIYMRLLGYPANK---ISILTTYN 1292
Query: 535 AQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSK 592
Q + I++ + + V G KV ++D FQG + D I++S VR+ +G L + +
Sbjct: 1293 GQKLLIRDVINRRCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTR---FVGHLRDVR 1349
Query: 593 RVNVALTRARHCLWI 607
R+ VA++RAR L++
Sbjct: 1350 RLVVAMSRARLGLYV 1364
Score = 85 (35.0 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 51 IQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTNVAIKELAARVVK 99
+ ++ GPPGTGKT T +L +L RTL+ T +N A+ +L ++++
Sbjct: 882 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIME 932
>RGD|1589127 [details] [associations]
symbol:LOC684558 "similar to regulator of nonsense transcripts
1" species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IEA]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA]
GO:GO:0006260 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 IPI:IPI00767398
PRIDE:F1LY19 Ensembl:ENSRNOT00000027268 Uniprot:F1LY19
Length = 391
Score = 207 (77.9 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 57/148 (38%), Positives = 83/148 (56%)
Query: 483 FINVFGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---V 537
F V G+EE S N E + V KI L KA + IGI++PY Q +
Sbjct: 20 FFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYL 76
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
V + GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVA
Sbjct: 77 VQYMQFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVA 135
Query: 598 LTRARHCLWILGNARTLTRKKSVWEALV 625
LTRAR+ + I+GN + L+ K+ +W L+
Sbjct: 136 LTRARYGVIIVGNPKALS-KQPLWNHLL 162
>UNIPROTKB|F1NWZ8 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9031 "Gallus gallus" [GO:0000076
"DNA replication checkpoint" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IEA] [GO:0045740 "positive regulation of DNA replication"
evidence=IEA] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0005634 GO:GO:0006284 GO:GO:0042645 GO:GO:0016890
GO:GO:0045740 GO:GO:0017108 GO:GO:0043137 GO:GO:0005760
GO:GO:0043142 GO:GO:0043504 GO:GO:0006264 PANTHER:PTHR10887:SF14
EMBL:AADN02028013 GeneTree:ENSGT00550000074852 OMA:EHESLCH
IPI:IPI00584167 Ensembl:ENSGALT00000006429 ArrayExpress:F1NWZ8
Uniprot:F1NWZ8
Length = 1009
Score = 178 (67.7 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 69/252 (27%), Positives = 115/252 (45%)
Query: 358 HSVAMEP-LNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACF 416
H + ++ +F ++DEA+Q+ + PL S K VL GD QLP +V++ + +
Sbjct: 766 HPIFVQKQFDFCIVDEASQISQPICLGPLFCS--KRFVLVGDHQQLPPLVQNSEARDLGM 823
Query: 417 GRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIR------DSSTVR------ 464
SLF+RL + L++QYRM+ I N YE K+ ++T
Sbjct: 824 SESLFKRLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSEKVSNATANLPNLKM 883
Query: 465 -KRSY---EKRFLHGPMYG--PYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYK 516
K + K +L + P F+N E + N+ E +V + K
Sbjct: 884 LKLEFADASKTWLKEVLEPDKPVCFLNTEKVPAPEHTEKGGVCNVTEAKLVFFLTTLFIK 943
Query: 517 AWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIIST 576
A + IGI+SPY Q+ I + + N V+V +ID +QG ++ +II+S
Sbjct: 944 AGCRPSD---IGIISPYRHQLKVITDLMARLKENR----VEVNTIDKYQGRDKSIIIVSF 996
Query: 577 VRSNNGGSIGFL 588
VR++N ++G L
Sbjct: 997 VRNSNDENLGAL 1008
Score = 88 (36.0 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK 77
E L +LN Q QA ++Q+ T LI G PGTGKT T+ L+ IL
Sbjct: 634 EAVASILKGSLNKPQKQA----MKQVLLSRDYT--LIVGMPGTGKTTTICALVRILSACG 687
Query: 78 FRTLVCTPTNVAIKELAARVVK 99
F L+ + T+ A+ + ++ K
Sbjct: 688 FSVLLTSFTHTAVDNILLKLAK 709
>DICTYBASE|DDB_G0274797 [details] [associations]
symbol:aqr "intron-binding protein aquarius homolog"
species:44689 "Dictyostelium discoideum" [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR024860 dictyBase:DDB_G0274797
GenomeReviews:CM000151_GR GO:GO:0005681 EMBL:AAFI02000012
GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 RefSeq:XP_643918.1 ProteinModelPortal:Q555Z2
PRIDE:Q555Z2 EnsemblProtists:DDB0233439 GeneID:8619345
KEGG:ddi:DDB_G0274797 InParanoid:Q555Z2 ProtClustDB:CLSZ2431000
Uniprot:Q555Z2
Length = 1487
Score = 172 (65.6 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 68/233 (29%), Positives = 117/233 (50%)
Query: 389 GIKHAVLFGDECQLPAMVESK-VSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSIS-C 446
G+K +L GD QLP +V+++ ++ + F +SLF RL L L Q R PSIS
Sbjct: 1194 GLKRVILIGDHNQLPPIVQNQSLAKYSHFDQSLFTRLIRLEIPHITLDRQGRSRPSISEL 1253
Query: 447 FPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINV-----FG-GREEFIEHSCRN 500
F S+ Y+ ++D V+++ K G Y Y INV +G G E + +N
Sbjct: 1254 F--SWKYKG-LQDLPLVKEQLQFKLANPGLAYD-YQLINVDESDGYGVGESEPTPYFYQN 1309
Query: 501 MVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYV------NSAGF 554
+ E ++ + L S EK+++ ++ Y+ Q +++ +K G
Sbjct: 1310 LGEAEYIVAMFQYLIAIGYPS-EKITV--LTTYNGQKNLLRDVFKAKCTPQDPKKTQYGL 1366
Query: 555 AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWI 607
+K+ +ID +QG + D+I++S VR+ G I + +R+ VA++RAR L+I
Sbjct: 1367 PLKITTIDKYQGQQNDIILLSLVRTKQYGHI---RDVRRLIVAMSRARLGLYI 1416
Score = 88 (36.0 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 45/174 (25%), Positives = 77/174 (44%)
Query: 51 IQLIWGPPGTGKTKTVSMLLVILLQMK--FRTLVCTPTNVAIKELAARVVKL-VKESVER 107
+ LI GPPGTGKT ++ + RTL+ T +N A+ +L ++ +L + E
Sbjct: 881 LTLIVGPPGTGKTDIAVQIISNIYHSSPNERTLIITHSNQALNQLFEKIYRLDINE---- 936
Query: 108 DCRDALFFPLGDILLLGNNERLK--VDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMV 165
R L G L N K +G + +LD R+K+L D L S V
Sbjct: 937 --RYLLRLGHGQKQLSSTNSTQKDFTKTGRIDFWLDLRLKKL-DQVDKLAK-SISVTDDV 992
Query: 166 DFL-DNCVSLYHTYIDNESMKQSEDINGDIIKEKECGKEADVSDV-EIKPFLEF 217
+ D + + +I + K D++ ++++ + G E + + E PF +F
Sbjct: 993 SYTCDTALHFFSYHILSRFEKFQYDLS--LLQDDDDGDEKKIKFIKENYPFKKF 1044
Score = 58 (25.5 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 308 HFVLRKLQSSFNEL-NLPSAVEKDLLE----DLLKS-------FCLKRASLFLSTASSSY 355
H L ++ + EL N + K+L E +LLKS LK++ + T + +
Sbjct: 1070 HQSLLNIKKNLIELWNYIKEIFKELEECKVFELLKSPNDRYNYLLLKQSKIVAMTCTHAA 1129
Query: 356 MLHSVAMEPLNF----LVIDEAAQLKESESTIPLQL 387
+ + + L F L+++E+AQ+ + ES IPLQL
Sbjct: 1130 LKRNELLR-LGFKFDNLLMEESAQISDIESFIPLQL 1164
Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 308 HFVLRKLQSSFNELNLPSAVEKDLLEDLL 336
HF+L+ QS F + N + K +LE LL
Sbjct: 319 HFILKTSQSEFLKSNDDKS--KSVLEGLL 345
>UNIPROTKB|F1MKC7 [details] [associations]
symbol:Bt.110099 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR011990 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 Gene3D:1.25.40.10 OMA:YRVALLY
GeneTree:ENSGT00550000074391 EMBL:DAAA02049790 EMBL:DAAA02049791
EMBL:DAAA02049792 EMBL:DAAA02049793 EMBL:DAAA02049794
EMBL:DAAA02049795 EMBL:DAAA02049796 EMBL:DAAA02049797
EMBL:DAAA02049798 EMBL:DAAA02049799 IPI:IPI00698970
Ensembl:ENSBTAT00000006233 Uniprot:F1MKC7
Length = 1941
Score = 193 (73.0 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 79/258 (30%), Positives = 126/258 (48%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIKHA- 393
K LK + ++ +S Y+ + +EP F +++DEAAQ E E+ +PL L+ +H
Sbjct: 764 KEDILKHRVVVVTLNTSQYLCQ-LDLEPGFFTHILLDEAAQAMECETIMPLALA-TRHTR 821
Query: 394 -VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCF 447
VL GD QL V S+ + E SL +RL Y Y LL YR H +I +
Sbjct: 822 VVLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAIINY 880
Query: 448 PNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSV 506
+ FYE K+ S K+ K F Y P +F G +E + N EV
Sbjct: 881 TSELFYEGKLMASG---KQPAHKEF-----Y-PLTFFTARGEDVQEKNSTAFYNNAEVFE 931
Query: 507 VMKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDG 563
V++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ +V+++
Sbjct: 932 VVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVE-RVLNV-- 988
Query: 564 FQGGEEDLIIISTVRSNN 581
QG + ++ +STVR+ +
Sbjct: 989 -QGKQFRVLFLSTVRTRH 1005
Score = 76 (31.8 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWE---ALVHDANA 630
GFLSN K +N A+TRA+ + ++G+ L R + WE AL H+ N+
Sbjct: 1031 GFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNS 1081
>ZFIN|ZDB-GENE-040426-1189 [details] [associations]
symbol:aqr "aquarius homolog (mouse)" species:7955
"Danio rerio" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 ZFIN:ZDB-GENE-040426-1189
GO:GO:0005681 GO:GO:0000398 CTD:9716 HOGENOM:HOG000170551
HOVERGEN:HBG080430 KO:K12874 GO:GO:0097157 PANTHER:PTHR10887:SF5
EMBL:BC160661 IPI:IPI00861759 RefSeq:NP_956758.2 UniGene:Dr.17308
ProteinModelPortal:B1H1M2 DNASU:393436 GeneID:393436
KEGG:dre:393436 eggNOG:NOG272077 NextBio:20814473
ArrayExpress:B1H1M2 Uniprot:B1H1M2
Length = 1525
Score = 181 (68.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 84/319 (26%), Positives = 147/319 (46%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLN 366
C+ +RK+ + E + L D K +K A + T + + + +E L
Sbjct: 996 CYRHIRKIFTQLEEFRAFELLRSGL--DRSKYLLVKEAKIIAMTCTHAALKRHDLVE-LG 1052
Query: 367 F----LVIDEAAQLKESESTIPLQL-------SGIKHAVLFGDECQLPAMVESKVSNE-A 414
F ++++EAAQ+ E E+ IPL L S +K ++ GD QLP ++++ + +
Sbjct: 1053 FKYDNILMEEAAQILEIETFIPLLLQNPEDGYSRLKRWIMIGDHHQLPPVIKNMAFQKYS 1112
Query: 415 CFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLH 474
+SLF R LG L Q R S+ C N Y + K + + E R +
Sbjct: 1113 NMEQSLFTRFVRLGVPTVDLDAQGRARASL-C--NLYNWRYKQLGNLPHVQLQPEFRTPN 1169
Query: 475 GPMYGPYSFINV--FGG--REEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIV 530
+ INV F G E + +N+ E + L +Y + + I I+
Sbjct: 1170 PGFTFDFQLINVEDFNGVGESEPNPYFYQNLAEAEY--SVALYMYMRLLGYPAE-RISIL 1226
Query: 531 SPYSAQVVAIQEKLGSKYVNSAGFAV--KVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
+ Y+ Q I++ + + +++ F KV ++D FQG + D II+S VR+ ++G L
Sbjct: 1227 TTYNGQKHLIRDVIHQRCASNSFFGQPSKVTTVDRFQGQQNDYIILSLVRTK---AVGHL 1283
Query: 589 SNSKRVNVALTRARHCLWI 607
+ +R+ VA++RAR L+I
Sbjct: 1284 RDVRRLVVAMSRARLGLYI 1302
Score = 83 (34.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 40 LRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF---RTLVCTPTNVAIKELAAR 96
+ +R + + ++ GPPGTGKT V++ ++ L F RTL+ T +N A+ +L +
Sbjct: 806 IEAIRAGMQPGLTMVVGPPGTGKTN-VAVQIISNLYHNFPEQRTLIVTHSNQALNQLFEK 864
Query: 97 VVKL 100
++ L
Sbjct: 865 IMAL 868
>UNIPROTKB|Q5ZKG3 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9031 "Gallus gallus" [GO:0005524
"ATP binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=ISS] [GO:0000076 "DNA replication
checkpoint" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0004518
"nuclease activity" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
activity" evidence=ISS] [GO:0043142 "single-stranded DNA-dependent
ATPase activity" evidence=ISS] [GO:0017108 "5'-flap endonuclease
activity" evidence=ISS] [GO:0045740 "positive regulation of DNA
replication" evidence=ISS] [GO:0006264 "mitochondrial DNA
replication" evidence=ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=ISS] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0005760
"gamma DNA polymerase complex" evidence=ISS] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0051539 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0000729 GO:GO:0017108 GO:GO:0000076 GO:GO:0043137
GO:GO:0043139 GO:GO:0043142 GO:GO:0006264 PANTHER:PTHR10887:SF14
EMBL:AJ720121 EMBL:AADN02028013 IPI:IPI00596013
RefSeq:NP_001006497.1 UniGene:Gga.42409 STRING:Q5ZKG3 GeneID:423688
KEGG:gga:423688 CTD:1763 HOGENOM:HOG000168456 HOVERGEN:HBG081456
KO:K10742 NextBio:20826122 Uniprot:Q5ZKG3
Length = 992
Score = 175 (66.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 77/272 (28%), Positives = 121/272 (44%)
Query: 358 HSVAMEP-LNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACF 416
H + ++ +F ++DEA+Q+ + PL S K VL GD QLP +V++ + +
Sbjct: 717 HPIFVQKQFDFCIVDEASQISQPICLGPLFCS--KRFVLVGDHQQLPPLVQNSEARDLGM 774
Query: 417 GRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGP 476
SLF+RL + L++QYRM+ I N YE K+ S K S L
Sbjct: 775 SESLFKRLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGS--EKVSNATANL--- 829
Query: 477 MYGPYSFINVFGGREEFIEHSCRNMVEVSVVMK--ILLNLYKAWIDSKEKLSIGIVSPYS 534
P N+ + EF + S + EV K LN KA + IGI+SPY
Sbjct: 830 ---P----NLKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPSD---IGIISPYR 879
Query: 535 AQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRV 594
Q+ I + + N + G + +I+ SN+ L + +R+
Sbjct: 880 HQLKVITDLMARLKENRVEVNT-IDKYQGRD--KSIIIVSFVRNSNDENLGALLKDWRRL 936
Query: 595 NVALTRARHCLWILGNARTLTRKKSVWEALVH 626
NVA+TRA+H L ++G +L R + + L H
Sbjct: 937 NVAITRAKHKLIMVGCVPSLRRYPPLEKLLCH 968
Score = 84 (34.6 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQ---------LIWGPPGTGKTKTVSMLLVILL 74
LSS L +AV S L+ + K ++ LI G PGTGKT T+ L+ IL
Sbjct: 576 LSSVLPPEAKEAVASILKGLNKPQKQAMKQVLLSRDYTLIVGMPGTGKTTTICALVRILS 635
Query: 75 QMKFRTLVCTPTNVAIKELAARVVK 99
F L+ + T+ A+ + ++ K
Sbjct: 636 ACGFSVLLTSFTHTAVDNILLKLAK 660
>UNIPROTKB|Q81NI5 [details] [associations]
symbol:BAS2982 "Conserved domain protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR RefSeq:NP_845517.1 RefSeq:YP_019848.1
RefSeq:YP_029239.1 ProteinModelPortal:Q81NI5 IntAct:Q81NI5
DNASU:1087476 EnsemblBacteria:EBBACT00000012886
EnsemblBacteria:EBBACT00000015522 EnsemblBacteria:EBBACT00000022854
GeneID:1087476 GeneID:2817117 GeneID:2850799 KEGG:ban:BA_3207
KEGG:bar:GBAA_3207 KEGG:bat:BAS2982 HOGENOM:HOG000093512
OMA:EVSMAYV ProtClustDB:CLSK916959
BioCyc:BANT260799:GJAJ-3044-MONOMER
BioCyc:BANT261594:GJ7F-3148-MONOMER Uniprot:Q81NI5
Length = 759
Score = 170 (64.9 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 98/353 (27%), Positives = 154/353 (43%)
Query: 302 KRRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVA 361
KR E LRK ++ E VEK+ +E+ K LS + +++
Sbjct: 287 KRMQEIESDLRKQRAKIKE------VEKEYIENA------KVIGATLSKCAIDSLIYE-- 332
Query: 362 MEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLP--AMVESKVSNEACFGRS 419
+ +V+DE + + + L K V+ GD QLP AM ++ + G
Sbjct: 333 -RTFDLVVVDEVSMAFVPQIALAASLG--KRIVVCGDFLQLPPIAMANHELVRK-WLGED 388
Query: 420 LFERLSYL-GYSK---H----LLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKR 471
+F + +K H +L Q RMH IS F NS+ Y+N++ D +V +R E
Sbjct: 389 MFYHAGIVESVNKSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERK-ELA 447
Query: 472 FLHGPMYGPYSFI---NVFGG--REEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS 526
L P S + + G ++ S N++ V M+++L +D + S
Sbjct: 448 QLQ-PFANEASVLFDTSQMGAFSLKDAASGSRFNIMSGLVAMQMMLI---GLLDGVQ--S 501
Query: 527 IGIVSPYSAQV----VAIQEKLG-SKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN 581
IGIV+PY AQ I+E L +KY N V ++ FQG E D++I TV S
Sbjct: 502 IGIVTPYRAQSRFLSTCIREMLQRTKYQN---IPVLAATVHKFQGSERDMMIFDTVDSYP 558
Query: 582 GGSIGFL----SNSKRVNVALTRARHCLWILGNA----RTLTRKKSVWEALVH 626
G L N + VNVA+TRAR L + + L+RK+++ + H
Sbjct: 559 QERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMCKNLSRKQALSQLTAH 611
Score = 86 (35.3 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 54 IWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKE 103
+WGPPGTGK+ +S ++ Q LV +N A+ L + V K +++
Sbjct: 170 VWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEK 219
Score = 42 (19.8 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 609 GNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAILAVKK 652
G+ T + +WE + N ++ K L K ILA K+
Sbjct: 616 GDVYDRTTSRQLWERKISKRLRWFMEMNLEEPKGLLKDILAAKR 659
>TIGR_CMR|BA_3207 [details] [associations]
symbol:BA_3207 "conserved domain protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
RefSeq:NP_845517.1 RefSeq:YP_019848.1 RefSeq:YP_029239.1
ProteinModelPortal:Q81NI5 IntAct:Q81NI5 DNASU:1087476
EnsemblBacteria:EBBACT00000012886 EnsemblBacteria:EBBACT00000015522
EnsemblBacteria:EBBACT00000022854 GeneID:1087476 GeneID:2817117
GeneID:2850799 KEGG:ban:BA_3207 KEGG:bar:GBAA_3207 KEGG:bat:BAS2982
HOGENOM:HOG000093512 OMA:EVSMAYV ProtClustDB:CLSK916959
BioCyc:BANT260799:GJAJ-3044-MONOMER
BioCyc:BANT261594:GJ7F-3148-MONOMER Uniprot:Q81NI5
Length = 759
Score = 170 (64.9 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 98/353 (27%), Positives = 154/353 (43%)
Query: 302 KRRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVA 361
KR E LRK ++ E VEK+ +E+ K LS + +++
Sbjct: 287 KRMQEIESDLRKQRAKIKE------VEKEYIENA------KVIGATLSKCAIDSLIYE-- 332
Query: 362 MEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLP--AMVESKVSNEACFGRS 419
+ +V+DE + + + L K V+ GD QLP AM ++ + G
Sbjct: 333 -RTFDLVVVDEVSMAFVPQIALAASLG--KRIVVCGDFLQLPPIAMANHELVRK-WLGED 388
Query: 420 LFERLSYL-GYSK---H----LLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKR 471
+F + +K H +L Q RMH IS F NS+ Y+N++ D +V +R E
Sbjct: 389 MFYHAGIVESVNKSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERK-ELA 447
Query: 472 FLHGPMYGPYSFI---NVFGG--REEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS 526
L P S + + G ++ S N++ V M+++L +D + S
Sbjct: 448 QLQ-PFANEASVLFDTSQMGAFSLKDAASGSRFNIMSGLVAMQMMLI---GLLDGVQ--S 501
Query: 527 IGIVSPYSAQV----VAIQEKLG-SKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN 581
IGIV+PY AQ I+E L +KY N V ++ FQG E D++I TV S
Sbjct: 502 IGIVTPYRAQSRFLSTCIREMLQRTKYQN---IPVLAATVHKFQGSERDMMIFDTVDSYP 558
Query: 582 GGSIGFL----SNSKRVNVALTRARHCLWILGNA----RTLTRKKSVWEALVH 626
G L N + VNVA+TRAR L + + L+RK+++ + H
Sbjct: 559 QERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMCKNLSRKQALSQLTAH 611
Score = 86 (35.3 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 54 IWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKE 103
+WGPPGTGK+ +S ++ Q LV +N A+ L + V K +++
Sbjct: 170 VWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEK 219
Score = 42 (19.8 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 609 GNARTLTRKKSVWEALVHDANARQCFFNADDDKDLGKAILAVKK 652
G+ T + +WE + N ++ K L K ILA K+
Sbjct: 616 GDVYDRTTSRQLWERKISKRLRWFMEMNLEEPKGLLKDILAAKR 659
>UNIPROTKB|J9P7Z9 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:AAEX03011080 EMBL:AAEX03011081
Ensembl:ENSCAFT00000044224 Uniprot:J9P7Z9
Length = 983
Score = 178 (67.7 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 80/245 (32%), Positives = 118/245 (48%)
Query: 361 AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL 420
+MEP + + I ++KE+++ P G VL GD QL ++ S ++ + G SL
Sbjct: 630 SMEPESLVAIAGLMEVKETDN--P---GG--QLVLAGDPRQLGPVLRSPLTQKHGLGYSL 682
Query: 421 FERL-SYL--------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRSY 468
ERL +Y GY+ ++ YR HP+I PN +YE +++ + V R
Sbjct: 683 LERLLTYNALYKKGSNGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDR-- 740
Query: 469 EKRFLH--G-PMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL-LNLYKAWIDSK 522
+RF H G P G P F V G E E S N E + V L L L + K
Sbjct: 741 -ERFCHWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGK 799
Query: 523 EKLS---IGIVSPYSAQVVAIQE---KLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIIS 575
+LS +G++SPY QV I+ KL + +KV S++ FQG E +I+IS
Sbjct: 800 ARLSPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILIS 859
Query: 576 TVRSN 580
TVRS+
Sbjct: 860 TVRSS 864
Score = 150 (57.9 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 62/189 (32%), Positives = 87/189 (46%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL-LNLYKAWIDSKEKLS---IGIVSPYS 534
P F V G E E S N E + V L L L + K +LS +G++SPY
Sbjct: 755 PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYR 814
Query: 535 AQVVAIQE---KLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGG------- 583
QV I+ KL + +KV S++ FQG E +I+ISTVRS+
Sbjct: 815 KQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDF 874
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH----DANARQCFFNADD 639
++GFL N KR NVA+TRA+ L ++GN L W+ + + C F A
Sbjct: 875 NLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKVFLEFCKENGGYTGCPFPAKL 933
Query: 640 DKDLGKAIL 648
D G+ +L
Sbjct: 934 DLQQGQNLL 942
Score = 77 (32.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 53 LIWGPPGTGKTKT-VSMLLVILLQM-KFRTLVCTPTNVAIKELAARVVKLVKESVER 107
+I+GPPGTGKT T V + ++ + K L C P+N L R+ + S+ R
Sbjct: 501 IIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYR 557
>UNIPROTKB|F1NNW1 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9031
"Gallus gallus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IEA] GO:GO:0000932 GO:GO:0035279
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 OMA:VRFFKLD IPI:IPI00594294
EMBL:AADN02045008 Ensembl:ENSGALT00000002368 Uniprot:F1NNW1
Length = 735
Score = 165 (63.1 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 60/157 (38%), Positives = 82/157 (52%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYKAW-------IDSKEKLSIGIVS 531
P F V G E E S N E+ VV++ L L ++ I KE IGI+S
Sbjct: 540 PIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKE---IGIIS 596
Query: 532 PYSAQVVAIQEKLGSK-----YVNSAGFAVKVMSIDGFQGGEEDLIIISTVRS------- 579
PY QV I+ + SK + G +KV S++ FQG E +I+ISTVRS
Sbjct: 597 PYRKQVEKIRLAITSKDPVLRALPDIG-QLKVGSVEEFQGQERRVILISTVRSCSEYLQL 655
Query: 580 NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTR 616
+ +GFL N KR+NVALTRA+ L ++GNA L++
Sbjct: 656 DQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSK 692
Score = 155 (59.6 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 70/214 (32%), Positives = 102/214 (47%)
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLS-----YL----GYSKHLLSI---QYRMH 441
VL GD QL ++ S ++ + G SL ERL Y GY+ ++ YR H
Sbjct: 439 VLAGDPQQLGPVLRSPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVTKLLWNYRSH 498
Query: 442 PSISCFPNSYFYENKIR--DSSTVRKRSYEKRFLHGPMYG-PYSFINVFGGRE-EFIEHS 497
+I PN FY+++++ + S R++ + P G P F V G E E S
Sbjct: 499 KAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEELPNRGVPIIFHGVCGEDEREAKSPS 558
Query: 498 CRNMVEVSVVMKILLNLYKAW-------IDSKEKLSIGIVSPYSAQVVAIQEKLGSK--- 547
N E+ VV++ L L ++ I KE IGI+SPY QV I+ + SK
Sbjct: 559 FFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKE---IGIISPYRKQVEKIRLAITSKDPV 615
Query: 548 --YVNSAGFAVKVMSIDGFQGGEEDLIIISTVRS 579
+ G +KV S++ FQG E +I+ISTVRS
Sbjct: 616 LRALPDIG-QLKVGSVEEFQGQERRVILISTVRS 648
Score = 87 (35.7 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT-VSMLLVILLQMK-FRTLVCTPT 86
N+ Q QAV + M + LI+GPPGTGKT T V + + K R L C P+
Sbjct: 260 NEEQCQAVKHIVTGMS---RPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPS 316
Query: 87 NVAIKELAARVV 98
N A L R++
Sbjct: 317 NSAADLLCQRLL 328
>UNIPROTKB|F1P7T4 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035279 "mRNA cleavage involved in gene
silencing by miRNA" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 GO:GO:0000932 GO:GO:0035279 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
OMA:VRFFKLD EMBL:AAEX03011080 EMBL:AAEX03011081 RefSeq:XP_540337.3
Ensembl:ENSCAFT00000021339 GeneID:483219 KEGG:cfa:483219
Uniprot:F1P7T4
Length = 1003
Score = 178 (67.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 80/245 (32%), Positives = 118/245 (48%)
Query: 361 AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL 420
+MEP + + I ++KE+++ P G VL GD QL ++ S ++ + G SL
Sbjct: 650 SMEPESLVAIAGLMEVKETDN--P---GG--QLVLAGDPRQLGPVLRSPLTQKHGLGYSL 702
Query: 421 FERL-SYL--------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRSY 468
ERL +Y GY+ ++ YR HP+I PN +YE +++ + V R
Sbjct: 703 LERLLTYNALYKKGSNGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDR-- 760
Query: 469 EKRFLH--G-PMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL-LNLYKAWIDSK 522
+RF H G P G P F V G E E S N E + V L L L + K
Sbjct: 761 -ERFCHWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGK 819
Query: 523 EKLS---IGIVSPYSAQVVAIQE---KLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIIS 575
+LS +G++SPY QV I+ KL + +KV S++ FQG E +I+IS
Sbjct: 820 ARLSPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILIS 879
Query: 576 TVRSN 580
TVRS+
Sbjct: 880 TVRSS 884
Score = 150 (57.9 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 62/189 (32%), Positives = 87/189 (46%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL-LNLYKAWIDSKEKLS---IGIVSPYS 534
P F V G E E S N E + V L L L + K +LS +G++SPY
Sbjct: 775 PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYR 834
Query: 535 AQVVAIQE---KLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGG------- 583
QV I+ KL + +KV S++ FQG E +I+ISTVRS+
Sbjct: 835 KQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDF 894
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH----DANARQCFFNADD 639
++GFL N KR NVA+TRA+ L ++GN L W+ + + C F A
Sbjct: 895 NLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKVFLEFCKENGGYTGCPFPAKL 953
Query: 640 DKDLGKAIL 648
D G+ +L
Sbjct: 954 DLQQGQNLL 962
Score = 77 (32.2 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 53 LIWGPPGTGKTKT-VSMLLVILLQM-KFRTLVCTPTNVAIKELAARVVKLVKESVER 107
+I+GPPGTGKT T V + ++ + K L C P+N L R+ + S+ R
Sbjct: 521 IIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYR 577
>UNIPROTKB|F1PA16 [details] [associations]
symbol:AQR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901
GO:GO:0000398 OMA:RTKAVGH GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467
EMBL:AAEX03016041 Ensembl:ENSCAFT00000013319 Uniprot:F1PA16
Length = 1483
Score = 170 (64.9 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 82/319 (25%), Positives = 151/319 (47%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYML-HSVAMEPL 365
C ++K+ + E + L D K +K A + T + + + H +
Sbjct: 996 CFRHIKKIFTQLEEFRASELLRSGL--DRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGF 1053
Query: 366 NF--LVIDEAAQLKESESTIPLQL-------SGIKHAVLFGDECQLPAMVESKVSNE-AC 415
+ ++++EAAQ+ E E+ IPL L S +K ++ GD QLP ++++ + +
Sbjct: 1054 KYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSN 1113
Query: 416 FGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG 475
+SLF R +G L Q R S+ C ++ Y+N + + V+ G
Sbjct: 1114 MEQSLFTRFVRVGVPTVDLDAQGRARASL-CNLYNWRYKN-LGNLPHVQLLPEFSTANAG 1171
Query: 476 PMYGPYSFINV--F-G-GREEFIEHSCRNMVEVSVVMKILLNLYKAWID-SKEKLSIGIV 530
+Y + INV F G G E + +N+ E V + L +Y + +K+SI +
Sbjct: 1172 LLYD-FQLINVEDFQGVGESEPNPYFYQNLGEAEYV--VALFMYMCLLGYPADKISI--L 1226
Query: 531 SPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
+ Y+ Q I++ + + ++ G KV ++D FQG + D I++S VR+ ++G L
Sbjct: 1227 TTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHL 1283
Query: 589 SNSKRVNVALTRARHCLWI 607
+ +R+ VA++RAR L+I
Sbjct: 1284 RDVRRLVVAMSRARLGLYI 1302
Score = 89 (36.4 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 40 LRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPTNVAIKELAARVV 98
+ +R + + ++ GPPGTGKT ++ + + RTL+ TP+N A+ +L +++
Sbjct: 807 IEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNIYHFPEQRTLIVTPSNPALNQLFEKIM 866
Query: 99 KL 100
L
Sbjct: 867 AL 868
>UNIPROTKB|Q8QHA5 [details] [associations]
symbol:dna2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:8355 "Xenopus laevis" [GO:0000076
"DNA replication checkpoint" evidence=ISS] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006264
"mitochondrial DNA replication" evidence=ISS] [GO:0006284
"base-excision repair" evidence=ISS] [GO:0016890 "site-specific
endodeoxyribonuclease activity, specific for altered base"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=ISS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISS] [GO:0045740 "positive regulation of DNA
replication" evidence=ISS] [GO:0005760 "gamma DNA polymerase
complex" evidence=ISS] InterPro:IPR026851 InterPro:IPR014808
Pfam:PF08696 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0016890 GO:GO:0045740 GO:GO:0000729 GO:GO:0017108
GO:GO:0000076 GO:GO:0043137 GO:GO:0043139 GO:GO:0043142
GO:GO:0006264 PANTHER:PTHR10887:SF14 CTD:1763 HOVERGEN:HBG081456
KO:K10742 EMBL:AF474372 RefSeq:NP_001079231.1 UniGene:Xl.17390
ProteinModelPortal:Q8QHA5 GeneID:378492 KEGG:xla:378492
Xenbase:XB-GENE-5829000 Uniprot:Q8QHA5
Length = 1053
Score = 177 (67.4 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 46/111 (41%), Positives = 72/111 (64%)
Query: 509 KILLNLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNS-AGFAVKVMSIDGFQG 566
K++ +L K ++ + + S IGI++PY Q+ K+ S Y NS + AV+V ++D +QG
Sbjct: 918 KLVFHLTKLYLKAGCRPSDIGIIAPYRQQL-----KMISNYFNSLSASAVEVNTVDKYQG 972
Query: 567 GEEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTR 616
++ +II+S VRSN G +G L + +R+NVALTRA+H L +LG TL R
Sbjct: 973 RDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNR 1023
Score = 166 (63.5 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 83/310 (26%), Positives = 141/310 (45%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLE----DLLKSFCLKRASLFLSTASSSYMLHSVAM---E 363
L+K Q F L + D+ E ++ K+ +K S +S ++ + M
Sbjct: 690 LKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAKSIKSLSALEELYNSQPVVATTCMGVNH 749
Query: 364 PL------NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFG 417
P+ +F ++DEA+Q+ + PL + VL GD QLP +V+S + E
Sbjct: 750 PIFTRRRFDFCIVDEASQISQPICLGPLFFAD--RFVLVGDHQQLPPLVKSAEARELGMS 807
Query: 418 RSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKI-----RDSSTVRKRSYEKRF 472
SLF+RL + L++QYRM+ I N YE ++ R S+ V + + K
Sbjct: 808 ESLFKRLERNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTL 867
Query: 473 LHGPMYGPYSFINVFGGREEFIEHS---C-RNMVEVSVVMKILLNLYKAWIDSK-----E 523
L + S +++ ++ +E S C N ++ + WI++K
Sbjct: 868 LLELEFRE-SQESMW--IKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLT 924
Query: 524 KLSIGI-VSPYSAQVVAI---QEKLGSKYVNS-AGFAVKVMSIDGFQGGEEDLIIISTVR 578
KL + P ++A Q K+ S Y NS + AV+V ++D +QG ++ +II+S VR
Sbjct: 925 KLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVR 984
Query: 579 SNNGGSIGFL 588
SN G +G L
Sbjct: 985 SNIDGKLGDL 994
Score = 78 (32.5 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLV 82
S+ LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+
Sbjct: 622 SILRGLNKPQKQAMKRVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYACGFSVLL 675
Query: 83 CTPTNVAIKELAARVVK 99
+ T+ A+ + ++ K
Sbjct: 676 TSYTHSAVDNILLKLKK 692
>WB|WBGene00016566 [details] [associations]
symbol:eri-7 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0019079 "viral
genome replication" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 GO:GO:0000003
GO:GO:0017111 InterPro:IPR014001 SMART:SM00487 EMBL:FO080509
GeneTree:ENSGT00700000104572 PIR:T28788 RefSeq:NP_491374.2
ProteinModelPortal:O01976 SMR:O01976 EnsemblMetazoa:C41D11.7
GeneID:172047 KEGG:cel:CELE_C41D11.7 UCSC:C41D11.7.1 CTD:172047
WormBase:C41D11.7 InParanoid:O01976 OMA:NDEEMIN NextBio:873807
ArrayExpress:O01976 Uniprot:O01976
Length = 625
Score = 145 (56.1 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 48/205 (23%), Positives = 97/205 (47%)
Query: 437 QYRMHPSISCFPNSY--FYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFI 494
+Y +H ++ P + ++ + +++ +R EKR L + + ++ ++ F
Sbjct: 332 EYSLHTILNPQPKKFRNLFDPLVLIDTSL-ERDVEKR-LETYEHAVFDTNSINKTKQGF- 388
Query: 495 EHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQEKLGSKYVNS 551
S N+ E + + L K + + I I++PY Q V + E+ G++ +
Sbjct: 389 --SYANLAEAKIAIGHYQRLLKYGVQPSD---IAIITPYKGQTSLVTKLMEEFGAETGYT 443
Query: 552 AGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNA 611
+ ++D QG E +++I + VRSN ++GF+S +R+NV +TRA+ +GN
Sbjct: 444 DFVQTTIGTVDSVQGKEYEVVIFTMVRSNPRKTMGFVSELRRLNVVITRAKRHFMFIGNG 503
Query: 612 RTLTRKKSVWEALVHDA--NARQCF 634
L K ++D NA++ F
Sbjct: 504 YLLAESKKDEIRKLYDCFKNAKRRF 528
Score = 120 (47.3 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 41/124 (33%), Positives = 66/124 (53%)
Query: 369 VIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEA-CFG--RSLFERL- 424
+IDEAAQ+ E++ T P +K V+ GD QLPA+V ++EA FG S+ +R+
Sbjct: 236 IIDEAAQVMEAQ-TWPAVYK-MKRIVMAGDPKQLPALV---FTDEAKAFGLQNSVMDRIL 290
Query: 425 -SYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSF 483
+S +L QYR + I+ + N+ FY N+++ + V+ Y + P P F
Sbjct: 291 EKKNNFSWIMLENQYRSNAKIATWSNTCFYHNQLK--TDVKCHEYSLHTILNPQ--PKKF 346
Query: 484 INVF 487
N+F
Sbjct: 347 RNLF 350
Score = 104 (41.7 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNV 88
N+ Q A+ L + R + I GPPGTGKT T+++LL L+Q K + +V PT
Sbjct: 67 NEKQRTAIKMALNENR-----KLVCIQGPPGTGKTFTLTLLLCRLIQQKKQVVVLAPTRE 121
Query: 89 AIKELAARVVKLVK 102
A+ + K +K
Sbjct: 122 ALANIRMMTKKTLK 135
>FB|FBgn0030170 [details] [associations]
symbol:CG2990 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] [GO:0043142 "single-stranded
DNA-dependent ATPase activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 EMBL:AE014298 GO:GO:0006200
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
KO:K10742 GeneTree:ENSGT00550000074852 OMA:EHESLCH
FlyBase:FBgn0030170 EMBL:BT088860 RefSeq:NP_727386.1
UniGene:Dm.17561 SMR:Q8IRL9 STRING:Q8IRL9
EnsemblMetazoa:FBtr0071415 GeneID:31934 KEGG:dme:Dmel_CG2990
UCSC:CG2990-RB InParanoid:Q8IRL9 GenomeRNAi:31934 NextBio:776017
Uniprot:Q8IRL9
Length = 1100
Score = 125 (49.1 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 40/124 (32%), Positives = 66/124 (53%)
Query: 500 NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVM 559
N E +VM +L L K+ ++ IG+++PY AQV + +KL SK ++
Sbjct: 944 NYCEAGIVMHLLRYLLKSGYEASR---IGVIAPYRAQV-ELFKKLASKLDTD----LECN 995
Query: 560 SIDGFQGGEEDLIIISTVRSNNGGSIG---------FLSNSKRVNVALTRARHCLWILGN 610
++D FQG +++LII S S GG L + +R+ VA+TRA++ L +LG+
Sbjct: 996 TVDQFQGRDKNLIIYSC--SKTGGDFSDMERSREAEILEDQRRLTVAITRAKNKLILLGD 1053
Query: 611 ARTL 614
+ L
Sbjct: 1054 IKCL 1057
Score = 106 (42.4 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS 425
++ ++DEA Q+ + T+ L VL GD QLP +V SK + + +LF+RL
Sbjct: 766 DYCIVDEATQVLQP--TVLRPLIHCSKFVLVGDPEQLPPIVRSKEARQRGADETLFQRLD 823
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
+ +LS+QYRM+ +I+ N Y ++ +S
Sbjct: 824 S-EKATAVLSLQYRMNKTITRLANELTYGGDLKCAS 858
Score = 72 (30.4 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 19 TFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF 78
T G + LN Q A L L H LI G PGTGKT+T+ L+ +L +
Sbjct: 628 TKGAPILLNLNKVQQNAALRALTTS--SHL----LIKGLPGTGKTQTLVALVRLLHLLGK 681
Query: 79 RTLVCTPTNVAIKELAARVV 98
L+ T+ A+ L R++
Sbjct: 682 SVLITAQTHSAVDNLIMRLL 701
Score = 46 (21.3 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 115 FPLGDILLLGNNERLKVDSG----VEEIYLDYRVKR 146
F LG+ +++ + RL V +G +E LD R++R
Sbjct: 529 FDLGEYVVISSTSRLAVAAGFIVSIEARRLDLRLER 564
>UNIPROTKB|Q5ZKD7 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4
CTD:4343 EMBL:AJ720147 IPI:IPI00594294 RefSeq:NP_001012861.1
UniGene:Gga.1182 ProteinModelPortal:Q5ZKD7 STRING:Q5ZKD7
PRIDE:Q5ZKD7 GeneID:419872 KEGG:gga:419872 InParanoid:Q5ZKD7
NextBio:20822865 Uniprot:Q5ZKD7
Length = 967
Score = 165 (63.1 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 60/157 (38%), Positives = 82/157 (52%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYKAW-------IDSKEKLSIGIVS 531
P F V G E E S N E+ VV++ L L ++ I KE IGI+S
Sbjct: 772 PIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKE---IGIIS 828
Query: 532 PYSAQVVAIQEKLGSK-----YVNSAGFAVKVMSIDGFQGGEEDLIIISTVRS------- 579
PY QV I+ + SK + G +KV S++ FQG E +I+ISTVRS
Sbjct: 829 PYRKQVEKIRLAITSKDPVLRALPDIG-QLKVGSVEEFQGQERRVILISTVRSCSEYLQL 887
Query: 580 NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTR 616
+ +GFL N KR+NVALTRA+ L ++GNA L++
Sbjct: 888 DQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSK 924
Score = 152 (58.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 70/214 (32%), Positives = 101/214 (47%)
Query: 394 VLFGDECQLPAMVESKVSNEACFGRSLFERLS-----YL----GYSKHLLSI---QYRMH 441
VL GD QL + S ++ + G SL ERL Y GY+ ++ YR H
Sbjct: 671 VLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVTKLLWNYRSH 730
Query: 442 PSISCFPNSYFYENKIR--DSSTVRKRSYEKRFLHGPMYG-PYSFINVFGGRE-EFIEHS 497
+I PN FY+++++ + S R++ + P G P F V G E E S
Sbjct: 731 KAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEELPNRGVPIIFHGVCGEDEREAKSPS 790
Query: 498 CRNMVEVSVVMKILLNLYKAW-------IDSKEKLSIGIVSPYSAQVVAIQEKLGSK--- 547
N E+ VV++ L L ++ I KE IGI+SPY QV I+ + SK
Sbjct: 791 FFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKE---IGIISPYRKQVEKIRLAITSKDPV 847
Query: 548 --YVNSAGFAVKVMSIDGFQGGEEDLIIISTVRS 579
+ G +KV S++ FQG E +I+ISTVRS
Sbjct: 848 LRALPDIG-QLKVGSVEEFQGQERRVILISTVRS 880
Score = 87 (35.7 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT-VSMLLVILLQMK-FRTLVCTPT 86
N+ Q QAV + M + LI+GPPGTGKT T V + + K R L C P+
Sbjct: 492 NEEQCQAVKHIVTGMS---RPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPS 548
Query: 87 NVAIKELAARVV 98
N A L R++
Sbjct: 549 NSAADLLCQRLL 560
>RGD|1306223 [details] [associations]
symbol:Aqr "aquarius homolog (mouse)" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901 RGD:1306223
GO:GO:0005681 GO:GO:0000398 GO:GO:0097157 PANTHER:PTHR10887:SF5
IPI:IPI00389267 ProteinModelPortal:D3ZZP0
Ensembl:ENSRNOT00000011917 UCSC:RGD:1306223 ArrayExpress:D3ZZP0
Uniprot:D3ZZP0
Length = 1353
Score = 175 (66.7 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 83/319 (26%), Positives = 151/319 (47%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYML-HSVAMEPL 365
C ++K+ + E + L D K +K A + T + + + H +
Sbjct: 997 CFRHIKKIFTQLEEFRASELLRSGL--DRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGF 1054
Query: 366 NF--LVIDEAAQLKESESTIPLQL-------SGIKHAVLFGDECQLPAMVESKVSNE-AC 415
+ ++++EAAQ+ E E+ IPL L S +K ++ GD QLP ++++ + +
Sbjct: 1055 KYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSN 1114
Query: 416 FGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG 475
+SLF R +G L Q R S+ C ++ Y+N + + V+ G
Sbjct: 1115 MEQSLFTRFVRVGVPTVDLDAQGRARASL-CNLYNWRYKN-LGNLPHVQLLPEFSTANAG 1172
Query: 476 PMYGPYSFINV--F-G-GREEFIEHSCRNMVEVSVVMKILLNLYKAWID-SKEKLSIGIV 530
+Y + INV F G G E + +N+ E V + L +Y + +K+SI +
Sbjct: 1173 LLYD-FQLINVEDFQGVGESEPNPYFYQNLGEAEYV--VALFMYMCLLGYPADKISI--L 1227
Query: 531 SPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
+ Y+ Q I++ + + N+ G KV ++D FQG + D I++S VR+ ++G L
Sbjct: 1228 TTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHL 1284
Query: 589 SNSKRVNVALTRARHCLWI 607
+ +R+ VA++RAR L+I
Sbjct: 1285 RDVRRLVVAMSRARLGLYI 1303
Score = 80 (33.2 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 40 LRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF---RTLVCTPTNVAIKELAAR 96
+ +R + + ++ GPPGTGKT V++ ++ + F RTL+ T +N A+ +L +
Sbjct: 807 IEAIRAGMQPGLTMVVGPPGTGKTD-VAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEK 865
Query: 97 VVKL 100
++ L
Sbjct: 866 IMAL 869
>WB|WBGene00001258 [details] [associations]
symbol:emb-4 species:6239 "Caenorhabditis elegans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR024860 InterPro:IPR026300
PIRSF:PIRSF038901 GO:GO:0009792 GO:GO:0040010 GO:GO:0010171
GO:GO:0040011 GO:GO:0005681 GO:GO:0000398 eggNOG:COG1112
HOGENOM:HOG000170551 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467 EMBL:AL132853
GeneID:180232 KEGG:cel:CELE_Y80D3A.2 CTD:180232
RefSeq:NP_001256831.1 ProteinModelPortal:Q9U1Q7 SMR:Q9U1Q7
PaxDb:Q9U1Q7 PRIDE:Q9U1Q7 EnsemblMetazoa:Y80D3A.2a.1
EnsemblMetazoa:Y80D3A.2a.2 UCSC:Y80D3A.2.1 WormBase:Y80D3A.2a
InParanoid:Q9U1Q7 NextBio:908508 ArrayExpress:Q9U1Q7 Uniprot:Q9U1Q7
Length = 1467
Score = 180 (68.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 86/326 (26%), Positives = 152/326 (46%)
Query: 308 HFVLRKLQSSFNELNLPSAVEKDLLE---DLLKSFCLKRASLFLSTASSSYMLHSVAMEP 364
H R ++ F +L+ A E LL D + +K A + T + + + + ++
Sbjct: 997 HSCWRHIEQIFEKLDEFRAFE--LLRNGRDRTEYLLVKEAKIIAMTCTHAALRRNELVK- 1053
Query: 365 LNF----LVIDEAAQLKESESTIPLQLSG-------IKHAVLFGDECQLPAMVESKVSNE 413
L F +V++EAAQ+ E E+ IPL L +K ++ GD QLP +V+++ +
Sbjct: 1054 LGFRYDNIVMEEAAQILEVETFIPLLLQNPQDGHNRLKRWIMIGDHHQLPPVVQNQAFQK 1113
Query: 414 -ACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
+ +SLF RL L L Q R I+ + Y N + + V +
Sbjct: 1114 YSNMEQSLFARLVRLSVPNVQLDRQGRARAQIAEL-YQWRY-NGLGNLPHVDGLPQFQNA 1171
Query: 473 LHGPMYGPYSFINV--FGGREEF--IEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIG 528
G + P+ FI++ F G E H +N+ E + + + EK+SI
Sbjct: 1172 NAGFAF-PFQFIDIPDFNGHGETQPSPHFYQNLGEAEYACALYTYMRILGYPA-EKISI- 1228
Query: 529 IVSPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG 586
++ Y+ Q I++ + + G KV ++D +QG + D II+S V++ N IG
Sbjct: 1229 -LTTYNGQAQLIRDVFQRRCDTNPLIGMPAKVSTVDKYQGQQNDFIILSLVKTRN---IG 1284
Query: 587 FLSNSKRVNVALTRARHCLWILGNAR 612
+ + +R+ VAL+RAR L++LG ++
Sbjct: 1285 HIRDVRRLVVALSRARLGLYVLGRSK 1310
Score = 75 (31.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 51 IQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTNVAIKELAARVVKL 100
+ ++ GPPGTGKT ++ + RTL+ T +N A+ +L +++ L
Sbjct: 822 LTMVVGPPGTGKTDVAVQIISNIYHNWPNQRTLIVTHSNQALNQLFEKIIAL 873
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 308 HFVLRKLQSSFNELNLPSAVEKDLLEDLLKSF 339
HF LQ S E L S+ LL L+ +F
Sbjct: 121 HFFKSILQLSLQEEGLASSEHCALLTFLVNAF 152
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 17 NETFGPSLSSTLNDSQA-QAVLSCLRQMRCDHKATIQL-IWGPPGTGK-TKTVSMLLVIL 73
+E F L T+ D++ + + + M + ++ +W K +K +M +V++
Sbjct: 37 HENFDAKLIDTIYDNEMLKTSFNSRKIMMLEFSQYLEAYLWPNYVPEKASKAWNMSIVVM 96
Query: 74 LQMKFR 79
+ KFR
Sbjct: 97 INEKFR 102
>MGI|MGI:1276102 [details] [associations]
symbol:Aqr "aquarius" species:10090 "Mus musculus"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 MGI:MGI:1276102 GO:GO:0000398
CTD:9716 eggNOG:COG1112 HOGENOM:HOG000170551 HOVERGEN:HBG080430
KO:K12874 OMA:RTKAVGH OrthoDB:EOG4ZPDTF GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 EMBL:AK122310 EMBL:AK145547 EMBL:AK151716
EMBL:BC042479 EMBL:U90333 IPI:IPI00330263 RefSeq:NP_033832.2
UniGene:Mm.2545 ProteinModelPortal:Q8CFQ3 SMR:Q8CFQ3
PhosphoSite:Q8CFQ3 PaxDb:Q8CFQ3 PRIDE:Q8CFQ3
Ensembl:ENSMUST00000043160 GeneID:11834 KEGG:mmu:11834
GeneTree:ENSGT00700000104467 InParanoid:Q8CFQ3 NextBio:279759
Bgee:Q8CFQ3 CleanEx:MM_AQR Genevestigator:Q8CFQ3
GermOnline:ENSMUSG00000040383 Uniprot:Q8CFQ3
Length = 1481
Score = 175 (66.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 83/319 (26%), Positives = 151/319 (47%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYML-HSVAMEPL 365
C ++K+ + E + L D K +K A + T + + + H +
Sbjct: 1001 CFRHIKKIFTQLEEFRASELLRSGL--DRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGF 1058
Query: 366 NF--LVIDEAAQLKESESTIPLQL-------SGIKHAVLFGDECQLPAMVESKVSNE-AC 415
+ ++++EAAQ+ E E+ IPL L S +K ++ GD QLP ++++ + +
Sbjct: 1059 KYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSN 1118
Query: 416 FGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG 475
+SLF R +G L Q R S+ C ++ Y+N + + V+ G
Sbjct: 1119 MEQSLFTRFVRVGVPTVDLDAQGRARASL-CNLYNWRYKN-LGNLPHVQLLPEFSTANAG 1176
Query: 476 PMYGPYSFINV--F-G-GREEFIEHSCRNMVEVSVVMKILLNLYKAWID-SKEKLSIGIV 530
+Y + INV F G G E + +N+ E V + L +Y + +K+SI +
Sbjct: 1177 LLYD-FQLINVEDFQGVGESEPNPYFYQNLGEAEYV--VALFMYMCLLGYPADKISI--L 1231
Query: 531 SPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
+ Y+ Q I++ + + N+ G KV ++D FQG + D I++S VR+ ++G L
Sbjct: 1232 TTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHL 1288
Query: 589 SNSKRVNVALTRARHCLWI 607
+ +R+ VA++RAR L+I
Sbjct: 1289 RDVRRLVVAMSRARLGLYI 1307
Score = 80 (33.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 40 LRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF---RTLVCTPTNVAIKELAAR 96
+ +R + + ++ GPPGTGKT V++ ++ + F RTL+ T +N A+ +L +
Sbjct: 807 IEAIRAGMQPGLTMVVGPPGTGKTD-VAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEK 865
Query: 97 VVKL 100
++ L
Sbjct: 866 IMAL 869
>UNIPROTKB|O60306 [details] [associations]
symbol:AQR "Intron-binding protein aquarius" species:9606
"Homo sapiens" [GO:0097157 "pre-mRNA intronic binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] InterPro:IPR024860 InterPro:IPR026300
PIRSF:PIRSF038901 GO:GO:0000398 EMBL:AB011132 EMBL:EF553519
EMBL:BC036913 EMBL:BC070379 EMBL:BC108262 EMBL:BC127111
EMBL:BC127112 IPI:IPI00796835 PIR:T00333 RefSeq:NP_055506.1
UniGene:Hs.510958 ProteinModelPortal:O60306 SMR:O60306
IntAct:O60306 STRING:O60306 PhosphoSite:O60306 PaxDb:O60306
PRIDE:O60306 Ensembl:ENST00000156471 GeneID:9716 KEGG:hsa:9716
UCSC:uc001ziv.3 CTD:9716 GeneCards:GC15M035147 HGNC:HGNC:29513
MIM:610548 neXtProt:NX_O60306 PharmGKB:PA134869224 eggNOG:COG1112
HOGENOM:HOG000170551 HOVERGEN:HBG080430 InParanoid:O60306 KO:K12874
OMA:RTKAVGH OrthoDB:EOG4ZPDTF ChiTaRS:AQR GenomeRNAi:9716
NextBio:36525 Bgee:O60306 CleanEx:HS_AQR Genevestigator:O60306
GermOnline:ENSG00000021776 GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 Uniprot:O60306
Length = 1485
Score = 175 (66.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 83/319 (26%), Positives = 151/319 (47%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYML-HSVAMEPL 365
C ++K+ + E + L D K +K A + T + + + H +
Sbjct: 997 CFRHIKKIFTQLEEFRASELLRSGL--DRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGF 1054
Query: 366 NF--LVIDEAAQLKESESTIPLQL-------SGIKHAVLFGDECQLPAMVESKVSNE-AC 415
+ ++++EAAQ+ E E+ IPL L S +K ++ GD QLP ++++ + +
Sbjct: 1055 KYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSN 1114
Query: 416 FGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG 475
+SLF R +G L Q R S+ C ++ Y+N + + V+ G
Sbjct: 1115 MEQSLFTRFVRVGVPTVDLDAQGRARASL-CNLYNWRYKN-LGNLPHVQLLPEFSTANAG 1172
Query: 476 PMYGPYSFINV--F-G-GREEFIEHSCRNMVEVSVVMKILLNLYKAWID-SKEKLSIGIV 530
+Y + INV F G G E + +N+ E V + L +Y + +K+SI +
Sbjct: 1173 LLYD-FQLINVEDFQGVGESEPNPYFYQNLGEAEYV--VALFMYMCLLGYPADKISI--L 1227
Query: 531 SPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
+ Y+ Q I++ + + N+ G KV ++D FQG + D I++S VR+ ++G L
Sbjct: 1228 TTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHL 1284
Query: 589 SNSKRVNVALTRARHCLWI 607
+ +R+ VA++RAR L+I
Sbjct: 1285 RDVRRLVVAMSRARLGLYI 1303
Score = 80 (33.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 40 LRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF---RTLVCTPTNVAIKELAAR 96
+ +R + + ++ GPPGTGKT V++ ++ + F RTL+ T +N A+ +L +
Sbjct: 807 IEAIRAGMQPGLTMVVGPPGTGKTD-VAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEK 865
Query: 97 VVKL 100
++ L
Sbjct: 866 IMAL 869
>UNIPROTKB|F6QXW0 [details] [associations]
symbol:dna2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:8364 "Xenopus (Silurana)
tropicalis" [GO:0000076 "DNA replication checkpoint" evidence=ISS]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0004518 "nuclease activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0017108 "5'-flap endonuclease activity" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=ISS] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISS] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISS]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0000729 GO:GO:0017108 GO:GO:0000076
GO:GO:0043139 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 OMA:EHESLCH EMBL:AAMC01051984
EMBL:AAMC01051985 EMBL:AAMC01051986 Ensembl:ENSXETT00000016310
Uniprot:F6QXW0
Length = 1048
Score = 194 (73.4 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 75/256 (29%), Positives = 122/256 (47%)
Query: 395 LFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYE 454
L +C + + E SLF+RL + L++QYRM+ I N YE
Sbjct: 780 LIHHQCFKGCVKSVSLVRELGMSESLFKRLERNQEAVVQLTVQYRMNSQIMALSNKLVYE 839
Query: 455 NKI-----RDSSTVRKRSYEKRFL--------HGPMY--------GPYSFINVFGGREEF 493
++ R S+ V K + K L M+ P F+N +
Sbjct: 840 GRLECASDRVSNAVVKLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNT--EKIPA 897
Query: 494 IEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNS- 551
+E + + + K++ L K ++ + + S IGI++PY Q+ I S Y NS
Sbjct: 898 LETEEKGGISNWIEAKLVFCLTKLFLKAGCRPSDIGIIAPYRQQLKVI-----SNYFNSL 952
Query: 552 AGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGN 610
+ AV+V ++D +QG ++ +II+S VRSN G +G L + +R+NVALTRA+H L +LG
Sbjct: 953 SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGC 1012
Query: 611 ARTLTRKKSVWEALVH 626
TL+R + + + H
Sbjct: 1013 VPTLSRFLCLEQLICH 1028
Score = 56 (24.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK 77
LN Q QA+ L + D+ LI G PGTGKT T+ L V L +K
Sbjct: 627 LNKPQKQAMKRVL--LSKDYT----LIVGMPGTGKTTTICTL-VSTLHLK 669
>UNIPROTKB|I3LBB7 [details] [associations]
symbol:I3LBB7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] InterPro:IPR026851 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 EMBL:CU468421
Ensembl:ENSSSCT00000030264 OMA:STCHITH Uniprot:I3LBB7
Length = 249
Score = 124 (48.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 358 HSV-AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACF 416
H + + + +F ++DEA+Q+ + PL S + VL GD QLP +V ++ +
Sbjct: 5 HPIFSRKTFDFCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGM 62
Query: 417 GRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS 461
SLF+RL + L++QYRM+ I N YE K+ S
Sbjct: 63 SESLFKRLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGS 107
Score = 108 (43.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 31/108 (28%), Positives = 56/108 (51%)
Query: 480 PYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQV 537
P F+N E+ + N+ E +V+ + KA + +IGI++PY Q+
Sbjct: 148 PVCFLNTDKVPAPEQVEKGGVSNITEAKLVVYLTSIFVKAGCNP---CNIGIIAPYRQQL 204
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSI 585
I + L +S G V+V ++D +QG ++ +I++S VRSN G++
Sbjct: 205 KVINDLLSH---SSVGM-VEVNTVDKYQGRDKSIILVSFVRSNRDGTV 248
>CGD|CAL0002159 [details] [associations]
symbol:DNA2 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] InterPro:IPR026851 InterPro:IPR014808
CGD:CAL0002159 Pfam:PF08696 eggNOG:COG1112 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
InterPro:IPR022765 Pfam:PF01930 EMBL:AACQ01000161 EMBL:AACQ01000157
RefSeq:XP_712310.1 RefSeq:XP_712454.1 ProteinModelPortal:Q59RL2
STRING:Q59RL2 GeneID:3645932 GeneID:3646072 KEGG:cal:CaO19.1192
KEGG:cal:CaO19.8783 Uniprot:Q59RL2
Length = 1426
Score = 177 (67.4 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 80/276 (28%), Positives = 137/276 (49%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMV---ESKVSNEACFGRSLFE 422
++ ++DEA+Q+ S PL+ + K V+ GD QL +V + +V E RSLF
Sbjct: 1096 DYCIVDEASQITLPVSLGPLRFA--KKFVMVGDHDQLQPLVTHPDKRVKQE--LSRSLFS 1151
Query: 423 RLS--YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIR-DSSTVRKRSYE---KRFLH-- 474
L+ + HL + QYRM+ I N+ Y NK++ S V + S + L+
Sbjct: 1152 LLAKEHPDSVSHL-TYQYRMNSDIMNVCNTLIYNNKLKCGSEQVAQNSLKIPHPEVLNSF 1210
Query: 475 -GPMYGPYS-FIN-VFGGREE--FIEHSC-----RNMVEVSVVMK---ILLNLYKAWIDS 521
G P S +I+ +F + F+++ N+ E+ + K ++ + A +
Sbjct: 1211 IGEDVSPDSQWIHKIFDEKNNVLFLDYDAVPAVEENVGEMVINTKEALLIQQIVNALVHG 1270
Query: 522 KEKLS-IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSN 580
K IG++S Y AQ+ +++ L + +++++ D +QG +++ IIIS VRSN
Sbjct: 1271 GVKEDEIGVMSFYRAQLSVLKKNLNNLK------DLEILTADQYQGRDKECIIISLVRSN 1324
Query: 581 NGGSIGFLSNS-KRVNVALTRARHCLWILGNARTLT 615
G L +R+NVA TRA+ L ILG+ TL+
Sbjct: 1325 ERKFAGDLMKEYRRLNVATTRAKTKLIILGSRFTLS 1360
Score = 76 (31.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 53 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100
LI G PGTGKT ++ L+ +L+ + L+ + TN A+ + ++ L
Sbjct: 986 LIVGMPGTGKTTVIAQLIKVLVAQRKSVLLTSYTNSAVDNILLKLKDL 1033
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 166 DFLDNCVSLYHTYIDN--ESMKQSEDINGDIIKE 197
D +N Y Y + E + + ED+ G +KE
Sbjct: 739 DIFEN--DSYRKYFQHWDELISKEEDVMGRAVKE 770
>DICTYBASE|DDB_G0274777 [details] [associations]
symbol:DDB_G0274777 "DNA replication helicase"
species:44689 "Dictyostelium discoideum" [GO:0006261 "DNA-dependent
DNA replication" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR014808
dictyBase:DDB_G0274777 Pfam:PF08696 GO:GO:0005634 GO:GO:0006261
EMBL:AAFI02000012 GO:GO:0004003 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 KO:K10742 RefSeq:XP_643888.1
ProteinModelPortal:Q86IV6 EnsemblProtists:DDB0233088 GeneID:8619314
KEGG:ddi:DDB_G0274777 InParanoid:Q86IV6 Uniprot:Q86IV6
Length = 1838
Score = 119 (46.9 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 558 VMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTR 616
+++ID FQG ++D IIIS VRSN IG + + KR+NVA TRA+ L +G+ +L++
Sbjct: 1753 ILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSK 1812
Score = 112 (44.5 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 313 KLQSSFNELNLPS----AVEKDLLEDLLKSF-CLKRASLFLSTASSSYMLHSVAMEPLNF 367
++ SS N+++ PS +EK ++ +S L+R L ++T+ + ++
Sbjct: 1396 RVASSLNQID-PSLHRFTLEKQSFGNITQSKQYLERQQL-VATSCLGINHQCLLKMQFDY 1453
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
+IDEA+ L + S P+ L K VL GD QLP +V +K + + SLF++LS
Sbjct: 1454 CIIDEASILSQPISMGPI-LK-CKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTS 1511
Query: 428 GYSK-HLLSIQYRMHPSISCFPNSYFYENK-IRDSSTVRKRSYEKRFLH 474
S L QYRM SI N Y N+ + + ++ S + + H
Sbjct: 1512 HPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYH 1560
Score = 74 (31.1 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 10 MQSEGVWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSML 69
++ E W + LN Q A++ L D+ LI G PGTGKT V L
Sbjct: 1304 LEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAK--DYS----LIHGMPGTGKTTLVISL 1357
Query: 70 LVILLQMKFRTLVCTPTNVAIKELAARVVK 99
+ IL ++ + L+ + T+ ++ L + K
Sbjct: 1358 IHILWRLGKKVLITSFTHTSLDHLLLKFNK 1387
>RGD|1598327 [details] [associations]
symbol:Mov10 "Moloney leukemia virus 10" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IEA;ISO] InterPro:IPR003593 SMART:SM00382
RGD:1598327 GO:GO:0005524 GO:GO:0017111 GO:GO:0000932 GO:GO:0035279
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:CH474015 OrthoDB:EOG4SXNC4
CTD:4343 IPI:IPI00192859 RefSeq:NP_001101181.1 UniGene:Rn.3508
Ensembl:ENSRNOT00000018061 GeneID:310756 KEGG:rno:310756
UCSC:RGD:1598327 NextBio:662562 Uniprot:D3ZUC2
Length = 1004
Score = 161 (61.7 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 75/241 (31%), Positives = 110/241 (45%)
Query: 362 MEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLF 421
MEP + + I +KE+ + P G VL GD QL ++ S ++ + G SL
Sbjct: 652 MEPESLVAIAGLMDVKETGN--P---GG--QLVLAGDPRQLGPVLRSPLAQKHGLGYSLL 704
Query: 422 ERL-SYL--------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRSYE 469
ERL +Y GY ++ YR HP+I PN +Y+ +++ + V R
Sbjct: 705 ERLLTYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDRERF 764
Query: 470 KRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYK-AWIDSKEKLS 526
R+ P G P F V G E E S N E + V L L + K +LS
Sbjct: 765 CRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLRQLLAPSSKKGKARLS 824
Query: 527 ---IGIVSPYSAQVVAIQ---EKLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRS 579
+G++SPY QV I+ KL + +KV S++ FQG E +I+ISTVRS
Sbjct: 825 PRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRS 884
Query: 580 N 580
+
Sbjct: 885 S 885
Score = 148 (57.2 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 62/188 (32%), Positives = 86/188 (45%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYK-AWIDSKEKLS---IGIVSPYS 534
P F V G E E S N E + V L L + K +LS +G++SPY
Sbjct: 776 PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLRQLLAPSSKKGKARLSPRSVGVISPYR 835
Query: 535 AQVVAIQ---EKLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGG------- 583
QV I+ KL + +KV S++ FQG E +I+ISTVRS+
Sbjct: 836 KQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDF 895
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADDD 640
++GFL N KR NVA+TRA+ L ++GN L K+ E + C F A D
Sbjct: 896 NLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGYTGCPFPAKLD 955
Query: 641 KDLGKAIL 648
G+ +L
Sbjct: 956 LQQGQDLL 963
Score = 84 (34.6 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT-VSMLLVILLQM-KFRT 80
SL S N Q QA+ +R + +I+GPPGTGKT T V + ++ + K
Sbjct: 497 SLES--NPEQLQAMKHIVRGTT---RPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHI 551
Query: 81 LVCTPTNVAIKELAARVVKLVKESVER 107
L CTP+N L R+ + S+ R
Sbjct: 552 LACTPSNSGADLLCQRLRVHLPSSIYR 578
Score = 63 (27.2 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 341 LKRASLFLSTASSSYMLHSVA--MEPLNFLVIDEAAQLKESESTIPLQ-LSGIKHA---- 393
L++ + ++T ++ L S ++ + IDEA E ES + + L +K
Sbjct: 614 LQQYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPG 673
Query: 394 ---VLFGDECQLPAMVESKVSNEACFGRSLFERL 424
VL GD QL ++ S ++ + G SL ERL
Sbjct: 674 GQLVLAGDPRQLGPVLRSPLAQKHGLGYSLLERL 707
>UNIPROTKB|F1SBP9 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035279 "mRNA cleavage involved in gene silencing by
miRNA" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] GO:GO:0000932 GO:GO:0035279 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
OMA:VRFFKLD EMBL:CU861480 RefSeq:XP_003481536.1 UniGene:Ssc.19573
Ensembl:ENSSSCT00000007422 GeneID:100521086 KEGG:ssc:100521086
Uniprot:F1SBP9
Length = 1001
Score = 169 (64.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 75/242 (30%), Positives = 113/242 (46%)
Query: 361 AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL 420
+MEP + + I ++KE+++ P G VL GD QL ++ ++ + G SL
Sbjct: 650 SMEPESLVAIAGLLEVKEADN--P---GG--QLVLAGDPRQLGPVLRCPLTQKHGLGYSL 702
Query: 421 FERL-SYL--------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRSY 468
ERL +Y GY+ ++ YR HP+I PN +YE +++ + V R
Sbjct: 703 LERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRER 762
Query: 469 EKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYKAWIDS-KEKL 525
R+ P G P F V G E E S N E + V L L + K +L
Sbjct: 763 FCRWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLTSSSKKGKARL 822
Query: 526 S---IGIVSPYSAQVVAIQE---KLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVR 578
S +G++SPY QV I+ KL + +KV S++ FQG E +I+ISTVR
Sbjct: 823 SPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVR 882
Query: 579 SN 580
S+
Sbjct: 883 SS 884
Score = 153 (58.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 62/189 (32%), Positives = 87/189 (46%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYKAWIDS-KEKLS---IGIVSPYS 534
P F V G E E S N E + V L L + K +LS +G++SPY
Sbjct: 775 PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYR 834
Query: 535 AQVVAIQE---KLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGG------- 583
QV I+ KL + +KV S++ FQG E +I+ISTVRS+
Sbjct: 835 KQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDF 894
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH----DANARQCFFNADD 639
++GFL N KR NVA+TRA+ L ++GN L W+A + + C F A
Sbjct: 895 NLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKAFLEFCKENGGYTGCPFPAKL 953
Query: 640 DKDLGKAIL 648
D G+ +L
Sbjct: 954 DLQQGQNLL 962
Score = 78 (32.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 53 LIWGPPGTGKTKT-VSMLLVILLQM-KFRTLVCTPTNVAIKELAARVVKLVKESVERDCR 110
+I+GPPGTGKT T V + ++ + K L C P+N L R+ + S+ R
Sbjct: 521 IIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYR--- 577
Query: 111 DALFFPLGDILLL 123
L P DI L+
Sbjct: 578 --LLAPSRDIRLV 588
>UNIPROTKB|F1NPB8 [details] [associations]
symbol:AQR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0000398 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 EMBL:AADN02003289 EMBL:AADN02003288
IPI:IPI00597734 Ensembl:ENSGALT00000015995 Uniprot:F1NPB8
Length = 1416
Score = 167 (63.8 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 82/320 (25%), Positives = 148/320 (46%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLN 366
C L+K+ + E + L D K +K A + T + + + +E L
Sbjct: 1006 CFRHLKKIFTQLEEFRAFELLRSGL--DRSKYLLVKEAKIIAMTCTHAALKRHDLVE-LG 1062
Query: 367 F----LVIDEAAQLKESESTIPLQL-------SGIKHAVLFGDECQLPAMVESKVSNE-A 414
F ++++E+AQ+ E E+ IPL L S +K ++ GD QLP ++++ + +
Sbjct: 1063 FKYDNILMEESAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYS 1122
Query: 415 CFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLH 474
+SLF R +G L Q R S+ C ++ Y+N + + V+ +
Sbjct: 1123 NMEQSLFTRFVRVGVPTVDLDAQGRARASL-CNLYNWRYKN-LGNLPHVQLMPEFRTANA 1180
Query: 475 GPMYGPYSFINV--FGG--REEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIV 530
G +Y + INV F G E + +N+ E V+ + + Y + I I+
Sbjct: 1181 GFLYD-FQLINVEDFNGVGESEPNPYFYQNLGEAEYVVAVFM--YMCLLGYPAD-RISIL 1236
Query: 531 SPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
+ Y+ Q I++ + + N+ G KV ++D FQG + D I++S VR+ ++G L
Sbjct: 1237 TTYNGQKHLIRDVINQRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTK---AVGHL 1293
Query: 589 SNS-KRVNVALTRARHCLWI 607
+R+ VA++RAR L+I
Sbjct: 1294 RRDVRRLVVAMSRARLGLYI 1313
Score = 82 (33.9 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 40 LRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF---RTLVCTPTNVAIKELAAR 96
+ +R + + ++ GPPGTGKT V++ ++ L F RTL+ T +N A+ +L +
Sbjct: 816 IEAIRAGMQPGLTMVVGPPGTGKTD-VAVQIISNLYHNFPEQRTLIVTHSNQALNQLFEK 874
Query: 97 VVKL 100
++ L
Sbjct: 875 IMAL 878
>UNIPROTKB|F1MUW2 [details] [associations]
symbol:F1MUW2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0000398 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 EMBL:DAAA02028420 EMBL:DAAA02028416
EMBL:DAAA02028417 EMBL:DAAA02028418 EMBL:DAAA02028419
IPI:IPI00852511 Ensembl:ENSBTAT00000016895 Uniprot:F1MUW2
Length = 1466
Score = 169 (64.5 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 82/319 (25%), Positives = 151/319 (47%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYML-HSVAMEPL 365
C ++K+ + E + L D K +K A + T + + + H +
Sbjct: 979 CFRHIKKIFTQLEEFRASELLRSGL--DRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGF 1036
Query: 366 NF--LVIDEAAQLKESESTIPLQL-------SGIKHAVLFGDECQLPAMVESKVSNE-AC 415
+ ++++EAAQ+ E E+ IPL L S +K ++ GD QLP ++++ + +
Sbjct: 1037 KYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSN 1096
Query: 416 FGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG 475
+SLF R +G L Q R S+ C ++ Y+N + + V+ G
Sbjct: 1097 MEQSLFTRFVRVGVPTVDLDAQGRARASL-CNLYNWRYKN-LGNLPHVQLLLEFSTANAG 1154
Query: 476 PMYGPYSFINV--F-G-GREEFIEHSCRNMVEVSVVMKILLNLYKAWID-SKEKLSIGIV 530
+Y + INV F G G E + +N+ E V + L +Y + +K+SI +
Sbjct: 1155 LLYD-FQLINVEDFQGVGESEPNPYFYQNLGEAEYV--VALFMYMCLLGYPADKISI--L 1209
Query: 531 SPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
+ Y+ Q I++ + + ++ G KV ++D FQG + D I++S VR+ ++G L
Sbjct: 1210 TTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHL 1266
Query: 589 SNSKRVNVALTRARHCLWI 607
+ +R+ VA++RAR L+I
Sbjct: 1267 RDVRRLVVAMSRARLGLYI 1285
Score = 80 (33.2 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 40 LRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF---RTLVCTPTNVAIKELAAR 96
+ +R + + ++ GPPGTGKT V++ ++ + F RTL+ T +N A+ +L +
Sbjct: 790 IEAIRAGMQPGLTMVVGPPGTGKTD-VAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEK 848
Query: 97 VVKL 100
++ L
Sbjct: 849 IMAL 852
>UNIPROTKB|Q9HCE1 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0007219 "Notch signaling pathway" evidence=TAS] GO:GO:0005829
GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006355 GO:GO:0007219 GO:GO:0006351
GO:GO:0003723 GO:GO:0004386 GO:GO:0000932 GO:GO:0035279
eggNOG:COG1112 InterPro:IPR026122 PANTHER:PTHR10887:SF17
EMBL:AL603832 HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 CTD:4343
OMA:VRFFKLD EMBL:AB046851 EMBL:AK074174 EMBL:AL833353 EMBL:BC002548
EMBL:BC004499 EMBL:BC009312 IPI:IPI00444452 IPI:IPI00444454
IPI:IPI00929442 RefSeq:NP_001123551.1 RefSeq:NP_066014.1
UniGene:Hs.514941 ProteinModelPortal:Q9HCE1 SMR:Q9HCE1
DIP:DIP-44158N IntAct:Q9HCE1 STRING:Q9HCE1 PhosphoSite:Q9HCE1
DMDM:24638063 PaxDb:Q9HCE1 PRIDE:Q9HCE1 DNASU:4343
Ensembl:ENST00000357443 Ensembl:ENST00000369645
Ensembl:ENST00000413052 Ensembl:ENST00000544796 GeneID:4343
KEGG:hsa:4343 UCSC:uc001eck.3 GeneCards:GC01P113215 HGNC:HGNC:7200
MIM:610742 neXtProt:NX_Q9HCE1 PharmGKB:PA30908 HOVERGEN:HBG052500
InParanoid:Q9HCE1 PhylomeDB:Q9HCE1 ChiTaRS:MOV10 GenomeRNAi:4343
NextBio:17098 ArrayExpress:Q9HCE1 Bgee:Q9HCE1 CleanEx:HS_MOV10
Genevestigator:Q9HCE1 GermOnline:ENSG00000155363 Uniprot:Q9HCE1
Length = 1003
Score = 168 (64.2 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 77/241 (31%), Positives = 111/241 (46%)
Query: 362 MEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLF 421
MEP + + I ++KE+ P G VL GD QL ++ S ++ + G SL
Sbjct: 651 MEPESLVAIAGLMEVKETGD--P---GG--QLVLAGDPRQLGPVLRSPLTQKHGLGYSLL 703
Query: 422 ERL-SYL--------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRSYE 469
ERL +Y GY ++ YR HP+I PN +YE +++ + V R
Sbjct: 704 ERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERF 763
Query: 470 KRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL-LNLYKAWIDSKEKLS 526
R+ P G P F V G E E S N E + V L L L + K +LS
Sbjct: 764 CRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLS 823
Query: 527 ---IGIVSPYSAQVVAIQ---EKLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRS 579
+G++SPY QV I+ KL + +KV S++ FQG E +I+ISTVRS
Sbjct: 824 PRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRS 883
Query: 580 N 580
+
Sbjct: 884 S 884
Score = 149 (57.5 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 63/189 (33%), Positives = 87/189 (46%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL-LNLYKAWIDSKEKLS---IGIVSPYS 534
P F V G E E S N E + V L L L + K +LS +G++SPY
Sbjct: 775 PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYR 834
Query: 535 AQVVAIQ---EKLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGG------- 583
QV I+ KL + +KV S++ FQG E +I+ISTVRS+
Sbjct: 835 KQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDF 894
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH----DANARQCFFNADD 639
++GFL N KR NVA+TRA+ L I+GN L W+ + + C F A
Sbjct: 895 NLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPD-WKVFLEFCKENGGYTGCPFPAKL 953
Query: 640 DKDLGKAIL 648
D G+ +L
Sbjct: 954 DLQQGQNLL 962
Score = 77 (32.2 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 53 LIWGPPGTGKTKT-VSMLLVILLQM-KFRTLVCTPTNVAIKELAARVVKLVKESVER 107
+I+GPPGTGKT T V + ++ + K L C P+N L R+ + S+ R
Sbjct: 521 IIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYR 577
Score = 61 (26.5 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 368 LVIDEAAQLKESESTIPLQ-LSGIKHA-------VLFGDECQLPAMVESKVSNEACFGRS 419
+ IDEA E ES + + L +K VL GD QL ++ S ++ + G S
Sbjct: 642 IFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYS 701
Query: 420 LFERL 424
L ERL
Sbjct: 702 LLERL 706
>MGI|MGI:97054 [details] [associations]
symbol:Mov10 "Moloney leukemia virus 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISO] InterPro:IPR003593 SMART:SM00382
MGI:MGI:97054 GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
HOVERGEN:HBG052500 EMBL:X52574 EMBL:AK004542 EMBL:BC053743
EMBL:X75819 IPI:IPI00130328 PIR:A39611 RefSeq:NP_001156912.1
RefSeq:NP_001156913.1 RefSeq:NP_032645.2 UniGene:Mm.1597
ProteinModelPortal:P23249 SMR:P23249 DIP:DIP-48575N STRING:P23249
PhosphoSite:P23249 PaxDb:P23249 PRIDE:P23249
Ensembl:ENSMUST00000168015 GeneID:17454 KEGG:mmu:17454
NextBio:292100 Bgee:P23249 Genevestigator:P23249
GermOnline:ENSMUSG00000002227 Uniprot:P23249
Length = 1004
Score = 158 (60.7 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 75/241 (31%), Positives = 110/241 (45%)
Query: 362 MEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLF 421
MEP + + I +KE+ + P G VL GD QL ++ S ++ + G SL
Sbjct: 652 MEPESLVAIAGLMDVKETGN--P---GG--QLVLAGDPRQLGPVLRSPLALKHGLGYSLL 704
Query: 422 ERL-SYL--------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRSYE 469
ERL +Y GY ++ YR HP+I PN +Y+ +++ + V R
Sbjct: 705 ERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDRERF 764
Query: 470 KRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYK-AWIDSKEKLS 526
R+ P G P F V G E E S N E + V L L + K +LS
Sbjct: 765 CRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLS 824
Query: 527 ---IGIVSPYSAQVVAIQ---EKLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRS 579
+G++SPY QV I+ KL + +KV S++ FQG E +I+ISTVRS
Sbjct: 825 PRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRS 884
Query: 580 N 580
+
Sbjct: 885 S 885
Score = 148 (57.2 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 62/188 (32%), Positives = 86/188 (45%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYK-AWIDSKEKLS---IGIVSPYS 534
P F V G E E S N E + V L L + K +LS +G++SPY
Sbjct: 776 PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYR 835
Query: 535 AQVVAIQ---EKLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGG------- 583
QV I+ KL + +KV S++ FQG E +I+ISTVRS+
Sbjct: 836 KQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDF 895
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTLTRK---KSVWEALVHDANARQCFFNADDD 640
++GFL N KR NVA+TRA+ L ++GN L K+ E + C F A D
Sbjct: 896 NLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGYTGCPFPAKLD 955
Query: 641 KDLGKAIL 648
G+ +L
Sbjct: 956 LQQGQDLL 963
Score = 79 (32.9 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT-VSMLLVILLQM-KFRT 80
SL S N Q QA+ +R + +I+GPPGTGKT T V + ++ + K
Sbjct: 497 SLES--NPEQLQAMKHIVRGTT---RPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHI 551
Query: 81 LVCTPTNVAIKELAARVVKLVKESVER 107
L C P+N L R+ + S+ R
Sbjct: 552 LACAPSNSGADLLCQRLRVHLPSSIYR 578
Score = 61 (26.5 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 28/100 (28%), Positives = 47/100 (47%)
Query: 341 LKRASLFLSTASSSYMLHSVA--MEPLNFLVIDEAAQLKESESTIPLQ-LSGIKHA---- 393
L++ + ++T ++ L S ++ + IDEA E ES + + L +K
Sbjct: 614 LQQYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPG 673
Query: 394 ---VLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYS 430
VL GD QL ++ S ++ + G SL ERL L Y+
Sbjct: 674 GQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERL--LAYN 711
>UNIPROTKB|P51530 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0005524
"ATP binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0042645
"mitochondrial nucleoid" evidence=IDA] [GO:0043504 "mitochondrial
DNA repair" evidence=IDA] [GO:0006264 "mitochondrial DNA
replication" evidence=IDA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA] [GO:0045740 "positive regulation of DNA
replication" evidence=IDA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IDA] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0005760
"gamma DNA polymerase complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000076 "DNA replication checkpoint"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IDA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000729 "DNA double-strand
break processing" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0032201 "telomere
maintenance via semi-conservative replication" evidence=TAS]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0032508 "DNA
duplex unwinding" evidence=IDA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0051539 GO:GO:0042645 GO:GO:0000084 GO:GO:0016890
eggNOG:COG1112 GO:GO:0045740 GO:GO:0000722 GO:GO:0000729
GO:GO:0017108 Reactome:REACT_383 GO:GO:0000076 GO:GO:0043137
GO:GO:0043139 GO:GO:0043142 GO:GO:0043504 GO:GO:0006264
PANTHER:PTHR10887:SF14 CTD:1763 HOGENOM:HOG000168456
HOVERGEN:HBG081456 KO:K10742 EMBL:D42046 EMBL:AL136233
EMBL:BC041115 EMBL:BC053574 EMBL:BC063664 EMBL:BC111740
EMBL:BC028188 IPI:IPI00216142 IPI:IPI00816670 IPI:IPI00816801
PIR:T50697 RefSeq:NP_001073918.2 UniGene:Hs.532446
ProteinModelPortal:P51530 SMR:P51530 STRING:P51530
PhosphoSite:P51530 DMDM:119370373 PaxDb:P51530 PRIDE:P51530
Ensembl:ENST00000358410 Ensembl:ENST00000399179
Ensembl:ENST00000549829 GeneID:1763 KEGG:hsa:1763 UCSC:uc021prt.1
GeneCards:GC10M070173 HGNC:HGNC:2939 HPA:HPA037487 MIM:601810
neXtProt:NX_P51530 InParanoid:P51530 GenomeRNAi:1763 NextBio:7187
ArrayExpress:P51530 Bgee:P51530 CleanEx:HS_DNA2
Genevestigator:P51530 GermOnline:ENSG00000138346 GO:GO:0032201
Uniprot:P51530
Length = 1060
Score = 160 (61.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 46/156 (29%), Positives = 83/156 (53%)
Query: 480 PYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQV 537
P F+N E+ + N+ E +++ + KA + IGI++PY Q+
Sbjct: 891 PVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSD---IGIIAPYRQQL 947
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNV 596
I + L S G V+V ++D +QG ++ ++++S VRSN G++G L + +R+NV
Sbjct: 948 KIINDLLA----RSIGM-VEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 1002
Query: 597 ALTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
A+TRA+H L +LG +L + E L++ N+ +
Sbjct: 1003 AITRAKHKLILLGCVPSLNCYPPL-EKLLNHLNSEK 1037
Score = 151 (58.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 70/290 (24%), Positives = 128/290 (44%)
Query: 326 AVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM---EPL------NFLVIDEAAQL 376
A+++ +++ +S +K +L +S ++ + M P+ +F ++DEA+Q+
Sbjct: 708 AIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQI 767
Query: 377 KESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSI 436
+ PL S + VL GD QLP +V ++ + SLF+RL + L++
Sbjct: 768 SQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTV 825
Query: 437 QYRMHPSISCFPNSYFYENKIRDSS------TVRKRSYEKRFLHGPMYGPYS----FINV 486
QYRM+ I N YE K+ S + R ++ L Y YS + V
Sbjct: 826 QYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGV 885
Query: 487 FGGREE--FIEHS---CRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAI- 540
F F+ VE V + ++ S + G SP ++A
Sbjct: 886 FEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIF-VKAGC-SPSDIGIIAPY 943
Query: 541 --QEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
Q K+ + + + V+V ++D +QG ++ ++++S VRSN G++G L
Sbjct: 944 RQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGEL 993
Score = 80 (33.2 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 626 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTH 679
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 680 SAVDNILLKLAK 691
Score = 48 (22.0 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSS 354
+R L+ + LNL K +ED L SFC K A F+ +S+
Sbjct: 190 IRHLKEMYR-LNLSQDEIKQEVEDYLPSFC-KWAGDFMHKNTST 231
>UNIPROTKB|J3KPX5 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 EMBL:AL136233
HGNC:HGNC:2939 OMA:EHESLCH ProteinModelPortal:J3KPX5
Ensembl:ENST00000399180 Uniprot:J3KPX5
Length = 1146
Score = 160 (61.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 46/156 (29%), Positives = 83/156 (53%)
Query: 480 PYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQV 537
P F+N E+ + N+ E +++ + KA + IGI++PY Q+
Sbjct: 977 PVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSD---IGIIAPYRQQL 1033
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNV 596
I + L S G V+V ++D +QG ++ ++++S VRSN G++G L + +R+NV
Sbjct: 1034 KIINDLLA----RSIGM-VEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 1088
Query: 597 ALTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
A+TRA+H L +LG +L + E L++ N+ +
Sbjct: 1089 AITRAKHKLILLGCVPSLNCYPPL-EKLLNHLNSEK 1123
Score = 151 (58.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 70/290 (24%), Positives = 128/290 (44%)
Query: 326 AVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM---EPL------NFLVIDEAAQL 376
A+++ +++ +S +K +L +S ++ + M P+ +F ++DEA+Q+
Sbjct: 794 AIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQI 853
Query: 377 KESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSI 436
+ PL S + VL GD QLP +V ++ + SLF+RL + L++
Sbjct: 854 SQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTV 911
Query: 437 QYRMHPSISCFPNSYFYENKIRDSS------TVRKRSYEKRFLHGPMYGPYS----FINV 486
QYRM+ I N YE K+ S + R ++ L Y YS + V
Sbjct: 912 QYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGV 971
Query: 487 FGGREE--FIEHS---CRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAI- 540
F F+ VE V + ++ S + G SP ++A
Sbjct: 972 FEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIF-VKAGC-SPSDIGIIAPY 1029
Query: 541 --QEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
Q K+ + + + V+V ++D +QG ++ ++++S VRSN G++G L
Sbjct: 1030 RQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGEL 1079
Score = 80 (33.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 712 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTH 765
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 766 SAVDNILLKLAK 777
Score = 48 (22.0 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSS 354
+R L+ + LNL K +ED L SFC K A F+ +S+
Sbjct: 276 IRHLKEMYR-LNLSQDEIKQEVEDYLPSFC-KWAGDFMHKNTST 317
>UNIPROTKB|Q0V8H6 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391
HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 EMBL:BT026242 EMBL:BC148151
IPI:IPI00691419 RefSeq:NP_001069307.1 UniGene:Bt.2939
ProteinModelPortal:Q0V8H6 STRING:Q0V8H6 Ensembl:ENSBTAT00000018997
GeneID:523206 KEGG:bta:523206 CTD:4343 InParanoid:Q0V8H6
OMA:VRFFKLD NextBio:20873687 Uniprot:Q0V8H6
Length = 1003
Score = 156 (60.0 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 73/242 (30%), Positives = 110/242 (45%)
Query: 361 AMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSL 420
AMEP + + I ++KE+++ P G VL GD QL ++ ++ + G SL
Sbjct: 650 AMEPESLVAIAGLMEVKEADN--P---GG--QLVLAGDPRQLGPVLRCPLTQKHGLGYSL 702
Query: 421 FERLSYL---------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRSY 468
ERL GY+ ++ YR HP+I PN +Y+ +++ + V R
Sbjct: 703 LERLLTFNALYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDRER 762
Query: 469 EKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYK-AWIDSKEKL 525
R+ P P F V G E E S N E + V L L + K +L
Sbjct: 763 FCRWEGLPRQDFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARL 822
Query: 526 S---IGIVSPYSAQVVAIQ---EKLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVR 578
S +G++SPY QV I+ KL + +KV S++ FQG E +I+ISTVR
Sbjct: 823 SPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVR 882
Query: 579 SN 580
S+
Sbjct: 883 SS 884
Score = 147 (56.8 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 61/189 (32%), Positives = 86/189 (45%)
Query: 480 PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLYK-AWIDSKEKLS---IGIVSPYS 534
P F V G E E S N E + V L L + K +LS +G++SPY
Sbjct: 775 PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYR 834
Query: 535 AQVVAIQ---EKLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRSNNGG------- 583
QV I+ KL + +KV S++ FQG E +I+ISTVRS+
Sbjct: 835 KQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDF 894
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH----DANARQCFFNADD 639
++GFL N KR NVA+TRA+ L ++GN L W+ + + C F A
Sbjct: 895 NLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKVFLEFCKENGGYTGCPFPAKL 953
Query: 640 DKDLGKAIL 648
D G+ +L
Sbjct: 954 DLQQGQNLL 962
Score = 77 (32.2 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 53 LIWGPPGTGKTKT-VSMLLVILLQM-KFRTLVCTPTNVAIKELAARVVKLVKESVER 107
+I+GPPGTGKT T V + ++ + K L C P+N L R+ + S+ R
Sbjct: 521 IIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYR 577
Score = 60 (26.2 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 368 LVIDEAAQLKESESTIPLQ-LSGIKHA-------VLFGDECQLPAMVESKVSNEACFGRS 419
+ IDEA E ES + + L +K A VL GD QL ++ ++ + G S
Sbjct: 642 IFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYS 701
Query: 420 LFERL 424
L ERL
Sbjct: 702 LLERL 706
>FB|FBgn0036451 [details] [associations]
symbol:CG9425 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR003593
InterPro:IPR007087 InterPro:IPR011990 InterPro:IPR015880
Pfam:PF00642 PROSITE:PS00028 SMART:SM00355 SMART:SM00382
GO:GO:0005524 EMBL:AE014296 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:1.25.40.10 GO:GO:0017111 eggNOG:COG1112
GeneTree:ENSGT00550000074391 RefSeq:NP_996084.1 UniGene:Dm.11708
ProteinModelPortal:Q7KUL0 SMR:Q7KUL0 STRING:Q7KUL0 PaxDb:Q7KUL0
PRIDE:Q7KUL0 EnsemblMetazoa:FBtr0075693 EnsemblMetazoa:FBtr0333074
EnsemblMetazoa:FBtr0333075 GeneID:39613 KEGG:dme:Dmel_CG9425
UCSC:CG9425-RB FlyBase:FBgn0036451 InParanoid:Q7KUL0 OMA:WINELSG
OrthoDB:EOG46HDRH PhylomeDB:Q7KUL0 ChiTaRS:CG9425 GenomeRNAi:39613
NextBio:814517 ArrayExpress:Q7KUL0 Bgee:Q7KUL0 Uniprot:Q7KUL0
Length = 2103
Score = 163 (62.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 80/294 (27%), Positives = 122/294 (41%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIK-HAVLFGDECQLPAMVESKVSNEACFGRSLFERLSY 426
+ +DEAAQ E E+ +PL L+ VL GD Q+ + S + E SL ERL Y
Sbjct: 954 IFLDEAAQAMECEAIMPLALANDSTRIVLAGDHMQMSPELFSAFAKERKLHISLLERL-Y 1012
Query: 427 LGYS-----KHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPY 481
Y K LL YR H +I F + FYE K+ S K+ RF +
Sbjct: 1013 DHYPSNFPCKILLCENYRAHEAIIRFTSELFYEQKLVASG---KQPRHDRFYPLTFFTTR 1069
Query: 482 SFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQ 541
+V ++ V V ++ AW SIGI++PYS QV I+
Sbjct: 1070 GE-DVQDKNSTAFYNNAEVYEVVERVSELRKRWPSAW-GKLNDTSIGIMTPYSDQVFRIR 1127
Query: 542 EKL-----GS----KYVNSAGFAVKVMSIDGF--------QGGEEDLIIISTVRSNNGGS 584
+L G + +N G + + + QG +++ +
Sbjct: 1128 SELRKRRMGGISVERVLNVQGKQFRAVFLSTVRTRRTCMPQGSAPGSASTTSI-GDADAD 1186
Query: 585 IGFLSNSKRVNVALTRARHCLWILGNARTLT---RKKSVWEALVHDANARQCFF 635
GFLSNSK +N A+TRA+ + ++G+ L R + VWE + + + F
Sbjct: 1187 YGFLSNSKLLNTAITRAQSLVAVVGDPVALCSIGRCRKVWERFIEICDEHKSLF 1240
Score = 73 (30.8 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTL 81
S LN Q +AV + + K L+ GP GTGKT T++ + LL Q + + L
Sbjct: 801 SCEPKLNAKQREAVNAITTALSI--KLPPILLIGPFGTGKTYTLAQAIKQLLTQPEAKIL 858
Query: 82 VCTPTNVA 89
+CT +N A
Sbjct: 859 ICTHSNSA 866
>WB|WBGene00001016 [details] [associations]
symbol:dna-2 species:6239 "Caenorhabditis elegans"
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA;IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IDA] [GO:0006259 "DNA
metabolic process" evidence=IDA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005634 GO:GO:0009792
eggNOG:COG1112 GO:GO:0017108 GO:GO:0000014 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
GeneTree:ENSGT00550000074852 OMA:EHESLCH GO:GO:0043141 EMBL:Z50070
PIR:T22132 RefSeq:NP_496515.1 ProteinModelPortal:Q20371 SMR:Q20371
STRING:Q20371 PaxDb:Q20371 PRIDE:Q20371 EnsemblMetazoa:F43G6.1a
GeneID:174809 KEGG:cel:CELE_F43G6.1 UCSC:F43G6.1a CTD:174809
WormBase:F43G6.1a HOGENOM:HOG000016745 InParanoid:Q20371
NextBio:885596 ArrayExpress:Q20371 Uniprot:Q20371
Length = 1105
Score = 155 (59.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 77/265 (29%), Positives = 123/265 (46%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL--S 425
+++DEA+ + E +P+ + K VL GD QL +V S+ + + G S E+L S
Sbjct: 823 VIVDEASMVLEP-LLLPVLATSNKF-VLVGDCKQLTPLVVSRKAKQEGAGISTMEKLQQS 880
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENK-IRDSSTVRKRSYEKR------------F 472
+ G L S QYRM+ IS + FYEN+ I + +V + S ++
Sbjct: 881 HPGVVVSLTS-QYRMNREISVLSSKLFYENRLICGNESVSRSSLDRTGDYIVAMDDGSDH 939
Query: 473 LHGPMYGPYSFINVFGGREEFIEHS--CRNMVEVSVV----MKILLNLYKAWIDSKEKL- 525
+ + G VF + I C + + K++ L + ++ S K
Sbjct: 940 IRKALSGDIKDSCVFLDTQSTINSKMQCEDGEGGGMCNDGEAKLISELCQQFVMSGVKPH 999
Query: 526 SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSI 585
IG++S Y QV I+ L S ++V +ID +QG E+ +II S +NN
Sbjct: 1000 EIGVMSAYRRQVDHIRGILNSD-------ELEVNTIDSYQGREKRVIIWSLTWTNNSTKK 1052
Query: 586 G-FLSNSKRVNVALTRARHCLWILG 609
L + +RVNVALTRAR L ++G
Sbjct: 1053 SELLKDERRVNVALTRARQKLVVVG 1077
Score = 74 (31.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83
+ + LN+ Q +AV+ L ++ G PG+GKT +S+L+ L+ + L+
Sbjct: 682 IKAKLNNEQRKAVVHALAT------EDFMMVEGLPGSGKTTLISVLIQCLVATNKKVLLA 735
Query: 84 TPTNVAIKELAARVVKLV 101
T+ A+ + ++ K V
Sbjct: 736 AFTHSAVDNILTKLTKEV 753
Score = 41 (19.5 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 115 FPLGDILLLGNNERLKVDSG-VEEIYLDYRVKRLA 148
F GD+ LL N + + + ++E+ D ++ +++
Sbjct: 575 FRPGDVCLLSNKKHIAIGFALIDEVSDDQQIVKIS 609
>UNIPROTKB|Q886X0 [details] [associations]
symbol:PSPTO_1455 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG1112
InterPro:IPR024402 Pfam:PF10881 RefSeq:NP_791281.1
ProteinModelPortal:Q886X0 GeneID:1183092 KEGG:pst:PSPTO_1455
PATRIC:19994154 HOGENOM:HOG000273296 OMA:HYRCHPK
ProtClustDB:CLSK879830 BioCyc:PSYR223283:GJIX-1482-MONOMER
Uniprot:Q886X0
Length = 758
Score = 102 (41.0 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 44/134 (32%), Positives = 69/134 (51%)
Query: 336 LKSFCLKRASLFLSTASSSYMLHSVAMEP-LNFLVIDEAAQLKESESTIP--LQLSGIKH 392
L +F LKR + S+ S +++S+ + L++++IDEA+Q + +P L LS K+
Sbjct: 306 LDAF-LKRYPVIGSSTHS--IVNSLGGKAVLDYVIIDEASQ----QDIVPGVLALSCAKN 358
Query: 393 AVLFGDECQLPAMVESKVSNEA------CFGRSLFER-LSYLGYS--KHLLSIQYRMHPS 443
++ GD QL A + K+ EA C SL + + G S LL YR HP
Sbjct: 359 LIIVGDRKQL-AHIPEKLGLEAPAPWYDCETYSLLDSCVGVFGDSIPMTLLKEHYRCHPR 417
Query: 444 ISCFPNSYFYENKI 457
I F N FY+N++
Sbjct: 418 IIQFCNQQFYDNQL 431
Score = 92 (37.4 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLV-ILLQMKFRTLVCTPT 86
LN+SQ +AV + I LI GPPGTGKT+T+ ++ ILLQ K V +
Sbjct: 30 LNESQLKAVEQAF-------SSQISLIEGPPGTGKTQTILNIIANILLQGK-TVAVVSNN 81
Query: 87 NVAIKELAARVVK 99
N A+K + ++ K
Sbjct: 82 NAAVKNVYEKLGK 94
Score = 76 (31.8 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 528 GIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTV--RSNNGGSI 585
G ++P+ Q L + ++N ++ FQG E D I+ STV + + +
Sbjct: 485 GFIAPFKNQATLSGSCLPADFIND--------TVHKFQGRECDEIVFSTVLDKHKSPERL 536
Query: 586 GFLSNSKRVNVALTRARH 603
F+ +++ VNVA++RA++
Sbjct: 537 SFVDDARMVNVAVSRAKN 554
>UNIPROTKB|G4MK85 [details] [associations]
symbol:MGG_02491 "DNA replication ATP-dependent helicase
dna2" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0004386 EMBL:CM001231 GO:GO:0017108 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742 InterPro:IPR022765
Pfam:PF01930 RefSeq:XP_003709288.1 ProteinModelPortal:G4MK85
EnsemblFungi:MGG_02491T0 GeneID:2681588 KEGG:mgr:MGG_02491
Uniprot:G4MK85
Length = 1689
Score = 159 (61.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 42/127 (33%), Positives = 75/127 (59%)
Query: 490 REEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKL-GSKY 548
REE + N VE +V++++ +L + + E IG+++ Y +Q+ ++ KL K
Sbjct: 1445 REEAKGNRIVNPVEAQLVVQLVESLMTLGVPANE---IGVMTHYRSQLALLKHKLLRGKN 1501
Query: 549 VNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWI 607
A AV++ + D FQG +++++++S VRSN IG L + +R+NVA TRA+ L +
Sbjct: 1502 TGDAT-AVEMHTADRFQGRDKEVVVLSLVRSNEACHIGDLLRDWRRINVAFTRAKTKLLV 1560
Query: 608 LGNARTL 614
+G+ TL
Sbjct: 1561 IGSRETL 1567
Score = 67 (28.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 53 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESV 105
L+ G PGTGKT T++ ++ L++ L+ + T+ A+ + ++KL +S+
Sbjct: 1169 LVLGMPGTGKTTTIAHIIRALIRQGKSVLLTSYTHSAVDNI---LLKLKGDSI 1218
>UNIPROTKB|H0Y455 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 GO:GO:0017108 GO:GO:0043142 GO:GO:0033567
PANTHER:PTHR10887:SF14 EMBL:AL136233 HGNC:HGNC:2939
ProteinModelPortal:H0Y455 PRIDE:H0Y455 Ensembl:ENST00000440722
Bgee:H0Y455 Uniprot:H0Y455
Length = 375
Score = 160 (61.4 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 46/156 (29%), Positives = 83/156 (53%)
Query: 480 PYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQV 537
P F+N E+ + N+ E +++ + KA + IGI++PY Q+
Sbjct: 213 PVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSD---IGIIAPYRQQL 269
Query: 538 VAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNV 596
I + L S G V+V ++D +QG ++ ++++S VRSN G++G L + +R+NV
Sbjct: 270 KIINDLLA----RSIGM-VEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 324
Query: 597 ALTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
A+TRA+H L +LG +L + E L++ N+ +
Sbjct: 325 AITRAKHKLILLGCVPSLNCYPPL-EKLLNHLNSEK 359
Score = 151 (58.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 70/290 (24%), Positives = 128/290 (44%)
Query: 326 AVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM---EPL------NFLVIDEAAQL 376
A+++ +++ +S +K +L +S ++ + M P+ +F ++DEA+Q+
Sbjct: 30 AIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQI 89
Query: 377 KESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSI 436
+ PL S + VL GD QLP +V ++ + SLF+RL + L++
Sbjct: 90 SQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTV 147
Query: 437 QYRMHPSISCFPNSYFYENKIRDSS------TVRKRSYEKRFLHGPMYGPYS----FINV 486
QYRM+ I N YE K+ S + R ++ L Y YS + V
Sbjct: 148 QYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGV 207
Query: 487 FGGREE--FIEHS---CRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAI- 540
F F+ VE V + ++ S + G SP ++A
Sbjct: 208 FEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIF-VKAGC-SPSDIGIIAPY 265
Query: 541 --QEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
Q K+ + + + V+V ++D +QG ++ ++++S VRSN G++G L
Sbjct: 266 RQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGEL 315
>UNIPROTKB|F8VR31 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 EMBL:AL136233
HGNC:HGNC:2939 IPI:IPI01022599 ProteinModelPortal:F8VR31
Ensembl:ENST00000551118 UCSC:uc001jog.2 ArrayExpress:F8VR31
Bgee:F8VR31 Uniprot:F8VR31
Length = 807
Score = 157 (60.3 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 42/134 (31%), Positives = 76/134 (56%)
Query: 500 NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVM 559
N+ E +++ + KA + IGI++PY Q+ I + L S G V+V
Sbjct: 675 NVTEAKLIVFLTSIFVKAGCSPSD---IGIIAPYRQQLKIINDLLA----RSIGM-VEVN 726
Query: 560 SIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTRKK 618
++D +QG ++ ++++S VRSN G++G L + +R+NVA+TRA+H L +LG +L
Sbjct: 727 TVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYP 786
Query: 619 SVWEALVHDANARQ 632
+ E L++ N+ +
Sbjct: 787 PL-EKLLNHLNSEK 799
Score = 55 (24.4 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLL 70
LN Q QA+ L + D+ LI G PGTGKT T+ L+
Sbjct: 626 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLV 662
Score = 48 (22.0 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSS 354
+R L+ + LNL K +ED L SFC K A F+ +S+
Sbjct: 190 IRHLKEMYR-LNLSQDEIKQEVEDYLPSFC-KWAGDFMHKNTST 231
>WB|WBGene00019529 [details] [associations]
symbol:K08D10.5 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] eggNOG:COG1112
EMBL:FO081596 GeneTree:ENSGT00530000065249 PIR:T29386
RefSeq:NP_500503.1 UniGene:Cel.27256 ProteinModelPortal:Q21321
SMR:Q21321 PaxDb:Q21321 EnsemblMetazoa:K08D10.5 GeneID:187150
KEGG:cel:CELE_K08D10.5 UCSC:K08D10.5 CTD:187150 WormBase:K08D10.5
InParanoid:Q21321 OMA:KEINIFR NextBio:934280 Uniprot:Q21321
Length = 602
Score = 158 (60.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 66/258 (25%), Positives = 109/258 (42%)
Query: 370 IDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNE---ACFGRSLFERLSY 426
IDEA+QL L +L GD QLP E + E A G L +
Sbjct: 320 IDEASQLALYVLGSLATLLPKTRIILVGDMHQLPPYTEDALPAELKRAAVGEPLTLAVKG 379
Query: 427 LGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINV 486
+S L+ +R I+ + FY N + + R + P + P+ F+N
Sbjct: 380 RRWSSMHLTRVHRCPKMITDLLGAVFYGNTLTSTRKAVNRVPILEAMELPSHHPFVFVNY 439
Query: 487 FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGS 546
+ + + S N E ++++ L + + +S+ +++ Y AQ
Sbjct: 440 ISQQTQ-VGKSFSNENEARYALQLVTALKRHAREQNTTVSVAVLNFYGAQY--------- 489
Query: 547 KYVNS-AGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCL 605
YV S A V+V +IDG QG E D+ I+ RS+ FL N R+NVAL+R++
Sbjct: 490 SYVYSIAEDGVRVNTIDGCQGQEYDVSIVLLTRSDPYEKSKFLVNPNRINVALSRSKMAT 549
Query: 606 WILGNARTLTRKKSVWEA 623
++G + +V +A
Sbjct: 550 VVIGQRHLIGNHPNVQQA 567
>UNIPROTKB|F1SRZ7 [details] [associations]
symbol:F1SRZ7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR024860
GO:GO:0005681 GO:GO:0000398 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467 EMBL:CU633172
Ensembl:ENSSSCT00000005301 Uniprot:F1SRZ7
Length = 1206
Score = 142 (55.0 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 73/300 (24%), Positives = 137/300 (45%)
Query: 307 CHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYML-HSVAMEPL 365
C ++K+ + E + L D K +K A + T + + + H +
Sbjct: 914 CFRHIKKIFTQLEEFRASELLRSGL--DRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGF 971
Query: 366 NF--LVIDEAAQLKESESTIPLQL-------SGIKHAVLFGDECQLPAMVESKVSNE-AC 415
+ ++++EAAQ+ E E+ IPL L S +K ++ GD QLP ++++ + +
Sbjct: 972 KYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSN 1031
Query: 416 FGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG 475
+SLF R +G L Q R S+ C ++ Y+N + + V+ G
Sbjct: 1032 MEQSLFTRFVRVGVPTVDLDAQGRARASL-CNLYNWRYKN-LGNLPHVQLLPEFSTANAG 1089
Query: 476 PMYGPYSFINV--F-G-GREEFIEHSCRNMVEVSVVMKILLNLYKAWID-SKEKLSIGIV 530
+Y + INV F G G E + +N+ E V + L +Y + +K+SI +
Sbjct: 1090 LLYD-FQLINVEDFQGVGESEPNPYFYQNLGEAEYV--VALFMYMCLLGYPADKISI--L 1144
Query: 531 SPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFL 588
+ Y+ Q I++ + + ++ G KV ++D FQG + D I++S VR+ G + ++
Sbjct: 1145 TTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRAVGHLRYV 1204
Score = 68 (29.0 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 56 GPPGTGKTKTVSMLLVILLQMKF---RTLVCTPTNVAIKELAARVVKL 100
GPPGTGKT V++ ++ + F RT + T +N A+ +L +++ L
Sbjct: 740 GPPGTGKTD-VAVPIISNIYRNFPEQRTRIVTRSNHALNQLFEKIMAL 786
>SGD|S000001207 [details] [associations]
symbol:DNA2 "Tripartite DNA replication factor" species:4932
"Saccharomyces cerevisiae" [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000784
"nuclear chromosome, telomeric region" evidence=IDA] [GO:0000723
"telomere maintenance" evidence=IMP] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006273 "lagging strand
elongation" evidence=IGI;IMP] [GO:0006281 "DNA repair"
evidence=IEA;IGI;IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0043142 "single-stranded
DNA-dependent ATPase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0000706 "meiotic DNA double-strand break processing"
evidence=IGI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR026851
SGD:S000001207 InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 EMBL:BK006934
GO:GO:0001302 GO:GO:0051539 GO:GO:0004003 eggNOG:COG1112
GO:GO:0000784 EMBL:U00027 GO:GO:0000723 GO:GO:0000706 GO:GO:0000733
GO:GO:0017108 GO:GO:0000014 GO:GO:0043139 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
GeneTree:ENSGT00550000074852 OrthoDB:EOG47H8Z4 PIR:S48904
RefSeq:NP_012034.1 ProteinModelPortal:P38859 SMR:P38859
DIP:DIP-2324N IntAct:P38859 MINT:MINT-620090 STRING:P38859
EnsemblFungi:YHR164C GeneID:856569 KEGG:sce:YHR164C CYGD:YHR164c
HOGENOM:HOG000112234 OMA:GLARYNI NextBio:982411
Genevestigator:P38859 GermOnline:YHR164C GO:GO:0035861
GO:GO:0006273 Uniprot:P38859
Length = 1522
Score = 129 (50.5 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 35/91 (38%), Positives = 58/91 (63%)
Query: 527 IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSN---NGG 583
IG+++ Y AQ+ + +K+ +K V +++++ D FQG ++ IIIS VR N NGG
Sbjct: 1361 IGVMTLYRAQL-RLLKKIFNKNVYDG---LEILTADQFQGRDKKCIIISMVRRNSQLNGG 1416
Query: 584 SIGFLSNSKRVNVALTRARHCLWILGNARTL 614
++ L +RVNVA+TRA+ L I+G+ T+
Sbjct: 1417 AL--LKELRRVNVAMTRAKSKLIIIGSKSTI 1445
Score = 106 (42.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 56/244 (22%), Positives = 112/244 (45%)
Query: 356 MLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEAC 415
+L ++ + +++++DEA+Q+ + PL+ ++ GD QLP +V++ +
Sbjct: 1171 ILFTLNEKDFDYVILDEASQISMPVALGPLRYGN--RFIMVGDHYQLPPLVKNDAARLGG 1228
Query: 416 FGRSLFERLSYLG-YSKHLLSIQYRMHPSISCFPNSYFYENKIR-DSSTVRKRSYE---- 469
SLF+ S L++QYRM I N Y+NK++ ++ V +S E
Sbjct: 1229 LEESLFKTFCEKHPESVAELTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMP 1288
Query: 470 ---KRFLHGPMYGPYSFINVFGGREE--FIEH-SCRNMVEVSVVMKILLNLYKAWIDSK- 522
R+ + ++ + F+ + +C +++E S I N +A + +
Sbjct: 1289 EALSRYRNESANSKQWLEDILEPTRKVVFLNYDNCPDIIEQSEKDNIT-NHGEAELTLQC 1347
Query: 523 -EKLSIGIVSPYSAQVVAI---QEKLGSKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTV 577
E + + V V+ + Q +L K N + +++++ D FQG ++ IIIS V
Sbjct: 1348 VEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNKNVYDGLEILTADQFQGRDKKCIIISMV 1407
Query: 578 RSNN 581
R N+
Sbjct: 1408 RRNS 1411
Score = 80 (33.2 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLV 82
S +TLN +Q +A+ + MR + A LI G PGTGKT ++ ++ IL+ R L+
Sbjct: 1047 SKDTTLNLNQKEAID---KVMRAEDYA---LILGMPGTGKTTVIAEIIKILVSEGKRVLL 1100
Query: 83 CTPTNVAIKELAARV 97
+ T+ A+ + ++
Sbjct: 1101 TSYTHSAVDNILIKL 1115
>ZFIN|ZDB-GENE-050508-3 [details] [associations]
symbol:zgc:113057 "zgc:113057" species:7955 "Danio
rerio" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR026855 ZFIN:ZDB-GENE-050508-3
GO:GO:0004386 eggNOG:COG1112 PANTHER:PTHR10887:SF16 IPI:IPI00492493
EMBL:BC094297 RefSeq:NP_001018332.1 UniGene:Dr.115608
ProteinModelPortal:Q52KK8 GeneID:552926 KEGG:dre:552926
HOGENOM:HOG000007768 InParanoid:Q52KK8 NextBio:20879878
Uniprot:Q52KK8
Length = 231
Score = 135 (52.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 47/137 (34%), Positives = 71/137 (51%)
Query: 527 IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN----- 581
I I++PY+AQV I+ L K V + V V ++ QG E +I+STVRS +
Sbjct: 75 IAILTPYNAQVSEIKMTLEKKNVRN----VTVCTVMKSQGSEWPYVIVSTVRSCSTSDIQ 130
Query: 582 -----------GGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANA 630
G +GF++++ +VNVA+TRA+ L ILGN+ L R +W+ L+
Sbjct: 131 AYRVRPHKAWLGKRLGFVTDANQVNVAITRAQDGLCILGNS-DLLRCCELWDRLLDHYYR 189
Query: 631 RQCFFN-ADDDKDLGKA 646
+ C N A D + KA
Sbjct: 190 KSCVVNPASDIRVKAKA 206
>UNIPROTKB|Q8EA89 [details] [associations]
symbol:SO_4019 "P-loop containing nucleoside triphosphate
hydrolase superfamily" species:211586 "Shewanella oneidensis MR-1"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001261 PROSITE:PS00758 GO:GO:0006508
GO:GO:0008237 EMBL:AE014299 GenomeReviews:AE014299_GR
RefSeq:NP_719549.1 ProteinModelPortal:Q8EA89 GeneID:1171647
KEGG:son:SO_4019 PATRIC:23527708 HOGENOM:HOG000221837 OMA:HRPCTSS
ProtClustDB:CLSK907456 Uniprot:Q8EA89
Length = 907
Score = 125 (49.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 73/324 (22%), Positives = 140/324 (43%)
Query: 299 LLHKRRSECHFV--LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYM 356
L HKR + F LR QS+ L + D D LK + ++LS+ +S +
Sbjct: 465 LKHKRSTLVSFASALRARQSA---KQLDGFYKTDF--DALK----QTFPIWLSSLASLHK 515
Query: 357 LHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL------PAMVESKV 410
+ + + + ++IDEA Q + + +P L K A++ GD QL ++++
Sbjct: 516 VLPMEQQMFDLVIIDEATQANIA-ACLPA-LQRAKAALVVGDSKQLRHFSFLSRAKQTQI 573
Query: 411 SNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENK--IRDSSTVRKRSY 468
+ +SY S L Q S F N +F I+ S+ +
Sbjct: 574 QTQLGLAPDCRGLMSYRDASMLDLVSQSLASQSQVVFLNEHFRSKPELIQFSNQQFYQGM 633
Query: 469 EKRFLHGPMY--GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS 526
K H P G ++V G R+ N +E +++ L L ++ S
Sbjct: 634 LKIMQHRPCTSSGHLHRVHVTGSRDS----KGINAIEAEALIQKLSQLIDEQENALVPSS 689
Query: 527 IGIVSPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIIS-TVRSNNGG 583
IG++S + Q + +++ +++ +++ + GFQG E D++++S ++ +N+
Sbjct: 690 IGVLSCFRNQAEYLSQQILARFSAQQLERHQLRIATPFGFQGEERDIMLLSFSITANDSR 749
Query: 584 SIGFLSNSKRVNVALTRARHCLWI 607
+ +L+ NVA+TRA+ W+
Sbjct: 750 AAVYLNREDMFNVAITRAKQMQWL 773
Score = 67 (28.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83
L L+ +Q QA+ ++ +H T+ I GPPGTGK+ T++ + + L+
Sbjct: 255 LPGLLSRAQIQAL-----KVAANH--TLGQISGPPGTGKSYTIATVAAEQVLRGKSVLIV 307
Query: 84 TPTNVAIKELAARV 97
T+VA+ +A ++
Sbjct: 308 AHTDVAVDVIADKL 321
>TIGR_CMR|SO_4019 [details] [associations]
symbol:SO_4019 "hypothetical protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001261
PROSITE:PS00758 GO:GO:0006508 GO:GO:0008237 EMBL:AE014299
GenomeReviews:AE014299_GR RefSeq:NP_719549.1
ProteinModelPortal:Q8EA89 GeneID:1171647 KEGG:son:SO_4019
PATRIC:23527708 HOGENOM:HOG000221837 OMA:HRPCTSS
ProtClustDB:CLSK907456 Uniprot:Q8EA89
Length = 907
Score = 125 (49.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 73/324 (22%), Positives = 140/324 (43%)
Query: 299 LLHKRRSECHFV--LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYM 356
L HKR + F LR QS+ L + D D LK + ++LS+ +S +
Sbjct: 465 LKHKRSTLVSFASALRARQSA---KQLDGFYKTDF--DALK----QTFPIWLSSLASLHK 515
Query: 357 LHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL------PAMVESKV 410
+ + + + ++IDEA Q + + +P L K A++ GD QL ++++
Sbjct: 516 VLPMEQQMFDLVIIDEATQANIA-ACLPA-LQRAKAALVVGDSKQLRHFSFLSRAKQTQI 573
Query: 411 SNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENK--IRDSSTVRKRSY 468
+ +SY S L Q S F N +F I+ S+ +
Sbjct: 574 QTQLGLAPDCRGLMSYRDASMLDLVSQSLASQSQVVFLNEHFRSKPELIQFSNQQFYQGM 633
Query: 469 EKRFLHGPMY--GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS 526
K H P G ++V G R+ N +E +++ L L ++ S
Sbjct: 634 LKIMQHRPCTSSGHLHRVHVTGSRDS----KGINAIEAEALIQKLSQLIDEQENALVPSS 689
Query: 527 IGIVSPYSAQVVAIQEKLGSKYVNSA--GFAVKVMSIDGFQGGEEDLIIIS-TVRSNNGG 583
IG++S + Q + +++ +++ +++ + GFQG E D++++S ++ +N+
Sbjct: 690 IGVLSCFRNQAEYLSQQILARFSAQQLERHQLRIATPFGFQGEERDIMLLSFSITANDSR 749
Query: 584 SIGFLSNSKRVNVALTRARHCLWI 607
+ +L+ NVA+TRA+ W+
Sbjct: 750 AAVYLNREDMFNVAITRAKQMQWL 773
Score = 67 (28.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83
L L+ +Q QA+ ++ +H T+ I GPPGTGK+ T++ + + L+
Sbjct: 255 LPGLLSRAQIQAL-----KVAANH--TLGQISGPPGTGKSYTIATVAAEQVLRGKSVLIV 307
Query: 84 TPTNVAIKELAARV 97
T+VA+ +A ++
Sbjct: 308 AHTDVAVDVIADKL 321
>UNIPROTKB|I3L717 [details] [associations]
symbol:LOC100514320 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000212 InterPro:IPR014016
Pfam:PF00580 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
PANTHER:PTHR11070 GeneTree:ENSGT00620000088104 EMBL:CU856332
Ensembl:ENSSSCT00000031166 OMA:STHEECA Uniprot:I3L717
Length = 827
Score = 103 (41.3 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 41/168 (24%), Positives = 75/168 (44%)
Query: 748 YFQVLKVWDILPLEDVPKVVARLDNIYVKYTAEFINHCKEKSIEGNL--EVPKTWTATSN 805
Y +++++WDI+ D K+ + I Y ++ K ++G+ +V
Sbjct: 104 YTEIIRIWDIVLDHD--KLKDSIRAICGAYNRG-LSCILRKKLKGDHKGQVSANMKIQKR 160
Query: 806 VVRFKNLADNDNNSGSDLSGAAFDSRNYAENSNVSESLSLMKFYRXXXXXXXXXXXDRVG 865
+ R + D + +D SGA + + S V ++MKF+ D
Sbjct: 161 IPRCY-VEDTE----ADQSGAYMEPEYFPPASAVETEYNIMKFHSFSTSMASNILNDTT- 214
Query: 866 RELDLPFEVTDEQLEMI-LSPRST---FILGRSGTGKTTVLTRKLFQK 909
++ PF V + + +I L+PR ++GRSGTGKTT +L++K
Sbjct: 215 TTVEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKK 262
Score = 74 (31.1 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 949 LRQLFVTVSPKLCFAIKQHISQMKSSAFGGKFVAESSLIDIDDEAEFKDIPNSFADIPAE 1008
L Q+FVT + LC ++++ +++ S A S ++ + D+ E
Sbjct: 361 LHQIFVTKNHVLCQEVQRNFTELSKST-----KATSHYKSLEPSV------HRLQDLKDE 409
Query: 1009 SYPLVITFHKFLMMLDGTLGSSYFDRFHD 1037
++PL +T + L++LD +L +F R D
Sbjct: 410 NFPLFVTSKQLLLLLDASLPEPFFLRNED 438
Score = 57 (25.1 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 673 WKVNFSENFLKSFR-KLTSDPTKKSVIHLLLKLSNG-W-RPKKRNVDSVCGS 721
W++ + LK K+ + KK +I + KL NG W R ++ + ++ GS
Sbjct: 3 WEIECTSEILKKLSSKVMTKVMKKKIILTIQKLGNGEWTRDLRKRLKNLKGS 54
>WB|WBGene00010989 [details] [associations]
symbol:R03D7.2 species:6239 "Caenorhabditis elegans"
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
GO:GO:0006974 EMBL:Z46828 PIR:T23869 RefSeq:NP_496354.1
ProteinModelPortal:Q09594 SMR:Q09594 EnsemblMetazoa:R03D7.2
GeneID:174682 KEGG:cel:CELE_R03D7.2 UCSC:R03D7.2 CTD:174682
WormBase:R03D7.2 eggNOG:KOG1801 GeneTree:ENSGT00530000065249
InParanoid:Q09594 NextBio:885046 Uniprot:Q09594
Length = 542
Score = 134 (52.2 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 69/251 (27%), Positives = 106/251 (42%)
Query: 370 IDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNE---ACFGRSLFERLSY 426
IDEA+QL + +L GD QLP +E + E A G L +
Sbjct: 221 IDEASQLALYVLGSLATMLPKSRMILVGDMHQLPPYMEEALPAELKRAAIGEPLTLAVKG 280
Query: 427 LGY-SKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFIN 485
+ S HL + +R I+ FY N + S + + P P F+N
Sbjct: 281 RRWPSMHLTRV-HRCPKMITEVLGDLFYGNTLTSSKPGVTDIPVLKAMGLPSRHPMVFVN 339
Query: 486 VFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLG 545
+ + + S N E ++++ L + + +K++ I++ Y AQ
Sbjct: 340 -YTSPQTAVGKSFSNEGEARYALQLVEALTRYASTANKKITAAILNFYGAQY-------- 390
Query: 546 SKYVNS-AGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHC 604
YV S A V V +IDG QG E D+ I+ RS+ FL N+ R+NVAL+R +
Sbjct: 391 -SYVYSMAEDEVTVNTIDGCQGQEYDVTIVLLTRSDPYERSKFLVNANRINVALSRPKIA 449
Query: 605 LWILGNARTLT 615
I+G R LT
Sbjct: 450 TVIIGQ-RHLT 459
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1044 993 0.00099 122 3 11 22 0.36 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 173
No. of states in DFA: 626 (67 KB)
Total size of DFA: 465 KB (2219 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 79.18u 0.14s 79.32t Elapsed: 00:00:04
Total cpu time: 79.23u 0.15s 79.38t Elapsed: 00:00:04
Start: Sat May 11 14:10:32 2013 End: Sat May 11 14:10:36 2013
WARNINGS ISSUED: 1