BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041973
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 18/265 (6%)
Query: 119 GGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVM---ISGLTSINSQLIHLAINSCK 175
G ++D QG+ +W + S G F +A ++ I GL +N+ + +INS
Sbjct: 77 GHSIDCQGSRWWDSKGSNG----GKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSAT 132
Query: 176 NVIVRNVKL--IAPDESP--NTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSS 231
+ V +V + A D + NTD + SSTGV I+G+ ++ DDC++I GT N+ +
Sbjct: 133 TLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTG 191
Query: 232 IKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQN 291
C GHG+SIGS+G G +++ V+ VT++NS+ SDNGVRIK+ + + S V V +
Sbjct: 192 GTCSGGHGLSIGSVG-GRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGS-VSGVTYSG 249
Query: 292 IIMKNV-QNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPC 350
I + N+ + I+I+Q+Y + +GV I+ +T I G+ A++ + C
Sbjct: 250 ITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGAC 309
Query: 351 RGIILQDIKLTYMNKAAATSSCKNI 375
+ +T K+ + C NI
Sbjct: 310 SNWKWSGVSVTGGKKS---TKCSNI 331
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 15/230 (6%)
Query: 152 SNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPN----TDGIHIQSSTGVKIT 207
+N +ISGL +NS + ++ + ++++ + D N TD I +ST V I+
Sbjct: 113 TNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTIS 172
Query: 208 GSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGS 267
G+ + DDC+++ G N+Y S C GHG+SIGS+G G +++ V+NVT +S S
Sbjct: 173 GATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVG-GRSDNTVKNVTFVDSTIINS 230
Query: 268 DNGVRIKSWARPSNSFVRNVLFQNIIMKNV-QNPILIDQNYCPHNQCPHQASGVKISQVT 326
DNGVRIK+ + S V +V +++I + ++ + I++ QNY + P +GV I+
Sbjct: 231 DNGVRIKTNIDTTGS-VSDVTYKDITLTSIAKYGIVVQQNYGDTSSTP--TTGVPITDFV 287
Query: 327 YRNIQGT-SATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNI 375
N+ G+ ++ + C G+ C D+ ++ +S C N+
Sbjct: 288 LDNVHGSVVSSGTNILISCGSGS-CSDWTWTDVSVS---GGKTSSKCTNV 333
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 45/296 (15%)
Query: 93 APTDYHVIGKTGN----WILFVQVDRVSVIG-GTLDAQGA--------GFWA------CR 133
AP+ V+ K G +I V + G GT+D QG +W +
Sbjct: 85 APSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVK 144
Query: 134 KSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNT 193
K QN P R I + + N + ++ INS H+ + + P + NT
Sbjct: 145 KLKQNTP---RLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNT 201
Query: 194 DGIHIQSSTGVKITGSIMQTGDDCISIG-----PGTRNLYMSSIKCGPGHGVSIGSLGWG 248
DGI SS + I S + TGDD ++I TRN+ + G GHG+SIGS
Sbjct: 202 DGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETM- 260
Query: 249 VNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYC 308
GV NVT+ + + G+ NG+RIKS + + V V + N++MKNV PI+ID Y
Sbjct: 261 ----GVYNVTVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY- 314
Query: 309 PHNQCPHQASGVKI---SQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLT 361
+ G + S +T++++ TS T V + + ++++KLT
Sbjct: 315 ------EKKEGSNVPDWSDITFKDV--TSETKGVVVLNGENAKKPIEVTMKNVKLT 362
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 192 NTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNE 251
NTDG I STGV I+G+ ++ DDCI+I G ++ + C GHG+SIGS+G G ++
Sbjct: 152 NTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVG-GRDD 209
Query: 252 DGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQN-PILIDQNYCPH 310
+ V+NVT+++S + S NGVRIK+ + + V + + NI + + + I+I+Q+Y
Sbjct: 210 NTVKNVTISDSTVSNSANGVRIKTIYKETGD-VSEITYSNIQLSGITDYGIVIEQDYENG 268
Query: 311 NQCPHQASGVKISQVTYRNIQGT 333
+ ++G+ I+ VT + GT
Sbjct: 269 SPTGTPSTGIPITDVTVDGVTGT 291
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 156/355 (43%), Gaps = 51/355 (14%)
Query: 46 LKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIV----APTDYHVIG 101
L ++C ++ + VPTG+ L + + +N + KGT A D++ I
Sbjct: 11 LATAVSSCKNIVLNGFQVPTGKQLDLSSL-----QNDSTVTFKGTTTFATTADNDFNPIV 65
Query: 102 KTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTS 161
+G+ I G +D G +W + GS S + + ++ T+
Sbjct: 66 ISGSNITITGAS-----GHVIDGNGQAYWDGK--------GSNSNSNQKPDHFIVVQKTT 112
Query: 162 INSQLIHLAIN---------------SCKNVIVRNVKLIAPDE-------SPNTDGIHIQ 199
NS++ +L I + +I+ N P+ + NTDG I
Sbjct: 113 GNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS 172
Query: 200 SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTL 259
SS V + + + DDC+++ GT N+ +S++ C GHG+SIGS+G G +++ V+ V
Sbjct: 173 SSDHVTLDNNHVYNQDDCVAVTSGT-NIVVSNMYCSGGHGLSIGSVG-GKSDNVVDGVQF 230
Query: 260 TNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQN-PILIDQNYCPHNQCPHQAS 318
+S+ S NG RIKS + + + + NV +QNI + N+ + + Q+Y +
Sbjct: 231 LSSQVVNSQNGCRIKSNSGATGT-INNVTYQNIALTNISTYGVDVQQDYLNGGPTGKPTN 289
Query: 319 GVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCK 373
GVKIS + + + GT A++ F C G +T K TSSC
Sbjct: 290 GVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGGK---TSSCN 341
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 158/344 (45%), Gaps = 43/344 (12%)
Query: 53 CSSVKASTIYVPTGRYLI-------KNIVFRGPCKNKIAIQIKGTIVAPTDYH--VIGKT 103
CS++ + I VP G L ++F G + + G +++ + H V G +
Sbjct: 45 CSTITLNNIEVPAGTTLDLTGLTSGTKVIFEGTTTFQYE-EWAGPLISMSGEHITVTGAS 103
Query: 104 GNWILFVQVDRVSVIGGTLDAQGAGFWACR-KSGQNCPVGSRSITFDWASNVMISGLTSI 162
G+ I + GA +W + SG+ P + D +S I+GL
Sbjct: 104 GHLI---------------NCDGARWWDGKGTSGKKKPKFFYAHGLDSSS---ITGLNIK 145
Query: 163 NSQLIHLAINSCKNVIVRNVKLIAPDESP----NTDGIHIQSSTGVKITGSIMQTGDDCI 218
N+ L+ ++ + ++ +V + D NTD + +S GV I + DDC+
Sbjct: 146 NTPLMAFSVQA-NDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCL 204
Query: 219 SIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWAR 278
++ G N++ + C GHG+SIGS+G N + V+NVT+ +S + S+N VRIK+ +
Sbjct: 205 AVNSG-ENIWFTGGTCIGGHGLSIGSVGDRSN-NVVKNVTIEHSTVSNSENAVRIKTISG 262
Query: 279 PSNSFVRNVLFQNIIMKNVQN-PILIDQNYCPHNQCPHQASGVKISQVTYRNIQGT-SAT 336
+ S V + + NI+M + + ++I Q+Y +GV I V ++ G+ +
Sbjct: 263 ATGS-VSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSG 321
Query: 337 AEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSS 380
A + C G+ C D+K+T K+ A CKN ++S
Sbjct: 322 ATEIYLLCGSGS-CSDWTWDDVKVTGGKKSTA---CKNFPSVAS 361
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 141/339 (41%), Gaps = 27/339 (7%)
Query: 27 NVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKN-IVFRGPCKNKIAI 85
N++ GA +D TD A AWAA C S +Y+P+G Y + + G + AI
Sbjct: 22 NILSYGAVADNSTDVGPAITSAWAA-CKS--GGLVYIPSGNYALNTWVTLTG--GSATAI 76
Query: 86 QIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGF-WACRKSGQNCPVGSR 144
Q+ G I Y +GN I + T GF + G G+R
Sbjct: 77 QLDGII-----YRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGT---YGAR 128
Query: 145 SITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGV 204
+ ++ + + +++ H +++C + V N+ + +E DGI + S +
Sbjct: 129 ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEG-GLDGIDVWGSN-I 186
Query: 205 KITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRF 264
+ + D+C+++ N+ + SI C G ++GSLG + V ++ N
Sbjct: 187 WVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLG---ADTDVTDIVYRNVYT 243
Query: 265 TGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQ 324
S+ IKS + V NVL +N I + ID + GV+++
Sbjct: 244 WSSNQMYMIKS--NGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQLNN 299
Query: 325 VTYRNIQGTS---ATAEAVTFDCSPGNPCRGIILQDIKL 360
+T +N +GT AT + CS PC + L+DI +
Sbjct: 300 ITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 147/375 (39%), Gaps = 92/375 (24%)
Query: 1 MAAKLLISCILSLFLTFFFKPS--NAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKA 58
M + L I L +P + N++D GA+ DG TD +++F +A S
Sbjct: 1 MIMEELAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRA-IEELSKQGG 59
Query: 59 STIYVPTGRYLIKNIVFRGP--CKNKIAIQIKGTI-----------VAPTDYHVIGKTGN 105
+ VP G +L GP K+ I + +KGTI V T + I
Sbjct: 60 GRLIVPEGVFLT------GPIHLKSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNY 113
Query: 106 WILFVQVD--RVSVIG-GTLD--AQGAGFWACR-------KSG----------------Q 137
L +D V++ G G LD A +W + K G +
Sbjct: 114 SPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAER 173
Query: 138 NCPVGSRS-----------ITFDWASNVMISGLTSINSQL--IHLAINSCKNVIVRNVKL 184
PV R + F NV++ G+ INS + IH ++ +NVI+RN+++
Sbjct: 174 GTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLS--ENVIIRNIEI 231
Query: 185 IAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPG-----------------TRNL 227
+ PN DGI +S + I TGDD + I G NL
Sbjct: 232 SST--GPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNL 289
Query: 228 YMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNV 287
+S G G+ IGS G GV NV N+ + + +R+K+ +R ++ N+
Sbjct: 290 VISQASHG---GLVIGSEMSG----GVRNVVARNNVYMNVERALRLKTNSR-RGGYMENI 341
Query: 288 LFQNIIMKNVQNPIL 302
F + + NV ++
Sbjct: 342 FFIDNVAVNVSEEVI 356
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 112/268 (41%), Gaps = 31/268 (11%)
Query: 51 AACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPT--DYHVIGKTGNWIL 108
A CS+V + VP G L+ N P K A T D + G I
Sbjct: 15 AGCSAVTLNGFTVPAGNTLVLN-----PDKGATVTMAGDITFAKTTLDGPLFTIDGTGIN 69
Query: 109 FVQVDRVSVIGGTLDAQGAGFWACR--KSGQNCP------VGSRSITFDWASNVMISGLT 160
FV D + D GA +W + +G + P GS + N +
Sbjct: 70 FVGADHI------FDGNGALYWDGKGTNNGTHKPHPFLKIKGSGTYKKFEVLNSPAQAI- 122
Query: 161 SINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISI 220
S+ HL ++ + V + + NTDG + S+ V I I++ DDCI+I
Sbjct: 123 SVGPTDAHLTLDG---ITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAI 178
Query: 221 GPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPS 280
G N+ + +C GHG+SIGS+ G + V NV + + T S GVRIK+ +
Sbjct: 179 NDG-NNIRFENNQCSGGHGISIGSIATGKH---VSNVVIKGNTVTRSMYGVRIKAQRTAT 234
Query: 281 NSFVRNVLFQ-NIIMKNVQNPILIDQNY 307
++ V V + N I + +LI Q+Y
Sbjct: 235 SASVSGVTYDANTISGIAKYGVLISQSY 262
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 146 ITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVK 205
+T NV ++G T + + H +N + +V N + ++ N DGI +S V
Sbjct: 334 MTLRGVENVYLAGFT-VRNPAFHGIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVM 392
Query: 206 ITGSIMQTGDDCISIGPGTRN------------LYMSSIKCGPGHGVSIGSLG-WGVNED 252
+ + TGDDCI+ GT L+ + + G G V+ G W
Sbjct: 393 VFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSHTGAW----- 447
Query: 253 GVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILI------DQN 306
+E++ N+ +D G+R KS + RNV F+N M+++ +++ D N
Sbjct: 448 -IEDILAENNVMYLTDIGLRAKSTSTIGGG-ARNVTFRNNAMRDLAKQVMVMTLDYADSN 505
Query: 307 Y---CPHNQCPHQASGVKISQVTYRNIQGTSATAE 338
P + P Q + VT N G + + E
Sbjct: 506 ANIDYPPAKIPAQFYDFTLKNVTVDNSTGKNPSIE 540
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 26 YNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLI 70
YNV D GA DG +D +A ++A A + T+Y+P G Y +
Sbjct: 3 YNVKDFGALGDGVSDD-RASIQAAIDAAYAAGGGTVYLPAGEYRV 46
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 32 GAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLI-------KNIVFRGPCKNKIA 84
GAK DG TD +AF KA + +YVP G +++ N V G K
Sbjct: 29 GAKGDGVTDDIRAFEKAIESGFP------VYVPYGTFMVSRGIKLPSNTVLTGAGKRNAV 82
Query: 85 IQIKGTI 91
I+ ++
Sbjct: 83 IRFMDSV 89
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 32 GAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLI-------KNIVFRGPCKNKIA 84
GAK DG TD +AF KA + +YVP G +++ N V G K
Sbjct: 29 GAKGDGVTDDIRAFEKAIESGFP------VYVPYGTFMVSRGIKLPSNTVLTGAGKRNAV 82
Query: 85 IQIKGTI 91
I+ ++
Sbjct: 83 IRFMDSV 89
>pdb|2YP7|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus
pdb|2YP8|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP9|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 21 PSNAAYNVIDLGAKSDGETDSTQAFLKAWAAA---CSSVKASTIYVPT--GRYLIKNIVF 75
P+N ++ + + TD+ Q FL A A+ S+ ++ +P R ++NI
Sbjct: 169 PNNEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRPRVRNIPS 228
Query: 76 RGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWI 107
R I I TIV P D +I TGN I
Sbjct: 229 R--------ISIYWTIVKPGDILLINSTGNLI 252
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 27 NVIDLGAKSDGETDSTQAFLKAWAAA--------CSSVKASTIYVPTGRYLIK 71
NV + GAK DG TD T A A A ++ + + +Y P G Y +
Sbjct: 51 NVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVS 103
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 32 GAKSDGETDSTQAFLKAWA--AACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQ--- 86
GAK DG TD TQA +A A C I+ G Y++ + + + P +I +
Sbjct: 407 GAKGDGHTDDTQAIKNVFAKYAGC-----KIIFFDAGTYIVTDTI-QIPAGTQIVGEVWS 460
Query: 87 -IKGTIVAPTDYH 98
I GT TDY+
Sbjct: 461 VIMGTGSKFTDYN 473
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 25 AYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIV 74
A +++D G DG TD+ QA A A S +++P + IV
Sbjct: 51 AISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIV 100
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan
Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan
Fragments
Length = 464
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 17 FFFKPSNAAYN---VIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNI 73
F+ P+ N V D GA + +D + A +A A T+ +P G Y I
Sbjct: 11 FYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGI 70
Query: 74 VFRGPCKNKIAIQIKG-TIVAPT 95
K+ + I+++ I+ PT
Sbjct: 71 ----QMKSNVHIRVESDVIIKPT 89
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From
A. Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From
A. Fortis In Absence Of Chloride Ions
Length = 473
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 17 FFFKPSNAAYN---VIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNI 73
F+ P+ N V D GA + +D + A +A A T+ +P G Y I
Sbjct: 12 FYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGI 71
Query: 74 VFRGPCKNKIAIQIKG-TIVAPT 95
K+ + I+++ I+ PT
Sbjct: 72 ----QMKSNVHIRVESDVIIKPT 90
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 25 AYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIV 74
A +++D G DG TD+ QA A A S +++P + IV
Sbjct: 51 AISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIV 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,617,960
Number of Sequences: 62578
Number of extensions: 471489
Number of successful extensions: 888
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 30
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)