Query 041971
Match_columns 1044
No_of_seqs 368 out of 2789
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 21:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 2.3E-69 7.7E-74 666.8 35.1 440 25-638 187-638 (646)
2 2gk6_A Regulator of nonsense t 100.0 4E-61 1.4E-65 589.8 26.7 295 337-638 313-612 (624)
3 2wjy_A Regulator of nonsense t 100.0 4.2E-60 1.4E-64 590.0 32.4 295 337-638 489-788 (800)
4 2xzl_A ATP-dependent helicase 100.0 5.2E-60 1.8E-64 590.1 28.8 429 23-638 356-790 (802)
5 3e1s_A Exodeoxyribonuclease V, 99.9 2.1E-27 7.3E-32 286.6 14.8 200 364-615 279-545 (574)
6 3lfu_A DNA helicase II; SF1 he 99.9 1.4E-24 4.6E-29 268.4 28.1 150 364-542 213-365 (647)
7 3upu_A ATP-dependent DNA helic 99.9 4.9E-25 1.7E-29 260.8 16.0 85 11-97 9-94 (459)
8 1pjr_A PCRA; DNA repair, DNA r 99.9 7.3E-23 2.5E-27 255.1 21.0 153 364-544 216-371 (724)
9 1w36_D RECD, exodeoxyribonucle 99.9 4.4E-23 1.5E-27 251.4 18.5 66 29-101 151-220 (608)
10 1uaa_A REP helicase, protein ( 99.9 1.6E-22 5.6E-27 250.6 18.8 146 363-537 206-355 (673)
11 3vkw_A Replicase large subunit 99.8 4.8E-20 1.7E-24 211.9 14.5 199 364-629 234-434 (446)
12 3u4q_A ATP-dependent helicase/ 99.8 2E-19 7E-24 235.8 17.8 72 23-103 6-83 (1232)
13 1w36_B RECB, exodeoxyribonucle 99.6 1.6E-14 5.5E-19 188.9 30.0 172 364-545 377-572 (1180)
14 3dmn_A Putative DNA helicase; 99.3 2.5E-12 8.6E-17 131.3 8.9 144 435-611 2-154 (174)
15 3u4q_B ATP-dependent helicase/ 98.9 1.4E-08 4.7E-13 133.2 20.1 153 366-547 203-366 (1166)
16 2fz4_A DNA repair protein RAD2 98.4 1.9E-06 6.6E-11 92.1 13.9 68 22-99 88-155 (237)
17 2fwr_A DNA repair protein RAD2 98.0 2.4E-05 8.1E-10 92.2 12.9 67 23-99 89-155 (472)
18 3b6e_A Interferon-induced heli 97.9 1.9E-05 6.3E-10 82.3 8.6 75 19-100 25-106 (216)
19 1rif_A DAR protein, DNA helica 97.8 4E-05 1.4E-09 83.9 9.7 68 26-100 112-180 (282)
20 2gxq_A Heat resistant RNA depe 97.8 5.1E-05 1.7E-09 78.5 9.5 70 25-101 21-96 (207)
21 2pl3_A Probable ATP-dependent 97.7 0.00013 4.3E-09 77.5 10.0 70 25-101 45-121 (236)
22 1qde_A EIF4A, translation init 97.6 0.00012 4.3E-09 76.7 9.3 69 26-101 35-106 (224)
23 1hv8_A Putative ATP-dependent 97.6 0.00017 5.7E-09 81.2 10.1 70 26-101 27-98 (367)
24 1t6n_A Probable ATP-dependent 97.6 0.00016 5.5E-09 75.7 9.3 69 26-101 35-106 (220)
25 1q0u_A Bstdead; DEAD protein, 97.6 0.00015 5.3E-09 75.9 9.1 71 25-102 24-97 (219)
26 3bor_A Human initiation factor 97.6 0.0001 3.6E-09 78.3 7.9 69 26-101 51-122 (237)
27 1vec_A ATP-dependent RNA helic 97.6 0.00016 5.3E-09 74.8 8.9 69 26-101 24-95 (206)
28 3iuy_A Probable ATP-dependent 97.6 0.00022 7.5E-09 75.2 10.2 68 26-100 41-117 (228)
29 3dkp_A Probable ATP-dependent 97.5 0.00027 9.2E-09 75.3 10.0 70 25-101 49-122 (245)
30 3fe2_A Probable ATP-dependent 97.5 0.00045 1.5E-08 73.5 11.0 72 25-103 49-128 (242)
31 3ly5_A ATP-dependent RNA helic 97.4 0.00025 8.5E-09 76.7 8.6 69 27-102 76-151 (262)
32 2oca_A DAR protein, ATP-depend 97.4 0.00024 8.2E-09 84.4 9.2 69 25-100 111-180 (510)
33 3oiy_A Reverse gyrase helicase 97.4 0.00021 7.3E-09 82.4 8.5 69 25-100 19-87 (414)
34 3ber_A Probable ATP-dependent 97.4 0.00041 1.4E-08 74.4 10.0 71 25-102 63-136 (249)
35 1wrb_A DJVLGB; RNA helicase, D 97.4 0.0005 1.7E-08 73.7 10.5 70 25-101 43-124 (253)
36 2z0m_A 337AA long hypothetical 97.4 0.00039 1.3E-08 77.3 10.0 66 26-101 15-80 (337)
37 1s2m_A Putative ATP-dependent 97.3 0.00041 1.4E-08 79.4 9.5 69 26-101 42-113 (400)
38 3ec2_A DNA replication protein 97.3 0.0004 1.4E-08 70.3 8.0 56 29-84 16-74 (180)
39 2oxc_A Probable ATP-dependent 97.3 0.00056 1.9E-08 72.2 9.2 69 26-101 45-116 (230)
40 2w58_A DNAI, primosome compone 97.2 0.00045 1.5E-08 71.2 7.7 56 29-84 31-89 (202)
41 3pey_A ATP-dependent RNA helic 97.2 0.0006 2.1E-08 77.5 9.2 72 25-101 25-99 (395)
42 3tbk_A RIG-I helicase domain; 97.2 0.00092 3.1E-08 79.8 11.0 72 25-103 2-78 (555)
43 3llm_A ATP-dependent RNA helic 97.2 0.00069 2.4E-08 71.9 8.5 69 25-100 59-132 (235)
44 1gm5_A RECG; helicase, replica 97.2 0.00038 1.3E-08 86.5 7.2 87 15-102 356-442 (780)
45 1xti_A Probable ATP-dependent 97.2 0.00068 2.3E-08 77.1 8.7 69 26-101 29-100 (391)
46 2j0s_A ATP-dependent RNA helic 97.1 0.00069 2.4E-08 77.8 8.7 69 26-101 58-129 (410)
47 1fuu_A Yeast initiation factor 97.1 0.00069 2.4E-08 77.1 8.3 69 26-101 42-113 (394)
48 4a2p_A RIG-I, retinoic acid in 97.1 0.0011 3.7E-08 79.3 10.3 73 24-103 4-81 (556)
49 3eiq_A Eukaryotic initiation f 97.1 0.00071 2.4E-08 77.6 8.4 70 25-101 60-132 (414)
50 2xgj_A ATP-dependent RNA helic 97.1 0.0015 5.1E-08 83.8 11.9 74 22-102 81-154 (1010)
51 1wp9_A ATP-dependent RNA helic 97.1 0.00063 2.2E-08 79.2 7.8 71 23-101 5-76 (494)
52 4a4z_A Antiviral helicase SKI2 97.1 0.0008 2.7E-08 86.2 8.8 74 21-101 33-106 (997)
53 3l9o_A ATP-dependent RNA helic 97.0 0.0014 4.9E-08 84.7 10.4 74 22-102 179-252 (1108)
54 3fht_A ATP-dependent RNA helic 97.0 0.0014 4.7E-08 75.1 9.3 72 25-101 45-119 (412)
55 2va8_A SSO2462, SKI2-type heli 96.9 0.00094 3.2E-08 82.9 7.9 67 26-98 29-96 (715)
56 3te6_A Regulatory protein SIR3 96.9 0.00059 2E-08 75.7 5.4 46 30-75 26-71 (318)
57 2i4i_A ATP-dependent RNA helic 96.9 0.002 7E-08 73.9 9.9 70 25-101 35-125 (417)
58 3lfu_A DNA helicase II; SF1 he 96.9 0.0017 5.7E-08 79.6 9.2 68 873-971 9-77 (647)
59 2p6r_A Afuhel308 helicase; pro 96.8 0.00071 2.4E-08 83.8 5.2 66 26-98 24-89 (702)
60 2eyq_A TRCF, transcription-rep 96.8 0.002 6.8E-08 83.8 9.2 81 20-101 596-676 (1151)
61 2qgz_A Helicase loader, putati 96.8 0.002 6.8E-08 71.4 7.9 54 31-84 132-188 (308)
62 3h1t_A Type I site-specific re 96.8 0.0016 5.4E-08 78.9 7.7 69 24-94 175-252 (590)
63 3bos_A Putative DNA replicatio 96.8 0.0022 7.6E-08 67.3 7.9 53 29-85 36-88 (242)
64 3i5x_A ATP-dependent RNA helic 96.8 0.0027 9.3E-08 76.3 9.6 73 25-102 92-171 (563)
65 4ddu_A Reverse gyrase; topoiso 96.7 0.002 6.7E-08 83.4 8.4 70 24-100 75-144 (1104)
66 1z3i_X Similar to RAD54-like; 96.7 0.015 5.2E-07 71.0 15.9 76 25-101 53-137 (644)
67 3sqw_A ATP-dependent RNA helic 96.7 0.0031 1.1E-07 76.1 9.6 72 26-102 42-120 (579)
68 4a2q_A RIG-I, retinoic acid in 96.7 0.0038 1.3E-07 78.4 10.4 71 25-102 246-321 (797)
69 2db3_A ATP-dependent RNA helic 96.7 0.0045 1.5E-07 71.9 10.2 70 25-101 76-153 (434)
70 1l8q_A Chromosomal replication 96.6 0.0027 9.1E-08 70.7 7.9 38 49-86 37-74 (324)
71 2zj8_A DNA helicase, putative 96.6 0.0011 3.8E-08 82.4 5.1 67 26-98 22-89 (720)
72 4gl2_A Interferon-induced heli 96.6 0.0012 4.2E-08 81.5 5.5 73 23-102 3-82 (699)
73 3fmp_B ATP-dependent RNA helic 96.6 0.0027 9.3E-08 74.6 7.8 70 27-101 114-186 (479)
74 1jbk_A CLPB protein; beta barr 96.6 0.0034 1.1E-07 63.1 7.5 52 29-84 27-85 (195)
75 3fho_A ATP-dependent RNA helic 96.5 0.0013 4.6E-08 78.1 4.7 70 27-101 141-213 (508)
76 3fmo_B ATP-dependent RNA helic 96.5 0.0048 1.6E-07 68.0 8.7 72 25-101 112-186 (300)
77 2orw_A Thymidine kinase; TMTK, 96.5 0.0024 8.1E-08 65.2 5.5 38 49-86 3-40 (184)
78 4a2w_A RIG-I, retinoic acid in 96.4 0.0045 1.5E-07 79.0 9.0 72 24-102 245-321 (936)
79 2ykg_A Probable ATP-dependent 96.4 0.0058 2E-07 75.4 9.6 70 25-101 11-85 (696)
80 2p65_A Hypothetical protein PF 96.4 0.0038 1.3E-07 62.5 6.6 51 30-84 28-85 (187)
81 3u61_B DNA polymerase accessor 96.4 0.0027 9.3E-08 70.5 5.7 104 12-129 12-117 (324)
82 2zpa_A Uncharacterized protein 96.4 0.0025 8.7E-08 76.9 5.6 62 26-95 174-235 (671)
83 1gku_B Reverse gyrase, TOP-RG; 96.3 0.0027 9.2E-08 82.0 6.2 71 24-102 54-124 (1054)
84 2dr3_A UPF0273 protein PH0284; 96.3 0.004 1.4E-07 65.9 6.5 50 48-98 22-71 (247)
85 2chg_A Replication factor C sm 96.3 0.0036 1.2E-07 64.5 6.1 45 29-77 22-66 (226)
86 2qby_B CDC6 homolog 3, cell di 96.3 0.0067 2.3E-07 68.8 8.6 58 27-84 23-88 (384)
87 2b8t_A Thymidine kinase; deoxy 96.3 0.0032 1.1E-07 66.2 5.4 38 48-85 11-48 (223)
88 2xau_A PRE-mRNA-splicing facto 96.3 0.0054 1.8E-07 76.5 8.3 67 29-101 95-164 (773)
89 1uaa_A REP helicase, protein ( 96.1 0.0048 1.6E-07 76.0 6.6 68 873-971 2-70 (673)
90 3dm5_A SRP54, signal recogniti 96.1 0.0059 2E-07 70.5 6.8 60 25-84 66-135 (443)
91 3t15_A Ribulose bisphosphate c 96.1 0.0039 1.3E-07 68.5 4.8 35 47-84 34-68 (293)
92 2z4s_A Chromosomal replication 96.1 0.0063 2.2E-07 70.8 6.9 56 31-86 112-169 (440)
93 3kl4_A SRP54, signal recogniti 96.0 0.0069 2.4E-07 69.9 6.9 60 25-84 62-132 (433)
94 3dmq_A RNA polymerase-associat 96.0 0.012 4E-07 75.5 9.6 72 23-100 149-222 (968)
95 2r2a_A Uncharacterized protein 96.0 0.0032 1.1E-07 65.0 3.5 25 50-74 6-30 (199)
96 2v1u_A Cell division control p 96.0 0.0078 2.7E-07 68.1 7.0 48 29-76 24-71 (387)
97 1tue_A Replication protein E1; 96.0 0.0032 1.1E-07 64.8 3.2 23 51-73 60-82 (212)
98 1iqp_A RFCS; clamp loader, ext 96.0 0.0094 3.2E-07 65.8 7.3 60 13-76 12-73 (327)
99 1fnn_A CDC6P, cell division co 96.0 0.0094 3.2E-07 67.6 7.5 57 28-84 21-80 (389)
100 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.012 4.1E-07 62.8 7.7 53 29-84 11-71 (262)
101 1pjr_A PCRA; DNA repair, DNA r 95.9 0.011 3.6E-07 73.4 8.1 69 873-972 11-80 (724)
102 3n70_A Transport activator; si 95.9 0.0037 1.3E-07 60.9 3.1 31 49-79 24-54 (145)
103 3bh0_A DNAB-like replicative h 95.9 0.0087 3E-07 66.4 6.6 53 47-100 66-118 (315)
104 1vec_A ATP-dependent RNA helic 95.8 0.033 1.1E-06 57.0 10.5 83 851-973 10-96 (206)
105 2r8r_A Sensor protein; KDPD, P 95.8 0.0072 2.5E-07 63.3 5.2 35 51-85 8-42 (228)
106 3iuy_A Probable ATP-dependent 95.8 0.024 8.2E-07 59.3 9.4 88 850-971 26-117 (228)
107 2kjq_A DNAA-related protein; s 95.8 0.0066 2.3E-07 59.5 4.6 51 27-85 22-72 (149)
108 1ofh_A ATP-dependent HSL prote 95.8 0.0075 2.6E-07 66.1 5.6 33 48-83 49-81 (310)
109 1njg_A DNA polymerase III subu 95.8 0.011 3.7E-07 61.6 6.6 59 13-74 10-70 (250)
110 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0085 2.9E-07 62.5 5.7 49 48-97 22-70 (235)
111 3syl_A Protein CBBX; photosynt 95.8 0.0087 3E-07 65.7 5.9 38 48-85 66-107 (309)
112 4fcw_A Chaperone protein CLPB; 95.7 0.0073 2.5E-07 66.4 5.2 35 50-84 48-82 (311)
113 2z83_A Helicase/nucleoside tri 95.7 0.0066 2.2E-07 71.1 5.0 51 48-98 20-71 (459)
114 2chq_A Replication factor C sm 95.7 0.0079 2.7E-07 66.1 5.3 59 14-76 5-65 (319)
115 4a15_A XPD helicase, ATP-depen 95.7 0.025 8.7E-07 68.6 10.1 73 27-102 3-76 (620)
116 1sxj_C Activator 1 40 kDa subu 95.7 0.009 3.1E-07 66.9 5.7 61 13-77 12-74 (340)
117 3h4m_A Proteasome-activating n 95.7 0.008 2.7E-07 65.3 5.2 45 28-72 21-74 (285)
118 1a5t_A Delta prime, HOLB; zinc 95.7 0.02 6.9E-07 63.9 8.5 47 30-76 5-51 (334)
119 3uk6_A RUVB-like 2; hexameric 95.7 0.011 3.7E-07 66.7 6.4 46 29-74 49-95 (368)
120 1sxj_A Activator 1 95 kDa subu 95.7 0.0091 3.1E-07 71.0 6.0 71 12-85 25-110 (516)
121 2v6i_A RNA helicase; membrane, 95.6 0.0083 2.8E-07 69.6 5.4 50 49-98 2-52 (431)
122 3llm_A ATP-dependent RNA helic 95.6 0.019 6.4E-07 60.7 7.6 71 871-971 59-132 (235)
123 2gxq_A Heat resistant RNA depe 95.6 0.059 2E-06 55.1 11.1 86 851-972 8-96 (207)
124 1xx6_A Thymidine kinase; NESG, 95.6 0.012 4E-07 60.3 5.6 38 49-86 8-45 (191)
125 1sxj_D Activator 1 41 kDa subu 95.5 0.0048 1.7E-07 69.1 2.8 57 14-74 25-83 (353)
126 1jr3_A DNA polymerase III subu 95.5 0.017 5.7E-07 65.2 7.2 56 15-73 5-62 (373)
127 2v3c_C SRP54, signal recogniti 95.5 0.016 5.4E-07 67.1 7.1 62 24-85 63-135 (432)
128 3co5_A Putative two-component 95.5 0.0055 1.9E-07 59.5 2.7 23 49-71 27-49 (143)
129 2jlq_A Serine protease subunit 95.5 0.0094 3.2E-07 69.6 5.1 49 49-97 19-68 (451)
130 3hr8_A Protein RECA; alpha and 95.5 0.0091 3.1E-07 67.2 4.7 41 48-88 60-100 (356)
131 3dkp_A Probable ATP-dependent 95.5 0.049 1.7E-06 57.6 10.3 86 848-972 33-122 (245)
132 2qby_A CDC6 homolog 1, cell di 95.4 0.013 4.4E-07 66.2 6.0 55 29-83 25-82 (386)
133 1sxj_E Activator 1 40 kDa subu 95.4 0.0084 2.9E-07 67.3 4.3 60 15-76 3-63 (354)
134 1t6n_A Probable ATP-dependent 95.4 0.061 2.1E-06 55.7 10.7 84 850-973 20-107 (220)
135 1vma_A Cell division protein F 95.4 0.013 4.5E-07 64.6 5.5 37 48-84 103-139 (306)
136 2gno_A DNA polymerase III, gam 95.4 0.035 1.2E-06 61.2 8.9 73 49-130 18-95 (305)
137 2zts_A Putative uncharacterize 95.3 0.015 5.2E-07 61.4 5.7 51 47-98 28-79 (251)
138 1yks_A Genome polyprotein [con 95.3 0.011 3.7E-07 68.9 4.9 50 49-98 8-58 (440)
139 3ly5_A ATP-dependent RNA helic 95.3 0.018 6E-07 62.0 6.3 95 842-972 48-150 (262)
140 3b6e_A Interferon-induced heli 95.3 0.031 1E-06 57.5 7.9 76 869-973 29-108 (216)
141 2bjv_A PSP operon transcriptio 95.3 0.018 6.3E-07 61.8 6.3 36 49-84 29-64 (265)
142 3bor_A Human initiation factor 95.3 0.05 1.7E-06 57.3 9.6 83 850-972 36-122 (237)
143 2v1x_A ATP-dependent DNA helic 95.3 0.024 8E-07 68.5 7.8 66 25-100 42-107 (591)
144 3io5_A Recombination and repai 95.3 0.0086 2.9E-07 65.8 3.5 41 48-88 27-69 (333)
145 1qde_A EIF4A, translation init 95.2 0.075 2.6E-06 55.1 10.7 82 851-972 21-106 (224)
146 4a1f_A DNAB helicase, replicat 95.2 0.02 6.8E-07 64.0 6.3 55 46-101 43-97 (338)
147 1d2n_A N-ethylmaleimide-sensit 95.2 0.025 8.6E-07 61.0 7.0 26 47-72 62-87 (272)
148 1z63_A Helicase of the SNF2/RA 95.1 0.033 1.1E-06 65.7 8.4 76 21-100 31-108 (500)
149 2vl7_A XPD; helicase, unknown 95.1 0.029 9.8E-07 67.1 7.8 68 26-99 6-73 (540)
150 2px0_A Flagellar biosynthesis 95.1 0.02 6.7E-07 62.9 5.8 38 48-85 104-142 (296)
151 3pvs_A Replication-associated 95.1 0.024 8.2E-07 66.0 6.8 46 50-98 51-96 (447)
152 2oxc_A Probable ATP-dependent 95.1 0.091 3.1E-06 55.0 10.7 82 851-972 31-116 (230)
153 2w00_A HSDR, R.ECOR124I; ATP-b 95.1 0.019 6.4E-07 73.5 6.3 74 26-99 270-352 (1038)
154 1u94_A RECA protein, recombina 95.1 0.019 6.5E-07 64.7 5.6 39 48-86 62-100 (356)
155 1sxj_B Activator 1 37 kDa subu 95.0 0.012 4.2E-07 64.7 4.0 60 13-76 8-69 (323)
156 2zr9_A Protein RECA, recombina 95.0 0.019 6.6E-07 64.5 5.6 40 48-87 60-99 (349)
157 2yvu_A Probable adenylyl-sulfa 95.0 0.024 8E-07 57.4 5.8 39 45-83 9-47 (186)
158 1cr0_A DNA primase/helicase; R 95.0 0.031 1.1E-06 61.1 7.2 51 47-98 33-84 (296)
159 2r44_A Uncharacterized protein 95.0 0.016 5.5E-07 64.5 4.9 38 30-73 33-70 (331)
160 1xjc_A MOBB protein homolog; s 95.0 0.022 7.4E-07 57.1 5.3 40 50-89 5-44 (169)
161 4b4t_K 26S protease regulatory 95.0 0.011 3.9E-07 68.0 3.5 34 49-85 206-239 (428)
162 4b4t_M 26S protease regulatory 94.9 0.011 3.9E-07 68.0 3.5 34 49-85 215-248 (434)
163 1zu4_A FTSY; GTPase, signal re 94.9 0.021 7.2E-07 63.4 5.5 37 48-84 104-140 (320)
164 1nlf_A Regulatory protein REPA 94.9 0.032 1.1E-06 60.5 6.8 51 48-99 29-89 (279)
165 3fe2_A Probable ATP-dependent 94.9 0.078 2.7E-06 56.0 9.7 89 851-974 36-128 (242)
166 3ber_A Probable ATP-dependent 94.9 0.095 3.3E-06 55.7 10.3 84 850-973 49-136 (249)
167 4f92_B U5 small nuclear ribonu 94.9 0.039 1.3E-06 74.3 8.8 72 25-102 924-997 (1724)
168 4b4t_J 26S protease regulatory 94.8 0.013 4.3E-07 66.8 3.4 35 48-85 181-215 (405)
169 3u4q_A ATP-dependent helicase/ 94.8 0.042 1.4E-06 72.2 8.8 70 872-970 9-79 (1232)
170 1oyw_A RECQ helicase, ATP-depe 94.8 0.029 1E-06 66.7 6.7 65 26-100 24-88 (523)
171 2wv9_A Flavivirin protease NS2 94.8 0.0085 2.9E-07 73.4 2.1 71 27-98 215-291 (673)
172 3b9p_A CG5977-PA, isoform A; A 94.8 0.014 4.7E-07 63.9 3.6 45 29-73 26-78 (297)
173 3cf0_A Transitional endoplasmi 94.8 0.014 4.7E-07 64.3 3.6 26 48-73 48-73 (301)
174 4b4t_L 26S protease subunit RP 94.8 0.013 4.5E-07 67.6 3.5 53 30-85 187-248 (437)
175 2j37_W Signal recognition part 94.8 0.027 9.2E-07 66.3 6.1 45 49-93 101-148 (504)
176 3eie_A Vacuolar protein sortin 94.7 0.016 5.6E-07 64.3 4.0 53 29-84 23-83 (322)
177 1p9r_A General secretion pathw 94.7 0.032 1.1E-06 64.2 6.6 54 25-83 148-201 (418)
178 1xp8_A RECA protein, recombina 94.7 0.024 8.2E-07 64.1 5.4 41 47-87 72-112 (366)
179 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.014 4.9E-07 64.8 3.5 25 49-73 45-69 (322)
180 2r6a_A DNAB helicase, replicat 94.7 0.033 1.1E-06 65.1 6.7 52 47-99 201-253 (454)
181 1in4_A RUVB, holliday junction 94.7 0.025 8.5E-07 63.2 5.4 44 30-73 31-75 (334)
182 1u0j_A DNA replication protein 94.7 0.035 1.2E-06 59.6 6.2 48 24-72 80-127 (267)
183 3bgw_A DNAB-like replicative h 94.7 0.026 8.9E-07 65.6 5.7 52 47-99 195-246 (444)
184 1q57_A DNA primase/helicase; d 94.7 0.026 9E-07 66.8 5.7 53 47-100 240-293 (503)
185 2c9o_A RUVB-like 1; hexameric 94.6 0.033 1.1E-06 65.0 6.4 55 29-84 42-97 (456)
186 3pfi_A Holliday junction ATP-d 94.6 0.029 9.8E-07 62.5 5.6 61 12-72 15-78 (338)
187 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.015 5.2E-07 64.1 3.2 33 49-84 123-155 (331)
188 2xxa_A Signal recognition part 94.6 0.029 9.8E-07 65.0 5.7 37 49-85 100-137 (433)
189 2z0h_A DTMP kinase, thymidylat 94.6 0.031 1E-06 56.7 5.3 33 51-83 2-34 (197)
190 3crv_A XPD/RAD3 related DNA he 94.6 0.052 1.8E-06 65.0 8.1 68 26-99 2-69 (551)
191 1w5s_A Origin recognition comp 94.5 0.03 1E-06 63.9 5.7 46 30-75 28-78 (412)
192 2whx_A Serine protease/ntpase/ 94.5 0.024 8.2E-07 68.8 5.1 50 49-98 186-236 (618)
193 3pxg_A Negative regulator of g 94.5 0.023 8E-07 66.6 4.8 41 31-75 187-227 (468)
194 1g5t_A COB(I)alamin adenosyltr 94.5 0.036 1.2E-06 56.6 5.6 39 49-87 28-66 (196)
195 1lv7_A FTSH; alpha/beta domain 94.5 0.022 7.5E-07 60.8 4.2 25 49-73 45-69 (257)
196 2cvh_A DNA repair and recombin 94.5 0.025 8.6E-07 58.5 4.5 36 47-85 18-53 (220)
197 1q0u_A Bstdead; DEAD protein, 94.5 0.07 2.4E-06 55.3 7.9 84 851-973 11-97 (219)
198 1nks_A Adenylate kinase; therm 94.4 0.034 1.2E-06 56.0 5.3 33 51-83 3-35 (194)
199 1c4o_A DNA nucleotide excision 94.4 0.083 2.8E-06 64.6 9.6 73 25-102 6-78 (664)
200 3p32_A Probable GTPase RV1496/ 94.4 0.061 2.1E-06 60.6 7.8 40 47-86 77-116 (355)
201 4b4t_I 26S protease regulatory 94.4 0.019 6.4E-07 65.7 3.5 52 30-84 188-248 (437)
202 2x8a_A Nuclear valosin-contain 94.4 0.024 8.2E-07 61.5 4.3 21 52-72 47-67 (274)
203 3hws_A ATP-dependent CLP prote 94.4 0.025 8.6E-07 63.9 4.5 34 48-84 50-83 (363)
204 2q6t_A DNAB replication FORK h 94.3 0.046 1.6E-06 63.6 6.7 52 47-99 198-250 (444)
205 3bfv_A CAPA1, CAPB2, membrane 94.3 0.079 2.7E-06 57.3 8.0 38 47-84 80-118 (271)
206 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.04 1.4E-06 59.1 5.6 36 49-84 4-39 (260)
207 1j8m_F SRP54, signal recogniti 94.2 0.043 1.5E-06 60.2 5.9 44 49-92 98-144 (297)
208 2qp9_X Vacuolar protein sortin 94.2 0.025 8.5E-07 63.8 4.0 32 49-83 84-115 (355)
209 1hqc_A RUVB; extended AAA-ATPa 94.2 0.03 1E-06 61.7 4.7 45 29-73 17-62 (324)
210 3fmo_B ATP-dependent RNA helic 94.2 0.11 3.7E-06 57.0 9.1 85 851-974 99-188 (300)
211 2j9r_A Thymidine kinase; TK1, 94.2 0.05 1.7E-06 56.4 5.8 39 49-87 28-66 (214)
212 1s2m_A Putative ATP-dependent 94.1 0.14 4.8E-06 58.0 10.2 83 851-972 28-113 (400)
213 1rz3_A Hypothetical protein rb 94.1 0.093 3.2E-06 53.8 7.9 52 32-84 6-57 (201)
214 3fht_A ATP-dependent RNA helic 94.1 0.53 1.8E-05 53.2 15.1 86 850-974 31-121 (412)
215 2r62_A Cell division protease 94.1 0.015 5E-07 62.6 1.8 23 50-72 45-67 (268)
216 3oiy_A Reverse gyrase helicase 94.1 0.047 1.6E-06 62.5 6.2 68 870-972 18-88 (414)
217 3e1s_A Exodeoxyribonuclease V, 94.1 0.079 2.7E-06 63.6 8.3 88 845-967 149-251 (574)
218 1um8_A ATP-dependent CLP prote 94.1 0.031 1.1E-06 63.4 4.5 32 49-83 72-103 (376)
219 2pbr_A DTMP kinase, thymidylat 94.1 0.047 1.6E-06 55.1 5.4 33 51-83 2-34 (195)
220 2zan_A Vacuolar protein sortin 94.0 0.035 1.2E-06 64.6 4.8 37 48-86 166-202 (444)
221 4f92_B U5 small nuclear ribonu 94.0 0.076 2.6E-06 71.5 8.7 72 25-102 77-159 (1724)
222 4b4t_H 26S protease regulatory 94.0 0.026 8.9E-07 65.1 3.6 53 30-85 215-276 (467)
223 2pl3_A Probable ATP-dependent 94.0 0.13 4.4E-06 53.9 8.8 87 851-972 32-121 (236)
224 2ehv_A Hypothetical protein PH 93.9 0.042 1.4E-06 58.0 4.8 38 48-85 29-67 (251)
225 3kb2_A SPBC2 prophage-derived 93.9 0.032 1.1E-06 55.2 3.6 24 50-73 2-25 (173)
226 1ixz_A ATP-dependent metallopr 93.9 0.025 8.7E-07 60.2 3.0 22 52-73 52-73 (254)
227 3d8b_A Fidgetin-like protein 1 93.8 0.03 1E-06 63.2 3.7 34 48-84 116-149 (357)
228 1yrb_A ATP(GTP)binding protein 93.8 0.044 1.5E-06 58.4 4.9 35 49-84 14-48 (262)
229 3e70_C DPA, signal recognition 93.8 0.053 1.8E-06 60.3 5.6 38 47-84 127-164 (328)
230 1nn5_A Similar to deoxythymidy 93.8 0.062 2.1E-06 55.2 5.9 35 49-83 9-43 (215)
231 1v5w_A DMC1, meiotic recombina 93.8 0.039 1.3E-06 61.9 4.5 41 47-87 120-166 (343)
232 2z43_A DNA repair and recombin 93.8 0.037 1.3E-06 61.5 4.2 41 47-87 105-151 (324)
233 1hv8_A Putative ATP-dependent 93.7 0.22 7.5E-06 55.3 10.7 82 851-972 13-98 (367)
234 1qhx_A CPT, protein (chloramph 93.7 0.033 1.1E-06 55.6 3.4 24 50-73 4-27 (178)
235 1gvn_B Zeta; postsegregational 93.7 0.045 1.5E-06 59.8 4.6 48 26-73 5-57 (287)
236 1xti_A Probable ATP-dependent 93.7 0.25 8.4E-06 55.7 11.0 85 850-974 14-102 (391)
237 1np6_A Molybdopterin-guanine d 93.6 0.067 2.3E-06 53.8 5.5 36 50-85 7-42 (174)
238 3cio_A ETK, tyrosine-protein k 93.6 0.11 3.8E-06 56.9 7.8 38 47-84 102-140 (299)
239 2l8b_A Protein TRAI, DNA helic 93.6 0.13 4.3E-06 51.7 7.2 67 25-96 32-99 (189)
240 1n0w_A DNA repair protein RAD5 93.5 0.044 1.5E-06 57.5 4.2 39 48-86 23-67 (243)
241 1rj9_A FTSY, signal recognitio 93.5 0.071 2.4E-06 58.6 6.0 38 48-85 101-138 (304)
242 2i4i_A ATP-dependent RNA helic 93.5 0.3 1E-05 55.5 11.5 101 851-972 22-125 (417)
243 2plr_A DTMP kinase, probable t 93.5 0.055 1.9E-06 55.5 4.8 31 50-81 5-35 (213)
244 2rhm_A Putative kinase; P-loop 93.5 0.044 1.5E-06 55.3 4.0 25 49-73 5-29 (193)
245 3o8b_A HCV NS3 protease/helica 93.4 0.077 2.6E-06 64.4 6.4 50 49-101 232-281 (666)
246 1kht_A Adenylate kinase; phosp 93.4 0.047 1.6E-06 55.0 3.9 29 50-78 4-32 (192)
247 3nbx_X ATPase RAVA; AAA+ ATPas 93.4 0.056 1.9E-06 63.7 5.0 25 49-73 41-65 (500)
248 4a4z_A Antiviral helicase SKI2 93.4 0.079 2.7E-06 67.8 6.8 69 868-971 34-105 (997)
249 1ly1_A Polynucleotide kinase; 93.4 0.04 1.4E-06 54.9 3.3 22 50-71 3-24 (181)
250 3lw7_A Adenylate kinase relate 93.4 0.051 1.8E-06 53.5 4.1 29 50-82 2-30 (179)
251 3b9q_A Chloroplast SRP recepto 93.3 0.075 2.6E-06 58.4 5.7 38 48-85 99-136 (302)
252 1g8p_A Magnesium-chelatase 38 93.3 0.035 1.2E-06 61.9 3.1 24 50-73 46-69 (350)
253 3la6_A Tyrosine-protein kinase 93.3 0.14 4.6E-06 55.9 7.7 38 47-84 90-128 (286)
254 1zp6_A Hypothetical protein AT 93.3 0.042 1.4E-06 55.5 3.4 25 48-72 8-32 (191)
255 2j0s_A ATP-dependent RNA helic 93.3 0.27 9.2E-06 55.9 10.6 82 851-972 44-129 (410)
256 1w4r_A Thymidine kinase; type 93.3 0.079 2.7E-06 54.1 5.4 38 49-86 20-57 (195)
257 2pez_A Bifunctional 3'-phospho 93.3 0.082 2.8E-06 52.9 5.5 36 48-83 4-39 (179)
258 3upu_A ATP-dependent DNA helic 93.2 0.093 3.2E-06 61.3 6.6 62 873-968 25-94 (459)
259 2wwf_A Thymidilate kinase, put 93.2 0.095 3.2E-06 53.8 6.0 33 49-81 10-42 (212)
260 1iy2_A ATP-dependent metallopr 93.2 0.038 1.3E-06 59.8 3.0 45 28-73 44-97 (278)
261 3rc3_A ATP-dependent RNA helic 93.2 0.054 1.8E-06 66.2 4.6 48 49-100 155-202 (677)
262 3ug7_A Arsenical pump-driving 93.1 0.072 2.5E-06 59.9 5.3 41 47-87 24-64 (349)
263 3trf_A Shikimate kinase, SK; a 93.1 0.054 1.9E-06 54.4 3.9 25 49-73 5-29 (185)
264 3cpe_A Terminase, DNA packagin 93.1 0.24 8.2E-06 59.7 10.2 72 24-102 160-233 (592)
265 1kag_A SKI, shikimate kinase I 93.1 0.047 1.6E-06 54.1 3.4 25 49-73 4-28 (173)
266 1ojl_A Transcriptional regulat 93.1 0.075 2.5E-06 58.5 5.2 33 48-80 24-56 (304)
267 3iij_A Coilin-interacting nucl 93.1 0.056 1.9E-06 54.1 3.9 25 49-73 11-35 (180)
268 4edh_A DTMP kinase, thymidylat 93.1 0.14 4.6E-06 53.3 6.9 40 50-89 7-47 (213)
269 1wrb_A DJVLGB; RNA helicase, D 93.0 0.17 5.7E-06 53.7 7.8 78 873-973 45-125 (253)
270 4eun_A Thermoresistant glucoki 92.9 0.062 2.1E-06 55.0 4.1 26 48-73 28-53 (200)
271 2fz4_A DNA repair protein RAD2 92.9 0.15 5E-06 53.9 7.0 64 869-970 89-155 (237)
272 2o0j_A Terminase, DNA packagin 92.9 0.39 1.3E-05 54.5 10.9 72 25-103 161-234 (385)
273 1c9k_A COBU, adenosylcobinamid 92.8 0.043 1.5E-06 55.4 2.5 48 51-102 1-48 (180)
274 1zuh_A Shikimate kinase; alpha 92.8 0.062 2.1E-06 53.1 3.8 27 47-73 5-31 (168)
275 2c95_A Adenylate kinase 1; tra 92.8 0.066 2.2E-06 54.2 4.0 25 49-73 9-33 (196)
276 3cmu_A Protein RECA, recombina 92.8 0.078 2.7E-06 71.4 5.7 40 48-87 1426-1465(2050)
277 1knq_A Gluconate kinase; ALFA/ 92.8 0.068 2.3E-06 53.2 4.1 25 49-73 8-32 (175)
278 2og2_A Putative signal recogni 92.8 0.099 3.4E-06 58.8 5.7 38 48-85 156-193 (359)
279 1ls1_A Signal recognition part 92.8 0.096 3.3E-06 57.4 5.5 37 49-85 98-134 (295)
280 3vfd_A Spastin; ATPase, microt 92.8 0.058 2E-06 61.5 3.9 54 29-85 120-181 (389)
281 3jvv_A Twitching mobility prot 92.7 0.08 2.7E-06 59.6 4.9 35 48-82 122-157 (356)
282 3uie_A Adenylyl-sulfate kinase 92.7 0.11 3.9E-06 53.0 5.7 32 48-79 24-55 (200)
283 2p5t_B PEZT; postsegregational 92.7 0.063 2.2E-06 57.3 3.8 46 28-73 6-56 (253)
284 3zq6_A Putative arsenical pump 92.7 0.095 3.3E-06 58.2 5.4 38 50-87 15-52 (324)
285 1gm5_A RECG; helicase, replica 92.6 0.16 5.6E-06 63.0 7.9 68 870-972 365-441 (780)
286 1tev_A UMP-CMP kinase; ploop, 92.6 0.065 2.2E-06 54.0 3.7 24 50-73 4-27 (196)
287 2ffh_A Protein (FFH); SRP54, s 92.6 0.094 3.2E-06 60.3 5.3 37 49-85 98-134 (425)
288 3vaa_A Shikimate kinase, SK; s 92.6 0.073 2.5E-06 54.4 4.1 25 49-73 25-49 (199)
289 2cdn_A Adenylate kinase; phosp 92.6 0.077 2.6E-06 54.2 4.2 24 50-73 21-44 (201)
290 2db3_A ATP-dependent RNA helic 92.6 0.41 1.4E-05 55.2 10.9 89 850-972 62-153 (434)
291 2iyv_A Shikimate kinase, SK; t 92.5 0.068 2.3E-06 53.7 3.6 24 50-73 3-26 (184)
292 1fuu_A Yeast initiation factor 92.5 0.27 9.3E-06 55.3 9.1 84 850-972 27-113 (394)
293 2qm8_A GTPase/ATPase; G protei 92.5 0.11 3.7E-06 58.1 5.6 39 47-85 53-91 (337)
294 1g41_A Heat shock protein HSLU 92.5 0.067 2.3E-06 61.8 3.9 25 49-73 50-74 (444)
295 3cm0_A Adenylate kinase; ATP-b 92.5 0.066 2.3E-06 53.8 3.5 24 50-73 5-28 (186)
296 1qvr_A CLPB protein; coiled co 92.5 0.12 4E-06 65.3 6.5 37 49-85 191-234 (854)
297 2d7d_A Uvrabc system protein B 92.5 0.33 1.1E-05 59.3 10.3 78 20-102 5-82 (661)
298 3t61_A Gluconokinase; PSI-biol 92.4 0.083 2.8E-06 54.0 4.1 25 49-73 18-42 (202)
299 2ze6_A Isopentenyl transferase 92.4 0.07 2.4E-06 57.0 3.7 24 50-73 2-25 (253)
300 2i1q_A DNA repair and recombin 92.3 0.078 2.7E-06 58.7 4.1 51 47-97 96-163 (322)
301 2www_A Methylmalonic aciduria 92.3 0.12 4E-06 58.1 5.6 38 48-85 73-110 (349)
302 1gtv_A TMK, thymidylate kinase 92.3 0.045 1.6E-06 56.3 2.0 33 51-83 2-34 (214)
303 2yhs_A FTSY, cell division pro 92.3 0.12 4.1E-06 60.3 5.7 37 48-84 292-328 (503)
304 1via_A Shikimate kinase; struc 92.3 0.074 2.5E-06 53.0 3.5 23 51-73 6-28 (175)
305 2z0m_A 337AA long hypothetical 92.3 0.25 8.4E-06 54.2 8.1 62 873-972 16-80 (337)
306 2bwj_A Adenylate kinase 5; pho 92.3 0.083 2.8E-06 53.6 3.9 25 49-73 12-36 (199)
307 3fb4_A Adenylate kinase; psych 92.3 0.076 2.6E-06 54.8 3.7 22 52-73 3-24 (216)
308 1ihu_A Arsenical pump-driving 92.2 0.12 4.1E-06 62.4 5.9 39 48-86 7-45 (589)
309 2p6r_A Afuhel308 helicase; pro 92.2 0.12 4E-06 63.8 5.9 87 846-971 1-91 (702)
310 3lv8_A DTMP kinase, thymidylat 92.2 0.21 7.1E-06 52.8 7.0 42 49-90 27-70 (236)
311 4eaq_A DTMP kinase, thymidylat 92.2 0.11 3.8E-06 54.6 4.9 34 49-83 26-59 (229)
312 3umf_A Adenylate kinase; rossm 92.2 0.082 2.8E-06 55.1 3.8 26 48-73 28-53 (217)
313 1qf9_A UMP/CMP kinase, protein 92.2 0.081 2.8E-06 53.2 3.7 24 50-73 7-30 (194)
314 1m7g_A Adenylylsulfate kinase; 92.1 0.12 4.1E-06 53.3 5.0 50 27-84 11-61 (211)
315 3pxi_A Negative regulator of g 92.1 0.083 2.8E-06 65.8 4.4 42 30-75 186-227 (758)
316 2ce7_A Cell division protein F 92.1 0.08 2.7E-06 61.9 3.9 32 50-84 50-81 (476)
317 3e2i_A Thymidine kinase; Zn-bi 92.1 0.15 5E-06 52.9 5.4 40 48-87 27-66 (219)
318 2ewv_A Twitching motility prot 92.0 0.11 3.7E-06 58.9 4.9 36 48-83 135-171 (372)
319 2p67_A LAO/AO transport system 92.0 0.13 4.6E-06 57.4 5.6 39 47-85 54-92 (341)
320 3l9o_A ATP-dependent RNA helic 92.0 0.23 7.9E-06 64.2 8.4 69 868-971 179-250 (1108)
321 2v54_A DTMP kinase, thymidylat 92.0 0.085 2.9E-06 53.8 3.6 34 49-84 4-37 (204)
322 3tau_A Guanylate kinase, GMP k 92.0 0.09 3.1E-06 54.2 3.8 26 48-73 7-32 (208)
323 3pey_A ATP-dependent RNA helic 92.0 0.32 1.1E-05 54.6 8.8 83 851-972 12-99 (395)
324 3pxi_A Negative regulator of g 92.0 0.14 4.9E-06 63.6 6.3 34 51-84 523-556 (758)
325 1y63_A LMAJ004144AAA protein; 91.9 0.096 3.3E-06 52.8 3.9 24 49-72 10-33 (184)
326 3dl0_A Adenylate kinase; phosp 91.8 0.074 2.5E-06 55.0 3.0 22 52-73 3-24 (216)
327 2eyu_A Twitching motility prot 91.8 0.13 4.4E-06 55.3 4.9 36 47-82 23-59 (261)
328 1ye8_A Protein THEP1, hypothet 91.8 0.096 3.3E-06 52.8 3.7 23 51-73 2-24 (178)
329 3co5_A Putative two-component 91.8 0.078 2.7E-06 51.2 2.9 20 883-902 25-44 (143)
330 3hu3_A Transitional endoplasmi 91.8 0.078 2.7E-06 62.4 3.4 52 29-83 209-269 (489)
331 1e6c_A Shikimate kinase; phosp 91.7 0.093 3.2E-06 51.9 3.5 24 50-73 3-26 (173)
332 4tmk_A Protein (thymidylate ki 91.7 0.27 9.3E-06 51.0 7.1 46 50-95 4-51 (213)
333 1aky_A Adenylate kinase; ATP:A 91.7 0.11 3.6E-06 54.0 4.1 25 49-73 4-28 (220)
334 3m6a_A ATP-dependent protease 91.7 0.092 3.1E-06 62.7 4.0 26 48-73 107-132 (543)
335 1ukz_A Uridylate kinase; trans 91.7 0.087 3E-06 53.8 3.4 24 49-72 15-38 (203)
336 2jaq_A Deoxyguanosine kinase; 91.7 0.097 3.3E-06 53.2 3.7 23 51-73 2-24 (205)
337 3bs4_A Uncharacterized protein 91.7 0.13 4.4E-06 55.1 4.7 50 48-98 20-69 (260)
338 2qor_A Guanylate kinase; phosp 91.7 0.083 2.8E-06 54.2 3.1 25 49-73 12-36 (204)
339 3v9p_A DTMP kinase, thymidylat 91.7 0.18 6.2E-06 52.9 5.8 41 49-89 25-70 (227)
340 3i5x_A ATP-dependent RNA helic 91.6 0.45 1.6E-05 56.7 10.0 88 850-973 78-171 (563)
341 1kgd_A CASK, peripheral plasma 91.6 0.096 3.3E-06 52.7 3.4 26 48-73 4-29 (180)
342 2oap_1 GSPE-2, type II secreti 91.6 0.15 5.1E-06 60.3 5.5 48 28-82 245-292 (511)
343 2vli_A Antibiotic resistance p 91.6 0.064 2.2E-06 53.7 2.0 24 49-72 5-28 (183)
344 2bbw_A Adenylate kinase 4, AK4 91.5 0.11 3.9E-06 54.9 4.1 25 49-73 27-51 (246)
345 3tbk_A RIG-I helicase domain; 91.5 0.3 1E-05 57.7 8.2 72 871-972 2-76 (555)
346 2j41_A Guanylate kinase; GMP, 91.5 0.11 3.6E-06 53.1 3.7 25 49-73 6-30 (207)
347 2qen_A Walker-type ATPase; unk 91.5 0.18 6.2E-06 55.8 5.9 38 30-73 18-55 (350)
348 1zak_A Adenylate kinase; ATP:A 91.4 0.11 3.8E-06 53.9 3.9 25 49-73 5-29 (222)
349 3iqw_A Tail-anchored protein t 91.4 0.16 5.4E-06 56.6 5.3 38 49-86 16-53 (334)
350 1tf7_A KAIC; homohexamer, hexa 91.4 0.15 5.1E-06 60.6 5.4 42 47-88 279-320 (525)
351 2xgj_A ATP-dependent RNA helic 91.4 0.24 8.2E-06 63.4 7.6 69 868-971 81-152 (1010)
352 4ag6_A VIRB4 ATPase, type IV s 91.4 0.16 5.4E-06 57.9 5.3 43 48-90 34-76 (392)
353 3tlx_A Adenylate kinase 2; str 91.4 0.12 4E-06 54.9 4.0 25 49-73 29-53 (243)
354 2bdt_A BH3686; alpha-beta prot 91.3 0.097 3.3E-06 52.8 3.2 22 50-71 3-24 (189)
355 4a74_A DNA repair and recombin 91.3 0.12 4E-06 53.7 3.8 28 48-75 24-51 (231)
356 3tr0_A Guanylate kinase, GMP k 91.3 0.11 3.9E-06 52.9 3.7 24 49-72 7-30 (205)
357 2woo_A ATPase GET3; tail-ancho 91.3 0.19 6.5E-06 55.9 5.8 38 49-86 19-56 (329)
358 2orv_A Thymidine kinase; TP4A 91.3 0.18 6.2E-06 52.7 5.2 38 49-86 19-56 (234)
359 3c8u_A Fructokinase; YP_612366 91.2 0.2 6.7E-06 51.6 5.4 38 47-84 20-57 (208)
360 3sqw_A ATP-dependent RNA helic 91.2 0.53 1.8E-05 56.5 10.0 86 851-972 28-119 (579)
361 2fna_A Conserved hypothetical 91.2 0.14 4.7E-06 56.9 4.5 36 30-73 19-54 (357)
362 2wsm_A Hydrogenase expression/ 91.1 0.22 7.5E-06 51.4 5.7 35 49-84 30-64 (221)
363 2grj_A Dephospho-COA kinase; T 91.1 0.12 4.1E-06 52.8 3.6 27 46-72 9-35 (192)
364 1ak2_A Adenylate kinase isoenz 91.1 0.14 4.7E-06 53.8 4.2 24 50-73 17-40 (233)
365 2pt5_A Shikimate kinase, SK; a 91.1 0.13 4.3E-06 50.7 3.7 23 51-73 2-24 (168)
366 1qvr_A CLPB protein; coiled co 91.1 0.23 8E-06 62.6 6.9 34 50-83 589-622 (854)
367 2xb4_A Adenylate kinase; ATP-b 91.0 0.12 4.2E-06 53.8 3.7 23 51-73 2-24 (223)
368 3n70_A Transport activator; si 91.0 0.11 3.6E-06 50.3 2.9 20 883-902 22-41 (145)
369 3eiq_A Eukaryotic initiation f 91.0 0.36 1.2E-05 54.7 8.0 84 850-972 46-132 (414)
370 2dhr_A FTSH; AAA+ protein, hex 91.0 0.093 3.2E-06 61.7 2.9 45 29-73 36-88 (499)
371 3be4_A Adenylate kinase; malar 91.0 0.13 4.4E-06 53.4 3.7 24 50-73 6-29 (217)
372 3kjh_A CO dehydrogenase/acetyl 90.9 0.13 4.4E-06 54.1 3.8 34 51-85 3-36 (254)
373 1svm_A Large T antigen; AAA+ f 90.9 0.14 4.8E-06 58.0 4.2 33 47-82 167-199 (377)
374 3sr0_A Adenylate kinase; phosp 90.9 0.13 4.6E-06 53.1 3.7 23 51-73 2-24 (206)
375 3io3_A DEHA2D07832P; chaperone 90.8 0.22 7.6E-06 55.8 5.7 38 49-86 18-57 (348)
376 4a2p_A RIG-I, retinoic acid in 90.8 0.37 1.3E-05 57.0 8.1 74 870-973 4-80 (556)
377 3ec2_A DNA replication protein 90.7 0.084 2.9E-06 52.9 2.0 18 885-902 38-55 (180)
378 1zd8_A GTP:AMP phosphotransfer 90.7 0.12 4E-06 54.0 3.2 25 49-73 7-31 (227)
379 2va8_A SSO2462, SKI2-type heli 90.7 0.58 2E-05 57.7 10.0 67 871-971 27-98 (715)
380 1byi_A Dethiobiotin synthase; 90.7 0.23 7.8E-06 51.4 5.4 34 50-83 3-36 (224)
381 3ld9_A DTMP kinase, thymidylat 90.7 0.22 7.6E-06 52.0 5.2 45 48-92 20-67 (223)
382 1e4v_A Adenylate kinase; trans 90.6 0.13 4.6E-06 53.0 3.5 22 52-73 3-24 (214)
383 3b9p_A CG5977-PA, isoform A; A 90.6 0.17 5.9E-06 55.0 4.5 19 884-902 53-71 (297)
384 3mwy_W Chromo domain-containin 90.6 0.35 1.2E-05 60.5 7.8 73 24-100 233-308 (800)
385 1jbk_A CLPB protein; beta barr 90.4 0.1 3.5E-06 51.9 2.3 19 884-902 42-60 (195)
386 1lv7_A FTSH; alpha/beta domain 90.4 0.11 3.6E-06 55.5 2.5 19 884-902 44-62 (257)
387 1cke_A CK, MSSA, protein (cyti 90.4 0.16 5.6E-06 52.6 3.9 24 50-73 6-29 (227)
388 2xzl_A ATP-dependent helicase 90.4 0.44 1.5E-05 59.5 8.4 64 873-970 360-426 (802)
389 1e9r_A Conjugal transfer prote 90.4 0.22 7.6E-06 57.5 5.4 43 49-91 53-95 (437)
390 1hyq_A MIND, cell division inh 90.3 0.25 8.5E-06 52.6 5.4 35 50-84 4-38 (263)
391 2oze_A ORF delta'; para, walke 90.3 0.36 1.2E-05 52.4 6.7 34 50-83 35-71 (298)
392 3cmw_A Protein RECA, recombina 90.3 0.21 7.2E-06 66.5 5.6 42 47-88 730-771 (1706)
393 1w36_D RECD, exodeoxyribonucle 90.2 0.52 1.8E-05 57.0 8.7 65 875-970 151-218 (608)
394 3end_A Light-independent proto 90.2 0.26 8.8E-06 54.0 5.5 36 49-84 41-76 (307)
395 3k1j_A LON protease, ATP-depen 90.2 0.19 6.4E-06 60.9 4.7 25 49-73 60-84 (604)
396 3a00_A Guanylate kinase, GMP k 90.2 0.13 4.5E-06 51.9 2.9 24 50-73 2-25 (186)
397 1jjv_A Dephospho-COA kinase; P 90.1 0.14 4.9E-06 52.3 3.2 21 51-71 4-24 (206)
398 1cp2_A CP2, nitrogenase iron p 90.1 0.26 8.8E-06 52.7 5.3 32 52-83 4-35 (269)
399 1r6b_X CLPA protein; AAA+, N-t 90.1 0.25 8.7E-06 61.4 6.0 28 48-75 206-233 (758)
400 2w58_A DNAI, primosome compone 90.1 0.11 3.9E-06 52.9 2.3 18 885-902 54-71 (202)
401 3cf2_A TER ATPase, transitiona 90.0 0.11 3.9E-06 64.3 2.6 34 48-84 237-270 (806)
402 3lda_A DNA repair protein RAD5 90.0 0.18 6.3E-06 57.5 4.2 39 47-85 176-220 (400)
403 1f2t_A RAD50 ABC-ATPase; DNA d 90.0 0.2 6.7E-06 48.9 3.9 27 49-75 23-49 (149)
404 2p65_A Hypothetical protein PF 90.0 0.11 3.7E-06 51.7 2.0 20 884-903 42-61 (187)
405 3cmw_A Protein RECA, recombina 89.9 0.25 8.5E-06 65.8 5.8 39 48-86 382-420 (1706)
406 3q9l_A Septum site-determining 89.9 0.24 8.2E-06 52.5 4.8 35 50-84 4-38 (260)
407 2ph1_A Nucleotide-binding prot 89.9 0.24 8.2E-06 52.9 4.8 35 50-84 20-54 (262)
408 2woj_A ATPase GET3; tail-ancho 89.9 0.28 9.7E-06 55.1 5.6 39 49-87 18-58 (354)
409 2afh_E Nitrogenase iron protei 89.8 0.28 9.6E-06 53.2 5.4 32 52-83 5-36 (289)
410 1pzn_A RAD51, DNA repair and r 89.8 0.19 6.4E-06 56.4 4.0 27 48-74 130-156 (349)
411 4dzz_A Plasmid partitioning pr 89.8 0.22 7.5E-06 50.7 4.2 35 51-85 4-38 (206)
412 1g3q_A MIND ATPase, cell divis 89.7 0.26 8.7E-06 51.5 4.8 35 50-84 4-38 (237)
413 4gp7_A Metallophosphoesterase; 89.7 0.13 4.5E-06 51.2 2.3 21 48-68 8-28 (171)
414 4ddu_A Reverse gyrase; topoiso 89.6 0.4 1.4E-05 61.9 7.4 67 870-971 75-144 (1104)
415 1ex7_A Guanylate kinase; subst 89.6 0.14 4.9E-06 51.9 2.6 17 886-902 2-18 (186)
416 2eyq_A TRCF, transcription-rep 89.6 0.42 1.4E-05 62.1 7.6 46 52-100 20-65 (1151)
417 3b85_A Phosphate starvation-in 89.5 0.33 1.1E-05 50.2 5.3 39 27-72 7-45 (208)
418 3cwq_A Para family chromosome 89.5 0.31 1.1E-05 50.2 5.1 32 51-83 3-34 (209)
419 2zj8_A DNA helicase, putative 89.4 0.59 2E-05 57.7 8.5 68 871-972 20-92 (720)
420 4b3f_X DNA-binding protein smu 89.4 0.8 2.7E-05 55.8 9.5 34 873-906 189-226 (646)
421 1qhx_A CPT, protein (chloramph 89.3 0.14 4.9E-06 50.9 2.3 18 885-902 3-20 (178)
422 1zp6_A Hypothetical protein AT 89.3 0.13 4.5E-06 51.8 2.1 20 883-902 7-26 (191)
423 2qt1_A Nicotinamide riboside k 89.3 0.21 7.1E-06 51.2 3.6 23 49-71 21-43 (207)
424 2qz4_A Paraplegin; AAA+, SPG7, 89.3 0.14 4.8E-06 54.3 2.4 20 883-902 37-56 (262)
425 2hf9_A Probable hydrogenase ni 89.3 0.48 1.6E-05 48.9 6.5 34 49-83 38-71 (226)
426 1r6b_X CLPA protein; AAA+, N-t 89.2 0.26 9E-06 61.3 5.1 24 50-73 489-512 (758)
427 3fmp_B ATP-dependent RNA helic 89.2 0.72 2.5E-05 53.7 8.6 87 850-975 98-189 (479)
428 1sq5_A Pantothenate kinase; P- 89.1 0.48 1.6E-05 52.0 6.6 38 47-84 78-117 (308)
429 3asz_A Uridine kinase; cytidin 89.1 0.23 7.9E-06 50.9 3.8 26 48-73 5-30 (211)
430 1ixz_A ATP-dependent metallopr 89.0 0.15 5E-06 54.2 2.3 18 885-902 49-66 (254)
431 3cmu_A Protein RECA, recombina 89.0 0.29 1E-05 66.0 5.5 39 47-85 381-419 (2050)
432 1kag_A SKI, shikimate kinase I 89.0 0.17 5.8E-06 50.0 2.6 18 885-902 4-21 (173)
433 1ex7_A Guanylate kinase; subst 89.0 0.23 7.9E-06 50.4 3.6 23 50-72 2-24 (186)
434 3te6_A Regulatory protein SIR3 88.8 0.17 5.7E-06 56.0 2.6 20 884-903 44-63 (318)
435 3ney_A 55 kDa erythrocyte memb 88.8 0.28 9.4E-06 50.3 4.1 25 48-72 18-42 (197)
436 3ake_A Cytidylate kinase; CMP 88.8 0.26 8.9E-06 50.2 3.9 24 50-73 3-26 (208)
437 3trf_A Shikimate kinase, SK; a 88.7 0.17 5.7E-06 50.8 2.3 18 885-902 5-22 (185)
438 2v9p_A Replication protein E1; 88.7 0.33 1.1E-05 53.3 4.8 32 47-81 124-155 (305)
439 3igf_A ALL4481 protein; two-do 88.7 0.23 7.8E-06 56.2 3.7 36 50-85 3-38 (374)
440 3ea0_A ATPase, para family; al 88.7 0.34 1.1E-05 50.8 4.8 34 51-84 7-41 (245)
441 1uj2_A Uridine-cytidine kinase 88.7 0.22 7.4E-06 53.0 3.3 24 49-72 22-45 (252)
442 3h4m_A Proteasome-activating n 88.7 0.17 5.7E-06 54.7 2.4 20 883-902 49-68 (285)
443 1lvg_A Guanylate kinase, GMP k 88.6 0.25 8.6E-06 50.4 3.6 25 49-73 4-28 (198)
444 3tqc_A Pantothenate kinase; bi 88.6 0.64 2.2E-05 51.3 7.1 37 49-85 92-130 (321)
445 3r20_A Cytidylate kinase; stru 88.5 0.27 9.4E-06 51.7 3.9 25 49-73 9-33 (233)
446 3cf0_A Transitional endoplasmi 88.5 0.17 5.9E-06 55.4 2.5 20 883-902 47-66 (301)
447 3hjn_A DTMP kinase, thymidylat 88.5 0.44 1.5E-05 48.7 5.4 41 52-92 3-44 (197)
448 2if2_A Dephospho-COA kinase; a 88.5 0.23 8E-06 50.6 3.3 21 51-71 3-23 (204)
449 3kta_A Chromosome segregation 88.5 0.26 8.8E-06 49.2 3.6 26 49-74 26-51 (182)
450 3qks_A DNA double-strand break 88.4 0.28 9.6E-06 50.4 3.9 27 49-75 23-49 (203)
451 1uf9_A TT1252 protein; P-loop, 88.4 0.3 1E-05 49.5 4.1 23 49-71 8-30 (203)
452 2i3b_A HCR-ntpase, human cance 88.4 0.32 1.1E-05 49.4 4.2 28 50-77 2-29 (189)
453 3cf2_A TER ATPase, transitiona 88.4 0.16 5.4E-06 63.0 2.2 31 50-83 512-542 (806)
454 2oca_A DAR protein, ATP-depend 88.4 0.47 1.6E-05 55.8 6.3 67 871-971 111-180 (510)
455 3a00_A Guanylate kinase, GMP k 88.4 0.19 6.7E-06 50.6 2.6 18 885-902 1-18 (186)
456 2gk6_A Regulator of nonsense t 88.4 0.61 2.1E-05 56.5 7.4 64 873-970 180-246 (624)
457 1ye8_A Protein THEP1, hypothet 88.0 0.19 6.4E-06 50.6 2.2 16 887-902 2-17 (178)
458 3kb2_A SPBC2 prophage-derived 88.0 0.19 6.6E-06 49.4 2.2 16 887-902 3-18 (173)
459 2x8a_A Nuclear valosin-contain 88.0 0.19 6.5E-06 54.3 2.4 19 884-902 43-61 (274)
460 2bjv_A PSP operon transcriptio 88.0 0.23 7.9E-06 53.0 3.0 20 883-902 27-46 (265)
461 3vaa_A Shikimate kinase, SK; s 87.9 0.21 7E-06 51.0 2.5 18 885-902 25-42 (199)
462 1rif_A DAR protein, DNA helica 87.9 0.55 1.9E-05 50.6 6.0 66 872-971 112-180 (282)
463 3iij_A Coilin-interacting nucl 87.7 0.24 8E-06 49.5 2.7 20 884-903 10-29 (180)
464 1iy2_A ATP-dependent metallopr 87.7 0.2 7E-06 54.0 2.3 18 885-902 73-90 (278)
465 1ltq_A Polynucleotide kinase; 87.6 0.27 9.3E-06 53.5 3.3 22 50-71 3-24 (301)
466 3lnc_A Guanylate kinase, GMP k 87.5 0.22 7.5E-06 52.1 2.4 24 49-72 27-51 (231)
467 2r62_A Cell division protease 87.4 0.13 4.5E-06 55.0 0.6 20 883-902 42-61 (268)
468 2qmh_A HPR kinase/phosphorylas 87.4 0.29 1E-05 50.0 3.1 24 49-72 34-57 (205)
469 1wcv_1 SOJ, segregation protei 87.4 0.32 1.1E-05 51.8 3.6 34 51-84 9-42 (257)
470 3f9v_A Minichromosome maintena 87.3 0.13 4.4E-06 62.0 0.5 21 51-71 329-349 (595)
471 1l8q_A Chromosomal replication 87.2 0.26 8.7E-06 54.4 2.8 18 885-902 37-54 (324)
472 3crm_A TRNA delta(2)-isopenten 87.2 0.27 9.3E-06 54.3 3.0 24 50-73 6-29 (323)
473 1ofh_A ATP-dependent HSL prote 87.1 0.25 8.5E-06 53.7 2.7 19 884-902 49-67 (310)
474 3fho_A ATP-dependent RNA helic 87.1 0.75 2.6E-05 54.2 7.0 67 873-971 141-212 (508)
475 2kjq_A DNAA-related protein; s 87.1 0.2 6.7E-06 48.9 1.6 18 885-902 36-53 (149)
476 1q3t_A Cytidylate kinase; nucl 87.1 0.4 1.4E-05 50.3 4.2 26 48-73 15-40 (236)
477 2fwr_A DNA repair protein RAD2 86.9 0.86 2.9E-05 52.9 7.3 41 868-908 88-131 (472)
478 1ypw_A Transitional endoplasmi 86.9 0.19 6.6E-06 62.8 1.8 26 48-73 510-535 (806)
479 3fkq_A NTRC-like two-domain pr 86.9 0.39 1.3E-05 54.3 4.2 36 51-86 146-181 (373)
480 3bos_A Putative DNA replicatio 86.9 0.25 8.6E-06 51.3 2.4 19 884-902 51-69 (242)
481 3k9g_A PF-32 protein; ssgcid, 86.8 0.34 1.2E-05 51.7 3.5 35 50-85 29-63 (267)
482 1s96_A Guanylate kinase, GMP k 86.8 0.34 1.2E-05 50.4 3.4 25 48-72 15-39 (219)
483 2jeo_A Uridine-cytidine kinase 86.8 0.4 1.4E-05 50.6 4.0 25 49-73 25-49 (245)
484 1in4_A RUVB, holliday junction 86.8 0.25 8.7E-06 54.9 2.5 25 884-910 50-74 (334)
485 3uie_A Adenylyl-sulfate kinase 86.7 0.29 1E-05 49.9 2.7 29 874-902 12-42 (200)
486 4eun_A Thermoresistant glucoki 86.6 0.26 9E-06 50.2 2.3 18 885-902 29-46 (200)
487 3t61_A Gluconokinase; PSI-biol 86.6 0.28 9.7E-06 49.9 2.6 18 885-902 18-35 (202)
488 3eie_A Vacuolar protein sortin 86.6 0.28 9.5E-06 54.2 2.7 21 882-902 48-68 (322)
489 3pg5_A Uncharacterized protein 86.5 0.31 1.1E-05 54.9 3.1 35 51-85 4-38 (361)
490 1lvg_A Guanylate kinase, GMP k 86.5 0.28 9.4E-06 50.1 2.4 18 885-902 4-21 (198)
491 1tf5_A Preprotein translocase 86.4 1.9 6.4E-05 53.3 10.0 68 26-102 82-149 (844)
492 3tau_A Guanylate kinase, GMP k 86.4 0.26 8.8E-06 50.7 2.2 17 886-902 9-25 (208)
493 1odf_A YGR205W, hypothetical 3 86.4 0.43 1.5E-05 52.0 4.0 28 47-74 29-56 (290)
494 1ypw_A Transitional endoplasmi 86.4 0.26 8.9E-06 61.6 2.5 25 48-72 237-261 (806)
495 3t15_A Ribulose bisphosphate c 86.4 0.43 1.5E-05 52.0 4.0 20 883-902 34-53 (293)
496 1x6v_B Bifunctional 3'-phospho 86.3 0.64 2.2E-05 55.9 5.8 53 27-83 34-86 (630)
497 1kgd_A CASK, peripheral plasma 86.3 0.27 9.1E-06 49.3 2.2 17 886-902 6-22 (180)
498 2xj4_A MIPZ; replication, cell 86.3 0.46 1.6E-05 51.5 4.2 33 51-83 7-39 (286)
499 4e22_A Cytidylate kinase; P-lo 86.3 0.4 1.4E-05 51.0 3.7 25 49-73 27-51 (252)
500 1znw_A Guanylate kinase, GMP k 86.2 0.38 1.3E-05 49.3 3.4 25 49-73 20-44 (207)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=2.3e-69 Score=666.81 Aligned_cols=440 Identities=29% Similarity=0.391 Sum_probs=329.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHHHHh
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVKES 104 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~~~~ 104 (1044)
+..||++|++||..+++. .+++||+||||||||+|++.+|..++..|.+||+|||||.|||++++||....
T Consensus 187 ~~~LN~~Q~~AV~~al~~------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~--- 257 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALSQ------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCK--- 257 (646)
T ss_dssp STTCCHHHHHHHHHHHHC------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTT---
T ss_pred CCCCCHHHHHHHHHHhcC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcC---
Confidence 468999999999999975 47999999999999999999999999999999999999999999999996431
Q ss_pred hhhccccCCCCCCCcEEEecCCccccccchhhHHhHHHHHhhhhhccCCcccchhhHHhhHHHhhhhhhhchhhhhhhhh
Q 041971 105 VERDCRDALFFPLGDILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYIDNESM 184 (1044)
Q Consensus 105 ~~~~g~~~~~~~~~~ivr~G~~~~~~i~~~l~~~~l~~r~~~l~~~~~~~~~w~~~l~s~i~~L~~~~~~y~~~l~~~~~ 184 (1044)
.+++|+|+..++ .+.+....+++...+.... ..+
T Consensus 258 -------------~~ilRlG~~~r~--~~~~~~~~l~~~~~~~~~~--------~~~----------------------- 291 (646)
T 4b3f_X 258 -------------QRILRLGHPARL--LESIQQHSLDAVLARSDSA--------QIV----------------------- 291 (646)
T ss_dssp -------------CCEEECSCCSSC--CHHHHTTBHHHHHTTTTCS--------STH-----------------------
T ss_pred -------------CceEEecchhhh--hhhhhhhhHHHHHhhchHH--------HHH-----------------------
Confidence 269999999874 3556555555443321000 000
Q ss_pred hhhcccccchhhhhhcccccccccccchhhHHHHHHHHHHhhhhhhHHHhhhcccCCCcccccccHHHHHHHHHHHHHHH
Q 041971 185 KQSEDINGDIIKEKECGKEADVSDVEIKPFLEFVRDRFKCIAAPLRSCIFNFCTRIPKCYIGKDNFHVMATLISLLDSFE 264 (1044)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~l~~~lp~s~~~~~~~~~~~~l~~~l~~~~ 264 (1044)
..+++.+....... ...
T Consensus 292 -------------------------------~~~~~~~~~~~~~~-----------~~~--------------------- 308 (646)
T 4b3f_X 292 -------------------------------ADIRKDIDQVFVKN-----------KKT--------------------- 308 (646)
T ss_dssp -------------------------------HHHHHHHTTSSTTT-----------TC----------------------
T ss_pred -------------------------------HHHHHHHHHHHHhh-----------hhh---------------------
Confidence 00000000000000 000
Q ss_pred HhhhhcccchHHHHHHhccccccccchhhhhHHHHHHHhHhhHHHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHhcccC
Q 041971 265 TLLFEDNLVSEELEELLSHSVDEGLSKSIVGIKYLLHKRRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCLKRA 344 (1044)
Q Consensus 265 ~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~li~~~~l~~a 344 (1044)
.. .. .+......++.+.+.++. .........+..+
T Consensus 309 ---------~~---------~~----------------~~~~~~~~~~~l~~~l~~-----------~~~~~~~~~l~~~ 343 (646)
T 4b3f_X 309 ---------QD---------KR----------------EKSNFRNEIKLLRKELKE-----------REEAAMLESLTSA 343 (646)
T ss_dssp ---------------------------------------CCSSHHHHHHHHHHHHH-----------HHHHHHHHHHHHC
T ss_pred ---------hh---------HH----------------HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhc
Confidence 00 00 000000000000000000 0001222346778
Q ss_pred cEEEEcCccchhh---ccccCCCCCEEEEEcCCCCCchhhhhhccccCccEEEEEcCCCCCCccccccccccccccCcHH
Q 041971 345 SLFLSTASSSYML---HSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLF 421 (1044)
Q Consensus 345 ~vI~~T~ss~~~l---~~~~~~~fd~vIIDEAsq~~e~~~lipl~l~~~~~~ILVGD~~QL~P~v~~~~~~~~~~~~Slf 421 (1044)
++|++|+.++... .......||+||||||+|++|+++++|+. .++++||||||+||||++.+..+...|++.|+|
T Consensus 344 ~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~--~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~Slf 421 (646)
T 4b3f_X 344 NVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLL--KARKCILAGDHKQLPPTTVSHKAALAGLSLSLM 421 (646)
T ss_dssp SEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGG--GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHH
T ss_pred ceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhcc--ccceEEEcCCccccCceecchhhhhccccchHH
Confidence 9999998876542 23445679999999999999999999996 468999999999999999998889999999999
Q ss_pred HHHHhc--CCCccccccccccCccccccccccccCCcccccccccccchhhhc---cCCCCCCCceEeecCCC----ccc
Q 041971 422 ERLSYL--GYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRF---LHGPMYGPYSFINVFGG----REE 492 (1044)
Q Consensus 422 erl~~~--~~~~~~L~~qyR~~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~---~~~~~~~~~~fi~v~~g----~e~ 492 (1044)
+|+... +.+.++|++||||||.|+.|+|..||+|+|.+++.+..+...... .......|+.|+++.+. .++
T Consensus 422 erL~~~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~ 501 (646)
T 4b3f_X 422 ERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEE 501 (646)
T ss_dssp HHHHHHHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-
T ss_pred HHHHHhcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccc
Confidence 999865 344568999999999999999999999999988876654332111 11122458999999553 233
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhhcccCCccEEEEcccHHHHHHHHHHhccccccCCCCcEEEcccCCCCCCcccEE
Q 041971 493 FIEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVKVMSIDGFQGGEEDLI 572 (1044)
Q Consensus 493 ~~~~s~~N~~Ea~~v~~lv~~l~~~~~~~~~~~~IgVItpy~~Q~~~i~~~L~~~~~~~~~~~v~V~TVd~~QG~E~DiV 572 (1044)
..+.|+.|..||..|..++..|++.+. +..+|||||||++|+.+|++.|.+.+. +++|+|||+|||+|+|||
T Consensus 502 ~~~~s~~N~~EA~~V~~~v~~L~~~gv---~~~dIgVItpYraQ~~~l~~~l~~~~~-----~i~v~TVd~fQG~E~dvI 573 (646)
T 4b3f_X 502 EDEQSKGNPGEVRLVSLHIQALVDAGV---PARDIAVVSPYNLQVDLLRQSLVHRHP-----ELEIKSVDGFQGREKEAV 573 (646)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHTC---CGGGEEEEESCHHHHHHHHHHHTTTCT-----TCEEEEGGGGTTCCEEEE
T ss_pred cCCccccCHHHHHHHHHHHHHHHhcCC---CcCcEEEECCCHHHHHHHHHHHHHhCC-----CCEECChhhcccccCCEE
Confidence 377899999999999999999998764 556999999999999999999976532 589999999999999999
Q ss_pred EEeecccCCCCcccccCCCccceecccccceeEEEEeechhhcccchHHHHHHHHHhhCCceeecC
Q 041971 573 IISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAD 638 (1044)
Q Consensus 573 Ils~vrs~~~~~~gfl~~~~RlNVAlTRAk~~liIvG~~~~l~~~~~~w~~li~~~~~~~~~~~~~ 638 (1044)
|+|+||++..+.+||+.|+||+|||+||||++||||||..+|.++ +.|++|+++++++|+++.+-
T Consensus 574 I~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l~~~-~~~~~li~~~~~~g~~~~~~ 638 (646)
T 4b3f_X 574 ILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNH-AFLKTLVEYFTQHGEVRTAF 638 (646)
T ss_dssp EEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHHTTS-HHHHHHHHHHHHSSEEEEGG
T ss_pred EEEeccCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHhcCC-HHHHHHHHHHHHCCCEeeHH
Confidence 999999999999999999999999999999999999999999875 89999999999999987753
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=4e-61 Score=589.85 Aligned_cols=295 Identities=34% Similarity=0.497 Sum_probs=240.5
Q ss_pred HHHhcccCcEEEEcCccchhhccccCCCCCEEEEEcCCCCCchhhhhhccccCccEEEEEcCCCCCCccccccccccccc
Q 041971 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACF 416 (1044)
Q Consensus 337 ~~~~l~~a~vI~~T~ss~~~l~~~~~~~fd~vIIDEAsq~~e~~~lipl~l~~~~~~ILVGD~~QL~P~v~~~~~~~~~~ 416 (1044)
...++..++||+||++++... .+....||+||||||+|++++++++|+.. +++++|+||||+||||++.+..+..+|+
T Consensus 313 ~~~~l~~~~vI~~T~~~~~~~-~l~~~~fd~viIDEAsQ~~e~~~li~l~~-~~~~~ilvGD~~QL~p~v~~~~~~~~gl 390 (624)
T 2gk6_A 313 ERELLMNADVICCTCVGAGDP-RLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGL 390 (624)
T ss_dssp HHHHHHTCSEEEEETGGGGCG-GGTTCCCSEEEETTGGGSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCSCHHHHHHTT
T ss_pred HHHHHhcCCEEEEcChhhcch-hhhcCCCCEEEEecccccCcHHHHHHHHh-cCCeEEEecChhccCCeeecHHHHHcCC
Confidence 345678999999999876532 23446799999999999999998899865 5789999999999999998877778899
Q ss_pred cCcHHHHHHhcCCCccccccccccCccccccccccccCCcccccccccccchhhhccCCC-CCCCceEeecCCCcccc--
Q 041971 417 GRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGP-MYGPYSFINVFGGREEF-- 493 (1044)
Q Consensus 417 ~~Slferl~~~~~~~~~L~~qyR~~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~fi~v~~g~e~~-- 493 (1044)
+.|+|+|+...+.+.++|++||||||+|++|+|..||+|+|.+++....+.......+.+ ...|+.|+++ .|.++.
T Consensus 391 ~~Slferl~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~-~g~~~~~~ 469 (624)
T 2gk6_A 391 SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT-QGQEEIAS 469 (624)
T ss_dssp TSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEEC-CCCEECCT
T ss_pred chhHHHHHHhcCCCcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEEEEEc-CCcceecC
Confidence 999999999888888999999999999999999999999998776554332211011111 1457888887 454443
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhhcccCCccEEEEcccHHHHHHHHHHhccccccC--CCCcEEEcccCCCCCCcccE
Q 041971 494 IEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNS--AGFAVKVMSIDGFQGGEEDL 571 (1044)
Q Consensus 494 ~~~s~~N~~Ea~~v~~lv~~l~~~~~~~~~~~~IgVItpy~~Q~~~i~~~L~~~~~~~--~~~~v~V~TVd~~QG~E~Di 571 (1044)
.+.|+.|..||+.|.+++..+++.+. ...+|||||||++|+..|++.|....... ....+.|+|||+|||+|+|+
T Consensus 470 ~~~s~~N~~Ea~~v~~~v~~l~~~g~---~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dv 546 (624)
T 2gk6_A 470 SGTSYLNRTEAANVEKITTKLLKAGA---KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDF 546 (624)
T ss_dssp TSSCCEEHHHHHHHHHHHHHHHTTTC---CGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEE
T ss_pred CCCCccCHHHHHHHHHHHHHHHHcCC---CCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCE
Confidence 67789999999999999999987643 45699999999999999999986532100 01258999999999999999
Q ss_pred EEEeecccCCCCcccccCCCccceecccccceeEEEEeechhhcccchHHHHHHHHHhhCCceeecC
Q 041971 572 IIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAD 638 (1044)
Q Consensus 572 VIls~vrs~~~~~~gfl~~~~RlNVAlTRAk~~liIvG~~~~l~~~~~~w~~li~~~~~~~~~~~~~ 638 (1044)
||+|+||++..+.+||+.+++|+|||+||||++||||||..+|.++ +.|+.|+++++++||++..+
T Consensus 547 VIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~~-~~~~~li~~~~~~~~~~~~~ 612 (624)
T 2gk6_A 547 IILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQ-PLWNHLLNYYKEQKVLVEGP 612 (624)
T ss_dssp EEEEECC------CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTTS-HHHHHHHHHHHHTTCCCCSC
T ss_pred EEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEEECHHHHccC-hHHHHHHHHHHHCCCEEeCC
Confidence 9999999998778999999999999999999999999999999875 99999999999999998764
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=4.2e-60 Score=590.04 Aligned_cols=295 Identities=34% Similarity=0.497 Sum_probs=246.8
Q ss_pred HHHhcccCcEEEEcCccchhhccccCCCCCEEEEEcCCCCCchhhhhhccccCccEEEEEcCCCCCCccccccccccccc
Q 041971 337 KSFCLKRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACF 416 (1044)
Q Consensus 337 ~~~~l~~a~vI~~T~ss~~~l~~~~~~~fd~vIIDEAsq~~e~~~lipl~l~~~~~~ILVGD~~QL~P~v~~~~~~~~~~ 416 (1044)
...+++.++||++|+++++.. .+....||+||||||+|+++++.++|+.. +.+++|+||||+||||++.+..+..+|+
T Consensus 489 ~~~~l~~a~VI~~T~~~~~~~-~l~~~~fd~viIDEAsQ~~e~~~li~l~~-~~~~~ilvGD~~QLpPvv~s~~a~~~gl 566 (800)
T 2wjy_A 489 ERELLMNADVICCTCVGAGDP-RLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGL 566 (800)
T ss_dssp HHHHHHHCSEEEEETGGGGCT-TTTTCCCSEEEETTGGGSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCCCHHHHHTTT
T ss_pred HHhhhccCCEEEEchhhhCCh-hhhcCCCCEEEEECCCCCCcHHHHHHHHh-cCCeEEEecccccCCCeecchhhhhcCc
Confidence 344678899999999876542 23445799999999999999998888864 5789999999999999998877778899
Q ss_pred cCcHHHHHHhcCCCccccccccccCccccccccccccCCcccccccccccchhhhccCCC-CCCCceEeecCCCcccc--
Q 041971 417 GRSLFERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGP-MYGPYSFINVFGGREEF-- 493 (1044)
Q Consensus 417 ~~Slferl~~~~~~~~~L~~qyR~~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~fi~v~~g~e~~-- 493 (1044)
+.|+|+|+...+.+.++|++||||||+|++|+|..||+|.|.+++....+.......+.+ ...|+.|+++ .|.++.
T Consensus 567 ~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~-~g~e~~~~ 645 (800)
T 2wjy_A 567 SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT-QGQEEIAS 645 (800)
T ss_dssp TSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEEC-CCCCEECS
T ss_pred chHHHHHHHhCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEEc-CCceeecC
Confidence 999999999888888999999999999999999999999998876654432211011111 2457889888 444433
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhhcccCCccEEEEcccHHHHHHHHHHhccccccC--CCCcEEEcccCCCCCCcccE
Q 041971 494 IEHSCRNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVNS--AGFAVKVMSIDGFQGGEEDL 571 (1044)
Q Consensus 494 ~~~s~~N~~Ea~~v~~lv~~l~~~~~~~~~~~~IgVItpy~~Q~~~i~~~L~~~~~~~--~~~~v~V~TVd~~QG~E~Di 571 (1044)
.+.|+.|..||+.|.+++..+++.+. ...+|||||||++|+..|++.|.+..... ....+.|+|||+|||+|+|+
T Consensus 646 ~~~S~~N~~Ea~~V~~~v~~L~~~g~---~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dv 722 (800)
T 2wjy_A 646 SGTSYLNRTEAANVEKITTKLLKAGA---KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDF 722 (800)
T ss_dssp SBSCEECHHHHHHHHHHHHHHHHTTC---CGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEE
T ss_pred CCCcccCHHHHHHHHHHHHHHHHcCC---CcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCE
Confidence 67899999999999999999987653 45699999999999999999986532100 01258999999999999999
Q ss_pred EEEeecccCCCCcccccCCCccceecccccceeEEEEeechhhcccchHHHHHHHHHhhCCceeecC
Q 041971 572 IIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAD 638 (1044)
Q Consensus 572 VIls~vrs~~~~~~gfl~~~~RlNVAlTRAk~~liIvG~~~~l~~~~~~w~~li~~~~~~~~~~~~~ 638 (1044)
||+|+||++..+.+||+.+++|+|||+||||++|+||||..+|..+ +.|+.|+++++++||++.++
T Consensus 723 VIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~~-~~w~~ll~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 723 IILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQ-PLWNHLLNYYKEQKVLVEGP 788 (800)
T ss_dssp EEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTSS-HHHHHHHHHHHHTTCEEESC
T ss_pred EEEEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHhccC-HHHHHHHHHHHHCCCEEeCC
Confidence 9999999998888999999999999999999999999999999865 99999999999999998875
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-60 Score=590.09 Aligned_cols=429 Identities=33% Similarity=0.484 Sum_probs=324.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 23 ~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~-~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
+....||++|++||..++.. ++.+|+||||||||+|++.++..|+. .+.+||+|||||.|++++.+||.+..
T Consensus 356 ~~~~~Ln~~Q~~Av~~~l~~-------~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 356 PNFAQLNSSQSNAVSHVLQR-------PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp TTSCCCCHHHHHHHHHHTTC-------SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHhcC-------CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 34568999999999998864 89999999999999999999999887 68999999999999999999997531
Q ss_pred HHhhhhccccCCCCCCCcEEEecCCccccccchhhHHhHHHHHhhhhhccCCcccchhhHHhhHHHhhhhhhhchhhhhh
Q 041971 102 KESVERDCRDALFFPLGDILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVDFLDNCVSLYHTYIDN 181 (1044)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~ivr~G~~~~~~i~~~l~~~~l~~r~~~l~~~~~~~~~w~~~l~s~i~~L~~~~~~y~~~l~~ 181 (1044)
.+++|+|+..+..+...+...+++..+...
T Consensus 429 ----------------~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~---------------------------------- 458 (802)
T 2xzl_A 429 ----------------LKVVRLTAKSREDVESSVSNLALHNLVGRG---------------------------------- 458 (802)
T ss_dssp ----------------CCEEECCCGGGTTSCCTTGGGBHHHHHHTT----------------------------------
T ss_pred ----------------ccEEeecccchhhhcchhhhhhHHHHHHhh----------------------------------
Confidence 158999887653333333222222111100
Q ss_pred hhhhhhcccccchhhhhhcccccccccccchhhHHHHHHHHHHhhhhhhHHHhhhcccCCCcccccccHHHHHHHHHHHH
Q 041971 182 ESMKQSEDINGDIIKEKECGKEADVSDVEIKPFLEFVRDRFKCIAAPLRSCIFNFCTRIPKCYIGKDNFHVMATLISLLD 261 (1044)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~l~~~lp~s~~~~~~~~~~~~l~~~l~ 261 (1044)
+.. .+..+.++..
T Consensus 459 -----------------------------------------------------------~~~--------~l~~l~~~~~ 471 (802)
T 2xzl_A 459 -----------------------------------------------------------AKG--------ELKNLLKLKD 471 (802)
T ss_dssp -----------------------------------------------------------CCT--------HHHHHHHHHH
T ss_pred -----------------------------------------------------------cHH--------HHHHHHHHHH
Confidence 000 0000000000
Q ss_pred HHHHhhhhcccchHHHHHHhccccccccchhhhhHHHHHHHhHhhHHHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHhc
Q 041971 262 SFETLLFEDNLVSEELEELLSHSVDEGLSKSIVGIKYLLHKRRSECHFVLRKLQSSFNELNLPSAVEKDLLEDLLKSFCL 341 (1044)
Q Consensus 262 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~li~~~~l 341 (1044)
.. +....++ . +.+... .......++
T Consensus 472 ~~------~~ls~~~-------------------~---------------~~~~~~---------------~~~~~~~~l 496 (802)
T 2xzl_A 472 EV------GELSASD-------------------T---------------KRFVKL---------------VRKTEAEIL 496 (802)
T ss_dssp HH------SCCCHHH-------------------H---------------HHHHHH---------------HHHHHHHHH
T ss_pred hh------ccCCHHH-------------------H---------------HHHHHH---------------HHHHHHHHh
Confidence 00 0000000 0 000000 001234567
Q ss_pred ccCcEEEEcCccchhhccccCCCCCEEEEEcCCCCCchhhhhhccccCccEEEEEcCCCCCCccccccccccccccCcHH
Q 041971 342 KRASLFLSTASSSYMLHSVAMEPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLF 421 (1044)
Q Consensus 342 ~~a~vI~~T~ss~~~l~~~~~~~fd~vIIDEAsq~~e~~~lipl~l~~~~~~ILVGD~~QL~P~v~~~~~~~~~~~~Slf 421 (1044)
+.++||++|+.++... .+.. .||+||||||+|+++++.++|+.. +++++|+||||+||||++.+..+...+++.|+|
T Consensus 497 ~~a~VI~~T~~~~~~~-~L~~-~fd~viIDEA~q~~e~~~li~l~~-~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slf 573 (802)
T 2xzl_A 497 NKADVVCCTCVGAGDK-RLDT-KFRTVLIDESTQASEPECLIPIVK-GAKQVILVGDHQQLGPVILERKAADAGLKQSLF 573 (802)
T ss_dssp HTCSEEEEETTGGGCT-TCCS-CCSEEEETTGGGSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHH
T ss_pred ccCCEEEechhhcChH-HHhc-cCCEEEEECccccchHHHHHHHHh-CCCEEEEEeCccccCCeechhhhhhcCCchhHH
Confidence 8899999999876532 2333 899999999999999998888864 578999999999999999887777889999999
Q ss_pred HHHHhcCCCccccccccccCccccccccccccCCcccccccccccchhhhccCCC-CCCCceEeecCCCcccc--ccccc
Q 041971 422 ERLSYLGYSKHLLSIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGP-MYGPYSFINVFGGREEF--IEHSC 498 (1044)
Q Consensus 422 erl~~~~~~~~~L~~qyR~~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~fi~v~~g~e~~--~~~s~ 498 (1044)
+|+...+...++|++||||||+|++|+|..||+|+|.+++....+.......+.+ ...|+.|+++ .|.++. .++|+
T Consensus 574 erl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~-~g~~~~~~~~~s~ 652 (802)
T 2xzl_A 574 ERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWAN-YGREEISANGTSF 652 (802)
T ss_dssp HHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEEC-CCCCEECTTSSSE
T ss_pred HHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEEc-CCceeecCCCCCc
Confidence 9999888888999999999999999999999999998876654432211011111 1457888887 444443 67789
Q ss_pred ccHHHHHHHHHHHHHHHHhhhcccCCccEEEEcccHHHHHHHHHHhcccccc--CCCCcEEEcccCCCCCCcccEEEEee
Q 041971 499 RNMVEVSVVMKILLNLYKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYVN--SAGFAVKVMSIDGFQGGEEDLIIIST 576 (1044)
Q Consensus 499 ~N~~Ea~~v~~lv~~l~~~~~~~~~~~~IgVItpy~~Q~~~i~~~L~~~~~~--~~~~~v~V~TVd~~QG~E~DiVIls~ 576 (1044)
.|..||+.|++++..|.+.+. ...+|||||||++|+..|++.|.+.... .....+.|+|||+|||+|+|+||+|+
T Consensus 653 ~N~~EA~~V~~~v~~L~~~g~---~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~ 729 (802)
T 2xzl_A 653 LNRIEAMNCERIITKLFRDGV---KPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSC 729 (802)
T ss_dssp ECHHHHHHHHHHHHHHHHTTC---CGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHcCC---CcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEe
Confidence 999999999999999987653 4569999999999999999998653110 00125899999999999999999999
Q ss_pred cccCCCCcccccCCCccceecccccceeEEEEeechhhcccchHHHHHHHHHhhCCceeecC
Q 041971 577 VRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAD 638 (1044)
Q Consensus 577 vrs~~~~~~gfl~~~~RlNVAlTRAk~~liIvG~~~~l~~~~~~w~~li~~~~~~~~~~~~~ 638 (1044)
||++..+.+||+.+++|+|||+||||++||||||..+|.++ +.|+.|+++++++||++.++
T Consensus 730 vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~~-~~w~~ll~~~~~~~~~~~~~ 790 (802)
T 2xzl_A 730 VRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARN-TLWNHLLIHFREKGCLVEGT 790 (802)
T ss_dssp CCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTTS-HHHHHHHHHHHHHTCEEEEE
T ss_pred ccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhccC-hHHHHHHHHHHHcCCeecCC
Confidence 99998888999999999999999999999999999999874 99999999999999998874
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.94 E-value=2.1e-27 Score=286.62 Aligned_cols=200 Identities=16% Similarity=0.168 Sum_probs=129.8
Q ss_pred CCCEEEEEcCCCCCchhhhhhcc-ccCccEEEEEcCCCCCCccccccccccccccCcHHHHHHhcCCCccccccccccC-
Q 041971 364 PLNFLVIDEAAQLKESESTIPLQ-LSGIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRMH- 441 (1044)
Q Consensus 364 ~fd~vIIDEAsq~~e~~~lipl~-l~~~~~~ILVGD~~QL~P~v~~~~~~~~~~~~Slferl~~~~~~~~~L~~qyR~~- 441 (1044)
++|+||||||++++...+...+. ++...++|+|||+.||||+.. .+.|..+.. ..+.+.|+++||++
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~----------g~~~~~l~~-~~~~~~L~~~~R~~~ 347 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDA----------GLPLLALAQ-AAPTIKLTQVYRQAA 347 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSS----------CCHHHHHHH-HSCEEECCCCCHHHH
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccC----------CcHHHHHHh-cCCEEEcceeEeCCC
Confidence 58999999999999775433332 234579999999999999864 246666666 78899999999998
Q ss_pred -ccccccccccccCCcccccccccccchhhhccCCCCCCCceEeecCCCcccccccccccHHHHHHHHHHHHHHHHhhhc
Q 041971 442 -PSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWID 520 (1044)
Q Consensus 442 -p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~fi~v~~g~e~~~~~s~~N~~Ea~~v~~lv~~l~~~~~~ 520 (1044)
+.|..+++. +..|.+.... ..+.|+..... + ..+..+.+++. +.
T Consensus 348 ~s~I~~~a~~-i~~g~~~~~~-----------------~d~~~~~~~~~-~----------~~~~~i~~~~~-----~~- 392 (574)
T 3e1s_A 348 KNPIIQAAHG-LLHGEAPAWG-----------------DKRLNLTEIEP-D----------GGARRVALMVR-----EL- 392 (574)
T ss_dssp TCHHHHHHHH-HHTTCCCCCC-----------------BTTEEEEECCS-T----------TCHHHHHHHHH-----HT-
T ss_pred ccHHHHHHHH-HhCCCCcccC-----------------CCeEEEeCCCH-H----------HHHHHHHHHHh-----cc-
Confidence 778888764 4444432110 12344433111 1 11233444433 11
Q ss_pred ccCCccEEEEcccHHH---HHHHHHHhccccccC---------------------------------------CCCcE--
Q 041971 521 SKEKLSIGIVSPYSAQ---VVAIQEKLGSKYVNS---------------------------------------AGFAV-- 556 (1044)
Q Consensus 521 ~~~~~~IgVItpy~~Q---~~~i~~~L~~~~~~~---------------------------------------~~~~v-- 556 (1044)
....++.|+||.+.. +..+...+++.+... ....+
T Consensus 393 -~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~v 471 (574)
T 3e1s_A 393 -GGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTV 471 (574)
T ss_dssp -TSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEEE
T ss_pred -CcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEEE
Confidence 122588899987754 343333332211000 00001
Q ss_pred --------------------EEcccCCCCCCcccEEEEeecccCCCCcccccCCCccceecccccceeEEEEeechhhc
Q 041971 557 --------------------KVMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRARHCLWILGNARTLT 615 (1044)
Q Consensus 557 --------------------~V~TVd~~QG~E~DiVIls~vrs~~~~~~gfl~~~~RlNVAlTRAk~~liIvG~~~~l~ 615 (1044)
.+.|||++||+|+|.||+.+..+. ..+.+++++|||+||||+.++|||+...|.
T Consensus 472 ~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l~ 545 (574)
T 3e1s_A 472 DFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAWQ 545 (574)
T ss_dssp EETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHHH
T ss_pred EECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEEEEEECHHHHH
Confidence 136999999999999999987653 245689999999999999999999987653
No 6
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.93 E-value=1.4e-24 Score=268.41 Aligned_cols=150 Identities=16% Similarity=0.117 Sum_probs=101.0
Q ss_pred CCCEEEEEcCCCCCchhhhhhcccc-CccEEEEEcCCCCCCccccccccccccccCcHHHHHHhc--CCCcccccccccc
Q 041971 364 PLNFLVIDEAAQLKESESTIPLQLS-GIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL--GYSKHLLSIQYRM 440 (1044)
Q Consensus 364 ~fd~vIIDEAsq~~e~~~lipl~l~-~~~~~ILVGD~~QL~P~v~~~~~~~~~~~~Slferl~~~--~~~~~~L~~qyR~ 440 (1044)
.|++|+|||++++++.+.-+...+. ...++++|||++|- +....|-+...|.++... +...+.|+.|||+
T Consensus 213 ~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vGD~~Qs-------Iy~frga~~~~~~~~~~~~~~~~~~~L~~nyRs 285 (647)
T 3lfu_A 213 RFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQS-------IYGWRGAQVENIQRFLNDFPGAETIRLEQNYRS 285 (647)
T ss_dssp HCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEECGGGC-------CCGGGTCCTTHHHHHHHHCTTCEEEEECBCSSS
T ss_pred hCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEcCchhh-------hccccCCCHHHHHHHHHhCCCCeEEEcccCCCC
Confidence 4899999999999988755443332 45799999999993 223334456677766553 3456789999999
Q ss_pred CccccccccccccCCcccccccccccchhhhccCCCCCCCceEeecCCCcccccccccccHHHHHHHHHHHHHHHHhhhc
Q 041971 441 HPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWID 520 (1044)
Q Consensus 441 ~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~fi~v~~g~e~~~~~s~~N~~Ea~~v~~lv~~l~~~~~~ 520 (1044)
+|.|.+++|..|+.+.......... ..+...++.++.. .....|+..|++.+..+++.+
T Consensus 286 ~~~I~~~~n~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----------~~~~~e~~~ia~~I~~l~~~g-- 344 (647)
T 3lfu_A 286 TSNILSAANALIENNNGRLGKKLWT--------DGADGEPISLYCA-----------FNELDEARFVVNRIKTWQDNG-- 344 (647)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCCBC--------SSCCCCCEEEEEE-----------EEHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHhcccccCCcccc--------CCCCCCceEEEec-----------CChHHHHHHHHHHHHHHHHcC--
Confidence 9999999999998654321111100 0011123444333 113579999999999988764
Q ss_pred ccCCccEEEEcccHHHHHHHHH
Q 041971 521 SKEKLSIGIVSPYSAQVVAIQE 542 (1044)
Q Consensus 521 ~~~~~~IgVItpy~~Q~~~i~~ 542 (1044)
....+|+||++++.|...+..
T Consensus 345 -~~~~diaVL~r~~~~~~~l~~ 365 (647)
T 3lfu_A 345 -GALAECAILYRSNAQSRVLEE 365 (647)
T ss_dssp -CCGGGEEEEESSGGGHHHHHH
T ss_pred -CCccCEEEEEeCchhHHHHHH
Confidence 356799999999877655444
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.92 E-value=4.9e-25 Score=260.82 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=64.3
Q ss_pred cCcCccccccCCCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCC-cEEEEcCCHHH
Q 041971 11 QSEGVWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF-RTLVCTPTNVA 89 (1044)
Q Consensus 11 ~~~~~~~~~~~~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~-rILv~A~TN~A 89 (1044)
.+..+|..++.+.....||+.|++|+..++..+.. ..++.+|.||||||||+++.+++..|...+. +|+++||||.|
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~A 86 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAA 86 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHHS--SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHH
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHhc--CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHH
Confidence 34667888887777889999999999988765332 2359999999999999999999999999887 89999999999
Q ss_pred HHHHHHHH
Q 041971 90 IKELAARV 97 (1044)
Q Consensus 90 Vd~v~~rL 97 (1044)
++++.+++
T Consensus 87 a~~l~~~~ 94 (459)
T 3upu_A 87 KKILSKLS 94 (459)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99988776
No 8
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.89 E-value=7.3e-23 Score=255.15 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=97.4
Q ss_pred CCCEEEEEcCCCCCchhhhhhccccC-ccEEEEEcCCCCCCccccccccccccccCcHHHHHHhc--CCCcccccccccc
Q 041971 364 PLNFLVIDEAAQLKESESTIPLQLSG-IKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL--GYSKHLLSIQYRM 440 (1044)
Q Consensus 364 ~fd~vIIDEAsq~~e~~~lipl~l~~-~~~~ILVGD~~QL~P~v~~~~~~~~~~~~Slferl~~~--~~~~~~L~~qyR~ 440 (1044)
.|++|+|||+++.+..+..+.-.+.+ ..++++|||++|-- ....|-+...|.++... +...+.|..|||+
T Consensus 216 rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~QsI-------Y~fRGA~~~~~~~f~~~~~~~~~i~L~~NyRS 288 (724)
T 1pjr_A 216 KFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSI-------YRWRGADIQNILSFERDYPNAKVILLEQNYRS 288 (724)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGGGCC-------CGGGTCCTHHHHTHHHHSTTCEEEEECBCSSS
T ss_pred hCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEEEEECchhhc-------ccccCCCHHHHHHHHHHCCCCcEEECCCCCCC
Confidence 58999999999999987554333323 36899999999941 12223334444444332 3456889999999
Q ss_pred CccccccccccccCCcccccccccccchhhhccCCCCCCCceEeecCCCcccccccccccHHHHHHHHHHHHHHHHhhhc
Q 041971 441 HPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWID 520 (1044)
Q Consensus 441 ~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~fi~v~~g~e~~~~~s~~N~~Ea~~v~~lv~~l~~~~~~ 520 (1044)
++.|.+++|..|.++.-....... ...+...++.++.. .....|+.+|+..+..++...
T Consensus 289 t~~Il~~an~li~~n~~~~~k~l~--------~~~~~g~~i~~~~~-----------~~~~~Ea~~va~~I~~l~~~~-- 347 (724)
T 1pjr_A 289 TKRILQAANEVIEHNVNRKPKRIW--------TENPEGKPILYYEA-----------MNEADEAQFVAGRIREAVERG-- 347 (724)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCCB--------CSSCCCCCEEEEEE-----------EEHHHHHHHHHHHHHHHHTTT--
T ss_pred CHHHHHHHHHHHHhCccccCcccc--------cccCCCCceEEEec-----------CCHHHHHHHHHHHHHHHHHhc--
Confidence 999999999888754322111100 00111123444332 113578999999998887521
Q ss_pred ccCCccEEEEcccHHHHHHHHHHh
Q 041971 521 SKEKLSIGIVSPYSAQVVAIQEKL 544 (1044)
Q Consensus 521 ~~~~~~IgVItpy~~Q~~~i~~~L 544 (1044)
.....+|+||++.++|...+.+.|
T Consensus 348 g~~~~diAIL~R~~~~~~~le~~L 371 (724)
T 1pjr_A 348 ERRYRDFAVLYRTNAQSRVMEEML 371 (724)
T ss_dssp SCCGGGEEEEESSGGGHHHHHHHH
T ss_pred CCChhheeeeeecchhHHHHHHHH
Confidence 134569999999988876655443
No 9
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.89 E-value=4.4e-23 Score=251.44 Aligned_cols=66 Identities=36% Similarity=0.444 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh----CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ----MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~----~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
++.|+.|+..++.. ++.+|+||||||||+|++.++..+.. .+.+|+++|||+.|++++.+.+....
T Consensus 151 ~~~Q~~Ai~~~l~~-------~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTR-------RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTB-------SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcC-------CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 78999999999875 89999999999999999999999884 46799999999999999888876543
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=1.6e-22 Score=250.64 Aligned_cols=146 Identities=14% Similarity=0.006 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCCCCCchhhhhhcccc-CccEEEEEcCCCCCCccccccccccccccCcHHHHHHhc--CCCccccccccc
Q 041971 363 EPLNFLVIDEAAQLKESESTIPLQLS-GIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYL--GYSKHLLSIQYR 439 (1044)
Q Consensus 363 ~~fd~vIIDEAsq~~e~~~lipl~l~-~~~~~ILVGD~~QL~P~v~~~~~~~~~~~~Slferl~~~--~~~~~~L~~qyR 439 (1044)
..|++|+|||+++.+..+.-+.-.+. ...++++|||++|- +....|-+...|.++... +...+.|+.+||
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~vGD~~Qs-------Iy~frga~~~~~~~~~~~~~~~~~~~L~~nyR 278 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQS-------IYSWRGARPQNLVLLSQDFPALKVIKLEQNYR 278 (673)
T ss_dssp TTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEEECCGGGC-------CCGGGTBCTTHHHHHHHHSTTCEEECCCCBSS
T ss_pred hhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEEEeCchhh-------hhhccCCCHHHHHHHHHhCCCCeEEECCCCCC
Confidence 46999999999999988754433332 24689999999994 222334445566666542 345688999999
Q ss_pred cCccccccccccccCCcccccccccccchhhhccCCCCCCCceEeecCCCcccccccccccHHHHHHHHHHHHHHHH-hh
Q 041971 440 MHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYK-AW 518 (1044)
Q Consensus 440 ~~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~fi~v~~g~e~~~~~s~~N~~Ea~~v~~lv~~l~~-~~ 518 (1044)
+++.|.+++|..|..+.-....... ...+...++.++... ....|+..|+..+..++. .+
T Consensus 279 s~~~I~~~an~~~~~~~~~~~~~l~--------~~~~~g~~i~~~~~~-----------~~~~e~~~va~~I~~l~~~~g 339 (673)
T 1uaa_A 279 SSGRILKAANILIANNPHVFEKRLF--------SELGYGAELKVLSAN-----------NEEHEAERVTGELIAHHFVNK 339 (673)
T ss_dssp SCHHHHHHHHHHHHTSCCSSCCCCC--------BSSCCCCCBEEEECS-----------SHHHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHhchhccccccc--------ccCCCCCCceEEecC-----------CHHHHHHHHHHHHHHHHhccC
Confidence 9999999999888654311100000 000111233343331 135789999999888873 32
Q ss_pred hcccCCccEEEEcccHHHH
Q 041971 519 IDSKEKLSIGIVSPYSAQV 537 (1044)
Q Consensus 519 ~~~~~~~~IgVItpy~~Q~ 537 (1044)
....+|+||++.+.|.
T Consensus 340 ---~~~~diaVL~r~~~~~ 355 (673)
T 1uaa_A 340 ---TQYKDYAILYRGNHQS 355 (673)
T ss_dssp ---CCTTTEEEEESSSGGG
T ss_pred ---CCccCEEEEEechhhH
Confidence 3456788887665443
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.82 E-value=4.8e-20 Score=211.86 Aligned_cols=199 Identities=19% Similarity=0.167 Sum_probs=127.6
Q ss_pred CCCEEEEEcCCCCCchhhhhhccccCccEEEEEcCCCCCCccccccccccccccCc-HHHHHHhcCCCccccccccccCc
Q 041971 364 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSNEACFGRS-LFERLSYLGYSKHLLSIQYRMHP 442 (1044)
Q Consensus 364 ~fd~vIIDEAsq~~e~~~lipl~l~~~~~~ILVGD~~QL~P~v~~~~~~~~~~~~S-lferl~~~~~~~~~L~~qyR~~p 442 (1044)
.+|+||||||++++...+...+...++.++|++||+.||||+...+. +... -|.++. ......+..+|||++
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~~-----~~~~~~~~~l~--~~~~~~~~~SyR~p~ 306 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTG-----FPYPAHFAKLE--VDEVETRRTTLRCPA 306 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCSTT-----CCCCHHHHSCC--CSEEEEECEESSCCH
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCCC-----ccchhhhhhcc--cCcEEEeeeEeCCCH
Confidence 48999999999998776544444446699999999999999976431 2211 122221 123456889999999
Q ss_pred cccccccccccCCcccccccccccchhhhccCCCCCCCceEeecCCCcccccccccccHHHHHHHHHHHHHHHHhhhccc
Q 041971 443 SISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKAWIDSK 522 (1044)
Q Consensus 443 ~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~fi~v~~g~e~~~~~s~~N~~Ea~~v~~lv~~l~~~~~~~~ 522 (1044)
.++.+.+.. |++.+...... ...+.+..+ .+... ++. ...
T Consensus 307 dv~~lLs~l-Y~~~V~t~s~~--------------~~sv~~~~I-~~~~~------~~~------------------~~~ 346 (446)
T 3vkw_A 307 DVTHFLNQR-YEGHVMCTSSE--------------KKSVSQEMV-SGAAS------INP------------------VSK 346 (446)
T ss_dssp HHHHHHHTT-SSSCCEECCCC--------------CCCEEEEEC-CCGGG------CCT------------------TTS
T ss_pred HHHHHHHhh-cCCceEECCCc--------------CceEEEecc-ccccc------ccc------------------ccC
Confidence 999999975 77665421111 123333333 11110 000 000
Q ss_pred CCccEEEEcccHHHHHHHHHHhccccccCCCCcEE-EcccCCCCCCcccEEEEeecccCCCCcccccCCCccceeccccc
Q 041971 523 EKLSIGIVSPYSAQVVAIQEKLGSKYVNSAGFAVK-VMSIDGFQGGEEDLIIISTVRSNNGGSIGFLSNSKRVNVALTRA 601 (1044)
Q Consensus 523 ~~~~IgVItpy~~Q~~~i~~~L~~~~~~~~~~~v~-V~TVd~~QG~E~DiVIls~vrs~~~~~~gfl~~~~RlNVAlTRA 601 (1044)
+. .--|||+..+.+..+.+. ++. +.|||++||.|+|.|.+-...+. ....|..++.+++||+|||
T Consensus 347 ~~-~g~iLtftq~~k~~L~~~-----------G~~~~~Tv~e~QG~tf~~Vtlvr~~~~--~~~l~~~~~~~~~VALTRh 412 (446)
T 3vkw_A 347 PL-KGKILTFTQSDKEALLSR-----------GYADVHTVHEVQGETYADVSLVRLTPT--PVSIIARDSPHVLVSLSRH 412 (446)
T ss_dssp CC-CSEEEESSHHHHHHHHTT-----------TCCSCEETGGGTTCCEEEEEEEECCCS--CCTTCSTTCHHHHHHHSSE
T ss_pred CC-CCeEEEcCHHHHHHHHHh-----------CCCCccCHHHcCCcccCeEEEEECCCC--CcccccCCccceEEEeecC
Confidence 11 235778888777776542 133 89999999999999988544322 2233445788999999999
Q ss_pred ceeEEEEeechhhcccchHHHHHHHHHh
Q 041971 602 RHCLWILGNARTLTRKKSVWEALVHDAN 629 (1044)
Q Consensus 602 k~~liIvG~~~~l~~~~~~w~~li~~~~ 629 (1044)
|+.|.++.=. ++.|-+.|.++.
T Consensus 413 ~~~L~~~tv~------~D~~~~~i~~~~ 434 (446)
T 3vkw_A 413 TKSLKYYTVV------MDPLVSIIRDLE 434 (446)
T ss_dssp EEEEEEEESS------CCHHHHHHHHHH
T ss_pred CCEEEEEEec------CChHHHHHHHhh
Confidence 9999998531 356777777664
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.80 E-value=2e-19 Score=235.76 Aligned_cols=72 Identities=26% Similarity=0.317 Sum_probs=60.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCC------cEEEEcCCHHHHHHHHHH
Q 041971 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF------RTLVCTPTNVAIKELAAR 96 (1044)
Q Consensus 23 ~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~------rILv~A~TN~AVd~v~~r 96 (1044)
+....||++|++||... .+..+|.|+||||||+|++..+..++..+. +||++|+||.|+.+|.+|
T Consensus 6 ~~~~~~t~eQ~~~i~~~---------~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~r 76 (1232)
T 3u4q_A 6 PADSTWTDDQWNAIVST---------GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHR 76 (1232)
T ss_dssp ----CCCHHHHHHHHCC---------SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhCC---------CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHH
Confidence 34568999999999743 368999999999999999999999987753 899999999999999999
Q ss_pred HHHHHHH
Q 041971 97 VVKLVKE 103 (1044)
Q Consensus 97 L~~~~~~ 103 (1044)
+.+.+..
T Consensus 77 i~~~l~~ 83 (1232)
T 3u4q_A 77 IAEALEK 83 (1232)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.65 E-value=1.6e-14 Score=188.90 Aligned_cols=172 Identities=13% Similarity=0.065 Sum_probs=97.0
Q ss_pred CCCEEEEEcCCCCCchhhhhhcccc---CccEEEEEcCCCCCCccccccccccccccCcHHHHHHhcCCCcccccccccc
Q 041971 364 PLNFLVIDEAAQLKESESTIPLQLS---GIKHAVLFGDECQLPAMVESKVSNEACFGRSLFERLSYLGYSKHLLSIQYRM 440 (1044)
Q Consensus 364 ~fd~vIIDEAsq~~e~~~lipl~l~---~~~~~ILVGD~~QL~P~v~~~~~~~~~~~~Slferl~~~~~~~~~L~~qyR~ 440 (1044)
.|++|+|||+++.+..+.-+.-.+. +...+++|||++|-- ....|-+...|.++.......+.|..|||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQSI-------Y~FRGAd~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAI-------YAFRGADIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCC-------CGGGTCCHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCcccc-------ccCcCCCHHHHHHHHHhcCCceeCCCCcCC
Confidence 5899999999999998755433322 236899999999931 111122222233333322456889999999
Q ss_pred CccccccccccccCCccc---c-c--ccccccch-hhh-c-cCCCCCCCceEeecCCCcccccccccccHHHHHHHHHHH
Q 041971 441 HPSISCFPNSYFYENKIR---D-S--STVRKRSY-EKR-F-LHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKIL 511 (1044)
Q Consensus 441 ~p~I~~~~n~~fY~~~L~---~-~--~~~~~~~~-~~~-~-~~~~~~~~~~fi~v~~g~e~~~~~s~~N~~Ea~~v~~lv 511 (1044)
+|.|.+++|..|-...-. . . ..+..... ... + ..+....++.++.... +. .+.......|+..|+..|
T Consensus 450 ~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~~~~~~~~ea~~iA~~I 526 (1180)
T 1w36_B 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG--ES-CGVGDYQSTMAQVCAAQI 526 (1180)
T ss_dssp CHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCS--SC-CCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCC--Cc-cCcchHHHHHHHHHHHHH
Confidence 999999999877542110 0 0 00000000 000 0 0010011233222111 00 000112346899999999
Q ss_pred HHHHHhhh------------cccCCccEEEEcccHHHHHHHHHHhc
Q 041971 512 LNLYKAWI------------DSKEKLSIGIVSPYSAQVVAIQEKLG 545 (1044)
Q Consensus 512 ~~l~~~~~------------~~~~~~~IgVItpy~~Q~~~i~~~L~ 545 (1044)
..++..+. .....++|+||++.+.|...|.+.|.
T Consensus 527 ~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L~ 572 (1180)
T 1w36_B 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALT 572 (1180)
T ss_dssp HHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHHH
Confidence 88887521 12345799999999998888877664
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.31 E-value=2.5e-12 Score=131.33 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=99.4
Q ss_pred ccccccCccccccccccccCCcccccccccccchhhhccCCCCCCCceEeecCCCcccccccccccHHHHHHHHHHHHHH
Q 041971 435 SIQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 514 (1044)
Q Consensus 435 ~~qyR~~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~fi~v~~g~e~~~~~s~~N~~Ea~~v~~lv~~l 514 (1044)
+.|||++++|.+++|..+.++.- ... ....|+ +..++... ...+|+..|.+.+..
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~-----~~~-----~~~~G~---~p~~~~~~-----------~~~~e~~~i~~~I~~- 56 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEA-----VTA-----FDRQGD---LPNVVVTP-----------NFEAGVDQVVDQLAM- 56 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC------------------CCCC---CCEEEEES-----------SHHHHHHHHHHHHHH-
T ss_pred CCCCCChHHHHHHHHHHhcCCCc-----ccC-----CCCCCC---CCEEEEeC-----------CHHHHHHHHHHHHHH-
Confidence 47999999999999977754420 100 001121 22333331 124688888888877
Q ss_pred HHhhhcccCCccEEEEcccHHHHHHHHHHhccccc------c---CCCCcEEEcccCCCCCCcccEEEEeecccCCCCcc
Q 041971 515 YKAWIDSKEKLSIGIVSPYSAQVVAIQEKLGSKYV------N---SAGFAVKVMSIDGFQGGEEDLIIISTVRSNNGGSI 585 (1044)
Q Consensus 515 ~~~~~~~~~~~~IgVItpy~~Q~~~i~~~L~~~~~------~---~~~~~v~V~TVd~~QG~E~DiVIls~vrs~~~~~~ 585 (1044)
...+ ..+||||++.+.|...+.+.|..... . .....|.|.|+|.++|.|+|.||+..+.... .
T Consensus 57 ~~~g-----~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~---~ 128 (174)
T 3dmn_A 57 NDSE-----RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQEN---Y 128 (174)
T ss_dssp HHHT-----TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTT---S
T ss_pred hccC-----CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCccc---C
Confidence 3332 46999999999999999999976411 0 1123699999999999999999998875542 1
Q ss_pred cccCCCccceecccccceeEEEEeec
Q 041971 586 GFLSNSKRVNVALTRARHCLWILGNA 611 (1044)
Q Consensus 586 gfl~~~~RlNVAlTRAk~~liIvG~~ 611 (1044)
....+++++|||+||||+.|+|++..
T Consensus 129 ~~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 129 QREDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp CSGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred CChhhhceeEEEecCcccEEEEEeCC
Confidence 12456889999999999999999863
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=98.93 E-value=1.4e-08 Score=133.23 Aligned_cols=153 Identities=10% Similarity=0.030 Sum_probs=90.5
Q ss_pred CEEEEEcCCCCCchhhhhhccccC-ccEE--EEEcCCCCCCccccccccccccccCc---HHHHHHh-cCCC---ccccc
Q 041971 366 NFLVIDEAAQLKESESTIPLQLSG-IKHA--VLFGDECQLPAMVESKVSNEACFGRS---LFERLSY-LGYS---KHLLS 435 (1044)
Q Consensus 366 d~vIIDEAsq~~e~~~lipl~l~~-~~~~--ILVGD~~QL~P~v~~~~~~~~~~~~S---lferl~~-~~~~---~~~L~ 435 (1044)
++|+|||+++.+..+.-+.-.+.+ .+++ ++|||+.+.+... .....+++..+ .+.++.. .+++ .+.|.
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~--~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~L~ 280 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREP--HELELFRMTGKTYYRLHQKAKELNLDITYKELSG 280 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCC--CTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCC--CCCCcchhHHHHHHHHHHHHHHcCCCcccceecC
Confidence 799999999999987654433322 3444 4679955432100 00122233222 2333322 2344 57899
Q ss_pred cccccCccccccccccccCCcccccccccccchhhhccCCCCCCCceEeecCCCcccccccccccHHHHHHHHHHHHHHH
Q 041971 436 IQYRMHPSISCFPNSYFYENKIRDSSTVRKRSYEKRFLHGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLY 515 (1044)
Q Consensus 436 ~qyR~~p~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~fi~v~~g~e~~~~~s~~N~~Ea~~v~~lv~~l~ 515 (1044)
.+||+.+.|..+.+..+.... . . ..... ..++.++... .-..|++.|+..+..++
T Consensus 281 ~nyRs~~~il~~i~~~~~~~~--~--~---------~~~~~-~~~i~i~~~~-----------~~~~Ea~~ia~~I~~l~ 335 (1166)
T 3u4q_B 281 TERHTKTPELAHLEAQYEARP--A--I---------PYAEK-QEALTVMQAA-----------NRRAELEGIAREIHALV 335 (1166)
T ss_dssp CSTTTTCHHHHHHHHSSSCSS--C--C---------CCCSC-CSSEEEEEES-----------SHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhHhhcC--C--C---------ccCCC-CCCeEEEEcC-----------ChHHHHHHHHHHHHHHH
Confidence 999999999887765443110 0 0 00011 1233333331 12468999999998888
Q ss_pred HhhhcccCCccEEEEcccH-HHHHHHHHHhccc
Q 041971 516 KAWIDSKEKLSIGIVSPYS-AQVVAIQEKLGSK 547 (1044)
Q Consensus 516 ~~~~~~~~~~~IgVItpy~-~Q~~~i~~~L~~~ 547 (1044)
... .....+|+||++.+ .|...|...|.+.
T Consensus 336 ~~~--g~~~~diAVL~R~~~~~~~~i~~~L~~~ 366 (1166)
T 3u4q_B 336 REK--GYRYKDVAILARQPEDYKDMVKEVFADY 366 (1166)
T ss_dssp HTS--CCCGGGEEEEESCGGGTHHHHHHHHHHT
T ss_pred Hhc--CCChhheEEEeCChHHHHHHHHHHHHHc
Confidence 731 13567999999998 5899999999764
No 16
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.41 E-value=1.9e-06 Score=92.07 Aligned_cols=68 Identities=24% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 22 ~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
......|++.|++|+..++.. .-.+|.||+|+|||.++..++.. .+.++|+++||...+.++.+++.+
T Consensus 88 ~~~~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tG~GKT~~a~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 88 FDAEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCCCCCHHHHHHHHHHTTT-------SEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGG
T ss_pred ccCCCCcCHHHHHHHHHHHhC-------CCEEEEeCCCCCHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 344579999999999987764 44899999999999987766554 388999999999988887777764
No 17
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.01 E-value=2.4e-05 Score=92.21 Aligned_cols=67 Identities=25% Similarity=0.240 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 23 ~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
.....|++.|.+|+..++.. +-.+|.||.|+|||.+...++..+ +.++|+++||...+.+..+++.+
T Consensus 89 ~~~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 89 DAEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCCCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG
T ss_pred cCCCCcCHHHHHHHHHHHhc-------CCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh
Confidence 34568999999999988764 459999999999999877666554 88999999999999888887764
No 18
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.91 E-value=1.9e-05 Score=82.27 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=60.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC------CCcEEEEcCCHHHHHH
Q 041971 19 TFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM------KFRTLVCTPTNVAIKE 92 (1044)
Q Consensus 19 ~~~~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~------~~rILv~A~TN~AVd~ 92 (1044)
..+......|++.|.+|+..++.. .-.+|.||+|||||.+....+..++.. +.++|+++||...+++
T Consensus 25 ~~~~~~~~~l~~~Q~~~i~~~~~~-------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 97 (216)
T 3b6e_A 25 RASPEPELQLRPYQMEVAQPALEG-------KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ 97 (216)
T ss_dssp HTCCSCCCCCCHHHHHHHHHHHTT-------CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHH
T ss_pred ccCccCCCCchHHHHHHHHHHhcC-------CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHH
Confidence 455667789999999999988864 568999999999999988777666543 6799999999999998
Q ss_pred -HHHHHHHH
Q 041971 93 -LAARVVKL 100 (1044)
Q Consensus 93 -v~~rL~~~ 100 (1044)
+.+.+.++
T Consensus 98 ~~~~~~~~~ 106 (216)
T 3b6e_A 98 LFRKEFQPF 106 (216)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHH
Confidence 55555544
No 19
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.82 E-value=4e-05 Score=83.91 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF-RTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~-rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
..|++.|.+|+..++.. +-.+|.+|+|+|||.++..++..++..+. ++|+++||+..+.+..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 58999999999999886 55789999999999998877777666554 9999999999999999998765
No 20
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.80 E-value=5.1e-05 Score=78.53 Aligned_cols=70 Identities=27% Similarity=0.218 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHH------hCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL------QMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll------~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
...+++.|++|+..+++. .-.+|.+|+|||||.+....+...+ ..+.++|+++||...+.++.+++.
T Consensus 21 ~~~~~~~Q~~~i~~~~~~-------~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 21 LTTPTPIQAAALPLALEG-------KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELT 93 (207)
T ss_dssp CCSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCC-------CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 357999999999998875 5699999999999998554444433 246789999999999999999888
Q ss_pred HHH
Q 041971 99 KLV 101 (1044)
Q Consensus 99 ~~~ 101 (1044)
+..
T Consensus 94 ~~~ 96 (207)
T 2gxq_A 94 AVA 96 (207)
T ss_dssp HHC
T ss_pred HHh
Confidence 663
No 21
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.65 E-value=0.00013 Score=77.47 Aligned_cols=70 Identities=20% Similarity=0.131 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHH-HHHHHh------CCCcEEEEcCCHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSML-LVILLQ------MKFRTLVCTPTNVAIKELAARV 97 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~l-l~~Ll~------~~~rILv~A~TN~AVd~v~~rL 97 (1044)
...+++-|++|+..++.. .-.+|.+|+|||||.+.... +..+.. .+.++|+++||...+.++.+++
T Consensus 45 ~~~~~~~Q~~~i~~~~~~-------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQG-------KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp CCBCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-------CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHH
Confidence 457899999999988875 66899999999999976543 334432 4678999999999999999988
Q ss_pred HHHH
Q 041971 98 VKLV 101 (1044)
Q Consensus 98 ~~~~ 101 (1044)
.++.
T Consensus 118 ~~~~ 121 (236)
T 2pl3_A 118 RKVG 121 (236)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7653
No 22
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.62 E-value=0.00012 Score=76.70 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHh--CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQ--MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~--~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..+++-|++|+..++.. .-.+|.+|+|||||.+.. .++..+.. .+.++|+++||...+.++.+++.++.
T Consensus 35 ~~~~~~Q~~~i~~~~~~-------~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEG-------HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhcC-------CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 47999999999988875 568999999999998744 33333332 35689999999999999999887654
No 23
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.57 E-value=0.00017 Score=81.21 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~--~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..|++.|++|+..+++. ....+|.+|+|||||.+....+..++.. +.++|+++||...++++.+++.+..
T Consensus 27 ~~~~~~Q~~~i~~~~~~------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLND------EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp CSCCHHHHHHHHHHHHT------CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC------CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 47999999999998874 2578999999999999877666665543 6799999999999999999988764
No 24
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.57 E-value=0.00016 Score=75.69 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~---~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..+++.|.+|+..+++. .-.+|.+|+|||||.+....+...+.. +.++|+++||...++++.+.+.++.
T Consensus 35 ~~~~~~Q~~~i~~~~~~-------~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 35 EHPSEVQHECIPQAILG-------MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp CCCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 35999999999998875 458999999999998766555544433 3489999999999999999887664
No 25
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.57 E-value=0.00015 Score=75.88 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
...+++-|++|+..+++. .-.+|.+|.|||||.+....+...+. .+.++|+++||...+.++.+++.++.
T Consensus 24 ~~~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 24 FYKPTEIQERIIPGALRG-------ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp CCSCCHHHHHHHHHHHHT-------CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 457899999999998875 56899999999999875544444333 25689999999999999999988765
Q ss_pred H
Q 041971 102 K 102 (1044)
Q Consensus 102 ~ 102 (1044)
.
T Consensus 97 ~ 97 (219)
T 1q0u_A 97 K 97 (219)
T ss_dssp T
T ss_pred h
Confidence 3
No 26
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.56 E-value=0.0001 Score=78.31 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..+++-|.+|+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.++.
T Consensus 51 ~~~~~~Q~~ai~~i~~~-------~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKG-------YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 35999999999998875 56899999999999875544443332 35699999999999999999988664
No 27
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.56 E-value=0.00016 Score=74.81 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..+++-|++|+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.+..
T Consensus 24 ~~~~~~Q~~~i~~~~~~-------~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 24 EKPSPIQEESIPIALSG-------RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHccC-------CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHH
Confidence 47999999999988874 56899999999999765543333322 24589999999999999999887664
No 28
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.56 E-value=0.00022 Score=75.16 Aligned_cols=68 Identities=26% Similarity=0.154 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHH-HHHHHh--------CCCcEEEEcCCHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSML-LVILLQ--------MKFRTLVCTPTNVAIKELAAR 96 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~l-l~~Ll~--------~~~rILv~A~TN~AVd~v~~r 96 (1044)
..+++-|.+|+..+++. .-.+|.+|.|||||.+.... +..+.. .+.++|+++||+..+.++.++
T Consensus 41 ~~~~~~Q~~~i~~~~~~-------~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 113 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQG-------IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAE 113 (228)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHH
Confidence 48999999999988875 56799999999999875443 333321 567899999999999999998
Q ss_pred HHHH
Q 041971 97 VVKL 100 (1044)
Q Consensus 97 L~~~ 100 (1044)
+.++
T Consensus 114 ~~~~ 117 (228)
T 3iuy_A 114 CSKY 117 (228)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 29
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.50 E-value=0.00027 Score=75.34 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh----CCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ----MKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~----~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
...+++-|++|+..++.. .-.+|.+|.|||||.+....+...+. .+.++|+++||...+.++.+++.++
T Consensus 49 ~~~~~~~Q~~~i~~~~~~-------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 49 FQMPTPIQMQAIPVMLHG-------RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CCSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-------CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 346999999999988875 45899999999999985443333333 4568999999999999999998866
Q ss_pred H
Q 041971 101 V 101 (1044)
Q Consensus 101 ~ 101 (1044)
.
T Consensus 122 ~ 122 (245)
T 3dkp_A 122 S 122 (245)
T ss_dssp T
T ss_pred h
Confidence 4
No 30
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.45 E-value=0.00045 Score=73.55 Aligned_cols=72 Identities=18% Similarity=0.078 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHh-------CCCcEEEEcCCHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQ-------MKFRTLVCTPTNVAIKELAAR 96 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~-------~~~rILv~A~TN~AVd~v~~r 96 (1044)
...+++-|.+|+..++.. .-.+|.+|.|||||.+.. .++..+.. .+.++|+++||+..+.++.+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~g-------~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALSG-------LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp CCSCCHHHHHHHHHHHHT-------CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-------CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHH
Confidence 345999999999998875 678999999999998854 44444442 366899999999999999998
Q ss_pred HHHHHHH
Q 041971 97 VVKLVKE 103 (1044)
Q Consensus 97 L~~~~~~ 103 (1044)
+.++...
T Consensus 122 ~~~~~~~ 128 (242)
T 3fe2_A 122 AAEYCRA 128 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877553
No 31
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.42 E-value=0.00025 Score=76.73 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHh------CCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQ------MKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~------~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
.+++-|.+|+..++.. .-.+|+||.|||||.+.. .++..+.. .+.++|+++||...+.++.+++.+
T Consensus 76 ~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 148 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEG-------RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE 148 (262)
T ss_dssp BCCHHHHHHHHHHHHT-------CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 4999999999998875 458999999999999854 44444443 477899999999999999999987
Q ss_pred HHH
Q 041971 100 LVK 102 (1044)
Q Consensus 100 ~~~ 102 (1044)
+..
T Consensus 149 ~~~ 151 (262)
T 3ly5_A 149 LMT 151 (262)
T ss_dssp HTT
T ss_pred HHh
Confidence 643
No 32
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.42 E-value=0.00024 Score=84.44 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF-RTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~-rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
...|++.|.+|+..++.. .-.+|.||.|+|||.+...++..++..+. ++|+++||...+.+..+++.+.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 458999999999999886 56899999999999999877777665554 9999999999999999998654
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.41 E-value=0.00021 Score=82.41 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
.+.+++-|++|+..++.. .-.+|.+|.|||||.+....+..+...+.++|+++||...+.++.+++.++
T Consensus 19 ~~~~~~~Q~~~i~~i~~~-------~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQG-------KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp SSCCCHHHHHHHHHHTTT-------CCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcC-------CCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 457899999999998875 568999999999999655555556678899999999999999999999875
No 34
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.40 E-value=0.00041 Score=74.37 Aligned_cols=71 Identities=23% Similarity=0.226 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHhC--CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQM--KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~~--~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
...+++-|++|+..++.. .-.+|.+|.|||||.+.. .++..+... +.++|+++||...+.++.+++.++.
T Consensus 63 ~~~~~~~Q~~~i~~i~~~-------~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQG-------RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp CCSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-------CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 347999999999998875 668999999999998754 344444444 4579999999999999999988764
Q ss_pred H
Q 041971 102 K 102 (1044)
Q Consensus 102 ~ 102 (1044)
.
T Consensus 136 ~ 136 (249)
T 3ber_A 136 S 136 (249)
T ss_dssp G
T ss_pred c
Confidence 3
No 35
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.39 E-value=0.0005 Score=73.65 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHH-HHHhC-----------CCcEEEEcCCHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLV-ILLQM-----------KFRTLVCTPTNVAIKE 92 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~-~Ll~~-----------~~rILv~A~TN~AVd~ 92 (1044)
...+++-|.+|+..++.. .-.+|.+|.|||||.+....+. .+... +.++|+++||...+.+
T Consensus 43 ~~~~~~~Q~~~i~~i~~~-------~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 43 YQRPTPIQKNAIPAILEH-------RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQ 115 (253)
T ss_dssp CCSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHH
Confidence 346899999999998875 5689999999999987654444 34322 3589999999999999
Q ss_pred HHHHHHHHH
Q 041971 93 LAARVVKLV 101 (1044)
Q Consensus 93 v~~rL~~~~ 101 (1044)
+.+++.++.
T Consensus 116 ~~~~~~~~~ 124 (253)
T 1wrb_A 116 ILSESQKFS 124 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 36
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.39 E-value=0.00039 Score=77.29 Aligned_cols=66 Identities=20% Similarity=0.390 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..|++.|++|+..+++. .-.+|.+|+|+|||.+....+ +..+.++|+++||...+.++.+++.++.
T Consensus 15 ~~l~~~Q~~~i~~i~~~-------~~~lv~~~TGsGKT~~~~~~~---~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQG-------KNVVVRAKTGSGKTAAYAIPI---LELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHH---HHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC-------CCEEEEcCCCCcHHHHHHHHH---HhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 46999999999988864 679999999999998654433 3358899999999999999999988664
No 37
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.33 E-value=0.00041 Score=79.36 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..|++.|++|+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.++.
T Consensus 42 ~~~~~~Q~~~i~~i~~~-------~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAITG-------RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp CSCCHHHHHHHHHHHHT-------CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC-------CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 46999999999998875 45899999999999876555444443 35689999999999999999988664
No 38
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.31 E-value=0.0004 Score=70.31 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcccc--CCCceEEEEccCCCcHHHHHHHHHHHHH-hCCCcEEEEc
Q 041971 29 NDSQAQAVLSCLRQMRCD--HKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCT 84 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~--~~~~i~LI~GPPGTGKT~ti~~ll~~Ll-~~~~rILv~A 84 (1044)
++.|++|+..+..-...- ......+|+|||||||||++.+++..+. ..|..++.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 689999998886542211 2357889999999999999999988887 6677766654
No 39
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.29 E-value=0.00056 Score=72.22 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHH-HHHHHHh--CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSM-LLVILLQ--MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~-ll~~Ll~--~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..+++-|.+|+..++.. .-.+|.+|.|||||.+... ++..+.. .+.++|+++||...+.++.+++.++.
T Consensus 45 ~~~~~~Q~~~i~~~~~~-------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRCG-------LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 35999999999988764 5689999999999987543 3444333 35699999999999999999987653
No 40
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.24 E-value=0.00045 Score=71.22 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhccccC---CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 29 NDSQAQAVLSCLRQMRCDH---KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~---~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
++.|.+|+..+...+.... .+...+|+||||||||+++.++...+...+.+++.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp SHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4467766665544332221 2268999999999999999999998888888887654
No 41
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.22 E-value=0.0006 Score=77.47 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
...+++-|++|+..++.. .+.-.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.++.
T Consensus 25 ~~~~~~~Q~~~i~~~~~~-----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 25 FQKPSKIQERALPLLLHN-----PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp CCSCCHHHHHHHHHHHCS-----SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC-----CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 468999999999988763 2367899999999999987655544443 35689999999999999999888653
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.21 E-value=0.00092 Score=79.79 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=61.4
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-----KFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-----~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
.+.|.+-|.+|+..++.. .-.+|.+|.|+|||.+....+..++.. +.++|+++||...+.+..+.+.+
T Consensus 2 ~~~~~~~Q~~~i~~~~~~-------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKG-------KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCC-------CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 468999999999999865 568999999999999877766666554 77999999999999999999988
Q ss_pred HHHH
Q 041971 100 LVKE 103 (1044)
Q Consensus 100 ~~~~ 103 (1044)
....
T Consensus 75 ~~~~ 78 (555)
T 3tbk_A 75 YFER 78 (555)
T ss_dssp HHHT
T ss_pred Hhcc
Confidence 7653
No 43
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.18 E-value=0.00069 Score=71.86 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHH-HHhCCC----cEEEEcCCHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVI-LLQMKF----RTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~-Ll~~~~----rILv~A~TN~AVd~v~~rL~~ 99 (1044)
..++.+.|.+++..+... ...+|.||.|||||+++...+.. +...+. ++++.+|+...+.++.+++.+
T Consensus 59 ~~p~~~~q~~~i~~i~~g-------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 59 LLPVKKFESEILEAISQN-------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp TSGGGGGHHHHHHHHHHC-------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC-------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 356788899999888775 88999999999999987655444 444443 899999999999999888875
Q ss_pred H
Q 041971 100 L 100 (1044)
Q Consensus 100 ~ 100 (1044)
.
T Consensus 132 ~ 132 (235)
T 3llm_A 132 E 132 (235)
T ss_dssp T
T ss_pred H
Confidence 4
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.17 E-value=0.00038 Score=86.55 Aligned_cols=87 Identities=24% Similarity=0.266 Sum_probs=69.5
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHH
Q 041971 15 VWNETFGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELA 94 (1044)
Q Consensus 15 ~~~~~~~~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~ 94 (1044)
.+...|.....+.|++.|++|+..++..+.. +.+.-.+|+||.|||||.+....+...+..|.++++++||...+.+..
T Consensus 356 ~~~~~~~~~lpf~lt~~Q~~ai~~I~~~l~~-~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 356 KLAEEFIKSLPFKLTNAQKRAHQEIRNDMIS-EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHS-SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhccc-cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH
Confidence 3444444456679999999999998876432 122367999999999999988777777778999999999999999999
Q ss_pred HHHHHHHH
Q 041971 95 ARVVKLVK 102 (1044)
Q Consensus 95 ~rL~~~~~ 102 (1044)
+++.+...
T Consensus 435 ~~l~~~~~ 442 (780)
T 1gm5_A 435 RRTVESFS 442 (780)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99987753
No 45
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.15 E-value=0.00068 Score=77.13 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~---~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..|++.|++|+..++.. .-.+|.+|+|+|||.+....+...+.. +.++|+++||...+.++.+.+.++.
T Consensus 29 ~~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 29 EHPSEVQHECIPQAILG-------MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp CSCCHHHHHHHHHHTTT-------CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC-------CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 35999999999988764 568999999999998765544444332 5589999999999999999887664
No 46
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.14 E-value=0.00069 Score=77.78 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..+++-|++|+..++.. .-.+|.+|.|||||.+....+...+. .+.++|+++||...+.++.+++.++.
T Consensus 58 ~~~~~~Q~~ai~~i~~~-------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKG-------RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 35999999999998875 55899999999999877655544443 46799999999999999999988653
No 47
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.12 E-value=0.00069 Score=77.08 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..|++.|++|+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.+..
T Consensus 42 ~~~~~~Q~~~i~~i~~~-------~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEG-------HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp CSCCHHHHHHHHHHHHT-------CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 48999999999998875 55899999999999875444433332 35699999999999999999887664
No 48
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.11 E-value=0.0011 Score=79.31 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=59.4
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHH
Q 041971 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-----KFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 24 ~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-----~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
..+.|.+-|.+|+..++.. .-.+|.+|.|+|||.+....+..++.. +.++|+++||...+.+..+.+.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~-------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ----CCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC-------CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3578999999999999875 558999999999999877666666655 7799999999999999999998
Q ss_pred HHHHH
Q 041971 99 KLVKE 103 (1044)
Q Consensus 99 ~~~~~ 103 (1044)
+....
T Consensus 77 ~~~~~ 81 (556)
T 4a2p_A 77 HHFER 81 (556)
T ss_dssp HHHGG
T ss_pred HHhcc
Confidence 87653
No 49
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.11 E-value=0.00071 Score=77.60 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
...+++-|++|+..++.. .-.+|.+|.|||||.+....+...+. .+.++|+++||...+.++.+++.++.
T Consensus 60 ~~~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 132 (414)
T 3eiq_A 60 FEKPSAIQQRAILPCIKG-------YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALG 132 (414)
T ss_dssp CCSCCHHHHHHHHHHHTT-------CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHhHHHhCC-------CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHh
Confidence 457899999999988875 45899999999999886555444443 46789999999999999999988764
No 50
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0015 Score=83.77 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 22 ~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
....+.|++-|.+|+..+... .-.+|.+|.|+|||.+....+...+..|.++|+++||...+.+..+++.+..
T Consensus 81 ~~~~f~L~~~Q~eai~~l~~g-------~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 81 RTYPFTLDPFQDTAISCIDRG-------ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CCCSSCCCHHHHHHHHHHHHT-------CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHcC-------CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHh
Confidence 344678999999999998775 6799999999999998876666677889999999999999999999998765
Q ss_pred H
Q 041971 102 K 102 (1044)
Q Consensus 102 ~ 102 (1044)
.
T Consensus 154 ~ 154 (1010)
T 2xgj_A 154 G 154 (1010)
T ss_dssp S
T ss_pred C
Confidence 4
No 51
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.09 E-value=0.00063 Score=79.24 Aligned_cols=71 Identities=24% Similarity=0.160 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 23 ~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~-~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
+..+.|.+.|++++..++. +-.+|.+|+|+|||.++..++..++. .+.++|+++||...+.+..+.+.+..
T Consensus 5 ~~~~~l~~~Q~~~i~~~~~--------~~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 5 RDLIQPRIYQEVIYAKCKE--------TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp HHHHCCCHHHHHHHHHGGG--------SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred cCCCCccHHHHHHHHHHhh--------CCEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 3456899999999988876 26889999999999998877666554 68899999999999999999988663
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.05 E-value=0.0008 Score=86.19 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=64.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 21 GPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 21 ~~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
.....+.|++-|.+|+..++.. .-.+|.||.|+|||.+....+..++..+.++|+++||...+.++.+++.+.
T Consensus 33 ~~~~~f~l~~~Q~~aI~~il~g-------~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 33 ARSWPFELDTFQKEAVYHLEQG-------DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp SCCCSSCCCHHHHHHHHHHHTT-------CEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHHcC-------CCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3455688999999999988875 679999999999999877777777888999999999999999999999865
Q ss_pred H
Q 041971 101 V 101 (1044)
Q Consensus 101 ~ 101 (1044)
.
T Consensus 106 ~ 106 (997)
T 4a4z_A 106 F 106 (997)
T ss_dssp C
T ss_pred c
Confidence 4
No 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0014 Score=84.72 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=64.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 22 PSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 22 ~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
....+.|++-|.+|+..+... .-.+|.||.|+|||.+....+...+..+.++|+++||...+.++.+++.+..
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g-------~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRG-------ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTT-------CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHcC-------CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 345678999999999987654 6789999999999999877777777889999999999999999999998765
Q ss_pred H
Q 041971 102 K 102 (1044)
Q Consensus 102 ~ 102 (1044)
.
T Consensus 252 ~ 252 (1108)
T 3l9o_A 252 G 252 (1108)
T ss_dssp S
T ss_pred C
Confidence 4
No 54
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.99 E-value=0.0014 Score=75.10 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~---~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
...+++-|++|+..++.. .+...+|.+|.|||||.+....+...+.. +.++|+++||...+.++.+++.++.
T Consensus 45 ~~~~~~~Q~~~i~~~~~~-----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 45 FNRPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp CCSCCHHHHHHHHHHHSS-----SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC-----CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 457999999999988863 23678999999999998865444333332 3489999999999999998888664
No 55
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.95 E-value=0.00094 Score=82.92 Aligned_cols=67 Identities=27% Similarity=0.324 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHH-HHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSM-LLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~-ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
..|++.|.+|+..++.. +...+|.||+|+|||+++.. ++..+...+.++++++|+...+.++.+++.
T Consensus 29 ~~l~~~Q~~~i~~~~~~------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLE------GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp CBCCHHHHHHHHTTTTT------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHhcC------CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH
Confidence 38999999999874433 47899999999999999854 444555578999999999999999999984
No 56
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00059 Score=75.65 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh
Q 041971 30 DSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ 75 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~ 75 (1044)
+.|.+.+...+...-....++..+|.||||||||.++..++..|..
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3566666666665444567788999999999999999988877754
No 57
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.92 E-value=0.002 Score=73.87 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=56.0
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHhCC--------------------CcEEEE
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQMK--------------------FRTLVC 83 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~~~--------------------~rILv~ 83 (1044)
...+++-|++|+..++.. .-.+|.+|.|||||.+.. .++..+...+ .++|++
T Consensus 35 ~~~~~~~Q~~~i~~i~~~-------~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 107 (417)
T 2i4i_A 35 YTRPTPVQKHAIPIIKEK-------RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVL 107 (417)
T ss_dssp CCSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEE
T ss_pred CCCCCHHHHHHHHHHccC-------CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEE
Confidence 358999999999988764 668999999999998643 4444444322 579999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 041971 84 TPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 84 A~TN~AVd~v~~rL~~~~ 101 (1044)
+||...+.++.+++.++.
T Consensus 108 ~Pt~~L~~q~~~~~~~~~ 125 (417)
T 2i4i_A 108 APTRELAVQIYEEARKFS 125 (417)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 999999999999988764
No 58
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.87 E-value=0.0017 Score=79.59 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=53.4
Q ss_pred ccCHHHhhhhcC-CCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCceeE
Q 041971 873 EVTDEQLEMILS-PRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPILRQ 951 (1044)
Q Consensus 873 ~lt~~e~~iI~~-~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q 951 (1044)
.|+++|+++|.+ .++++|+|..||||||+++.|+-.. +... ....-+.
T Consensus 9 ~Ln~~Q~~av~~~~~~~lV~a~aGsGKT~~l~~ri~~l-----~~~~--------------------------~~~~~~i 57 (647)
T 3lfu_A 9 SLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWL-----MSVE--------------------------NCSPYSI 57 (647)
T ss_dssp TCCHHHHHHHTCCSSCEEEEECTTSCHHHHHHHHHHHH-----HHTS--------------------------CCCGGGE
T ss_pred cCCHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHHHH-----HHhC--------------------------CCChhhE
Confidence 589999999965 5899999999999999999887432 1110 0112478
Q ss_pred EEEecCHHHHHHHHHHHHHH
Q 041971 952 LFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 952 ~FvT~s~~L~~~v~~~~~~l 971 (1044)
++||.+...+.++++.+.++
T Consensus 58 L~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 58 MAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp EEEESSHHHHHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHHHHH
Confidence 89999999999999988776
No 59
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.81 E-value=0.00071 Score=83.85 Aligned_cols=66 Identities=23% Similarity=0.142 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
..|++-|.+|+....+ +...+|.||+|+|||.++...+...+..+.++++++|+...+.++.+++.
T Consensus 24 ~~l~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFS-------GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp -CCCCCCHHHHHHHTT-------CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC-------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH
Confidence 3899999999998654 37899999999999998865555555578899999999999999999984
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.78 E-value=0.002 Score=83.83 Aligned_cols=81 Identities=22% Similarity=0.197 Sum_probs=65.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 20 FGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 20 ~~~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
+.....+.+++-|.+|+..++..+.. +.+.-.+|.||.|+|||.+....+..++..|.++|+++||...+.+..+++.+
T Consensus 596 ~~~~f~~~~t~~Q~~ai~~il~~~~~-g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 596 FCDSFPFETTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHHHHS-SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHhc-CCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHH
Confidence 33455678999999999999885422 12236899999999999988766667778899999999999999999999986
Q ss_pred HH
Q 041971 100 LV 101 (1044)
Q Consensus 100 ~~ 101 (1044)
.+
T Consensus 675 ~~ 676 (1151)
T 2eyq_A 675 RF 676 (1151)
T ss_dssp HS
T ss_pred Hh
Confidence 64
No 61
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.77 E-value=0.002 Score=71.40 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcccc--CCCceEEEEccCCCcHHHHHHHHHHHHH-hCCCcEEEEc
Q 041971 31 SQAQAVLSCLRQMRCD--HKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCT 84 (1044)
Q Consensus 31 sQ~~AV~~~l~~~~~~--~~~~i~LI~GPPGTGKT~ti~~ll~~Ll-~~~~rILv~A 84 (1044)
.+..++..+..-+... +.....+|+||||||||+++.++...+. ..|.+++.+.
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5555555443332211 1246789999999999999999999999 8898887665
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.77 E-value=0.0016 Score=78.93 Aligned_cols=69 Identities=22% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHH
Q 041971 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM---------KFRTLVCTPTNVAIKELA 94 (1044)
Q Consensus 24 ~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~---------~~rILv~A~TN~AVd~v~ 94 (1044)
....|.+.|.+||..++..+.- ...-.+|.+|.|||||.++..++..++.. +.++|+++||+.-+++..
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~--~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQ--GKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHT--TCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---------
T ss_pred CCCCchHHHHHHHHHHHHHHhc--CCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH
Confidence 3458999999999998874322 12456899999999999988888888874 479999999998887766
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.76 E-value=0.0022 Score=67.31 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+....+++..+... ......+|.||||||||+++..+...+...+.+++.+..
T Consensus 36 ~~~~~~~l~~~~~~----~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 36 NDELIGALKSAASG----DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CHHHHHHHHHHHHT----CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34444445444432 245789999999999999999999998888888877664
No 64
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.76 E-value=0.0027 Score=76.28 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHH-HHHHHHhCC------CcEEEEcCCHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSM-LLVILLQMK------FRTLVCTPTNVAIKELAARV 97 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~-ll~~Ll~~~------~rILv~A~TN~AVd~v~~rL 97 (1044)
...++|-|.+|+..++.. ...-.+|.+|.|||||.+... ++..+...+ .++|+++||...+.++.+++
T Consensus 92 ~~~~~~~Q~~~i~~~l~~-----~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~ 166 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSS-----EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 166 (563)
T ss_dssp CSSCCHHHHHHHHHHHSS-----SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcC-----CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHH
Confidence 346999999999998842 236789999999999987544 444444432 48999999999999999999
Q ss_pred HHHHH
Q 041971 98 VKLVK 102 (1044)
Q Consensus 98 ~~~~~ 102 (1044)
.++..
T Consensus 167 ~~~~~ 171 (563)
T 3i5x_A 167 KKIHD 171 (563)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 65
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.72 E-value=0.002 Score=83.40 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=60.9
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 24 ~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
..+.+++-|++|+..++.. .-.+|++|.|||||.+....+..++..+.++|+++||...+.++.+++.++
T Consensus 75 ~gf~pt~iQ~~ai~~il~g-------~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQG-------KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTT-------CCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHcC-------CCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 3568999999999998875 568999999999999666666666778899999999999999999999874
No 66
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.71 E-value=0.015 Score=71.04 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHHhcccc--CCCceEEEEccCCCcHHHHHHHHHHHHHhCC-------CcEEEEcCCHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCD--HKATIQLIWGPPGTGKTKTVSMLLVILLQMK-------FRTLVCTPTNVAIKELAA 95 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~--~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~-------~rILv~A~TN~AVd~v~~ 95 (1044)
...|-|.|++||...+...... .+..-.++--+.|+|||.++.+++..++..+ .++||++|+ ..+.+-.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 4579999999999877542111 2234467888999999999999999888754 369999997 56666666
Q ss_pred HHHHHH
Q 041971 96 RVVKLV 101 (1044)
Q Consensus 96 rL~~~~ 101 (1044)
.+.+..
T Consensus 132 E~~~~~ 137 (644)
T 1z3i_X 132 EVGKWL 137 (644)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666554
No 67
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.70 E-value=0.0031 Score=76.15 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHH-HHHHHHhC------CCcEEEEcCCHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSM-LLVILLQM------KFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~-ll~~Ll~~------~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
..++|-|.+|+..++.. ...-.+|.+|.|||||.+... ++..+... +.++|+++||...+.++.+.+.
T Consensus 42 ~~~~~~Q~~~i~~il~~-----~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~ 116 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSS-----EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 116 (579)
T ss_dssp SSCCHHHHHHHHHHHCS-----SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcc-----CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHH
Confidence 46999999999998832 236789999999999987544 34344433 3489999999999999999998
Q ss_pred HHHH
Q 041971 99 KLVK 102 (1044)
Q Consensus 99 ~~~~ 102 (1044)
++..
T Consensus 117 ~~~~ 120 (579)
T 3sqw_A 117 KIHD 120 (579)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 68
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.67 E-value=0.0038 Score=78.42 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-----KFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-----~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
...|.+-|.+|+..++.. .-.+|.+|.|+|||.+....+..++.. +.++|+++||...+.+..+.+.+
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC-------CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 678999999999998865 568999999999999877766666655 77999999999999999999988
Q ss_pred HHH
Q 041971 100 LVK 102 (1044)
Q Consensus 100 ~~~ 102 (1044)
...
T Consensus 319 ~~~ 321 (797)
T 4a2q_A 319 HFE 321 (797)
T ss_dssp HHG
T ss_pred hcc
Confidence 765
No 69
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.66 E-value=0.0045 Score=71.95 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHhC-------CCcEEEEcCCHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQM-------KFRTLVCTPTNVAIKELAAR 96 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~~-------~~rILv~A~TN~AVd~v~~r 96 (1044)
...+++-|++|+..+++. .-.++.+|.|||||.... .++..+... +.++|+++||...+.++.+.
T Consensus 76 ~~~pt~iQ~~ai~~i~~g-------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 76 YKIPTPIQKCSIPVISSG-------RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp CCSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcC-------CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHH
Confidence 346899999999988875 678999999999998644 455555543 45899999999999999999
Q ss_pred HHHHH
Q 041971 97 VVKLV 101 (1044)
Q Consensus 97 L~~~~ 101 (1044)
+.++.
T Consensus 149 ~~~~~ 153 (434)
T 2db3_A 149 ARKFA 153 (434)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
No 70
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.65 E-value=0.0027 Score=70.69 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
....+|+||||||||+++.++...+...+.+++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 46799999999999999999999888888888777643
No 71
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.63 E-value=0.0011 Score=82.36 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
..|++-|.+|+..++.. +...+|.||.|+|||.++. .++..+...+.++++++|+..++.++.+++.
T Consensus 22 ~~l~~~Q~~~i~~~~~~------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~ 89 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILE------GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQ 89 (720)
T ss_dssp CBCCHHHHHHHTTTGGG------TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTG
T ss_pred CCCCHHHHHHHHHHhcC------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHH
Confidence 38999999999874433 3789999999999999874 5555566578999999999999999999985
No 72
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.63 E-value=0.0012 Score=81.54 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=59.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCC------CcEEEEcCCHHHHHHH-HH
Q 041971 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK------FRTLVCTPTNVAIKEL-AA 95 (1044)
Q Consensus 23 ~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~------~rILv~A~TN~AVd~v-~~ 95 (1044)
...+.|.+-|.+|+..++.. .-.+|.+|.|+|||.+....+..++..+ .++|+++||...+.+. .+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g-------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~ 75 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEG-------KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 75 (699)
T ss_dssp ----CCCHHHHHHHHHHHSS-------CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHhC-------CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHH
Confidence 34678999999999999874 5699999999999998877776665443 7999999999999999 99
Q ss_pred HHHHHHH
Q 041971 96 RVVKLVK 102 (1044)
Q Consensus 96 rL~~~~~ 102 (1044)
++.+...
T Consensus 76 ~l~~~~~ 82 (699)
T 4gl2_A 76 EFQPFLK 82 (699)
T ss_dssp THHHHHT
T ss_pred HHHHHcC
Confidence 8887754
No 73
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.59 E-value=0.0027 Score=74.64 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCC---CcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK---FRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~---~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
.+++-|.+|+..++.. .+...+|.||.|||||.+....+...+..+ .++|+++||...+.++.+++.++.
T Consensus 114 ~p~~~Q~~ai~~il~~-----~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 114 RPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp SCCHHHHHHHHHHTSB-----SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-----CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 4555599999888762 346799999999999987544333333332 389999999999999988887664
No 74
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.59 E-value=0.0034 Score=63.07 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh-------CCCcEEEEc
Q 041971 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ-------MKFRTLVCT 84 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~-------~~~rILv~A 84 (1044)
.+.+.+.+...+.. ..+...+|.||||||||+++..++..+.. .+.+++.+.
T Consensus 27 ~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 27 RDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp CHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred chHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 34555666555543 33466899999999999999998888866 355555544
No 75
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.54 E-value=0.0013 Score=78.10 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~---~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
.+++.|++|+..+++. .+.-.+|.||.|||||.+....+...+.. +.++|+++|++..++++.+++.+..
T Consensus 141 ~p~~~Q~~ai~~i~~~-----~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~ 213 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN-----PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 213 (508)
T ss_dssp ECCCTTSSSHHHHHCS-----SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHcC-----CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhC
Confidence 5788999999888763 23678999999999999866555544433 3489999999999999999988763
No 76
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.52 E-value=0.0048 Score=68.02 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHhC--CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQM--KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~~--~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
...+++-|.+|+..++.. .+.-.++.+|.|||||.... .++..+... +.++|+++||..-+.++.+.+.++.
T Consensus 112 ~~~pt~iQ~~ai~~il~~-----~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CCSCCHHHHHHHHHHTSS-----SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC-----CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 346788899999888752 23568999999999998743 444444332 3479999999999999988887664
No 77
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.47 E-value=0.0024 Score=65.16 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=34.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
..+.+|.||||+||||++..++..+...|.++++..+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 36899999999999999999999998899999998776
No 78
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.44 E-value=0.0045 Score=79.03 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=59.5
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHH
Q 041971 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-----KFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 24 ~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-----~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
....|.+-|.+|+..++.. .-.+|.+|.|+|||.+....+..++.. +.++|+++||...+.+..+.+.
T Consensus 245 ~~~~~r~~Q~~ai~~il~g-------~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ---CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC-------CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3678999999999999875 568999999999999877666665554 7799999999999999999998
Q ss_pred HHHH
Q 041971 99 KLVK 102 (1044)
Q Consensus 99 ~~~~ 102 (1044)
+...
T Consensus 318 ~~~~ 321 (936)
T 4a2w_A 318 HHFE 321 (936)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 79
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.42 E-value=0.0058 Score=75.37 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC-C----CcEEEEcCCHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM-K----FRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-~----~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
...|.+-|.+|+..++.. .-.+|.+|.|+|||......+...+.. + .++|+++||...+.+..+.+.+
T Consensus 11 ~~~lr~~Q~~~i~~~l~g-------~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKG-------KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHcC-------CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 468999999999998874 568999999999999877666654443 2 7899999999999999998887
Q ss_pred HH
Q 041971 100 LV 101 (1044)
Q Consensus 100 ~~ 101 (1044)
..
T Consensus 84 ~~ 85 (696)
T 2ykg_A 84 YF 85 (696)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 80
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.41 E-value=0.0038 Score=62.54 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh-------CCCcEEEEc
Q 041971 30 DSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ-------MKFRTLVCT 84 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~-------~~~rILv~A 84 (1044)
+.+.+.+...+.. ......+|+||||||||+++..++..+.. .+..++.+.
T Consensus 28 ~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 28 DTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp HHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred hHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 3445555555443 23456799999999999999999888766 355665553
No 81
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.38 E-value=0.0027 Score=70.53 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=63.6
Q ss_pred CcCccccccCCCCC--CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHH
Q 041971 12 SEGVWNETFGPSLS--STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVA 89 (1044)
Q Consensus 12 ~~~~~~~~~~~~~~--~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~A 89 (1044)
....|.+++.+... .--++...+.+...+.. +..+.+.++.||||||||+++.++...+ +..++-+..++..
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~ 85 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK 85 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC
Confidence 45578876654432 34456666777766664 3445678888889999999998886665 6667766655544
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCCcEEEecCCccc
Q 041971 90 IKELAARVVKLVKESVERDCRDALFFPLGDILLLGNNERL 129 (1044)
Q Consensus 90 Vd~v~~rL~~~~~~~~~~~g~~~~~~~~~~ivr~G~~~~~ 129 (1044)
++.+.+.+...... ....+...++.+..-+.+
T Consensus 86 ~~~i~~~~~~~~~~--------~~~~~~~~vliiDEi~~l 117 (324)
T 3u61_B 86 IDFVRGPLTNFASA--------ASFDGRQKVIVIDEFDRS 117 (324)
T ss_dssp HHHHHTHHHHHHHB--------CCCSSCEEEEEEESCCCG
T ss_pred HHHHHHHHHHHHhh--------cccCCCCeEEEEECCccc
Confidence 55555544433221 112223456666666553
No 82
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.36 E-value=0.0025 Score=76.91 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAA 95 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~ 95 (1044)
..++..|.+|+...+.. ..++.+|+|++|+|||+++..+++.+. .+++|||||..|+..+.+
T Consensus 174 ~~~T~dQ~~al~~~~~~-----~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTM-----PPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SSCCHHHHHHHHHHTTC-----CSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHh-----hhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHH
Confidence 37899999999888774 247899999999999988888777764 357999999999985443
No 83
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=96.35 E-value=0.0027 Score=81.99 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHHH
Q 041971 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVK 102 (1044)
Q Consensus 24 ~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~~ 102 (1044)
..+.+ +-|.+|+..++.. .-.+|.||.|||||.....++..+...+.++|+++||...+.++.+++.++..
T Consensus 54 ~g~~p-~iQ~~ai~~il~g-------~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRILRK-------ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp TCSCC-HHHHHHHHHHHTT-------CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred cCCCH-HHHHHHHHHHHhC-------CCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 34557 9999999999875 67899999999999855566666777889999999999999999999987764
No 84
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.35 E-value=0.004 Score=65.88 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
...+.+|.||||+|||+++..++..++..+.++++.+.... ..++.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHH
Confidence 45799999999999999999999988888999988876543 355555554
No 85
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.34 E-value=0.0036 Score=64.45 Aligned_cols=45 Identities=31% Similarity=0.379 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Q 041971 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK 77 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~ 77 (1044)
.+...+.+...+.. ...+..+|.||||||||+++..+...+...+
T Consensus 22 ~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 22 QDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CHHHHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 45666677766664 2233489999999999999998888876554
No 86
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0067 Score=68.78 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC--------CCcEEEEc
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--------KFRTLVCT 84 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~--------~~rILv~A 84 (1044)
.=.+.+.+.+...+........+...+|+||||||||+++..++..+... +..++.+.
T Consensus 23 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 23 PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 33566777777666653333446789999999999999999888887654 66666554
No 87
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.31 E-value=0.0032 Score=66.17 Aligned_cols=38 Identities=32% Similarity=0.285 Sum_probs=34.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
...+.+|.||||+||||.+..++..+...|.+|++..|
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~ 48 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 48 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 45899999999999999999999999999999999865
No 88
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.30 E-value=0.0054 Score=76.48 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHH-hC--CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QM--KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll-~~--~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
.+.|++++..++.. +...+|.||+|+|||+.+..++.... .. |.+|++++|+..++.++.+++.+..
T Consensus 95 ~~~q~~~i~~~l~~------~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~ 164 (773)
T 2xau_A 95 VHAQRDEFLKLYQN------NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEM 164 (773)
T ss_dssp GGGGHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHh
Confidence 44788899888876 46899999999999997665543322 12 6679999999999999998886543
No 89
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.14 E-value=0.0048 Score=75.97 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=52.0
Q ss_pred ccCHHHhhhhcC-CCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCceeE
Q 041971 873 EVTDEQLEMILS-PRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPILRQ 951 (1044)
Q Consensus 873 ~lt~~e~~iI~~-~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q 951 (1044)
.||++|+++|.+ .++++|+|..||||||+++.|+-.. +...+ ...-+.
T Consensus 2 ~L~~~Q~~av~~~~~~~lV~AgaGSGKT~~l~~ri~~l-----l~~~~--------------------------~~~~~I 50 (673)
T 1uaa_A 2 RLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHL-----IRGCG--------------------------YQARHI 50 (673)
T ss_dssp CCCHHHHHHHHCCSSEEEECCCTTSCHHHHHHHHHHHH-----HHHHC--------------------------CCGGGE
T ss_pred CCCHHHHHHHhCCCCCEEEEeCCCCChHHHHHHHHHHH-----HHhcC--------------------------CCHHHe
Confidence 589999999965 6799999999999999999988432 11100 011357
Q ss_pred EEEecCHHHHHHHHHHHHHH
Q 041971 952 LFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 952 ~FvT~s~~L~~~v~~~~~~l 971 (1044)
+.||-+...+.++++.+.++
T Consensus 51 L~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 51 AAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp EEEESSHHHHHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHHHHH
Confidence 88899999999998887765
No 90
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.0059 Score=70.54 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=43.6
Q ss_pred CCCCCHHHH--HHHHHHHHhc-cc-------cCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 25 SSTLNDSQA--QAVLSCLRQM-RC-------DHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 25 ~~~Ln~sQ~--~AV~~~l~~~-~~-------~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
...+++.|. ++|...+..+ .. ...+.+.+|.||||+|||||+..++.++...|.+|++++
T Consensus 66 ~~~~~~~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 66 PAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cccCCcHHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345666553 4555554432 11 123678999999999999999999999999999987665
No 91
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.07 E-value=0.0039 Score=68.49 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=27.2
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
..+...+++||||||||+++.++...+ +..++.++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 345678899999999999998888776 56655554
No 92
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.07 E-value=0.0063 Score=70.85 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC--CCcEEEEcCC
Q 041971 31 SQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPT 86 (1044)
Q Consensus 31 sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~--~~rILv~A~T 86 (1044)
++..|...+..-...+......+|+||||||||+++.++...+... +.+++.+...
T Consensus 112 ~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 112 GNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp TTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred chHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4444554444333333225689999999999999999888888765 6777766543
No 93
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.04 E-value=0.0069 Score=69.89 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCCCCHHHH--HHHHHHHHhc-cc--------cCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 25 SSTLNDSQA--QAVLSCLRQM-RC--------DHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 25 ~~~Ln~sQ~--~AV~~~l~~~-~~--------~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
...+++.|. ++|...+..+ .. ...+.+.++.||||+|||||+..++..+...|.+|++++
T Consensus 62 ~~~~~~~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 62 PSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCChHHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 345776654 5555554432 11 123678999999999999999999999999999997655
No 94
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.03 E-value=0.012 Score=75.45 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=60.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHHHHH
Q 041971 23 SLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKF--RTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 23 ~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~--rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
.....|.|.|.+|+..++.. .++-.++.+|.|+|||.++..++..++..|. ++|+++|+ ..+.+-...+.+.
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~-----~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRR-----HAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHS-----SSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHh-----cCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHH
Confidence 45689999999999998874 2456799999999999999999998888776 99999999 7777777776543
No 95
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.00 E-value=0.0032 Score=64.99 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILL 74 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll 74 (1044)
-+.+|.||||||||+.++.++..++
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~ 30 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDE 30 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999877665543
No 96
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.98 E-value=0.0078 Score=68.06 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Q 041971 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~ 76 (1044)
.+.+.+.+...+...-....+...+|+||||||||+++..+...+...
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 566777777766542223456789999999999999999888887654
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.97 E-value=0.0032 Score=64.85 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+|.||||||||+++.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999998887765
No 98
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.0094 Score=65.80 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=40.2
Q ss_pred cCccccccCCCCCCCC--CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Q 041971 13 EGVWNETFGPSLSSTL--NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76 (1044)
Q Consensus 13 ~~~~~~~~~~~~~~~L--n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~ 76 (1044)
+..|.+.+.+.....+ .+...+.+...+.. +..+..+++||||||||+++..+...+...
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 4467765554333333 45666666666654 222358999999999999999888887544
No 99
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.0094 Score=67.56 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHhccccCCCc--eEEEEccCCCcHHHHHHHHHHHHHhC-CCcEEEEc
Q 041971 28 LNDSQAQAVLSCLRQMRCDHKAT--IQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCT 84 (1044)
Q Consensus 28 Ln~sQ~~AV~~~l~~~~~~~~~~--i~LI~GPPGTGKT~ti~~ll~~Ll~~-~~rILv~A 84 (1044)
=.+.+.+.+...+........+. ..+|.||||||||+++..++..+... +..++.+.
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 35667777777766532223334 89999999999999999888777655 46665544
No 100
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.91 E-value=0.012 Score=62.82 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhcccc--------CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 29 NDSQAQAVLSCLRQMRCD--------HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~--------~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+.+.+.+...+..+... ..+...+|+||||||||+++.++...+ +.+++.+.
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~ 71 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMA 71 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEec
Confidence 345666665554432111 234567999999999999998887654 44444443
No 101
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.89 E-value=0.011 Score=73.45 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=52.9
Q ss_pred ccCHHHhhhhcC-CCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCceeE
Q 041971 873 EVTDEQLEMILS-PRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPILRQ 951 (1044)
Q Consensus 873 ~lt~~e~~iI~~-~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q 951 (1044)
.|+++|+++|.+ .++++|+|..||||||+++.|+-.. +...+ ...-+.
T Consensus 11 ~Ln~~Q~~av~~~~g~~lV~AgAGSGKT~vL~~ri~~l-----l~~~~--------------------------~~p~~I 59 (724)
T 1pjr_A 11 HLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYL-----MAEKH--------------------------VAPWNI 59 (724)
T ss_dssp TSCHHHHHHHHCCSSCEEEEECTTSCHHHHHHHHHHHH-----HHTTC--------------------------CCGGGE
T ss_pred hCCHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHHHH-----HHhcC--------------------------CCHHHe
Confidence 489999999965 5899999999999999999987332 11100 011357
Q ss_pred EEEecCHHHHHHHHHHHHHHH
Q 041971 952 LFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 952 ~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
+.||-+...|.++++.+.++.
T Consensus 60 L~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 60 LAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp EEEESSHHHHHHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHHHHHh
Confidence 888999999999998887763
No 102
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.88 E-value=0.0037 Score=60.89 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCc
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFR 79 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~r 79 (1044)
+...+|+||||||||+++.++.......+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 4668999999999999888776554433443
No 103
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.88 E-value=0.0087 Score=66.39 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=44.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
+...+.+|.|+||+|||+++..++..++..|.++++.+.- ....++..|+...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHH
Confidence 4568999999999999999999999988888899999866 4556777887754
No 104
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.85 E-value=0.033 Score=56.97 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=60.4
Q ss_pred ccHHHHHHHhhhccCCcCcCcc-ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPF-EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf-~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
++..+++.+-.- .| ++++-|.++| ....++++.+..|||||.+.++-++..- .
T Consensus 10 l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~-----~---------- 66 (206)
T 1vec_A 10 LKRELLMGIFEM--------GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL-----D---------- 66 (206)
T ss_dssp CCHHHHHHHHTT--------TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHC-----C----------
T ss_pred CCHHHHHHHHHC--------CCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHh-----c----------
Confidence 567666665431 23 6788898887 4567999999999999998877665420 0
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHh
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKS 973 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~ 973 (1044)
......+.++++....|+.++.+.+.++..
T Consensus 67 -----------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 96 (206)
T 1vec_A 67 -----------------LKKDNIQAMVIVPTRELALQVSQICIQVSK 96 (206)
T ss_dssp -----------------TTSCSCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred -----------------ccCCCeeEEEEeCcHHHHHHHHHHHHHHHh
Confidence 011226899999999999999888887643
No 105
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.82 E-value=0.0072 Score=63.27 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=30.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
..++.||||+||||++..+...+...|.+|+++.-
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 47789999999999999999999999999876554
No 106
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.82 E-value=0.024 Score=59.25 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=60.4
Q ss_pred cccHHHHHHHhhhccCCcCcCcc-ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPF-EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNN 925 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf-~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~ 925 (1044)
.++..++.++..- .| ++++-|.++| ...+++++.+..|||||.+.++-++..-......
T Consensus 26 ~l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--------- 88 (228)
T 3iuy_A 26 QQYPDLLKSIIRV--------GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--------- 88 (228)
T ss_dssp TTCHHHHHHHHHH--------TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC--------------
T ss_pred ccCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch---------
Confidence 3566666666543 22 6888899887 4677999999999999999877654421000000
Q ss_pred ccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHH
Q 041971 926 SVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
.......+.+|++....||.++.+.+.++
T Consensus 89 -----------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 89 -----------------REQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp ---------------------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred -----------------hhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 01112367899999999999999888886
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.81 E-value=0.0066 Score=59.54 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
..|.+...++..+ .....+|+||||||||+++.++...+...|.+++.+..
T Consensus 22 g~n~~~~~~l~~~--------~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 22 TENAELVYVLRHK--------HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CCTHHHHHHCCCC--------CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CccHHHHHHHHhc--------CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 4565555544333 35789999999999999999998888777766665543
No 108
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.80 E-value=0.0075 Score=66.09 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
.+...+++||||||||+++.++...+ +.+++.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i 81 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKV 81 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 35678999999999999998887766 4454444
No 109
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.79 E-value=0.011 Score=61.60 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=38.2
Q ss_pred cCccccccCCCCC--CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHH
Q 041971 13 EGVWNETFGPSLS--STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL 74 (1044)
Q Consensus 13 ~~~~~~~~~~~~~--~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll 74 (1044)
...|...+.+... .--.+...+.+...+.. +..+...+|.||||||||+++..+...+.
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456655443322 23355666777777665 22345899999999999999887766654
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.79 E-value=0.0085 Score=62.53 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=38.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARV 97 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL 97 (1044)
...+.+|.||||+|||+++..++..+...+.+|++.+.... ..++..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~ 70 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQA 70 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHH
Confidence 45799999999999999999999888877888888775442 33444444
No 111
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.76 E-value=0.0087 Score=65.75 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=29.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCC----cEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKF----RTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~----rILv~A~ 85 (1044)
.....+|+||||||||+++.++...+...+. .++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3456899999999999999988888876543 5666554
No 112
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.74 E-value=0.0073 Score=66.40 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
+..+++||||||||+++.++...+...+..++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 57899999999999999988888766665555443
No 113
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.73 E-value=0.0066 Score=71.12 Aligned_cols=51 Identities=29% Similarity=0.447 Sum_probs=44.5
Q ss_pred CCceEEEEccCCCcHHHH-HHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKT-VSMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~t-i~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
.+...+|.||.|||||.. +..++..++..+.++|+++||...+.++.+++.
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc
Confidence 357899999999999998 567777777889999999999999999888774
No 114
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.70 E-value=0.0079 Score=66.13 Aligned_cols=59 Identities=29% Similarity=0.439 Sum_probs=35.7
Q ss_pred CccccccCCCCCCCC--CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Q 041971 14 GVWNETFGPSLSSTL--NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76 (1044)
Q Consensus 14 ~~~~~~~~~~~~~~L--n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~ 76 (1044)
..|.+.+.+.....+ ++...+.+...+.. +.. +..+++||||||||+++..+...+...
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~---~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVER---KNI-PHLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT---TCC-CCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC---CCC-CeEEEECcCCcCHHHHHHHHHHHhcCC
Confidence 456655443332222 34444444444432 222 338999999999999999888887644
No 115
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.68 E-value=0.025 Score=68.62 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHH-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHHH
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTV-SMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVK 102 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti-~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~~ 102 (1044)
..-+.|++.+..+...+. .....++.+|.|||||-.. ..++..+...+.+|+++|+|+.-+.++.+-+..+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~---~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQ---KSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp --CHHHHHHHHHHHHHHH---HSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH---cCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 446789988876544432 1478999999999999754 455666666788999999999999999887766544
No 116
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.68 E-value=0.009 Score=66.91 Aligned_cols=61 Identities=25% Similarity=0.432 Sum_probs=36.8
Q ss_pred cCccccccCCCCCCCC--CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Q 041971 13 EGVWNETFGPSLSSTL--NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK 77 (1044)
Q Consensus 13 ~~~~~~~~~~~~~~~L--n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~ 77 (1044)
..+|.+.+.+...... ++.....+...+.. +.-+. .+++||||||||+++..++..+...+
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~---g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDE---GKLPH-LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT---TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc---CCCce-EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3467765543322222 33344444444443 21122 89999999999999999888876543
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.68 E-value=0.008 Score=65.25 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhccc---------cCCCceEEEEccCCCcHHHHHHHHHHH
Q 041971 28 LNDSQAQAVLSCLRQMRC---------DHKATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 28 Ln~sQ~~AV~~~l~~~~~---------~~~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
-.+.+.+.+...+..... -..+...+|+||||||||+++.++...
T Consensus 21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456777777666543100 123566899999999999998877655
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.67 E-value=0.02 Score=63.94 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Q 041971 30 DSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~ 76 (1044)
|.|.+++......+.-+.-+...++.||||||||+++..++..+...
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 44555554444443334556789999999999999999998888643
No 119
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.66 E-value=0.011 Score=66.74 Aligned_cols=46 Identities=28% Similarity=0.251 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhccccC-CCceEEEEccCCCcHHHHHHHHHHHHH
Q 041971 29 NDSQAQAVLSCLRQMRCDH-KATIQLIWGPPGTGKTKTVSMLLVILL 74 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~-~~~i~LI~GPPGTGKT~ti~~ll~~Ll 74 (1044)
.+.+.+++......+.... .+...+|.||||||||+++.++...+.
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566666554444332222 235899999999999999888877763
No 120
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.0091 Score=71.00 Aligned_cols=71 Identities=20% Similarity=0.368 Sum_probs=46.8
Q ss_pred CcCccccccCCCCC--CCCCHHHHHHHHHHHHhcccc-------------CCCceEEEEccCCCcHHHHHHHHHHHHHhC
Q 041971 12 SEGVWNETFGPSLS--STLNDSQAQAVLSCLRQMRCD-------------HKATIQLIWGPPGTGKTKTVSMLLVILLQM 76 (1044)
Q Consensus 12 ~~~~~~~~~~~~~~--~~Ln~sQ~~AV~~~l~~~~~~-------------~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~ 76 (1044)
....|.+.+.+... .--++.+.+.+...+....-. ......+|.||||||||+++.++...+
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--- 101 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--- 101 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---
Confidence 34568876655432 234677777777777642111 134689999999999999998887765
Q ss_pred CCcEEEEcC
Q 041971 77 KFRTLVCTP 85 (1044)
Q Consensus 77 ~~rILv~A~ 85 (1044)
+..++.+..
T Consensus 102 ~~~~i~in~ 110 (516)
T 1sxj_A 102 GYDILEQNA 110 (516)
T ss_dssp TCEEEEECT
T ss_pred CCCEEEEeC
Confidence 666665543
No 121
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.64 E-value=0.0083 Score=69.65 Aligned_cols=50 Identities=26% Similarity=0.419 Sum_probs=42.1
Q ss_pred CceEEEEccCCCcHHHHH-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTV-SMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti-~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
+...+|.||.|||||.+. ..++..++..|.++|+++||...+.++.+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC
Confidence 367899999999999986 56666777889999999999999988776653
No 122
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.62 E-value=0.019 Score=60.66 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=50.0
Q ss_pred ccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCC
Q 041971 871 PFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERP 947 (1044)
Q Consensus 871 pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1044)
++.+++.|.++| ...+++++.|.+|+||||++..-++.. .. .. ....
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~--~~---~~-------------------------~~~~ 108 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDD--FI---QN-------------------------DRAA 108 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHH--HH---HT-------------------------TCGG
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcc--hh---hc-------------------------CCCC
Confidence 456788888887 457789999999999999765443321 11 00 0112
Q ss_pred ceeEEEEecCHHHHHHHHHHHHHH
Q 041971 948 ILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 948 ~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
..+.+|+.....|+.++.+.+...
T Consensus 109 ~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 109 ECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp GCEEEEEESSHHHHHHHHHHHHHT
T ss_pred ceEEEEeccchHHHHHHHHHHHHH
Confidence 367899999999999997777654
No 123
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.58 E-value=0.059 Score=55.09 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=60.1
Q ss_pred ccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSV 927 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~ 927 (1044)
++..++..+-.. . -.++++-|.++| ...+++++.+..|||||++.++-++.. +. . .
T Consensus 8 l~~~l~~~l~~~------~-~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~--l~---~----~----- 66 (207)
T 2gxq_A 8 LKPEILEALHGR------G-LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER--LA---P----S----- 66 (207)
T ss_dssp CCHHHHHHHHHT------T-CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--CC---C----C-----
T ss_pred CCHHHHHHHHHc------C-CCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHH--Hh---h----c-----
Confidence 567666665432 1 136788898888 456799999999999999987766442 10 0 0
Q ss_pred ccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 928 TLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
.......+.++++.+..|+.++.+.+.++.
T Consensus 67 ---------------~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 67 ---------------QERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp ---------------CCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred ---------------cccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 001223689999999999999988887763
No 124
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.57 E-value=0.012 Score=60.32 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=35.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
..+.++.||+|+||||.+..++..+...|.+|++..|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 46999999999999999999999999999999999876
No 125
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.54 E-value=0.0048 Score=69.09 Aligned_cols=57 Identities=30% Similarity=0.506 Sum_probs=34.4
Q ss_pred CccccccCCCCCCCC--CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHH
Q 041971 14 GVWNETFGPSLSSTL--NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL 74 (1044)
Q Consensus 14 ~~~~~~~~~~~~~~L--n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll 74 (1044)
.+|.+.+.+.....+ ++...+.+..++.. +.. +..+++||||||||+++.++...+.
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~---~~~-~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS---ANL-PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC---TTC-CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc---CCC-CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467665544332222 23334444444433 222 3389999999999999988887764
No 126
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.52 E-value=0.017 Score=65.17 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=36.0
Q ss_pred ccccccCCCCCCCC--CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 15 VWNETFGPSLSSTL--NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 15 ~~~~~~~~~~~~~L--n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+|...+.+.....+ .+...+.+..++.. +..+...+|.||||||||+++..+...+
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444443332222 45555666666654 2334578999999999999998877665
No 127
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.51 E-value=0.016 Score=67.12 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=44.6
Q ss_pred CCCCCCHHH--HHHHHHHHHh-cccc--------CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 24 LSSTLNDSQ--AQAVLSCLRQ-MRCD--------HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 24 ~~~~Ln~sQ--~~AV~~~l~~-~~~~--------~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
....+++.| ..++...+.. +.|. ..+.+.+|.||||+||||++..++..+...|.+|++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 63 TPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred ccccCChHHHHHHHHHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 334577765 3444444433 3332 224589999999999999999999999989999988864
No 128
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.50 E-value=0.0055 Score=59.52 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=18.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
+...+|+||||||||+++.++..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 45689999999999998766544
No 129
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.49 E-value=0.0094 Score=69.63 Aligned_cols=49 Identities=29% Similarity=0.447 Sum_probs=43.0
Q ss_pred CceEEEEccCCCcHHHH-HHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKT-VSMLLVILLQMKFRTLVCTPTNVAIKELAARV 97 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~t-i~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL 97 (1044)
.++.+|.||+|||||.. +..++..++..+.++|+++||...+.++.+++
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHh
Confidence 57889999999999995 67777777888999999999999998888776
No 130
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.47 E-value=0.0091 Score=67.19 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=35.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNV 88 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~ 88 (1044)
...+++|.||||+||||++..++..+...+.+++.++.-..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 45799999999999999999999999888888888776543
No 131
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.47 E-value=0.049 Score=57.55 Aligned_cols=86 Identities=21% Similarity=0.357 Sum_probs=62.3
Q ss_pred cccccHHHHHHHhhhccCCcCcCcc-ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041971 848 FYRLSSVVVSHLLSDRVGRELDLPF-EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGV 923 (1044)
Q Consensus 848 f~~~s~~~~~~~l~~~~~~~~~~pf-~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~ 923 (1044)
-+.++..++..+..- .| ++++-|.++| ....++++.+..|||||.+.++-++.. + ..
T Consensus 33 ~~~l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~--l---~~------ 93 (245)
T 3dkp_A 33 EYKINSRLLQNILDA--------GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ--L---KQ------ 93 (245)
T ss_dssp HHCCCHHHHHHHHHT--------TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--H---CS------
T ss_pred ccCCCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH--H---hh------
Confidence 345777777776542 23 3788888887 457799999999999999987766532 1 00
Q ss_pred CCccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 924 NNSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.+||+....||.++.+.+.++-
T Consensus 94 --------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (245)
T 3dkp_A 94 --------------------PANKGFRALIISPTRELASQIHRELIKIS 122 (245)
T ss_dssp --------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred --------------------cccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 01122689999999999999988887763
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.013 Score=66.17 Aligned_cols=55 Identities=29% Similarity=0.435 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC---CCcEEEE
Q 041971 29 NDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVC 83 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~---~~rILv~ 83 (1044)
.+.+.+.+...+........+...+|.||||||||+++..++..+... +..++.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 456677776666542223456789999999999999999888777654 4455444
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.0084 Score=67.28 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=34.2
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHhc-cccCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Q 041971 15 VWNETFGPSLSSTLNDSQAQAVLSCLRQM-RCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76 (1044)
Q Consensus 15 ~~~~~~~~~~~~~Ln~sQ~~AV~~~l~~~-~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~ 76 (1044)
.|.+++.+.....+- .|..++......+ .-+..+. .+|.|||||||||++..++..+...
T Consensus 3 ~w~~kyrP~~~~~~v-g~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 3 LWVDKYRPKSLNALS-HNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp -CTTTTCCCSGGGCC-SCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred cchhccCCCCHHHhc-CCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 466655544333332 2334443333322 2222233 8999999999999998888766543
No 134
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.42 E-value=0.061 Score=55.69 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=61.2
Q ss_pred cccHHHHHHHhhhccCCcCcCccc-cCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFE-VTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNN 925 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~-lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~ 925 (1044)
.++..++..+-. +.|. +++-|.++| ....++++.+..|||||.+.++-++.. + .
T Consensus 20 ~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~--~---~--------- 77 (220)
T 1t6n_A 20 LLKPELLRAIVD--------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ--L---E--------- 77 (220)
T ss_dssp CCCHHHHHHHHH--------TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--C---C---------
T ss_pred CCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh--h---h---------
Confidence 356777766643 2344 789998887 456799999999999999887766532 0 0
Q ss_pred ccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHh
Q 041971 926 SVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKS 973 (1044)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~ 973 (1044)
......+.++|+.+..|+.++.+.+.++..
T Consensus 78 ------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (220)
T 1t6n_A 78 ------------------PVTGQVSVLVMCHTRELAFQISKEYERFSK 107 (220)
T ss_dssp ------------------CCTTCCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred ------------------ccCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 011226899999999999999888887743
No 135
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.37 E-value=0.013 Score=64.57 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+.+.+|.||||+||||++..++..+...+.+|++.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4568999999999999999999999988888888765
No 136
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.35 E-value=0.035 Score=61.19 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=46.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCC--HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCcEEEe
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPT--NVAIKELAARVVKLVKESVERDCRDALFFPLGDILLL 123 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~T--N~AVd~v~~rL~~~~~~~~~~~g~~~~~~~~~~ivr~ 123 (1044)
.+..+++||||||||+++..++..+.. ....++.+.++ +..++++.+ +.+.... .++.+-.+++.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~-li~~~~~--------~p~~~~~kvviI 88 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT-IKDFLNY--------SPELYTRKYVIV 88 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH-HHHHHTS--------CCSSSSSEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHH-HHHHHhh--------ccccCCceEEEe
Confidence 678999999999999999888765321 13467777665 456666655 3332221 122333467887
Q ss_pred cCCcccc
Q 041971 124 GNNERLK 130 (1044)
Q Consensus 124 G~~~~~~ 130 (1044)
.+-++|.
T Consensus 89 dead~lt 95 (305)
T 2gno_A 89 HDCERMT 95 (305)
T ss_dssp TTGGGBC
T ss_pred ccHHHhC
Confidence 7777663
No 137
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.34 E-value=0.015 Score=61.39 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=38.8
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHH-HhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVIL-LQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~L-l~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
....+++|.|+||+|||+++..++... ...+.++++++.... .+.+..|+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~ 79 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMA 79 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHH
Confidence 346899999999999999999887764 455788988886544 445666654
No 138
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.33 E-value=0.011 Score=68.88 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=42.9
Q ss_pred CceEEEEccCCCcHHHHH-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTV-SMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti-~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
....+|+||+|||||.+. ..++..+...+.++|+++||...+.++.+.+.
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh
Confidence 477999999999999985 56666677788899999999999998887765
No 139
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.33 E-value=0.018 Score=62.00 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=62.5
Q ss_pred cchhcccccc----cHHHHHHHhhhccCCcCcCcc-ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHH
Q 041971 842 SLSLMKFYRL----SSVVVSHLLSDRVGRELDLPF-EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELH 913 (1044)
Q Consensus 842 ~~~~~kf~~~----s~~~~~~~l~~~~~~~~~~pf-~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~ 913 (1044)
.+.-+.|-+| +..++..+-.- .| ++++-|.++| ...+++++.|..|||||+|.++-++.. +.
T Consensus 48 ~~~~~~f~~l~~~l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~--l~ 117 (262)
T 3ly5_A 48 AFEDTSFASLCNLVNENTLKAIKEM--------GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVEL--IV 117 (262)
T ss_dssp BSGGGCC-----CCCHHHHHHHHHT--------TCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHH--HH
T ss_pred ccccCChhHhccccCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHH--HH
Confidence 3444556554 56666554331 23 3888888887 456799999999999999988776542 11
Q ss_pred HHHhhhhhccCCccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 914 RMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
+... ......+.++++....|+.++.+.+.++-
T Consensus 118 ~~~~--------------------------~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 118 KLRF--------------------------MPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp HTTC--------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred hccc--------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 1000 00112678999999999999988887763
No 140
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.32 E-value=0.031 Score=57.49 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=55.1
Q ss_pred cCccccCHHHhhhhc---CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCC
Q 041971 869 DLPFEVTDEQLEMIL---SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETE 945 (1044)
Q Consensus 869 ~~pf~lt~~e~~iI~---~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1044)
...+++++-|.++|. ...+++|.|..|||||+++++-+... +..... .
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~--~~~~~~---------------------------~ 79 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDH--LDKKKK---------------------------A 79 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHH--HHHHHH---------------------------T
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHH--Hhhccc---------------------------c
Confidence 446889999999883 56799999999999999987755432 211110 0
Q ss_pred CCceeEEEEecCHHHHHH-HHHHHHHHHh
Q 041971 946 RPILRQLFVTVSPKLCFA-IKQHISQMKS 973 (1044)
Q Consensus 946 ~~~l~q~FvT~s~~L~~~-v~~~~~~l~~ 973 (1044)
....+.++|+.+..|+.+ +++.+.++..
T Consensus 80 ~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 80 SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp TCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 112579999999999999 7877777643
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.29 E-value=0.018 Score=61.77 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=27.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
+...+|+||||||||+++.++...+...+.+.+.+.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 467899999999999988887766554455555443
No 142
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.29 E-value=0.05 Score=57.32 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=60.0
Q ss_pred cccHHHHHHHhhhccCCcCcCccc-cCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFE-VTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNN 925 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~-lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~ 925 (1044)
.++..++.++-.- .|. +++-|.++| ....++++.+..|||||.+.++-++.. + .
T Consensus 36 ~l~~~l~~~l~~~--------g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~--l---~--------- 93 (237)
T 3bor_A 36 NLKESLLRGIYAY--------GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ--L---E--------- 93 (237)
T ss_dssp CCCHHHHHHHHHH--------TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHH--C---C---------
T ss_pred CCCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH--H---H---------
Confidence 3677777665431 344 788898877 456799999999999999877665432 0 0
Q ss_pred ccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 926 SVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.++|+....|+.++.+.+.++-
T Consensus 94 ------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 94 ------------------IEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp ------------------TTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ------------------hcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 00112679999999999999988888763
No 143
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=95.27 E-value=0.024 Score=68.54 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
...+.|-|++||..++.. .-.+|.+|.|+|||.+.. +..+ ..+.++|+++|+..-+.+..+++.+.
T Consensus 42 ~~~~rp~Q~~~i~~il~g-------~d~lv~~pTGsGKTl~~~--lpal-~~~g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 42 LEKFRPLQLETINVTMAG-------KEVFLVMPTGGGKSLCYQ--LPAL-CSDGFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp CCSCCTTHHHHHHHHHTT-------CCEEEECCTTSCTTHHHH--HHHH-TSSSEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC-------CCEEEEECCCChHHHHHH--HHHH-HcCCcEEEEeCHHHHHHHHHHHHHhc
Confidence 457889999999999875 568999999999996432 2222 35679999999999999999888764
No 144
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.26 E-value=0.0086 Score=65.77 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=33.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhC--CCcEEEEcCCHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTNV 88 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~--~~rILv~A~TN~ 88 (1044)
..++++|.||||||||+++..++..+.+. +.+++.++.-+.
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 34689999999999999999998888876 778888775443
No 145
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.24 E-value=0.075 Score=55.15 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=59.1
Q ss_pred ccHHHHHHHhhhccCCcCcCcc-ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPF-EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf-~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
++..++..+-.- .| ++++-|.++| ....++++.+..|||||.+.++-++.. + .
T Consensus 21 l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~--l---~---------- 77 (224)
T 1qde_A 21 LDENLLRGVFGY--------GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR--I---D---------- 77 (224)
T ss_dssp CCHHHHHHHHHH--------TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--C---C----------
T ss_pred CCHHHHHHHHHC--------CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH--H---h----------
Confidence 566666655331 23 5788898877 456799999999999999977666432 0 0
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.++++.+..|+.++.+.+.++.
T Consensus 78 -----------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 78 -----------------TSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp -----------------TTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred -----------------ccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 00122689999999999999988887763
No 146
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.22 E-value=0.02 Score=63.97 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=45.7
Q ss_pred cCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 46 DHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 46 ~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
-+...+.+|.|+||+|||+++..++..++..|.+|++.+.-.. ..++..|+....
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rlls~~ 97 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRALSDL 97 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHh
Confidence 3557899999999999999999999998889999999987544 457777876543
No 147
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.20 E-value=0.025 Score=60.99 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
..+...+|+||||||||+++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44577999999999999999887776
No 148
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.13 E-value=0.033 Score=65.68 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=56.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHHH
Q 041971 21 GPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMK--FRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 21 ~~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~--~rILv~A~TN~AVd~v~~rL~ 98 (1044)
|......|.|.|++||..+.... ..+.-.++..|.|+|||.++.+++..+...+ .++||++|+. .+.+..+.+.
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~---~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~ 106 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMN---KLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELS 106 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHH---HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHH
T ss_pred ChhhhccchHHHHHHHHHHHHHh---hCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHH
Confidence 55566789999999997654321 1123467788999999999988888887654 6899999965 6677777766
Q ss_pred HH
Q 041971 99 KL 100 (1044)
Q Consensus 99 ~~ 100 (1044)
+.
T Consensus 107 ~~ 108 (500)
T 1z63_A 107 KF 108 (500)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 149
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.11 E-value=0.029 Score=67.09 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
+.+.+.|++++..+...+. .....+|++|.|||||.. .++.. +..+.+|++++||+.-++++.+.+.+
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~---~~~~~~~~a~TGtGKT~~--~l~~~-~~~~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALK---HGKTLLLNAKPGLGKTVF--VEVLG-MQLKKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ---CCHHHHHHHHHHHHHH---TTCEEEEECCTTSCHHHH--HHHHH-HHHTCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHH---cCCCEEEEcCCCCcHHHH--HHHHH-HhCCCcEEEEcCCHHHHHHHHHHHHh
Confidence 4677899998765544321 236899999999999953 33333 34578999999999999988866553
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.09 E-value=0.02 Score=62.91 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=32.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHh-CCCcEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~-~~~rILv~A~ 85 (1044)
.+.+.+|.||+|+||||++..++..+.. .|.+|++++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4679999999999999999999998875 7888887763
No 151
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.07 E-value=0.024 Score=65.98 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=31.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
+..+++||||||||+++..+...+ +.....+...+..+.++.+.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVKEIREAIE 96 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHHHHHHHHH
Confidence 568999999999999988776654 4555554545555555544443
No 152
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.06 E-value=0.091 Score=54.95 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=59.2
Q ss_pred ccHHHHHHHhhhccCCcCcCccc-cCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFE-VTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~-lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
++..++..+- + ..|. +++-|.++| ....++++.+..|+|||.+.++-++.. +. .
T Consensus 31 l~~~l~~~l~-~-------~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~--l~---~--------- 88 (230)
T 2oxc_A 31 LSRPVLEGLR-A-------AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS--LV---L--------- 88 (230)
T ss_dssp CCHHHHHHHH-H-------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--CC---T---------
T ss_pred CCHHHHHHHH-H-------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH--HH---h---------
Confidence 5666666553 2 2344 788898887 456799999999999999987665432 00 0
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
.....+.+||+....|+.++.+.+.++.
T Consensus 89 ------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 89 ------------------ENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp ------------------TSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ------------------cCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 0112578999999999999998888764
No 153
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=95.06 E-value=0.019 Score=73.48 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHhcccc-------CCCceEEEEccCCCcHHHHHHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCD-------HKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTNVAIKELAAR 96 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~-------~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~--~~rILv~A~TN~AVd~v~~r 96 (1044)
..+.+.|.+||..++..+.-+ ....-.+||.|.|||||.++..++..+... ..+||+++|++.-++++.+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 468999999999998743211 012457999999999999986666433322 35999999999999988877
Q ss_pred HHH
Q 041971 97 VVK 99 (1044)
Q Consensus 97 L~~ 99 (1044)
+..
T Consensus 350 f~~ 352 (1038)
T 2w00_A 350 YQR 352 (1038)
T ss_dssp HHT
T ss_pred HHH
Confidence 764
No 154
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.05 E-value=0.019 Score=64.72 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=34.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
...+.+|.||||+|||+++..++..+...|.++++++.-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 468999999999999999999999999888898888764
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.04 E-value=0.012 Score=64.73 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=38.1
Q ss_pred cCccccccCCCCC--CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Q 041971 13 EGVWNETFGPSLS--STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM 76 (1044)
Q Consensus 13 ~~~~~~~~~~~~~--~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~ 76 (1044)
...|...+.+... ..-.+...+.+...+.. +. .+..+|+||||||||+++..+...+...
T Consensus 8 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~---~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 8 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKD---GN-MPHMIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS---CC-CCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred cCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc---CC-CCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 3456654443222 22245556666666654 22 2338999999999999999888887653
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.03 E-value=0.019 Score=64.54 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=34.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN 87 (1044)
...+.+|.||||+|||+++..++..+...+.++++.+...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4689999999999999999999999988888888777543
No 157
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.03 E-value=0.024 Score=57.36 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=32.6
Q ss_pred ccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 45 CDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 45 ~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+...+.+.+|.|+||+||||++..+...+-..|.++.++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 344567899999999999999999988888788887665
No 158
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.02 E-value=0.031 Score=61.13 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=38.4
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
....+.+|.||||+||||++..++..+... |.+|++.+.... ..++..|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~ 84 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 84 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHH
Confidence 346799999999999999999888888765 768988775432 234555554
No 159
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.00 E-value=0.016 Score=64.46 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 30 DSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+...+++..++.. .+..+++||||||||+++.++...+
T Consensus 33 ~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 33 KYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3444455555443 3679999999999999988776654
No 160
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.00 E-value=0.022 Score=57.08 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=34.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVA 89 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~A 89 (1044)
.+..|.||+|+||||++..++..|...|.+|-++......
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 6789999999999999999999998889998887766554
No 161
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.011 Score=68.00 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=25.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.=.|+.||||||||.++.+++..+ +..++.++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~ 239 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNG 239 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 3447999999999999998887664 555555543
No 162
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.011 Score=68.04 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=25.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.=.|+.||||||||.++.+++..+ +..++.++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 4557889999999999988877653 555555543
No 163
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.93 E-value=0.021 Score=63.41 Aligned_cols=37 Identities=22% Similarity=0.467 Sum_probs=33.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+.+.+|.||+|+||||++..++..+...|.+|+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4568899999999999999999999988899998875
No 164
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.90 E-value=0.032 Score=60.46 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=36.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhC----------CCcEEEEcCCHHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQM----------KFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~----------~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
...+.+|.||||+||||++..++..+... +.++++++.-... +.+..|+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~ 89 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHA 89 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHH
Confidence 45899999999999999999888765532 3577776654433 555555543
No 165
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.88 E-value=0.078 Score=55.96 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=60.9
Q ss_pred ccHHHHHHHhhhccCCcCcCccc-cCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFE-VTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~-lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
++..++..+-.- .|. +++-|.++| ....++++.+..|||||.+.++-++.. + ....
T Consensus 36 l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~--l---~~~~------- 95 (242)
T 3fe2_A 36 FPANVMDVIARQ--------NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH--I---NHQP------- 95 (242)
T ss_dssp CCHHHHHHHHTT--------TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHH--H---HTSC-------
T ss_pred CCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHH--H---Hhcc-------
Confidence 566666555431 333 788888887 456799999999999999987665432 1 1100
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHhh
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKSS 974 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~~ 974 (1044)
........+.++++....|+.++.+.+.++...
T Consensus 96 ---------------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 128 (242)
T 3fe2_A 96 ---------------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRA 128 (242)
T ss_dssp ---------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ---------------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 001122367999999999999998888886443
No 166
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.87 E-value=0.095 Score=55.70 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=60.8
Q ss_pred cccHHHHHHHhhhccCCcCcCcc-ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPF-EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNN 925 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf-~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~ 925 (1044)
.++..++..+-.- .| ++++-|.++| ...+++++.+..|||||++.++-++.. +. ..
T Consensus 49 ~l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~--l~---~~------- 108 (249)
T 3ber_A 49 GVTDVLCEACDQL--------GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA--LL---ET------- 108 (249)
T ss_dssp TCCHHHHHHHHHT--------TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--HH---HS-------
T ss_pred CCCHHHHHHHHHc--------CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHH--Hh---cC-------
Confidence 3577666655331 23 6788999887 567899999999999999877655432 21 00
Q ss_pred ccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHh
Q 041971 926 SVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKS 973 (1044)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~ 973 (1044)
....+.++++....|+.++.+.+.++..
T Consensus 109 --------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 136 (249)
T 3ber_A 109 --------------------PQRLFALVLTPTRELAFQISEQFEALGS 136 (249)
T ss_dssp --------------------CCSSCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred --------------------CCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 0126799999999999999998888744
No 167
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.87 E-value=0.039 Score=74.29 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHhC-CCcEEEEcCCHHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQM-KFRTLVCTPTNVAIKELAARVVKLVK 102 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~~-~~rILv~A~TN~AVd~v~~rL~~~~~ 102 (1044)
...+||-|.+|+...+.. +.-.+|.+|.|+|||.+.- +++..+... +.++++++|+..-+.+..+.+.+.+.
T Consensus 924 f~~fnpiQ~q~~~~l~~~------~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~ 997 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNS------DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQ 997 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSC------CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC------CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhc
Confidence 446999999999998865 4679999999999999875 444555543 67999999999999999988876553
No 168
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.013 Score=66.80 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=25.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
.+.=.|+.||||||||.++.+++..+ +..++.++.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 34557899999999999988887653 555555543
No 169
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.83 E-value=0.042 Score=72.21 Aligned_cols=70 Identities=29% Similarity=0.420 Sum_probs=52.6
Q ss_pred cccCHHHhhhhcCCC-cEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCcee
Q 041971 872 FEVTDEQLEMILSPR-STFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPILR 950 (1044)
Q Consensus 872 f~lt~~e~~iI~~~~-~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 950 (1044)
.++|++|.++|..++ +++|.|-.||||||+++-|+... +.. + ......=+
T Consensus 9 ~~~t~eQ~~~i~~~~~~~~v~a~AGSGKT~vl~~ri~~l-----l~~-~-----------------------~~~~~~~~ 59 (1232)
T 3u4q_A 9 STWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRK-----ITA-E-----------------------ENPIDVDR 59 (1232)
T ss_dssp -CCCHHHHHHHHCCSSCEEEEECTTCCHHHHHHHHHHHH-----HSC-S-----------------------SSCCCGGG
T ss_pred CCCCHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHH-----Hhc-C-----------------------CCCCCccc
Confidence 679999999997665 99999999999999999987442 110 0 00011135
Q ss_pred EEEEecCHHHHHHHHHHHHH
Q 041971 951 QLFVTVSPKLCFAIKQHISQ 970 (1044)
Q Consensus 951 q~FvT~s~~L~~~v~~~~~~ 970 (1044)
.+.||-+...+.++++.+..
T Consensus 60 il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 60 LLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHHHHHH
Confidence 78889999999999988876
No 170
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.82 E-value=0.029 Score=66.73 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
..+.+-|++|+..+++. .-.+|.+|.|+|||.+.. +..+ ..+.++|+++|+..-+.+..+++.+.
T Consensus 24 ~~~r~~Q~~~i~~il~g-------~d~lv~apTGsGKTl~~~--lp~l-~~~g~~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSG-------RDCLVVMPTGGGKSLCYQ--IPAL-LLNGLTVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp SSCCTTHHHHHHHHHTT-------CCEEEECSCHHHHHHHHH--HHHH-HSSSEEEEECSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEECCCCcHHHHHHH--HHHH-HhCCCEEEECChHHHHHHHHHHHHHc
Confidence 46788999999999875 568999999999996432 3333 34568999999999999998888743
No 171
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.82 E-value=0.0085 Score=73.37 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=50.6
Q ss_pred CCCHHHH-----HHHHHHHHhccccCCCceEEEEccCCCcHHHH-HHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 27 TLNDSQA-----QAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT-VSMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 27 ~Ln~sQ~-----~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~t-i~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
.+++-|+ .||..++. ...-..+...+|.||.|||||.+ +..++..+...+.++|+++||...+.++.+++.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~-~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYN-PEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCC-GGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhh-HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh
Confidence 4555566 77765551 00111347899999999999998 466777777888999999999999998887765
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.82 E-value=0.014 Score=63.86 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhcc--------ccCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 29 NDSQAQAVLSCLRQMR--------CDHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~--------~~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+.+++...+.... -...+...+|.||||||||+++.++...+
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4566666665543200 01235678999999999999988876654
No 173
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.82 E-value=0.014 Score=64.29 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+...+|.||||||||+++.++...+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678999999999999988877654
No 174
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.013 Score=67.57 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHh-cc--------ccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 30 DSQAQAVLSCLRQ-MR--------CDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~-~~--------~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.|.+.+..++.. +. .-..+.=.|+.||||||||.++.+++..+ +..++.++.
T Consensus 187 ~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 5676666655432 10 11234557889999999999998877654 555555543
No 175
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.77 E-value=0.027 Score=66.30 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=36.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC---CHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP---TNVAIKEL 93 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~---TN~AVd~v 93 (1044)
+.+.+|.|+||+||||++..++..+...|.++++++. .+.|++.+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHH
Confidence 4577888999999999999999999999999988876 45565543
No 176
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.74 E-value=0.016 Score=64.31 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhc--------cccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 29 NDSQAQAVLSCLRQM--------RCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~--------~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+.+.+++...+... .....+.-.|++||||||||+++.++...+ +..++.+.
T Consensus 23 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~ 83 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVS 83 (322)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEc
Confidence 456666666655210 111224568999999999999988876653 45555443
No 177
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.74 E-value=0.032 Score=64.19 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
...+.+.+..++..++. ...++.+|.||.|+||||++.+++..+-....+|++.
T Consensus 148 ~Lg~~~~~~~~L~~l~~-----~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRLIK-----RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp GSCCCHHHHHHHHHHHT-----SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred HcCCCHHHHHHHHHHHH-----hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 34577888888877743 3568999999999999999999887664444555543
No 178
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.74 E-value=0.024 Score=64.13 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=35.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN 87 (1044)
....+.+|.||||+|||+++..++..+...|.++++++.-.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34679999999999999999999999988888998887654
No 179
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.72 E-value=0.014 Score=64.82 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.-.|+.||||||||+++.++...+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4678999999999999998887765
No 180
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.72 E-value=0.033 Score=65.06 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=42.3
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~-~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
+...+.+|.||||+|||+++..++..+.. .|.+|++.+.-..+ .++..|+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~ 253 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLC 253 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHH
Confidence 45789999999999999999999988876 58899999865543 567777653
No 181
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.70 E-value=0.025 Score=63.18 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhc-cccCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 30 DSQAQAVLSCLRQM-RCDHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~~-~~~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+...+.+...+... .........+++|||||||||++..+...+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 44555555555431 111234679999999999999988877665
No 182
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.70 E-value=0.035 Score=59.64 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHH
Q 041971 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 24 ~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
.....|+.+-.+....+-... +.+..-.++.||||||||.++.+++..
T Consensus 80 ~~qg~~~~~~~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 80 ELNGYDPQYAASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHTTCCHHHHHHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 445688888766655554411 011345999999999999999988765
No 183
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.69 E-value=0.026 Score=65.61 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=43.1
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
+...+.+|.|+||+|||+++..++..++..|.+|++.+.-. ...++..|+..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~ 246 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIV 246 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHH
Confidence 55789999999999999999999999988899999998654 34456667654
No 184
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.66 E-value=0.026 Score=66.79 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=43.5
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
....+.+|.||||+|||+++..++..++.. |.+|++++.-.. ..++..|+...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~ 293 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGL 293 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHH
Confidence 456899999999999999999999998876 889999987554 34777777543
No 185
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.61 E-value=0.033 Score=65.04 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcccc-CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 29 NDSQAQAVLSCLRQMRCD-HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~-~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+..++++...+....-+ ..+.-.|+.||||||||+++.++...+ ..+...+.+.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~ 97 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMV 97 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEe
Confidence 445555554444432222 233568999999999999998877775 2224444433
No 186
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.59 E-value=0.029 Score=62.51 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=33.9
Q ss_pred CcCccccccCCCC--CCCCCHHHHHHHHHHHHhccc-cCCCceEEEEccCCCcHHHHHHHHHHH
Q 041971 12 SEGVWNETFGPSL--SSTLNDSQAQAVLSCLRQMRC-DHKATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 12 ~~~~~~~~~~~~~--~~~Ln~sQ~~AV~~~l~~~~~-~~~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
.+..|...+.+.. .+-=.+...+++...+..... .......+|.||||||||+++.++...
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3446665443322 233456666677766664211 233457899999999999998887554
No 187
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.59 E-value=0.015 Score=64.07 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
..+.+|.||||||||+++..++.. .|.+++.++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs 155 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYAT 155 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEE
Confidence 467899999999999999888766 455544333
No 188
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.59 E-value=0.029 Score=64.95 Aligned_cols=37 Identities=32% Similarity=0.414 Sum_probs=32.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhC-CCcEEEEcC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTP 85 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-~~rILv~A~ 85 (1044)
+.+.+|.|++|+|||||++.++..|... |.+|++++-
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4577788999999999999999999998 999988764
No 189
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.58 E-value=0.031 Score=56.75 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=27.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+.+|.||||+||||++..+...+-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 468999999999999999988887778877644
No 190
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.57 E-value=0.052 Score=64.98 Aligned_cols=68 Identities=25% Similarity=0.272 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
+.+-|.|++++..+...+. .....+|++|+|||||... ++..+. .+.+|++++||+.-++++.+.+..
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~---~~~~~~~~a~TGtGKT~~~--l~p~l~-~~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLR---NNFLVALNAPTGSGKTLFS--LLVSLE-VKPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHH---TTCEEEEECCTTSSHHHHH--HHHHHH-HCSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHH---cCCcEEEECCCCccHHHHH--HHHHHh-CCCeEEEEcCCHHHHHHHHHHHHH
Confidence 3567899997665544321 1368999999999996643 333333 678999999999999988765543
No 191
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.53 E-value=0.03 Score=63.94 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH-Hhcccc--CCCceEEE--EccCCCcHHHHHHHHHHHHHh
Q 041971 30 DSQAQAVLSCL-RQMRCD--HKATIQLI--WGPPGTGKTKTVSMLLVILLQ 75 (1044)
Q Consensus 30 ~sQ~~AV~~~l-~~~~~~--~~~~i~LI--~GPPGTGKT~ti~~ll~~Ll~ 75 (1044)
+.+.+.+...+ ...... ..++..+| .||||||||+++..++..+..
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 46667777776 532222 34578889 999999999999988877754
No 192
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.52 E-value=0.024 Score=68.78 Aligned_cols=50 Identities=28% Similarity=0.445 Sum_probs=43.5
Q ss_pred CceEEEEccCCCcHHHH-HHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKT-VSMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~t-i~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
....++.||.|||||.. +..++..+...+.++|+++||...+.++.+.+.
T Consensus 186 g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 186 KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc
Confidence 47899999999999998 466777778888899999999999998887764
No 193
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.50 E-value=0.023 Score=66.56 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh
Q 041971 31 SQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ 75 (1044)
Q Consensus 31 sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~ 75 (1044)
...+.+...+.. ...+..++.||||||||+++.++...+..
T Consensus 187 ~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 187 KEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 444444444432 23345689999999999999888888765
No 194
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.50 E-value=0.036 Score=56.62 Aligned_cols=39 Identities=15% Similarity=0.042 Sum_probs=36.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN 87 (1044)
.+..+|.+|+|+||||.+..++...+..|.||+++.+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 589999999999999999999999999999999997654
No 195
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.50 E-value=0.022 Score=60.84 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=20.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.-.+|.||||||||+++.++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3458999999999999988876553
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.49 E-value=0.025 Score=58.45 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
....+.+|.||||+|||+++..++. ..+.++++++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 3467999999999999999988877 45667766553
No 197
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.46 E-value=0.07 Score=55.29 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=60.6
Q ss_pred ccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSV 927 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~ 927 (1044)
++..++..+-.- . -+++++-|.++| ...+++++.+..|||||.+.++-++.. + .
T Consensus 11 l~~~l~~~l~~~------g-~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~--l---~----------- 67 (219)
T 1q0u_A 11 FQPFIIEAIKTL------R-FYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK--I---K----------- 67 (219)
T ss_dssp CCHHHHHHHHHT------T-CCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHH--C---C-----------
T ss_pred CCHHHHHHHHHC------C-CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH--H---H-----------
Confidence 567666665331 1 246789998887 356899999999999999887766542 0 0
Q ss_pred ccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHh
Q 041971 928 TLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKS 973 (1044)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~ 973 (1044)
......+.++++....|+.++.+.+.++..
T Consensus 68 ----------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 97 (219)
T 1q0u_A 68 ----------------PERAEVQAVITAPTRELATQIYHETLKITK 97 (219)
T ss_dssp ----------------TTSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ----------------hCcCCceEEEEcCcHHHHHHHHHHHHHHhh
Confidence 001126899999999999999888888754
No 198
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.45 E-value=0.034 Score=56.04 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=27.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+.+|.||||+||||++..+...+-..|..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 578999999999999999888887677777666
No 199
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.44 E-value=0.083 Score=64.65 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVK 102 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~~ 102 (1044)
.+.+++.|..|+......+.-+ ....++.|.+|||||.+++.++..+ +.++|+++++...+.++.+.|..++.
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~--~~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDG--ERFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTT--CSEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCChHHHHHHHHHHhcC--CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 4588999999998776553221 1235788999999999999887654 67899999999999999999987753
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.43 E-value=0.061 Score=60.57 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
....+..|.|+||+||||++..++..+...|.+|++++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3456889999999999999999999999999999887654
No 201
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.019 Score=65.70 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHh-cc--------ccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 30 DSQAQAVLSCLRQ-MR--------CDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~-~~--------~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
+.|.+.+..++.. +. .-..+.=.|+.||||||||.++.+++..+ +..++.++
T Consensus 188 d~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~ 248 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIV 248 (437)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEE
Confidence 5666666655432 10 11234558899999999999988887653 44554444
No 202
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.40 E-value=0.024 Score=61.48 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.4
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 041971 52 QLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
.++.||||||||+++.++...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999998877654
No 203
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.37 E-value=0.025 Score=63.85 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=25.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+...++.||||||||+++.++...+ +.+.+.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEec
Confidence 34678999999999999888777665 55555443
No 204
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.33 E-value=0.046 Score=63.62 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=42.5
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~-~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
+...+.+|.||||+|||+++..++..++. .|.+|++.+.-.. ..++..|+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~ 250 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMC 250 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHH
Confidence 45789999999999999999999988876 4889999887644 3467777763
No 205
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.28 E-value=0.079 Score=57.27 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=32.7
Q ss_pred CCCceEEEEcc-CCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 47 HKATIQLIWGP-PGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 47 ~~~~i~LI~GP-PGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
....+.+|.|+ ||.|||++.+.+...|...|.|||++-
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 44567778876 999999999999999999999999863
No 206
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.27 E-value=0.04 Score=59.14 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=30.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
..+.+|.|+||+||||++..+...|...|..+++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 357899999999999999999888877888777554
No 207
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.23 E-value=0.043 Score=60.18 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=36.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC---HHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT---NVAIKE 92 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T---N~AVd~ 92 (1044)
+.+.+|.||||+||||++..++..+...|.+|+++... +.|.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~q 144 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQ 144 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHH
Confidence 45788889999999999999999999999999887653 445443
No 208
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.23 E-value=0.025 Score=63.83 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=24.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+.-.|+.||||||||+++.++...+ +..++.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCEEEe
Confidence 3458899999999999998887765 4455444
No 209
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.22 E-value=0.03 Score=61.73 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhccc-cCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 29 NDSQAQAVLSCLRQMRC-DHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~-~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+....++..++..... .......+|+||||||||+++.++...+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 45666666666653221 1234678999999999999998887655
No 210
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.21 E-value=0.11 Score=57.03 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=60.8
Q ss_pred ccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cC--CCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LS--PRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNN 925 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~--~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~ 925 (1044)
|+..++.++-.- + . -++|+-|.++| .. ++++++.+..|||||.+.++-++.. +.
T Consensus 99 l~~~l~~~l~~~--g--~---~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~-----l~--------- 157 (300)
T 3fmo_B 99 LKPQLLQGVYAM--G--F---NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ-----VE--------- 157 (300)
T ss_dssp CCHHHHHHHHHT--T--C---CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH-----CC---------
T ss_pred CCHHHHHHHHHc--C--C---CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh-----hh---------
Confidence 677777776542 1 1 24677777766 33 4799999999999999987766542 00
Q ss_pred ccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHhh
Q 041971 926 SVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKSS 974 (1044)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~~ 974 (1044)
.....++.++++...-||.++.+.+.++...
T Consensus 158 ------------------~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~ 188 (300)
T 3fmo_B 158 ------------------PANKYPQCLCLSPTYELALQTGKVIEQMGKF 188 (300)
T ss_dssp ------------------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ------------------ccCCCceEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 0112368999999999999999998887544
No 211
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.17 E-value=0.05 Score=56.37 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=34.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN 87 (1044)
..+.++.||+|+||||.+..++..+...|.+|++..|.-
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 468889999999999999999999999999999988753
No 212
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.14 E-value=0.14 Score=58.04 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=61.0
Q ss_pred ccHHHHHHHhhhccCCcCcCccccCHHHhhhhc---CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFEVTDEQLEMIL---SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSV 927 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI~---~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~ 927 (1044)
++..++.++..- .|. ++++-|.++|. ...++++.+..|+|||++.++-++..- .
T Consensus 28 l~~~l~~~l~~~------g~~-~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~-----~----------- 84 (400)
T 1s2m_A 28 LKRELLMGIFEA------GFE-KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV-----K----------- 84 (400)
T ss_dssp CCHHHHHHHHHT------TCC-SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHC-----C-----------
T ss_pred CCHHHHHHHHHC------CCC-CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHH-----h-----------
Confidence 577777776542 121 48999999883 567899999999999999887765420 0
Q ss_pred ccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 928 TLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.++|+.+..|+.++.+.+.++-
T Consensus 85 ----------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 85 ----------------PKLNKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp ----------------TTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ----------------hccCCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 00122579999999999999988888764
No 213
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.13 E-value=0.093 Score=53.77 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 32 QAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 32 Q~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
+.+++...+..+ ......+..|.||+|+||||++..+...+-..+..|.+..
T Consensus 6 ~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 6 RIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp HHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 344444444432 1234578999999999999999888877766677776653
No 214
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.13 E-value=0.53 Score=53.20 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=61.4
Q ss_pred cccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cC--CCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LS--PRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVN 924 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~--~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~ 924 (1044)
.++..++.++-.- .| .++++-|.++| .. +.++++.+..|+|||++.++-++.. + .
T Consensus 31 ~l~~~l~~~l~~~------g~-~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~--~---~-------- 90 (412)
T 3fht_A 31 RLKPQLLQGVYAM------GF-NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ--V---E-------- 90 (412)
T ss_dssp TCCHHHHHHHHHT------TC-CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHH--C---C--------
T ss_pred CCCHHHHHHHHHc------CC-CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHH--h---h--------
Confidence 3577777766542 11 25788888887 22 4899999999999999987766532 0 0
Q ss_pred CccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHhh
Q 041971 925 NSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKSS 974 (1044)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~~ 974 (1044)
......+.+|++....||.++.+.+.++...
T Consensus 91 -------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 121 (412)
T 3fht_A 91 -------------------PANKYPQCLCLSPTYELALQTGKVIEQMGKF 121 (412)
T ss_dssp -------------------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred -------------------hcCCCCCEEEECCCHHHHHHHHHHHHHHHhh
Confidence 0112257999999999999999988887443
No 215
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.13 E-value=0.015 Score=62.59 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=19.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
.-.+|.||||||||+++.++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999998877664
No 216
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.12 E-value=0.047 Score=62.55 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=53.7
Q ss_pred CccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCC
Q 041971 870 LPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETER 946 (1044)
Q Consensus 870 ~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1044)
++|++++-|.++| ....++++.+..|||||++.++-++..- .
T Consensus 18 ~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------~----------------------------- 62 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------R----------------------------- 62 (414)
T ss_dssp HSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------T-----------------------------
T ss_pred cCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------c-----------------------------
Confidence 4778999999988 4567999999999999997666543321 0
Q ss_pred CceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 947 PILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 947 ~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
...+.+|++....||.++.+.+.++-
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 11689999999999999999888863
No 217
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.11 E-value=0.079 Score=63.62 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=58.0
Q ss_pred hcccccccHHHHHHHhhhccCCc------------CcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHH
Q 041971 845 LMKFYRLSSVVVSHLLSDRVGRE------------LDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQK 909 (1044)
Q Consensus 845 ~~kf~~~s~~~~~~~l~~~~~~~------------~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~ 909 (1044)
+..+|.....++..+..-..+.. -.+++.|+++|++.| ...+.++|.|..||||||++..-+ .
T Consensus 149 l~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~-~- 226 (574)
T 3e1s_A 149 LPHVLRAEKKLASLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA-D- 226 (574)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCC-CCCCCCCCCTTTTTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHH-H-
T ss_pred cHHHHHHHHHHHHHHHHHhccCCccCCChhhHHHHHhhcCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHH-H-
Confidence 44666666677766643111111 122788999999988 347899999999999999754322 1
Q ss_pred HHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHH
Q 041971 910 EELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQH 967 (1044)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~ 967 (1044)
.+... ..+.++++.+...+..+++.
T Consensus 227 ----~l~~~-----------------------------g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 227 ----LAESL-----------------------------GLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp ----HHHHT-----------------------------TCCEEEEESSHHHHHHHHHH
T ss_pred ----HHHhc-----------------------------CCeEEEecCcHHHHHHhHhh
Confidence 11111 15678889999999888764
No 218
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.07 E-value=0.031 Score=63.36 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=24.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
....+++||||||||+++.++...+ +.++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL---DIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEe
Confidence 4568999999999999988877665 4454443
No 219
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.05 E-value=0.047 Score=55.08 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=27.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+.+|.||||+||||++..+...+-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999988888877678776654
No 220
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.03 E-value=0.035 Score=64.64 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
.+.-.|++||||||||+++.++...+ .+..++.+..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 34678999999999999998887765 34455555443
No 221
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.01 E-value=0.076 Score=71.54 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHH-HHHHHHHh----------CCCcEEEEcCCHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVS-MLLVILLQ----------MKFRTLVCTPTNVAIKEL 93 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~-~ll~~Ll~----------~~~rILv~A~TN~AVd~v 93 (1044)
...||+-|.+++..++.. +...+|.+|-|+|||.++. +++..+.+ .+.+++++||+..-+.++
T Consensus 77 ~~~ln~iQs~~~~~al~~------~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~ 150 (1724)
T 4f92_B 77 FKTLNRIQSKLYRAALET------DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 150 (1724)
T ss_dssp CSBCCHHHHHTHHHHHTC------CCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC------CCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHH
Confidence 347999999999999975 5679999999999999875 44444443 256899999999999999
Q ss_pred HHHHHHHHH
Q 041971 94 AARVVKLVK 102 (1044)
Q Consensus 94 ~~rL~~~~~ 102 (1044)
.+.+.+.+.
T Consensus 151 ~~~l~~~~~ 159 (1724)
T 4f92_B 151 VGSFGKRLA 159 (1724)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999887664
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.026 Score=65.14 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHh-c-------c-ccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 30 DSQAQAVLSCLRQ-M-------R-CDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~-~-------~-~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.|.+.+..++.. + . .-..+.=.|+.||||||||.++.+++..+ +..++.++.
T Consensus 215 ~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~ 276 (467)
T 4b4t_H 215 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIG 276 (467)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence 4677777654321 0 0 11345667899999999999988877654 455555543
No 223
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.97 E-value=0.13 Score=53.87 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=59.5
Q ss_pred ccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSV 927 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~ 927 (1044)
++..++.++-.- .| .++++-|.++| ...+++++.+..|||||++.++-++.. +.....
T Consensus 32 l~~~l~~~l~~~------~~-~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~--l~~~~~---------- 92 (236)
T 2pl3_A 32 LSKKTLKGLQEA------QY-RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA--LYRLQW---------- 92 (236)
T ss_dssp CCHHHHHHHHHT------TC-CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--HHHTTC----------
T ss_pred CCHHHHHHHHHC------CC-CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHH--HHhhcc----------
Confidence 566666665431 11 25788888877 467899999999999999877655432 221000
Q ss_pred ccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 928 TLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.++++....||.++.+.+.++.
T Consensus 93 ----------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 93 ----------------TSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp ----------------CGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ----------------cccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 01123689999999999999988887763
No 224
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.90 E-value=0.042 Score=57.96 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHH-hCCCcEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll-~~~~rILv~A~ 85 (1044)
...+..|.||+|+||||++..++...+ ..+..+++...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 468999999999999999998886544 55655555543
No 225
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.89 E-value=0.032 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=19.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.||||+||||++..+...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999888776554
No 226
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.85 E-value=0.025 Score=60.24 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHH
Q 041971 52 QLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+|.||||||||+++.++...+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999988776553
No 227
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.84 E-value=0.03 Score=63.18 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=25.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+...||+||||||||+++.++...+ +..++.+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~ 149 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSIS 149 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEe
Confidence 45678999999999999998886553 55554443
No 228
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.83 E-value=0.044 Score=58.45 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=32.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
..+.++.|.||+||||++..++..+. .|.+|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 47889999999999999999999998 999998876
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.82 E-value=0.053 Score=60.30 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=33.1
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
..+.+..|.||+|+||||++..+...+...+.+|++.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34679999999999999999999988888888887764
No 230
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.82 E-value=0.062 Score=55.24 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=29.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+.+.+|.||||+||||++..+...+-..+..+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 46889999999999999999888887677776443
No 231
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.80 E-value=0.039 Score=61.89 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=32.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHh------CCCcEEEEcCCH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQ------MKFRTLVCTPTN 87 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~------~~~rILv~A~TN 87 (1044)
....+++|.||||+|||+++..++...+. .+.+++.++..+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44679999999999999999988877544 466787777655
No 232
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.78 E-value=0.037 Score=61.55 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhC------CCcEEEEcCCH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQM------KFRTLVCTPTN 87 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~------~~rILv~A~TN 87 (1044)
....+++|.||||+|||+++..++...... +.+++.++..+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 346799999999999999999988876554 66777776544
No 233
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.75 E-value=0.22 Score=55.35 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=59.5
Q ss_pred ccHHHHHHHhhhccCCcCcCccccCHHHhhhhc----CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFEVTDEQLEMIL----SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI~----~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
++..+...+-.- .| .++++.|.++|. ...++++.+..|||||+++++-++.. + .
T Consensus 13 l~~~~~~~l~~~------g~-~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~--~---~---------- 70 (367)
T 1hv8_A 13 LSDNILNAIRNK------GF-EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL--V---N---------- 70 (367)
T ss_dssp CCHHHHHHHHHH------TC-CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH--S---C----------
T ss_pred CCHHHHHHHHHc------CC-CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH--h---c----------
Confidence 567776665442 11 268999999883 33699999999999999988766532 0 0
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
.....+.++|+.+..|+.++.+.+.++.
T Consensus 71 ------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 71 ------------------ENNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp ------------------SSSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred ------------------ccCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 0122678999999999999998888864
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.71 E-value=0.033 Score=55.62 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.||||+||||++..+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999888776654
No 235
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.69 E-value=0.045 Score=59.77 Aligned_cols=48 Identities=27% Similarity=0.361 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHH-HHhc----cccCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSC-LRQM----RCDHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~-l~~~----~~~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+++.|...+..- +... .....+.+.+|.||||+||||++..+...+
T Consensus 5 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 5 VNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45666555443322 2222 122345688999999999999988876653
No 236
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.65 E-value=0.25 Score=55.65 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=61.5
Q ss_pred cccHHHHHHHhhhccCCcCcCccc-cCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFE-VTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNN 925 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~-lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~ 925 (1044)
.+++.++..+-. +.|. +++-|.++| ....+++|.+..|+|||++.++-++.. + .
T Consensus 14 ~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~--l---~--------- 71 (391)
T 1xti_A 14 LLKPELLRAIVD--------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ--L---E--------- 71 (391)
T ss_dssp CCCHHHHHHHHH--------HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHH--C---C---------
T ss_pred CCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHh--h---c---------
Confidence 356766666543 2344 899999987 456799999999999999988766532 0 0
Q ss_pred ccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHhh
Q 041971 926 SVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKSS 974 (1044)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~~ 974 (1044)
......+.++|+.+..|+.++.+.+.++...
T Consensus 72 ------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 102 (391)
T 1xti_A 72 ------------------PVTGQVSVLVMCHTRELAFQISKEYERFSKY 102 (391)
T ss_dssp ------------------CCTTCCCEEEECSCHHHHHHHHHHHHHHTTT
T ss_pred ------------------ccCCCeeEEEECCCHHHHHHHHHHHHHHHhh
Confidence 0012268999999999999999988887443
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.64 E-value=0.067 Score=53.78 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=30.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
++..|.||+|+||||++..++..+...+.++-++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 688999999999999999999888777777655543
No 238
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.64 E-value=0.11 Score=56.91 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=32.9
Q ss_pred CCCceEEEEcc-CCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 47 HKATIQLIWGP-PGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 47 ~~~~i~LI~GP-PGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
....+.+|.|+ ||.|||++.+.+...|...|.+||++-
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 44567778876 999999999999999999999999874
No 239
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.58 E-value=0.13 Score=51.69 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHH-HHHHHHHHHhCCCcEEEEcCCHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKT-VSMLLVILLQMKFRTLVCTPTNVAIKELAAR 96 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~t-i~~ll~~Ll~~~~rILv~A~TN~AVd~v~~r 96 (1044)
+.+=++.|..|+...+.. .+.+.+|+|+-||+||+. +..++...-..|.+|.++||++.+...+.+.
T Consensus 32 ~~~~~~~~~~a~~~l~~s-----~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~ 99 (189)
T 2l8b_A 32 SVPRTAGYSDAVSVLAQD-----RPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQD 99 (189)
T ss_dssp CCCCHHHHHHHHHHHHHH-----SCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCT
T ss_pred ccccCccchhHHHHHhcc-----CCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhh
Confidence 344558899999988876 578999999999999998 5566666667899999999999998754433
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.55 E-value=0.044 Score=57.52 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=28.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHh------CCCcEEEEcCC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQ------MKFRTLVCTPT 86 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~------~~~rILv~A~T 86 (1044)
...+.+|.||||+|||+++..++...+. .+.+++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 4579999999999999999988876433 24555555443
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.55 E-value=0.071 Score=58.64 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=32.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
.+.+..|.||.|+||||++..+...+...+.+|++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 45789999999999999999998888877888888764
No 242
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.54 E-value=0.3 Score=55.52 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=62.5
Q ss_pred ccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSV 927 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~ 927 (1044)
+++.++.++-.- .| .++|+-|.++| ...+++++.+..|||||++.++-++.. +..-....
T Consensus 22 l~~~l~~~l~~~------~~-~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~--~~~~~~~~-------- 84 (417)
T 2i4i_A 22 MGEIIMGNIELT------RY-TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ--IYSDGPGE-------- 84 (417)
T ss_dssp CCHHHHHHHHHH------TC-CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--HHHHCCCH--------
T ss_pred CCHHHHHHHHHC------CC-CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHH--HHhccccc--------
Confidence 577777766432 11 26788898887 567899999999999999888766543 11100000
Q ss_pred ccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 928 TLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
.... ..+ ...........+.++++....||.++.+.+.++.
T Consensus 85 ~~~~--~~~--~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (417)
T 2i4i_A 85 ALRA--MKE--NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS 125 (417)
T ss_dssp HHHH--HHH--CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhhc--ccc--ccccccccCCccEEEECCcHHHHHHHHHHHHHHh
Confidence 0000 000 0000012233689999999999999998888764
No 243
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.52 E-value=0.055 Score=55.47 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=25.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEE
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTL 81 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rIL 81 (1044)
.+.+|.||||+||||++..+...+-..| .++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 5788999999999999988887775555 453
No 244
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.50 E-value=0.044 Score=55.33 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+.+|.||||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999988887665
No 245
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.39 E-value=0.077 Score=64.36 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=41.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
+...++.||.|||||..+. ..++..+.++|+++||...+.++.+++.+..
T Consensus 232 ~~~vlv~ApTGSGKT~a~~---l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVP---AAYAAQGYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp CEEEEEECCTTSCTTTHHH---HHHHHTTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCchhHHHHHH---HHHHHCCCeEEEEcchHHHHHHHHHHHHHHh
Confidence 4789999999999996544 3445678899999999999999999887654
No 246
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.38 E-value=0.047 Score=54.95 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=24.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCC
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKF 78 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~ 78 (1044)
.+.+|.||||+||||++..+...+-..|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 32 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 32 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 57899999999999999888877765553
No 247
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.38 E-value=0.056 Score=63.66 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=20.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+..++.||||||||+++.++...+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CCeeEeecCchHHHHHHHHHHHHHH
Confidence 3689999999999999887776544
No 248
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.36 E-value=0.079 Score=67.84 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=54.5
Q ss_pred CcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCC
Q 041971 868 LDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGET 944 (1044)
Q Consensus 868 ~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1044)
..|||++++-|.++| ....+++|.|..|+|||+|.++-+.... .
T Consensus 34 ~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~-----~---------------------------- 80 (997)
T 4a4z_A 34 RSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH-----R---------------------------- 80 (997)
T ss_dssp CCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH-----H----------------------------
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH-----h----------------------------
Confidence 478999999999998 3578999999999999999887664421 0
Q ss_pred CCCceeEEEEecCHHHHHHHHHHHHHH
Q 041971 945 ERPILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 945 ~~~~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
...+.++++....|+.++-+.+.++
T Consensus 81 --~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 81 --NMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp --TTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred --cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 0157899999999999887766653
No 249
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.36 E-value=0.04 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
.+.+|.||||+||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999998877765
No 250
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.35 E-value=0.051 Score=53.54 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEE
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLV 82 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv 82 (1044)
.+.+|.||||+||||++..+ ...|..++-
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEEE
Confidence 36789999999999988777 345666544
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.34 E-value=0.075 Score=58.43 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=32.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
.+.+..|.||.|+||||++..+...+...+.+|++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee
Confidence 45689999999999999999998888878888888763
No 252
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.33 E-value=0.035 Score=61.93 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+..+|+||||||||+++.++...+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ceEEEECCCCccHHHHHHHHHHhC
Confidence 459999999999999888777654
No 253
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.31 E-value=0.14 Score=55.88 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=31.2
Q ss_pred CCCceEEEEc-cCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 47 HKATIQLIWG-PPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 47 ~~~~i~LI~G-PPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
..+.+.+|+| -||.|||++.+.+...|...|.+||++-
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3445666665 4999999999999999999999998874
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.31 E-value=0.042 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=20.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
...+..|.||||+||||++..+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999988776543
No 255
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.31 E-value=0.27 Score=55.89 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=60.1
Q ss_pred ccHHHHHHHhhhccCCcCcCccc-cCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFE-VTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~-lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
|+..++.++-.- .|. +++-|.++| ...+++++.+..|||||.+.++-++.. + .
T Consensus 44 l~~~l~~~l~~~--------g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~--l---~---------- 100 (410)
T 2j0s_A 44 LREDLLRGIYAY--------GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC--L---D---------- 100 (410)
T ss_dssp CCHHHHHHHHHH--------TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHT--C---C----------
T ss_pred CCHHHHHHHHHc--------CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHH--H---h----------
Confidence 667777666432 344 788888877 456799999999999999987766542 0 0
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.++|+....|+.++.+.+.++-
T Consensus 101 -----------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 101 -----------------IQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp -----------------TTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred -----------------hccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 01122589999999999999998888763
No 256
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.31 E-value=0.079 Score=54.05 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=34.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
..+.+|.||.|+|||+.+...+......+.+|++..|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 47999999999999999998899999999999998865
No 257
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.30 E-value=0.082 Score=52.92 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=28.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
.+.+..|.||||+||||++..+...+...|..++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 456788999999999999888877776667665544
No 258
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.20 E-value=0.093 Score=61.26 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=42.8
Q ss_pred ccCHHHhhhhc--------CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCC
Q 041971 873 EVTDEQLEMIL--------SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGET 944 (1044)
Q Consensus 873 ~lt~~e~~iI~--------~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1044)
.||++|++++. ..++++|.|..||||||++...+-. +...+
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~------l~~~~------------------------- 73 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEA------LISTG------------------------- 73 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHH------HHHTT-------------------------
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHH------HHhcC-------------------------
Confidence 37777777774 2569999999999999987544421 11110
Q ss_pred CCCceeEEEEecCHHHHHHHHHHH
Q 041971 945 ERPILRQLFVTVSPKLCFAIKQHI 968 (1044)
Q Consensus 945 ~~~~l~q~FvT~s~~L~~~v~~~~ 968 (1044)
.-+.+++|.+...+.++++..
T Consensus 74 ---~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 74 ---ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---CCCEEEEESSHHHHHHHHHHH
T ss_pred ---CceEEEecCcHHHHHHHHhhh
Confidence 025678899999998887654
No 259
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.19 E-value=0.095 Score=53.77 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=27.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEE
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTL 81 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rIL 81 (1044)
+.+.+|.||||+||||++..+...+-..+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 468899999999999999888887766666663
No 260
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.18 E-value=0.038 Score=59.84 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhccc---------cCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 28 LNDSQAQAVLSCLRQMRC---------DHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 28 Ln~sQ~~AV~~~l~~~~~---------~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+.+.+.+......... .-..+ .+|.||||||||+++.++...+
T Consensus 44 g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 44 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc
Confidence 345666666655443211 11223 7999999999999988776554
No 261
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=93.16 E-value=0.054 Score=66.20 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=37.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
....+|.||+|||||+. ++..+... .+.++++||..++.++.+++.+.
T Consensus 155 rk~vlv~apTGSGKT~~---al~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYH---AIQKYFSA-KSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp CEEEEEECCTTSSHHHH---HHHHHHHS-SSEEEEESSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHH---HHHHHHhc-CCeEEEeCHHHHHHHHHHHHHhc
Confidence 36899999999999993 23333333 44588999999999999998643
No 262
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.15 E-value=0.072 Score=59.86 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=36.2
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN 87 (1044)
....+.++.|-+|+||||+.+++...+...|.|||++.-.-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34578889999999999999999999999999999998553
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.14 E-value=0.054 Score=54.42 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=20.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
....+|.||||+||||++..+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999988877665
No 264
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.12 E-value=0.24 Score=59.73 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHHHHHH
Q 041971 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTNVAIKELAARVVKLV 101 (1044)
Q Consensus 24 ~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~--~~rILv~A~TN~AVd~v~~rL~~~~ 101 (1044)
..+.|++-|+..+..... ....+|.+|.|+|||++++..+...+.. +.+|+++|+|...+..+.+++...+
T Consensus 160 ~~~~l~p~Q~~i~~~l~~-------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSS-------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCCCCHHHHHHHHHHHH-------CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHhhcc-------ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 357899999998876532 2679999999999999988766654443 4589999999999999988877665
Q ss_pred H
Q 041971 102 K 102 (1044)
Q Consensus 102 ~ 102 (1044)
.
T Consensus 233 ~ 233 (592)
T 3cpe_A 233 E 233 (592)
T ss_dssp T
T ss_pred H
Confidence 4
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.10 E-value=0.047 Score=54.15 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=19.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+..|.||||+||||++..+...+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999877665543
No 266
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.10 E-value=0.075 Score=58.49 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=24.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcE
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRT 80 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rI 80 (1044)
.+...+|+||||||||+++.++.......+.+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~ 56 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPL 56 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCe
Confidence 356789999999999998877766544444443
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.06 E-value=0.056 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=20.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+.+|.||||+||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999888776655
No 268
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.05 E-value=0.14 Score=53.31 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=32.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE-cCCHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC-TPTNVA 89 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~-A~TN~A 89 (1044)
-+.+|.||||+||||.+..+...|-..|..+.++ -|+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~ 47 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTP 47 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCH
Confidence 5788999999999999999999998888887655 444433
No 269
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.03 E-value=0.17 Score=53.67 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=53.6
Q ss_pred ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCce
Q 041971 873 EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPIL 949 (1044)
Q Consensus 873 ~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 949 (1044)
++++-|.++| ....++++.+..|||||.+.++-++.. + ..... .. .........
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~--l---~~~~~---~~---------------~~~~~~~~~ 101 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH--L---VCQDL---NQ---------------QRYSKTAYP 101 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--H---HTTCC------------------------CCBCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH--H---Hhhcc---cc---------------ccccccCCc
Confidence 5788888887 456799999999999999887766532 1 11100 00 000112236
Q ss_pred eEEEEecCHHHHHHHHHHHHHHHh
Q 041971 950 RQLFVTVSPKLCFAIKQHISQMKS 973 (1044)
Q Consensus 950 ~q~FvT~s~~L~~~v~~~~~~l~~ 973 (1044)
+.++++...-||.++.+.+.++..
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~ 125 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSL 125 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHHHHhc
Confidence 899999999999999888887643
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.95 E-value=0.062 Score=55.01 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
...+..|.||||+||||++..+...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999988776665
No 271
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.93 E-value=0.15 Score=53.92 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=48.0
Q ss_pred cCccccCHHHhhhhc---CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCC
Q 041971 869 DLPFEVTDEQLEMIL---SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETE 945 (1044)
Q Consensus 869 ~~pf~lt~~e~~iI~---~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1044)
.+++++++.|.+.+. ..++++|.|..|||||.+++.=+...
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------------------------------ 132 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------------------------------ 132 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------------------------------
T ss_pred cCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------------------------------
Confidence 345789999998773 45679999999999999986543221
Q ss_pred CCceeEEEEecCHHHHHHHHHHHHH
Q 041971 946 RPILRQLFVTVSPKLCFAIKQHISQ 970 (1044)
Q Consensus 946 ~~~l~q~FvT~s~~L~~~v~~~~~~ 970 (1044)
..+.++|+....|+.+..+.+.+
T Consensus 133 --~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 133 --STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp --CSCEEEEESSHHHHHHHHHHHGG
T ss_pred --CCCEEEEeCCHHHHHHHHHHHHh
Confidence 03578888888888888777665
No 272
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=92.90 E-value=0.39 Score=54.45 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHHHHHHH
Q 041971 25 SSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ--MKFRTLVCTPTNVAIKELAARVVKLVK 102 (1044)
Q Consensus 25 ~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~--~~~rILv~A~TN~AVd~v~~rL~~~~~ 102 (1044)
.+.|+|-|+..+..... ....+|..|-+.|||++++.++..++. .+.+|+++|+|...+.++.+++...+.
T Consensus 161 p~~L~p~Qk~il~~l~~-------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSS-------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp ECCCCHHHHHHHHHHHH-------SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhcc-------CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 46899999998875533 267999999999999998877766433 356899999999999999888887765
Q ss_pred H
Q 041971 103 E 103 (1044)
Q Consensus 103 ~ 103 (1044)
.
T Consensus 234 ~ 234 (385)
T 2o0j_A 234 L 234 (385)
T ss_dssp H
T ss_pred h
Confidence 3
No 273
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.84 E-value=0.043 Score=55.45 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=31.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVK 102 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~~ 102 (1044)
+.+|.||||+|||+.+..++.. +.+++.+|.....=+++.+|+..+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~ 48 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKD 48 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHh
Confidence 3799999999999998876543 66776666544445688888887754
No 274
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.84 E-value=0.062 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=20.0
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
|.-.+.+|.|+|||||||+...+...|
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHh
Confidence 334678999999999999887766554
No 275
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.83 E-value=0.066 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+.+|.||||+||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999888777655
No 276
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.82 E-value=0.078 Score=71.36 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=36.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN 87 (1044)
.....+|.||||||||+++.+++...+..|.++++.+..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 4689999999999999999999999999999999888764
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.82 E-value=0.068 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=20.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+.+|.||||+||||++..+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4688999999999999887766544
No 278
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.79 E-value=0.099 Score=58.81 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=32.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
.+.+..|.||.|+||||++..+...+...+.+|++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 45789999999999999999998888777888888764
No 279
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.77 E-value=0.096 Score=57.36 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=31.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.+..|.||+|+||||++..+...+...+.+|++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4577788999999999999999999888999987753
No 280
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.77 E-value=0.058 Score=61.48 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhc--------cccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 29 NDSQAQAVLSCLRQM--------RCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~--------~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
.+.+.+++...+... .........||+||||||||+++.++... .+..++.+..
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 455666666555221 01123467899999999999998877544 3555554443
No 281
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.75 E-value=0.08 Score=59.57 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=28.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhC-CCcEEE
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLV 82 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-~~rILv 82 (1044)
..++.+|.||.|+||||++.+++..+-.. +.+|+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 45799999999999999999988877654 555543
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.73 E-value=0.11 Score=53.03 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCc
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFR 79 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~r 79 (1044)
.+.+..|.||||+||||++..+...+-..|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 45789999999999999988887777644543
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.68 E-value=0.063 Score=57.29 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHH-----HhccccCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 28 LNDSQAQAVLSCL-----RQMRCDHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 28 Ln~sQ~~AV~~~l-----~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+++.|.+.+..-+ ......+.+.+.+|.||||+||||++..+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 6 YTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4555555443333 222333456788999999999999887776543
No 284
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.66 E-value=0.095 Score=58.17 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=34.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN 87 (1044)
.+.++.|-+|+||||+.+++...+...|.|||++..--
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 68899999999999999999999999999999988643
No 285
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.64 E-value=0.16 Score=62.97 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=54.0
Q ss_pred CccccCHHHhhhhc---------CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhccc
Q 041971 870 LPFEVTDEQLEMIL---------SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEG 940 (1044)
Q Consensus 870 ~pf~lt~~e~~iI~---------~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1044)
+||++|+.|.++|. .+.+++|.|..|+|||.++++=++..- . .
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l-----~-~---------------------- 416 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY-----E-A---------------------- 416 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH-----H-H----------------------
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH-----H-c----------------------
Confidence 58899999999883 245999999999999999987776531 0 0
Q ss_pred CCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 941 LGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 941 ~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
..+.++++....||.++.+.+.++-
T Consensus 417 -------g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 417 -------GFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp -------TSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred -------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 0478999999999999988877753
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.63 E-value=0.065 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.||||+||||++..+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999988776654
No 287
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.62 E-value=0.094 Score=60.34 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.+.+|.||+|+||||++..+...+...|.+|+++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4577888999999999999999999988999987763
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.62 E-value=0.073 Score=54.40 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+.+|.||||+||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578999999999999988887665
No 289
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.60 E-value=0.077 Score=54.20 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
-+.+|.||||+||||++..+...+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999888777665
No 290
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.59 E-value=0.41 Score=55.19 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=62.1
Q ss_pred cccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
.|+..++.++-.- .|. +.|+-|.+.| ...+++++.+..|+|||.+.++-++.. +. ... .
T Consensus 62 ~l~~~l~~~l~~~------g~~-~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~--l~---~~~----~-- 123 (434)
T 2db3_A 62 DLRDIIIDNVNKS------GYK-IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK--LL---EDP----H-- 123 (434)
T ss_dssp CCCHHHHHHHHHT------TCC-SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--HH---HSC----C--
T ss_pred CCCHHHHHHHHHc------CCC-CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHH--HH---hcc----c--
Confidence 3677777776432 111 4788888877 567899999999999999887766542 11 100 0
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
.......+.++++....||.++.+.+.++.
T Consensus 124 ----------------~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 124 ----------------ELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp ----------------CCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred ----------------ccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 011223789999999999999988888763
No 291
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.53 E-value=0.068 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.||||+||||+...+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999887776654
No 292
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.51 E-value=0.27 Score=55.28 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=60.6
Q ss_pred cccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
.+++.++..+-.- .| .++++-|.++| ...+++++.+..|+|||.+.++-++.. + .
T Consensus 27 ~l~~~l~~~l~~~------g~-~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--l---~---------- 84 (394)
T 1fuu_A 27 ELDENLLRGVFGY------GF-EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR--I---D---------- 84 (394)
T ss_dssp CCCHHHHHHHHHH------TC-CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHH--C---C----------
T ss_pred CCCHHHHHHHHHc------CC-CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH--h---h----------
Confidence 4677777666442 11 26889999887 356799999999999999987666532 0 0
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.++|+.+..|+.++.+.+.++.
T Consensus 85 -----------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 85 -----------------TSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp -----------------TTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred -----------------ccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 00122689999999999999988887763
No 293
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.50 E-value=0.11 Score=58.07 Aligned_cols=39 Identities=28% Similarity=0.303 Sum_probs=33.4
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
....+..|.||||+||||++..++..+...+.+|.+.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 456789999999999999999998888777888887764
No 294
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.50 E-value=0.067 Score=61.78 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=20.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
++-.++.||||||||+++.++...+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568999999999999887776654
No 295
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.48 E-value=0.066 Score=53.77 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.||||+||||++..+...+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999988876654
No 296
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.48 E-value=0.12 Score=65.31 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=28.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHh-------CCCcEEEEcC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQ-------MKFRTLVCTP 85 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~-------~~~rILv~A~ 85 (1044)
....++.||||||||+++..++..+.. .+.+++.+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 345689999999999999988888765 3566666544
No 297
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.47 E-value=0.33 Score=59.30 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=61.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHH
Q 041971 20 FGPSLSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVK 99 (1044)
Q Consensus 20 ~~~~~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~ 99 (1044)
|-....+..+.-|..|+......+..+ ..-.++.|.+|+|||.+++.++..+ +.++|+++++...+.++.+-|..
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~l~~~~~~~--~~~~~l~g~~gs~k~~~~a~~~~~~---~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEKLVKGIQEG--KKHQTLLGATGTGKTFTVSNLIKEV---NKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHHHHHHHHTT--CSEEEEEECTTSCHHHHHHHHHHHH---CCCEEEECSSHHHHHHHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHHHHHHHhcC--CCcEEEECcCCcHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHH
Confidence 556677899999999998776553221 1235788999999999999887654 66899999999999999999987
Q ss_pred HHH
Q 041971 100 LVK 102 (1044)
Q Consensus 100 ~~~ 102 (1044)
++.
T Consensus 80 ~~~ 82 (661)
T 2d7d_A 80 FFP 82 (661)
T ss_dssp HCT
T ss_pred HcC
Confidence 753
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.41 E-value=0.083 Score=54.03 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+.+|.||||+||||++..+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999888776665
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.41 E-value=0.07 Score=57.04 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.|||||||||++..++..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 367899999999999988887654
No 300
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.34 E-value=0.078 Score=58.70 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=35.1
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHH------------hCC----CcEEEEcCCHH-HHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILL------------QMK----FRTLVCTPTNV-AIKELAARV 97 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll------------~~~----~rILv~A~TN~-AVd~v~~rL 97 (1044)
....+++|.||||+|||+++..++.... ..| .+++.++..+. -.+.+..++
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 3467999999999999999998887642 234 67887776543 134444443
No 301
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.33 E-value=0.12 Score=58.08 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=33.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
...+..|.||||.||||++..++..+...+.+|.|++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 35788999999999999999999988888888888775
No 302
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.30 E-value=0.045 Score=56.33 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=26.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+.+|.||||+||||++..+...+-..|..+.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 568999999999999998888876666666544
No 303
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.30 E-value=0.12 Score=60.28 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=32.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+.+..|.||.|+||||++..+...+...+.+|++.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 4668999999999999999999888877888998874
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.30 E-value=0.074 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+|.||||+||||+...+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47889999999999887776554
No 305
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.27 E-value=0.25 Score=54.24 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=50.8
Q ss_pred ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCce
Q 041971 873 EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPIL 949 (1044)
Q Consensus 873 ~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 949 (1044)
++++-|.++| ...++++|.+..|+|||++.++-++.. ..
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------------------------------~~ 57 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------------------------------GM 57 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------------------------------TC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------------------------------cC
Confidence 4789898887 357799999999999999887665431 05
Q ss_pred eEEEEecCHHHHHHHHHHHHHHH
Q 041971 950 RQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 950 ~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
+.++|+....|+.++.+.+.++.
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CEEEEeCCHHHHHHHHHHHHHHh
Confidence 78999999999999988888763
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.27 E-value=0.083 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+.+|.||||+||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999887777665
No 307
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.26 E-value=0.076 Score=54.83 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHH
Q 041971 52 QLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+|.||||+||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999888776654
No 308
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.24 E-value=0.12 Score=62.35 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
...+.++.|.+|+||||+.+++...+...|.|||++...
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 457899999999999999999999999999999998755
No 309
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.21 E-value=0.12 Score=63.82 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=59.2
Q ss_pred cccccccHHHHHHHhhhccCCcCcCcc-ccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhh
Q 041971 846 MKFYRLSSVVVSHLLSDRVGRELDLPF-EVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFY 921 (1044)
Q Consensus 846 ~kf~~~s~~~~~~~l~~~~~~~~~~pf-~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~ 921 (1044)
|+|-.|...+-..+...+ . +++| ++++-|.++| ....+++|.|..|+||||++.+-++.. +. +
T Consensus 1 m~f~~l~~~l~~~~~~~l-~---~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~--~~----~--- 67 (702)
T 2p6r_A 1 MKVEELAESISSYAVGIL-K---EEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVRE--AI----K--- 67 (702)
T ss_dssp CCSHHHHHHHHHHHHHHH-H---CC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHH--HH----T---
T ss_pred CchhhhhhccCHHHHHHH-H---hCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHH--HH----h---
Confidence 556665433333333332 1 2356 7888888877 457899999999999999998777642 11 0
Q ss_pred ccCCccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHH
Q 041971 922 GVNNSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
..+.++++....||.++.+.+.++
T Consensus 68 --------------------------~~~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 68 --------------------------GGKSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp --------------------------TCCEEEEESSHHHHHHHHHHHTTT
T ss_pred --------------------------CCcEEEEeCcHHHHHHHHHHHHHH
Confidence 147899999999999998877543
No 310
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.21 E-value=0.21 Score=52.78 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=33.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCc-E-EEEcCCHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFR-T-LVCTPTNVAI 90 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~r-I-Lv~A~TN~AV 90 (1044)
+-+.+|.||||+||||.+..+...|-..|.. + ++-.|+...+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~ 70 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLL 70 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHH
Confidence 3678999999999999999999999888887 4 3445554433
No 311
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.20 E-value=0.11 Score=54.58 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=28.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
..+.+|.||||+||||.+..+...+-. +..++.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 467889999999999999888888766 7777655
No 312
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.18 E-value=0.082 Score=55.15 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=21.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+.+|.||||+||||.+..++..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35788999999999999887776654
No 313
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.17 E-value=0.081 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.||||+||||++..+...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999887776654
No 314
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.14 E-value=0.12 Score=53.30 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHH-hCCCcEEEEc
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCT 84 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll-~~~~rILv~A 84 (1044)
...+.++.... .+.+.+.+|.||||+||||++..+...+- ..|.++.++.
T Consensus 11 ~~~~~~r~~~~--------~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 11 ALTRSERTELR--------NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CCCHHHHHHHH--------TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCHHHhhccc--------CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44566666632 23457889999999999999888877765 5566565554
No 315
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.13 E-value=0.083 Score=65.81 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh
Q 041971 30 DSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ 75 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~ 75 (1044)
+...+.+..++.. ......|+.||||||||+++.++...+..
T Consensus 186 ~~~i~~l~~~l~~----~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 186 SKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp HHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhC----CCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 4444455555443 33445799999999999999888888755
No 316
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.06 E-value=0.08 Score=61.89 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=23.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.-.++.||||||||+++.++...+ +...+.++
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~---~~~f~~is 81 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA---NVPFFHIS 81 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCC
Confidence 448899999999999998877654 44554443
No 317
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.05 E-value=0.15 Score=52.89 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=34.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTN 87 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN 87 (1044)
...+.+|.||.|+||||.+..++..+...+.++++..|.-
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 4589999999999999988888888888999999998754
No 318
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.02 E-value=0.11 Score=58.89 Aligned_cols=36 Identities=25% Similarity=0.517 Sum_probs=29.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhC-CCcEEEE
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVC 83 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-~~rILv~ 83 (1044)
..++.+|.||+|+||||++..++..+-.. ..+|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 46899999999999999999988876654 5566553
No 319
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.01 E-value=0.13 Score=57.38 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=32.9
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
....+..|.||||+||||++..++..+...+.+|.+++.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 345788899999999999999999888888888877653
No 320
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=92.00 E-value=0.23 Score=64.23 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=54.9
Q ss_pred CcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCC
Q 041971 868 LDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGET 944 (1044)
Q Consensus 868 ~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1044)
-.+||.+++-|.++| ....+++|.|..|+|||++.++=++.. + . .
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~--l---~-~-------------------------- 226 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS--L---K-N-------------------------- 226 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH--H---H-T--------------------------
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH--H---h-c--------------------------
Confidence 468999999999998 457899999999999999987766442 1 1 0
Q ss_pred CCCceeEEEEecCHHHHHHHHHHHHHH
Q 041971 945 ERPILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 945 ~~~~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
..+.+|++....|+.++.+.|.++
T Consensus 227 ---g~rvlvl~PtraLa~Q~~~~l~~~ 250 (1108)
T 3l9o_A 227 ---KQRVIYTSPIKALSNQKYRELLAE 250 (1108)
T ss_dssp ---TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEcCcHHHHHHHHHHHHHH
Confidence 147888899999999987777765
No 321
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.99 E-value=0.085 Score=53.78 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=25.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
+.+.+|.||||+||||++..+...+ .|.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 4578999999999999988877665 345555443
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.99 E-value=0.09 Score=54.23 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+.+|.||+|+||||++..++..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35789999999999999988776543
No 323
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.98 E-value=0.32 Score=54.55 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=59.8
Q ss_pred ccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cC--CCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LS--PRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNN 925 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~--~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~ 925 (1044)
++..++.++..- .+ .++++-|.++| .. +++++|.+..|+|||++.++-++.. + .
T Consensus 12 l~~~l~~~l~~~------~~-~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~--~---~--------- 70 (395)
T 3pey_A 12 LAPELLKGIYAM------KF-QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTR--V---N--------- 70 (395)
T ss_dssp CCHHHHHHHHHT------TC-CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHH--C---C---------
T ss_pred CCHHHHHHHHHC------CC-CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH--h---c---------
Confidence 466676666552 11 36788888887 23 3899999999999999988766542 0 0
Q ss_pred ccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 926 SVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.+||+.+..|+.++.+.+.++.
T Consensus 71 ------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 71 ------------------PEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp ------------------TTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ------------------cCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 01122579999999999999998888763
No 324
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.97 E-value=0.14 Score=63.64 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=27.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
..+++||||||||+++.++...+...+..++.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 6999999999999999999888876666555443
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.92 E-value=0.096 Score=52.83 Aligned_cols=24 Identities=42% Similarity=0.536 Sum_probs=20.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
..+.+|.|||||||||+...+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999988777655
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.83 E-value=0.074 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHH
Q 041971 52 QLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+|.||||+||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999887776543
No 327
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.82 E-value=0.13 Score=55.31 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=28.0
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhC-CCcEEE
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLV 82 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~-~~rILv 82 (1044)
...++.+|.||.|+||||++..++..+-.. ..+|++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 456899999999999999999887766443 455554
No 328
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.81 E-value=0.096 Score=52.79 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=19.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
...|.||+|+||||++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999987777665
No 329
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.81 E-value=0.078 Score=51.18 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.6
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..+.++++.|.+|||||+++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45779999999999999875
No 330
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.79 E-value=0.078 Score=62.36 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHhcc---------ccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 29 NDSQAQAVLSCLRQMR---------CDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~---------~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
...|.+.+...+.... .-..+.-.||+||||||||+++.++...+ +..++.+
T Consensus 209 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~v 269 (489)
T 3hu3_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLI 269 (489)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 3566666666554310 01234568999999999999988775543 4554443
No 331
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.75 E-value=0.093 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.||||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999887776654
No 332
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.75 E-value=0.27 Score=51.01 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=34.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCC-cEE-EEcCCHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKF-RTL-VCTPTNVAIKELAA 95 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~-rIL-v~A~TN~AVd~v~~ 95 (1044)
-+.+|.||+|+||||.+..+...|-..|. .+. +--|+...+-+.++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir 51 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLR 51 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHH
Confidence 57889999999999999999999988887 544 44456554444333
No 333
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.74 E-value=0.11 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=20.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+-..+|.||||+||||++..+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899999999999888776655
No 334
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.74 E-value=0.092 Score=62.67 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=22.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
...+.++.||||||||+++.++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999888776665
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.73 E-value=0.087 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
..+.+|.||||+||||++..+...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999988777655
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.73 E-value=0.097 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+|.||||+||||++..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999888777665
No 337
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=91.71 E-value=0.13 Score=55.14 Aligned_cols=50 Identities=6% Similarity=-0.037 Sum_probs=40.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVV 98 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~ 98 (1044)
...+.+|.|+||||||++....+..-+.+|.++++++..- ...++..+..
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~ 69 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILS 69 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHH
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHH
Confidence 4688999999999999888899999999999999999843 3445555554
No 338
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.68 E-value=0.083 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+.+|.||||+||||++..+...+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5688999999999999888776654
No 339
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.68 E-value=0.18 Score=52.90 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=29.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhC----CCcEEEE-cCCHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQM----KFRTLVC-TPTNVA 89 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~----~~rILv~-A~TN~A 89 (1044)
.-+.+|.||||+||||.+..+...|-.. |..|.++ -|+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~ 70 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTR 70 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCCh
Confidence 3678899999999999999999888776 8887544 354443
No 340
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.63 E-value=0.45 Score=56.70 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=61.2
Q ss_pred cccHHHHHHHhhhccCCcCcCccc-cCHHHhhhh---c--CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFE-VTDEQLEMI---L--SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGV 923 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~-lt~~e~~iI---~--~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~ 923 (1044)
.++..++.++-. +.|. +++-|.++| . ...++++.+..|||||.|.++-++.. +. ...
T Consensus 78 ~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~--l~---~~~---- 140 (563)
T 3i5x_A 78 VLDKEIHKAITR--------MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQH--LI---NTK---- 140 (563)
T ss_dssp SSCHHHHHHHHT--------TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHH--HH---HTT----
T ss_pred CCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHH--HH---hcc----
Confidence 366666665532 1333 899999988 2 35699999999999999988776543 11 100
Q ss_pred CCccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHh
Q 041971 924 NNSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKS 973 (1044)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~ 973 (1044)
.......+.|+|+...-||.++.+.+.++..
T Consensus 141 -------------------~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 141 -------------------FDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp -------------------TSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred -------------------ccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 0111236899999999999999999888643
No 341
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.58 E-value=0.096 Score=52.65 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
...+.+|.||+|+||||++..++..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999988876643
No 342
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.56 E-value=0.15 Score=60.27 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEE
Q 041971 28 LNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLV 82 (1044)
Q Consensus 28 Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv 82 (1044)
+++.+.+-+..++.. ..+.+|.||+|+||||++.+++..+ ....+++.
T Consensus 245 ~~~~~l~~l~~~v~~------g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giit 292 (511)
T 2oap_1 245 VPSGVLAYLWLAIEH------KFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVS 292 (511)
T ss_dssp SCHHHHHHHHHHHHT------TCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEE
T ss_pred CCHHHHHHHHHHHhC------CCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEE
Confidence 667777777666664 4579999999999999998876543 44444443
No 343
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.55 E-value=0.064 Score=53.67 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=15.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
+.+.+|.|+||+||||++..+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999988776544
No 344
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.52 E-value=0.11 Score=54.92 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+..|.||||+||||++..+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999988877655
No 345
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.50 E-value=0.3 Score=57.73 Aligned_cols=72 Identities=19% Similarity=0.115 Sum_probs=54.7
Q ss_pred ccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCC
Q 041971 871 PFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERP 947 (1044)
Q Consensus 871 pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1044)
||++++-|.++| ...+++++.+..|+|||.+.++=++.. +. .. ....
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~--~~---~~-------------------------~~~~ 51 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHH--LK---KF-------------------------PCGQ 51 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--HH---TC-------------------------CSSC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHH--HH---hc-------------------------ccCC
Confidence 789999999988 457899999999999999987755331 11 00 0011
Q ss_pred ceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 948 ILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 948 ~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
..+.++|+....|+.++.+.+.++-
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3678999999999999988887763
No 346
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.49 E-value=0.11 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+..|.||||+||||++..+...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4688999999999999887665443
No 347
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.49 E-value=0.18 Score=55.76 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 30 DSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+.+.+...+.. .++.+|.||+|+|||+++..++..+
T Consensus 18 ~~el~~L~~~l~~------~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 18 EEESRKLEESLEN------YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc------CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 5667777777764 2799999999999999998876653
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.45 E-value=0.11 Score=53.92 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=20.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+.+|.||||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999888776654
No 349
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.44 E-value=0.16 Score=56.61 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=34.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
..+.++.|-+|+||||+.+++...+...|.+||++.--
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 47899999999999999999999999999999998865
No 350
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.44 E-value=0.15 Score=60.58 Aligned_cols=42 Identities=31% Similarity=0.277 Sum_probs=34.3
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNV 88 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~ 88 (1044)
....+.+|.||||+||||++..++..+...|.+++..++.+.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES 320 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 346899999999999999999988887777888877666543
No 351
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.24 Score=63.42 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=53.9
Q ss_pred CcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCC
Q 041971 868 LDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGET 944 (1044)
Q Consensus 868 ~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1044)
-.|||++++-|.++| ....+++|.+..|+|||+++.+-+... . . .
T Consensus 81 ~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~---l--~-~-------------------------- 128 (1010)
T 2xgj_A 81 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS---L--K-N-------------------------- 128 (1010)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH---H--H-T--------------------------
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH---h--c-c--------------------------
Confidence 478999999999988 346799999999999999987655432 1 0 0
Q ss_pred CCCceeEEEEecCHHHHHHHHHHHHHH
Q 041971 945 ERPILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 945 ~~~~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
..+.+|++...-|+.++.+.+.++
T Consensus 129 ---g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 129 ---KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp ---TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred ---CCeEEEECChHHHHHHHHHHHHHH
Confidence 147888898999999887777664
No 352
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.37 E-value=0.16 Score=57.93 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=37.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAI 90 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AV 90 (1044)
.++-++|.||+|+|||+++..++..+...|.+|++.=+.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYK 76 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHH
Confidence 3577899999999999999999999988999999998876543
No 353
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.36 E-value=0.12 Score=54.85 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+-..+|.||||+||||++..+...+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999888777655
No 354
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.33 E-value=0.097 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
.+.+|.||||+||||++..+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4788999999999999988854
No 355
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.32 E-value=0.12 Score=53.72 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.5
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHh
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQ 75 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~ 75 (1044)
...+..|.||||+||||++..++..+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4579999999999999999888776543
No 356
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.30 E-value=0.11 Score=52.88 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
..+..|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999988877654
No 357
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.29 E-value=0.19 Score=55.86 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=34.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
..+.++.|-+|.||||+.+++...|...|.|||++.--
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D 56 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 47889999999999999999999999999999988654
No 358
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.28 E-value=0.18 Score=52.74 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=34.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
..+.++.||.|+||||.+..++..+...|.+|++..|.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 47899999999999999999999999999999998864
No 359
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.21 E-value=0.2 Score=51.57 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
....+..|.||+|+||||++..+...+-..|..+-.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~ 57 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 45678999999999999998877776654443344443
No 360
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.21 E-value=0.53 Score=56.50 Aligned_cols=86 Identities=20% Similarity=0.343 Sum_probs=60.3
Q ss_pred ccHHHHHHHhhhccCCcCcCccc-cCHHHhhhh---c--CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 041971 851 LSSVVVSHLLSDRVGRELDLPFE-VTDEQLEMI---L--SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVN 924 (1044)
Q Consensus 851 ~s~~~~~~~l~~~~~~~~~~pf~-lt~~e~~iI---~--~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~ 924 (1044)
++..++..+- . +.|. +++-|.++| . ...++++.+..|||||.|.++-++.. +.. ..
T Consensus 28 l~~~l~~~l~-~-------~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~--l~~---~~----- 89 (579)
T 3sqw_A 28 LDKEIHKAIT-R-------MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQH--LIN---TK----- 89 (579)
T ss_dssp SCHHHHHHHH-T-------TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHH--HHH---TT-----
T ss_pred CCHHHHHHHH-H-------CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHH--HHh---cc-----
Confidence 5665555543 2 2444 899999988 2 45699999999999999987766542 111 00
Q ss_pred CccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 925 NSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
.......+.|+|+....||.++.+.+.++.
T Consensus 90 ------------------~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 90 ------------------FDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp ------------------TSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred ------------------ccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 001123789999999999999999988864
No 361
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.20 E-value=0.14 Score=56.85 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 30 DSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 30 ~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+.+.+.. +.. ++.+|.||||+|||+++..++..+
T Consensus 19 ~~el~~L~~-l~~-------~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRA-------PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCS-------SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-------CcEEEECCCCCCHHHHHHHHHHhc
Confidence 455566665 542 699999999999999998877654
No 362
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.15 E-value=0.22 Score=51.36 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=27.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
....+|.|+||+||||++..++..+... .++.++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~ 64 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAML 64 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEe
Confidence 4688999999999999999998887444 5665544
No 363
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.12 E-value=0.12 Score=52.80 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=21.9
Q ss_pred cCCCceEEEEccCCCcHHHHHHHHHHH
Q 041971 46 DHKATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 46 ~~~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
+|.+-+..|.|||||||||+...+...
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 566788999999999999988776654
No 364
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.12 E-value=0.14 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
...+|.|||||||||++..+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999888887765
No 365
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.10 E-value=0.13 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=18.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+|.|+||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999887776654
No 366
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.07 E-value=0.23 Score=62.60 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+..+|.||||||||+++.++...+...+..++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 5789999999999999988888877655555444
No 367
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.02 E-value=0.12 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+|.||||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999888777665
No 368
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.02 E-value=0.11 Score=50.34 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.0
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..+.++++.|.+||||||++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46779999999999999987
No 369
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=91.01 E-value=0.36 Score=54.71 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=60.1
Q ss_pred cccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNS 926 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~ 926 (1044)
.+++.++..+-.- .+ -++++-|.++| ...+++++.+..|+|||++.++-++.. + .
T Consensus 46 ~l~~~~~~~l~~~------~~-~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~--~---~---------- 103 (414)
T 3eiq_A 46 NLSESLLRGIYAY------GF-EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ--I---E---------- 103 (414)
T ss_dssp CCCHHHHHHHHHT------TC-CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHH--C---C----------
T ss_pred CCCHHHHHHHHHc------CC-CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHH--H---h----------
Confidence 4677676665442 11 24788888877 467799999999999999988766542 0 0
Q ss_pred cccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 927 VTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
......+.++|+....|+.++.+.+.++-
T Consensus 104 -----------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 132 (414)
T 3eiq_A 104 -----------------LDLKATQALVLAPTRELAQQIQKVVMALG 132 (414)
T ss_dssp -----------------TTSCSCCEEEECSSHHHHHHHHHHHHHHG
T ss_pred -----------------hcCCceeEEEEeChHHHHHHHHHHHHHHh
Confidence 00112578999999999999988888864
No 370
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.97 E-value=0.093 Score=61.70 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHhcccc--------CCCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 29 NDSQAQAVLSCLRQMRCD--------HKATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 29 n~sQ~~AV~~~l~~~~~~--------~~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+...+......+... ..+.-.+|.||||||||+++.++...+
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456666666555432211 112238999999999999988776553
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.97 E-value=0.13 Score=53.40 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
-..+|.||||+||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999888777765
No 372
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.95 E-value=0.13 Score=54.13 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=30.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.+ .|-+|+||||+.+.+...|...|.|||++-.
T Consensus 3 I~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 36 (254)
T 3kjh_A 3 LAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDG 36 (254)
T ss_dssp EEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEE
T ss_pred EEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445 8999999999999999999999999988753
No 373
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.87 E-value=0.14 Score=58.02 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=24.9
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEE
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLV 82 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv 82 (1044)
..+.+.+|.|||||||||++..+...+ +..++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 345689999999999999998877643 344544
No 374
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.86 E-value=0.13 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=18.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+.+|.||||+||||....++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35788999999999877766554
No 375
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.80 E-value=0.22 Score=55.77 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=34.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHH--hCCCcEEEEcCC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILL--QMKFRTLVCTPT 86 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll--~~~~rILv~A~T 86 (1044)
..+.++.|-+|+||||+.+++...+. ..|.+||++.--
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 47999999999999999999999999 899999988864
No 376
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.79 E-value=0.37 Score=57.03 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=52.6
Q ss_pred CccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCC
Q 041971 870 LPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETER 946 (1044)
Q Consensus 870 ~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1044)
-+|++++-|.++| ....+++|.+..|+|||.+.++=++.. + ... ...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~--~---~~~-------------------------~~~ 53 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHH--F---QNM-------------------------PAG 53 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH--H---HTC-------------------------CSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHH--H---HhC-------------------------ccc
Confidence 3789999999988 457799999999999999987655432 1 100 011
Q ss_pred CceeEEEEecCHHHHHHHHHHHHHHHh
Q 041971 947 PILRQLFVTVSPKLCFAIKQHISQMKS 973 (1044)
Q Consensus 947 ~~l~q~FvT~s~~L~~~v~~~~~~l~~ 973 (1044)
...+.+||+...-|+.++.+.+.++-.
T Consensus 54 ~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 54 RKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp CCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 136789999999999999888887643
No 377
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.73 E-value=0.084 Score=52.89 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.9
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
...++|+|.+||||||.+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999965
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.72 E-value=0.12 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=20.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+.+|.||||+||||++..+...+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999887776653
No 379
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.71 E-value=0.58 Score=57.66 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=51.9
Q ss_pred cc-ccCHHHhhhh----cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCC
Q 041971 871 PF-EVTDEQLEMI----LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETE 945 (1044)
Q Consensus 871 pf-~lt~~e~~iI----~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1044)
+| .+++-|.++| ....+++|.|..|+||||++.+=++.. +. ..
T Consensus 27 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~--~~---~~--------------------------- 74 (715)
T 2va8_A 27 GIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISF--LL---KN--------------------------- 74 (715)
T ss_dssp SCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHH--HH---HS---------------------------
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHH--HH---HC---------------------------
Confidence 56 7899999887 346799999999999999998766542 11 00
Q ss_pred CCceeEEEEecCHHHHHHHHHHHHHH
Q 041971 946 RPILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 946 ~~~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
..+.++++....||.++.+.+.++
T Consensus 75 --~~~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 75 --GGKAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp --CSEEEEECSCHHHHHHHHHHHGGG
T ss_pred --CCeEEEEeCcHHHHHHHHHHHHHh
Confidence 147899999999999998877544
No 380
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.70 E-value=0.23 Score=51.43 Aligned_cols=34 Identities=21% Similarity=0.086 Sum_probs=29.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
.+.+..+-+|.|||++.+.++..|.+.|.|||++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 3555666799999999999999999999999985
No 381
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.67 E-value=0.22 Score=52.03 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHh-CCCcEEE-E-cCCHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLV-C-TPTNVAIKE 92 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~-~~~rILv-~-A~TN~AVd~ 92 (1044)
.+-+.+|.|++|+||||.+..+...|-. .|..+.+ + -|....+-+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~ 67 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNE 67 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHH
Confidence 3567888999999999999999999988 8877765 3 456544433
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.64 E-value=0.13 Score=53.03 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHH
Q 041971 52 QLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+|.||||+||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999888877765
No 383
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.60 E-value=0.17 Score=54.96 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCccHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~ 902 (1044)
.+.+++|.|.+||||||.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4679999999999999965
No 384
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=90.58 E-value=0.35 Score=60.55 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 24 LSSTLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 24 ~~~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~---~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
....|-|.|++||...+.. .....-.++.-+.|+|||-++.+++..++. .+.++||++|+ ..+.+-.+.+.+.
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~---~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 308 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFL---WSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPL-STMPAWLDTFEKW 308 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHH---HTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCT-TTHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH---hhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECc-hHHHHHHHHHHHH
Confidence 3568999999999876643 223456789999999999998888877753 35689999994 4567777666654
No 385
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.45 E-value=0.1 Score=51.94 Aligned_cols=19 Identities=26% Similarity=0.697 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCccHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~ 902 (1044)
.+.+++|.|.+||||||.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SSCEEEEECCTTSCHHHHH
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 4678999999999999976
No 386
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.42 E-value=0.11 Score=55.45 Aligned_cols=19 Identities=37% Similarity=0.737 Sum_probs=16.8
Q ss_pred CCCcEEEEecCCccHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~ 902 (1044)
.|.+++|.|.+||||||.+
T Consensus 44 ~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999965
No 387
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.41 E-value=0.16 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+..|.||||+||||++..+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999877665543
No 388
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.37 E-value=0.44 Score=59.46 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=46.3
Q ss_pred ccCHHHhhhhc---CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCce
Q 041971 873 EVTDEQLEMIL---SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPIL 949 (1044)
Q Consensus 873 ~lt~~e~~iI~---~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 949 (1044)
.|+++|.+.|. ..+.++|.|..||||||++.-.+..... .. .-
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~-----~~-----------------------------~~ 405 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSK-----IH-----------------------------KD 405 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHH-----HH-----------------------------CC
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh-----CC-----------------------------CC
Confidence 57888888883 3556899999999999998765533211 00 14
Q ss_pred eEEEEecCHHHHHHHHHHHHH
Q 041971 950 RQLFVTVSPKLCFAIKQHISQ 970 (1044)
Q Consensus 950 ~q~FvT~s~~L~~~v~~~~~~ 970 (1044)
+.+.+|.|..-+.++.+.+.+
T Consensus 406 ~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 406 RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CEEEEESSHHHHHHHHHHHHH
T ss_pred eEEEEcCcHHHHHHHHHHHHh
Confidence 678889999988888776654
No 389
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.37 E-value=0.22 Score=57.48 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=38.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIK 91 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd 91 (1044)
+.-.+|.||||+|||+++..++..++..|.+++|.=|......
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4679999999999999999999999999999999999887753
No 390
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=90.33 E-value=0.25 Score=52.62 Aligned_cols=35 Identities=34% Similarity=0.375 Sum_probs=31.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
-+.++.+-+|+||||+.+.+...|...|.+||++-
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46677889999999999999999999999999874
No 391
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.27 E-value=0.36 Score=52.45 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.0
Q ss_pred ceEEEE---ccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 50 TIQLIW---GPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 50 ~i~LI~---GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
.+..|. +-+|+||||+.+.+...|...|.+||++
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 445555 4899999999999999999999999985
No 392
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.26 E-value=0.21 Score=66.47 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=36.9
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNV 88 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~ 88 (1044)
....+.+|.||||+|||+++..++..+...+.++++.+.-..
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 457799999999999999999999999988889998876544
No 393
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.25 E-value=0.52 Score=56.96 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=43.9
Q ss_pred CHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCceeE
Q 041971 875 TDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPILRQ 951 (1044)
Q Consensus 875 t~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q 951 (1044)
+++|++.| ...+.++|.|..||||||++..-+-....+. .....+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~-------------------------------~~~~~~v 199 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-------------------------------DGERCRI 199 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------------------------------SSCCCCE
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------------------------------hcCCCeE
Confidence 56677766 4577999999999999997654332211110 0012567
Q ss_pred EEEecCHHHHHHHHHHHHH
Q 041971 952 LFVTVSPKLCFAIKQHISQ 970 (1044)
Q Consensus 952 ~FvT~s~~L~~~v~~~~~~ 970 (1044)
+.++.+..++.++.+.+..
T Consensus 200 ll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 200 RLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp EEEBSSHHHHHHHHHHHTH
T ss_pred EEEeCChhHHHHHHHHHHH
Confidence 7788899999988776654
No 394
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.23 E-value=0.26 Score=53.98 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=31.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
..+..|.|-+|+||||+.+.+...|...|.+||++=
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 355666699999999999999999999999999873
No 395
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.20 E-value=0.19 Score=60.87 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
....+|+||||||||+++.++...+
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4689999999999999888777654
No 396
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.18 E-value=0.13 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+..|.||+|+||||++..++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578899999999999888776654
No 397
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.15 E-value=0.14 Score=52.33 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
+..|.||||+||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998876644
No 398
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.11 E-value=0.26 Score=52.69 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=28.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 52 QLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
..|.|-.|+||||+.+.+...|...|.+||++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 34479999999999999999999999999885
No 399
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.09 E-value=0.25 Score=61.39 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHh
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQ 75 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~ 75 (1044)
.....+|.||||||||+++..+...+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4456799999999999999988887755
No 400
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.07 E-value=0.11 Score=52.87 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=16.2
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+.+++|.|.+||||||.+
T Consensus 54 ~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 479999999999999975
No 401
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.01 E-value=0.11 Score=64.27 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=25.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
.+.=.|+.||||||||+++.+++.. .|..++.+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e---lg~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE---TGAFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT---TTCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH---hCCeEEEEE
Confidence 3455899999999999998776654 366666554
No 402
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.01 E-value=0.18 Score=57.52 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHh------CCCcEEEEcC
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQ------MKFRTLVCTP 85 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~------~~~rILv~A~ 85 (1044)
....+++|.||||+|||+++..++...+. .+.+++++..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 34689999999999999999877655543 2345655543
No 403
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.98 E-value=0.2 Score=48.85 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=23.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHh
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQ 75 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~ 75 (1044)
+++.+|.||.|+|||+++-++...|..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 479999999999999999888877643
No 404
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.97 E-value=0.11 Score=51.67 Aligned_cols=20 Identities=30% Similarity=0.684 Sum_probs=17.1
Q ss_pred CCCcEEEEecCCccHHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVLT 903 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~l 903 (1044)
.+.+++|.|.+||||||.+-
T Consensus 42 ~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHH
Confidence 36789999999999999763
No 405
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.92 E-value=0.25 Score=65.79 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=32.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
...+++|.||||+|||+++..++......|.++++.+.-
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E 420 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 578999999999999999999999888777666666543
No 406
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.89 E-value=0.24 Score=52.49 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=30.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
-+.+..+-+|+||||+++.+...|...|.+||++=
T Consensus 4 vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35566778899999999999999999999999864
No 407
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=89.88 E-value=0.24 Score=52.93 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=30.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
-+.+..|-+|+||||+.+.+...|...|.+||++=
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46666788899999999999999999999999864
No 408
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.86 E-value=0.28 Score=55.06 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=35.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHH--hCCCcEEEEcCCH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILL--QMKFRTLVCTPTN 87 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll--~~~~rILv~A~TN 87 (1044)
..+.++.|-+|.||||+.+++...|. ..|+|||++..--
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 46889999999999999999999999 8999999987653
No 409
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.82 E-value=0.28 Score=53.15 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=28.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 52 QLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
..|.|-+|+||||+.+.+...|...|.+||++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 44579999999999999999999999999876
No 410
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.82 E-value=0.19 Score=56.45 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVILL 74 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~Ll 74 (1044)
...++.|.||||+||||++..++..+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999988777653
No 411
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.79 E-value=0.22 Score=50.67 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=29.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.+..+-+|+||||+.+.+...|...|.+||++-.
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34455778999999999999999999999998754
No 412
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.73 E-value=0.26 Score=51.50 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=30.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
-+.+..+-+|+||||+.+.+...|...|.+||++-
T Consensus 4 ~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35566678899999999999999999999999874
No 413
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.68 E-value=0.13 Score=51.23 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=18.8
Q ss_pred CCceEEEEccCCCcHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSM 68 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ 68 (1044)
...+..|.||+|+||||++..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 357899999999999999986
No 414
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.64 E-value=0.4 Score=61.95 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=53.3
Q ss_pred CccccCHHHhhhh---cCCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCC
Q 041971 870 LPFEVTDEQLEMI---LSPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETER 946 (1044)
Q Consensus 870 ~pf~lt~~e~~iI---~~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1044)
++|++|+-|.++| ....++++.+..|+|||++.+.-+... + .
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~--~----~----------------------------- 119 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL--A----R----------------------------- 119 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHH--H----T-----------------------------
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHH--H----h-----------------------------
Confidence 4789999999988 456799999999999999766544321 1 0
Q ss_pred CceeEEEEecCHHHHHHHHHHHHHH
Q 041971 947 PILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 947 ~~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
...+.++++....||.++.+.+.++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCeEEEEechHHHHHHHHHHHHHh
Confidence 1167999999999999998888875
No 415
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.59 E-value=0.14 Score=51.95 Aligned_cols=17 Identities=59% Similarity=0.845 Sum_probs=15.4
Q ss_pred CcEEEEecCCccHHHHH
Q 041971 886 RSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 886 ~~~~viGRSGTGKTT~~ 902 (1044)
++++|+|.||+||||.+
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 67999999999999964
No 416
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.58 E-value=0.42 Score=62.12 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=38.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHH
Q 041971 52 QLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKL 100 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~ 100 (1044)
..+.|.||+|||.+++.++.. .+.++|+++++...+.++.+-|..+
T Consensus 20 ~~l~G~~gs~ka~~~a~l~~~---~~~p~lvv~~~~~~A~~l~~el~~f 65 (1151)
T 2eyq_A 20 RLLGELTGAACATLVAEIAER---HAGPVVLIAPDMQNALRLHDEISQF 65 (1151)
T ss_dssp CCBCCCCTTHHHHHHHHHHHS---SSSEEEEEESSHHHHHHHHHHHGGG
T ss_pred EEEeCCchHHHHHHHHHHHHh---hCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 478999999999999876532 3668999999999999888888755
No 417
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.48 E-value=0.33 Score=50.16 Aligned_cols=39 Identities=28% Similarity=0.178 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHH
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
+-+..|..|+...-. ..+..|.||.|+||||++..+.-.
T Consensus 7 pk~~g~~~~l~~i~~-------Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 7 PKTLGQKHYVDAIDT-------NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCSHHHHHHHHHHHH-------CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCHhHHHHHHhccC-------CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446678888877633 479999999999999988766544
No 418
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.48 E-value=0.31 Score=50.21 Aligned_cols=32 Identities=31% Similarity=0.227 Sum_probs=28.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+.+..+-.|+||||+.+.+...|...| +||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 566778899999999999999999999 99886
No 419
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.45 E-value=0.59 Score=57.67 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=52.4
Q ss_pred cc-ccCHHHhhhhc----CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCC
Q 041971 871 PF-EVTDEQLEMIL----SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETE 945 (1044)
Q Consensus 871 pf-~lt~~e~~iI~----~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1044)
+| .+++-|.++|. ...+++|.|..|+|||+++.+-++.. +. .+
T Consensus 20 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~--~~---~~--------------------------- 67 (720)
T 2zj8_A 20 GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHR--IL---TQ--------------------------- 67 (720)
T ss_dssp TCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHH--HH---HH---------------------------
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHH--HH---hC---------------------------
Confidence 55 78888888774 47799999999999999988777542 11 00
Q ss_pred CCceeEEEEecCHHHHHHHHHHHHHHH
Q 041971 946 RPILRQLFVTVSPKLCFAIKQHISQMK 972 (1044)
Q Consensus 946 ~~~l~q~FvT~s~~L~~~v~~~~~~l~ 972 (1044)
..+.++++....||.++.+.+.++.
T Consensus 68 --~~~~l~i~P~raLa~q~~~~~~~l~ 92 (720)
T 2zj8_A 68 --GGKAVYIVPLKALAEEKFQEFQDWE 92 (720)
T ss_dssp --CSEEEEECSSGGGHHHHHHHTGGGG
T ss_pred --CCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 0578999999999999988886543
No 420
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.41 E-value=0.8 Score=55.77 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=27.7
Q ss_pred ccCHHHhhhhc----CCCcEEEEecCCccHHHHHHHHH
Q 041971 873 EVTDEQLEMIL----SPRSTFILGRSGTGKTTVLTRKL 906 (1044)
Q Consensus 873 ~lt~~e~~iI~----~~~~~~viGRSGTGKTT~~l~rl 906 (1044)
.|.+.|.+.|. .+.-++|-|..||||||+++-.+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHH
Confidence 58999998884 34568899999999999987654
No 421
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.34 E-value=0.14 Score=50.85 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.6
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+..++|.|-||+||||++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 446899999999999975
No 422
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.32 E-value=0.13 Score=51.78 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=16.1
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..+..+.|+|.||+||||.+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33457899999999999953
No 423
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.32 E-value=0.21 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=18.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
..+..|.||||+||||++..+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999998766544
No 424
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.31 E-value=0.14 Score=54.32 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.5
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..+.+++|.|.+||||||.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 45788999999999999965
No 425
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.26 E-value=0.48 Score=48.89 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=26.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
....+|.|+||+|||+++..++..+... .++.++
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i 71 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACI 71 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 4667888999999999999998887554 444433
No 426
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.21 E-value=0.26 Score=61.25 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+..++.||||||||+++.++...+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999998877766
No 427
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=89.20 E-value=0.72 Score=53.74 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=61.5
Q ss_pred cccHHHHHHHhhhccCCcCcCccccCHHHhhhh---cC--CCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 041971 850 RLSSVVVSHLLSDRVGRELDLPFEVTDEQLEMI---LS--PRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVN 924 (1044)
Q Consensus 850 ~~s~~~~~~~l~~~~~~~~~~pf~lt~~e~~iI---~~--~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~ 924 (1044)
.|+..++.++-.- .| -++|+-|.++| .. +.++++.|..|+|||.+.++-++.. + .
T Consensus 98 ~l~~~l~~~l~~~------g~-~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~--l---~-------- 157 (479)
T 3fmp_B 98 RLKPQLLQGVYAM------GF-NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ--V---E-------- 157 (479)
T ss_dssp TCCHHHHHHHHHT------TC-CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTT--C---C--------
T ss_pred CCCHHHHHHHHHc------CC-CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHH--H---h--------
Confidence 4577777776542 12 24677788877 22 4899999999999999987765431 0 0
Q ss_pred CccccccccchhhcccCCCCCCCceeEEEEecCHHHHHHHHHHHHHHHhhh
Q 041971 925 NSVTLHCSQESEAEEGLGETERPILRQLFVTVSPKLCFAIKQHISQMKSSA 975 (1044)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~l~q~FvT~s~~L~~~v~~~~~~l~~~~ 975 (1044)
......+.++++....||.++.+.+.++....
T Consensus 158 -------------------~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 158 -------------------PANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp -------------------TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred -------------------hcCCCCcEEEEeChHHHHHHHHHHHHHHHhhC
Confidence 01122578999999999999999988886543
No 428
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.14 E-value=0.48 Score=52.02 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=27.4
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHH--hCCCcEEEEc
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILL--QMKFRTLVCT 84 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll--~~~~rILv~A 84 (1044)
....+..|.||+|+||||++..+...+- -.+..|.++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~ 117 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEe
Confidence 3456899999999999999877665553 2345566644
No 429
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.10 E-value=0.23 Score=50.89 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=20.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
...+..|.||+|+||||++..+...+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999887665544
No 430
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.00 E-value=0.15 Score=54.18 Aligned_cols=18 Identities=33% Similarity=0.789 Sum_probs=15.4
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+..++|+|.+||||||.+
T Consensus 49 ~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 445999999999999964
No 431
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.99 E-value=0.29 Score=65.96 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
....+.+|.||||+|||+++..++..+...|.++++.+.
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 356899999999999999999999999887777666654
No 432
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.96 E-value=0.17 Score=50.02 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=15.4
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+..+.|+|.||+||||++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357899999999999954
No 433
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.95 E-value=0.23 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=18.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
.+.+|.||+|+||||++..++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999988776554
No 434
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.83 E-value=0.17 Score=55.96 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=17.6
Q ss_pred CCCcEEEEecCCccHHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVLT 903 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~l 903 (1044)
.|.+++|.|..|||||+++-
T Consensus 44 ~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 57799999999999998764
No 435
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.81 E-value=0.28 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
...+.+|.||+|+||||++..++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999998877654
No 436
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.81 E-value=0.26 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+..|.||||+||||+...+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 378899999999999887765544
No 437
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.74 E-value=0.17 Score=50.77 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=15.7
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+..++++|.||+||||++
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999965
No 438
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.73 E-value=0.33 Score=53.28 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEE
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTL 81 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rIL 81 (1044)
.+..+..|.||+|+||||++..++..+ ..+|+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~ 155 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL 155 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE
Confidence 345789999999999999988887766 45553
No 439
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=88.72 E-value=0.23 Score=56.18 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=32.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
.+.++.|..|+||||+.+++...+...|.+||++..
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 467899999999999999999999999999988876
No 440
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.69 E-value=0.34 Score=50.80 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=29.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhC-CCcEEEEc
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCT 84 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~-~~rILv~A 84 (1044)
+.+..+-+|+||||+.+.+...|... |.+||++-
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 45556678999999999999999998 99999884
No 441
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.67 E-value=0.22 Score=52.96 Aligned_cols=24 Identities=13% Similarity=0.258 Sum_probs=19.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
.-+..|.||||+||||+...+...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999987766554
No 442
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.67 E-value=0.17 Score=54.68 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=17.6
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..+.+++|.|.+||||||++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 45778999999999999976
No 443
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.57 E-value=0.25 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+..|.||+|+||||++..++..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3678999999999999998877654
No 444
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.57 E-value=0.64 Score=51.33 Aligned_cols=37 Identities=27% Similarity=0.190 Sum_probs=25.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHh--CCCcEEEEcC
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQ--MKFRTLVCTP 85 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~--~~~rILv~A~ 85 (1044)
+-+..|.||+|+||||++..+...+-. .+..+.+++.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEee
Confidence 348999999999999998766544432 2345665553
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.54 E-value=0.27 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
+-+..|.||||+||||++..+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887766554
No 446
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.53 E-value=0.17 Score=55.36 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=17.3
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..+..++|.|.+||||||.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCcCHHHHH
Confidence 45678999999999999964
No 447
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.51 E-value=0.44 Score=48.71 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=32.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc-CCHHHHHH
Q 041971 52 QLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT-PTNVAIKE 92 (1044)
Q Consensus 52 ~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A-~TN~AVd~ 92 (1044)
..|-|+.|+||||.+..+...|...|.+++++. |+...+-+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~ 44 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGE 44 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHH
Confidence 468899999999999999999999999887664 44444433
No 448
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.50 E-value=0.23 Score=50.56 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=17.8
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
+..|.||||+||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 478999999999998877655
No 449
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.48 E-value=0.26 Score=49.24 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILL 74 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll 74 (1044)
+++.+|.||-|+|||+++-++...|-
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 47999999999999999988776653
No 450
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.44 E-value=0.28 Score=50.41 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=24.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHHHh
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVILLQ 75 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~Ll~ 75 (1044)
+++.+|.||.|+|||+++-++...|..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 489999999999999999988877765
No 451
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.41 E-value=0.3 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
+.+..|.||||+||||++..+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999998776654
No 452
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.41 E-value=0.32 Score=49.42 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCC
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMK 77 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~ 77 (1044)
.+..|.||+|+||||++..++..+-..|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 4678999999999999988877765334
No 453
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.39 E-value=0.16 Score=63.00 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
.=.|+.||||||||.++.+++..+ +...+.+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v 542 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC---QANFISI 542 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT---TCEEEEC
T ss_pred ceEEEecCCCCCchHHHHHHHHHh---CCceEEe
Confidence 346899999999998777766543 4444433
No 454
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=88.38 E-value=0.47 Score=55.80 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=51.6
Q ss_pred ccccCHHHhhhhc---CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCC
Q 041971 871 PFEVTDEQLEMIL---SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERP 947 (1044)
Q Consensus 871 pf~lt~~e~~iI~---~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1044)
++++++.|.++|. ...+++|.|..|+|||.++++=++.. +. . .
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~--~~----~----------------------------~ 156 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYY--LE----N----------------------------Y 156 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHH--HH----H----------------------------C
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH--Hh----C----------------------------C
Confidence 7799999999883 35799999999999999996533221 11 0 0
Q ss_pred ceeEEEEecCHHHHHHHHHHHHHH
Q 041971 948 ILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 948 ~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
..+.++|+....|+.++.+.|.++
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcHHHHHHHHHHHHHh
Confidence 037899999999999998888765
No 455
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.37 E-value=0.19 Score=50.60 Aligned_cols=18 Identities=56% Similarity=0.805 Sum_probs=14.9
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+..+.|+|.||.||||++
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346789999999999953
No 456
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.36 E-value=0.61 Score=56.52 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=44.5
Q ss_pred ccCHHHhhhhc---CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCce
Q 041971 873 EVTDEQLEMIL---SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPIL 949 (1044)
Q Consensus 873 ~lt~~e~~iI~---~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 949 (1044)
.|+++|.+.|. ..+.++|.|..||||||++.-.+... ... ..-
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l------~~~----------------------------~~~ 225 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHL------ARQ----------------------------GNG 225 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHH------HTS----------------------------SSC
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHH------HHc----------------------------CCC
Confidence 57888888773 35678999999999999876544221 100 014
Q ss_pred eEEEEecCHHHHHHHHHHHHH
Q 041971 950 RQLFVTVSPKLCFAIKQHISQ 970 (1044)
Q Consensus 950 ~q~FvT~s~~L~~~v~~~~~~ 970 (1044)
+.+.++.|..-+.++.+.+.+
T Consensus 226 ~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 226 PVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CEEEEESSHHHHHHHHHHHHT
T ss_pred eEEEEeCcHHHHHHHHHHHHh
Confidence 677888888888888766543
No 457
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.03 E-value=0.19 Score=50.63 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=13.7
Q ss_pred cEEEEecCCccHHHHH
Q 041971 887 STFILGRSGTGKTTVL 902 (1044)
Q Consensus 887 ~~~viGRSGTGKTT~~ 902 (1044)
.+.|+|+||+||||.+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999953
No 458
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.01 E-value=0.19 Score=49.39 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=14.3
Q ss_pred cEEEEecCCccHHHHH
Q 041971 887 STFILGRSGTGKTTVL 902 (1044)
Q Consensus 887 ~~~viGRSGTGKTT~~ 902 (1044)
.++|+|-||+||||++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999965
No 459
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.01 E-value=0.19 Score=54.29 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=15.7
Q ss_pred CCCcEEEEecCCccHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~ 902 (1044)
.|..++|+|.+||||||.+
T Consensus 43 ~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp CCSEEEEESSTTSCHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3455999999999999953
No 460
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.99 E-value=0.23 Score=52.99 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=17.4
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..+.+++|.|.+||||||++
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35689999999999999965
No 461
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.94 E-value=0.21 Score=50.98 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
...++|+|.||+||||++
T Consensus 25 ~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 457999999999999964
No 462
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=87.87 E-value=0.55 Score=50.57 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=49.4
Q ss_pred cccCHHHhhhhc---CCCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCCc
Q 041971 872 FEVTDEQLEMIL---SPRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERPI 948 (1044)
Q Consensus 872 f~lt~~e~~iI~---~~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1044)
+++++-|.+.|. ..++.+|.+..|+|||.+++.=+.. .+ . . ..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~--~~---~-~----------------------------~~ 157 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARY--YL---E-N----------------------------YE 157 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHH--HH---H-H----------------------------CS
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHH--HH---H-c----------------------------CC
Confidence 789998988873 3468899999999999998653322 11 1 0 01
Q ss_pred eeEEEEecCHHHHHHHHHHHHHH
Q 041971 949 LRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 949 l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
.+.+||+....|+.++.+.+.++
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHh
Confidence 37899999999999998888775
No 463
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.70 E-value=0.24 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=16.8
Q ss_pred CCCcEEEEecCCccHHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVLT 903 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~l 903 (1044)
.+..++|.|-||+||||++-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 35689999999999999653
No 464
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.66 E-value=0.2 Score=53.97 Aligned_cols=18 Identities=33% Similarity=0.789 Sum_probs=15.4
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+..++|+|.+||||||.+
T Consensus 73 ~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcChHHHHH
Confidence 445999999999999954
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.60 E-value=0.27 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
.+.+|.||||+||||++..+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998877765
No 466
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.46 E-value=0.22 Score=52.06 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=15.4
Q ss_pred CceEEEEccCCCcHHHHHHHHH-HH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLL-VI 72 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll-~~ 72 (1044)
..+..|.||+|+||||++..+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4688999999999999988776 44
No 467
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.37 E-value=0.13 Score=54.96 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=17.1
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..+.++++.|.+||||||.+
T Consensus 42 ~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHH
T ss_pred CCCceEEEECCCCCcHHHHH
Confidence 34678999999999999975
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.37 E-value=0.29 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=19.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
....+|.||+|+|||+++..++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999988776554
No 469
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.35 E-value=0.32 Score=51.78 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=29.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEc
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 84 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A 84 (1044)
+.+..+-+|+||||+.+.+...|...|.+||++=
T Consensus 9 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 9 IALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4444578899999999999999999999999874
No 470
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.28 E-value=0.13 Score=62.04 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 041971 51 IQLIWGPPGTGKTKTVSMLLV 71 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~ 71 (1044)
..|+.||||||||+++.++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 689999999999997765543
No 471
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.22 E-value=0.26 Score=54.43 Aligned_cols=18 Identities=50% Similarity=0.746 Sum_probs=16.0
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+.+++|.|.+||||||.+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999965
No 472
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.20 E-value=0.27 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHH
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+.+|.||||+|||++...+...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999887776653
No 473
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.14 E-value=0.25 Score=53.72 Aligned_cols=19 Identities=32% Similarity=0.830 Sum_probs=17.2
Q ss_pred CCCcEEEEecCCccHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~ 902 (1044)
.+.++++.|.+||||||++
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 5789999999999999975
No 474
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=87.14 E-value=0.75 Score=54.22 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=50.4
Q ss_pred ccCHHHhhhh---cC--CCcEEEEecCCccHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchhhcccCCCCCCC
Q 041971 873 EVTDEQLEMI---LS--PRSTFILGRSGTGKTTVLTRKLFQKEELHRMAMEEFYGVNNSVTLHCSQESEAEEGLGETERP 947 (1044)
Q Consensus 873 ~lt~~e~~iI---~~--~~~~~viGRSGTGKTT~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1044)
.+++.|.++| .. +.+++|.+..|||||.+.++-++.. + . ....
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~--l---~---------------------------~~~~ 188 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSR--V---D---------------------------ASVP 188 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHH--S---C---------------------------TTCC
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHH--H---H---------------------------hCCC
Confidence 4777787776 23 4899999999999999987766542 0 0 0112
Q ss_pred ceeEEEEecCHHHHHHHHHHHHHH
Q 041971 948 ILRQLFVTVSPKLCFAIKQHISQM 971 (1044)
Q Consensus 948 ~l~q~FvT~s~~L~~~v~~~~~~l 971 (1044)
..+.+|++....|+.++.+.+.++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CceEEEEECcHHHHHHHHHHHHHh
Confidence 257999999999999998888776
No 475
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.13 E-value=0.2 Score=48.87 Aligned_cols=18 Identities=28% Similarity=0.652 Sum_probs=15.5
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
...++|+|.+||||||.+
T Consensus 36 g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CSEEEEESSSTTTTCHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999953
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.10 E-value=0.4 Score=50.26 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=20.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
...+..|.||||+||||+...+...|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44678899999999999887765544
No 477
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=86.92 E-value=0.86 Score=52.90 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.2
Q ss_pred CcCccccCHHHhhhhc---CCCcEEEEecCCccHHHHHHHHHHH
Q 041971 868 LDLPFEVTDEQLEMIL---SPRSTFILGRSGTGKTTVLTRKLFQ 908 (1044)
Q Consensus 868 ~~~pf~lt~~e~~iI~---~~~~~~viGRSGTGKTT~~l~rl~~ 908 (1044)
+.+++++++.|.++|. ..++++|.|.-|+|||.+++.=+..
T Consensus 88 ~~~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~ 131 (472)
T 2fwr_A 88 FDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE 131 (472)
T ss_dssp CCCCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHH
Confidence 3457899999999883 4567999999999999998765543
No 478
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.90 E-value=0.19 Score=62.82 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
.+...++.||||||||+++.++...+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHh
Confidence 34668999999999999888777654
No 479
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.88 E-value=0.39 Score=54.25 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=30.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCC
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 86 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~T 86 (1044)
+.+..|-+|+||||+++.+...|...|.+||++-..
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 445556899999999999999999999999988744
No 480
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.87 E-value=0.25 Score=51.26 Aligned_cols=19 Identities=16% Similarity=0.510 Sum_probs=16.7
Q ss_pred CCCcEEEEecCCccHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~ 902 (1044)
.+.+++|.|.+||||||.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999965
No 481
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.80 E-value=0.34 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 50 TIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 50 ~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
-+.+..|-+|+||||+.+.+...|. .|.+||++=.
T Consensus 29 vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~ 63 (267)
T 3k9g_A 29 IITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDM 63 (267)
T ss_dssp EEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEE
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEEC
Confidence 4555578889999999999999999 9999988753
No 482
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=86.78 E-value=0.34 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=21.3
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
...+..|.||.|+||||++..++..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999998876654
No 483
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=86.78 E-value=0.4 Score=50.61 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=20.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+..|.||.|+||||++..+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999987765554
No 484
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.77 E-value=0.25 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=19.1
Q ss_pred CCCcEEEEecCCccHHHHHHHHHHHHH
Q 041971 884 SPRSTFILGRSGTGKTTVLTRKLFQKE 910 (1044)
Q Consensus 884 ~~~~~~viGRSGTGKTT~~l~rl~~~~ 910 (1044)
.+..+++.|.+||||||.+ |+++.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa--~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLA--HIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHH--HHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH--HHHHHH
Confidence 3478999999999999964 555543
No 485
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.69 E-value=0.29 Score=49.88 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=19.9
Q ss_pred cCHHHhhhh--cCCCcEEEEecCCccHHHHH
Q 041971 874 VTDEQLEMI--LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 874 lt~~e~~iI--~~~~~~~viGRSGTGKTT~~ 902 (1044)
++..+..-. ..+.-+.|+|.||+||||++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 444444333 33457889999999999964
No 486
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=86.61 E-value=0.26 Score=50.22 Aligned_cols=18 Identities=44% Similarity=0.781 Sum_probs=15.2
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+..+.|+|.||+||||.+
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457889999999999954
No 487
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.59 E-value=0.28 Score=49.93 Aligned_cols=18 Identities=44% Similarity=0.757 Sum_probs=15.9
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
+.-++|+|.||+||||.+
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 557999999999999965
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.57 E-value=0.28 Score=54.23 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.8
Q ss_pred hcCCCcEEEEecCCccHHHHH
Q 041971 882 ILSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 882 I~~~~~~~viGRSGTGKTT~~ 902 (1044)
...+.+++|.|.+||||||++
T Consensus 48 ~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHH
Confidence 345678999999999999965
No 489
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=86.54 E-value=0.31 Score=54.87 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=30.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcC
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 85 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~ 85 (1044)
+.+..+-+|+||||+++.+...|...|.|||++=-
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~ 38 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDC 38 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 55666889999999999999999999999998853
No 490
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.48 E-value=0.28 Score=50.14 Aligned_cols=18 Identities=50% Similarity=0.892 Sum_probs=15.0
Q ss_pred CCcEEEEecCCccHHHHH
Q 041971 885 PRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 885 ~~~~~viGRSGTGKTT~~ 902 (1044)
...+.|+|.||.||||.+
T Consensus 4 g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp -CCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457899999999999964
No 491
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=86.44 E-value=1.9 Score=53.27 Aligned_cols=68 Identities=15% Similarity=-0.002 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHHHHH
Q 041971 26 STLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTNVAIKELAARVVKLVK 102 (1044)
Q Consensus 26 ~~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~A~TN~AVd~v~~rL~~~~~ 102 (1044)
+...+-|..++-..+.. . +...+-|||||-+.+.-+..-...|..++|+|||..-+..+.+-+..+..
T Consensus 82 ~~pt~VQ~~~ip~ll~G-------~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 82 MFPFKVQLMGGVALHDG-------N--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp CCCCHHHHHHHHHHHTT-------S--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhhHHHhCC-------C--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 47789999999877763 3 89999999999865533332234688999999999888877777766543
No 492
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.44 E-value=0.26 Score=50.75 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=14.4
Q ss_pred CcEEEEecCCccHHHHH
Q 041971 886 RSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 886 ~~~~viGRSGTGKTT~~ 902 (1044)
.-+.|+|.||+||||++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 45778999999999964
No 493
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.41 E-value=0.43 Score=52.02 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHHHH
Q 041971 47 HKATIQLIWGPPGTGKTKTVSMLLVILL 74 (1044)
Q Consensus 47 ~~~~i~LI~GPPGTGKT~ti~~ll~~Ll 74 (1044)
..+.+..|.||+|+||||++..+...+-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4467889999999999998877766664
No 494
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.38 E-value=0.26 Score=61.64 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=20.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHH
Q 041971 48 KATIQLIWGPPGTGKTKTVSMLLVI 72 (1044)
Q Consensus 48 ~~~i~LI~GPPGTGKT~ti~~ll~~ 72 (1044)
.+...+|.||||||||+++.++...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3556899999999999988777543
No 495
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.38 E-value=0.43 Score=51.98 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.3
Q ss_pred cCCCcEEEEecCCccHHHHH
Q 041971 883 LSPRSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 883 ~~~~~~~viGRSGTGKTT~~ 902 (1044)
..|..+++.|.+|||||+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45667888899999999954
No 496
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=86.33 E-value=0.64 Score=55.94 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHhccccCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 27 TLNDSQAQAVLSCLRQMRCDHKATIQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 27 ~Ln~sQ~~AV~~~l~~~~~~~~~~i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
..+..++++... + .+...+.+.+|.|+||+||||++..+...|...|..++.+
T Consensus 34 ~v~~~~r~~~~~---~-~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 34 HVSRNKRGQVVG---T-RGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CCCHHHHHHHSS---S-SSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHhC---C-CccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456666666421 0 0112456789999999999999999988887777766555
No 497
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.32 E-value=0.27 Score=49.32 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=14.6
Q ss_pred CcEEEEecCCccHHHHH
Q 041971 886 RSTFILGRSGTGKTTVL 902 (1044)
Q Consensus 886 ~~~~viGRSGTGKTT~~ 902 (1044)
.-+.|+|.||.||||.+
T Consensus 6 ~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46789999999999954
No 498
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.30 E-value=0.46 Score=51.46 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=29.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 041971 51 IQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 83 (1044)
Q Consensus 51 i~LI~GPPGTGKT~ti~~ll~~Ll~~~~rILv~ 83 (1044)
+.+..+-.|+||||+.+.+...|...|.+||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 455567889999999999999999999999876
No 499
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.30 E-value=0.4 Score=50.96 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+..|.||+|+||||++..+...|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4688999999999999887776543
No 500
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.22 E-value=0.38 Score=49.29 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHHH
Q 041971 49 ATIQLIWGPPGTGKTKTVSMLLVIL 73 (1044)
Q Consensus 49 ~~i~LI~GPPGTGKT~ti~~ll~~L 73 (1044)
..+..|.||.|+||||++..+...+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5799999999999999988776654
Done!