BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041971
(1044 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 170/309 (55%), Gaps = 13/309 (4%)
Query: 334 DLLKSFCLKRASLFLSTAS-SSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKH 392
D +++ L+ A++ +T S S L + + + ++IDEAAQ E + IPL + K
Sbjct: 452 DSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLA-TRCKQ 510
Query: 393 AVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYF 452
L GD QLPA V S V+ ++ +G S+FERL GY +L QYRMHP I FP+ F
Sbjct: 511 VFLVGDPKQLPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPSKQF 570
Query: 453 YENKIRDSSTVRKRSYEKRFLHG-PMYGPYSFINVFGGREEFIEH-----SCRNMVEVSV 506
YE + D S + ++ R H +GP+ F ++ G+E +H S N+ EV
Sbjct: 571 YEGALEDGSDIEAQT--TRDWHKYRCFGPFCFFDIHEGKES--QHPGATGSRVNLDEVEF 626
Query: 507 VMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQG 566
V+ I L + + K + I+SPY+ QV +++ + A V + ++DGFQG
Sbjct: 627 VLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQG 686
Query: 567 GEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
E+D+ I S VR+N G IGFLSNS+R+NV +TRA+ + ++G+A TL + +W+ L+
Sbjct: 687 REKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATL-KSDPLWKNLIE 745
Query: 627 DANARQCFF 635
A R F
Sbjct: 746 SAEQRNRLF 754
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 164/275 (59%), Gaps = 16/275 (5%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDEA Q E S IPL+ G K ++ GD QLP V S ++ + +SLF R+
Sbjct: 1587 VIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEK- 1644
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS---TVRKRSYEKRFLHGPMYGPYSFI 484
S +LL +QYRMHPSIS FP+S FY+ +++D + KR + + P+ PY F
Sbjct: 1645 NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQL---EPL-APYKFF 1700
Query: 485 NVFGGREE--FIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS--IGIVSPYSAQVVAI 540
++ GR+E S NM E+ V ++++ L++ + D+K + IGI+SPY Q+ +
Sbjct: 1701 DIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKF-DNKIDFTGKIGIISPYREQMQKM 1759
Query: 541 QEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNG-GSIGFLSNSKRVNVALT 599
+++ + ++ +IDGFQG E+++I+IS VR+++ S+GFL + +R+NVALT
Sbjct: 1760 RKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALT 1819
Query: 600 RARHCLWILGNARTLTRKKSVWEALVHDANARQCF 634
RA+ +W+LG+ R+L + K +W L+ DA R C
Sbjct: 1820 RAKTSIWVLGHQRSLAKSK-LWRDLIEDAKDRSCL 1853
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 31/98 (31%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF------ 78
S LN SQA+A+++ + K LI GPPGTGKTKT+ ++ L K
Sbjct: 1332 SYKLNTSQAEAIVNSV------SKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNV 1385
Query: 79 -------------------RTLVCTPTNVAIKELAARV 97
+ L+C P+N A+ E+ R+
Sbjct: 1386 IKVPLEKNSSNTEQLLKKQKILICAPSNAAVDEICLRL 1423
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 177/311 (56%), Gaps = 19/311 (6%)
Query: 330 DLLEDLLKSFCLKRASLFLSTASSS-YMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLS 388
D+L+ +++ L+ A + +T S+S + L A ++IDEAAQ E S IPL+
Sbjct: 1474 DVLKKQIQNQLLQEADIVCATLSASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKY- 1532
Query: 389 GIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPS 443
G + V+ GD QLP V SK S + + +SL+ R+ + +H LLSIQYRM+P
Sbjct: 1533 GCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRM----FKQHNESACLLSIQYRMNPE 1588
Query: 444 ISCFPNSYFYENKIRDS---STVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRN 500
IS FP+ +FY +K+ D S V R + + P G Y F NV G S N
Sbjct: 1589 ISRFPSKFFYNSKLLDGPNMSAVTSRPWHE----DPQLGIYRFFNVHGTEAFSNSKSLYN 1644
Query: 501 MVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMS 560
+ E S ++ + L + +++ + IG+V+PY +QV ++ + KY + + + +
Sbjct: 1645 VEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHT 1704
Query: 561 IDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSV 620
+DGFQG E+D+II S VRS+ G IGFL + +R+NVALTRA+ L+I+GN++ L ++ +
Sbjct: 1705 VDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLM-QEDI 1763
Query: 621 WEALVHDANAR 631
+ +L+ DA R
Sbjct: 1764 FYSLIEDAKTR 1774
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 17/62 (27%)
Query: 53 LIWGPPGTGKTKTV-SMLLVIL------LQM----------KFRTLVCTPTNVAIKELAA 95
LI GPPGTGKTKT+ M+ +L LQ K + L+C P+N AI E+
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSNAAIDEILL 1349
Query: 96 RV 97
R+
Sbjct: 1350 RI 1351
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 181/339 (53%), Gaps = 24/339 (7%)
Query: 312 RKLQSSFNELNLPSAV-------------EKDLLEDLLKSFCLKRASLFLSTASSSYMLH 358
++LQ+ NE NL E DLL + LK+A + +T S S H
Sbjct: 1305 KELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSG--H 1362
Query: 359 S-VAMEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEAC 415
VA LNF ++IDEAAQ E ++ IPL+ G K +L GD QLP V SK +
Sbjct: 1363 DLVAHSSLNFSTVIIDEAAQAVELDTIIPLRY-GAKKCILVGDPNQLPPTVLSKKAASLN 1421
Query: 416 FGRSLFERLSYLGYSKH--LLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFL 473
+ +SLF R+ +S LLSIQYRMHP IS FP+ FY++++ D + +++ ++ +
Sbjct: 1422 YSQSLFVRIQK-NFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKT-QQVWH 1479
Query: 474 HGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPY 533
P + Y +V G S N+ EV ++ ++ L + D IG+++PY
Sbjct: 1480 VNPKFTQYRLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPY 1539
Query: 534 SAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKR 593
+Q+ ++ KY S + + ++DGFQG E+D+I S V+S + IGFL + +R
Sbjct: 1540 RSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRR 1599
Query: 594 VNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
+NVALTRAR L I+GN TL + +W +LV DA +R+
Sbjct: 1600 LNVALTRARSSLLIIGNMETL-KTDDLWGSLVDDALSRK 1637
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 35/138 (25%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT----VSMLLVIL---------- 73
+N+ QA+A++ L D+ LI GPPGTGKTKT +S LLV L
Sbjct: 1130 VNEPQAKAIMCAL-----DNNG-FTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQ 1183
Query: 74 ----LQMKFRTLVCTPTNVAIKELAARVVK-LVKESVERDCRDALFFPLGDILLLGNNER 128
+ K + L+C P+N A+ E+ R+ + + E+ E+ + P ++ +GN E
Sbjct: 1184 QSKSTESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEK------YIP--RVVRIGNPET 1235
Query: 129 LKVDSGVEEIYLDYRVKR 146
+ V V ++ L+Y+ ++
Sbjct: 1236 INV--SVRDLSLEYQTEK 1251
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 163/309 (52%), Gaps = 26/309 (8%)
Query: 336 LKSFCLKRASLFLSTAS-SSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAV 394
+++ L A + +T S S L + + ++IDEAAQ E+ + IP+Q G K V
Sbjct: 555 IRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQ-HGCKKVV 613
Query: 395 LFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYE 454
L GD QLPA + S ++ + + +SLF+RL S H+L+ QYRMH I FP+ +FY+
Sbjct: 614 LVGDPKQLPATIISPLAIKYKYDQSLFQRLQEKN-SPHMLTTQYRMHSLIRAFPSRHFYQ 672
Query: 455 NKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVF-------GGREEFIEHSCRNMVEVSVV 507
+ + D + R+ + P +GP F ++ GG F EH C+ +
Sbjct: 673 DLLLDGPNIPSRA--THYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECK------MA 724
Query: 508 MKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGG 567
M + K + D IGI+SPY QV+A++E + N G ++ ++DGFQG
Sbjct: 725 MYLFQLFTKVYPDEDFASRIGIISPYRQQVLALREI----FKNYPGISID--TVDGFQGR 778
Query: 568 EEDLIIISTVRS--NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALV 625
E ++II S VR+ G IGFLS+ +R+NVALTR R L ILGN + L+ K E +
Sbjct: 779 EREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQ 838
Query: 626 HDANARQCF 634
H N +Q
Sbjct: 839 HTQNNQQLI 847
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ 75
SST NDSQ A+ S L I LI GPPGTGKT + L+ +LL
Sbjct: 331 FSSTYNDSQLNALTSAL------EGNAITLIQGPPGTGKTHVILGLISVLLH 376
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 183/355 (51%), Gaps = 35/355 (9%)
Query: 296 IKYLLHKRRSECHFVLRKLQSSFNEL---------NLPSAVEKDLLE--DLLKSFCLKRA 344
+++L +SE H L++L+ EL NL A E+++ + D++ C+ A
Sbjct: 583 VRHLDTSEKSELH-KLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAA 641
Query: 345 SLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPA 404
L LS ++ V +IDE+ Q E E IPL L G+K VL GD CQL
Sbjct: 642 DLRLS----NFRFRQV--------LIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLGP 688
Query: 405 MVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVR 464
++ K + A +SLFERL LG L +QYRMHP++S FP++ FYE +++ T+
Sbjct: 689 VIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTII 748
Query: 465 KRSYEKRFLHGPMYGPYSFINVFGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSK 522
+R P+ F V G+EE S N E + V K++ K+ +
Sbjct: 749 ERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPS 808
Query: 523 EKLSIGIVSPYSAQ---VVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRS 579
+ IG+++PY Q +V + GS ++V S+D FQG E+D II+S VRS
Sbjct: 809 Q---IGVITPYEGQRAYIVNYMARNGS-LRQQLYKEIEVASVDSFQGREKDYIILSCVRS 864
Query: 580 NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCF 634
N IGFL++ +R+NVALTRAR+ + ILGN + L+ K+ +W L+ +C
Sbjct: 865 NEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS-KQPLWNGLLTHYKEHECL 918
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 20 FGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKF 78
FG LN SQ AV S L++ I LI GPPGTGKT T + ++ + Q +
Sbjct: 481 FGVPGLPELNASQVNAVKSVLQK-------PISLIQGPPGTGKTVTSAAIVYHMAKQGQG 533
Query: 79 RTLVCTPTNVAIKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERLKVDSGVEEI 138
+ LVC P+NVA+ +LA + + V R C + R V S VE +
Sbjct: 534 QVLVCAPSNVAVDQLAEK-ISATGLKVVRLCAKS---------------REAVSSPVEYL 577
Query: 139 YLDYRVKRL 147
L Y+V+ L
Sbjct: 578 TLHYQVRHL 586
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 145/263 (55%), Gaps = 11/263 (4%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 639 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 697
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVF 487
G L +QYRMHP++S FP++ FYE +++ T R + P F V
Sbjct: 698 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 757
Query: 488 GGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQE 542
G+EE S N E + V KI L KA + IGI++PY Q +V +
Sbjct: 758 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 814
Query: 543 KLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRAR 602
GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRAR
Sbjct: 815 FSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 873
Query: 603 HCLWILGNARTLTRKKSVWEALV 625
+ + I+GN + L+ K+ +W L+
Sbjct: 874 YGVIIVGNPKALS-KQPLWNHLL 895
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 477 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 529
Query: 87 NVAIKELAARV 97
N+A+ +L ++
Sbjct: 530 NIAVDQLTEKI 540
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 146/264 (55%), Gaps = 11/264 (4%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 644 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 702
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVF 487
G L +QYRMHP++S FP++ FYE +++ T R + P F V
Sbjct: 703 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 762
Query: 488 GGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQE 542
G+EE S N E + V KI L KA + IGI++PY Q +V +
Sbjct: 763 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 819
Query: 543 KLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRAR 602
GS + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRAR
Sbjct: 820 FSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 878
Query: 603 HCLWILGNARTLTRKKSVWEALVH 626
+ + I+GN + L+ K+ +W L++
Sbjct: 879 YGVIIVGNPKALS-KQPLWNHLLN 901
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 482 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 534
Query: 87 NVAIKELAARV 97
N+A+ +L ++
Sbjct: 535 NIAVDQLTEKI 545
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 159/315 (50%), Gaps = 32/315 (10%)
Query: 322 NLPSAVEKDLLE--DLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKES 379
NL A E LLE D++ C+ LS + +L IDE+ Q E
Sbjct: 578 NLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSIL------------IDESMQSTEP 625
Query: 380 ESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYR 439
E +P+ L G K +L GD CQL +V K + A +SLFERL LG L +QYR
Sbjct: 626 ECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYR 684
Query: 440 MHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCR 499
MHP +S FP+++FYE +++ R + F P F+ V G+EE
Sbjct: 685 MHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPERPMFFL-VTQGQEEIAGSGTS 743
Query: 500 --NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSA------QVVAIQEKLGSKYVNS 551
N E + V KI KA I ++ IGI++PY Q + Q L S+
Sbjct: 744 FLNRTEAANVEKITTRFLKAGIKPEQ---IGIITPYEGQRAYLVQYMQYQGSLHSRLYQE 800
Query: 552 AGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNA 611
+++ S+D FQG E+D+II+S VRSN IGFL++ +R+NVALTRA+ + I+GN
Sbjct: 801 ----IEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNP 856
Query: 612 RTLTRKKSVWEALVH 626
+ L K+ +W L++
Sbjct: 857 KVLA-KQQLWNHLLN 870
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRT-LVCTPT 86
LN SQ AV L++ + LI GPPGTGKT T + ++ L+++ T LVC P+
Sbjct: 452 LNRSQVYAVKHALQR-------PLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPS 504
Query: 87 NVAIKELAARV 97
N A+ +L ++
Sbjct: 505 NTAVDQLTEKI 515
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 150/272 (55%), Gaps = 11/272 (4%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E IP+ + G K +L GD QL ++ + + +A +SLFERL L
Sbjct: 569 VLIDESTQASEPECLIPI-VKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL 627
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYG-PYSFINV 486
G+ L +QYRM+P +S FP++ FYE +++ T+ +R+ P+ G P F
Sbjct: 628 GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWAN 687
Query: 487 FGGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQE-- 542
+G REE + S N +E +I+ L++ D + IG+++PY Q I +
Sbjct: 688 YG-REEISANGTSFLNRIEAMNCERIITKLFR---DGVKPEQIGVITPYEGQRAYILQYM 743
Query: 543 KLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRAR 602
++ V+V S+D FQG E+D II+S VR+N +IGFL + +R+NV LTRA+
Sbjct: 744 QMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAK 803
Query: 603 HCLWILGNARTLTRKKSVWEALVHDANARQCF 634
+ L ILGN R+L R ++W L+ + C
Sbjct: 804 YGLVILGNPRSLAR-NTLWNHLLIHFREKGCL 834
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 15/89 (16%)
Query: 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCT 84
+ LN SQ+ AV L++ + LI GPPGTGKT T + ++ L ++ K R LVC
Sbjct: 407 AQLNSSQSNAVSHVLQR-------PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 459
Query: 85 PTNVAIKELAA-------RVVKLVKESVE 106
P+NVA+ LAA +VV+L +S E
Sbjct: 460 PSNVAVDHLAAKLRDLGLKVVRLTAKSRE 488
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 150/272 (55%), Gaps = 11/272 (4%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E IPL L G K VL GD QL ++ +K + +A +SLFERL L
Sbjct: 618 VLIDESTQSAEPECMIPLVL-GCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL 676
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPM-YGPYSFINV 486
++ L +QYRMHP +S FP++ FYE +++ T +R + P+ P F +
Sbjct: 677 QFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSN 736
Query: 487 FGGRE-EFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ---VVAIQE 542
G E S N E + V KI+ +KA + + IG+++PY Q +V +
Sbjct: 737 LGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPAD---IGVITPYEGQRSYIVNTMQ 793
Query: 543 KLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRAR 602
G+ + + V+V S+D FQG E+D I++S VRSN IGFLS+ +R+NVALTRA+
Sbjct: 794 NTGT-FKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAK 852
Query: 603 HCLWILGNARTLTRKKSVWEALVHDANARQCF 634
+ L I+GN + L K +W L+ ++C
Sbjct: 853 YGLVIIGNPKVLC-KHELWHHLLVHFKDKKCL 883
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPT 86
LN SQ A+ L + LI GPPGTGKT T + ++ L +M + LVC P+
Sbjct: 456 LNASQIAAIKQVLSN-------PLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPS 508
Query: 87 NVAIKELAARV 97
NVA+ +L R+
Sbjct: 509 NVAVDQLCERI 519
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 167/329 (50%), Gaps = 31/329 (9%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAMEP------ 364
LRKL+ +F L+ L +++ L++A + +T A +P
Sbjct: 647 LRKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVG-------AGDPRLSQFR 699
Query: 365 LNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL 424
++IDE+ Q E E IPL + G K +L GD QL ++ K +A +SLFERL
Sbjct: 700 FPHILIDESTQASEPECLIPLMM-GAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFERL 758
Query: 425 SYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFI 484
LG+ L+IQYRMHPS++ FP++ YE ++ + R + +F P F
Sbjct: 759 ISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMFFF 818
Query: 485 NVFGGRE------EFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVV 538
N G E FI N E S+ KI+ + + IGI++PY Q
Sbjct: 819 NCTGSEEISSSGTSFI-----NTTEASICEKIVTKFLELGSLPGQ---IGIITPYEGQRA 870
Query: 539 AIQEKL-GSKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNV 596
I + S +N + +++V S+D FQG E+D II+S VRSN+ IGFL + +R+NV
Sbjct: 871 YITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNV 930
Query: 597 ALTRARHCLWILGNARTLTRKKSVWEALV 625
ALTRAR L ILGNA+ L+ K +W +L+
Sbjct: 931 ALTRARFGLIILGNAKVLS-KDPLWNSLI 958
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSML---LVILLQMKFRTLVCT 84
LN+SQ AV L A + LI GPPGTGKT S + LV ++ + LVCT
Sbjct: 537 LNESQISAVNKVL-------TAPLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCT 589
Query: 85 PTNVAIKELAARV 97
P+NVAI +L ++
Sbjct: 590 PSNVAIDQLTGKL 602
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 170/331 (51%), Gaps = 34/331 (10%)
Query: 311 LRKLQSSFNELN---------LPSAVEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVA 361
L KL+S NEL+ L +A EK+LL RA+ + ++
Sbjct: 505 LLKLRSENNELSIQDEKKLRILVAAAEKELL----------RAAHVICCTCVGAGDRRIS 554
Query: 362 MEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLF 421
++IDEA Q E E IPL L G K VL GD QL +V +K A +SLF
Sbjct: 555 KYKFRSVLIDEATQASEPECMIPLVL-GAKQVVLVGDHQQLGPVVMNKKVALASLSQSLF 613
Query: 422 ERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPY 481
ERL LG S L +QYRMHP +S FP++ FYE +++ T +R R + P P
Sbjct: 614 ERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERI--ARHVDFPWIQPD 671
Query: 482 SFINVFG--GREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ- 536
S + + G+EE S N E S KI+ ++ + ++ IGIV+PY Q
Sbjct: 672 SPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ---IGIVTPYDGQR 728
Query: 537 --VVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRV 594
+V + GS + AV+V S+D FQG E+D II+S VRS+ IGF+++ +R+
Sbjct: 729 SYIVQYMQNNGSMQKDLYK-AVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRL 787
Query: 595 NVALTRARHCLWILGNARTLTRKKSVWEALV 625
NVALTRA++ + +LGN + L K ++W V
Sbjct: 788 NVALTRAKYGVIVLGNPKVLA-KHALWYHFV 817
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 21/93 (22%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFR-------T 80
LN SQ++AV + L + + LI GPPGTGKT T + ++ L M+ R
Sbjct: 393 LNASQSEAVRAVLSK-------PLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPV 445
Query: 81 LVCTPTNVAIKELAA-------RVVKLVKESVE 106
LVC P+NVA+ +LA RVV++ +S E
Sbjct: 446 LVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSRE 478
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 148/279 (53%), Gaps = 19/279 (6%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E E + + + G++ VL GD CQL +V K + A +SLFERL L
Sbjct: 607 VLIDESTQATEPEILVSI-MRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL 665
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVF 487
G L +QYRMHP +S FP++ FY+ +++ T R H P +F
Sbjct: 666 GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFWHC 725
Query: 488 GGREEFIEHSCR--NMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ------VVA 539
G EE N E + V K++ L KA + + IG+++ Y Q +
Sbjct: 726 SGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQ---IGVITSYEGQRSFIVNYMH 782
Query: 540 IQEKLGSK-YVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVAL 598
Q L SK Y N V++ S+D FQG E+D II++ VRSN+ IGFLS+ +R+NVA+
Sbjct: 783 TQGTLNSKLYEN-----VEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAI 837
Query: 599 TRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNA 637
TRA++ L ++GNA+ L R +W L++ +++ +
Sbjct: 838 TRAKYGLVLVGNAKVLAR-HDLWHELINHYKSKEMLYEG 875
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPT 86
LN SQ QAV L + + LI GPPGTGKT + ++ L+Q + LVC+P+
Sbjct: 446 LNSSQMQAVKQVLTR-------PLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPS 498
Query: 87 NVAIKELAARVVK 99
N+A+ LA ++ K
Sbjct: 499 NIAVDHLAEKIHK 511
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 145/263 (55%), Gaps = 9/263 (3%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
++IDE+ Q E + P++L G K +L G+ + V K + +A +SLFERL L
Sbjct: 615 ILIDESTQATEPKCIGPVEL-GAKQLIL-GEITASWSCVMCKKAAKAGLSQSLFERLVVL 672
Query: 428 GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVF 487
G L +QYRMHP++S FP++ FYE +++ T R + P F V
Sbjct: 673 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYVT 732
Query: 488 GGREEFIEH--SCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQ-VVAIQEKL 544
G+EE S N E + V KI L KA + IGI++PY Q +Q
Sbjct: 733 QGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 789
Query: 545 GSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHC 604
S +++ + V++ S+D FQG E+D II+S VR+N IGFL++ +R+NVALTRA++
Sbjct: 790 FSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYG 849
Query: 605 LWILGNARTLTRKKSVWEALVHD 627
+ I+GN + L+ K+ +W L+++
Sbjct: 850 VIIVGNPKALS-KQPLWNNLLNN 871
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVIL-LQMKFRTLVCTPT 86
LN SQ AV + L++ + LI GPPGTGKT T + ++ L Q LVC P+
Sbjct: 453 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPS 505
Query: 87 NVAIKELAARVVK 99
N+A+ +L ++ K
Sbjct: 506 NIAVDQLTEKIDK 518
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 152/283 (53%), Gaps = 27/283 (9%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFER 423
P + +++DEA Q E E+ PL + +L GD QLP V S + E + +S+ R
Sbjct: 2174 PFSCVIVDEAGQSCEIETLTPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2232
Query: 424 LSYL--GYSKH---------LLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
L +H L++QYRMHP I FP++Y Y ++ +++ R
Sbjct: 2233 FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLK----TNRQTEAIRC 2288
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS---IGI 529
+ PY +V G E S N+ E+ +VM+I+ K D ++ +S IGI
Sbjct: 2289 SSDWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII----KLIKDKRKDVSFRNIGI 2344
Query: 530 VSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN-GGSIGFL 588
++ Y AQ IQ+ L ++ + G A +V ++D FQG ++D +I++ VR+N+ GSIGFL
Sbjct: 2345 ITHYKAQKTMIQKDLDKEF-DRKGPA-EVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFL 2402
Query: 589 SNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANAR 631
++ +R+NV +TRA++ L+ILG+ RTL + W L+ DA R
Sbjct: 2403 ASLQRLNVTITRAKYSLFILGHLRTLMENQH-WNQLIQDAQKR 2444
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 24/115 (20%)
Query: 49 ATIQLIWGPPGTGKTKTVSMLLVILLQ----------------MKFRTLVCTPTNVAIKE 92
A I LI GPPGTGK+KT+ LL LL + R LVC P+N A+ E
Sbjct: 1956 AKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDE 2015
Query: 93 LAARVVKLVKESVERDCRDALFFPL---GDILLLGNNERLKVDSGVEEIYLDYRV 144
L +++ KE C+D PL GDI L+ ++S V + LD +V
Sbjct: 2016 LMKKIILEFKEK----CKDKK-NPLGNCGDINLVRLGPEKSINSEVLKFSLDSQV 2065
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 148/288 (51%), Gaps = 21/288 (7%)
Query: 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFER 423
P + +++DEA Q E E+ PL + +L GD QLP V S + E + +S+ R
Sbjct: 2150 PFSCVIVDEAGQSCEVETLSPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2208
Query: 424 LSYL---GYSKHL--------LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF 472
L +++ L+IQYRMHP I FP++Y Y ++ + +
Sbjct: 2209 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESIRCSSEW 2268
Query: 473 LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
+ PY +V G E S N+ E+ +VM+I+ L K +IGI++
Sbjct: 2269 ----PFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKEKRKDISFRNIGIITH 2323
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN-GGSIGFLSNS 591
Y AQ IQ+ L ++ + G A +V ++D FQG ++D II++ VR++ GSIGFL++
Sbjct: 2324 YKAQKTMIQKDLEKEF-DKKGPA-EVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASL 2381
Query: 592 KRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNADD 639
+R+NV +TRA++ L+ILG+ RTL + W L+ DA R D
Sbjct: 2382 QRLNVTITRAKYSLFILGHLRTLMENQH-WYELIQDAQKRGAIIKTSD 2428
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 24/115 (20%)
Query: 49 ATIQLIWGPPGTGKTKTVSMLLVILLQ----------------MKFRTLVCTPTNVAIKE 92
A I LI GPPGTGK+KT+ LL LL + R LVC P+N A+ E
Sbjct: 1932 AKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDE 1991
Query: 93 LAARVVKLVKESVERDCRDALFFPL---GDILLLGNNERLKVDSGVEEIYLDYRV 144
L +++ KE C+D PL GDI L+ +++ V + LD +V
Sbjct: 1992 LMKKIILEFKEK----CKDKK-NPLGNCGDINLVRLGPEKSINTEVLKFSLDSQV 2041
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 149/306 (48%), Gaps = 65/306 (21%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL 427
+++DEA Q E+ + +PL L GI++ V GDE QL S SN SLFER+
Sbjct: 817 VIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQL-----SSFSNIPQLETSLFERVLSN 871
Query: 428 GYSKH--LLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY------G 479
G K+ +L QYRMHP IS FP Y +++D T ++++ + P++ G
Sbjct: 872 GTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKDGVTDEQKAWPG--VQHPLFFYQCDLG 929
Query: 480 PYSFI-----NVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLS-IGIVSPY 533
P S + ++ G E +H C VE+ +++IL+ +D K L IG+++PY
Sbjct: 930 PESRVRSTQRDIVGFTYEN-KHEC---VEIVKIIQILM------LDKKVPLEEIGVITPY 979
Query: 534 SAQVVAIQEKLGSKYV------------------NSAGF----------------AVKVM 559
SAQ + + L V N+AG + V
Sbjct: 980 SAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVA 1039
Query: 560 SIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKS 619
++D FQG E+ II S VR+N IGFL + +R+NVALTRA+H L ++GN L +
Sbjct: 1040 TVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRKGDP 1099
Query: 620 VWEALV 625
+W+ +
Sbjct: 1100 LWKDYI 1105
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 20/109 (18%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLV 82
S LN SQ AV L +I ++ GPPGTGKT T+ +++ +++ F L
Sbjct: 646 SDKLNRSQKTAVEHVLNN-------SITILQGPPGTGKTSTIEEIIIQVIERFHAFPILC 698
Query: 83 CTPTNVAIKELAARVV---------KLVKESVERDCRDALFFPLGDILL 122
+N+AI +A +++ +++ + E+ D PLG+I L
Sbjct: 699 VAASNIAIDNIAEKIMENRPQIKILRILSKKKEQQYSDD--HPLGEICL 745
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 144/275 (52%), Gaps = 16/275 (5%)
Query: 362 MEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVE-SKVSNEACFGR 418
M L F +V+DE +Q+ E S +P+ + +L GD QLP ++ S ++E +
Sbjct: 620 MNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQ 679
Query: 419 SLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMY 478
+LF+RL +G+ LL QYR HP+IS N FY+ + + T +RS +L
Sbjct: 680 TLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWL----- 734
Query: 479 GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVV 538
F NV G + ++S N+ E + +K++ +L + I IG+++ Y +Q+
Sbjct: 735 PTLCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGS---MIGVITLYKSQMY 791
Query: 539 AIQEKLGSKYVNSAGF-AVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVA 597
+ L + + V+V ++D FQG E+++II+S VR+ +GF+ + KR+NVA
Sbjct: 792 KLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVA 848
Query: 598 LTRARHCLWILGNARTLTRKKSVWEALVHDANARQ 632
LTR + L I+GN L RK +W ++ R+
Sbjct: 849 LTRGKRHLLIVGNLACL-RKNQLWGRVIQHCEGRE 882
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 140/265 (52%), Gaps = 37/265 (13%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL--S 425
++IDEA+Q E + IPL G+ +L GD QL V+SK S+FERL S
Sbjct: 386 VIIDEASQALEPQCWIPLL--GMNKVILAGDHMQLSPNVQSKRPY-----ISMFERLVKS 438
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKR-------SYEKRFLHGPMY 478
K L+IQYRMH IS FP+ FY++K+ + V+KR E P+Y
Sbjct: 439 QGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIY 498
Query: 479 GPYSFINVFGGREE---------FIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGI 529
F + G +E F + S N E +V + L +A +++K+ I +
Sbjct: 499 ----FYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKD---IAV 551
Query: 530 VSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLS 589
V+PY+AQV I++ L K G V++ S+D QG E++ II S VRSN+ +GFL+
Sbjct: 552 VTPYNAQVALIRQLLKEK-----GIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLA 606
Query: 590 NSKRVNVALTRARHCLWILGNARTL 614
+R+NVA+TR + L ++G++ T+
Sbjct: 607 EKRRLNVAITRPKRHLCVIGDSNTV 631
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARV 97
+ LI GPPGTGKT T+ ++ L+ R LVC +N+A+ + R+
Sbjct: 227 LSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRL 273
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 32/266 (12%)
Query: 365 LNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL 424
+ +VIDE +Q E IP+ + G + ++ GD QLP V +S ++LFERL
Sbjct: 395 FDVIVIDEGSQAMEPSCLIPI-VKG-RKLIMAGDHKQLPPTV---LSENEELKKTLFERL 449
Query: 425 --SYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRK-------RSYEKRFLHG 475
Y +S +L IQYRM+ I FPN FY NK++ +V+ + E +
Sbjct: 450 IKKYPEFS-SILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDR 508
Query: 476 PMYG--PYSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSP 532
+ P FINV G R++ S N+ E V++I+ L K K+ +++P
Sbjct: 509 DIINEIPVQFINVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKY------KIPTNVITP 562
Query: 533 YSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSK 592
Y AQV ++ + ++V ++DGFQG E + I+IS VR+ N GFL + +
Sbjct: 563 YDAQVRYLR-----RLFEEHNIDIEVNTVDGFQGRENEAIVISFVRTKN---FGFLKDLR 614
Query: 593 RVNVALTRARHCLWILGNARTLTRKK 618
R+NVA+TRA+ L ++GN L + K
Sbjct: 615 RLNVAITRAKRKLILIGNENLLKQDK 640
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVC 83
LN+SQ AV + + LI GPPGTGKT+T++ ++V ++ K + L
Sbjct: 182 DKNLNESQKLAVKKAVLS------RDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLAT 235
Query: 84 TPTNVAIKELAARVVK 99
+N+A + ++K
Sbjct: 236 ADSNIAADNILEYLIK 251
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 157/316 (49%), Gaps = 29/316 (9%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNF---LVIDEAAQLKESESTIPLQLSGIKHAVLFG 397
L A++ L+T + + + + P ++ +VIDE AQ E+ IPL + + +L G
Sbjct: 342 LTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKA--RKCILAG 399
Query: 398 DECQLPAMVESKVSNEACFGRSLFERLS--YLGYSKHLLSIQYRMHPSISCFPNSYFYEN 455
D QLP S + A SL ERL+ Y L++QYRMH +I + + Y
Sbjct: 400 DHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLG 459
Query: 456 KIRDSSTVRKRSYEKRFLHGPMYG-----PYSFINVFGGR----EEFIEHSCRNMVEVSV 506
++ S+V + + R L G P ++ G EE E S N EV +
Sbjct: 460 QLTAHSSVAR--HLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRL 517
Query: 507 VMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQG 566
V + L A + +++ I +VSPY+ QV +++ L ++ +++ S+DGFQG
Sbjct: 518 VSLHIQALVDAGVPARD---IAVVSPYNLQVDLLRQSLVHRHPE-----LEIKSVDGFQG 569
Query: 567 GEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRK---KSVWEA 623
E++ +I+S VRSN G +GFL+ +R+NVA+TRAR + ++ ++RT+ K++ E
Sbjct: 570 REKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEY 629
Query: 624 LVHDANARQCFFNADD 639
R F DD
Sbjct: 630 FTQHGEVRTAFEYLDD 645
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
L+ SQ +AVL L Q + +I GPPGTGKT TV +++ ++ + L C P+N
Sbjct: 192 LDTSQKEAVLFALSQKE------LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 245
Query: 88 VAIKELAARVVKLVKESVER 107
+A+ L R+ L K+ + R
Sbjct: 246 IAVDNLVERLA-LCKQRILR 264
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 146/297 (49%), Gaps = 44/297 (14%)
Query: 341 LKRASLFLST---ASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFG 397
L A + L+T ASS L + + + +V+DE AQ E+ IPL L K +L G
Sbjct: 341 LTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPL-LKAPK-CILAG 398
Query: 398 DECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH------LLSIQYRMHPSISCFPNSY 451
D QLP S + A RSL ERL+ KH +L++QYRMH +I C+ +
Sbjct: 399 DHRQLPPTTVSHRAALAGLSRSLMERLA----EKHGAGVVRMLTVQYRMHQAIMCWASEA 454
Query: 452 FYENKIRDSSTVRKR----------SYEKRFLHGPMYGPYSFINVFGGR----EEFIEHS 497
Y + +V + E R P I+ G EE S
Sbjct: 455 MYHGQFTSHPSVAGHLLKDLPGVTDTEETRV-------PLLLIDTAGCGLLELEEEDSQS 507
Query: 498 CRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVK 557
N EV +V + L A + + + I +++PY+ QV +++ L +K+ ++
Sbjct: 508 KGNPGEVRLVTLHIQALVDAGVQAGD---IAVIAPYNLQVDLLRQSLSNKHPE-----LE 559
Query: 558 VMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTL 614
+ S+DGFQG E++ ++++ VRSN G +GFL+ +R+NVA+TRAR + ++ ++ T+
Sbjct: 560 IKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTV 616
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 22 PSLS---STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF 78
P LS +TL+ SQ +AV L Q + +I GPPGTGKT TV +++ ++
Sbjct: 182 PPLSFYNTTLDLSQKEAVSFALAQKE------LAIIHGPPGTGKTTTVVEIILQAVKQGL 235
Query: 79 RTLVCTPTNVAIKELAARVV 98
+ L C P+N+A+ L R+
Sbjct: 236 KVLCCAPSNIAVDNLVERLA 255
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 156/316 (49%), Gaps = 29/316 (9%)
Query: 341 LKRASLFLST---ASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFG 397
L A + L+T ASS L + + +V+DE AQ E+ IPL L K +L G
Sbjct: 341 LTAADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEASCWIPL-LKAPK-CILAG 398
Query: 398 DECQLPAMVESKVSNEACFGRSLFERL--SYLGYSKHLLSIQYRMHPSISCFPNSYFYEN 455
D QLP S + A RSL ERL + + +L++QYRMH +I+ + + Y
Sbjct: 399 DHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHG 458
Query: 456 KIRDSSTVRKRSYEKRFLHG-----PMYGPYSFINVFG-GREEFIE---HSCRNMVEVSV 506
++ +V + + L G P I+ G G E E S N EV +
Sbjct: 459 QLTAHPSVA--GHLLKDLPGVADTEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRL 516
Query: 507 VMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQG 566
V + L A + + + I +++PY+ QV +++ L +K+ +++ S+DGFQG
Sbjct: 517 VTLHIQALVDAGVHAGD---IAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQG 568
Query: 567 GEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRK---KSVWEA 623
E++ +I++ VRSN G +GFL+ +R+NVA+TRAR + ++ ++RT+ K++ +
Sbjct: 569 REKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDY 628
Query: 624 LVHDANARQCFFNADD 639
R F DD
Sbjct: 629 FTEHGEVRTAFEYLDD 644
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
++ L+ SQ +AV L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 188 NTALDPSQKEAVSFALAQKE------VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCA 241
Query: 85 PTNVAIKELAARVV 98
P+NVA+ L R+
Sbjct: 242 PSNVAVDNLVERLA 255
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 165/343 (48%), Gaps = 46/343 (13%)
Query: 311 LRKLQSSFNELNLPSAVEKDLLE----DLLKSFCLKRASLFLSTASSSYMLHSVAM---E 363
L+K Q F L + D+ E ++ K+ +K S +S ++ + M
Sbjct: 690 LKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAKSIKSLSALEELYNSQPVVATTCMGVNH 749
Query: 364 PL------NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFG 417
P+ +F ++DEA+Q+ + PL + VL GD QLP +V+S + E
Sbjct: 750 PIFTRRRFDFCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMS 807
Query: 418 RSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKI-----RDSSTVRKRSYEKRF 472
SLF+RL + L++QYRM+ I N YE ++ R S+ V + + K
Sbjct: 808 ESLFKRLERNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTL 867
Query: 473 L--------HGPMY--------GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYK 516
L M+ P F+N + +E + + + K++ +L K
Sbjct: 868 LLELEFRESQESMWIKDVLEPSNPVCFLNT--EKIPALETEEKGGISNWIEAKLVFHLTK 925
Query: 517 AWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNS-AGFAVKVMSIDGFQGGEEDLIII 574
++ + + S IGI++PY Q+ K+ S Y NS + AV+V ++D +QG ++ +II+
Sbjct: 926 LYLKAGCRPSDIGIIAPYRQQL-----KMISNYFNSLSASAVEVNTVDKYQGRDKSVIIV 980
Query: 575 STVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTR 616
S VRSN G +G L + +R+NVALTRA+H L +LG TL R
Sbjct: 981 SFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNR 1023
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 20 FGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQ---------LIWGPPGTGKTKTVSMLL 70
F LSS L V S LR + K ++ LI G PGTGKT T+ L+
Sbjct: 604 FVQHLSSILPPDAKDIVASILRGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLV 663
Query: 71 VILLQMKFRTLVCTPTNVAIKELAARVVK 99
IL F L+ + T+ A+ + ++ K
Sbjct: 664 RILYACGFSVLLTSYTHSAVDNILLKLKK 692
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 155/316 (49%), Gaps = 29/316 (9%)
Query: 341 LKRASLFLST---ASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFG 397
L A + L+T AS+ L + + + +V+DE AQ E+ IPL L K +L G
Sbjct: 341 LSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDECAQALEASCWIPL-LKAPK-CILAG 398
Query: 398 DECQLPAMVESKVSNEACFGRSLFERLS--YLGYSKHLLSIQYRMHPSISCFPNSYFYEN 455
D QLP S + A RSL ERL+ + +L++QYRMH +I+ + + Y
Sbjct: 399 DHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHG 458
Query: 456 KIRDSSTVRKRSYEKRFLHG-----PMYGPYSFINVFGGR----EEFIEHSCRNMVEVSV 506
++ +V + + L G P I+ G EE S N EV +
Sbjct: 459 QLTAHPSV--AGHLLKDLPGVADTEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRL 516
Query: 507 VMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQG 566
V + L A + + + I +++PY+ QV +++ L +K+ +++ S+DGFQG
Sbjct: 517 VTLHIQALVDAGVQAGD---IAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQG 568
Query: 567 GEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRK---KSVWEA 623
E++ +I++ VRSN G +GFL+ +R+NVA+TRAR + ++ ++ T+ K++ +
Sbjct: 569 REKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDY 628
Query: 624 LVHDANARQCFFNADD 639
R F DD
Sbjct: 629 FTEHGEVRTAFEYLDD 644
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84
++TL+ SQ +AV L Q + +I GPPGTGKT TV +++ ++ + L C
Sbjct: 188 NTTLDPSQKEAVSFALAQKE------VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 241
Query: 85 PTNVAIKELAARVVKLVKESVER 107
P+N+A+ L R+ L K+ + R
Sbjct: 242 PSNIAVDNLVERLA-LCKKQILR 263
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 164/339 (48%), Gaps = 47/339 (13%)
Query: 312 RKLQSSFNELNLPSAVEKDLLEDLLKSF--CLKRASLFLST--ASSSYMLHSVAMEPLNF 367
++ + ++NE+ L + KDL + K+ + ++ + ++T SSS L S+ + NF
Sbjct: 330 KQRKENWNEIKL---LRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNF 386
Query: 368 -----LVIDEAAQLKESESTIPL--QLSGIKHAVLFGDECQLPAMVESKVSNEACFG--R 418
L+IDE +Q E + IPL + VL GD QLP ++++
Sbjct: 387 QLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLET 446
Query: 419 SLFERLSYLGYSKHL---LSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHG 475
+LF+R+ + + + L++QYRM+ I FP+ Y K+ +TV R +
Sbjct: 447 TLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANR----LLIDL 502
Query: 476 PMYG------------PYSFINVFG------GREEFIEHSCRNMVEVSVVMKILLNLYKA 517
P P + + G E I S N E+++V + + NL
Sbjct: 503 PTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSF 562
Query: 518 WIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTV 577
+ SIG++SPY+AQV +++ + + +++ ++DGFQG E+D+II+S V
Sbjct: 563 NVPEN---SIGVISPYNAQVSHLKKLIHDEL---KLTDIEISTVDGFQGREKDVIILSLV 616
Query: 578 RSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTR 616
RSN +GFL +R+NVA+TR R L ++GN L R
Sbjct: 617 RSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQR 655
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL--QMKFRTL 81
L+ LNDSQ A+ + + +I GPPGTGKT T+ L+ LL + R L
Sbjct: 204 LNPNLNDSQKTAINFAINN-------DLTIIHGPPGTGKTFTLIELIQQLLIKNPEERIL 256
Query: 82 VCTPTNVAIKELAARVVKLV 101
+C P+N+++ + R+ LV
Sbjct: 257 ICGPSNISVDTILERLTPLV 276
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 140/289 (48%), Gaps = 40/289 (13%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHA-----VLFGDECQLPAMVESKVSNEACFGRSLFE 422
+ +DEA E E I + ++G+ +A VL GD QL ++ S + + G SL E
Sbjct: 669 IFVDEAGHAVEPE--IVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLE 726
Query: 423 RLSYLG-------------YSKHLLSIQYRMHPSISCFPNSYFYENKIRD-SSTVRKRSY 468
RL Y LL YR HPSI PN FY+N+++ + + R Y
Sbjct: 727 RLMTQNELYQKGDTGFDNRYVTKLLQ-NYRSHPSILKVPNELFYDNELKACADEISSRQY 785
Query: 469 EKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVM----KILLNLYKAWIDSK 522
+ H P G P F V G E E S N E+ +M K+LL K I
Sbjct: 786 CT-WEHLPKRGFPVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKI 844
Query: 523 EKLSIGIVSPYSAQVVAIQE--KLGSKYVNSAGFA-VKVMSIDGFQGGEEDLIIISTVRS 579
IGI++PY QV I++ K+ + + +G +KV S++ FQG E +II+STVRS
Sbjct: 845 SPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRS 904
Query: 580 -------NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVW 621
++ +IGFL N KR NVA+TRA+ L ++GN + R +W
Sbjct: 905 SKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNP-IILRTDEIW 952
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 48 KATIQLIWGPPGTGKTKTV--SMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98
K L++GPPGTGKT T+ ++ V R L C P+N A +L +++
Sbjct: 542 KPAPYLVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKLI 594
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 138/294 (46%), Gaps = 33/294 (11%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS 425
+F ++DEA+Q+ + PL S + VL GD QLP +V ++ + SLF+RL
Sbjct: 757 DFCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFKRLE 814
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS--------------TVRKRSY--- 468
+ L+IQYRM+ I N YE K+ S VR Y
Sbjct: 815 RNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADY 874
Query: 469 -EKRFLHGPMY--GPYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKE 523
+ +L G P F+N E+ N+ E +++ + KA +
Sbjct: 875 SDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSD 934
Query: 524 KLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGG 583
IGI++PY Q+ I + L V V+V ++D +QG ++ LI++S VRSN G
Sbjct: 935 ---IGIIAPYRQQLRTITDLLARSSVG----MVEVNTVDKYQGRDKSLILVSFVRSNEDG 987
Query: 584 SIG-FLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFN 636
++G L + +R+NVA+TRA+H L +LG+ +L R + E L NA Q N
Sbjct: 988 TLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPL-EKLFDHLNAEQLISN 1040
Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 626 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICALVRILSACGFSVLLTSYTH 679
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 680 SAVDNILLKLAK 691
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 149/323 (46%), Gaps = 35/323 (10%)
Query: 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPL-QLSGIKHAVL 395
+ F L R + L T S + S+ + + +++DEA E E+ IPL Q + VL
Sbjct: 2327 RKFELDRHEVILCTCSCAASA-SLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVVL 2385
Query: 396 FGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYEN 455
GD QL +V+++ RSLFER H+L QYRMH I FP+ FY++
Sbjct: 2386 LGDHKQLRPVVKNERLQNLGLDRSLFERYHE---DAHMLDTQYRMHEGICAFPSVAFYKS 2442
Query: 456 KIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFI-------EHSCRNMVEVSVVM 508
K++ +R R G P F +V G + E+S N+ EV+ V+
Sbjct: 2443 KLKTWQGLR-RPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEVV 2501
Query: 509 KILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFA-VKVMSIDGFQGG 567
+I L + E I +++PY+AQ I SK + G A V V SI QG
Sbjct: 2502 RITKQLTLG--RTVEPQDIAVLTPYNAQASEI-----SKALRREGIAGVAVSSITKSQGS 2554
Query: 568 EEDLIIISTVRSNNGGS-------------IGFLSNSKRVNVALTRARHCLWILGNARTL 614
E +++STVR+ +GF+ + +VNVA+TRA+ L ++G+ L
Sbjct: 2555 EWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD-HLL 2613
Query: 615 TRKKSVWEALVHDANARQCFFNA 637
R +W +L+ A+Q A
Sbjct: 2614 LRCCPLWRSLLDFCEAQQTLVPA 2636
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 147/316 (46%), Gaps = 38/316 (12%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQL-SGIKHAVLFGDE 399
L R + ++T S + L V + + ++IDEAAQ+ E E+ PL S VL GD
Sbjct: 638 LARHRVVVTTTSQARELR-VPVGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDH 696
Query: 400 CQLPAMVESKVSNEACFGRSLFERLSYLGYSK--HLLSIQ--------YRMHPSISCFPN 449
Q+ + S V+ +L RL +L Y + H ++ Q YR +I F +
Sbjct: 697 MQVTPRLFS-VARARAAEHTLLHRL-FLCYQQETHEVARQSRLVFHENYRCTDAIVSFIS 754
Query: 450 SYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIE-HSCRNMVEVSVVM 508
+FY K + + R + P + P F +V G + + S N+ E++ V+
Sbjct: 755 RHFYVAK---GNPIHARG---KVPPHPRHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVV 808
Query: 509 KILLNLYKAWID---SKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQ 565
+ + Y W +E+ I +VS + AQV A++++L + + V V S +
Sbjct: 809 EKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQELRRRDLGQ----VSVGSFEILP 863
Query: 566 GGEEDLIIISTVRSNNG----GSIG--FLSNSKRVNVALTRARHCLWILGNARTLTRKKS 619
G + ++++STV + G++ F ++++ +N LTRA+ L ++G+A L +
Sbjct: 864 GRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVALCSFGA 923
Query: 620 ---VWEALVHDANARQ 632
+WE+ + + R
Sbjct: 924 CGKLWESFIRECVERH 939
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 53 LIWGPPGTGKTKTVSML-LVILLQMKFRTLVCTPTNVA 89
LI+GP GTGKT T++M L ++ + + + L+CT TN A
Sbjct: 541 LIYGPFGTGKTYTLAMASLEVIRRPETKVLICTHTNSA 578
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 43/334 (12%)
Query: 327 VEKDLLEDLLKSFCLKRASLFLSTASSSYMLHSVAM---------EPLNFLVIDEAAQLK 377
++K E++ +S +K +L +S ++ + M + +F ++DEA+Q+
Sbjct: 709 IQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKTFDFCIVDEASQIS 768
Query: 378 ESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQ 437
+ PL S + VL GD QLP +V ++ + SLF+RL + L++Q
Sbjct: 769 QPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQ 826
Query: 438 YRMHPSISCFPNSYFYENKIR------DSSTVRKRSYEKRFLHGPMYGPYS--------- 482
YRM+ I N YE K+ ++ + +++ L Y YS
Sbjct: 827 YRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADYSENPWLIAAF 886
Query: 483 -------FINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPY 533
F+N E+ + N++E +V+ + KA + IGI++PY
Sbjct: 887 EPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSD---IGIIAPY 943
Query: 534 SAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSK 592
Q+ I + L V V+V ++D +QG ++ ++++S VRSN G++G L + +
Sbjct: 944 RQQLKVISDLLAQSSVG----MVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELLKDWR 999
Query: 593 RVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
R+NVA+TRA+H L +LG +L+R + + L H
Sbjct: 1000 RLNVAITRAKHKLILLGCVPSLSRYPPLRKLLNH 1033
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 626 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTH 679
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 680 SAVDNILLKLAK 691
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 154/319 (48%), Gaps = 37/319 (11%)
Query: 340 CLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGIKHAV--L 395
L R L +ST S+ +L++ + +F +++DEA Q E E+ I + + V L
Sbjct: 512 ALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVL 571
Query: 396 FGDECQLPAMVESKVSNEACFGRSLFERLSYLGY-----SKHLLSI--QYRMHPSISCFP 448
GD QL ++ S+ + G+S ERL Y ++ + YR HP I P
Sbjct: 572 AGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLP 631
Query: 449 NSYFYENKI----RDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGRE-EFIEHSCRNMVE 503
+ FY+ ++ D+ +V FL + P F + G E E S N +E
Sbjct: 632 SKLFYDGELVASKEDTDSVLA---SLNFLPNKEF-PMVFYGIQGCDEREGNNPSWFNRIE 687
Query: 504 VSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDG 563
+S V++ + L D ++ IG+++PY QV+ I+E L + VKV S++
Sbjct: 688 ISKVIETIKRLTAN--DCVQEEDIGVITPYRQQVMKIKEVLDRLDMTE----VKVGSVEQ 741
Query: 564 FQGGEEDLIIISTVRS-------NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTR 616
FQG E+ +IIISTVRS + +GFLSN +R NVA+TRA L I+GN + +
Sbjct: 742 FQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICK 801
Query: 617 KKSVWEALVH---DANARQ 632
+ W L+ D NA Q
Sbjct: 802 DMN-WNKLLWRCVDNNAYQ 819
Score = 40.8 bits (94), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 24 LSSTLNDSQA---QAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL--QMKF 78
+S LN Q + VL C A +I GPPGTGKT T+ +V L Q
Sbjct: 393 ISPALNAEQICSIEMVLGC-------KGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNA 445
Query: 79 RTLVCTPTNVAIKELAARVVKL 100
R LVC P+N A + +++ L
Sbjct: 446 RVLVCAPSNSAADHILEKLLCL 467
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 143/309 (46%), Gaps = 47/309 (15%)
Query: 368 LVIDEAAQLKESESTIPLQLSGIKHA--VLFGDECQLPAMVESKVSNEACFGRSLFERL- 424
++ DEA Q E E+ +P+ + K + VL GD QL ++V S+++++ F S ERL
Sbjct: 945 VLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLL 1004
Query: 425 -------------SYLGYSKHLLS---IQYRMHPSISCFPNSYFYENKIRDSSTVRKRSY 468
GY+ +L+ YR PSI + FY++++ + K S
Sbjct: 1005 ERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLS-EKDSR 1063
Query: 469 EKRFLHG-----------PMYGPYSFINVFG-GREEFIEHSCRNMVEVSVVMKILLNLYK 516
E R L P F + G R+ S N EV V + + LY+
Sbjct: 1064 ESRLLSKLRCVFESEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYR 1123
Query: 517 AWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIIST 576
A + + + IGI++PY QV + L S ++ + K+ S++ FQG E D+I+IST
Sbjct: 1124 ANVTADQ---IGIITPYQKQV----KMLRSMFIGTDVVMPKIGSVEEFQGQERDIILIST 1176
Query: 577 VRSNN-------GGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDAN 629
VRS+ S+GF+ SKR+NVA++RAR + I GN L + W L+
Sbjct: 1177 VRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDE-CWRQLILFCV 1235
Query: 630 ARQCFFNAD 638
+F D
Sbjct: 1236 KNNAYFGCD 1244
Score = 37.4 bits (85), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-----KFR 79
+ +LN Q +AV + LR + + +++GPPG+GKT T L+ LLQ+ R
Sbjct: 781 NQSLNSIQKRAVFNILR---GEAENIPYVLFGPPGSGKTMT---LIETLLQLVRNLPGAR 834
Query: 80 TLVCTPTNVAIKELAARVV 98
LV TP+N + + R++
Sbjct: 835 ILVGTPSNSSADLVTKRLI 853
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 131/274 (47%), Gaps = 35/274 (12%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS 425
+F ++DEA+Q+ + PL S + VL GD QLP +V ++ + SLF+RL
Sbjct: 757 DFCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLE 814
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSS------TVRKRSYEKRFLHGPMYG 479
+ L++QYRM+ I N YE K+ S + R ++ L Y
Sbjct: 815 QNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYA 874
Query: 480 PYS----------------FINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDS 521
YS F+N E+ + N+ E +++ + KA
Sbjct: 875 DYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSP 934
Query: 522 KEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN 581
+ IGI++PY Q+ I + L S G V+V ++D +QG ++ ++++S VRSN
Sbjct: 935 SD---IGIIAPYRQQLKIINDLLA----RSIGM-VEVNTVDKYQGRDKSIVLVSFVRSNK 986
Query: 582 GGSIG-FLSNSKRVNVALTRARHCLWILGNARTL 614
G++G L + +R+NVA+TRA+H L +LG +L
Sbjct: 987 DGTVGELLKDWRRLNVAITRAKHKLILLGCVPSL 1020
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 626 LNKPQRQAMKKVL--LSKDYT----LIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTH 679
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 680 SAVDNILLKLAK 691
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 34/276 (12%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS 425
+F ++DEA+Q+ + PL S + VL GD QLP +V ++ + SLF+RL
Sbjct: 758 DFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMSESLFKRLE 815
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKI--------------------RDSSTVRK 465
+ L++QYRM+ I N Y K+ R S +
Sbjct: 816 RNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYA 875
Query: 466 RSYEKRFLHGPMY--GPYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDS 521
+ +L G + P F+N E+ N+ E +++ + KA
Sbjct: 876 DYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSP 935
Query: 522 KEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNN 581
+ IG+++PY Q+ I + L V V+V ++D +QG ++ LI++S VRSN
Sbjct: 936 SD---IGVIAPYRQQLRIISDLLARSSVG----MVEVNTVDKYQGRDKSLILVSFVRSNE 988
Query: 582 GGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTR 616
G++G L + +R+NVALTRA+H L +LG+ +L R
Sbjct: 989 DGTLGELLKDWRRLNVALTRAKHKLILLGSVSSLKR 1024
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87
LN Q QA+ L + D+ LI G PGTGKT T+ L+ IL F L+ + T+
Sbjct: 627 LNKPQRQAMKRVL--LSKDYT----LIVGMPGTGKTTTICALVRILSACGFSVLLTSYTH 680
Query: 88 VAIKELAARVVK 99
A+ + ++ K
Sbjct: 681 SAVDNILLKLAK 692
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 148/320 (46%), Gaps = 41/320 (12%)
Query: 334 DLLKSFC-----LKRASLF---LSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTI 383
D +K +C + RAS F ++T SS+ + + + + F + +DEA Q E E I
Sbjct: 841 DAIKPYCRDGEDIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLI 900
Query: 384 PLQL-SGIK-HAVLFGDECQLPAMVESKVSNEACFGRSLFERL----SYL---------- 427
PL L S I VL GD QL +++S+++ S+ ERL +YL
Sbjct: 901 PLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACG 960
Query: 428 GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYG-PYSF 483
Y+ L++ YR H ++ P+ FY ++ + + + + P G P F
Sbjct: 961 AYNPLLVTKLVKNYRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEKLPRKGFPLIF 1020
Query: 484 INVFGGR-EEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQE 542
V G E S + E VM+ L ++ IG+++PY QV E
Sbjct: 1021 HGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQV----E 1076
Query: 543 KLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGS------IGFLSNSKRVNV 596
K+ N +KV S++ FQG E +I+ISTVRSN +GFLSNSKR NV
Sbjct: 1077 KIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNV 1136
Query: 597 ALTRARHCLWILGNARTLTR 616
A+TR + L ILGN L R
Sbjct: 1137 AITRPKALLIILGNPHVLVR 1156
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 15/77 (19%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK 77
E F P LN++Q AV R + D + +++GPPGTGKT T+ + +LQ+
Sbjct: 741 EFFNP----VLNENQKLAVR---RILSGDCRPLPYILFGPPGTGKTVTI---IEAVLQVH 790
Query: 78 F-----RTLVCTPTNVA 89
+ R LVC P+N A
Sbjct: 791 YALPDSRILVCAPSNSA 807
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 142/322 (44%), Gaps = 42/322 (13%)
Query: 368 LVIDEAAQLKESESTIPLQ-LSGIKHA-------VLFGDECQLPAMVESKVSNEACFGRS 419
+ IDEA E ES + + L +K VL GD QL ++ S ++ + G S
Sbjct: 642 IFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYS 701
Query: 420 LFERLSYL---------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRS 467
L ERL GY ++ YR HP+I PN +YE +++ + V R
Sbjct: 702 LLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRE 761
Query: 468 YEKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL-LNLYKAWIDSKEK 524
R+ P G P F V G E E S N E + V L L L + K +
Sbjct: 762 RFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKAR 821
Query: 525 LS---IGIVSPYSAQVVAIQEKLGSKYVNSAGFA----VKVMSIDGFQGGEEDLIIISTV 577
LS +G++SPY QV I+ + G +KV S++ FQG E +I+ISTV
Sbjct: 822 LSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTV 881
Query: 578 RSNNGG-------SIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALV----H 626
RS+ ++GFL N KR NVA+TRA+ L I+GN L W+ +
Sbjct: 882 RSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPD-WKVFLEFCKE 940
Query: 627 DANARQCFFNADDDKDLGKAIL 648
+ C F A D G+ +L
Sbjct: 941 NGGYTGCPFPAKLDLQQGQNLL 962
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 167/364 (45%), Gaps = 62/364 (17%)
Query: 309 FVLRKLQSSFNELNLPSAVEKDL-LEDLLKSFC------LKRASLFLSTASSSYMLHSVA 361
++ R + SS N ++P+ V +D K + LK + ++T ++ L S
Sbjct: 567 YIYRIMASSANYKDVPADVRPCCNWDDSEKCYVYPSKKLLKPYRILITTLVTAGRLVSAN 626
Query: 362 MEPLNF--LVIDEAAQLKESESTIPLQLSGI------------KHAVLFGDECQLPAMVE 407
P F + IDE E ES + ++G+ VL GD QL +
Sbjct: 627 FPPGYFSHVFIDECGHAVEPESVV--AIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPR 684
Query: 408 SKVSNEACFGRSLFERL---------SYLGYSKHLLS---IQYRMHPSISCFPNSYFYEN 455
S ++ + G SL ERL S GY+ ++ YR H +I PN FY++
Sbjct: 685 SPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVTKLLWNYRSHKAILKVPNELFYDS 744
Query: 456 KIR--DSSTVRKRSYEKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL 511
+++ + S R++ + P G P F V G E E S N E+ VV++ L
Sbjct: 745 ELKAYEGSEPDVRNFYCTWEELPNRGVPIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYL 804
Query: 512 LNLYKAW-------IDSKEKLSIGIVSPYSAQVVAIQEKLGSK-----YVNSAGFAVKVM 559
L ++ I KE IGI+SPY QV I+ + SK + G +KV
Sbjct: 805 QKLLQSQGRRGCPTISPKE---IGIISPYRKQVEKIRLAITSKDPVLRALPDIG-QLKVG 860
Query: 560 SIDGFQGGEEDLIIISTVRS-------NNGGSIGFLSNSKRVNVALTRARHCLWILGNAR 612
S++ FQG E +I+ISTVRS + +GFL N KR+NVALTRA+ L ++GNA
Sbjct: 861 SVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAA 920
Query: 613 TLTR 616
L++
Sbjct: 921 VLSK 924
Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV--SMLLVILLQMKFRTLVCTPT 86
N+ Q QAV + M + LI+GPPGTGKT T+ ++ V R L C P+
Sbjct: 492 NEEQCQAVKHIVTGM---SRPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPS 548
Query: 87 NVAIKELAARVV 98
N A L R++
Sbjct: 549 NSAADLLCQRLL 560
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 149/331 (45%), Gaps = 53/331 (16%)
Query: 329 KDLLEDLLKSFC-----LKRASLF---LSTASSSYMLHSVAMEPLNF--LVIDEAAQLKE 378
++++ D +K +C + +AS F ++T SSS + + + + +F + +DEA Q E
Sbjct: 834 EEIVIDAVKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASE 893
Query: 379 SESTIPLQL----SGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERL---------- 424
E IPL L SG VL GD QL +++S+++ S ERL
Sbjct: 894 PECLIPLGLMSDISG--QIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDE 951
Query: 425 ---SYLGYSKHLLSIQ----YRMHPSISCFPNSYFYENKIR---DSSTVRKR-SYEKRFL 473
G LL + YR H ++ P+ FY ++ D + V +EK
Sbjct: 952 NAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKL-- 1009
Query: 474 HGPMYG-PYSFINVFGGR-EEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVS 531
P G P F V G E S N E V++ L + IG+++
Sbjct: 1010 --PKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVIT 1067
Query: 532 PYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGS------I 585
PY QV EK+ N +KV S++ FQG E +IIISTVRSN +
Sbjct: 1068 PYRKQV----EKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFL 1123
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLTR 616
GFLSNSKR NVA+TR + L +LGN L R
Sbjct: 1124 GFLSNSKRFNVAITRPKALLIVLGNPHVLVR 1154
Score = 40.0 bits (92), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 18 ETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK 77
E F P LN++Q AV R + D + +++GPPGTGKT T+ + +LQ+
Sbjct: 739 EFFNP----VLNENQKLAVK---RILSGDCRPLPYILFGPPGTGKTVTI---IEAVLQVH 788
Query: 78 F-----RTLVCTPTNVAIKELAARV 97
F R LVC P+N A + R+
Sbjct: 789 FALPDSRILVCAPSNSAADLVCLRL 813
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 130/264 (49%), Gaps = 24/264 (9%)
Query: 366 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLS 425
+F ++DEA+Q+ + PL S K VL GD QLP +V++ + + SLF+RL
Sbjct: 726 DFCIVDEASQISQPICLGPLFCS--KRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLE 783
Query: 426 YLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFIN 485
+ L++QYRM+ I N YE K+ S + + N
Sbjct: 784 QNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSEKVSNATA------------NLPN 831
Query: 486 VFGGREEFIEHSCRNMVEVSVVMK--ILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEK 543
+ + EF + S + EV K LN KA + IGI+SPY Q+ I +
Sbjct: 832 LKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPSD---IGIISPYRHQLKVITDL 888
Query: 544 LGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG-FLSNSKRVNVALTRAR 602
+ N V+V +ID +QG ++ +II+S VR++N ++G L + +R+NVA+TRA+
Sbjct: 889 MARLKENR----VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAITRAK 944
Query: 603 HCLWILGNARTLTRKKSVWEALVH 626
H L ++G +L R + + L H
Sbjct: 945 HKLIMVGCVPSLRRYPPLEKLLCH 968
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQ---------LIWGPPGTGKTKTVSMLLVILL 74
LSS L +AV S L+ + K ++ LI G PGTGKT T+ L+ IL
Sbjct: 576 LSSVLPPEAKEAVASILKGLNKPQKQAMKQVLLSRDYTLIVGMPGTGKTTTICALVRILS 635
Query: 75 QMKFRTLVCTPTNVAIKELAARVVK 99
F L+ + T+ A+ + ++ K
Sbjct: 636 ACGFSVLLTSFTHTAVDNILLKLAK 660
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 141/321 (43%), Gaps = 40/321 (12%)
Query: 368 LVIDEAAQLKESESTIPLQ-LSGIKHA-------VLFGDECQLPAMVESKVSNEACFGRS 419
+ IDEA E ES + + L +K VL GD QL ++ S ++ + G S
Sbjct: 643 IFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYS 702
Query: 420 LFERLSYL---------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRS 467
L ERL GY ++ YR HP+I PN +Y+ +++ + V R
Sbjct: 703 LLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDRE 762
Query: 468 YEKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLY-KAWIDSKEK 524
R+ P G P F V G E E S N E + V L L + K +
Sbjct: 763 RFCRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKAR 822
Query: 525 LS---IGIVSPYSAQVVAIQEKLGSKYVNSAGFA----VKVMSIDGFQGGEEDLIIISTV 577
LS +G++SPY QV I+ + G +KV S++ FQG E +I+ISTV
Sbjct: 823 LSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTV 882
Query: 578 RSNNGG-------SIGFLSNSKRVNVALTRARHCLWILGNARTLTRK---KSVWEALVHD 627
RS+ ++GFL N KR NVA+TRA+ L ++GN L K+ E +
Sbjct: 883 RSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKEN 942
Query: 628 ANARQCFFNADDDKDLGKAIL 648
C F A D G+ +L
Sbjct: 943 GGYTGCPFPAKLDLQQGQDLL 963
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 167/364 (45%), Gaps = 45/364 (12%)
Query: 299 LLHKRRSECHFVLRKLQSSFNELNLPSAVEKD--LLEDLLKSFC---LKRASLFLSTASS 353
L+ + H + R SS N+ ++P ++ + + E+++ C L + + T +
Sbjct: 598 LITSEHVDAHKIYRLYASSRNQKDIPKILKDNCNVDEEMIDFPCKEDLMSYKILICTLVT 657
Query: 354 SYMLHSVAMEPLNFL--VIDEAAQLKESESTIPLQLSGIKHA-----VLFGDECQLPAMV 406
+ L + +F +DEA ESE+ I ++G+ +A VL GD QL ++
Sbjct: 658 AGRLVTGGFSEDHFTHNFVDEAGHAVESETII--SVAGLLNAEKGQLVLAGDPKQLGPIL 715
Query: 407 ESKVSNEACFGRSLFERLSYLG-------------YSKHLLSIQYRMHPSISCFPNSYFY 453
S ++ SL ERL Y L+ + YR HP I PN FY
Sbjct: 716 RSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLI-MNYRSHPYILEVPNRLFY 774
Query: 454 ENKIRDSSTVRKRSYEKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVM--- 508
+ +++ + + + H P G P F V G E E S N+ E+++++
Sbjct: 775 DGELKACADEISSNQYCMWEHLPSKGFPVIFHGVPGKDERESNSPSFFNIYEINILVDYL 834
Query: 509 -KILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSK--YVNSAGF-AVKVMSIDGF 564
K+LL K I IGI++PY QV I+ + + + + G +KV S++ F
Sbjct: 835 KKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEF 894
Query: 565 QGGEEDLIIISTVRS-------NNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRK 617
QG E +I++STVRS + +IGFL N KR NVA+TRA+ L ++GN L R
Sbjct: 895 QGQERKVIMVSTVRSSVKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMIL-RT 953
Query: 618 KSVW 621
W
Sbjct: 954 DESW 957
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 141/322 (43%), Gaps = 42/322 (13%)
Query: 368 LVIDEAAQLKESESTIPLQ-LSGIKHA-------VLFGDECQLPAMVESKVSNEACFGRS 419
+ IDEA E ES + + L +K A VL GD QL ++ ++ + G S
Sbjct: 642 IFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYS 701
Query: 420 LFERLSYL---------GYSKHLLSI---QYRMHPSISCFPNSYFYENKIRDSSTVRKRS 467
L ERL GY+ ++ YR HP+I PN +Y+ +++ + V R
Sbjct: 702 LLERLLTFNALYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDRE 761
Query: 468 YEKRFLHGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLY-KAWIDSKEK 524
R+ P P F V G E E S N E + V L L + K +
Sbjct: 762 RFCRWEGLPRQDFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKAR 821
Query: 525 LS---IGIVSPYSAQVVAIQEKLGSKYVNSAGFA----VKVMSIDGFQGGEEDLIIISTV 577
LS +G++SPY QV I+ + G +KV S++ FQG E +I+ISTV
Sbjct: 822 LSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTV 881
Query: 578 RSNNGG-------SIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALV----H 626
RS+ ++GFL N KR NVA+TRA+ L ++GN L W+ +
Sbjct: 882 RSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKVFLEFCKE 940
Query: 627 DANARQCFFNADDDKDLGKAIL 648
+ C F A D G+ +L
Sbjct: 941 NGGYTGCPFPAKLDLQQGQNLL 962
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 53 LIWGPPGTGKTKTV--SMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKESVERDCR 110
+I+GPPGTGKT T+ ++ V+ K L C P+N L R+ + S+ R
Sbjct: 521 IIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYR--- 577
Query: 111 DALFFPLGDILLL 123
L P DI L+
Sbjct: 578 --LLAPSRDIHLV 588
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 143/280 (51%), Gaps = 18/280 (6%)
Query: 349 STASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVE 407
+T ++ Y +EP ++++EAA++ E+ TI +H +L GD QL P+
Sbjct: 985 TTGAAKYRQILQKVEP-RIVIVEEAAEVLEAH-TIATLSKACQHLILIGDHQQLRPSANV 1042
Query: 408 SKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRS 467
++ SLFERL + L+ Q+RM P I+ + Y++ S ++
Sbjct: 1043 YDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLK--- 1099
Query: 468 YEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKIL-LNLYKAWIDSKEKLS 526
YEK + G + + F +E S +N E V+++ L + ++ S+
Sbjct: 1100 YEK--IKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQ---- 1153
Query: 527 IGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSIG 586
I I++ Y+ Q+ +++ + +K AG V+V +D +QG E D+I++S VRSN G +G
Sbjct: 1154 ITILTTYTGQLFCLRKLMPAKTF--AG--VRVHVVDKYQGEENDIILLSLVRSNQEGKVG 1209
Query: 587 FLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
FL S R+ VAL+RA+ ++ +GN + L K +W ++H
Sbjct: 1210 FLQISNRICVALSRAKKGMYCIGNMQMLA-KVPLWSKIIH 1248
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 140/281 (49%), Gaps = 20/281 (7%)
Query: 349 STASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVE 407
+T ++ Y +EP ++++EAA++ E+ TI +H +L GD QL P+
Sbjct: 978 TTGAAKYRQILQQVEP-RIVIVEEAAEVLEAH-TIATLSKACQHLILIGDHQQLRPSANV 1035
Query: 408 SKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRS 467
++ SLFERL + L+ Q+RM P I+ + Y++ + + +V K
Sbjct: 1036 YDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQD-LENHPSVLKYE 1094
Query: 468 YEKRFLHGPMYGPYSFIN--VFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKL 525
K + ++F + G+ +H +VE+ + L + ++ S+
Sbjct: 1095 QIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYL-----LCQEYLPSQ--- 1146
Query: 526 SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSI 585
I I++ Y+ Q+ +++ + K AG +KV +D +QG E D+I++S VRSN G +
Sbjct: 1147 -ITILTTYTGQLFCLRKLMPVKTF--AG--IKVHVVDKYQGEENDIILLSLVRSNQEGKV 1201
Query: 586 GFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVH 626
GFL R+ VAL+RA+ ++ +GN + L K +W ++H
Sbjct: 1202 GFLQIPNRICVALSRAKKGMYCIGNMQMLA-KVPLWSRIIH 1241
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 145/321 (45%), Gaps = 50/321 (15%)
Query: 341 LKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLS-GIKHAVLFG 397
++R + + T S+S L + +EP F +++DEAAQ E E+ +PL L+ VL G
Sbjct: 755 VERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAG 814
Query: 398 DECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSISCFPNSYF 452
D QL V S+ + E SL +RL Y Y LL YR H +I + + F
Sbjct: 815 DHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPSEYPCRILLCENYRSHEAIINYTSDLF 873
Query: 453 YENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVVMKIL 511
YE K+ S K+ K F P +F G +E + N EV +++ +
Sbjct: 874 YEGKLMASG---KQPPHKDFY------PLTFFTARGEDVQEKNSTAYYNNAEVFEIVERV 924
Query: 512 LNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGE 568
+ K W S KL SIG+VSPY+ QV I+ +L K ++ V V + QG +
Sbjct: 925 EEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKKRMSE----VSVERVLNVQGKQ 980
Query: 569 EDLIIISTVR---------------------SNNGGSIGFLSNSKRVNVALTRARHCLWI 607
++ +STVR S GFLSN K +N A+TRA+ + +
Sbjct: 981 FRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAV 1040
Query: 608 LGNARTL---TRKKSVWEALV 625
+G+ L R + WE +
Sbjct: 1041 VGDPIALCSVGRCRKFWETFI 1061
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 143/303 (47%), Gaps = 41/303 (13%)
Query: 339 FCLKRASLFLSTASSSYML------HSVAMEPLNFLV--IDEAAQLKESESTIPLQLSGI 390
F KRA++ L A+ M + +E +N + I+EAA + E IP +
Sbjct: 671 FSNKRAAILLRGANVIGMTTTGLNKYRDILERINPKICFIEEAADVLEG-PIIPAVFPSL 729
Query: 391 KHAVLFGDECQLPAMVESKVSNEACFGRS--LFERLSYLGYSKHLLSIQYRMHPSISCFP 448
+ VL GD QL + + F S +FERL L++Q RMHP I
Sbjct: 730 EQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLV 789
Query: 449 NSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHS----------C 498
+S YE+ + D + Y P S + R F+ HS
Sbjct: 790 SS-VYED-LSDYEITK-------------YWP-SIPGMGEIRRFFLTHSRIEDNDGFASK 833
Query: 499 RNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKV 558
N+ E ++++ + L ++ ++ I ++ Y+AQ I E+L S+ +N +KV
Sbjct: 834 INLFEAQMLVQFAVYLINNGVEPQK---ITCLTFYAAQKDLI-ERLLSESLNREKHFIKV 889
Query: 559 MSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKK 618
++DG+QG E D++++S VR+N+ +GFLS+ RV V+L+RAR L+I GNA+ +
Sbjct: 890 ATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESN 949
Query: 619 SVW 621
+W
Sbjct: 950 PLW 952
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 182/413 (44%), Gaps = 83/413 (20%)
Query: 333 EDLLKSFCLKRASLFLSTASSSYMLHSVAMEPLNF--LVIDEAAQLKESESTIPLQLSGI 390
ED+LK + + T S+S L + +EP F +++DEAAQ E E+ +PL L+
Sbjct: 760 EDILKH------RVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLALATK 813
Query: 391 K-HAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKH-----LLSIQYRMHPSI 444
VL GD QL V S+ + E SL +RL Y Y LL YR H +I
Sbjct: 814 NTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRL-YEHYPAEFPCRILLCENYRSHEAI 872
Query: 445 SCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEH----SCRN 500
+ + FYE K+ S K+ K F P +F F R E ++ + N
Sbjct: 873 INYTSELFYEGKLMASG---KQPAHKDFY------PLTF---FTARGEDVQEKNSTAFYN 920
Query: 501 MVEVSVVMKILLNLYKAWIDSKEKL---SIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVK 557
EV V++ + L + W + KL SIG+V+PY+ QV I+ +L K ++ V
Sbjct: 921 NAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSD----VN 976
Query: 558 VMSIDGFQGGEEDLIIISTVR---------------------SNNGGSIGFLSNSKRVNV 596
V + QG + ++ +STVR S GFLSN K +N
Sbjct: 977 VERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNT 1036
Query: 597 ALTRARHCLWILGNARTL---TRKKSVWE---ALVHDANARQCFFNADDDKDLGKAILAV 650
A+TRA+ + ++G+ L R + WE AL H+ ++ G +
Sbjct: 1037 AITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLH-----------GITFEQI 1085
Query: 651 KKELDELD----ELLNPESRLFRSQRWKVNFSENFLKSFRKLTSDPTKKSVIH 699
K +L+ L+ +LNP + F + ++ S N S R+ S P KS+ H
Sbjct: 1086 KAQLEALELKKTYVLNPLAPEFIPRALRLQHSGN---SSRQQQSPPKVKSLYH 1135
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 16 WNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLV-ILL 74
W+E P L N Q +AVL+ + LI GP GTGKT T++ IL
Sbjct: 634 WDEQLDPRL----NAKQKEAVLAITTPLSIQLPPV--LIIGPYGTGKTFTLAQAAKHILQ 687
Query: 75 QMKFRTLVCTPTNVA 89
Q + R L+CT +N A
Sbjct: 688 QQETRILICTHSNSA 702
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 25/310 (8%)
Query: 339 FCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAV--LF 396
F + + L + TA S+ L ++ + + + IDEA+QL +E T+ L +A L
Sbjct: 1178 FMIYKPDLVMVTADSAKGLLNI-LRDVCAVQIDEASQL--AECTLLGLLKSFNNASFGLI 1234
Query: 397 GDECQLPAMVESKVSN---EACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFY 453
GD QLP E + + G ++ + + L YR HP + + FY
Sbjct: 1235 GDIHQLPPYCEEGLEGKLKDFGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLSELFY 1294
Query: 454 ENKIRDSSTVRKRS--YEKR--FLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMK 509
+ + + RS KR F P + P F+N G + + S N E S+V +
Sbjct: 1295 DGALVSGVSELARSDFMTKRDDFWPNPKF-PMMFVNNTGASTK-MGTSTSNSSEKSIVGE 1352
Query: 510 ILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEE 569
I+ NL + IG++S YSAQ + E L G VK ++D FQG E+
Sbjct: 1353 IVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHL-------RGSGVKCGTVDAFQGSEK 1405
Query: 570 DLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDAN 629
++II+ S N F+ S R+NVA++RA+ I+G+ L R+ + W +V+
Sbjct: 1406 EIIIMC---STNERISDFMQLSNRLNVAMSRAKQVTIIIGHLDGL-RRANYWSTIVNKIE 1461
Query: 630 ARQCFFNADD 639
NA+D
Sbjct: 1462 QNGNLVNAND 1471
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 31/228 (13%)
Query: 413 EACFGRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKI-----RDSSTVRKRS 467
E SLF+RL + L++QYRM+ I N YE ++ R S+ V K
Sbjct: 798 ELGMSESLFKRLERNQEAVVQLTVQYRMNSQIMALSNKLVYEGRLECASDRVSNAVVKLP 857
Query: 468 YEKRFL--------HGPMY--------GPYSFINVFGGREEFIEHSCRNMVEVSVVMKIL 511
+ K L M+ P F+N + +E + + + K++
Sbjct: 858 HIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNT--EKIPALETEEKGGISNWIEAKLV 915
Query: 512 LNLYKAWIDSKEKLS-IGIVSPYSAQVVAIQEKLGSKYVNS-AGFAVKVMSIDGFQGGEE 569
L K ++ + + S IGI++PY Q+ I S Y NS + AV+V ++D +QG ++
Sbjct: 916 FCLTKLFLKAGCRPSDIGIIAPYRQQLKVI-----SNYFNSLSASAVEVNTVDKYQGRDK 970
Query: 570 DLIIISTVRSNNGGSIG-FLSNSKRVNVALTRARHCLWILGNARTLTR 616
+II+S VRSN G +G L + +R+NVALTRA+H L +LG TL+R
Sbjct: 971 SVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLSR 1018
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,375,648
Number of Sequences: 539616
Number of extensions: 15524269
Number of successful extensions: 51024
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 50604
Number of HSP's gapped (non-prelim): 288
length of query: 1044
length of database: 191,569,459
effective HSP length: 128
effective length of query: 916
effective length of database: 122,498,611
effective search space: 112208727676
effective search space used: 112208727676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)