Query 041973
Match_columns 392
No_of_seqs 186 out of 1671
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 1.5E-77 3.2E-82 578.5 46.8 384 4-390 9-393 (394)
2 PLN02793 Probable polygalactur 100.0 1.2E-74 2.6E-79 566.9 49.3 368 23-391 50-425 (443)
3 PLN02218 polygalacturonase ADP 100.0 8.3E-74 1.8E-78 558.4 46.1 365 18-389 60-431 (431)
4 PLN02188 polygalacturonase/gly 100.0 1.1E-73 2.4E-78 553.9 44.4 368 20-389 31-404 (404)
5 PLN03003 Probable polygalactur 100.0 4.1E-73 8.8E-78 551.3 42.0 381 1-391 1-391 (456)
6 PLN03010 polygalacturonase 100.0 7.7E-72 1.7E-76 539.6 46.9 355 22-390 43-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 3.6E-55 7.9E-60 418.8 34.6 323 53-380 1-325 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 3.6E-41 7.7E-46 332.0 27.1 271 20-301 77-402 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 5E-26 1.1E-30 217.8 24.2 246 24-297 36-338 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 1.2E-21 2.6E-26 178.1 20.3 212 26-271 2-224 (225)
11 PLN03003 Probable polygalactur 99.8 1.3E-18 2.9E-23 170.2 28.3 207 144-374 105-343 (456)
12 PLN02218 polygalacturonase ADP 99.8 7.4E-19 1.6E-23 172.4 26.2 207 144-374 148-394 (431)
13 PLN03010 polygalacturonase 99.8 4.3E-18 9.3E-23 165.6 30.2 207 144-374 131-360 (409)
14 PLN02793 Probable polygalactur 99.8 5E-18 1.1E-22 167.3 30.7 219 81-335 143-397 (443)
15 PLN02155 polygalacturonase 99.8 3.7E-18 8E-23 165.7 27.5 206 145-373 108-348 (394)
16 PLN02188 polygalacturonase/gly 99.8 1.3E-17 2.9E-22 162.4 31.1 221 81-335 122-377 (404)
17 PF00295 Glyco_hydro_28: Glyco 99.8 6E-17 1.3E-21 155.2 26.3 196 104-334 92-310 (326)
18 PF03718 Glyco_hydro_49: Glyco 99.8 2.9E-16 6.3E-21 152.2 27.9 274 57-362 231-553 (582)
19 TIGR03805 beta_helix_1 paralle 99.8 5.9E-16 1.3E-20 147.2 25.5 197 45-297 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 7.2E-12 1.6E-16 124.8 16.2 154 165-335 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.1 3.3E-08 7.1E-13 94.3 24.6 210 106-339 57-287 (314)
22 PF12541 DUF3737: Protein of u 98.9 3.4E-08 7.4E-13 88.5 12.5 126 147-301 93-229 (277)
23 PF12541 DUF3737: Protein of u 98.8 2.3E-08 4.9E-13 89.7 10.1 137 110-273 95-231 (277)
24 COG3420 NosD Nitrous oxidase a 98.8 1.9E-06 4E-11 79.9 22.6 185 56-273 32-221 (408)
25 PLN02497 probable pectinestera 98.8 2E-06 4.4E-11 81.5 21.9 78 3-89 4-90 (331)
26 TIGR03808 RR_plus_rpt_1 twin-a 98.8 7.2E-07 1.6E-11 86.7 18.8 147 144-304 107-291 (455)
27 PF13229 Beta_helix: Right han 98.7 2.5E-07 5.5E-12 78.6 11.9 140 145-304 2-145 (158)
28 PF03718 Glyco_hydro_49: Glyco 98.6 5.2E-06 1.1E-10 81.7 19.8 176 168-365 322-517 (582)
29 PF14592 Chondroitinas_B: Chon 98.6 4.1E-06 8.8E-11 81.4 18.2 33 41-76 3-35 (425)
30 PF13229 Beta_helix: Right han 98.6 8.8E-07 1.9E-11 75.2 12.1 139 107-274 3-145 (158)
31 PRK10123 wcaM putative colanic 98.5 1.7E-05 3.7E-10 72.1 19.5 74 5-93 11-90 (464)
32 COG3866 PelB Pectate lyase [Ca 98.5 3.4E-05 7.4E-10 70.7 19.5 74 194-267 145-229 (345)
33 PLN02773 pectinesterase 98.4 0.00012 2.7E-09 69.3 23.8 59 22-89 3-63 (317)
34 PLN02634 probable pectinestera 98.4 0.00013 2.9E-09 69.8 23.6 46 41-89 67-114 (359)
35 PF05048 NosD: Periplasmic cop 98.4 1.7E-05 3.6E-10 72.8 16.4 113 145-273 37-151 (236)
36 PLN02480 Probable pectinestera 98.4 0.00025 5.3E-09 68.0 24.6 198 40-297 58-277 (343)
37 PLN02176 putative pectinestera 98.4 0.00022 4.8E-09 68.1 23.8 46 41-89 50-97 (340)
38 PF05048 NosD: Periplasmic cop 98.4 1.5E-05 3.2E-10 73.1 15.0 135 144-302 14-150 (236)
39 PF07602 DUF1565: Protein of u 98.3 4E-05 8.6E-10 69.8 17.1 168 43-275 16-196 (246)
40 COG3866 PelB Pectate lyase [Ca 98.3 2.1E-05 4.5E-10 72.1 15.1 180 83-302 77-281 (345)
41 PLN02170 probable pectinestera 98.3 0.00041 8.9E-09 69.8 24.6 47 41-89 236-284 (529)
42 PLN02432 putative pectinestera 98.3 0.00056 1.2E-08 64.1 23.2 178 41-296 22-204 (293)
43 PLN02708 Probable pectinestera 98.3 0.00035 7.6E-09 71.3 23.5 46 41-89 252-300 (553)
44 PLN02682 pectinesterase family 98.3 0.00072 1.6E-08 65.2 24.4 192 41-296 81-279 (369)
45 smart00656 Amb_all Amb_all dom 98.2 7.5E-05 1.6E-09 66.0 16.3 99 168-267 33-144 (190)
46 PLN02665 pectinesterase family 98.2 0.00054 1.2E-08 66.1 23.2 46 41-89 79-126 (366)
47 PLN02304 probable pectinestera 98.2 0.00063 1.4E-08 65.7 22.8 46 41-89 86-133 (379)
48 PLN02933 Probable pectinestera 98.1 0.00077 1.7E-08 68.0 23.1 46 41-89 229-276 (530)
49 PRK10531 acyl-CoA thioesterase 98.1 0.0005 1.1E-08 67.2 20.1 52 35-89 88-141 (422)
50 PLN02671 pectinesterase 98.1 0.0016 3.5E-08 62.6 23.2 46 41-89 70-117 (359)
51 PLN02916 pectinesterase family 98.1 0.0014 3E-08 65.7 22.8 46 41-89 198-248 (502)
52 PLN02990 Probable pectinestera 98.0 0.0014 3E-08 67.2 22.6 46 41-89 270-317 (572)
53 PLN02301 pectinesterase/pectin 98.0 0.0014 2.9E-08 66.8 22.4 46 41-89 247-294 (548)
54 PLN02506 putative pectinestera 98.0 0.0011 2.5E-08 67.2 21.6 46 41-89 243-290 (537)
55 PLN02201 probable pectinestera 98.0 0.0023 5E-08 64.6 23.0 46 41-89 217-264 (520)
56 PF00544 Pec_lyase_C: Pectate 98.0 8.5E-05 1.8E-09 66.2 11.6 99 168-267 38-158 (200)
57 smart00656 Amb_all Amb_all dom 98.0 0.00032 6.9E-09 62.0 15.1 119 145-273 33-173 (190)
58 PLN02745 Putative pectinestera 98.0 0.002 4.3E-08 66.3 22.6 145 41-235 296-451 (596)
59 PF01095 Pectinesterase: Pecti 97.9 0.0015 3.2E-08 61.9 19.7 47 40-89 10-58 (298)
60 PLN02416 probable pectinestera 97.9 0.0023 5E-08 65.2 22.2 46 41-89 241-288 (541)
61 PLN02488 probable pectinestera 97.9 0.0042 9E-08 62.2 23.4 46 41-89 208-255 (509)
62 PLN02468 putative pectinestera 97.9 0.003 6.4E-08 64.8 22.4 45 42-89 270-316 (565)
63 PLN02484 probable pectinestera 97.9 0.0043 9.4E-08 63.8 23.4 47 41-89 283-331 (587)
64 PLN02313 Pectinesterase/pectin 97.9 0.0038 8.2E-08 64.3 22.9 46 41-89 286-333 (587)
65 PLN02217 probable pectinestera 97.9 0.0025 5.4E-08 66.1 21.5 177 41-267 261-452 (670)
66 PLN02713 Probable pectinestera 97.9 0.0041 8.9E-08 63.7 22.7 145 41-235 261-419 (566)
67 PLN03043 Probable pectinestera 97.9 0.0041 9E-08 63.4 22.4 146 41-235 234-392 (538)
68 PF12708 Pectate_lyase_3: Pect 97.8 0.0016 3.4E-08 58.7 17.6 123 154-301 94-224 (225)
69 PLN02995 Probable pectinestera 97.8 0.0022 4.8E-08 65.2 19.2 46 41-89 234-283 (539)
70 PLN02197 pectinesterase 97.7 0.0047 1E-07 63.4 19.9 46 41-89 286-333 (588)
71 PLN02314 pectinesterase 97.7 0.0049 1.1E-07 63.6 19.5 149 41-235 289-444 (586)
72 PF00544 Pec_lyase_C: Pectate 97.3 0.0044 9.4E-08 55.3 12.7 116 149-274 43-188 (200)
73 PF01696 Adeno_E1B_55K: Adenov 97.3 0.078 1.7E-06 51.3 21.2 139 45-236 57-199 (386)
74 COG3420 NosD Nitrous oxidase a 97.3 0.0057 1.2E-07 57.3 12.6 114 107-236 123-236 (408)
75 COG4677 PemB Pectin methyleste 97.2 0.056 1.2E-06 50.5 18.3 46 40-89 92-141 (405)
76 PF12218 End_N_terminal: N ter 97.1 0.00049 1.1E-08 47.5 3.0 37 33-73 1-38 (67)
77 PF01696 Adeno_E1B_55K: Adenov 95.7 2.2 4.7E-05 41.5 21.0 86 171-271 117-204 (386)
78 PF03211 Pectate_lyase: Pectat 95.1 2.4 5.3E-05 37.9 16.9 75 152-232 61-136 (215)
79 PF03211 Pectate_lyase: Pectat 94.9 1.4 2.9E-05 39.5 14.2 131 175-329 61-194 (215)
80 PLN02480 Probable pectinestera 94.5 1.9 4.2E-05 41.6 15.5 135 173-333 130-275 (343)
81 PLN02698 Probable pectinestera 94.2 1.1 2.3E-05 45.7 13.6 40 202-243 298-337 (497)
82 TIGR03804 para_beta_helix para 93.1 0.14 3E-06 33.4 3.5 37 196-233 2-38 (44)
83 PRK10531 acyl-CoA thioesterase 92.9 4.4 9.5E-05 40.1 14.9 114 173-297 204-336 (422)
84 PF09251 PhageP22-tail: Salmon 92.7 5.6 0.00012 38.9 14.8 37 255-294 311-347 (549)
85 PF07602 DUF1565: Protein of u 92.4 5.4 0.00012 36.6 14.0 105 168-305 90-196 (246)
86 PLN02197 pectinesterase 92.1 5.1 0.00011 41.6 14.9 15 150-164 362-376 (588)
87 TIGR03804 para_beta_helix para 90.5 0.49 1.1E-05 30.7 3.9 41 168-213 1-41 (44)
88 PF08480 Disaggr_assoc: Disagg 86.9 19 0.00041 31.3 12.0 63 202-269 2-78 (198)
89 PRK10123 wcaM putative colanic 86.0 4.9 0.00011 37.3 8.4 20 224-243 300-319 (464)
90 PLN02468 putative pectinestera 84.5 28 0.0006 36.2 14.2 77 150-235 343-424 (565)
91 PF09251 PhageP22-tail: Salmon 84.4 15 0.00032 36.1 11.2 45 225-276 311-355 (549)
92 PLN02708 Probable pectinestera 83.0 23 0.0005 36.6 12.9 53 201-265 357-409 (553)
93 PF14592 Chondroitinas_B: Chon 82.6 6.2 0.00013 39.1 8.2 39 202-242 199-241 (425)
94 PLN02217 probable pectinestera 82.0 19 0.00042 38.0 11.9 114 173-298 335-453 (670)
95 PF01095 Pectinesterase: Pecti 80.8 30 0.00065 32.8 12.0 16 150-165 85-100 (298)
96 PLN02773 pectinesterase 80.5 23 0.0005 33.9 11.0 171 171-364 98-269 (317)
97 PF10731 Anophelin: Thrombin i 78.3 1.4 3.1E-05 30.3 1.6 24 1-24 1-24 (65)
98 PLN02698 Probable pectinestera 77.4 46 0.001 34.0 12.7 139 149-298 267-420 (497)
99 PLN02301 pectinesterase/pectin 76.8 42 0.0009 34.7 12.3 40 149-188 320-364 (548)
100 PLN03043 Probable pectinestera 76.1 44 0.00096 34.5 12.3 116 171-298 309-429 (538)
101 PF08480 Disaggr_assoc: Disagg 75.7 54 0.0012 28.6 11.6 91 202-297 34-143 (198)
102 PLN02995 Probable pectinestera 75.2 44 0.00095 34.5 12.0 40 202-243 340-379 (539)
103 PLN02506 putative pectinestera 74.3 40 0.00088 34.7 11.4 18 148-165 315-332 (537)
104 PLN02916 pectinesterase family 74.1 89 0.0019 31.9 13.6 16 149-164 274-289 (502)
105 PLN02313 Pectinesterase/pectin 74.0 55 0.0012 34.2 12.5 16 150-165 360-375 (587)
106 PLN02201 probable pectinestera 73.3 71 0.0015 32.8 12.9 15 150-164 291-305 (520)
107 PLN02314 pectinesterase 73.0 60 0.0013 34.0 12.5 116 171-298 361-481 (586)
108 PLN02484 probable pectinestera 72.6 57 0.0012 34.1 12.2 41 148-188 356-401 (587)
109 PLN02933 Probable pectinestera 70.3 1.3E+02 0.0028 31.0 13.9 40 149-188 302-346 (530)
110 PLN02488 probable pectinestera 69.6 89 0.0019 31.9 12.4 53 202-266 312-364 (509)
111 PF08139 LPAM_1: Prokaryotic m 65.4 4.8 0.0001 22.8 1.5 17 1-17 6-22 (25)
112 PF05342 Peptidase_M26_N: M26 65.0 13 0.00027 34.1 4.9 40 25-75 126-166 (250)
113 PLN02990 Probable pectinestera 61.5 1.6E+02 0.0034 30.8 12.8 39 150-188 345-388 (572)
114 smart00722 CASH Domain present 58.0 96 0.0021 24.8 11.5 68 149-219 73-144 (146)
115 smart00710 PbH1 Parallel beta- 57.0 12 0.00027 20.1 2.4 20 255-274 2-22 (26)
116 PLN02671 pectinesterase 54.0 2.2E+02 0.0048 27.8 11.7 17 148-164 150-166 (359)
117 PLN02682 pectinesterase family 53.4 2.3E+02 0.005 27.8 12.5 107 174-297 195-305 (369)
118 PLN02634 probable pectinestera 51.9 2.4E+02 0.0052 27.5 12.3 16 150-165 147-162 (359)
119 PRK11627 hypothetical protein; 48.5 18 0.00039 31.9 3.1 19 1-19 1-19 (192)
120 PF05984 Cytomega_UL20A: Cytom 48.1 14 0.0003 27.5 1.9 17 1-17 1-17 (100)
121 PLN02170 probable pectinestera 47.4 3E+02 0.0064 28.5 11.8 80 147-235 308-392 (529)
122 PLN02432 putative pectinestera 45.0 2.8E+02 0.006 26.3 13.0 130 202-362 94-229 (293)
123 PLN02745 Putative pectinestera 45.0 2.3E+02 0.0049 29.8 10.8 115 172-298 369-488 (596)
124 PLN02665 pectinesterase family 44.3 3.2E+02 0.0069 26.8 12.5 170 171-364 150-327 (366)
125 PLN02416 probable pectinestera 40.7 2.5E+02 0.0055 29.1 10.3 16 150-165 315-330 (541)
126 PF07172 GRP: Glycine rich pro 38.6 18 0.00038 28.0 1.3 12 1-12 1-12 (95)
127 PLN02713 Probable pectinestera 37.3 5.1E+02 0.011 27.1 13.8 115 172-298 337-456 (566)
128 KOG1777 Putative Zn-finger pro 36.7 3.6E+02 0.0077 27.1 9.9 211 43-291 33-278 (625)
129 PLN02176 putative pectinestera 32.2 4.8E+02 0.01 25.3 13.5 131 150-297 120-271 (340)
130 PLN02497 probable pectinestera 32.0 4.7E+02 0.01 25.2 11.6 40 202-243 150-189 (331)
131 PRK15346 outer membrane secret 31.9 51 0.0011 33.8 3.7 23 1-23 1-23 (499)
132 PF10162 G8: G8 domain; Inter 31.8 2.1E+02 0.0045 23.1 6.7 54 57-123 11-65 (125)
133 COG4588 AcfC Accessory coloniz 31.4 1.1E+02 0.0025 27.2 5.2 55 1-66 1-55 (252)
134 PF13956 Ibs_toxin: Toxin Ibs, 29.0 37 0.00081 17.6 1.1 14 1-15 1-14 (19)
135 PHA00672 hypothetical protein 27.1 1.1E+02 0.0023 25.0 3.9 27 59-90 50-76 (152)
136 PF13605 DUF4141: Domain of un 26.9 35 0.00076 23.5 1.0 26 3-31 2-27 (55)
137 PRK15324 type III secretion sy 26.2 1.1E+02 0.0023 28.4 4.4 58 1-68 1-65 (252)
138 PF10614 CsgF: Type VIII secre 24.4 69 0.0015 26.7 2.6 23 1-23 1-23 (142)
139 PRK09936 hypothetical protein; 23.8 1.6E+02 0.0035 27.7 5.1 61 3-68 2-62 (296)
140 PRK09752 adhesin; Provisional 22.6 1.2E+03 0.026 26.8 13.5 151 130-298 57-235 (1250)
141 PF11131 PhrC_PhrF: Rap-phr ex 22.2 55 0.0012 20.3 1.2 15 1-15 1-15 (37)
142 PF05643 DUF799: Putative bact 22.2 1.2E+02 0.0025 27.3 3.7 18 1-19 1-18 (215)
143 PRK09810 entericidin A; Provis 21.1 86 0.0019 20.2 1.9 14 1-14 1-14 (41)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.5e-77 Score=578.47 Aligned_cols=384 Identities=61% Similarity=1.056 Sum_probs=346.7
Q ss_pred hhHHHHHHHHhhhccccCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEEEEEecCCCccE
Q 041973 4 KLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKI 83 (392)
Q Consensus 4 ~~l~~~~~~~~l~~~~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~v 83 (392)
.+|++|+.|.+. +...++++||++|||++||++|||+|||+|+++||++.+|++|+||+|+|++++|.|.|||||++
T Consensus 9 ~~~~~~~~~~~~---~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcksnv 85 (394)
T PLN02155 9 PLLFTLLTFIDV---SSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSKI 85 (394)
T ss_pred hHHHHHHHHhhc---cccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCCCc
Confidence 355555555553 33446799999999999999999999999998778988999999999999999999999999999
Q ss_pred EEEEceEEEecCccccccCcccEEEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEec
Q 041973 84 AIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSIN 163 (392)
Q Consensus 84 ~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n 163 (392)
+|+++|+|+.+.++..|.....|+.+.+.+|+.|.||+|||+|+.||.....+...+.+|+++.|.+|++++|++++++|
T Consensus 86 ~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~n 165 (394)
T PLN02155 86 TFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMN 165 (394)
T ss_pred eEEEeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEc
Confidence 99999999988888888655679999999999999999999999999876554555667889999999999999999999
Q ss_pred cccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEE
Q 041973 164 SQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIG 243 (392)
Q Consensus 164 ~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~ig 243 (392)
+|.|++++..|++|+|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++||
T Consensus 166 Sp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIG 245 (394)
T PLN02155 166 SQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIG 245 (394)
T ss_pred CCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEec
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCC-CCCCCCCcceE
Q 041973 244 SLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHN-QCPHQASGVKI 322 (392)
Q Consensus 244 s~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i 322 (392)
|+|.+...+.++||+++||+|.++.+|++||+|.+.++|.|+||+|+||+|++++.||.|.+.|.... .++...+...|
T Consensus 246 S~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i 325 (394)
T PLN02155 246 SLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKI 325 (394)
T ss_pred cccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEE
Confidence 99876556889999999999999999999999975567999999999999999999999999996533 34444556899
Q ss_pred EeEEEEeEEEeeCCCceEEEEcCCCCceecEEEEeEEEEecCCccCcceeecccccccceecCCCcCC
Q 041973 323 SQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLY 390 (392)
Q Consensus 323 ~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 390 (392)
+||+|+||+++.....++.+.|.++.+|+||+|+||+++.+++....+.|+|++|.+.++++|++|+.
T Consensus 326 ~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 326 SQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred EEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 99999999999876678899999999999999999999988665568999999999999999999985
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.2e-74 Score=566.89 Aligned_cols=368 Identities=42% Similarity=0.766 Sum_probs=334.7
Q ss_pred ceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCc-eEEEEEEEEecCCCccEEEEEceEEEecCcccccc
Q 041973 23 NAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTG-RYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIG 101 (392)
Q Consensus 23 ~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~~~~~~ 101 (392)
+++++|+||||+|||.+|||+|||+|+++||++.++++|+||+| +|+++++.|.||||++++|+++|+|+++.+..+|+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHcc
Confidence 46899999999999999999999999998899888999999999 59999999999999999999999999999998886
Q ss_pred C--cccEEEEEeeeEEEEEc-cEEeCCCCccccccC---CCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEecee
Q 041973 102 K--TGNWILFVQVDRVSVIG-GTLDAQGAGFWACRK---SGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCK 175 (392)
Q Consensus 102 ~--~~~li~~~~~~nv~I~G-g~idg~g~~~w~~~~---~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~ 175 (392)
. ...||.+.+.+|++|.| |+|||+|+.||+... ...+...||++|.|.+|+|++|++++++|+|.|++++..|+
T Consensus 130 ~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~ 209 (443)
T PLN02793 130 GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCR 209 (443)
T ss_pred CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccC
Confidence 4 35799999999999999 999999999996432 11223468999999999999999999999999999999999
Q ss_pred eEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEE
Q 041973 176 NVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVE 255 (392)
Q Consensus 176 ~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ 255 (392)
+|+|++++|.++..++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|.++....++
T Consensus 210 nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~ 289 (443)
T PLN02793 210 RVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVR 289 (443)
T ss_pred cEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEE
Confidence 99999999999988899999999999999999999999999999999999999999999999999999998876677899
Q ss_pred EEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCC-CCCCCCCcceEEeEEEEeEEEee
Q 041973 256 NVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHN-QCPHQASGVKISQVTYRNIQGTS 334 (392)
Q Consensus 256 ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~nI~~~ni~~~~ 334 (392)
||+|+||+|.++..|++||+|++ ++|.++||+|+||+|+++.+||.|.++|.... ++.+......|+||+|+||+++.
T Consensus 290 nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~ 368 (443)
T PLN02793 290 DITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS 368 (443)
T ss_pred EEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence 99999999999999999999975 67899999999999999999999999986532 45445567899999999999998
Q ss_pred CCCceEEEEcCCCCceecEEEEeEEEEecCCccCcceeecccccccceecCCCcCCC
Q 041973 335 ATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLYE 391 (392)
Q Consensus 335 ~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 391 (392)
....++.+.|+++.||+||+|+||+++..++....+.|+|++|.+.+.+.|++|+-+
T Consensus 369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~~ 425 (443)
T PLN02793 369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFSD 425 (443)
T ss_pred cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccccC
Confidence 655689999999999999999999999876545678999999999999999999854
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=8.3e-74 Score=558.35 Aligned_cols=365 Identities=42% Similarity=0.771 Sum_probs=331.4
Q ss_pred cccCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCc-eEEEEEEEEecCCCccEEEEEceEEEecCc
Q 041973 18 FFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTG-RYLIKNIVFRGPCKNKIAIQIKGTIVAPTD 96 (392)
Q Consensus 18 ~~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~ 96 (392)
...+.+++++|+||||+|||++|||+|||+|+++||++.++++|+||+| +|+++++.|.||||++++|+++|+|+++.+
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d 139 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK 139 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence 3445588999999999999999999999999987899888899999999 699999999999999999999999999999
Q ss_pred cccccCcccEEEEEeeeEEEEEc---cEEeCCCCccccccCC---CCCCCCCCeeEEEEecCcEEEEeeEEeccccceEE
Q 041973 97 YHVIGKTGNWILFVQVDRVSVIG---GTLDAQGAGFWACRKS---GQNCPVGSRSITFDWASNVMISGLTSINSQLIHLA 170 (392)
Q Consensus 97 ~~~~~~~~~li~~~~~~nv~I~G---g~idg~g~~~w~~~~~---~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~ 170 (392)
..+|+....||.+.+.+||+|.| |+|||+|+.||+.... ..+...||+++.|.+|+|++|++++++|+|.|+++
T Consensus 140 ~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~ 219 (431)
T PLN02218 140 RSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQIS 219 (431)
T ss_pred hhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEE
Confidence 98887667899999999999999 9999999999975322 12345689999999999999999999999999999
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCC
Q 041973 171 INSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVN 250 (392)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 250 (392)
+..|++|+|+|++|.++.+++|+|||++.+|+||+|+||+|.+|||||+++++++||+|+||+|..+||++|||++.+..
T Consensus 220 ~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~ 299 (431)
T PLN02218 220 IEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNS 299 (431)
T ss_pred EEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCC
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999987655
Q ss_pred CCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEeE
Q 041973 251 EDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNI 330 (392)
Q Consensus 251 ~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni 330 (392)
...++||+|+||+|.++..|++||+|++ ++|.++||+|+||+|+++.+||.|.+.|.....++.+++...|+||+|+||
T Consensus 300 ~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI 378 (431)
T PLN02218 300 KAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNI 378 (431)
T ss_pred CceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeE
Confidence 6789999999999999999999999975 779999999999999999999999999976444555566789999999999
Q ss_pred EEeeCCCceEEEEcCCCCceecEEEEeEEEEecCCccCcceeecccccccceecCCCcC
Q 041973 331 QGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCL 389 (392)
Q Consensus 331 ~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 389 (392)
+++.....++.+.|.++.||+||+|+||++.+. ...|.|+++.+.++++| .|.
T Consensus 379 ~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~-----~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 379 SGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG-----KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EEEecCCcEEEEEECCCCCEeeEEEEeEEEECC-----eeeEEEeeEEEcccCCC-CCC
Confidence 999865678899999999999999999999863 34799999999996665 784
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.1e-73 Score=553.93 Aligned_cols=368 Identities=42% Similarity=0.809 Sum_probs=329.0
Q ss_pred cCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEEEEEecCCCccEEEEEceEEEecCcccc
Q 041973 20 KPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHV 99 (392)
Q Consensus 20 ~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~~~~ 99 (392)
.+++.++||+||||+|||.+|||+|||+|+++||++.++++|+||+|+|+++++.|+|||++...|.+ +|+++++..+
T Consensus 31 ~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~ 108 (404)
T PLN02188 31 GSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF--TLKAATDLSR 108 (404)
T ss_pred cCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE--EEEcCCCHHH
Confidence 33467999999999999999999999999987889888899999999999999999888755434433 8899999999
Q ss_pred ccCcccEEEEEeeeEEEEEc-cEEeCCCCccccccCC--CCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceee
Q 041973 100 IGKTGNWILFVQVDRVSVIG-GTLDAQGAGFWACRKS--GQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKN 176 (392)
Q Consensus 100 ~~~~~~li~~~~~~nv~I~G-g~idg~g~~~w~~~~~--~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~ 176 (392)
|.....|+.+...+||+|.| |+|||+|+.||+.... ......||++|.|.+|++++|++++++|+|.|++++..|++
T Consensus 109 y~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~ 188 (404)
T PLN02188 109 YGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRN 188 (404)
T ss_pred CCCccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEcccc
Confidence 98767788888899999999 9999999999975421 13345789999999999999999999999999999999999
Q ss_pred EEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEE
Q 041973 177 VIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVEN 256 (392)
Q Consensus 177 v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~n 256 (392)
|+|++++|.++..++|+|||++.+|++|+|+||+|.++||||+++++++||+|+|+.|..+||++|||.|.++..+.++|
T Consensus 189 v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~n 268 (404)
T PLN02188 189 FKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTG 268 (404)
T ss_pred EEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEE
Confidence 99999999998888999999999999999999999999999999999999999999999999999999988777788999
Q ss_pred EEEEeeEEeCCcceEEEEeecCC-CCceEEeEEEEEEEEecCceeEEEEeecCCCCCC-CCCCCcceEEeEEEEeEEEee
Q 041973 257 VTLTNSRFTGSDNGVRIKSWARP-SNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQC-PHQASGVKISQVTYRNIQGTS 334 (392)
Q Consensus 257 i~i~n~~~~~~~~gi~i~~~~~~-~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~i~nI~~~ni~~~~ 334 (392)
|+|+||+|.++.+|++||+|.+. +.|.++||+|+||+|+++..||.|.+.|.....+ +..+....|+||+|+||+++.
T Consensus 269 V~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 269 LVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEe
Confidence 99999999999999999999642 4589999999999999999999999988753322 223456799999999999998
Q ss_pred CCCceEEEEcCCCCceecEEEEeEEEEecCC-ccCcceeecccccccceecCCCcC
Q 041973 335 ATAEAVTFDCSPGNPCRGIILQDIKLTYMNK-AAATSSCKNIGGMSSGVLMPESCL 389 (392)
Q Consensus 335 ~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 389 (392)
....++.+.|.++.||+||+|+||+++.+++ ....+.|+|+++.+.++++|++||
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 7667889999999999999999999998754 356799999999999999999998
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=4.1e-73 Score=551.26 Aligned_cols=381 Identities=37% Similarity=0.693 Sum_probs=334.7
Q ss_pred CchhhHHHHHHHHhhhccccCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCc-eEEEEEEEEecCC
Q 041973 1 MAAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTG-RYLIKNIVFRGPC 79 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~~~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~l~l~~~~ 79 (392)
|+++.+++-+-+.+| ....++..+||++|||+|||.+|||+|||+|+++||++.++++|+||+| +|++++|.|.|||
T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpc 78 (456)
T PLN03003 1 MKKKTWFLNFSLFFL--QIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSC 78 (456)
T ss_pred CCceeEEEeeeeeee--eeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCc
Confidence 666655543222222 2455678899999999999999999999999999898888999999999 5999999999888
Q ss_pred Ccc-EEEEEceEEEecCccccccC-cccEEEEEeeeEEEEEc-cEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEE
Q 041973 80 KNK-IAIQIKGTIVAPTDYHVIGK-TGNWILFVQVDRVSVIG-GTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMI 156 (392)
Q Consensus 80 ~s~-v~l~~~G~l~~~~~~~~~~~-~~~li~~~~~~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I 156 (392)
++. ++++++|+++++.. ..|.. ...||.+.+.++++|.| |+|||+|+.||+.. ..||+++.|.+|+|++|
T Consensus 79 k~~~~~~~i~G~i~ap~~-~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I 151 (456)
T PLN03003 79 KSTPVFVQMLGKLVAPSK-GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK------GSRPTALKFRSCNNLRL 151 (456)
T ss_pred cCcceeeccCceEecCcc-ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc------cCCceEEEEEecCCcEE
Confidence 774 88888998887543 34543 35799999999999999 99999999999742 35899999999999999
Q ss_pred EeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecC
Q 041973 157 SGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGP 236 (392)
Q Consensus 157 ~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~ 236 (392)
++++++|+|.|++++..|++++|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..
T Consensus 152 ~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~ 231 (456)
T PLN03003 152 SGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGP 231 (456)
T ss_pred eCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEEC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCC---CC
Q 041973 237 GHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHN---QC 313 (392)
Q Consensus 237 ~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~---~~ 313 (392)
+||++|||++.+.....++||+|+||+|.++.+|++||+|++ +.|.++||+|+||+|+++.+||.|+++|.+.. .+
T Consensus 232 GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~ 310 (456)
T PLN03003 232 GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAK 310 (456)
T ss_pred CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcc
Confidence 999999999876555679999999999999999999999975 67899999999999999999999999997432 12
Q ss_pred CCCCCcceEEeEEEEeEEEeeCCCceEEEEcCCCCceecEEEEeEEEEecC-C--ccCcceeecccccccceecCCCcCC
Q 041973 314 PHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMN-K--AAATSSCKNIGGMSSGVLMPESCLY 390 (392)
Q Consensus 314 ~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~--~~~~~~c~~~~~~~~~~~~~~~~~~ 390 (392)
...++...|+||+|+||+++.....++.+.|++..||+||+|+||+++... + ..+.+.|+|++|.+.++++|++|+.
T Consensus 311 ~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~ 390 (456)
T PLN03003 311 DRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390 (456)
T ss_pred cCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccc
Confidence 334557899999999999988767789999999999999999999999763 2 2468999999999999999989985
Q ss_pred C
Q 041973 391 E 391 (392)
Q Consensus 391 ~ 391 (392)
.
T Consensus 391 ~ 391 (456)
T PLN03003 391 L 391 (456)
T ss_pred c
Confidence 3
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=7.7e-72 Score=539.64 Aligned_cols=355 Identities=39% Similarity=0.771 Sum_probs=324.5
Q ss_pred CceeEEEecCCccCCCCcccHHHHHHHHHHhcccCC-CcEEEEcCc-eEEEEEEEEecCCC-ccEEEEEceEEEecCccc
Q 041973 22 SNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVK-ASTIYVPTG-RYLIKNIVFRGPCK-NKIAIQIKGTIVAPTDYH 98 (392)
Q Consensus 22 ~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~-g~~v~ip~G-~Y~~~~l~l~~~~~-s~v~l~~~G~l~~~~~~~ 98 (392)
.++++||++|||++||++|||+|||+|+++||...+ +++|+|||| +|++++|.|.+||+ ++++|+++|+|+++.++.
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 467899999999999999999999999998775432 379999999 79999999988775 589999999999999998
Q ss_pred cccC--cccEEEEEeeeEEEEEc-cEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEecee
Q 041973 99 VIGK--TGNWILFVQVDRVSVIG-GTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCK 175 (392)
Q Consensus 99 ~~~~--~~~li~~~~~~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~ 175 (392)
.|+. ...|+.+.+.+|++|.| |+|||+|+.||+ ++.|.+|+|++|++++++|+|.|++++..|+
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~ 189 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSPKNHISIKTCN 189 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCCceEEEEeccc
Confidence 8853 35689999999999999 999999999993 6899999999999999999999999999999
Q ss_pred eEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEE
Q 041973 176 NVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVE 255 (392)
Q Consensus 176 ~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ 255 (392)
+++|++++|.++..++|+|||++..|++|+|+||+|.++||||++++++.++.|+++.|..+||++|||++.......++
T Consensus 190 nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~ 269 (409)
T PLN03010 190 YVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVS 269 (409)
T ss_pred cEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeE
Confidence 99999999999887899999999999999999999999999999999999999999999999999999998765556799
Q ss_pred EEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCC-CCCCCCCcceEEeEEEEeEEEee
Q 041973 256 NVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHN-QCPHQASGVKISQVTYRNIQGTS 334 (392)
Q Consensus 256 ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~nI~~~ni~~~~ 334 (392)
||+|+||+|.++.+|++||+|++ +.|.++||+|+||+|+++++||.|.+.|.... .+..+++...|+||+|+||+++.
T Consensus 270 nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~ 348 (409)
T PLN03010 270 DVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTT 348 (409)
T ss_pred EEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEe
Confidence 99999999999999999999974 67999999999999999999999999997533 45555678899999999999998
Q ss_pred CCCceEEEEcCCCCceecEEEEeEEEEecCCccCcceeecccccccceecCCCcCC
Q 041973 335 ATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLY 390 (392)
Q Consensus 335 ~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 390 (392)
....++.+.|++..+|+||+|+||+++.+++..+.+.|.|+++.+.++++|++|+.
T Consensus 349 ~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 349 SNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred CCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCcccc
Confidence 76789999999999999999999999987665678999999999999999999983
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=3.6e-55 Score=418.77 Aligned_cols=323 Identities=38% Similarity=0.704 Sum_probs=275.4
Q ss_pred cccCCCcEEEEcCceEEEEEEEEecCCCccEEEEEceEEEecCccccccCcccEEEEEeeeEEEEEc-cEEeCCCCcccc
Q 041973 53 CSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIG-GTLDAQGAGFWA 131 (392)
Q Consensus 53 ~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I~G-g~idg~g~~~w~ 131 (392)
|++.++++|+||+|+|+++++.|++++++++++.++|++.+......+.. ..||.+.+++|+.|.| |+|||+|+.||+
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~ 79 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWWD 79 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTCS
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhhc
Confidence 56667789999999999999878532247899999998888755555543 7889999999999999 999999999997
Q ss_pred ccCC-CCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceE
Q 041973 132 CRKS-GQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSI 210 (392)
Q Consensus 132 ~~~~-~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~ 210 (392)
.... ......||+++.|.+|++++|++++++++|.|++++..|++++|++++|.++...+|+|||++.+|+||+|+||+
T Consensus 80 ~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~ 159 (326)
T PF00295_consen 80 GSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCF 159 (326)
T ss_dssp SCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEE
T ss_pred cccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEee
Confidence 5543 145567899999999999999999999999999999999999999999999877799999999999999999999
Q ss_pred EecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEE
Q 041973 211 MQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQ 290 (392)
Q Consensus 211 i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ 290 (392)
+.++||||+++++..||+|+||+|..+||++||+++.......++||+|+||+|.++.+|++||+++ .++|.|+||+|+
T Consensus 160 i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~-~~~G~v~nI~f~ 238 (326)
T PF00295_consen 160 IDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP-GGGGYVSNITFE 238 (326)
T ss_dssp EESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET-TTSEEEEEEEEE
T ss_pred cccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec-ccceEEeceEEE
Confidence 9999999999998889999999999999999999975433346999999999999999999999997 378999999999
Q ss_pred EEEEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeCCCceEEEEcCCCCceecEEEEeEEEEecCCccCcc
Q 041973 291 NIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATS 370 (392)
Q Consensus 291 ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~ 370 (392)
||+|+++.+|+.|.+.|....+++.++....|+||+|+||+++.....++.+.|.+..+|+||+|+||+++. + ..++
T Consensus 239 ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g-~~~~ 315 (326)
T PF00295_consen 239 NITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--G-KKPA 315 (326)
T ss_dssp EEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--S-BSES
T ss_pred EEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--C-CcCe
Confidence 999999999999999987643444445567999999999999987667899999999999999999999998 3 6789
Q ss_pred eeeccccccc
Q 041973 371 SCKNIGGMSS 380 (392)
Q Consensus 371 ~c~~~~~~~~ 380 (392)
.|++++...+
T Consensus 316 ~c~nv~~~~~ 325 (326)
T PF00295_consen 316 QCKNVPSGIS 325 (326)
T ss_dssp EEBSCCTT--
T ss_pred EEECCCCCCc
Confidence 9999986543
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.6e-41 Score=332.00 Aligned_cols=271 Identities=31% Similarity=0.519 Sum_probs=232.4
Q ss_pred cCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEEEEEecCCCccEEEEE-ce-EEEecCcc
Q 041973 20 KPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQI-KG-TIVAPTDY 97 (392)
Q Consensus 20 ~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~-~G-~l~~~~~~ 97 (392)
.+....++|.+|||++||.+|+++|||+||++ |++.+|++|+||+|+|+.++|.| ||+++|++ +| +|.++.++
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~-ca~a~Gg~V~lPaGtylsg~l~L----KS~~~L~l~egatl~~~~~p 151 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDA-CASAGGGTVLLPAGTYLSGPLFL----KSNVTLHLAEGATLLASSNP 151 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHh-hhhhcCceEEECCceeEeeeEEE----ecccEEEecCCceeeCCCCh
Confidence 34456899999999999999999999999986 67789999999999999999999 69999999 48 99999888
Q ss_pred ccccC--------cc-----------------------cEEEEEeeeEEE-EEc-cEEeCCCC----ccccccCC--CCC
Q 041973 98 HVIGK--------TG-----------------------NWILFVQVDRVS-VIG-GTLDAQGA----GFWACRKS--GQN 138 (392)
Q Consensus 98 ~~~~~--------~~-----------------------~li~~~~~~nv~-I~G-g~idg~g~----~~w~~~~~--~~~ 138 (392)
.+|.. .. .++.....+|.. |.| ++++|+++ .||..... .+.
T Consensus 152 ~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i 231 (542)
T COG5434 152 KDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRI 231 (542)
T ss_pred hhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhcc
Confidence 88773 11 122223345666 888 88888642 26654431 111
Q ss_pred CC--CCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCc
Q 041973 139 CP--VGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDD 216 (392)
Q Consensus 139 ~~--~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD 216 (392)
.. .||..+.+..|.|+++++++|.+++.|.+|+..|++++++|++|.+.... |+||+++.+|+||+|++|+|.++||
T Consensus 232 ~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD 310 (542)
T COG5434 232 GGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDD 310 (542)
T ss_pred cccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCc
Confidence 22 68999999999999999999999999999999999999999999988754 9999999999999999999999999
Q ss_pred eEEeCCC-----------ceeEEEEeeeecCCce-eEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceE
Q 041973 217 CISIGPG-----------TRNLYMSSIKCGPGHG-VSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFV 284 (392)
Q Consensus 217 ~i~~~~~-----------s~ni~i~n~~~~~~~g-i~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v 284 (392)
||+++++ +++++|+||+|..+|| +.+|+| ..++++||++|||.|.++..||+||+..+ ++|.+
T Consensus 311 ~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~v 385 (542)
T COG5434 311 CIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGGV 385 (542)
T ss_pred eEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-cceeE
Confidence 9999986 6999999999999997 889998 57899999999999999999999999864 67999
Q ss_pred EeEEEEEEEEecCceeE
Q 041973 285 RNVLFQNIIMKNVQNPI 301 (392)
Q Consensus 285 ~ni~~~ni~~~~~~~~i 301 (392)
+||+|+++++.++..+.
T Consensus 386 ~nI~~~~~~~~nv~t~~ 402 (542)
T COG5434 386 RNIVFEDNKMRNVKTKL 402 (542)
T ss_pred EEEEEecccccCcccce
Confidence 99999999999985433
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=5e-26 Score=217.78 Aligned_cols=246 Identities=17% Similarity=0.220 Sum_probs=196.9
Q ss_pred eeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEEEEEecCCCccEEEEEc-eEEEecCccccccC
Q 041973 24 AAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIK-GTIVAPTDYHVIGK 102 (392)
Q Consensus 24 ~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~-G~l~~~~~~~~~~~ 102 (392)
+.+++++|||+|||++|+|+|||+||++| ++ ++.+|.+|||+|+.+++.| +++++|.++ |.... .++.
T Consensus 36 r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a~-gG~tV~Lp~G~Y~~G~L~L----~spltL~G~~gAt~~-----vIdG 104 (455)
T TIGR03808 36 LGRDATQYGVRPNSPDDQTRALQRAIDEA-AR-AQTPLALPPGVYRTGPLRL----PSGAQLIGVRGATRL-----VFTG 104 (455)
T ss_pred cCCCHHHcCcCCCCcchHHHHHHHHHHHh-hc-CCCEEEECCCceecccEEE----CCCcEEEecCCcEEE-----EEcC
Confidence 46899999999999999999999999975 43 5678999999999999999 489999987 43211 1111
Q ss_pred cccEEEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEecee-------
Q 041973 103 TGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCK------- 175 (392)
Q Consensus 103 ~~~li~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~------- 175 (392)
...++....+++|+|+|.+|+++|..| ..++.+|.+..|++++|+++++.++..|++.+..|+
T Consensus 105 ~~~lIiai~A~nVTIsGLtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~ 174 (455)
T TIGR03808 105 GPSLLSSEGADGIGLSGLTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT 174 (455)
T ss_pred CceEEEEecCCCeEEEeeEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce
Confidence 245666666999999999999998643 356789999999999999999999988999999999
Q ss_pred ---------------eEEEEeEEEECCCC--------------------------------CCCCCceeeeceecEEEEc
Q 041973 176 ---------------NVIVRNVKLIAPDE--------------------------------SPNTDGIHIQSSTGVKITG 208 (392)
Q Consensus 176 ---------------~v~i~~~~i~~~~~--------------------------------~~n~DGi~~~~s~nV~I~n 208 (392)
++.|++.+|....+ ...++||+++++.+++|++
T Consensus 175 I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~g 254 (455)
T TIGR03808 175 ITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRG 254 (455)
T ss_pred EeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEEC
Confidence 88888888865433 3567899999999999999
Q ss_pred eEEecCC-ceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecC-CCCceEEe
Q 041973 209 SIMQTGD-DCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWAR-PSNSFVRN 286 (392)
Q Consensus 209 ~~i~~gd-D~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~-~~~g~v~n 286 (392)
+.|+..+ |+|...+ ++|++|++++|..-+-+++-.+ ...+.-.|+|+.+.+...|+++..+.. ++...++.
T Consensus 255 N~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~g 327 (455)
T TIGR03808 255 NRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQG 327 (455)
T ss_pred CEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEEeecCCceEEEEec
Confidence 9999998 9999988 7899999999875332333322 122326789999999999999998752 23467888
Q ss_pred EEEEEEEEecC
Q 041973 287 VLFQNIIMKNV 297 (392)
Q Consensus 287 i~~~ni~~~~~ 297 (392)
-.++|++-+..
T Consensus 328 n~irn~~~~~p 338 (455)
T TIGR03808 328 NIIRNLIPKRP 338 (455)
T ss_pred ceeeccccCCC
Confidence 88999988764
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.89 E-value=1.2e-21 Score=178.13 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=112.1
Q ss_pred EEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEE-EEEecCCCccEEEEEce----EEEecCccccc
Q 041973 26 YNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKN-IVFRGPCKNKIAIQIKG----TIVAPTDYHVI 100 (392)
Q Consensus 26 ~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~-l~l~~~~~s~v~l~~~G----~l~~~~~~~~~ 100 (392)
+||++|||+|||++|||+|||+||+++ ++.++++||||||+|+++. |.+ +++++|+++| .+........+
T Consensus 2 inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~----~s~v~l~G~g~~~~~~~~~~~~~~~ 76 (225)
T PF12708_consen 2 INVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLII----PSNVTLRGAGGNSTILFLSGSGDSF 76 (225)
T ss_dssp EEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-----TTEEEEESSTTTEEEEECTTTSTS
T ss_pred cceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEc----CCCeEEEccCCCeeEEEecCccccc
Confidence 799999999999999999999999654 6678999999999999988 888 4999999985 33333222222
Q ss_pred cCcccEEEEEe-eeE--EEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeE
Q 041973 101 GKTGNWILFVQ-VDR--VSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNV 177 (392)
Q Consensus 101 ~~~~~li~~~~-~~n--v~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v 177 (392)
........+.. ..+ +.|++.++++..... ......+.+..+.+++|+++++.+....++.+..+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~----------~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~ 146 (225)
T PF12708_consen 77 SVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDP----------NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDY 146 (225)
T ss_dssp CCEEEEEECCSCSCCEEEEEEEEEEEETCGCE-----------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEEC
T ss_pred ccccceeeeecCCCCceEEEEeeEEEcccccC----------CCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccC
Confidence 11011111111 111 235555555543211 01124566666777777777777766666665544333
Q ss_pred EEEeEEEECCCCCCCCCceeeec-eecEEEEceEEecCCceEEeCCCceeEEEEeeeecC--CceeEEEecCCCCCCCcE
Q 041973 178 IVRNVKLIAPDESPNTDGIHIQS-STGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGP--GHGVSIGSLGWGVNEDGV 254 (392)
Q Consensus 178 ~i~~~~i~~~~~~~n~DGi~~~~-s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~--~~gi~igs~g~~~~~~~~ 254 (392)
.+.+..... ++.+.+ +.++.+.++.+..+++++... ..+++++||.+.. ..|+.+...
T Consensus 147 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~i~n~~~~~~~~~gi~i~~~--------- 207 (225)
T PF12708_consen 147 RIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG--NNNITISNNTFEGNCGNGINIEGG--------- 207 (225)
T ss_dssp EEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE--EEEEEEECEEEESSSSESEEEEEC---------
T ss_pred cEeecccce--------eeeeccceeEEEECCccccCCCceeEee--cceEEEEeEEECCccceeEEEECC---------
Confidence 333222210 122222 234455555555555552111 2455555555543 234444322
Q ss_pred EEEEEEeeEEeCCcceE
Q 041973 255 ENVTLTNSRFTGSDNGV 271 (392)
Q Consensus 255 ~ni~i~n~~~~~~~~gi 271 (392)
.+++|+|++|.++..|+
T Consensus 208 ~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 SNIIISNNTIENCDDGI 224 (225)
T ss_dssp SEEEEEEEEEESSSEEE
T ss_pred eEEEEEeEEEECCccCc
Confidence 22555555555554443
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.84 E-value=1.3e-18 Score=170.15 Aligned_cols=207 Identities=19% Similarity=0.270 Sum_probs=163.9
Q ss_pred eeEEEEecCcEEEEeeEEeccc---c--------ceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEe
Q 041973 144 RSITFDWASNVMISGLTSINSQ---L--------IHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQ 212 (392)
Q Consensus 144 ~~i~~~~~~nv~I~~v~i~n~~---~--------~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 212 (392)
..|.|.++++++|.|--..+.. . ..+.+..|++++|+++++.+++.. -+++..|++|+|++..|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEEe
Confidence 4699999999999985444321 2 258899999999999999765431 388889999999999998
Q ss_pred c-----CCceEEeCCCceeEEEEeeeecCCc-eeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCC-CCceEE
Q 041973 213 T-----GDDCISIGPGTRNLYMSSIKCGPGH-GVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARP-SNSFVR 285 (392)
Q Consensus 213 ~-----gdD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~v~ 285 (392)
+ ..|+|.+.+ ++||+|+||.+.+++ .+++++ +.+||+|+||++... +||+|.+.... ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGPG-HGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEECC-CCeEEeeccCCCCcceEE
Confidence 6 368999988 899999999999876 599975 348999999999875 89999987321 236799
Q ss_pred eEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeCCCceEEEEcC--------------CCCcee
Q 041973 286 NVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCS--------------PGNPCR 351 (392)
Q Consensus 286 ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~--------------~~~~i~ 351 (392)
||+++|+++.+..++++|+++.+ +.+.++||+|+||++.+.. .|+.+... ....++
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G---------g~G~v~nItf~nI~m~nV~-~pI~Idq~Y~~~~~~~~~~~~~s~v~Is 320 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG---------GSGYARMITFNGITLDNVE-NPIIIDQFYNGGDSDNAKDRKSSAVEVS 320 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC---------CCeEEEEEEEEeEEecCcc-ceEEEEcccCCCCCCCcccCCCCCcEEE
Confidence 99999999999999999998642 2358999999999999874 57766321 124689
Q ss_pred cEEEEeEEEEecCCccCcceeec
Q 041973 352 GIILQDIKLTYMNKAAATSSCKN 374 (392)
Q Consensus 352 ~i~~~ni~i~~~~~~~~~~~c~~ 374 (392)
||+|+||+-+.....+..+.|+.
T Consensus 321 nI~f~NI~GTs~~~~ai~l~Cs~ 343 (456)
T PLN03003 321 KVVFSNFIGTSKSEYGVDFRCSE 343 (456)
T ss_pred eEEEEeEEEEeCccceEEEEeCC
Confidence 99999999876554344566654
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.84 E-value=7.4e-19 Score=172.39 Aligned_cols=207 Identities=22% Similarity=0.344 Sum_probs=162.3
Q ss_pred eeEEEEecCcEEEEee---EEecc-------------------ccceEEEeceeeEEEEeEEEECCCCCCCCCceeeece
Q 041973 144 RSITFDWASNVMISGL---TSINS-------------------QLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSS 201 (392)
Q Consensus 144 ~~i~~~~~~nv~I~~v---~i~n~-------------------~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s 201 (392)
..|.+.+.+|++|.+- +|... ....+.+..|++++|+++++.+++.. -+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w----~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQI----QISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCE----EEEEEce
Confidence 3588889999999882 22211 11247888999999999999765531 3888999
Q ss_pred ecEEEEceEEec-----CCceEEeCCCceeEEEEeeeecCCce-eEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEe
Q 041973 202 TGVKITGSIMQT-----GDDCISIGPGTRNLYMSSIKCGPGHG-VSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKS 275 (392)
Q Consensus 202 ~nV~I~n~~i~~-----gdD~i~~~~~s~ni~i~n~~~~~~~g-i~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~ 275 (392)
+||+|++.+|.+ ..|+|.+.+ ++||+|+||++..+++ |+|++ +.+||+|+||++.. .+|++|.+
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~-GHGisIGS 293 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGP-GHGISIGS 293 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecC--------CCceEEEEeEEEEC-CCCEEECc
Confidence 999999999986 468999988 8999999999998764 99975 35899999999976 58999988
Q ss_pred ecC-CCCceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeCCCceEEEEcC---------
Q 041973 276 WAR-PSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCS--------- 345 (392)
Q Consensus 276 ~~~-~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~--------- 345 (392)
... ...+.|+||+++|+++.+..++++|+++.. +++.++||+|+||++.+.. .|+.+...
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G---------g~G~v~nI~f~ni~m~~V~-~pI~Idq~Y~~~~~~~~ 363 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG---------GSGTASNIIFQNIQMENVK-NPIIIDQDYCDKSKCTS 363 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCC---------CCeEEEEEEEEeEEEEccc-ccEEEEeeccCCCCCCC
Confidence 632 124689999999999999999999998532 2469999999999999874 56666421
Q ss_pred --CCCceecEEEEeEEEEecCCccCcceeec
Q 041973 346 --PGNPCRGIILQDIKLTYMNKAAATSSCKN 374 (392)
Q Consensus 346 --~~~~i~~i~~~ni~i~~~~~~~~~~~c~~ 374 (392)
....++||+|+||+.+.+.+.+..+.|+.
T Consensus 364 ~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~ 394 (431)
T PLN02218 364 QQSAVQVKNVVYRNISGTSASDVAITFNCSK 394 (431)
T ss_pred CCCCeEEEEEEEEeEEEEecCCcEEEEEECC
Confidence 12349999999999987654344555654
No 13
>PLN03010 polygalacturonase
Probab=99.84 E-value=4.3e-18 Score=165.55 Aligned_cols=207 Identities=19% Similarity=0.252 Sum_probs=162.8
Q ss_pred eeEEEEecCcEEEEeeEEecc---ccc-eEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEec-----C
Q 041973 144 RSITFDWASNVMISGLTSINS---QLI-HLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQT-----G 214 (392)
Q Consensus 144 ~~i~~~~~~nv~I~~v~i~n~---~~~-~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-----g 214 (392)
..+.|.+++|+.|.|--..+. ..| .+.+..|++++|+++++.+++.. -+++.+|++|+|++..|.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCC
Confidence 358899999999999666553 234 58899999999999999776531 3888899999999999986 3
Q ss_pred CceEEeCCCceeEEEEeeeecCCc-eeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCC-CCceEEeEEEEEE
Q 041973 215 DDCISIGPGTRNLYMSSIKCGPGH-GVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARP-SNSFVRNVLFQNI 292 (392)
Q Consensus 215 dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~v~ni~~~ni 292 (392)
.|+|.+.+ ++||+|+||++.+++ .+++++. ..++.|+++.+.. .+||+|.+.... ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEee
Confidence 68999987 899999999999876 5999763 2467788777765 489999986321 2256999999999
Q ss_pred EEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeCCCceEEEEc-C-----------CCCceecEEEEeEEE
Q 041973 293 IMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDC-S-----------PGNPCRGIILQDIKL 360 (392)
Q Consensus 293 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~-~-----------~~~~i~~i~~~ni~i 360 (392)
++.+..++++|+++.. +.+.++||+|+||++.+.. .|+.+.. + ....++||+|+||+-
T Consensus 277 ~i~~t~~GirIKt~~G---------~~G~v~nItf~nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~G 346 (409)
T PLN03010 277 TFNQTTNGARIKTWQG---------GQGYARNISFENITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRG 346 (409)
T ss_pred EEeCCCcceEEEEecC---------CCEEEEEeEEEeEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEE
Confidence 9999999999998643 2458999999999999874 5676642 1 123689999999999
Q ss_pred EecCCccCcceeec
Q 041973 361 TYMNKAAATSSCKN 374 (392)
Q Consensus 361 ~~~~~~~~~~~c~~ 374 (392)
+...+.+..+.|+.
T Consensus 347 T~~~~~~i~l~Cs~ 360 (409)
T PLN03010 347 TTSNENAITLKCSA 360 (409)
T ss_pred EeCCCccEEEEeCC
Confidence 87665455666643
No 14
>PLN02793 Probable polygalacturonase
Probab=99.84 E-value=5e-18 Score=167.31 Aligned_cols=219 Identities=20% Similarity=0.230 Sum_probs=169.3
Q ss_pred ccEEEEEceEEEecCcccccc------------CcccEEEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEE
Q 041973 81 NKIAIQIKGTIVAPTDYHVIG------------KTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITF 148 (392)
Q Consensus 81 s~v~l~~~G~l~~~~~~~~~~------------~~~~li~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~ 148 (392)
+|+++.+.|+|..... .-|. .+..+|.+.+++|++|+|-++.... .+.+++
T Consensus 143 ~ni~ItG~G~IDG~G~-~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp----------------~~~i~~ 205 (443)
T PLN02793 143 NHLTVEGGGTVNGMGH-EWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ----------------QMHIAF 205 (443)
T ss_pred ceEEEEeceEEECCCc-ccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC----------------CeEEEE
Confidence 6888888888864321 1111 1245788999999999995543221 146889
Q ss_pred EecCcEEEEeeEEecc----ccceEEEeceeeEEEEeEEEECCCCCCCCCceeee-ceecEEEEceEEecCCceEEeCC-
Q 041973 149 DWASNVMISGLTSINS----QLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGP- 222 (392)
Q Consensus 149 ~~~~nv~I~~v~i~n~----~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~- 222 (392)
.+|++++|+++++.++ ..++|++..|+||+|+|++|.+.+ |+|.+. +++||+|+||....+. +|+++|
T Consensus 206 ~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~Gh-GisIGSl 279 (443)
T PLN02793 206 TNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGH-GISIGSL 279 (443)
T ss_pred EccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCc-cEEEecc
Confidence 9999999999999873 457999999999999999999876 789996 6899999999998776 588887
Q ss_pred -------CceeEEEEeeeecCC-ceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCC---------CCceEE
Q 041973 223 -------GTRNLYMSSIKCGPG-HGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARP---------SNSFVR 285 (392)
Q Consensus 223 -------~s~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~v~ 285 (392)
+.+||+|+||++.+. .|++|++... ..+.++||+|+|++|.+...+|.|...+.. ....++
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~ 357 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVE 357 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEE
Confidence 269999999999865 6999998631 245799999999999999999999765311 124689
Q ss_pred eEEEEEEEEecCc-eeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeC
Q 041973 286 NVLFQNIIMKNVQ-NPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSA 335 (392)
Q Consensus 286 ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~ 335 (392)
||+|+|++..... .++.+.- ....+++||+|+||+++..
T Consensus 358 nI~~~nI~Gt~~~~~ai~l~c-----------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 358 NISFVHIKGTSATEEAIKFAC-----------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred eEEEEEEEEEEcccccEEEEe-----------CCCCCEeeEEEEeeEEEec
Confidence 9999999987643 3555542 1245899999999998854
No 15
>PLN02155 polygalacturonase
Probab=99.83 E-value=3.7e-18 Score=165.66 Aligned_cols=206 Identities=20% Similarity=0.256 Sum_probs=159.9
Q ss_pred eEEEEecCcEEEEeeEEecc--cc--------------ceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEc
Q 041973 145 SITFDWASNVMISGLTSINS--QL--------------IHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITG 208 (392)
Q Consensus 145 ~i~~~~~~nv~I~~v~i~n~--~~--------------~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n 208 (392)
.+.+.+.+++.|.+=+|... .. ..+.+..|++++|+++++.+++.. -+++.+|++|+|++
T Consensus 108 wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w----~i~~~~~~nv~i~~ 183 (394)
T PLN02155 108 WILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVS----HMTLNGCTNVVVRN 183 (394)
T ss_pred eEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCe----EEEEECeeeEEEEE
Confidence 57888889998888333211 11 237889999999999999765421 38888999999999
Q ss_pred eEEecC-----CceEEeCCCceeEEEEeeeecCCc-eeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCC-CC
Q 041973 209 SIMQTG-----DDCISIGPGTRNLYMSSIKCGPGH-GVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARP-SN 281 (392)
Q Consensus 209 ~~i~~g-----dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~-~~ 281 (392)
..|.+. .|+|.+.+ ++||+|+||++..++ .+++++ +.+||+|+|+++.. .+|++|.+.... ..
T Consensus 184 v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~--------gs~nI~I~n~~c~~-GhGisIGS~g~~~~~ 253 (394)
T PLN02155 184 VKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGP--------GTRNFLITKLACGP-GHGVSIGSLAKELNE 253 (394)
T ss_pred EEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCC--------CCceEEEEEEEEEC-CceEEeccccccCCC
Confidence 999862 48898887 899999999999876 599865 35899999999997 489999986322 35
Q ss_pred ceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeCCCceEEEEc-C-----------CCCc
Q 041973 282 SFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDC-S-----------PGNP 349 (392)
Q Consensus 282 g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~-~-----------~~~~ 349 (392)
+.|+||+++|+++.+..++++|+++..+ +++.++||+|+||++.+.. .|+.+.. + +...
T Consensus 254 ~~V~nV~v~n~~~~~t~~GirIKT~~~~--------~gG~v~nI~f~ni~m~~v~-~pI~i~q~Y~~~~~~~~~~~s~v~ 324 (394)
T PLN02155 254 DGVENVTVSSSVFTGSQNGVRIKSWARP--------STGFVRNVFFQDLVMKNVE-NPIIIDQNYCPTHEGCPNEYSGVK 324 (394)
T ss_pred CcEEEEEEEeeEEeCCCcEEEEEEecCC--------CCEEEEEEEEEeEEEcCcc-ccEEEEecccCCCCCCcCCCCCeE
Confidence 7899999999999999999999985321 2468999999999999874 5776632 1 1236
Q ss_pred eecEEEEeEEEEecCCccCcceee
Q 041973 350 CRGIILQDIKLTYMNKAAATSSCK 373 (392)
Q Consensus 350 i~~i~~~ni~i~~~~~~~~~~~c~ 373 (392)
++||+|+||+.+.....+..+.|.
T Consensus 325 i~~It~~ni~gt~~~~~a~~l~c~ 348 (394)
T PLN02155 325 ISQVTYKNIQGTSATQEAMKLVCS 348 (394)
T ss_pred EEEEEEEeeEEEecCCceEEEEeC
Confidence 999999999998764433344454
No 16
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.83 E-value=1.3e-17 Score=162.45 Aligned_cols=221 Identities=20% Similarity=0.198 Sum_probs=169.6
Q ss_pred ccEEEEEceEEEecCcccccc-----------CcccEEEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEE
Q 041973 81 NKIAIQIKGTIVAPTDYHVIG-----------KTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFD 149 (392)
Q Consensus 81 s~v~l~~~G~l~~~~~~~~~~-----------~~~~li~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~ 149 (392)
.+++|.+.|+|..... .-|. .+..++.+.+++|+.|+|-++.... .+.+++.
T Consensus 122 ~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp----------------~w~i~~~ 184 (404)
T PLN02188 122 NGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK----------------FFHIALV 184 (404)
T ss_pred eeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC----------------CeEEEEE
Confidence 6788888888865432 1121 1245788889999999996554322 1478999
Q ss_pred ecCcEEEEeeEEecc----ccceEEEeceeeEEEEeEEEECCCCCCCCCceeee-ceecEEEEceEEecCCceEEeCC--
Q 041973 150 WASNVMISGLTSINS----QLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGP-- 222 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~----~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~-- 222 (392)
+|++++|+++++.++ ..++|++..|++|.|+|++|.+.+ |+|.+. +++||+|+|+....+. ++++.+
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~gh-GisiGSlG 258 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPGH-GISVGSLG 258 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCCC-cEEeCCCC
Confidence 999999999999863 347899999999999999999876 789986 5789999999997765 588876
Q ss_pred ------CceeEEEEeeeecCC-ceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecC---------CCCceEEe
Q 041973 223 ------GTRNLYMSSIKCGPG-HGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWAR---------PSNSFVRN 286 (392)
Q Consensus 223 ------~s~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~---------~~~g~v~n 286 (392)
+.+||+|+||++.++ +|+.|++.......+.++||+|+|++|.+...+|.|..... .....|+|
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~n 338 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSD 338 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEe
Confidence 269999999999875 69999885322234679999999999999999999875321 12357999
Q ss_pred EEEEEEEEecC-ceeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeC
Q 041973 287 VLFQNIIMKNV-QNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSA 335 (392)
Q Consensus 287 i~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~ 335 (392)
|+|+||+.+.. ..++.+.. ....+++||+|+||+++..
T Consensus 339 It~~nI~gt~~~~~a~~l~c-----------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 339 IYFKNIRGTSSSQVAVLLKC-----------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEEEEEecCceEEEEEE-----------CCCCCEeeEEEEeeEEEec
Confidence 99999999775 33554442 1245899999999999754
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.79 E-value=6e-17 Score=155.23 Aligned_cols=196 Identities=27% Similarity=0.307 Sum_probs=156.0
Q ss_pred ccEEEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccc----cceEEEeceeeEEE
Q 041973 104 GNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQ----LIHLAINSCKNVIV 179 (392)
Q Consensus 104 ~~li~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~~v~i 179 (392)
..++.+.+++|++|+|-++.... .+.+++.+|++++|+++++.++. .+++++..|++|+|
T Consensus 92 p~~i~~~~~~~~~i~~i~~~nsp----------------~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I 155 (326)
T PF00295_consen 92 PRLIRFNNCKNVTIEGITIRNSP----------------FWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTI 155 (326)
T ss_dssp SESEEEEEEEEEEEESEEEES-S----------------SESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEE
T ss_pred cceeeeeeecceEEEeeEecCCC----------------eeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEE
Confidence 46788999999999995554221 13689999999999999998753 36899999999999
Q ss_pred EeEEEECCCCCCCCCceeeecee-cEEEEceEEecCCceEEeCC---C-----ceeEEEEeeeecCC-ceeEEEecCCCC
Q 041973 180 RNVKLIAPDESPNTDGIHIQSST-GVKITGSIMQTGDDCISIGP---G-----TRNLYMSSIKCGPG-HGVSIGSLGWGV 249 (392)
Q Consensus 180 ~~~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gdD~i~~~~---~-----s~ni~i~n~~~~~~-~gi~igs~g~~~ 249 (392)
+|+.|.+.+ |+|.+...+ ||+|+||.+..+.. +++.+ + .+||+|+||++.+. +|+.|++.- .
T Consensus 156 ~n~~i~~gD-----D~Iaiks~~~ni~v~n~~~~~ghG-isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~ 227 (326)
T PF00295_consen 156 ENCFIDNGD-----DCIAIKSGSGNILVENCTCSGGHG-ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--G 227 (326)
T ss_dssp ESEEEESSS-----ESEEESSEECEEEEESEEEESSSE-EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--T
T ss_pred EEeeccccc-----CcccccccccceEEEeEEEecccc-ceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--c
Confidence 999999876 789998765 99999999987654 77764 2 48999999999865 689998852 2
Q ss_pred CCCcEEEEEEEeeEEeCCcceEEEEeecCC--------CCceEEeEEEEEEEEecCc-eeEEEEeecCCCCCCCCCCCcc
Q 041973 250 NEDGVENVTLTNSRFTGSDNGVRIKSWARP--------SNSFVRNVLFQNIIMKNVQ-NPILIDQNYCPHNQCPHQASGV 320 (392)
Q Consensus 250 ~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~v~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~ 320 (392)
..+.++||+|+|++|.+...++.|...... ....++||+|+||+..... .++.+... ...
T Consensus 228 ~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~-----------~~~ 296 (326)
T PF00295_consen 228 GGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCS-----------PGS 296 (326)
T ss_dssp TSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-B-----------TTS
T ss_pred cceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEEC-----------CcC
Confidence 346799999999999999999988764211 2357999999999998776 56665521 234
Q ss_pred eEEeEEEEeEEEee
Q 041973 321 KISQVTYRNIQGTS 334 (392)
Q Consensus 321 ~i~nI~~~ni~~~~ 334 (392)
+++||+|+||.++.
T Consensus 297 ~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 297 PCSNITFENVNITG 310 (326)
T ss_dssp SEEEEEEEEEEEES
T ss_pred cEEeEEEEeEEEEc
Confidence 79999999999987
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.77 E-value=2.9e-16 Score=152.20 Aligned_cols=274 Identities=17% Similarity=0.231 Sum_probs=151.5
Q ss_pred CCcEEEEcCceEEEEE---EEEecCCCcc-EEEEEc-eEEEecCccccccCcccEEEEEeeeEEEEEc-cEEeCCCCccc
Q 041973 57 KASTIYVPTGRYLIKN---IVFRGPCKNK-IAIQIK-GTIVAPTDYHVIGKTGNWILFVQVDRVSVIG-GTLDAQGAGFW 130 (392)
Q Consensus 57 ~g~~v~ip~G~Y~~~~---l~l~~~~~s~-v~l~~~-G~l~~~~~~~~~~~~~~li~~~~~~nv~I~G-g~idg~g~~~w 130 (392)
...++||+||+|.++. +.|+ ++ -+++++ |..+. +.+......+|++|.| |+|.|..+.|-
T Consensus 231 s~~~lYF~PGVy~ig~~~~l~L~----sn~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 231 SKDTLYFKPGVYWIGSDYHLRLP----SNTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SSSEEEE-SEEEEEBCTC-EEE-----TT--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred CcceEEeCCceEEeCCCccEEEC----CCccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEe
Confidence 3568999999999987 7774 66 488886 53322 3343445689999999 99999887653
Q ss_pred cccCCCCC-------CCC-CCeeEE---EEecCcEEEEeeEEeccccceEEEecee----eEEEEeEEEECCCCCCCCCc
Q 041973 131 ACRKSGQN-------CPV-GSRSIT---FDWASNVMISGLTSINSQLIHLAINSCK----NVIVRNVKLIAPDESPNTDG 195 (392)
Q Consensus 131 ~~~~~~~~-------~~~-~~~~i~---~~~~~nv~I~~v~i~n~~~~~i~~~~~~----~v~i~~~~i~~~~~~~n~DG 195 (392)
........ .+. .-+++. ...+.++.++|++|.++|.|.+.+.... +..|+|.++... |..++||
T Consensus 297 A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGa-W~~qtDG 375 (582)
T PF03718_consen 297 ADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGA-WYFQTDG 375 (582)
T ss_dssp BBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT---
T ss_pred ccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeee-EEeccCC
Confidence 21111000 000 113344 3445689999999999999999999544 589999999864 4689999
Q ss_pred eeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCc--e-eEEEecCCCCCCCcEEEEEEEeeEEeCCc----
Q 041973 196 IHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGH--G-VSIGSLGWGVNEDGVENVTLTNSRFTGSD---- 268 (392)
Q Consensus 196 i~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~--g-i~igs~g~~~~~~~~~ni~i~n~~~~~~~---- 268 (392)
|.+.. +-+|+||+++..||+|.+.. +++.|+||.++..+ + +.+|.. ...+++|.|+|+.+..+.
T Consensus 376 i~ly~--nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~ 446 (582)
T PF03718_consen 376 IELYP--NSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWH 446 (582)
T ss_dssp -B--T--T-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSG
T ss_pred ccccC--CCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecc
Confidence 99985 66789999999999998876 59999999998543 2 565542 345899999999999862
Q ss_pred -----ceEEEEe--ec--C-CCC----ceEEeEEEEEEEEecCc-eeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEe
Q 041973 269 -----NGVRIKS--WA--R-PSN----SFVRNVLFQNIIMKNVQ-NPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGT 333 (392)
Q Consensus 269 -----~gi~i~~--~~--~-~~~----g~v~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~ 333 (392)
.+|-.-+ +. + ... -.|++++|+|+++|+.- ..++|..... .....|+|+.|+.....
T Consensus 447 ~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn--------~~nl~ikN~~~~~w~~~ 518 (582)
T PF03718_consen 447 NNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQN--------YDNLVIKNVHFESWNGL 518 (582)
T ss_dssp GCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEE--------EEEEEEEEEEECEET-C
T ss_pred cCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCC--------CcceEEEEeecccccCc
Confidence 3443332 20 0 011 25799999999999864 4566663210 01123444444433222
Q ss_pred eCCCceEEEEc---CC---CCceecEEEEeEEEEe
Q 041973 334 SATAEAVTFDC---SP---GNPCRGIILQDIKLTY 362 (392)
Q Consensus 334 ~~~~~~~~i~~---~~---~~~i~~i~~~ni~i~~ 362 (392)
.-......+.. .. ....++|.|+|.+|.+
T Consensus 519 ~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 519 DITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGG 553 (582)
T ss_dssp GCSTT-EEE---CCTTT--B--EEEEEEEEEEETT
T ss_pred ccccceeeccccccccccccccccceEEEeEEECC
Confidence 11111112211 11 2247889999988865
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.75 E-value=5.9e-16 Score=147.17 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=133.5
Q ss_pred HHHHHHHhcccCCCcEEEEcCceEEE-EEEEEecCCCccEEEEEceEEEecCccccccCcccEEEEEeeeEEEEEccEEe
Q 041973 45 FLKAWAAACSSVKASTIYVPTGRYLI-KNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLD 123 (392)
Q Consensus 45 iq~Ai~~a~~~~~g~~v~ip~G~Y~~-~~l~l~~~~~s~v~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I~Gg~id 123 (392)
||+||++| ..|.+|+||||+|.+ ++|.+. +++++|.+.|. +. -+|+
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~---~~~Iti~G~g~----------------------~~-----tvid 47 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLD---ADGVTIRGAGM----------------------DE-----TILD 47 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEe---CCCeEEEecCC----------------------Cc-----cEEe
Confidence 69999977 678999999999986 457774 35666655431 00 0233
Q ss_pred CCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCC---CCCCCceeeec
Q 041973 124 AQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDE---SPNTDGIHIQS 200 (392)
Q Consensus 124 g~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~---~~n~DGi~~~~ 200 (392)
+.++. .....+ +..+++++|+++++.++..+++.+..|++++|+++++..... ....+||.+..
T Consensus 48 ~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~ 114 (314)
T TIGR03805 48 FSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVE 114 (314)
T ss_pred cccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEec
Confidence 22210 001233 335788888888888888888888888888888888863211 13457888888
Q ss_pred eecEEEEceEEecC-CceEEeCCCceeEEEEeeeecCC-ceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecC
Q 041973 201 STGVKITGSIMQTG-DDCISIGPGTRNLYMSSIKCGPG-HGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWAR 278 (392)
Q Consensus 201 s~nV~I~n~~i~~g-dD~i~~~~~s~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~ 278 (392)
|++++|++|.++.. |++|.+.. +++++|+||++... .|+.+-. ..++.++++.+.+...|+.+...++
T Consensus 115 s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p~ 184 (314)
T TIGR03805 115 STNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLPG 184 (314)
T ss_pred cCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEeecCC
Confidence 88888888888874 44787776 77888888888754 4666532 2578888888888878888865543
Q ss_pred CCCceEEeEEEEEEEEecC
Q 041973 279 PSNSFVRNVLFQNIIMKNV 297 (392)
Q Consensus 279 ~~~g~v~ni~~~ni~~~~~ 297 (392)
.....-+++++++.++.+.
T Consensus 185 ~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 185 LPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CCcCCccceEEECCEEECC
Confidence 2223346777777776544
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=7.2e-12 Score=124.83 Aligned_cols=154 Identities=14% Similarity=0.244 Sum_probs=127.3
Q ss_pred ccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCC----ceEEeCCCceeEEEEeeeecCCce-
Q 041973 165 QLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGD----DCISIGPGTRNLYMSSIKCGPGHG- 239 (392)
Q Consensus 165 ~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gd----D~i~~~~~s~ni~i~n~~~~~~~g- 239 (392)
+...+.+..|+||++++++|.+++. -++|+..|++++++|..+.+.+ |++.+.+ ++|++|++|+|..++.
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 4467899999999999999988764 4699999999999999998744 5888888 9999999999998754
Q ss_pred eEEEecCCC---CCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCC
Q 041973 240 VSIGSLGWG---VNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQ 316 (392)
Q Consensus 240 i~igs~g~~---~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 316 (392)
+++.+...- ......++|+|+||+|.....++.+.++ ..|.|+||++|||.|.+...+++|++...
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 888764211 1124579999999999988777788776 67999999999999999999999998643
Q ss_pred CCcceEEeEEEEeEEEeeC
Q 041973 317 ASGVKISQVTYRNIQGTSA 335 (392)
Q Consensus 317 ~~~~~i~nI~~~ni~~~~~ 335 (392)
.++.++||+|+++.+...
T Consensus 381 -~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 -RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred -cceeEEEEEEecccccCc
Confidence 246899999999887765
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.13 E-value=3.3e-08 Score=94.27 Aligned_cols=210 Identities=13% Similarity=0.137 Sum_probs=142.8
Q ss_pred EEEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEec-------cccceEEEeceeeEE
Q 041973 106 WILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSIN-------SQLIHLAINSCKNVI 178 (392)
Q Consensus 106 li~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n-------~~~~~i~~~~~~~v~ 178 (392)
.+... +++|+|++-++...+ ...|.+..+++++|+++++.. ...+++.+..|++++
T Consensus 57 ~i~v~-a~~VtI~~ltI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~ 119 (314)
T TIGR03805 57 GLLVT-SDDVTLSDLAVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVL 119 (314)
T ss_pred eEEEE-eCCeEEEeeEEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEE
Confidence 34444 899999996554322 136888999999999999862 246899999999999
Q ss_pred EEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecC-CceeEEEecCCCCCCCcEEEE
Q 041973 179 VRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGP-GHGVSIGSLGWGVNEDGVENV 257 (392)
Q Consensus 179 i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~-~~gi~igs~g~~~~~~~~~ni 257 (392)
|+++++.... .+||.+..|++++|++++++....+|.+.. +.++.|+++++.. ..|+.+-..... .....+++
T Consensus 120 I~~n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~ 193 (314)
T TIGR03805 120 VEDSYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNV 193 (314)
T ss_pred EECCEEECCC----cccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccce
Confidence 9999998643 259999999999999999999888998876 7899999999875 457766332100 12356899
Q ss_pred EEEeeEEeCCcc------eEEEEeecCCCCceE----EeEEEEEEEEecCce-eEEEEeecCCC-CC-CCCCCCcceEEe
Q 041973 258 TLTNSRFTGSDN------GVRIKSWARPSNSFV----RNVLFQNIIMKNVQN-PILIDQNYCPH-NQ-CPHQASGVKISQ 324 (392)
Q Consensus 258 ~i~n~~~~~~~~------gi~i~~~~~~~~g~v----~ni~~~ni~~~~~~~-~i~i~~~~~~~-~~-~~~~~~~~~i~n 324 (392)
+|+++.+.+... |-.+...+ ...|.+ ++++|+|.++++... ++.+..+.... +. .......+..+|
T Consensus 194 ~v~~N~i~~n~~~n~~~~gn~v~~~~-~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (314)
T TIGR03805 194 RVFDNIIFDNNTPNFAPAGSIVASVP-AGTGVVVMANRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPYPRN 272 (314)
T ss_pred EEECCEEECCCCCCCcccCCceecCC-CCcEEEEEcccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCCCcc
Confidence 999999988631 11111111 133433 899999999998764 56554332111 00 000011123478
Q ss_pred EEEEeEEEeeCCCce
Q 041973 325 VTYRNIQGTSATAEA 339 (392)
Q Consensus 325 I~~~ni~~~~~~~~~ 339 (392)
|.+.+-++...+..|
T Consensus 273 v~i~~N~~~~~g~~p 287 (314)
T TIGR03805 273 ISIHDNTFSDGGTNP 287 (314)
T ss_pred eEEEccEeecCCCCC
Confidence 888877777654433
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.87 E-value=3.4e-08 Score=88.54 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=84.8
Q ss_pred EEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCC-----CCc------eeeeceecEEEEceEEecCC
Q 041973 147 TFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPN-----TDG------IHIQSSTGVKITGSIMQTGD 215 (392)
Q Consensus 147 ~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n-----~DG------i~~~~s~nV~I~n~~i~~gd 215 (392)
.|+.|++++++++++.+++- .+..|++++++|+.+.+.....+ -|+ ..+++++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~E---t~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADE---TLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCcc---cCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 46678888888888877653 23457777777777743322111 122 34556889999999888765
Q ss_pred ceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEe
Q 041973 216 DCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMK 295 (392)
Q Consensus 216 D~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~ 295 (392)
- +.. ++||+|.|+.+.+ =.+|- ..+|+++.||++.+.+ +.-+++|++++||++.
T Consensus 170 A---FWn-~eNVtVyDS~i~G---EYLgW--------~SkNltliNC~I~g~Q-----------pLCY~~~L~l~nC~~~ 223 (277)
T PF12541_consen 170 A---FWN-CENVTVYDSVING---EYLGW--------NSKNLTLINCTIEGTQ-----------PLCYCDNLVLENCTMI 223 (277)
T ss_pred c---ccc-CCceEEEcceEee---eEEEE--------EcCCeEEEEeEEeccC-----------ccEeecceEEeCcEee
Confidence 2 333 7899999888742 22221 2389999999998872 3457889999999998
Q ss_pred cCceeE
Q 041973 296 NVQNPI 301 (392)
Q Consensus 296 ~~~~~i 301 (392)
++..++
T Consensus 224 ~tdlaF 229 (277)
T PF12541_consen 224 DTDLAF 229 (277)
T ss_pred cceeee
Confidence 776444
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.83 E-value=2.3e-08 Score=89.67 Aligned_cols=137 Identities=18% Similarity=0.267 Sum_probs=91.9
Q ss_pred EeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCC
Q 041973 110 VQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDE 189 (392)
Q Consensus 110 ~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~ 189 (392)
..+++|+|++-.+.-.....|.+.+-.........--.+.+++|+.++++.+.. ...+++|+||.|+|.++.+.+
T Consensus 95 R~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sKD- 169 (277)
T PF12541_consen 95 RECSNITLENVDIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSKD- 169 (277)
T ss_pred hcccCcEEEeeEeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeC----CEEeeceeeEEEEccEEeccc-
Confidence 345666666644433334456543321000000112345567777777777765 246889999999999998753
Q ss_pred CCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeCCcc
Q 041973 190 SPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDN 269 (392)
Q Consensus 190 ~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~ 269 (392)
. ++.|+||+|.++.+... .+.-.++|+++-||++.+.+|+- +++|++++||+|.++..
T Consensus 170 -----A--FWn~eNVtVyDS~i~GE----YLgW~SkNltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdl 227 (277)
T PF12541_consen 170 -----A--FWNCENVTVYDSVINGE----YLGWNSKNLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDL 227 (277)
T ss_pred -----c--cccCCceEEEcceEeee----EEEEEcCCeEEEEeEEeccCccE-----------eecceEEeCcEeeccee
Confidence 2 57799999999999642 23333799999999998766654 46899999999999876
Q ss_pred eEEE
Q 041973 270 GVRI 273 (392)
Q Consensus 270 gi~i 273 (392)
++.-
T Consensus 228 aFEy 231 (277)
T PF12541_consen 228 AFEY 231 (277)
T ss_pred eeee
Confidence 6544
No 24
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.9e-06 Score=79.91 Aligned_cols=185 Identities=14% Similarity=0.209 Sum_probs=120.1
Q ss_pred CCCcEEEEcCceEEEEEEEEecCCCccEEEEEc-e-EEEecCccccccCcccEEEEEeeeEEEEEccEEeCCCCcccccc
Q 041973 56 VKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIK-G-TIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACR 133 (392)
Q Consensus 56 ~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~-G-~l~~~~~~~~~~~~~~li~~~~~~nv~I~Gg~idg~g~~~w~~~ 133 (392)
.+|..+-|. |+|. +.+.+. .-++|..+ | ++.. ...+..+... ++++.++|.+..+.|....
T Consensus 32 ~pgd~~~i~-g~~~-g~~vIn----r~l~l~ge~ga~l~g-------~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp--- 94 (408)
T COG3420 32 KPGDYYGIS-GRYA-GNFVIN----RALTLRGENGAVLDG-------GGKGSYVTVA-APDVIVEGLTVRGSGRSLP--- 94 (408)
T ss_pred CCCcEEEEe-eeec-ccEEEc----cceeeccccccEEec-------CCcccEEEEe-CCCceeeeEEEecCCCCcc---
Confidence 567777777 6663 334442 33455444 3 3311 1125567776 8999999988877765321
Q ss_pred CCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCC---CCCCCceeeeceecEEEEceE
Q 041973 134 KSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDE---SPNTDGIHIQSSTGVKITGSI 210 (392)
Q Consensus 134 ~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~---~~n~DGi~~~~s~nV~I~n~~ 210 (392)
......+.-...+.-.|+...+.. ..+++.+..+.++.+++.+|..-.+ ...++||+++++++..|..+.
T Consensus 95 ------~m~agI~v~~~at~A~Vr~N~l~~-n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~nd 167 (408)
T COG3420 95 ------AMDAGIFVGRTATGAVVRHNDLIG-NSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGND 167 (408)
T ss_pred ------cccceEEeccCcccceEEcccccc-cceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCc
Confidence 122223444456667777777765 4579999999999999999975433 345789999999999999999
Q ss_pred EecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEE
Q 041973 211 MQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRI 273 (392)
Q Consensus 211 i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i 273 (392)
++-+.|||.... +++-.|+++.+.. +..|.+ -....+..++++.+.++..|..+
T Consensus 168 isy~rDgIy~~~-S~~~~~~gnr~~~---~RygvH-----yM~t~~s~i~dn~s~~N~vG~AL 221 (408)
T COG3420 168 ISYGRDGIYSDT-SQHNVFKGNRFRD---LRYGVH-----YMYTNDSRISDNSSRDNRVGYAL 221 (408)
T ss_pred cccccceEEEcc-cccceecccchhh---eeeeEE-----EEeccCcEeecccccCCcceEEE
Confidence 999999998887 6777777777653 333332 11224455555555555555444
No 25
>PLN02497 probable pectinesterase
Probab=98.78 E-value=2e-06 Score=81.51 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHhhh--ccccCCce-----eEEEecCCccCCCCcccHHHHHHHHHHhcccCCC--cEEEEcCceEEEEEE
Q 041973 3 AKLLISCILSLFLT--FFFKPSNA-----AYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKA--STIYVPTGRYLIKNI 73 (392)
Q Consensus 3 ~~~l~~~~~~~~l~--~~~~~~~~-----~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g--~~v~ip~G~Y~~~~l 73 (392)
+|+++.|++++|+. ..+.+.+. .+.|. .||. -|-.-||+||+++ ..... .+++|.||+|+ ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Va-----~dGs-Gdf~TIq~AIdav-P~~~~~~~~I~Ik~G~Y~-EkV 75 (331)
T PLN02497 4 HRIIIGLIALCCFCLPHLIEAKPFGVYQQQVFVD-----QSGH-GNFTTIQSAIDSV-PSNNKHWFCINVKAGLYR-EKV 75 (331)
T ss_pred eeehHHHHHHHHhhcchhhhcCCccccceEEEEC-----CCCC-CCccCHHHHHhhc-cccCCceEEEEEeCcEEE-EEE
Confidence 36666665555443 23333322 23342 2343 3466799999975 33222 35899999996 446
Q ss_pred EEecCCCccEEEEEce
Q 041973 74 VFRGPCKNKIAIQIKG 89 (392)
Q Consensus 74 ~l~~~~~s~v~l~~~G 89 (392)
.++.. |.+++|.++|
T Consensus 76 ~Ip~~-k~~itl~G~g 90 (331)
T PLN02497 76 KIPYD-KPFIVLVGAG 90 (331)
T ss_pred EecCC-CCcEEEEecC
Confidence 66322 5788888775
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.76 E-value=7.2e-07 Score=86.72 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=101.4
Q ss_pred eeEEEEecCcEEEEeeEEeccc------cceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEec-CCc
Q 041973 144 RSITFDWASNVMISGLTSINSQ------LIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQT-GDD 216 (392)
Q Consensus 144 ~~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gdD 216 (392)
.++.-...++++|++++|.++. ..+|.+..|++++|+++++.+.. .-||.+..|+ ..|.++.+.. .+.
T Consensus 107 ~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 107 SLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred eEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccc
Confidence 4566678999999999998865 34789999999999999998763 1378888888 6666666654 455
Q ss_pred eEEeCCCceeEEEEeeeecCCc--eeEEEec------------------------CCCCCC---CcEEEEEEEeeEEeCC
Q 041973 217 CISIGPGTRNLYMSSIKCGPGH--GVSIGSL------------------------GWGVNE---DGVENVTLTNSRFTGS 267 (392)
Q Consensus 217 ~i~~~~~s~ni~i~n~~~~~~~--gi~igs~------------------------g~~~~~---~~~~ni~i~n~~~~~~ 267 (392)
.|.++. +++++|+++++...+ ||.+-.. ++++.. ....+++|+++++.++
T Consensus 182 ~I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~ 260 (455)
T TIGR03808 182 AIVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNC 260 (455)
T ss_pred eEEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEecc
Confidence 566655 678888888776532 3444322 111111 1246788888888888
Q ss_pred c-ceEEEEeecCCCCceEEeEEEEEEEEecCce-eEEEE
Q 041973 268 D-NGVRIKSWARPSNSFVRNVLFQNIIMKNVQN-PILID 304 (392)
Q Consensus 268 ~-~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~-~i~i~ 304 (392)
. .|+++.+. +|+.|++.++++..+ ++...
T Consensus 261 r~dgI~~nss--------s~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 261 DYSAVRGNSA--------SNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred ccceEEEEcc--------cCcEEECcEeeeeeeeEEEEE
Confidence 7 78888653 556777777777666 66544
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.69 E-value=2.5e-07 Score=78.58 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=96.5
Q ss_pred eEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCc
Q 041973 145 SITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGT 224 (392)
Q Consensus 145 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s 224 (392)
.|.+....+++|+++++.+....++.+..+..++|++++|.. ...|+.+....++.+++|.+.....++.+. .+
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 366777888999999999998899999999999999999987 236899998899999999999877677777 47
Q ss_pred eeEEEEeeeecCC--ceeEEEecCCCCCCCcEEEEEEEeeEEeCCc-ceEEEEeecCCCCceEEeEEEEEEEEecCc-ee
Q 041973 225 RNLYMSSIKCGPG--HGVSIGSLGWGVNEDGVENVTLTNSRFTGSD-NGVRIKSWARPSNSFVRNVLFQNIIMKNVQ-NP 300 (392)
Q Consensus 225 ~ni~i~n~~~~~~--~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~-~~ 300 (392)
..++|++|.+... .|+.+.. ...+++|++|+|.+.. .|+.+.... -.+++++++++.+.. .+
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 8999999998854 2676631 2467999999999976 778876431 346778888887654 45
Q ss_pred EEEE
Q 041973 301 ILID 304 (392)
Q Consensus 301 i~i~ 304 (392)
+.+.
T Consensus 142 i~~~ 145 (158)
T PF13229_consen 142 IYLI 145 (158)
T ss_dssp EE-T
T ss_pred EEEE
Confidence 5443
No 28
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.61 E-value=5.2e-06 Score=81.75 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=102.4
Q ss_pred eEEEeceeeEEEEeEEEECCCCCCCCCceeeecee----cEEEEceEEec----CCceEEeCCCceeEEEEeeeecCC-c
Q 041973 168 HLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSST----GVKITGSIMQT----GDDCISIGPGTRNLYMSSIKCGPG-H 238 (392)
Q Consensus 168 ~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~----nV~I~n~~i~~----gdD~i~~~~~s~ni~i~n~~~~~~-~ 238 (392)
++....++++.+++++|..|+. -.+.+.+.+ +..|+|...-. ..|++.+.. +-+|+||.+... +
T Consensus 322 ~~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nDD 394 (582)
T PF03718_consen 322 HISANGGQTLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVNDD 394 (582)
T ss_dssp ECS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS-
T ss_pred hhccCCcceEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecCc
Confidence 3445678899999999987763 247777544 47888888764 578998886 667899999854 4
Q ss_pred eeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCc---------eeEEEE-eecC
Q 041973 239 GVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQ---------NPILID-QNYC 308 (392)
Q Consensus 239 gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~---------~~i~i~-~~~~ 308 (392)
+|.+- ..++.++||.++....|--|.... ....+++|.|+|+.+.... .+|.-. .+|.
T Consensus 395 ~iKlY----------hS~v~v~~~ViWk~~Ngpiiq~GW--~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~ 462 (582)
T PF03718_consen 395 AIKLY----------HSNVSVSNTVIWKNENGPIIQWGW--TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYD 462 (582)
T ss_dssp SEE------------STTEEEEEEEEEE-SSS-SEE--C--S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTT
T ss_pred hhhee----------ecCcceeeeEEEecCCCCeEEeec--cccccCceEEeeeEEEeeeeecccCCCCceeEecccccc
Confidence 57652 268999999999987665454321 3456999999999997663 233322 2341
Q ss_pred CCCCC-CCCCCcceEEeEEEEeEEEeeCCCceEEEEcCCCCceecEEEEeEEEEecCC
Q 041973 309 PHNQC-PHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNK 365 (392)
Q Consensus 309 ~~~~~-~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~ 365 (392)
+... ........|++++|+|++..+.....+.| .|.....|+.++|+++..-.+
T Consensus 463 -~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri--~plqn~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 463 -DMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRI--YPLQNYDNLVIKNVHFESWNG 517 (582)
T ss_dssp -S-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEECEET-
T ss_pred -cccCCCCCCcccceeeEEEEeEEEecccceeEEE--eecCCCcceEEEEeecccccC
Confidence 1111 11122457999999999999864444455 456677889999999985333
No 29
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.59 E-value=4.1e-06 Score=81.40 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHhcccCCCcEEEEcCceEEEEEEEEe
Q 041973 41 STQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFR 76 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~ 76 (392)
+.++||+||+.| .+|.+|+++.|+|.-..|.+.
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~ 35 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFK 35 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEE
Confidence 578999999987 789999999999973345553
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.57 E-value=8.8e-07 Score=75.21 Aligned_cols=139 Identities=20% Similarity=0.272 Sum_probs=95.5
Q ss_pred EEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEEC
Q 041973 107 ILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIA 186 (392)
Q Consensus 107 i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~ 186 (392)
|.+.+..+++|++..|...+ ...|.+.....++|++.++.+ ...++.+....+++++++.+..
T Consensus 3 i~i~~~~~~~i~~~~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~ 65 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISD 65 (158)
T ss_dssp EEETTCEC-EEESEEEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES
T ss_pred EEEECCcCeEEeeeEEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEE
Confidence 34455667888886665432 257889899999999999999 7788999999999999999987
Q ss_pred CCCCCCCCceeeeceecEEEEceEEecC-CceEEeCCCceeEEEEeeeecCC--ceeEEEecCCCCCCCcEEEEEEEeeE
Q 041973 187 PDESPNTDGIHIQSSTGVKITGSIMQTG-DDCISIGPGTRNLYMSSIKCGPG--HGVSIGSLGWGVNEDGVENVTLTNSR 263 (392)
Q Consensus 187 ~~~~~n~DGi~~~~s~nV~I~n~~i~~g-dD~i~~~~~s~ni~i~n~~~~~~--~gi~igs~g~~~~~~~~~ni~i~n~~ 263 (392)
.. .|+.+..+.+++|++|.+... +.+|.+...+++++|++|++... .|+.+... .-.+++|++|+
T Consensus 66 ~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~ 133 (158)
T PF13229_consen 66 NG-----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNT 133 (158)
T ss_dssp -S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEE
T ss_pred cc-----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEE
Confidence 53 688888999999999999985 44888874267899999999853 57777543 13488999999
Q ss_pred EeCCc-ceEEEE
Q 041973 264 FTGSD-NGVRIK 274 (392)
Q Consensus 264 ~~~~~-~gi~i~ 274 (392)
+.+.. .|+.+.
T Consensus 134 i~~~~~~gi~~~ 145 (158)
T PF13229_consen 134 ISNNGGNGIYLI 145 (158)
T ss_dssp EECESSEEEE-T
T ss_pred EEeCcceeEEEE
Confidence 99975 677764
No 31
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.54 E-value=1.7e-05 Score=72.08 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=46.4
Q ss_pred hHHHHHHHHhhh-cc--ccCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCce-E-EEEE-EEEecC
Q 041973 5 LLISCILSLFLT-FF--FKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGR-Y-LIKN-IVFRGP 78 (392)
Q Consensus 5 ~l~~~~~~~~l~-~~--~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~-Y-~~~~-l~l~~~ 78 (392)
+|....+++++. ++ +.+...++++.||-. .|=-++|.+|+.. +.+|.+|+|- . .+.. +.++
T Consensus 11 f~ta~sala~~hsp~~ra~~~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip-- 77 (464)
T PRK10123 11 FLTASSALAFLHTPFARALPARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIP-- 77 (464)
T ss_pred hhhhhhHHHHhcCHhhhhcCCCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEeC--
Confidence 444455555552 22 333456899999953 4667788988864 4689999994 2 2333 5553
Q ss_pred CCccEEEEEceEEEe
Q 041973 79 CKNKIAIQIKGTIVA 93 (392)
Q Consensus 79 ~~s~v~l~~~G~l~~ 93 (392)
..-||.+.|.++.
T Consensus 78 --~gktl~v~g~l~g 90 (464)
T PRK10123 78 --PGKTLHILGSLRG 90 (464)
T ss_pred --CCCeEEEEEEeec
Confidence 5667777776644
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=3.4e-05 Score=70.74 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=41.5
Q ss_pred Cceee-eceecEEEEceEEec---------CCceEEeCCCceeEEEEeeeecCC-ceeEEEecCCCCCCCcEEEEEEEee
Q 041973 194 DGIHI-QSSTGVKITGSIMQT---------GDDCISIGPGTRNLYMSSIKCGPG-HGVSIGSLGWGVNEDGVENVTLTNS 262 (392)
Q Consensus 194 DGi~~-~~s~nV~I~n~~i~~---------gdD~i~~~~~s~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~ 262 (392)
|+|.+ ..++|+.|++|++.. +|..+.++-++..|+|.+|+|... .++-+|+........+-..|++.+|
T Consensus 145 D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhN 224 (345)
T COG3866 145 DAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHN 224 (345)
T ss_pred CcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecc
Confidence 55555 445666666666654 244456665666777777776643 2455555422111234456777777
Q ss_pred EEeCC
Q 041973 263 RFTGS 267 (392)
Q Consensus 263 ~~~~~ 267 (392)
.|.+.
T Consensus 225 yFkn~ 229 (345)
T COG3866 225 YFKNL 229 (345)
T ss_pred ccccc
Confidence 77764
No 33
>PLN02773 pectinesterase
Probab=98.45 E-value=0.00012 Score=69.27 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=38.1
Q ss_pred CceeEEEecCCccCCCCcccHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 22 SNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 22 ~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
++..+.|.. ||.. |=.-||+||+++ .... --+|+|.||+|. ..|.++.. |.+++|.+++
T Consensus 3 ~~~~i~Va~-----dGsG-df~TIq~Aida~-P~~~~~~~~I~Ik~G~Y~-E~V~I~~~-k~~itl~G~~ 63 (317)
T PLN02773 3 ARRVLRVAQ-----DGSG-DYCTVQDAIDAV-PLCNRCRTVIRVAPGVYR-QPVYVPKT-KNLITLAGLS 63 (317)
T ss_pred cceEEEECC-----CCCC-CccCHHHHHhhc-hhcCCceEEEEEeCceEE-EEEEECcC-CccEEEEeCC
Confidence 345556633 3332 366799999975 3322 247889999998 55777432 4678888865
No 34
>PLN02634 probable pectinesterase
Probab=98.42 E-value=0.00013 Score=69.85 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|=.-||+||+++ .+.. -.+++|.||+|. ..+.++.. |.+++|.++|
T Consensus 67 df~TIQaAIda~-P~~~~~r~vI~Ik~GvY~-EkV~Ip~~-k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSV-PKNNTMSVTIKINAGFYR-EKVVVPAT-KPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhC-cccCCccEEEEEeCceEE-EEEEEcCC-CCeEEEEecC
Confidence 466799999975 4322 246889999997 45666422 5789998876
No 35
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.40 E-value=1.7e-05 Score=72.76 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=85.7
Q ss_pred eEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCc
Q 041973 145 SITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGT 224 (392)
Q Consensus 145 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s 224 (392)
.+.+..+.+++|++.++.+. ..++++..+++.+|+++++.... .||.+..+.+.+|+++.+.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~-----~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNG-----YGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccC-----CCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 45777888888888888876 67888888888888888887643 67888887777888888887666887776 5
Q ss_pred eeEEEEeeeecC-CceeEEEecCCCCCCCcEEEEEEEeeEEeCC-cceEEE
Q 041973 225 RNLYMSSIKCGP-GHGVSIGSLGWGVNEDGVENVTLTNSRFTGS-DNGVRI 273 (392)
Q Consensus 225 ~ni~i~n~~~~~-~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~-~~gi~i 273 (392)
.+.+|+++++.+ ..||.+... .+.+|++++|.+. ..||.+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 667788888763 346776432 5777888888887 778773
No 36
>PLN02480 Probable pectinesterase
Probab=98.39 E-value=0.00025 Score=68.00 Aligned_cols=198 Identities=14% Similarity=0.121 Sum_probs=119.3
Q ss_pred ccHHHHHHHHHHhcccCCCc----EEEEcCceEEEEEEEEecCCCccEEEEEceEEEecCccccccCcccEEEEEeeeEE
Q 041973 40 DSTQAFLKAWAAACSSVKAS----TIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRV 115 (392)
Q Consensus 40 ddt~aiq~Ai~~a~~~~~g~----~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv 115 (392)
.|-.-||+||+++ . .+. +|+|.+|+|. ..+.++.. |.+++|.++|. +..
T Consensus 58 g~f~TIQ~AIdaa-p--~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp~ItL~G~g~----------------------~~T 110 (343)
T PLN02480 58 GDFTSVQSAIDAV-P--VGNSEWIIVHLRKGVYR-EKVHIPEN-KPFIFMRGNGK----------------------GRT 110 (343)
T ss_pred CCcccHHHHHhhC-c--cCCCceEEEEEcCcEEE-EEEEECCC-CceEEEEecCC----------------------CCe
Confidence 4677899999976 3 333 4789999998 66777421 45677766541 001
Q ss_pred EEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccc---------cceEEE-eceeeEEEEeEEEE
Q 041973 116 SVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQ---------LIHLAI-NSCKNVIVRNVKLI 185 (392)
Q Consensus 116 ~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~---------~~~i~~-~~~~~v~i~~~~i~ 185 (392)
.|.+ +... . . ......+.+ ..+++++++++|+|+. ...+.+ ...+.+.+.+|+|.
T Consensus 111 vI~~-----~~~~------~-~--~~~saTvtV-~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~ 175 (343)
T PLN02480 111 SIVW-----SQSS------S-D--NAASATFTV-EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFY 175 (343)
T ss_pred EEEc-----cccc------c-C--CCCceEEEE-ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEe
Confidence 1111 1000 0 0 001123333 5688899999999872 234555 36789999999999
Q ss_pred CCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCC-------ceeEEEecCCCCCCCcEEEEE
Q 041973 186 APDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPG-------HGVSIGSLGWGVNEDGVENVT 258 (392)
Q Consensus 186 ~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~-------~gi~igs~g~~~~~~~~~ni~ 258 (392)
..++. +... ..+-.+++|+|...=|-|. |.....+++|++..- .|. |=..+.. ...-....
T Consensus 176 G~QDT-----Ly~~-~gR~yf~~C~IeG~VDFIF---G~g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r~--~~~~~Gfv 243 (343)
T PLN02480 176 STHNT-----LFDY-KGRHYYHSCYIQGSIDFIF---GRGRSIFHNCEIFVIADRRVKIYGS-ITAHNRE--SEDNSGFV 243 (343)
T ss_pred cccce-----eEeC-CCCEEEEeCEEEeeeeEEc---cceeEEEEccEEEEecCCCCCCceE-EEcCCCC--CCCCCEEE
Confidence 87643 3222 2467889999987666552 235889999988631 131 1111111 12345789
Q ss_pred EEeeEEeCCcceEEEE-eecCCCCceEEeEEEEEEEEecC
Q 041973 259 LTNSRFTGSDNGVRIK-SWARPSNSFVRNVLFQNIIMKNV 297 (392)
Q Consensus 259 i~n~~~~~~~~gi~i~-~~~~~~~g~v~ni~~~ni~~~~~ 297 (392)
|.||++.+. ....+. .| +....+.|.|+.|.+.
T Consensus 244 F~~C~i~g~-g~~yLGRPW-----~~ya~vVf~~t~l~~~ 277 (343)
T PLN02480 244 FIKGKVYGI-GEVYLGRAK-----GAYSRVIFAKTYLSKT 277 (343)
T ss_pred EECCEEccc-CceeeecCC-----CCcceEEEEecccCCe
Confidence 999999875 233442 22 3468899999998764
No 37
>PLN02176 putative pectinesterase
Probab=98.38 E-value=0.00022 Score=68.10 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++ .+.. --+++|++|+|. ..+.++.. |.+++|.++|
T Consensus 50 df~TIq~AIdav-P~~~~~~~~I~Ik~GvY~-EkV~Ip~~-k~~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSI-PLQNQNWIRILIQNGIYR-EKVTIPKE-KGYIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhc-hhcCCceEEEEECCcEEE-EEEEECCC-CccEEEEEcC
Confidence 466799999965 3322 236889999997 55666432 5789998875
No 38
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.35 E-value=1.5e-05 Score=73.14 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=110.9
Q ss_pred eeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCC
Q 041973 144 RSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPG 223 (392)
Q Consensus 144 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~ 223 (392)
..|.+.++++..|++.++.+. ..++.+..+.+++|+++++... ..||++..+++++|+++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 357888999999999999875 4678899999999999999875 479999999999999999999779999988
Q ss_pred ceeEEEEeeeecCC-ceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecC-ceeE
Q 041973 224 TRNLYMSSIKCGPG-HGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNV-QNPI 301 (392)
Q Consensus 224 s~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~-~~~i 301 (392)
+.+.+|+++++... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..++
T Consensus 87 s~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi 149 (236)
T PF05048_consen 87 SSNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGI 149 (236)
T ss_pred CCCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccce
Confidence 44559999999754 5776643 25688999999988899998632 5677778888777 6777
Q ss_pred E
Q 041973 302 L 302 (392)
Q Consensus 302 ~ 302 (392)
.
T Consensus 150 ~ 150 (236)
T PF05048_consen 150 Y 150 (236)
T ss_pred E
Confidence 7
No 39
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.34 E-value=4e-05 Score=69.81 Aligned_cols=168 Identities=22% Similarity=0.285 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcccCCCcEEEEcCceEEEE-----EEEEecCCCccEEEEEceEEEecCccccccCcccEEEEEeeeEEEE
Q 041973 43 QAFLKAWAAACSSVKASTIYVPTGRYLIK-----NIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSV 117 (392)
Q Consensus 43 ~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~-----~l~l~~~~~s~v~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I 117 (392)
+-|++|++.| ..+.+|++-||+|.-. +|.+ ++.++|.++..-+. ...+.+
T Consensus 16 ~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i----~~gVtl~G~~~~kG------------------~~~il~ 70 (246)
T PF07602_consen 16 KTITKALQAA---QPGDTIQLAPGTYSEATGETFPIII----KPGVTLIGNESNKG------------------QIDILI 70 (246)
T ss_pred HHHHHHHHhC---CCCCEEEECCceeccccCCcccEEe----cCCeEEeecccCCC------------------cceEEe
Confidence 4699999977 6788999999999643 3666 47888876532111 012222
Q ss_pred Ec-c---EEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEecc---ccceEEEeceeeEEEEeEEEECCCCC
Q 041973 118 IG-G---TLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINS---QLIHLAINSCKNVIVRNVKLIAPDES 190 (392)
Q Consensus 118 ~G-g---~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~---~~~~i~~~~~~~v~i~~~~i~~~~~~ 190 (392)
.| + +|+|.+... . ...+.+....+.+|+++++.|+ ...++.+..+ +.+|+|++|....
T Consensus 71 ~g~~~~~~I~g~~~~~----------~--~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~-- 135 (246)
T PF07602_consen 71 TGGGTGPTISGGGPDL----------S--GQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG-- 135 (246)
T ss_pred cCCceEEeEeccCccc----------c--ceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc--
Confidence 22 1 233332100 0 2345666678888888888876 2345666555 7777777776532
Q ss_pred CCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecC-CceeEEEecCCCCCCCcEEEEEEEeeEEeCCcc
Q 041973 191 PNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGP-GHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDN 269 (392)
Q Consensus 191 ~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~-~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~ 269 (392)
.+||.+.+.. .+....+++|+++.+.. ..|+++-.. ..+++ ..|+|+.+++...
T Consensus 136 --~~GI~v~g~~-----------------~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~~~~-n~I~NN~I~~N~~ 190 (246)
T PF07602_consen 136 --REGIFVTGTS-----------------ANPGINGNVISGNSIYFNKTGISISDN-----AAPVE-NKIENNIIENNNI 190 (246)
T ss_pred --cccEEEEeee-----------------cCCcccceEeecceEEecCcCeEEEcc-----cCCcc-ceeeccEEEeCCc
Confidence 3454443221 11123455566666653 357777432 12233 4668888888777
Q ss_pred eEEEEe
Q 041973 270 GVRIKS 275 (392)
Q Consensus 270 gi~i~~ 275 (392)
||.+..
T Consensus 191 Gi~~~~ 196 (246)
T PF07602_consen 191 GIVAIG 196 (246)
T ss_pred CeEeec
Confidence 887653
No 40
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=2.1e-05 Score=72.12 Aligned_cols=180 Identities=19% Similarity=0.240 Sum_probs=118.4
Q ss_pred EEEEEceEEEecCccccccCcccEEEEEeeeEEEEEc-cEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEE
Q 041973 83 IAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIG-GTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTS 161 (392)
Q Consensus 83 v~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i 161 (392)
+.+.+.|+|.++. +. ...+.+..+.|.+|.| |.= . .-....+.++...||.|++++|
T Consensus 77 ~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~-a---------------~~~g~gl~i~~a~NVIirNltf 134 (345)
T COG3866 77 VIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGAD-A---------------TLVGGGLKIRDAGNVIIRNLTF 134 (345)
T ss_pred EEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccc-c---------------EEEeceEEEEeCCcEEEEeeEE
Confidence 3555577776542 11 2247788788888888 541 0 1123468888999999999999
Q ss_pred eccc-----cceEEE-eceeeEEEEeEEEECCCC---CCCCCce-eee-ceecEEEEceEEecCCceEEeCCC-------
Q 041973 162 INSQ-----LIHLAI-NSCKNVIVRNVKLIAPDE---SPNTDGI-HIQ-SSTGVKITGSIMQTGDDCISIGPG------- 223 (392)
Q Consensus 162 ~n~~-----~~~i~~-~~~~~v~i~~~~i~~~~~---~~n~DGi-~~~-~s~nV~I~n~~i~~gdD~i~~~~~------- 223 (392)
...+ ...|.+ ...+++-|+++++..... ....||. ++. .+.+|+|++|+|...+-++-+.+.
T Consensus 135 ~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~ 214 (345)
T COG3866 135 EGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDD 214 (345)
T ss_pred EeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccC
Confidence 8766 467888 688999999999976321 2234664 443 467899999999987777666652
Q ss_pred -ceeEEEEeeeecCC--ce--eEEEecCCCCCCCcEEEEEEEeeEEeCCc-ceEEEEeecCCCCceEEeEEEEEEEEecC
Q 041973 224 -TRNLYMSSIKCGPG--HG--VSIGSLGWGVNEDGVENVTLTNSRFTGSD-NGVRIKSWARPSNSFVRNVLFQNIIMKNV 297 (392)
Q Consensus 224 -s~ni~i~n~~~~~~--~g--i~igs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~v~ni~~~ni~~~~~ 297 (392)
-.+|++.+|+|.+. ++ +++| -+++-|+.++... .|+.+.. |.-..|..|+..+++.
T Consensus 215 ~~~kvT~hhNyFkn~~qR~PriRfG------------~vHvyNNYy~~~~~~g~a~~i------G~~AkiyvE~NyF~~~ 276 (345)
T COG3866 215 GKYKVTIHHNYFKNLYQRGPRIRFG------------MVHVYNNYYEGNPKFGVAITI------GTSAKIYVENNYFENG 276 (345)
T ss_pred CceeEEEeccccccccccCCceEee------------EEEEeccccccCcccceEEee------ccceEEEEecceeccC
Confidence 36699999999763 33 5554 4677788877543 4444421 2223456666666665
Q ss_pred ceeEE
Q 041973 298 QNPIL 302 (392)
Q Consensus 298 ~~~i~ 302 (392)
..++.
T Consensus 277 ~~~~~ 281 (345)
T COG3866 277 SEGLG 281 (345)
T ss_pred CCCce
Confidence 54443
No 41
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=98.30 E-value=0.00041 Score=69.78 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHhccc--CCCcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSS--VKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~--~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++..+ ..--+++|.||+|. ..+.++.. |.+++|.++|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~nItl~G~g 284 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTK-QKNVMLVGDG 284 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCC-CceEEEEEcC
Confidence 466799999864221 12357899999997 55666432 5789988876
No 42
>PLN02432 putative pectinesterase
Probab=98.26 E-value=0.00056 Score=64.12 Aligned_cols=178 Identities=16% Similarity=0.114 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEceEEEecCccccccCcccEEEEEeeeEEEEE
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVI 118 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I~ 118 (392)
|-.-||+||+++ .+.. -.+++|.||+|. ..+.++.. |.+++|.+++.- ...|......
T Consensus 22 ~f~TIq~Aida~-p~~~~~~~~I~I~~G~Y~-E~V~ip~~-k~~itl~G~~~~------------~TvI~~~~~~----- 81 (293)
T PLN02432 22 DFRKIQDAIDAV-PSNNSQLVFIWVKPGIYR-EKVVVPAD-KPFITLSGTQAS------------NTIITWNDGG----- 81 (293)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEeCceeE-EEEEEecc-CceEEEEEcCCC------------CeEEEecCCc-----
Confidence 466799999975 3322 246889999995 44666322 568888776410 0011110000
Q ss_pred ccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceee
Q 041973 119 GGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHI 198 (392)
Q Consensus 119 Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~ 198 (392)
++ .+...+ ....+++..++++|+|...-+ ...+-+
T Consensus 82 -~~-------------------~~saT~-~v~a~~f~a~nlt~~Nt~g~~------------------------~QAvAl 116 (293)
T PLN02432 82 -DI-------------------FESPTL-SVLASDFVGRFLTIQNTFGSS------------------------GKAVAL 116 (293)
T ss_pred -cc-------------------ccceEE-EEECCCeEEEeeEEEeCCCCC------------------------CceEEE
Confidence 00 001122 234577888888888763210 011211
Q ss_pred e-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeCCc--ceEEEEe
Q 041973 199 Q-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSD--NGVRIKS 275 (392)
Q Consensus 199 ~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~--~gi~i~~ 275 (392)
. ..++..+.+|.|....|.+.... ..-.++||++.+.-++-+|. -...|++|++.... .| .|..
T Consensus 117 ~v~gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~----------g~a~Fe~c~i~s~~~~~g-~itA 183 (293)
T PLN02432 117 RVAGDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGN----------AASLFEKCHLHSLSPNNG-AITA 183 (293)
T ss_pred EEcCCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecC----------ceEEEEeeEEEEecCCCC-eEEe
Confidence 1 23567777777777667665543 24577777777665555553 24667777775421 12 3333
Q ss_pred ecCCCCceEEeEEEEEEEEec
Q 041973 276 WARPSNSFVRNVLFQNIIMKN 296 (392)
Q Consensus 276 ~~~~~~g~v~ni~~~ni~~~~ 296 (392)
..+.....-..+.|.||++..
T Consensus 184 ~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 184 QQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred cCCCCCCCCceEEEEeeEEcc
Confidence 221112233457788888765
No 43
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=98.25 E-value=0.00035 Score=71.28 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHhccc-C--CCcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSS-V--KASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~-~--~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
+-.-||+||+++ .+ . .--+|+|.+|+|. ..+.++.. |.+++|.++|
T Consensus 252 ~f~TIq~Av~a~-p~~~~~~r~vI~vk~GvY~-E~V~i~~~-k~~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAA-PDNNGDRKFVIRIKEGVYE-ETVRVPLE-KKNVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhh-hhccCCccEEEEEeCceEE-eeeeecCC-CccEEEEecC
Confidence 456799999976 33 1 2348999999997 44666432 5788888876
No 44
>PLN02682 pectinesterase family protein
Probab=98.25 E-value=0.00072 Score=65.19 Aligned_cols=192 Identities=12% Similarity=0.070 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce---EEEecCccccccCcccEEEEEeeeEE
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG---TIVAPTDYHVIGKTGNWILFVQVDRV 115 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G---~l~~~~~~~~~~~~~~li~~~~~~nv 115 (392)
|-.-||+||+++ .... -.+++|.||+|. ..+.++.. |.+++|.++| ++. ......
T Consensus 81 df~TIQ~AIdav-P~~~~~r~vI~Ik~G~Y~-EkV~Ip~~-k~~Itl~G~g~~~TiI---------------t~~~~a-- 140 (369)
T PLN02682 81 DFTTIQAAIDSL-PVINLVRVVIKVNAGTYR-EKVNIPPL-KAYITLEGAGADKTII---------------QWGDTA-- 140 (369)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEeCceee-EEEEEecc-CceEEEEecCCCccEE---------------Eecccc--
Confidence 456799999965 3322 247889999997 55666422 5789998876 221 111000
Q ss_pred EEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCc
Q 041973 116 SVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDG 195 (392)
Q Consensus 116 ~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DG 195 (392)
+.....|..+ ... ...-.....+++..++++|+|+....- . .......
T Consensus 141 ----~~~~~~g~~~---------gT~-~SAT~~v~a~~F~a~nlTf~Nt~~~~~--~----------------g~~g~QA 188 (369)
T PLN02682 141 ----DTPGPGGRPL---------GTY-GSATFAVNSPYFIAKNITFKNTAPVPP--P----------------GALGKQA 188 (369)
T ss_pred ----CccCCCCCcc---------ccc-cceEEEEECCCeEEEeeEEEcccccCC--C----------------CCCcccE
Confidence 0000001000 011 122334456788888888888642100 0 0000111
Q ss_pred eeee-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeCCcc-eEEE
Q 041973 196 IHIQ-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDN-GVRI 273 (392)
Q Consensus 196 i~~~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~-gi~i 273 (392)
+-+. .+++..+.||.|....|-+..+. ..-.++||++.+.-++-+|. -...|++|++..... .-.|
T Consensus 189 VAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~----------g~a~Fe~C~I~s~~~~~G~I 256 (369)
T PLN02682 189 VALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN----------GLSLYEGCHLHAIARNFGAL 256 (369)
T ss_pred EEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC----------ceEEEEccEEEEecCCCeEE
Confidence 2221 23566666777766666655543 24566777776655555543 256666666654211 1123
Q ss_pred EeecCCCCceEEeEEEEEEEEec
Q 041973 274 KSWARPSNSFVRNVLFQNIIMKN 296 (392)
Q Consensus 274 ~~~~~~~~g~v~ni~~~ni~~~~ 296 (392)
.+..+.....-....|.||++..
T Consensus 257 TA~~r~~~~~~~GfvF~~C~itg 279 (369)
T PLN02682 257 TAQKRQSVLEDTGFSFVNCKVTG 279 (369)
T ss_pred ecCCCCCCCCCceEEEEeeEecC
Confidence 22111111223456677777765
No 45
>smart00656 Amb_all Amb_all domain.
Probab=98.24 E-value=7.5e-05 Score=65.99 Aligned_cols=99 Identities=26% Similarity=0.339 Sum_probs=69.8
Q ss_pred eEEEeceeeEEEEeEEEECCCC--CCCCCceeeeceecEEEEceEEecC----------CceEEeCCCceeEEEEeeeec
Q 041973 168 HLAINSCKNVIVRNVKLIAPDE--SPNTDGIHIQSSTGVKITGSIMQTG----------DDCISIGPGTRNLYMSSIKCG 235 (392)
Q Consensus 168 ~i~~~~~~~v~i~~~~i~~~~~--~~n~DGi~~~~s~nV~I~n~~i~~g----------dD~i~~~~~s~ni~i~n~~~~ 235 (392)
++.+..++||.|+|++|..+.. ..+.|+|.+.++++|.|++|.+..+ |..+.++.++.++++++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3444446677777777765432 1357999999999999999999986 455677777899999999997
Q ss_pred CC-ceeEEEecCCCCCCCcEEEEEEEeeEEeCC
Q 041973 236 PG-HGVSIGSLGWGVNEDGVENVTLTNSRFTGS 267 (392)
Q Consensus 236 ~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 267 (392)
.- .+.-+|+..... .....+|++.+|.+.++
T Consensus 113 ~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 113 NHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred cCCEEEEEccCCCcc-ccccceEEEECcEEcCc
Confidence 53 367776632111 11245799999998775
No 46
>PLN02665 pectinesterase family protein
Probab=98.24 E-value=0.00054 Score=66.11 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-..||+||+++ .+.. -.+++|.||+|. ..+.++.. |.+++|.++|
T Consensus 79 df~TIq~AIdai-P~~~~~r~vI~Ik~GvY~-EkV~Ip~~-kp~Itl~G~~ 126 (366)
T PLN02665 79 DFKTITDAIKSI-PAGNTQRVIIDIGPGEYN-EKITIDRS-KPFVTLYGSP 126 (366)
T ss_pred CccCHHHHHhhC-cccCCceEEEEEeCcEEE-EEEEecCC-CCEEEEEecC
Confidence 466799999975 4322 236789999998 55666422 5688888765
No 47
>PLN02304 probable pectinesterase
Probab=98.20 E-value=0.00063 Score=65.66 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHhcccC--CCcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSV--KASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~--~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|=.-||+||+++ .+. .-.+|+|.||+|. ..+.++.. |.+++|.++|
T Consensus 86 df~TIQ~AIdav-P~~~~~r~vI~Ik~GvY~-EkV~Ip~~-K~~Itl~G~g 133 (379)
T PLN02304 86 NFTTVQSAVDAV-GNFSQKRNVIWINSGIYY-EKVTVPKT-KPNITFQGQG 133 (379)
T ss_pred CccCHHHHHhhC-cccCCCcEEEEEeCeEeE-EEEEECCC-CCcEEEEecC
Confidence 355799999975 332 2346889999997 55666422 5789998876
No 48
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=98.15 E-value=0.00077 Score=68.05 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
+-.-||+||+++ .+.. --+|+|.||+|. ..+.++.. |.+++|.++|
T Consensus 229 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~itl~G~g 276 (530)
T PLN02933 229 NFTTINEAVSAA-PNSSETRFIIYIKGGEYF-ENVELPKK-KTMIMFIGDG 276 (530)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEcCceEE-EEEEecCC-CceEEEEEcC
Confidence 355799999965 3322 347999999998 56777533 5788888876
No 49
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.11 E-value=0.0005 Score=67.18 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=34.5
Q ss_pred CCCCcccHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 35 SDGETDSTQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 35 ~dg~tddt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
+||.. |-.-||+||+++..+.. -.+|+|.||+|. ..+.++.. |.+++|+++|
T Consensus 88 ~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip~~-kp~ItL~G~G 141 (422)
T PRK10531 88 GTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVPAA-APPITLYGTG 141 (422)
T ss_pred CCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeCCC-CceEEEEecC
Confidence 45532 45679999996532222 347889999997 55666422 5789998865
No 50
>PLN02671 pectinesterase
Probab=98.10 E-value=0.0016 Score=62.58 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++ .+.. -.+++|.||+|. ..+.++.. |.+++|.++|
T Consensus 70 df~TIQ~AIdav-P~~~~~~~~I~Ik~GvY~-EkV~I~~~-k~~Itl~G~g 117 (359)
T PLN02671 70 DSLTVQGAVDMV-PDYNSQRVKIYILPGIYR-EKVLVPKS-KPYISFIGNE 117 (359)
T ss_pred CccCHHHHHHhc-hhcCCccEEEEEeCceEE-EEEEECCC-CCeEEEEecC
Confidence 466799999975 3322 347999999997 55666322 5788887764
No 51
>PLN02916 pectinesterase family protein
Probab=98.07 E-value=0.0014 Score=65.75 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHhccc-----CCCcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSS-----VKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~-----~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++ .+ ..--+|+|.||+|. ..+.++.. |.+++|.++|
T Consensus 198 ~f~TIq~AI~a~-P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g 248 (502)
T PLN02916 198 THRTINQALAAL-SRMGKSRTNRVIIYVKAGVYN-EKVEIDRH-MKNVMFVGDG 248 (502)
T ss_pred CccCHHHHHHhc-ccccCCCCceEEEEEeCceee-EEEEecCC-CceEEEEecC
Confidence 355799999865 32 11247999999997 55666432 5688888876
No 52
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=98.03 E-value=0.0014 Score=67.18 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++ .+.. --+++|.||+|. ..+.++.. |.+++|.++|
T Consensus 270 ~f~TIq~Av~a~-p~~~~~r~vI~Ik~GvY~-E~V~i~~~-k~~i~l~G~g 317 (572)
T PLN02990 270 QYKTINEALNAV-PKANQKPFVIYIKQGVYN-EKVDVTKK-MTHVTFIGDG 317 (572)
T ss_pred CCcCHHHHHhhC-cccCCceEEEEEeCceeE-EEEEecCC-CCcEEEEecC
Confidence 355699999975 3322 247999999997 45666432 5789998886
No 53
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=98.03 E-value=0.0014 Score=66.78 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|=.-||+||+++ .+.. --+|+|.+|+|. ..+.++.. |.+++|.++|
T Consensus 247 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~G~Y~-E~V~i~~~-k~~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVASA-PDNSKTRYVIYVKKGTYK-ENVEIGKK-KKNLMLVGDG 294 (548)
T ss_pred CcccHHHHHHhh-hhcCCceEEEEEeCceee-EEEEecCC-CceEEEEecC
Confidence 456799999875 3322 247999999997 45666432 5788888876
No 54
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=98.02 E-value=0.0011 Score=67.21 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHhcccC--CCcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSV--KASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~--~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
+=.-||+||+++ .+. +--+|+|.+|+|. ..+.+... |.+++|.++|
T Consensus 243 ~f~TIq~Av~a~-p~~~~~r~vI~Vk~GvY~-E~V~I~~~-k~~i~l~G~g 290 (537)
T PLN02506 243 HYRTITEAINEA-PNHSNRRYIIYVKKGVYK-ENIDMKKK-KTNIMLVGDG 290 (537)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEeCCeee-EEEeccCC-CceEEEEEcC
Confidence 355799999965 332 2347999999996 33445322 5788887775
No 55
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.99 E-value=0.0023 Score=64.65 Aligned_cols=46 Identities=28% Similarity=0.391 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHhcccC--CCcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSV--KASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~--~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|=.-||+||+++ .+. .--+++|.+|+|. ..+.++.. |.+++|.++|
T Consensus 217 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g 264 (520)
T PLN02201 217 NFTTIMDAVLAA-PDYSTKRYVIYIKKGVYL-ENVEIKKK-KWNIMMVGDG 264 (520)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEeCceeE-EEEEecCC-CceEEEEecC
Confidence 466799999865 332 2357999999997 55666432 5688888876
No 56
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.99 E-value=8.5e-05 Score=66.24 Aligned_cols=99 Identities=28% Similarity=0.374 Sum_probs=64.9
Q ss_pred eEEEe-ceeeEEEEeEEEEC-----------CCCCCCCCceeeeceecEEEEceEEecC---------CceEEeCCCcee
Q 041973 168 HLAIN-SCKNVIVRNVKLIA-----------PDESPNTDGIHIQSSTGVKITGSIMQTG---------DDCISIGPGTRN 226 (392)
Q Consensus 168 ~i~~~-~~~~v~i~~~~i~~-----------~~~~~n~DGi~~~~s~nV~I~n~~i~~g---------dD~i~~~~~s~n 226 (392)
++.+. .++||.|+|++|.. ..+....|+|.+..+++|.|++|.+..+ |..+.++.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~ 117 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDN 117 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEE
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCce
Confidence 44444 66677777777765 1123457999999999999999999876 445788777899
Q ss_pred EEEEeeeecCC-ceeEEEecCCCCCCCcEEEEEEEeeEEeCC
Q 041973 227 LYMSSIKCGPG-HGVSIGSLGWGVNEDGVENVTLTNSRFTGS 267 (392)
Q Consensus 227 i~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 267 (392)
|+|++|.|... .+.-+|+......... ..+++.+|.+.++
T Consensus 118 vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 118 VTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred EEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 99999999754 3455666422222334 8999999998765
No 57
>smart00656 Amb_all Amb_all domain.
Probab=97.99 E-value=0.00032 Score=62.00 Aligned_cols=119 Identities=22% Similarity=0.251 Sum_probs=79.3
Q ss_pred eEEEEecCcEEEEeeEEeccc------cceEEEeceeeEEEEeEEEECCC-C---CCCCCce-eee-ceecEEEEceEEe
Q 041973 145 SITFDWASNVMISGLTSINSQ------LIHLAINSCKNVIVRNVKLIAPD-E---SPNTDGI-HIQ-SSTGVKITGSIMQ 212 (392)
Q Consensus 145 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~~v~i~~~~i~~~~-~---~~n~DGi-~~~-~s~nV~I~n~~i~ 212 (392)
.|.+..++||.|+++++++.. .++|.+..+++|-|++|++.... . ....||. ++. .+.+|+|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 356666778888888887643 35788888888888888887541 0 1113554 333 4789999999998
Q ss_pred cCCceEEeCCCc-------eeEEEEeeeecCCc--eeEEEecCCCCCCCcEEEEEEEeeEEeCCc-ceEEE
Q 041973 213 TGDDCISIGPGT-------RNLYMSSIKCGPGH--GVSIGSLGWGVNEDGVENVTLTNSRFTGSD-NGVRI 273 (392)
Q Consensus 213 ~gdD~i~~~~~s-------~ni~i~n~~~~~~~--gi~igs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i 273 (392)
...-+..+.++. .+|++.+|++.+.. .-.+. .+ .+++-|+.+.+.. +++.+
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~g--~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------FG--YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------CC--EEEEEeeEEeCcccEeEec
Confidence 766666666542 26999999986532 22221 11 6888899988874 45444
No 58
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.98 E-value=0.002 Score=66.33 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=78.2
Q ss_pred cHHHHHHHHHHhcccC--CCcEEEEcCceEEEEEEEEecCCCccEEEEEce---EEEecCccccccCcccEEEEEeeeEE
Q 041973 41 STQAFLKAWAAACSSV--KASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG---TIVAPTDYHVIGKTGNWILFVQVDRV 115 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~--~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G---~l~~~~~~~~~~~~~~li~~~~~~nv 115 (392)
|-.-||+||+++ .+. .--+++|.+|+|. ..+.++.. |.+++|.++| ++.. .. .+.
T Consensus 296 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g~~~TiIt---------------~~--~~~ 355 (596)
T PLN02745 296 NFTTISDALAAM-PAKYEGRYVIYVKQGIYD-ETVTVDKK-MVNVTMYGDGSQKTIVT---------------GN--KNF 355 (596)
T ss_pred CcccHHHHHHhc-cccCCceEEEEEeCCeeE-EEEEEcCC-CceEEEEecCCCceEEE---------------EC--Ccc
Confidence 456799999865 332 2347899999997 44666432 5689998876 2211 10 000
Q ss_pred EEEc-cEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCCC
Q 041973 116 SVIG-GTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPDE 189 (392)
Q Consensus 116 ~I~G-g~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~~ 189 (392)
..| ++. + ..-.....+++..++++|.|+.. ..+.+. .++...+.+|+|.+.++
T Consensus 356 -~~g~~T~-------------------~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD 414 (596)
T PLN02745 356 -ADGVRTF-------------------R-TATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD 414 (596)
T ss_pred -cCCCcce-------------------e-eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc
Confidence 001 111 1 12223366888889999888642 223222 45666666666666544
Q ss_pred CCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeec
Q 041973 190 SPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCG 235 (392)
Q Consensus 190 ~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~ 235 (392)
... .. ..+-.+++|+|...=|-|. |.....++||.+.
T Consensus 415 TLy-----~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~ 451 (596)
T PLN02745 415 TLY-----AQ-THRQFYRSCVITGTIDFIF---GDAAAIFQNCLIF 451 (596)
T ss_pred ccc-----cC-CCcEEEEeeEEEeeccEEe---cceeEEEEecEEE
Confidence 221 11 1235566666665444331 1235666666553
No 59
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.95 E-value=0.0015 Score=61.88 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 40 DSTQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 40 ddt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
-|=.-||+||+++ .+.. .-+|+|.||+|. ..+.++.. |.+++|.++|
T Consensus 10 gdf~TIq~Aida~-p~~~~~~~~I~I~~G~Y~-E~V~i~~~-k~~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAA-PDNNTSRYTIFIKPGTYR-EKVTIPRS-KPNVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS--SSSSS-EEEEE-SEEEE---EEE-ST-STTEEEEES-
T ss_pred CCccCHHHHHHhc-hhcCCceEEEEEeCeeEc-cccEeccc-cceEEEEecC
Confidence 3455699999975 4322 347999999997 55677532 4688888875
No 60
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.94 E-value=0.0023 Score=65.18 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|=.-||+||+++ .+.. -.+++|.+|+|. ..+.++.. |.+++|.++|
T Consensus 241 ~f~TIq~Ai~a~-p~~~~~r~vI~Ik~GvY~-E~V~i~~~-k~~i~l~G~g 288 (541)
T PLN02416 241 NFSTITDAINFA-PNNSNDRIIIYVREGVYE-ENVEIPIY-KTNIVLIGDG 288 (541)
T ss_pred CccCHHHHHHhh-hhcCCceEEEEEeCceeE-EEEecCCC-CccEEEEecC
Confidence 456799999865 3322 236889999996 45666322 5788888876
No 61
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.94 E-value=0.0042 Score=62.16 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
+-.-||+||+++ .+.. --+++|.+|+|. ..+.++.. |.+++|.++|
T Consensus 208 ~f~TIq~AI~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~nItliGdg 255 (509)
T PLN02488 208 KYNTVNAAIAAA-PEHSRKRFVIYIKTGVYD-EIVRIGST-KPNLTLIGDG 255 (509)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEeCCeeE-EEEEecCC-CccEEEEecC
Confidence 455699999865 3322 347999999997 45666422 5789998876
No 62
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.91 E-value=0.003 Score=64.78 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcccC--CCcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 42 TQAFLKAWAAACSSV--KASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 42 t~aiq~Ai~~a~~~~--~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
-.-||+||+++ .+. .--+|+|.||+|. ..+.++.. |.+++|.++|
T Consensus 270 f~tI~~Av~a~-p~~~~~~~vI~ik~GvY~-E~V~i~~~-k~~i~~~G~g 316 (565)
T PLN02468 270 YKTISEALKDV-PEKSEKRTIIYVKKGVYF-ENVRVEKK-KWNVVMVGDG 316 (565)
T ss_pred ccCHHHHHHhc-hhcCCCcEEEEEeCCceE-EEEEecCC-CCeEEEEecC
Confidence 46799999875 332 2348999999997 45666433 5688888876
No 63
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.90 E-value=0.0043 Score=63.83 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++ .+.. --+|+|.+|+|.=..+.++.. |.|++|.++|
T Consensus 283 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~ni~l~G~g 331 (587)
T PLN02484 283 TFKTISEAIKKA-PEHSSRRTIIYVKAGRYEENNLKVGRK-KTNLMFIGDG 331 (587)
T ss_pred CcccHHHHHHhc-cccCCCcEEEEEeCCEEEEEEEEECCC-CceEEEEecC
Confidence 355799999975 3322 347899999998545767433 5788888876
No 64
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.89 E-value=0.0038 Score=64.31 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++ .+.. --+|+|.+|+|. ..+.+... |.+++|.++|
T Consensus 286 ~f~TI~~Av~a~-p~~~~~r~vI~ik~GvY~-E~V~i~~~-k~ni~l~Gdg 333 (587)
T PLN02313 286 DFTTVAAAVAAA-PEKSNKRFVIHIKAGVYR-ENVEVTKK-KKNIMFLGDG 333 (587)
T ss_pred CCccHHHHHHhc-cccCCceEEEEEeCceeE-EEEEeCCC-CCeEEEEecC
Confidence 456799999875 3322 248999999997 44555432 5788888876
No 65
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.88 E-value=0.0025 Score=66.13 Aligned_cols=177 Identities=11% Similarity=0.086 Sum_probs=95.3
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce---EEEecCccccccCcccEEEEEeeeEE
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG---TIVAPTDYHVIGKTGNWILFVQVDRV 115 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G---~l~~~~~~~~~~~~~~li~~~~~~nv 115 (392)
|-.-||+||+++ .+.. --+|+|.+|+|. ..+.+... |.+++|.++| ++.. .. .+.
T Consensus 261 ~f~TIq~Av~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~Gdg~~~TiIt---------------~~--~~~ 320 (670)
T PLN02217 261 QYKTINEALNFV-PKKKNTTFVVHIKAGIYK-EYVQVNRS-MTHLVFIGDGPDKTVIS---------------GS--KSY 320 (670)
T ss_pred CccCHHHHHHhc-cccCCceEEEEEeCCceE-EEEEEcCC-CCcEEEEecCCCCeEEE---------------cC--Ccc
Confidence 456799999975 3322 247899999996 35666433 5688888776 2211 00 000
Q ss_pred EEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCCCC
Q 041973 116 SVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPDES 190 (392)
Q Consensus 116 ~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~~~ 190 (392)
-||.+ ..+...+ ....+++..++++|+|... +.+.+. ..+...+.+|+|...++.
T Consensus 321 ------~dg~~-------------T~~SAT~-~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDT 380 (670)
T PLN02217 321 ------KDGIT-------------TYKTATV-AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDT 380 (670)
T ss_pred ------CCCCC-------------ccceEEE-EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccch
Confidence 00100 0111223 3356888999999998753 233333 466777777777765543
Q ss_pred CCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCC-----ceeEEEecCCCCCCCcEEEEEEEeeEEe
Q 041973 191 PNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPG-----HGVSIGSLGWGVNEDGVENVTLTNSRFT 265 (392)
Q Consensus 191 ~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~~~ni~i~n~~~~ 265 (392)
+... ..+-.+++|+|...=|-|. |.....++||.+..- ..-.|-..++. ....-..+.|.||++.
T Consensus 381 -----Ly~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 381 -----LYAH-SHRQFYRDCTISGTIDFLF---GDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIV 450 (670)
T ss_pred -----hccC-CCcEEEEeCEEEEeccEEe---cCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEe
Confidence 2222 2345677777776545442 223677777776421 11112112211 1123346777777777
Q ss_pred CC
Q 041973 266 GS 267 (392)
Q Consensus 266 ~~ 267 (392)
..
T Consensus 451 ~~ 452 (670)
T PLN02217 451 GE 452 (670)
T ss_pred cC
Confidence 65
No 66
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.88 E-value=0.0041 Score=63.73 Aligned_cols=145 Identities=18% Similarity=0.113 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHhcccC-----CCcEEEEcCceEEEEEEEEecCCCccEEEEEce---EEEecCccccccCcccEEEEEee
Q 041973 41 STQAFLKAWAAACSSV-----KASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG---TIVAPTDYHVIGKTGNWILFVQV 112 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~-----~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G---~l~~~~~~~~~~~~~~li~~~~~ 112 (392)
|=.-||+||+++ .+. +--+++|.+|+|. ..+.++.. |.+++|.++| ++. ...
T Consensus 261 ~f~TIq~Av~a~-p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~-k~~i~l~G~g~~~TiI---------------t~~-- 320 (566)
T PLN02713 261 NFTTINDAVAAA-PNNTDGSNGYFVIYVTAGVYE-EYVSIPKN-KKYLMMIGDGINQTVI---------------TGN-- 320 (566)
T ss_pred CCCCHHHHHHhh-hcccCCCCceEEEEEcCcEEE-EEEEecCC-CceEEEEecCCCCcEE---------------EcC--
Confidence 355799999865 332 1247999999997 55666432 5788888876 221 111
Q ss_pred eEEEEEc-cEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEEC
Q 041973 113 DRVSVIG-GTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIA 186 (392)
Q Consensus 113 ~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~ 186 (392)
.+. ..| ++. +...+. ...+++..++++|.|... ..+.+. ..+...+.+|+|.+
T Consensus 321 ~~~-~~g~~T~-------------------~SaT~~-v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G 379 (566)
T PLN02713 321 RSV-VDGWTTF-------------------NSATFA-VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA 379 (566)
T ss_pred Ccc-cCCCccc-------------------cceeEE-EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc
Confidence 000 011 111 112333 356889999999998642 223332 45667777777776
Q ss_pred CCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeec
Q 041973 187 PDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCG 235 (392)
Q Consensus 187 ~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~ 235 (392)
.++. +.... .+-.+++|+|...=|-|. |...+.++||.+.
T Consensus 380 ~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~ 419 (566)
T PLN02713 380 YQDT-----LYTHS-LRQFYRECDIYGTVDFIF---GNAAVVFQNCNLY 419 (566)
T ss_pred CCcc-----eEECC-CCEEEEeeEEecccceec---ccceEEEeccEEE
Confidence 5532 22222 345677777766545442 2346677777664
No 67
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.86 E-value=0.0041 Score=63.37 Aligned_cols=146 Identities=16% Similarity=0.092 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhcccCC-----CcEEEEcCceEEEEEEEEecCCCccEEEEEce---EEEecCccccccCcccEEEEEee
Q 041973 41 STQAFLKAWAAACSSVK-----ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG---TIVAPTDYHVIGKTGNWILFVQV 112 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~-----g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G---~l~~~~~~~~~~~~~~li~~~~~ 112 (392)
+-.-||+||+++ .+.. --+++|.+|+|. ..+.++.. |.+++|.++| ++. ...
T Consensus 234 ~f~TI~~Av~a~-p~~~~~~~~r~vI~vk~G~Y~-E~V~i~~~-k~~i~l~G~g~~~tiI---------------t~~-- 293 (538)
T PLN03043 234 NFTTITDAIAAA-PNNSKPEDGYFVIYAREGYYE-EYVVVPKN-KKNIMLIGDGINKTII---------------TGN-- 293 (538)
T ss_pred CCcCHHHHHHhc-cccCCCCcceEEEEEcCeeeE-EEEEeCCC-CCcEEEEecCCCCeEE---------------EeC--
Confidence 456799999865 4322 137999999997 45666422 5788888876 221 111
Q ss_pred eEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECC
Q 041973 113 DRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAP 187 (392)
Q Consensus 113 ~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~ 187 (392)
.++ .|| |. ..+ ..-.....+++..++++|+|+.. ..+.+. ..+...+.+|+|...
T Consensus 294 ~~~------~dg-----~~--------T~~-saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gy 353 (538)
T PLN03043 294 HSV------VDG-----WT--------TFN-SSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGY 353 (538)
T ss_pred Ccc------CCC-----Cc--------ccc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEecc
Confidence 000 011 10 011 12233356888999999998643 223232 355566666666665
Q ss_pred CCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeec
Q 041973 188 DESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCG 235 (392)
Q Consensus 188 ~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~ 235 (392)
++... .. +.+-..++|+|...=|-|.= .....++||.+.
T Consensus 354 QDTLy-----~~-~~rq~y~~c~I~GtVDFIFG---~a~avfq~c~i~ 392 (538)
T PLN03043 354 QDTLY-----VH-SLRQFYRECDIYGTVDFIFG---NAAAIFQNCNLY 392 (538)
T ss_pred Ccccc-----cC-CCcEEEEeeEEeeccceEee---cceeeeeccEEE
Confidence 44221 11 12345666666654444421 235566666553
No 68
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.85 E-value=0.0016 Score=58.73 Aligned_cols=123 Identities=28% Similarity=0.464 Sum_probs=81.0
Q ss_pred EEEEeeEEeccc------cceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeE
Q 041973 154 VMISGLTSINSQ------LIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNL 227 (392)
Q Consensus 154 v~I~~v~i~n~~------~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni 227 (392)
+.|+++++.... ..++.+..++++.|+++++.+.. .+|+.+..+....+.+.... ..+.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~----~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSG----GDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-S----S-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccC----ccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 347777776432 24688888999999999998753 47788875555444444332 123333335677
Q ss_pred EEEeeeecCC-ceeEEEecCCCCCCCcEEEEEEEeeEEeC-CcceEEEEeecCCCCceEEeEEEEEEEEecCceeE
Q 041973 228 YMSSIKCGPG-HGVSIGSLGWGVNEDGVENVTLTNSRFTG-SDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPI 301 (392)
Q Consensus 228 ~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~-~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i 301 (392)
.+.|+.+..+ .|+..++ ++++++||.+.+ ...|+.+... .+++++|++++++..++
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~--------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG--------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC--------SEEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC--------eEEEEEeEEEECCccCc
Confidence 7788877654 3543332 799999999998 6788888653 12888888888887765
No 69
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.80 E-value=0.0022 Score=65.25 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHhccc----CCCcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSS----VKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~----~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++ .+ ..--+++|.+|+|. ..+.++.. |.+++|.++|
T Consensus 234 ~f~TIq~Ai~a~-p~~~~~~~r~vI~Ik~G~Y~-E~V~i~~~-k~~i~l~G~g 283 (539)
T PLN02995 234 HFNTVQAAIDVA-GRRKVTSGRFVIYVKRGIYQ-ENINVRLN-NDDIMLVGDG 283 (539)
T ss_pred CccCHHHHHHhc-ccccCCCceEEEEEeCCEeE-EEEEecCC-CCcEEEEEcC
Confidence 456799999975 32 12357889999997 34555422 5789998886
No 70
>PLN02197 pectinesterase
Probab=97.70 E-value=0.0047 Score=63.40 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEce
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKG 89 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G 89 (392)
|-.-||+||+++ .+.. --+++|.+|+|. ..+.++.. |.+++|.++|
T Consensus 286 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~ni~l~G~g 333 (588)
T PLN02197 286 QFKTISQAVMAC-PDKNPGRCIIHIKAGIYN-EQVTIPKK-KNNIFMFGDG 333 (588)
T ss_pred CcCCHHHHHHhc-cccCCceEEEEEeCceEE-EEEEccCC-CceEEEEEcC
Confidence 455799999865 3322 236899999997 45666432 5788888876
No 71
>PLN02314 pectinesterase
Probab=97.66 E-value=0.0049 Score=63.55 Aligned_cols=149 Identities=14% Similarity=0.103 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHhcccCC--CcEEEEcCceEEEEEEEEecCCCccEEEEEceEEEecCccccccCcccEEEEEeeeEEEEE
Q 041973 41 STQAFLKAWAAACSSVK--ASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVI 118 (392)
Q Consensus 41 dt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I~ 118 (392)
|-.-||+||+++ .+.. --+++|.+|+|. ..+.+... |.|++|.++|.- ...|... .+.
T Consensus 289 ~f~TI~~Av~a~-p~~~~~r~vI~ik~G~Y~-E~V~i~~~-k~~i~l~G~g~~------------~tiIt~~--~~~--- 348 (586)
T PLN02314 289 DVKTINEAVASI-PKKSKSRFVIYVKEGTYV-ENVLLDKS-KWNVMIYGDGKD------------KTIISGS--LNF--- 348 (586)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEcCceEE-EEEEecCC-CceEEEEecCCC------------CcEEEec--CCc---
Confidence 355699999965 3322 237899999997 45656432 578888887610 0011110 000
Q ss_pred ccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCCCCCCC
Q 041973 119 GGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPDESPNT 193 (392)
Q Consensus 119 Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~~~~n~ 193 (392)
.||.. . .+ ..-.....+++..++++|.|+.. ..+.+. ..+...+.+|+|...++.
T Consensus 349 ---~~g~~-t------------~~-saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDT--- 408 (586)
T PLN02314 349 ---VDGTP-T------------FS-TATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDT--- 408 (586)
T ss_pred ---CCCCC-c------------cc-eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccch---
Confidence 01100 0 01 12223356788889999988642 223332 455666666666655432
Q ss_pred CceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeec
Q 041973 194 DGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCG 235 (392)
Q Consensus 194 DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~ 235 (392)
+... +..-..++|+|...=|-|. |.....++||.+.
T Consensus 409 --Ly~~-~~rq~y~~C~I~GtvDFIF---G~a~avf~~c~i~ 444 (586)
T PLN02314 409 --LYAH-SNRQFYRDCDITGTIDFIF---GNAAVVFQNCNIQ 444 (586)
T ss_pred --heeC-CCCEEEEeeEEEeccceec---cCceeeeeccEEE
Confidence 2211 1234566666665444432 1235666666654
No 72
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.35 E-value=0.0044 Score=55.28 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=65.3
Q ss_pred EecCcEEEEeeEEec---------------cccceEEEeceeeEEEEeEEEECCCC---CCCCCc-eeee-ceecEEEEc
Q 041973 149 DWASNVMISGLTSIN---------------SQLIHLAINSCKNVIVRNVKLIAPDE---SPNTDG-IHIQ-SSTGVKITG 208 (392)
Q Consensus 149 ~~~~nv~I~~v~i~n---------------~~~~~i~~~~~~~v~i~~~~i~~~~~---~~n~DG-i~~~-~s~nV~I~n 208 (392)
..++||.|+++++.. ...+++.+..+++|-|++|++....+ ....|| +++. .+++|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 367777777777776 23456888888888888888865411 111355 5654 478899999
Q ss_pred eEEecCCceEEeCCC-------ceeEEEEeeeecCCc--eeEEEecCCCCCCCcEEEEEEEeeEEeC-CcceEEEE
Q 041973 209 SIMQTGDDCISIGPG-------TRNLYMSSIKCGPGH--GVSIGSLGWGVNEDGVENVTLTNSRFTG-SDNGVRIK 274 (392)
Q Consensus 209 ~~i~~gdD~i~~~~~-------s~ni~i~n~~~~~~~--gi~igs~g~~~~~~~~~ni~i~n~~~~~-~~~gi~i~ 274 (392)
|.|...+.+..+++. ..++++-+|.+.+.. .-.+ ..-.+++-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~----------r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV----------RFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE----------CSCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc----------cccEEEEEEeeeECCCCEEEEcc
Confidence 988764333333321 368888888875422 1111 11247777776655 34566554
No 73
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.30 E-value=0.078 Score=51.30 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=70.8
Q ss_pred HHHHHHHhcccCCCcEEEEcCc-eEEEE-EEEEecCCCccEEEEEce-EEEecCccccccCcccEEEEEeeeEEEEEccE
Q 041973 45 FLKAWAAACSSVKASTIYVPTG-RYLIK-NIVFRGPCKNKIAIQIKG-TIVAPTDYHVIGKTGNWILFVQVDRVSVIGGT 121 (392)
Q Consensus 45 iq~Ai~~a~~~~~g~~v~ip~G-~Y~~~-~l~l~~~~~s~v~l~~~G-~l~~~~~~~~~~~~~~li~~~~~~nv~I~Gg~ 121 (392)
+.+||+. ..+|.+-|| +|.+. ++.| ++...+.+.| +++....... .|... -
T Consensus 57 le~~I~~------haKVaL~Pg~~Y~i~~~V~I----~~~cYIiGnGA~V~v~~~~~~------~f~v~--------~-- 110 (386)
T PF01696_consen 57 LEEAIRQ------HAKVALRPGAVYVIRKPVNI----RSCCYIIGNGATVRVNGPDRV------AFRVC--------M-- 110 (386)
T ss_pred HHHHHHh------cCEEEeCCCCEEEEeeeEEe----cceEEEECCCEEEEEeCCCCc------eEEEE--------c--
Confidence 5566653 236888887 69986 4777 3778888877 5544211110 01111 0
Q ss_pred EeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccc-cceEEEeceeeEEEEeEEEECCCCCCCCCceeeec
Q 041973 122 LDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQ-LIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQS 200 (392)
Q Consensus 122 idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~-~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~ 200 (392)
....|. +.+-.++++.++.+...+ ..++-+....++++.+|.+.+.. |..+..
T Consensus 111 -----------------~~~~P~---V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~------g~cl~~ 164 (386)
T PF01696_consen 111 -----------------QSMGPG---VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH------GTCLES 164 (386)
T ss_pred -----------------CCCCCe---EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc------ceeEEE
Confidence 001121 223345566666665544 44455555556666666665542 233333
Q ss_pred eecEEEEceEEecCCceEEeCCCceeEEEEeeeecC
Q 041973 201 STGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGP 236 (392)
Q Consensus 201 s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~ 236 (392)
.....|+.|+|...--++.-.+ ...+.|++|.|..
T Consensus 165 ~~~~~VrGC~F~~C~~gi~~~~-~~~lsVk~C~Fek 199 (386)
T PF01696_consen 165 WAGGEVRGCTFYGCWKGIVSRG-KSKLSVKKCVFEK 199 (386)
T ss_pred cCCcEEeeeEEEEEEEEeecCC-cceEEeeheeeeh
Confidence 3456666666654333332222 3455666666554
No 74
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0057 Score=57.30 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=78.5
Q ss_pred EEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEEC
Q 041973 107 ILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIA 186 (392)
Q Consensus 107 i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~ 186 (392)
|...++.++.|+|-+|.|... .....|...|.++++++..|.+-.+.- ..++|..+.++...+++.+++.
T Consensus 123 i~l~~s~d~~i~~n~i~G~~~---------~r~~~rGnGI~vyNa~~a~V~~ndisy-~rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLAD---------LRVAERGNGIYVYNAPGALVVGNDISY-GRDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred EEEeccCceEEEeeEEeeccc---------cchhhccCceEEEcCCCcEEEcCcccc-ccceEEEcccccceecccchhh
Confidence 445556777777755555332 223445567899999998888877755 3467888888888888888865
Q ss_pred CCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecC
Q 041973 187 PDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGP 236 (392)
Q Consensus 187 ~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~ 236 (392)
.- -|.|...+.+..++++..+...-+.++-- ++.++|+|++..+
T Consensus 193 ~R-----ygvHyM~t~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nrS~G 236 (408)
T COG3420 193 LR-----YGVHYMYTNDSRISDNSSRDNRVGYALMY-SDRLKVSDNRSSG 236 (408)
T ss_pred ee-----eeEEEEeccCcEeecccccCCcceEEEEE-eccEEEEcCcccC
Confidence 43 36777777778887777776666666654 6778888877654
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.056 Score=50.50 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHhcccCCC--cEEEEcCceEEEEEEEEecCCCcc--EEEEEce
Q 041973 40 DSTQAFLKAWAAACSSVKA--STIYVPTGRYLIKNIVFRGPCKNK--IAIQIKG 89 (392)
Q Consensus 40 ddt~aiq~Ai~~a~~~~~g--~~v~ip~G~Y~~~~l~l~~~~~s~--v~l~~~G 89 (392)
++-..||+|+++|..+.+. ..+.+.+|.|. +.+.++ ++. ++|++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp---~~~~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVP---AAPGGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEec---CCCCceeEEecC
Confidence 6777899999987544442 34556999996 446665 344 8888764
No 76
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.10 E-value=0.00049 Score=47.49 Aligned_cols=37 Identities=32% Similarity=0.374 Sum_probs=23.1
Q ss_pred ccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCc-eEEEEEE
Q 041973 33 AKSDGETDSTQAFLKAWAAACSSVKASTIYVPTG-RYLIKNI 73 (392)
Q Consensus 33 a~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~l 73 (392)
|+|||+||||+||.++|++. +.| .++=-.| ||+++.|
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g-~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVG-RKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TT-S-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhcc---CCC-eEEecCCceEEEeeC
Confidence 68999999999999999854 444 4444555 8988775
No 77
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.74 E-value=2.2 Score=41.55 Aligned_cols=86 Identities=13% Similarity=0.204 Sum_probs=63.7
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEec-CCceEEeCCCceeEEEEeeeecCCc-eeEEEecCCC
Q 041973 171 INSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQT-GDDCISIGPGTRNLYMSSIKCGPGH-GVSIGSLGWG 248 (392)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gdD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~ 248 (392)
+..-.+|++.|+++...+ ...|+-+....++++.+|.|.+ .-.|+.... ...|++|+|.+.+ |+.
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~------- 183 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIV------- 183 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEee-------
Confidence 445568999999998654 2357888888999999999987 334555554 6789999986542 443
Q ss_pred CCCCcEEEEEEEeeEEeCCcceE
Q 041973 249 VNEDGVENVTLTNSRFTGSDNGV 271 (392)
Q Consensus 249 ~~~~~~~ni~i~n~~~~~~~~gi 271 (392)
..+...+.+++|.|+.+.-|+
T Consensus 184 --~~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 184 --SRGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred --cCCcceEEeeheeeeheEEEE
Confidence 234578899999999986666
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.06 E-value=2.4 Score=37.90 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=35.3
Q ss_pred CcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceeeecee-cEEEEceEEecCCceEEeCCCceeEEEE
Q 041973 152 SNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSST-GVKITGSIMQTGDDCISIGPGTRNLYMS 230 (392)
Q Consensus 152 ~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gdD~i~~~~~s~ni~i~ 230 (392)
+..+|+++.|-.....+||... +-+|+|+..+.-. -|.+.+.+.. .++|.+.-.++.+|-+.=..+...+.|+
T Consensus 61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedVc----EDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~ 134 (215)
T PF03211_consen 61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDVC----EDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIK 134 (215)
T ss_dssp TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-S----SESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEE
T ss_pred CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecccc----eeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEE
Confidence 4566666666444445555554 4455555554432 2445555444 4555555555544444333333445555
Q ss_pred ee
Q 041973 231 SI 232 (392)
Q Consensus 231 n~ 232 (392)
|.
T Consensus 135 nF 136 (215)
T PF03211_consen 135 NF 136 (215)
T ss_dssp EE
T ss_pred eE
Confidence 53
No 79
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=94.87 E-value=1.4 Score=39.48 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=75.5
Q ss_pred eeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEec-CCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCc
Q 041973 175 KNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQT-GDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDG 253 (392)
Q Consensus 175 ~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~ 253 (392)
...+++|+.|-.+ ..||||..+ +-+|+|+++.. +.|++++++.+..++|.+.-..+...=.|--. +
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N-------g 127 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHN-------G 127 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--------S
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEec-------C
Confidence 4678999999543 258999998 78899999987 89999999865577777665544333222111 1
Q ss_pred EEEEEEEeeEEeCCcceEEEEeecC--CCCceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEe
Q 041973 254 VENVTLTNSRFTGSDNGVRIKSWAR--PSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRN 329 (392)
Q Consensus 254 ~~ni~i~n~~~~~~~~gi~i~~~~~--~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~n 329 (392)
--.++|+|-+..+ .|--.++-.. ...+.=+++.+++........-+.|-.+|.. ..+|++++++.
T Consensus 128 ~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD---------~ati~~~~~~~ 194 (215)
T PF03211_consen 128 GGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD---------TATISNSCIKG 194 (215)
T ss_dssp SEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT---------TEEEEEEEEEE
T ss_pred ceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC---------eEEEEEEEecC
Confidence 1357777755553 3444443211 1113446677776655432223334444532 34677776665
No 80
>PLN02480 Probable pectinesterase
Probab=94.53 E-value=1.9 Score=41.58 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=88.0
Q ss_pred ceeeEEEEeEEEECCCC-----CCCCCceee-eceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecC
Q 041973 173 SCKNVIVRNVKLIAPDE-----SPNTDGIHI-QSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLG 246 (392)
Q Consensus 173 ~~~~v~i~~~~i~~~~~-----~~n~DGi~~-~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g 246 (392)
...+++++|++|.+... .....++-+ ..++++.++||.|....|-+.... ..-.++||++.+.-++=+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45789999999987631 112355665 357899999999999889886554 36789999998766666654
Q ss_pred CCCCCCcEEEEEEEeeEEeCCcc-----eEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcce
Q 041973 247 WGVNEDGVENVTLTNSRFTGSDN-----GVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVK 321 (392)
Q Consensus 247 ~~~~~~~~~ni~i~n~~~~~~~~-----gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 321 (392)
-...|++|++..... .=.|....... ..-....|.||++.+.. ..|.++++. +
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~-~~~~GfvF~~C~i~g~g------~~yLGRPW~-------~ 263 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGSITAHNRES-EDNSGFVFIKGKVYGIG------EVYLGRAKG-------A 263 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceEEEcCCCCC-CCCCEEEEECCEEcccC------ceeeecCCC-------C
Confidence 377899999886421 11244332111 33456899999997642 123333322 3
Q ss_pred EEeEEEEeEEEe
Q 041973 322 ISQVTYRNIQGT 333 (392)
Q Consensus 322 i~nI~~~ni~~~ 333 (392)
...+.|.+-.+.
T Consensus 264 ya~vVf~~t~l~ 275 (343)
T PLN02480 264 YSRVIFAKTYLS 275 (343)
T ss_pred cceEEEEecccC
Confidence 566677766654
No 81
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=94.22 E-value=1.1 Score=45.67 Aligned_cols=40 Identities=5% Similarity=-0.065 Sum_probs=19.3
Q ss_pred ecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEE
Q 041973 202 TGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIG 243 (392)
Q Consensus 202 ~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~ig 243 (392)
++..+.+|.|....|-+..+.+ .-.+++|++.+.-.+-+|
T Consensus 298 D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG 337 (497)
T PLN02698 298 DHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFG 337 (497)
T ss_pred CcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEec
Confidence 4555555555555555444431 235555555544444333
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.15 E-value=0.14 Score=33.42 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=16.3
Q ss_pred eeeeceecEEEEceEEecCCceEEeCCCceeEEEEeee
Q 041973 196 IHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIK 233 (392)
Q Consensus 196 i~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~ 233 (392)
|.+..+.+.+|+++.+....++|.+.. +.+.++++++
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~ 38 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNT 38 (44)
T ss_pred EEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCE
Confidence 444444444444444444444444443 2333333333
No 83
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=92.88 E-value=4.4 Score=40.13 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=64.9
Q ss_pred ceeeEEEEeEEEECCCC----CCCCCceeee-ceecEEEEceEEecCCceEEeCCC----------ceeEEEEeeeecCC
Q 041973 173 SCKNVIVRNVKLIAPDE----SPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGPG----------TRNLYMSSIKCGPG 237 (392)
Q Consensus 173 ~~~~v~i~~~~i~~~~~----~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~~----------s~ni~i~n~~~~~~ 237 (392)
..+++..+|++|.+... ..+...+-+. ..+.+.+.+|.|....|-+..... ...-.+++|++.+.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~ 283 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD 283 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec
Confidence 44555566666654321 0112223332 347788888888887777765321 22577888888776
Q ss_pred ceeEEEecCCCCCCCcEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEeEEEEEEEEecC
Q 041973 238 HGVSIGSLGWGVNEDGVENVTLTNSRFTGSDN----GVRIKSWARPSNSFVRNVLFQNIIMKNV 297 (392)
Q Consensus 238 ~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~ni~~~ni~~~~~ 297 (392)
-++-+|. -..+|++|++..... .-.|..- ......-..+.|.||++...
T Consensus 284 VDFIFG~----------g~AvFenC~I~s~~~~~~~~g~ITA~-~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 284 VDFVFGR----------GAVVFDNTEFRVVNSRTQQEAYVFAP-ATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred ccEEccC----------ceEEEEcCEEEEecCCCCCceEEEec-CCCCCCCCEEEEECCEEecC
Confidence 6666654 367788888876421 1223221 11223345688999998874
No 84
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=92.68 E-value=5.6 Score=38.93 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=18.1
Q ss_pred EEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEE
Q 041973 255 ENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIM 294 (392)
Q Consensus 255 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~ 294 (392)
.|=.|+|+...++ .|+.+.. .+.+++++||+.+++.-
T Consensus 311 tnHiidNi~~~~~-lGVG~~~--DG~~~yvsni~~~d~~g 347 (549)
T PF09251_consen 311 TNHIIDNILVRGS-LGVGIGM--DGKGGYVSNITVQDCAG 347 (549)
T ss_dssp ---EEEEEEEES--SSESCEE--ECCS-EEEEEEEES-SS
T ss_pred hhhhhhhhheecc-ceeeeee--cCCCceEeeEEeecccC
Confidence 4556666666665 3443332 23667777777777653
No 85
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=92.43 E-value=5.4 Score=36.63 Aligned_cols=105 Identities=21% Similarity=0.328 Sum_probs=64.1
Q ss_pred eEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEec-CCceEEeCCCceeEEEEeeeecCCceeEE-Eec
Q 041973 168 HLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQT-GDDCISIGPGTRNLYMSSIKCGPGHGVSI-GSL 245 (392)
Q Consensus 168 ~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gdD~i~~~~~s~ni~i~n~~~~~~~gi~i-gs~ 245 (392)
.+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.+ .. .|+.+ ++.
T Consensus 90 n~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~----------------------~GI~v~g~~ 145 (246)
T PF07602_consen 90 NVTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGR----------------------EGIFVTGTS 145 (246)
T ss_pred eEEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCcc----------------------ccEEEEeee
Confidence 3445556678888999988731 12335655554 55565555543 12 24433 221
Q ss_pred CCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEe
Q 041973 246 GWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQ 305 (392)
Q Consensus 246 g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~ 305 (392)
....+.+++|+++.+.....|+.+..... + +. ..++|..+++...++.+..
T Consensus 146 ----~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~-n~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 146 ----ANPGINGNVISGNSIYFNKTGISISDNAA---P-VE-NKIENNIIENNNIGIVAIG 196 (246)
T ss_pred ----cCCcccceEeecceEEecCcCeEEEcccC---C-cc-ceeeccEEEeCCcCeEeec
Confidence 13467889999999999889999975422 2 22 3457777777666776553
No 86
>PLN02197 pectinesterase
Probab=92.11 E-value=5.1 Score=41.56 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=9.9
Q ss_pred ecCcEEEEeeEEecc
Q 041973 150 WASNVMISGLTSINS 164 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~ 164 (392)
..+++..++++|.|+
T Consensus 362 ~~~~F~a~nitf~Nt 376 (588)
T PLN02197 362 ESEGFMAKWIGFKNT 376 (588)
T ss_pred ECCcEEEEEeEEEeC
Confidence 456667777777664
No 87
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.47 E-value=0.49 Score=30.74 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=30.0
Q ss_pred eEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEec
Q 041973 168 HLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQT 213 (392)
Q Consensus 168 ~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~ 213 (392)
+|.+..+.+.+|++.++... .+||++..+.+-+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~-----~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN-----SYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC-----CCEEEEEeCCCCEeECCEEEc
Confidence 35666777777888888753 368888888888888777764
No 88
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=86.95 E-value=19 Score=31.30 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=36.0
Q ss_pred ecEEEEceEEecC-CceEEeCC--------CceeEEEEeeeecCCc---e--eEEEecCCCCCCCcEEEEEEEeeEEeCC
Q 041973 202 TGVKITGSIMQTG-DDCISIGP--------GTRNLYMSSIKCGPGH---G--VSIGSLGWGVNEDGVENVTLTNSRFTGS 267 (392)
Q Consensus 202 ~nV~I~n~~i~~g-dD~i~~~~--------~s~ni~i~n~~~~~~~---g--i~igs~g~~~~~~~~~ni~i~n~~~~~~ 267 (392)
.+|.|.|+.|.+- --+|.+.. ..+||+|.++.|.... . ..-|-. ..++.|.+|||+.|.+.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv-----~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIV-----TSGFYNTLIENNVFDGV 76 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEE-----eccccccEEEeeeeccc
Confidence 3677777777652 22332221 2468888888876421 1 111221 24567888888888887
Q ss_pred cc
Q 041973 268 DN 269 (392)
Q Consensus 268 ~~ 269 (392)
.+
T Consensus 77 y~ 78 (198)
T PF08480_consen 77 YH 78 (198)
T ss_pred cc
Confidence 54
No 89
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=85.97 E-value=4.9 Score=37.33 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=11.6
Q ss_pred ceeEEEEeeeecCCceeEEE
Q 041973 224 TRNLYMSSIKCGPGHGVSIG 243 (392)
Q Consensus 224 s~ni~i~n~~~~~~~gi~ig 243 (392)
+.|..|.|..+.++.|+-||
T Consensus 300 cdnfvidni~mvnsagmlig 319 (464)
T PRK10123 300 CDNFVIDNIEMINSAGMLIG 319 (464)
T ss_pred ccceEEeccccccccccEEE
Confidence 55666666666665554443
No 90
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=84.52 E-value=28 Score=36.20 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=38.8
Q ss_pred ecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCc
Q 041973 150 WASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGT 224 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s 224 (392)
..+++..++++|+|+.. ..+.+. ..+...+.+|+|...++.... .. ..-..++|+|...=|-|. |.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~-----~~-~rq~y~~C~I~GtvDFIF---G~ 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYA-----HA-QRQFYRECNIYGTVDFIF---GN 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhcc-----CC-CceEEEeeEEecccceee---cc
Confidence 45677777777777532 222222 455566666666655432211 11 233456666655444332 12
Q ss_pred eeEEEEeeeec
Q 041973 225 RNLYMSSIKCG 235 (392)
Q Consensus 225 ~ni~i~n~~~~ 235 (392)
..+.++||.+.
T Consensus 414 a~avfq~c~i~ 424 (565)
T PLN02468 414 SAVVFQNCNIL 424 (565)
T ss_pred ceEEEeccEEE
Confidence 35556666553
No 91
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=84.42 E-value=15 Score=36.10 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=26.4
Q ss_pred eeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEee
Q 041973 225 RNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSW 276 (392)
Q Consensus 225 ~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~ 276 (392)
.|=.|+|.....+.|+.+|-.| ..+.++||++++|. ..|+.++.+
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~~----g~G~~~~~~ 355 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDCA----GAGIFIRGT 355 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-S----SESEEEECC
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeeccc----CCceEEeec
Confidence 4556677766677777776654 34568888888775 457777653
No 92
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=82.98 E-value=23 Score=36.64 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=30.6
Q ss_pred eecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEe
Q 041973 201 STGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFT 265 (392)
Q Consensus 201 s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~ 265 (392)
++.+.+.||.|....|-+..+++ .-.+++|++.+.-++-+|. -.++|+||++.
T Consensus 357 ~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~----------a~avfq~c~i~ 409 (553)
T PLN02708 357 SDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN----------SAAVFQDCAIL 409 (553)
T ss_pred CCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC----------ceEEEEccEEE
Confidence 35666666666666666555542 3456666666555555543 25666666665
No 93
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=82.57 E-value=6.2 Score=39.06 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=17.1
Q ss_pred ecEEEEceEEecCC---ceEEeCCCceeEEEEeeeecCCce-eEE
Q 041973 202 TGVKITGSIMQTGD---DCISIGPGTRNLYMSSIKCGPGHG-VSI 242 (392)
Q Consensus 202 ~nV~I~n~~i~~gd---D~i~~~~~s~ni~i~n~~~~~~~g-i~i 242 (392)
.+.+|+++.|...| .-|++|| ..-+|++++|..+.| +.+
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISvKS--~~N~ir~Ntf~es~G~ltl 241 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISVKS--SDNTIRNNTFRESQGSLTL 241 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEEES--BT-EEES-EEES-SSEEEE
T ss_pred cceeeecchhhhcCCceeEEEeec--CCceEeccEEEeccceEEE
Confidence 46667777666532 2366665 244556666655544 444
No 94
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=81.95 E-value=19 Score=37.98 Aligned_cols=114 Identities=9% Similarity=0.086 Sum_probs=79.8
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCC
Q 041973 173 SCKNVIVRNVKLIAPDESPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNE 251 (392)
Q Consensus 173 ~~~~v~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 251 (392)
..+++..+|++|.|.........+-+. .++...+.||.|....|-+..++ ..-.+++|++.+.-++-+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC-------
Confidence 467899999999876543334555554 46899999999999999887775 35689999998776766654
Q ss_pred CcEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEeEEEEEEEEecCc
Q 041973 252 DGVENVTLTNSRFTGSD----NGVRIKSWARPSNSFVRNVLFQNIIMKNVQ 298 (392)
Q Consensus 252 ~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~ 298 (392)
-..+|+||++.... ..-.|....+.....-..+.|.||++....
T Consensus 406 ---a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 406 ---AAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred ---ceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCc
Confidence 36889999987532 122343321112234567999999998753
No 95
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=80.83 E-value=30 Score=32.83 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=10.6
Q ss_pred ecCcEEEEeeEEeccc
Q 041973 150 WASNVMISGLTSINSQ 165 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~~ 165 (392)
..+++.+++++|.|+.
T Consensus 85 ~a~~f~~~nit~~Nt~ 100 (298)
T PF01095_consen 85 NADDFTAENITFENTA 100 (298)
T ss_dssp -STT-EEEEEEEEEHC
T ss_pred cccceeeeeeEEecCC
Confidence 5678888888888753
No 96
>PLN02773 pectinesterase
Probab=80.51 E-value=23 Score=33.87 Aligned_cols=171 Identities=9% Similarity=0.069 Sum_probs=102.0
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCceeee-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCC
Q 041973 171 INSCKNVIVRNVKLIAPDESPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGV 249 (392)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~ 249 (392)
....+++..+|++|.+......+...-+. .++++.+.||.|....|.+..+. ..-.++||++.+.-.+-+|.
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~----- 170 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN----- 170 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec-----
Confidence 33567899999999876432223344443 35899999999999999888765 36889999998877777765
Q ss_pred CCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEe
Q 041973 250 NEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRN 329 (392)
Q Consensus 250 ~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~n 329 (392)
-...|++|++.....| .|..........-....|.||++.+.... ...|.++++. +...+.|.|
T Consensus 171 -----g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~~~---~~~yLGRpW~-------~~a~vVf~~ 234 (317)
T PLN02773 171 -----STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNGGS---GYMYLGRPWG-------PFGRVVFAY 234 (317)
T ss_pred -----cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCCCC---cceeecCCCC-------CCceEEEEe
Confidence 3689999999876544 34332111112234689999999875421 1123333322 345666666
Q ss_pred EEEeeCCCceEEEEcCCCCceecEEEEeEEEEecC
Q 041973 330 IQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMN 364 (392)
Q Consensus 330 i~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~ 364 (392)
-.+...-.+..........+-+.+.|-..+-++++
T Consensus 235 t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~~~GpG 269 (317)
T PLN02773 235 TYMDACIRPVGWNNWGKAENERTACFYEYRCFGPG 269 (317)
T ss_pred cccCCeEccccccccCCCCCCCceEEEEEccccCC
Confidence 65543211111111111223356677665555544
No 97
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=78.27 E-value=1.4 Score=30.35 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=18.1
Q ss_pred CchhhHHHHHHHHhhhccccCCce
Q 041973 1 MAAKLLISCILSLFLTFFFKPSNA 24 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~~~~~~~~ 24 (392)
|+.|++++.+||+.|.+..+++++
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQ 24 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQ 24 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcc
Confidence 888999888888887766655543
No 98
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=77.44 E-value=46 Score=34.02 Aligned_cols=139 Identities=8% Similarity=0.005 Sum_probs=85.6
Q ss_pred EecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCC
Q 041973 149 DWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPG 223 (392)
Q Consensus 149 ~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~ 223 (392)
...+++..++++|+|... ..+.+. ..+...+.+|+|.+.++. +.... .+-.+++|+|...=|-|. +
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDT-----Ly~~~-~rqyy~~C~I~G~vDFIF-G-- 337 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDT-----LYAAA-LRQFYRECDIYGTIDFIF-G-- 337 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccch-----heeCC-CcEEEEeeEEEeccceEe-c--
Confidence 367899999999999754 234443 578999999999987653 33222 346889999997667664 2
Q ss_pred ceeEEEEeeeecCC---ce--eEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEE----EeecCCCC-ceEEeEEEEEEE
Q 041973 224 TRNLYMSSIKCGPG---HG--VSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRI----KSWARPSN-SFVRNVLFQNII 293 (392)
Q Consensus 224 s~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i----~~~~~~~~-g~v~ni~~~ni~ 293 (392)
.....++||.+..- .+ -.|-..+.. ....-..+.|.+|++......... +++= ++. ...+.+.|.+..
T Consensus 338 ~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yL-GRPW~~ysr~vf~~s~ 415 (497)
T PLN02698 338 NAAAVFQNCYLFLRRPHGKSYNVILANGRS-DPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYL-GRPWKKYSRAIVMESY 415 (497)
T ss_pred ccceeecccEEEEecCCCCCceEEEecCCC-CCCCCceEEEEeeEEecCCcccccccccceec-cCCCCCCceEEEEecc
Confidence 34789999988521 11 112122211 122346799999999886421111 1110 011 235677888888
Q ss_pred EecCc
Q 041973 294 MKNVQ 298 (392)
Q Consensus 294 ~~~~~ 298 (392)
|.+.-
T Consensus 416 l~~~I 420 (497)
T PLN02698 416 IDDAI 420 (497)
T ss_pred cCCcc
Confidence 77643
No 99
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=76.79 E-value=42 Score=34.73 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=21.5
Q ss_pred EecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCC
Q 041973 149 DWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPD 188 (392)
Q Consensus 149 ~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~ 188 (392)
...+++..+++++.|+.. ..+.+. .++...+.+|+|.+.+
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q 364 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ 364 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc
Confidence 345777777777777532 222222 3445555555555544
No 100
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=76.13 E-value=44 Score=34.48 Aligned_cols=116 Identities=6% Similarity=0.051 Sum_probs=80.8
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCceeee-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCC
Q 041973 171 INSCKNVIVRNVKLIAPDESPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGV 249 (392)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~ 249 (392)
....+++..+|++|.|.........+-+. .++...+.+|.|....|-+..+++ .-.++||++.+.-.+-+|.
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIFG~----- 381 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIFGN----- 381 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEeec-----
Confidence 34567899999999876533334555554 457899999999999998877763 4689999998877776765
Q ss_pred CCCcEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEeEEEEEEEEecCc
Q 041973 250 NEDGVENVTLTNSRFTGSD----NGVRIKSWARPSNSFVRNVLFQNIIMKNVQ 298 (392)
Q Consensus 250 ~~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~ 298 (392)
-.+.|+||++.... ..-.|....+.....-..+.|.||++....
T Consensus 382 -----a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~ 429 (538)
T PLN03043 382 -----AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAP 429 (538)
T ss_pred -----ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCC
Confidence 47889999987631 112343322222234467999999998753
No 101
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=75.69 E-value=54 Score=28.59 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=46.3
Q ss_pred ecEEEEceEEec-CC-------ceEEeCCCceeEEEEeeeecCCceeEEEe---cCCCCCCCcEEEEEEEeeEEeCCc--
Q 041973 202 TGVKITGSIMQT-GD-------DCISIGPGTRNLYMSSIKCGPGHGVSIGS---LGWGVNEDGVENVTLTNSRFTGSD-- 268 (392)
Q Consensus 202 ~nV~I~n~~i~~-gd-------D~i~~~~~s~ni~i~n~~~~~~~gi~igs---~g~~~~~~~~~ni~i~n~~~~~~~-- 268 (392)
++|.|.++.|.. |. .+| +.+|-.|.+|+|+.|.+..+.++.. .......+.-.-.+++|+.|.++.
T Consensus 34 ~nVhIhhN~fY~tGtn~~~~wvGGI-v~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r 112 (198)
T PF08480_consen 34 KNVHIHHNIFYDTGTNPNIDWVGGI-VTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR 112 (198)
T ss_pred ccEEEECcEeecCCcCCCCceeeeE-EeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeeec
Confidence 467776666654 21 222 2233567778888777654322221 111112333344777888877753
Q ss_pred ------ceEEEEeecCCCCceEEeEEEEEEEEecC
Q 041973 269 ------NGVRIKSWARPSNSFVRNVLFQNIIMKNV 297 (392)
Q Consensus 269 ------~gi~i~~~~~~~~g~v~ni~~~ni~~~~~ 297 (392)
.|-.|... ...-..+.++|..+-+.
T Consensus 113 ~~~~~GtGYgv~N~----L~~tHsFvLenNclYnN 143 (198)
T PF08480_consen 113 KSSPAGTGYGVINY----LPETHSFVLENNCLYNN 143 (198)
T ss_pred ccCCCCceeEEEec----CCCcceEEEEccceecc
Confidence 24444321 12345566777666554
No 102
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=75.21 E-value=44 Score=34.51 Aligned_cols=40 Identities=5% Similarity=-0.042 Sum_probs=19.5
Q ss_pred ecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEE
Q 041973 202 TGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIG 243 (392)
Q Consensus 202 ~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~ig 243 (392)
+...+.+|.|....|-+..++ ..-.+++|++.+.-++-+|
T Consensus 340 Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG 379 (539)
T PLN02995 340 DLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFG 379 (539)
T ss_pred CceeEEcceEecccchhccCC--CceEEEeeEEeeccceEec
Confidence 455555555555555544443 1235555555544444443
No 103
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=74.27 E-value=40 Score=34.74 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=11.5
Q ss_pred EEecCcEEEEeeEEeccc
Q 041973 148 FDWASNVMISGLTSINSQ 165 (392)
Q Consensus 148 ~~~~~nv~I~~v~i~n~~ 165 (392)
....+++..++++|.|..
T Consensus 315 ~v~~~~F~a~nit~~Nta 332 (537)
T PLN02506 315 AVSGRGFIARDITFRNTA 332 (537)
T ss_pred EEEcCCeEEEeeEEEeCC
Confidence 345667777777777653
No 104
>PLN02916 pectinesterase family protein
Probab=74.11 E-value=89 Score=31.93 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=10.0
Q ss_pred EecCcEEEEeeEEecc
Q 041973 149 DWASNVMISGLTSINS 164 (392)
Q Consensus 149 ~~~~nv~I~~v~i~n~ 164 (392)
...+++..++++|.|+
T Consensus 274 v~~~~F~A~nitf~Nt 289 (502)
T PLN02916 274 VSGDGFWARDITFENT 289 (502)
T ss_pred EECCCEEEEeeEEEeC
Confidence 3456666666666665
No 105
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=74.05 E-value=55 Score=34.22 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=9.8
Q ss_pred ecCcEEEEeeEEeccc
Q 041973 150 WASNVMISGLTSINSQ 165 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~~ 165 (392)
..+++..++++|.|..
T Consensus 360 ~~~~F~a~~itf~Nta 375 (587)
T PLN02313 360 VGERFLARDITFQNTA 375 (587)
T ss_pred ECCCeEEEeeEEEeCC
Confidence 4566666666666653
No 106
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=73.35 E-value=71 Score=32.82 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=9.5
Q ss_pred ecCcEEEEeeEEecc
Q 041973 150 WASNVMISGLTSINS 164 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~ 164 (392)
..+++..++++|.|+
T Consensus 291 ~~~~F~a~nitf~Nt 305 (520)
T PLN02201 291 SGRGFIARDITFQNT 305 (520)
T ss_pred ECCCeEEEeeEEEEC
Confidence 456666666666665
No 107
>PLN02314 pectinesterase
Probab=72.95 E-value=60 Score=33.97 Aligned_cols=116 Identities=9% Similarity=0.090 Sum_probs=80.2
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCceeee-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCC
Q 041973 171 INSCKNVIVRNVKLIAPDESPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGV 249 (392)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~ 249 (392)
....+++..+|++|.+.........+-+. .++...+.||.|....|-+..+++ .-.++||++.+.-++-+|.
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~----- 433 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN----- 433 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC-----
Confidence 34567899999999876433333445543 468899999999999998877763 4689999998877776664
Q ss_pred CCCcEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEeEEEEEEEEecCc
Q 041973 250 NEDGVENVTLTNSRFTGSD----NGVRIKSWARPSNSFVRNVLFQNIIMKNVQ 298 (392)
Q Consensus 250 ~~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~ 298 (392)
-...|+||.+.... ..-.|....+.....-..+.|.||++....
T Consensus 434 -----a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 -----AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred -----ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 37789999987531 112343322222345567899999998754
No 108
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=72.59 E-value=57 Score=34.10 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=22.2
Q ss_pred EEecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCC
Q 041973 148 FDWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPD 188 (392)
Q Consensus 148 ~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~ 188 (392)
....+++..++++|.|... ..+.+. ..+...+.+|+|...+
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q 401 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ 401 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC
Confidence 3356777777777777532 222222 3445555555555544
No 109
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=70.34 E-value=1.3e+02 Score=31.00 Aligned_cols=40 Identities=5% Similarity=0.001 Sum_probs=20.2
Q ss_pred EecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCC
Q 041973 149 DWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPD 188 (392)
Q Consensus 149 ~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~ 188 (392)
...+++..++++|.|... ..+.+. ..+...+.+|+|...+
T Consensus 302 v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q 346 (530)
T PLN02933 302 VKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ 346 (530)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc
Confidence 355677777777777532 122222 2444455555554433
No 110
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=69.60 E-value=89 Score=31.93 Aligned_cols=53 Identities=6% Similarity=-0.045 Sum_probs=26.3
Q ss_pred ecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEEEEEEeeEEeC
Q 041973 202 TGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTG 266 (392)
Q Consensus 202 ~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~ 266 (392)
+...+.+|.|....|-+..++ ..-.+++|++.+.-++-+|. -.+.|+||++..
T Consensus 312 Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~----------a~avFq~C~I~s 364 (509)
T PLN02488 312 DMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN----------AAAVFQFCQIVA 364 (509)
T ss_pred CcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc----------eEEEEEccEEEE
Confidence 455555555555555554443 23455555555444444433 245555555543
No 111
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=65.42 E-value=4.8 Score=22.85 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHhhhc
Q 041973 1 MAAKLLISCILSLFLTF 17 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~ 17 (392)
|++|+|+.+++...|+.
T Consensus 6 mmKkil~~l~a~~~Lag 22 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAG 22 (25)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56788888777766654
No 112
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=65.01 E-value=13 Score=34.13 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=22.3
Q ss_pred eEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEE-EEE
Q 041973 25 AYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKN-IVF 75 (392)
Q Consensus 25 ~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~-l~l 75 (392)
++.+....+.-.++--+-..+-+|+++. |.|+|.++. |..
T Consensus 126 ~fy~~K~~~~e~~vY~sF~~Lv~am~~n-----------p~Gty~LgadldA 166 (250)
T PF05342_consen 126 TFYIEKQKPSENNVYYSFKELVQAMNAN-----------PSGTYKLGADLDA 166 (250)
T ss_pred EEEeeccccccCCeEEcHHHHHHHHhhC-----------CCceEEECCccch
Confidence 3333333333344444666677777643 778998876 444
No 113
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=61.46 E-value=1.6e+02 Score=30.78 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=21.3
Q ss_pred ecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCC
Q 041973 150 WASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPD 188 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~ 188 (392)
..+++..++++|.|... ..+.+. ..+...+.+|+|...+
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q 388 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ 388 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc
Confidence 45677777777777542 222222 3445555555555543
No 114
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=58.01 E-value=96 Score=24.84 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=44.4
Q ss_pred EecCcEEEEeeEEecc---ccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEc-eEEecCCceEE
Q 041973 149 DWASNVMISGLTSINS---QLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITG-SIMQTGDDCIS 219 (392)
Q Consensus 149 ~~~~nv~I~~v~i~n~---~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n-~~i~~gdD~i~ 219 (392)
....+..+++-.+.+. ..+++.+..+.+..+.+.++. .. .. .+|+++..+....+.+ .......|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 5566777777777665 378888887766656666665 21 12 6889988887777777 44444555543
No 115
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=57.04 E-value=12 Score=20.09 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=12.8
Q ss_pred EEEEEEeeEEeCCcc-eEEEE
Q 041973 255 ENVTLTNSRFTGSDN-GVRIK 274 (392)
Q Consensus 255 ~ni~i~n~~~~~~~~-gi~i~ 274 (392)
.+++|++|++.+... |+.+.
T Consensus 2 ~~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 2 SNVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CCEEEECCEEEeCCCCcEEEe
Confidence 356677777777655 66664
No 116
>PLN02671 pectinesterase
Probab=53.98 E-value=2.2e+02 Score=27.78 Aligned_cols=17 Identities=18% Similarity=0.032 Sum_probs=11.7
Q ss_pred EEecCcEEEEeeEEecc
Q 041973 148 FDWASNVMISGLTSINS 164 (392)
Q Consensus 148 ~~~~~nv~I~~v~i~n~ 164 (392)
....+++..++++++|.
T Consensus 150 ~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 150 TIESDYFCATGITFENT 166 (359)
T ss_pred EEECCceEEEeeEEEcC
Confidence 34557777777777776
No 117
>PLN02682 pectinesterase family protein
Probab=53.39 E-value=2.3e+02 Score=27.79 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=59.1
Q ss_pred eeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecC---CceeEEEecCCCCC
Q 041973 174 CKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGP---GHGVSIGSLGWGVN 250 (392)
Q Consensus 174 ~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~---~~gi~igs~g~~~~ 250 (392)
.+...+.+|+|.+.++. +... .-+-.+++|+|...=|-|.= .....+++|++.. ..|. |-..+.. .
T Consensus 195 gDr~~fy~C~f~G~QDT-----Ly~~-~gRqyf~~C~IeG~VDFIFG---~g~a~Fe~C~I~s~~~~~G~-ITA~~r~-~ 263 (369)
T PLN02682 195 ADTAAFYGCKFLGAQDT-----LYDH-LGRHYFKDCYIEGSVDFIFG---NGLSLYEGCHLHAIARNFGA-LTAQKRQ-S 263 (369)
T ss_pred CCcEEEEcceEeccccc-----eEEC-CCCEEEEeeEEcccccEEec---CceEEEEccEEEEecCCCeE-EecCCCC-C
Confidence 55666667777665432 2111 23466777777765555422 2467777777752 1231 1111110 1
Q ss_pred CCcEEEEEEEeeEEeCCcceEEEE-eecCCCCceEEeEEEEEEEEecC
Q 041973 251 EDGVENVTLTNSRFTGSDNGVRIK-SWARPSNSFVRNVLFQNIIMKNV 297 (392)
Q Consensus 251 ~~~~~ni~i~n~~~~~~~~gi~i~-~~~~~~~g~v~ni~~~ni~~~~~ 297 (392)
...-....|.||++.+. .-+.+. .| .....+.|.|+.|.+.
T Consensus 264 ~~~~~GfvF~~C~itg~-g~~yLGRpW-----~~yarvVf~~t~m~~~ 305 (369)
T PLN02682 264 VLEDTGFSFVNCKVTGS-GALYLGRAW-----GTFSRVVFAYTYMDNI 305 (369)
T ss_pred CCCCceEEEEeeEecCC-CceEeecCC-----CCcceEEEEeccCCCc
Confidence 12345788999999875 233332 22 3456888888888765
No 118
>PLN02634 probable pectinesterase
Probab=51.87 E-value=2.4e+02 Score=27.54 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=11.4
Q ss_pred ecCcEEEEeeEEeccc
Q 041973 150 WASNVMISGLTSINSQ 165 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~~ 165 (392)
..+++..++++|+|+.
T Consensus 147 ~a~~F~a~niTf~Nta 162 (359)
T PLN02634 147 YANYFTARNISFKNTA 162 (359)
T ss_pred ECCCeEEEeCeEEeCC
Confidence 4577777888877763
No 119
>PRK11627 hypothetical protein; Provisional
Probab=48.52 E-value=18 Score=31.90 Aligned_cols=19 Identities=21% Similarity=0.217 Sum_probs=13.7
Q ss_pred CchhhHHHHHHHHhhhccc
Q 041973 1 MAAKLLISCILSLFLTFFF 19 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~~~ 19 (392)
||+|+|+.|+++++|+..+
T Consensus 1 mlkklll~l~a~~~L~gCA 19 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCA 19 (192)
T ss_pred ChHHHHHHHHHHHHHHhhc
Confidence 9999998777665565533
No 120
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=48.08 E-value=14 Score=27.45 Aligned_cols=17 Identities=41% Similarity=0.553 Sum_probs=13.2
Q ss_pred CchhhHHHHHHHHhhhc
Q 041973 1 MAAKLLISCILSLFLTF 17 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~ 17 (392)
|.+|+|++-+|.+.|..
T Consensus 1 MaRRlwiLslLAVtLtV 17 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTV 17 (100)
T ss_pred CchhhHHHHHHHHHHHH
Confidence 89999998777766654
No 121
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=47.43 E-value=3e+02 Score=28.45 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=39.7
Q ss_pred EEEecCcEEEEeeEEecccc----ceEEEe-ceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeC
Q 041973 147 TFDWASNVMISGLTSINSQL----IHLAIN-SCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIG 221 (392)
Q Consensus 147 ~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~ 221 (392)
.....+++..+|++|.|+.. ..+.+. ..+...+.+|+|...++. +... +.+-..++|+|...=|-|.
T Consensus 308 v~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDT-----Ly~~-~~Rqyy~~C~I~GtVDFIF-- 379 (529)
T PLN02170 308 VAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDS-----LYTH-SKRQFYRETDITGTVDFIF-- 379 (529)
T ss_pred EEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCc-----ceeC-CCCEEEEeeEEccccceec--
Confidence 34456778888888887632 122222 345556666666554432 2111 1234455565554434331
Q ss_pred CCceeEEEEeeeec
Q 041973 222 PGTRNLYMSSIKCG 235 (392)
Q Consensus 222 ~~s~ni~i~n~~~~ 235 (392)
|.....++||.+.
T Consensus 380 -G~a~avFq~C~I~ 392 (529)
T PLN02170 380 -GNSAVVFQSCNIA 392 (529)
T ss_pred -ccceEEEeccEEE
Confidence 1234555555543
No 122
>PLN02432 putative pectinesterase
Probab=44.96 E-value=2.8e+02 Score=26.28 Aligned_cols=130 Identities=8% Similarity=0.020 Sum_probs=72.2
Q ss_pred ecEEEEceEEec----CCceEEeCCCceeEEEEeeeecCCce-eEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEee
Q 041973 202 TGVKITGSIMQT----GDDCISIGPGTRNLYMSSIKCGPGHG-VSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSW 276 (392)
Q Consensus 202 ~nV~I~n~~i~~----gdD~i~~~~~s~ni~i~n~~~~~~~g-i~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~ 276 (392)
+++..+|..|.| +.-++++........+.||.+.+..+ +.... -.-+++||.+++.-. +- +
T Consensus 94 ~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~----------gr~yf~~c~I~G~VD---FI-F 159 (293)
T PLN02432 94 SDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT----------GRHYYRNCYIEGATD---FI-C 159 (293)
T ss_pred CCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECC----------CCEEEEeCEEEeccc---EE-e
Confidence 445555555554 23467776666788899998876544 43311 145788888887521 11 0
Q ss_pred cCCCCceEEeEEEEEEEEecCce-eEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeCCCceEEEEcCCCCceecEEE
Q 041973 277 ARPSNSFVRNVLFQNIIMKNVQN-PILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIIL 355 (392)
Q Consensus 277 ~~~~~g~v~ni~~~ni~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~ 355 (392)
|. ....|++|++..... .-.|...-+. .+ ..-....|.|-+++... ..+ .|.|=.+-..+.|
T Consensus 160 -----G~-g~a~Fe~c~i~s~~~~~g~itA~~r~---~~-----~~~~Gfvf~~c~itg~g--~~y-LGRpW~~~srvvf 222 (293)
T PLN02432 160 -----GN-AASLFEKCHLHSLSPNNGAITAQQRT---SA-----SENTGFTFLGCKLTGAG--TTY-LGRPWGPYSRVVF 222 (293)
T ss_pred -----cC-ceEEEEeeEEEEecCCCCeEEecCCC---CC-----CCCceEEEEeeEEcccc--hhh-ccCCCCCccEEEE
Confidence 00 235688888865321 1233321110 00 11225777777777532 233 3666667778888
Q ss_pred EeEEEEe
Q 041973 356 QDIKLTY 362 (392)
Q Consensus 356 ~ni~i~~ 362 (392)
.|..+..
T Consensus 223 ~~t~l~~ 229 (293)
T PLN02432 223 ALSYMSS 229 (293)
T ss_pred EecccCC
Confidence 8888764
No 123
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=44.95 E-value=2.3e+02 Score=29.84 Aligned_cols=115 Identities=8% Similarity=0.053 Sum_probs=79.6
Q ss_pred eceeeEEEEeEEEECCCCCCCCCceeee-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCC
Q 041973 172 NSCKNVIVRNVKLIAPDESPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVN 250 (392)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 250 (392)
...+++..+|++|.|.........+-+. .++...+.||.|....|-+..+. ..-.+++|++.+.-++-+|.
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 440 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------ 440 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc------
Confidence 3567899999999875432233445443 46899999999999999887765 35789999998877766665
Q ss_pred CCcEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEeEEEEEEEEecCc
Q 041973 251 EDGVENVTLTNSRFTGSDN----GVRIKSWARPSNSFVRNVLFQNIIMKNVQ 298 (392)
Q Consensus 251 ~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~ni~~~ni~~~~~~ 298 (392)
-...|+||++.-... .-.|....+.....-..+.|.||++....
T Consensus 441 ----a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 ----AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ----eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 478899999875311 12343321122234578999999998754
No 124
>PLN02665 pectinesterase family protein
Probab=44.27 E-value=3.2e+02 Score=26.79 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=100.0
Q ss_pred EeceeeEEEEeEEEECCCCC-----CCCCceeee-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEe
Q 041973 171 INSCKNVIVRNVKLIAPDES-----PNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGS 244 (392)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs 244 (392)
...++++..+|++|.|.... .....+-+. ..++..+.||.|....|-+.... ..-.++||++.+.-++-+|.
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~ 227 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGS 227 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceeccc
Confidence 34577899999999875321 112333332 35889999999999999887664 36789999998877766654
Q ss_pred cCCCCCCCcEEEEEEEeeEEeCCcce--EEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcceE
Q 041973 245 LGWGVNEDGVENVTLTNSRFTGSDNG--VRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKI 322 (392)
Q Consensus 245 ~g~~~~~~~~~ni~i~n~~~~~~~~g--i~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i 322 (392)
-...|++|++.....+ -.|....+.....-....|.||++.+... ..|.++++. +.
T Consensus 228 ----------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~-----~~yLGRpW~-------~y 285 (366)
T PLN02665 228 ----------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGT-----GAYLGRAWM-------SR 285 (366)
T ss_pred ----------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCC-----ceeecCCCC-------Cc
Confidence 3568888988865443 23333211122234577899999988541 223433322 34
Q ss_pred EeEEEEeEEEeeCCCceEEEEcCCCCceecEEEEeEEEEecC
Q 041973 323 SQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMN 364 (392)
Q Consensus 323 ~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~ 364 (392)
..+.|.+-.+...-.............-+.+.|--.+-.+++
T Consensus 286 srvVf~~t~m~~~I~p~GW~~w~~~~~~~t~~f~Ey~~~GpG 327 (366)
T PLN02665 286 PRVVFAYTEMSSVVNPEGWSNNKHPERDKTVFYGEYKCTGPG 327 (366)
T ss_pred ceEEEEccccCCeEccCccCCCCCCCCCCceEEEEEcccCCC
Confidence 567777666543211111111111112356777666655544
No 125
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=40.68 E-value=2.5e+02 Score=29.07 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=10.7
Q ss_pred ecCcEEEEeeEEeccc
Q 041973 150 WASNVMISGLTSINSQ 165 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~~ 165 (392)
..+++..++++|+|+.
T Consensus 315 ~~~~F~a~nitf~Nta 330 (541)
T PLN02416 315 SGEGFLARDITIENTA 330 (541)
T ss_pred ECCCeEEEeeEEEECC
Confidence 4567777777777653
No 126
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.59 E-value=18 Score=28.05 Aligned_cols=12 Identities=33% Similarity=0.235 Sum_probs=7.4
Q ss_pred CchhhHHHHHHH
Q 041973 1 MAAKLLISCILS 12 (392)
Q Consensus 1 m~~~~l~~~~~~ 12 (392)
|.+|.|++|.+|
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 778766655444
No 127
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=37.27 E-value=5.1e+02 Score=27.10 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=77.8
Q ss_pred eceeeEEEEeEEEECCCCCCCCCceeee-ceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCC
Q 041973 172 NSCKNVIVRNVKLIAPDESPNTDGIHIQ-SSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVN 250 (392)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 250 (392)
...+++..+|++|.|.........+-+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-++-+|.
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 408 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGN------ 408 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceeccc------
Confidence 3457899999999875433334445443 457899999999998898887763 4689999998776766654
Q ss_pred CCcEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEeEEEEEEEEecCc
Q 041973 251 EDGVENVTLTNSRFTGSDN----GVRIKSWARPSNSFVRNVLFQNIIMKNVQ 298 (392)
Q Consensus 251 ~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~ni~~~ni~~~~~~ 298 (392)
-.+.|+||++..... .-.|....+.....-..+.|.||++....
T Consensus 409 ----a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 409 ----AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred ----ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCC
Confidence 478889999875311 11333322222234567899999998653
No 128
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=36.68 E-value=3.6e+02 Score=27.07 Aligned_cols=211 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCCCcEEEEcCceEEEEEEEEecCCCccEEEEEc--eEEEecCccccccCcccEEEEEeeeEEEEEc-
Q 041973 43 QAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIK--GTIVAPTDYHVIGKTGNWILFVQVDRVSVIG- 119 (392)
Q Consensus 43 ~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~--G~l~~~~~~~~~~~~~~li~~~~~~nv~I~G- 119 (392)
+-|.+|+...-...-...+++-.|+|....+.+. |+|++.+. +.+ ++.|.++|
T Consensus 33 D~iEea~~~l~e~~~e~LIFlH~G~~e~~~i~I~----sdvqiiGAs~~di--------------------a~sVvle~~ 88 (625)
T KOG1777|consen 33 DHIEEALRFLDENDEEKLIFLHEGTHETETIRIT----SDVQIIGASPSDI--------------------ATSVVLEGR 88 (625)
T ss_pred hhHHHHhhhcccccccceEEEEeccccceEEEEc----CCeeEeccCCccc--------------------eeeEEEecc
Q ss_pred --cEEeCCCCccccccCC----------------------------CCCCCCCCeeEEEEecCcEEEEeeEEeccccceE
Q 041973 120 --GTLDAQGAGFWACRKS----------------------------GQNCPVGSRSITFDWASNVMISGLTSINSQLIHL 169 (392)
Q Consensus 120 --g~idg~g~~~w~~~~~----------------------------~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i 169 (392)
-++.-...+|..+-.. -......+.++.....-.=+++.+.+.+...-++
T Consensus 89 ~~t~l~F~~~AY~Gy~Tvkf~~d~~h~~h~~ld~~~d~~p~ie~c~i~s~~~~g~Avcv~g~a~P~~~~c~isDceNvgl 168 (625)
T KOG1777|consen 89 HATTLEFQESAYVGYVTVKFEPDQEHHAHVCLDIEVDASPAIEECIIRSTGGVGAAVCVPGEAEPEIKLCAISDCENVGL 168 (625)
T ss_pred cccEEEEeecceEEEEEEEeccccccceeEEEeeccCCCcccccccccCCCccCcccccCCccCcceeecccccCcceeE
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCc--eeEEEecCC
Q 041973 170 AINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGH--GVSIGSLGW 247 (392)
Q Consensus 170 ~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~--gi~igs~g~ 247 (392)
.+..--.-.++++.|.+... .|+.+..--.-++++|++..|.|.-.+...-..=.+.+|.+.... |+.+...
T Consensus 169 yvTd~a~g~yEh~ei~~Nal----A~vwvknha~p~~R~~~ih~G~dvGiftf~hg~Gy~e~cd~~qnlisg~eVkf~-- 242 (625)
T KOG1777|consen 169 YVTDHAQGIYEHCEISRNAL----AGVWVKNHAFPTMRNCTIHHGRDVGIFTFEHGQGYFESCDIHQNLISGIEVKFR-- 242 (625)
T ss_pred EEEeccccceecchhccccc----cceeeccccChhhhhceeecCCccceEEeccCcCCCccchHHHhhhcceEEEee--
Q ss_pred CCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEE
Q 041973 248 GVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQN 291 (392)
Q Consensus 248 ~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~n 291 (392)
-|=++-+|.+.....| .|.....+.+-.++|=.+.|
T Consensus 243 -------anp~~~rcevhh~~~g-gi~vhedG~GqF~en~iyan 278 (625)
T KOG1777|consen 243 -------ANPIVLRCEVHHGKTG-GIYVHEDGLGQFLENSIYAN 278 (625)
T ss_pred -------ccceEEEEEEeeCCCC-cEEEeecchhhhhhhhhhcc
No 129
>PLN02176 putative pectinesterase
Probab=32.24 E-value=4.8e+02 Score=25.30 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=85.0
Q ss_pred ecCcEEEEeeEEecccc----------ceEEEe-ceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceE
Q 041973 150 WASNVMISGLTSINSQL----------IHLAIN-SCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCI 218 (392)
Q Consensus 150 ~~~nv~I~~v~i~n~~~----------~~i~~~-~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i 218 (392)
..+++..++++++|... ..+.+. ..+...+.+|+|.+.++. +... ..+-..++|.|...=|-|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDT-----Ly~~-~gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDT-----LFDG-KGRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccce-----eEeC-CcCEEEEecEEEecccEE
Confidence 57999999999998742 233333 578899999999986643 3222 346888999999877766
Q ss_pred EeCCCceeEEEEeeeecCC---------ceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEE-eecCCCCceEEeEE
Q 041973 219 SIGPGTRNLYMSSIKCGPG---------HGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIK-SWARPSNSFVRNVL 288 (392)
Q Consensus 219 ~~~~~s~ni~i~n~~~~~~---------~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~-~~~~~~~g~v~ni~ 288 (392)
. + .....++||++..- .|. |-..+.. ....-....|.||++.+.. -..+. .| ..-..+.
T Consensus 194 F-G--~a~a~Fe~C~I~s~~~~~~~~~~~g~-ITA~~r~-~~~~~~GfvF~~C~itg~g-~~yLGRPW-----~~yarvV 262 (340)
T PLN02176 194 F-G--YAQSIFEGCTLKLTLGIYPPNEPYGT-ITAQGRP-SPSDKGGFVFKDCTVTGVG-KALLGRAW-----GSYARVI 262 (340)
T ss_pred e-c--CceEEEeccEEEEecccCCCCCCcEE-EEeCCCC-CCCCCcEEEEECCEEccCc-ceeeecCC-----CCCceEE
Confidence 4 2 34789999988621 121 1111111 1123457999999998752 23332 22 3357899
Q ss_pred EEEEEEecC
Q 041973 289 FQNIIMKNV 297 (392)
Q Consensus 289 ~~ni~~~~~ 297 (392)
|.|+.|.+.
T Consensus 263 f~~t~m~~~ 271 (340)
T PLN02176 263 FYRSRFSDV 271 (340)
T ss_pred EEecCcCCe
Confidence 999988764
No 130
>PLN02497 probable pectinesterase
Probab=32.02 E-value=4.7e+02 Score=25.21 Aligned_cols=40 Identities=8% Similarity=-0.026 Sum_probs=20.0
Q ss_pred ecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEE
Q 041973 202 TGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIG 243 (392)
Q Consensus 202 ~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~ig 243 (392)
++..+.||.|....|-+.... ..-.++||++.+.-++-+|
T Consensus 150 Dr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 150 DKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred CcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEcc
Confidence 455555555555555544332 2345555555544444443
No 131
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=31.93 E-value=51 Score=33.77 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=16.0
Q ss_pred CchhhHHHHHHHHhhhccccCCc
Q 041973 1 MAAKLLISCILSLFLTFFFKPSN 23 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~~~~~~~ 23 (392)
|+++++++|+++++.+.++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (499)
T PRK15346 1 MKKLLILIFLFLLNTAKFAASKS 23 (499)
T ss_pred CchhHHHHHHHHHhhhhhhccCC
Confidence 78888888887777765444443
No 132
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=31.80 E-value=2.1e+02 Score=23.11 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=30.7
Q ss_pred CCcEEEEcCceEEEEEEEEecCCCccEEEEEceEEEecCccccccCcccEEEEEeeeEEEEEc-cEEe
Q 041973 57 KASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIG-GTLD 123 (392)
Q Consensus 57 ~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I~G-g~id 123 (392)
.+..|+||+|...+=....+ .--.|...|+|.|..+ ++ +.+. ++.|.|.| |.+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~----~l~~l~I~G~L~f~~~-~~-------~~L~-a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTP----KLGSLIIGGTLIFDDD-RD-------ITLR-AEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCCh----heeEEEEEEEEEEccC-CC-------CEEE-EEEEEECCCCeEE
Confidence 36789999997543221110 1123334889988654 22 2233 67888888 4543
No 133
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=31.37 E-value=1.1e+02 Score=27.19 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=32.4
Q ss_pred CchhhHHHHHHHHhhhccccCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCc
Q 041973 1 MAAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTG 66 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~~~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G 66 (392)
|++.+++++.+++++++++. -+|.-||+.| -.|+-..-|..+ .+..+..|.+-.|
T Consensus 1 Mk~~~~i~~~~~La~s~~~~-----adinlYGpGG----PhtaL~~vA~~~--~ektg~kVnvt~G 55 (252)
T COG4588 1 MKKAVLILLIFLLAFSSAAN-----ADINLYGPGG----PHTALKDVAKKY--EEKTGIKVNVTAG 55 (252)
T ss_pred CchhHHHHHHHHHHhhhhhc-----ceEEEecCCC----CcHHHHHHHHHH--HHHhCeEEEEecC
Confidence 67666666666666654222 2667798743 345544445543 4556777877665
No 134
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=28.99 E-value=37 Score=17.56 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=6.6
Q ss_pred CchhhHHHHHHHHhh
Q 041973 1 MAAKLLISCILSLFL 15 (392)
Q Consensus 1 m~~~~l~~~~~~~~l 15 (392)
|+ |+.++|+.++.+
T Consensus 1 MM-k~vIIlvvLLli 14 (19)
T PF13956_consen 1 MM-KLVIILVVLLLI 14 (19)
T ss_pred Cc-eehHHHHHHHhc
Confidence 44 444454444444
No 135
>PHA00672 hypothetical protein
Probab=27.09 E-value=1.1e+02 Score=24.98 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=18.1
Q ss_pred cEEEEcCceEEEEEEEEecCCCccEEEEEceE
Q 041973 59 STIYVPTGRYLIKNIVFRGPCKNKIAIQIKGT 90 (392)
Q Consensus 59 ~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G~ 90 (392)
.++.||+|+-+++.+.=. +++ |.+.|.
T Consensus 50 Rei~IPkGt~LtG~~hkf----~~~-ii~sG~ 76 (152)
T PHA00672 50 RTIRIPAGVALTGALIKV----STV-LIFSGH 76 (152)
T ss_pred EEEeccCceeeeeeeeEe----eEE-EEeccc
Confidence 368899999888874332 566 555563
No 136
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=26.89 E-value=35 Score=23.46 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHhhhccccCCceeEEEecC
Q 041973 3 AKLLISCILSLFLTFFFKPSNAAYNVIDL 31 (392)
Q Consensus 3 ~~~l~~~~~~~~l~~~~~~~~~~~~v~~~ 31 (392)
+|+|.++++++++...+.| -+-|.|-
T Consensus 2 k~i~~~~~~~~~~~~~a~A---QWvV~DP 27 (55)
T PF13605_consen 2 KKILMLCVACLLLAGPARA---QWVVTDP 27 (55)
T ss_pred cchHHHHHHHHhcCCccee---EEEEeCc
Confidence 5677777766654433333 3455443
No 137
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=26.21 E-value=1.1e+02 Score=28.38 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=33.1
Q ss_pred CchhhHHHHHHHHhhhccccCCceeEEEecCCccCCCCcccHHHHHHHHHHh---ccc--CC--CcEEEEcCceE
Q 041973 1 MAAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAA---CSS--VK--ASTIYVPTGRY 68 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~~~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a---~~~--~~--g~~v~ip~G~Y 68 (392)
|++|.+++|+++++|+. +. ...-|.. =...|..++.++|+.. ... .+ |.+|.+|+..+
T Consensus 1 m~~~~~~~~~~~~lLs~--c~-----~~~Lys~---L~~~dAneIv~~L~~~gI~y~~~~~gk~G~tI~V~~~d~ 65 (252)
T PRK15324 1 MIRRYLYTFLLVMTLAG--CK-----DKDLLKG---LDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDF 65 (252)
T ss_pred CchHHHHHHHHHHHHcC--CC-----eehhhcC---CCHHHHHHHHHHHHHCCCCeEeccCCCCceEEEEcHHHH
Confidence 88888887766555533 11 1223321 2347888899999865 111 11 34677777764
No 138
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=24.37 E-value=69 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.168 Sum_probs=14.6
Q ss_pred CchhhHHHHHHHHhhhccccCCc
Q 041973 1 MAAKLLISCILSLFLTFFFKPSN 23 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~~~~~~~ 23 (392)
|++|.|..++++++++..+.|..
T Consensus 1 mk~~~l~a~l~~~~~~~~a~A~e 23 (142)
T PF10614_consen 1 MKYRGLLALLLLLLAASSAQAQE 23 (142)
T ss_pred CcEeHHHHHHHHHHcccccchhh
Confidence 88888866666666555454443
No 139
>PRK09936 hypothetical protein; Provisional
Probab=23.80 E-value=1.6e+02 Score=27.75 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHhhhccccCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceE
Q 041973 3 AKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRY 68 (392)
Q Consensus 3 ~~~l~~~~~~~~l~~~~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y 68 (392)
+|++.+|++.++++++++|...++ ...+...-+=...+=+.+-+++.+ .|..+|++-=-.|
T Consensus 2 ~~~~~~~l~~l~~~~~~~a~~g~F-~Qp~n~d~~~~~~qWq~~~~~~~~----~G~~tLivQWt~y 62 (296)
T PRK09936 2 RKFIFVLLTLLLVSPFSQAMKGIF-YQPQNRDSQVTDTQWQGLWSQLRL----QGFDTLVVQWTRY 62 (296)
T ss_pred hhHHHHHHHHHHcCchhhccccce-eccccccCCCCHHHHHHHHHHHHH----cCCcEEEEEeeec
Confidence 478888888888877677766655 444433222222233345555543 5777777754333
No 140
>PRK09752 adhesin; Provisional
Probab=22.58 E-value=1.2e+03 Score=26.78 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEe-ceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEc
Q 041973 130 WACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAIN-SCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITG 208 (392)
Q Consensus 130 w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~-~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n 208 (392)
|..... .++|.-....|-.=--+.+..+..+.|.++ ...+..+.+.++.... .++-.|.-.....+.|.+
T Consensus 57 ~~~~~~-------~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~t~F~nNtasG~~--~sGGAIya~~~~~itI~n 127 (1250)
T PRK09752 57 WSIADG-------QWLVFSDMTNNASGGAVFLQQGAEFTLSPENETGMTLFANNTVSGEY--NNGGAIFAKENSTLNLTD 127 (1250)
T ss_pred ceeccC-------cEEEecccccCCcCceEEeeccccEEEecccCccceEeecceecCCc--CCccEEEecCcceeEEee
Q ss_pred eEEec---CCceEEeCCCcee------EEEEeeeecCC-----ceeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEE
Q 041973 209 SIMQT---GDDCISIGPGTRN------LYMSSIKCGPG-----HGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIK 274 (392)
Q Consensus 209 ~~i~~---gdD~i~~~~~s~n------i~i~n~~~~~~-----~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~ 274 (392)
+.|.+ ...+=++.....+ +.|.|+.|.+. .|=+|-+.. .++.|.|+.|.+. .++.-.
T Consensus 128 s~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~n--------g~vtIsnS~F~nN-~A~~s~ 198 (1250)
T PRK09752 128 VIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTIN--------NDVYLSDVIFDNN-QAYTST 198 (1250)
T ss_pred eEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEcc--------CcEEEEeeEEeCC-cccccc
Q ss_pred eecCCCCceEE-------------eEEEEEEEEecCc
Q 041973 275 SWARPSNSFVR-------------NVLFQNIIMKNVQ 298 (392)
Q Consensus 275 ~~~~~~~g~v~-------------ni~~~ni~~~~~~ 298 (392)
......+|.|. ++.+.|+.|.+..
T Consensus 199 s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnNs 235 (1250)
T PRK09752 199 SYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNT 235 (1250)
T ss_pred cccCCCceEEEeccCCCccccccceEEEeccEEEccc
No 141
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=22.24 E-value=55 Score=20.25 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=9.8
Q ss_pred CchhhHHHHHHHHhh
Q 041973 1 MAAKLLISCILSLFL 15 (392)
Q Consensus 1 m~~~~l~~~~~~~~l 15 (392)
++++++++|++...+
T Consensus 1 LKsKl~l~CLA~aav 15 (37)
T PF11131_consen 1 LKSKLFLICLAAAAV 15 (37)
T ss_pred CchhHHHHHHHHHHH
Confidence 356778887766444
No 142
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=22.18 E-value=1.2e+02 Score=27.31 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=9.0
Q ss_pred CchhhHHHHHHHHhhhccc
Q 041973 1 MAAKLLISCILSLFLTFFF 19 (392)
Q Consensus 1 m~~~~l~~~~~~~~l~~~~ 19 (392)
|+ ++++.|++++.|+..+
T Consensus 1 mk-~l~~~l~~~l~LsgCa 18 (215)
T PF05643_consen 1 MK-KLILGLAAALLLSGCA 18 (215)
T ss_pred Ch-hHHHHHHHHHHHhhcc
Confidence 55 4455555555555433
No 143
>PRK09810 entericidin A; Provisional
Probab=21.08 E-value=86 Score=20.17 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=7.9
Q ss_pred CchhhHHHHHHHHh
Q 041973 1 MAAKLLISCILSLF 14 (392)
Q Consensus 1 m~~~~l~~~~~~~~ 14 (392)
|++|++.+++++++
T Consensus 1 mMkk~~~l~~~~~~ 14 (41)
T PRK09810 1 MMKRLIVLVLLAST 14 (41)
T ss_pred ChHHHHHHHHHHHH
Confidence 66676666544433
Done!