BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041975
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 22/170 (12%)
Query: 133 LEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCN---------LKSLESLYLSGCLKLEK 183
L LP+SI +L+RL L +R C L ++ L + L +L+SL L +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRS 197
Query: 184 LPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGC---KGRPPQMGLKLPILF 240
LP I NL +LK++ +S + +I L ++E L GC + PP G + P
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP--- 254
Query: 241 QSQILENLSLINC-NIIELPESLGQLPSLKYLNLEE-NNFEKIPSNIKQV 288
L+ L L +C N++ LP + +L L+ L+L N ++PS I Q+
Sbjct: 255 ----LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 95 FHWDGYPLKTLPSKISP-EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRK 153
W G +++LP+ I+ ++L SL++ NS L L +I +L +L LDLR
Sbjct: 190 LEWTG--IRSLPASIANLQNLKSLKIRNS---------PLSALGPAIHHLPKLEELDLRG 238
Query: 154 CLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNM-VANEIAISQVPSSIS 212
C L+ L+ L L C L LP +I L L+ + + + +S++PS I+
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 213 CL 214
L
Sbjct: 299 QL 300
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 16/181 (8%)
Query: 181 LEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILF 240
L +LP+ L+ + + +P+SI+ LNR+ LS C P L P+
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC---PELTELPEPLAS 172
Query: 241 QSQILENLSLIN--------CNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLS 292
E+ L+N I LP S+ L +LK L + + + I + KL
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 293 LLILDNWKRFLSLPELPCGSSVYAR----HCXXXXXXXXXXXXFKPLCQKFDFCNCFKLN 348
L L + P + G + R C L +K D C L+
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL-EKLDLRGCVNLS 291
Query: 349 R 349
R
Sbjct: 292 R 292
>pdb|1HZ4|A Chain A, Crystal Structure Of Transcription Factor Malt Domain Iii
Length = 373
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 409 ELPPGWFYNNFVGFALCAIFPEFRGD-TRNLLVDSEFKLKTKDGD-WHVATYLLF 461
ELPPGWFY+ V ++ +G+ TR+L + + + + D WH A + L
Sbjct: 43 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 245 LENLSLINCNIIEL-PESLGQLPSLKYLNLEENNFEKIPSN-IKQVSKLSLLILDNWKRF 302
L L L C + EL P L +L+YL L++NN + +P N + + L+ L L R
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHG-NRI 164
Query: 303 LSLPE 307
S+PE
Sbjct: 165 PSVPE 169
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 129 NDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEI 188
N L ELP+ I NLS L LDL RL + + L + L+ Y + + LP E
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEF 312
Query: 189 GNLGSLK 195
GNL +L+
Sbjct: 313 GNLCNLQ 319
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 144 SRLVTLDLRKCLRLK-KVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEI 202
+RL L+L +C K +V +L L +L+ + +L+ LP L +L + +
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHN----QLQSLPLLGQTLPALTVLDVSFN 110
Query: 203 AISQVP-SSISCLNRVELLSFAG--CKGRPPQMGLKLPILFQSQILENLSLINCNIIELP 259
++ +P ++ L ++ L G K PP + L + LE LSL N N+ ELP
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNLTELP 164
Query: 260 ES-LGQLPSLKYLNLEENNFEKIP 282
L L +L L L+EN+ IP
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 144 SRLVTLDLRKCLRLK-KVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEI 202
+RL L+L +C K +V +L L +L+ + +L+ LP L +L + +
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHN----QLQSLPLLGQTLPALTVLDVSFN 111
Query: 203 AISQVP-SSISCLNRVELLSFAG--CKGRPPQMGLKLPILFQSQILENLSLINCNIIELP 259
++ +P ++ L ++ L G K PP + L + LE LSL N N+ ELP
Sbjct: 112 RLTSLPLGALRGLGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNLTELP 165
Query: 260 ES-LGQLPSLKYLNLEENNFEKIP 282
L L +L L L+EN+ IP
Sbjct: 166 AGLLNGLENLDTLLLQENSLYTIP 189
>pdb|3A5I|A Chain A, Structure Of The Cytoplasmic Domain Of Flha
pdb|3A5I|B Chain B, Structure Of The Cytoplasmic Domain Of Flha
Length = 389
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 110 SPEHLVSLEMP--NSNIEQLWNDVQLEE 135
+PE ++MP NS +E WNDVQLE+
Sbjct: 31 APEEPQPVKMPENNSVVEATWNDVQLED 58
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 238 ILFQSQILENLSLINCNIIELPES-LGQLPSLKYLNLEENNFEKIP 282
+L + LE LSL N N+ ELP L L +L L L+EN+ IP
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 238 ILFQSQILENLSLINCNIIELPES-LGQLPSLKYLNLEENNFEKIP 282
+L + LE LSL N N+ ELP L L +L L L+EN+ IP
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 238 ILFQSQILENLSLINCNIIELPES-LGQLPSLKYLNLEENNFEKIP 282
+L + LE LSL N N+ ELP L L +L L L+EN+ IP
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 144 SRLVTLDLRKCLRLK-KVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEI 202
+RL L+L +C K +V +L L +L+ + +L+ LP L +L + +
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHN----QLQSLPLLGQTLPALTVLDVSFN 110
Query: 203 AISQVP-SSISCLNRVELLSFAG--CKGRPPQMGLKLPILFQSQILENLSLINCNIIELP 259
++ +P ++ L ++ L G K PP + L + LE LSL N ++ ELP
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNDLTELP 164
Query: 260 ES-LGQLPSLKYLNLEENNFEKIP 282
L L +L L L+EN+ IP
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 61 RLRFFKFYNSISGENRCKVHHVRSMESLFNEQR----YFHWDGYPLKTLPSKISP 111
+L F F S E R + +R+++ FN + FH+ +P +PS I P
Sbjct: 150 QLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPAHDVPSSIDP 204
>pdb|1DLC|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin From
Bacillus Thuringiensis At 2.5 Angstroms Resolution
Length = 584
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 16/98 (16%)
Query: 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNE 91
G + G S ++ P +F +HR++F H R +
Sbjct: 250 GVNNLRGYGTTFSNIENYIRKPHLFDYLHRIQF----------------HTRFQPGYYGN 293
Query: 92 QRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWN 129
+ +W G + T PS S + + S N + E + N
Sbjct: 294 DSFNYWSGNYVSTRPSIGSNDIITSPFYGNKSSEPVQN 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,467,421
Number of Sequences: 62578
Number of extensions: 681641
Number of successful extensions: 1629
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1589
Number of HSP's gapped (non-prelim): 89
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)