Query 041975
Match_columns 543
No_of_seqs 692 out of 3863
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.5E-46 9.8E-51 431.9 38.6 475 9-530 511-1100(1153)
2 PLN00113 leucine-rich repeat r 99.9 2E-25 4.3E-30 258.5 19.9 251 33-305 68-324 (968)
3 PLN00113 leucine-rich repeat r 99.9 8.6E-24 1.9E-28 244.9 18.5 223 58-299 138-366 (968)
4 KOG0444 Cytoskeletal regulator 99.9 2.5E-24 5.5E-29 218.4 -3.3 258 35-306 79-379 (1255)
5 KOG4194 Membrane glycoprotein 99.9 1.6E-23 3.4E-28 211.5 2.4 232 49-300 186-427 (873)
6 KOG0444 Cytoskeletal regulator 99.9 1.9E-24 4.2E-29 219.2 -5.6 254 56-325 74-378 (1255)
7 PLN03210 Resistant to P. syrin 99.8 1.9E-19 4.2E-24 209.9 20.5 130 169-306 779-910 (1153)
8 KOG0472 Leucine-rich repeat pr 99.8 3.8E-23 8.2E-28 200.5 -9.9 223 53-301 84-309 (565)
9 KOG4194 Membrane glycoprotein 99.8 3.9E-20 8.4E-25 187.2 7.6 245 40-300 82-352 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 5.6E-22 1.2E-26 192.5 -11.4 237 39-300 48-286 (565)
11 PRK15387 E3 ubiquitin-protein 99.7 1.4E-16 3.1E-21 174.0 15.7 209 60-302 222-458 (788)
12 KOG0618 Serine/threonine phosp 99.7 6.9E-19 1.5E-23 187.0 -2.4 197 145-345 242-487 (1081)
13 KOG0617 Ras suppressor protein 99.7 2E-19 4.3E-24 156.0 -5.9 157 91-285 34-192 (264)
14 KOG0617 Ras suppressor protein 99.7 4.5E-19 9.8E-24 153.8 -4.1 157 55-228 28-186 (264)
15 PRK15370 E3 ubiquitin-protein 99.7 7.7E-17 1.7E-21 177.1 12.1 179 90-299 199-377 (754)
16 PRK15370 E3 ubiquitin-protein 99.7 7.4E-17 1.6E-21 177.2 9.2 205 60-306 199-404 (754)
17 KOG0618 Serine/threonine phosp 99.7 3.1E-18 6.7E-23 182.1 -2.8 270 35-321 44-488 (1081)
18 PRK15387 E3 ubiquitin-protein 99.6 2.5E-15 5.4E-20 164.4 16.4 212 60-317 201-430 (788)
19 KOG4237 Extracellular matrix p 99.6 7.8E-17 1.7E-21 156.8 -5.5 270 35-334 68-360 (498)
20 cd00116 LRR_RI Leucine-rich re 99.5 8.7E-16 1.9E-20 155.2 -4.1 60 168-227 137-205 (319)
21 cd00116 LRR_RI Leucine-rich re 99.4 6.3E-15 1.4E-19 149.0 -3.4 188 111-301 50-262 (319)
22 KOG4237 Extracellular matrix p 99.4 2E-14 4.4E-19 140.1 -4.2 255 34-301 91-476 (498)
23 KOG0532 Leucine-rich repeat (L 99.3 4.4E-14 9.5E-19 143.6 -5.4 191 91-300 76-271 (722)
24 KOG0532 Leucine-rich repeat (L 99.3 7.3E-14 1.6E-18 142.0 -4.5 192 95-306 55-250 (722)
25 COG4886 Leucine-rich repeat (L 99.3 4.4E-12 9.6E-17 132.2 6.3 196 94-306 97-294 (394)
26 KOG1259 Nischarin, modulator o 99.3 8.8E-13 1.9E-17 124.4 0.8 130 143-281 283-414 (490)
27 KOG4658 Apoptotic ATPase [Sign 99.2 2.3E-11 5E-16 136.2 8.4 207 91-306 546-787 (889)
28 COG4886 Leucine-rich repeat (L 99.2 1.5E-11 3.3E-16 128.2 6.3 182 85-285 112-296 (394)
29 KOG4658 Apoptotic ATPase [Sign 99.1 3.6E-11 7.8E-16 134.7 5.6 229 32-279 521-783 (889)
30 KOG3207 Beta-tubulin folding c 99.1 1.8E-11 3.9E-16 121.3 0.6 203 91-302 122-339 (505)
31 KOG1259 Nischarin, modulator o 99.0 9.2E-11 2E-15 111.0 1.2 224 56-301 178-411 (490)
32 KOG3207 Beta-tubulin folding c 98.9 1.2E-10 2.5E-15 115.6 -0.7 205 57-279 118-339 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 5.5E-10 1.2E-14 101.2 2.5 34 91-124 20-54 (175)
34 PF14580 LRR_9: Leucine-rich r 98.9 1E-09 2.2E-14 99.5 4.0 128 189-327 16-147 (175)
35 KOG1909 Ran GTPase-activating 98.9 4E-11 8.7E-16 115.9 -6.7 187 110-301 90-310 (382)
36 PLN03150 hypothetical protein; 98.7 2.2E-08 4.8E-13 109.9 7.7 105 145-254 419-526 (623)
37 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.2E-14 113.8 -1.9 215 58-300 70-288 (414)
38 PLN03150 hypothetical protein; 98.7 4.1E-08 8.8E-13 107.8 8.0 109 194-307 420-533 (623)
39 KOG0531 Protein phosphatase 1, 98.7 3.1E-09 6.8E-14 111.3 -0.8 190 91-300 73-266 (414)
40 KOG2120 SCF ubiquitin ligase, 98.6 8.9E-10 1.9E-14 104.4 -7.5 86 113-205 186-273 (419)
41 KOG1909 Ran GTPase-activating 98.5 1.8E-09 3.9E-14 104.6 -6.2 165 138-302 86-283 (382)
42 PRK15386 type III secretion pr 98.5 4.2E-07 9.2E-12 92.3 9.7 157 164-348 48-214 (426)
43 PRK15386 type III secretion pr 98.4 1.5E-06 3.2E-11 88.4 10.7 134 111-276 51-187 (426)
44 KOG1859 Leucine-rich repeat pr 98.3 3.3E-09 7.1E-14 111.3 -10.8 127 144-279 164-292 (1096)
45 PF13855 LRR_8: Leucine rich r 98.3 1.2E-06 2.5E-11 65.2 4.8 34 91-124 2-37 (61)
46 KOG2982 Uncharacterized conser 98.2 3.1E-07 6.8E-12 87.4 0.9 227 92-328 47-287 (418)
47 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3E-11 64.8 3.9 59 112-179 1-60 (61)
48 KOG2120 SCF ubiquitin ligase, 98.2 1.2E-08 2.5E-13 96.9 -9.5 177 90-299 185-373 (419)
49 KOG1859 Leucine-rich repeat pr 98.1 2.7E-08 6E-13 104.5 -8.7 128 113-257 165-293 (1096)
50 PF12799 LRR_4: Leucine Rich r 98.0 4.3E-06 9.3E-11 57.4 2.9 39 244-282 2-40 (44)
51 KOG2982 Uncharacterized conser 98.0 8.6E-07 1.9E-11 84.5 -1.7 79 214-295 198-285 (418)
52 COG5238 RNA1 Ran GTPase-activa 97.8 6.2E-06 1.3E-10 77.8 0.5 57 243-299 185-252 (388)
53 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 5E-10 53.7 2.8 42 266-308 1-42 (44)
54 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 66.7 6.2 80 215-300 42-124 (233)
55 KOG4579 Leucine-rich repeat (L 97.6 2E-06 4.2E-11 73.0 -4.8 61 241-301 75-135 (177)
56 KOG3665 ZYG-1-like serine/thre 97.6 1.2E-05 2.6E-10 88.5 -0.1 151 144-298 122-284 (699)
57 KOG4341 F-box protein containi 97.5 6.8E-07 1.5E-11 88.9 -9.9 61 213-276 318-382 (483)
58 KOG4579 Leucine-rich repeat (L 97.5 4E-06 8.7E-11 71.1 -4.4 108 91-209 28-140 (177)
59 KOG1644 U2-associated snRNP A' 97.4 0.00025 5.5E-09 64.4 5.8 58 112-179 42-99 (233)
60 KOG4341 F-box protein containi 97.3 7E-06 1.5E-10 81.8 -5.7 227 61-305 139-388 (483)
61 COG5238 RNA1 Ran GTPase-activa 97.3 2.5E-05 5.3E-10 73.8 -2.0 91 54-154 24-130 (388)
62 KOG3665 ZYG-1-like serine/thre 97.2 9.6E-05 2.1E-09 81.5 0.0 104 91-205 149-263 (699)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00056 1.2E-08 64.7 2.2 82 214-301 42-128 (260)
64 KOG2739 Leucine-rich acidic nu 96.6 0.0019 4.2E-08 61.1 3.4 40 166-205 63-104 (260)
65 PF13306 LRR_5: Leucine rich r 96.2 0.028 6E-07 48.1 8.4 106 51-177 3-112 (129)
66 KOG1947 Leucine rich repeat pr 95.6 0.0005 1.1E-08 73.4 -6.3 131 213-347 241-389 (482)
67 KOG2123 Uncharacterized conser 95.5 0.00059 1.3E-08 64.9 -5.1 58 213-276 39-98 (388)
68 KOG2123 Uncharacterized conser 95.5 0.0006 1.3E-08 64.9 -5.2 84 91-185 20-105 (388)
69 KOG1947 Leucine rich repeat pr 95.2 0.00093 2E-08 71.3 -5.9 196 142-347 186-414 (482)
70 PF00560 LRR_1: Leucine Rich R 95.0 0.0076 1.6E-07 34.4 0.3 17 268-284 2-18 (22)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.01 2.3E-07 33.8 0.7 22 244-265 1-22 (22)
72 PF13306 LRR_5: Leucine rich r 94.1 0.19 4.1E-06 42.9 7.2 36 140-177 8-44 (129)
73 PF07725 LRR_3: Leucine Rich R 93.8 0.041 8.9E-07 30.4 1.5 19 113-131 1-19 (20)
74 PF13504 LRR_7: Leucine rich r 93.7 0.038 8.2E-07 29.3 1.2 13 268-280 3-15 (17)
75 KOG4308 LRR-containing protein 93.5 0.00027 5.9E-09 74.7 -14.1 184 114-302 89-303 (478)
76 PF13504 LRR_7: Leucine rich r 93.2 0.054 1.2E-06 28.7 1.3 17 243-259 1-17 (17)
77 KOG4308 LRR-containing protein 91.5 0.00059 1.3E-08 72.2 -14.8 89 191-279 203-303 (478)
78 KOG3864 Uncharacterized conser 89.9 0.028 6.1E-07 51.4 -3.3 34 266-299 151-186 (221)
79 smart00370 LRR Leucine-rich re 89.6 0.26 5.7E-06 29.1 1.8 20 265-284 1-20 (26)
80 smart00369 LRR_TYP Leucine-ric 89.6 0.26 5.7E-06 29.1 1.8 20 265-284 1-20 (26)
81 KOG0473 Leucine-rich repeat pr 88.9 0.0094 2E-07 55.5 -7.2 87 211-303 38-125 (326)
82 KOG0473 Leucine-rich repeat pr 85.7 0.028 6.1E-07 52.5 -6.0 87 53-155 35-122 (326)
83 smart00370 LRR Leucine-rich re 85.3 0.64 1.4E-05 27.4 1.7 21 242-262 1-21 (26)
84 smart00369 LRR_TYP Leucine-ric 85.3 0.64 1.4E-05 27.4 1.7 21 242-262 1-21 (26)
85 KOG3864 Uncharacterized conser 83.4 0.35 7.7E-06 44.4 -0.0 90 104-201 92-185 (221)
86 smart00364 LRR_BAC Leucine-ric 79.4 1.2 2.7E-05 26.4 1.3 18 266-283 2-19 (26)
87 smart00364 LRR_BAC Leucine-ric 78.5 1.4 3E-05 26.2 1.4 17 91-107 3-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 65.6 5.1 0.00011 23.8 1.7 16 266-281 2-17 (26)
89 PF13516 LRR_6: Leucine Rich r 60.7 4.2 9.2E-05 23.3 0.8 14 266-279 2-15 (24)
90 smart00367 LRR_CC Leucine-rich 57.6 7.5 0.00016 22.8 1.5 16 288-303 1-16 (26)
91 smart00368 LRR_RI Leucine rich 47.6 15 0.00033 22.0 1.7 14 266-279 2-15 (28)
92 KOG3763 mRNA export factor TAP 45.4 10 0.00022 40.4 1.2 18 414-431 440-458 (585)
93 KOG3763 mRNA export factor TAP 33.9 17 0.00036 38.8 0.6 9 474-482 489-497 (585)
94 PF05725 FNIP: FNIP Repeat; I 24.5 1.4E+02 0.0031 19.9 3.8 10 88-97 10-19 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.5e-46 Score=431.90 Aligned_cols=475 Identities=27% Similarity=0.420 Sum_probs=323.7
Q ss_pred cCccccccccchhhhhhhcccCcccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCC-CCcceeeecCCccc
Q 041975 9 PDYIVWQSIAILSVSYFHLAVDKGSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISG-ENRCKVHHVRSMES 87 (543)
Q Consensus 9 ~~~~~w~~~~i~~~i~~vL~~~~~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~-~~~~~~~~~~~l~~ 87 (543)
++.++|+..+ |++||++++|+++|++|.+|.+.+.+..+...+|.+|++|++|.++.+... .......+|.++..
T Consensus 511 ~r~~l~~~~d----i~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~ 586 (1153)
T PLN03210 511 EREFLVDAKD----ICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY 586 (1153)
T ss_pred cceeEeCHHH----HHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhh
Confidence 4567787766 589999999999999999999999989999999999999999999876321 12245678899999
Q ss_pred ccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccc---------------cccccCccccCCcCCcEEecc
Q 041975 88 LFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDV---------------QLEELPSSIGNLSRLVTLDLR 152 (543)
Q Consensus 88 l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~---------------~l~~lp~~l~~l~~L~~L~L~ 152 (543)
+|++||+|+|.+|+++.+|..+.+.+|++|+|++|+++.+|.+. .+..+|. ++.+++|++|+|+
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 99899999999999999999999999999999999999998765 2344553 6667777777777
Q ss_pred ccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeecc---------------------CccccccCCCC
Q 041975 153 KCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVAN---------------------EIAISQVPSSI 211 (543)
Q Consensus 153 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~---------------------~~~i~~lp~~i 211 (543)
+|..+..+|..+.++++|+.|++++|..++.+|..+ ++++|+.|+++ +|.+..+|..+
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 777777777777777777777777777666666544 34444444443 33333343321
Q ss_pred CCC-------------------------------CCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCC-CCCcC
Q 041975 212 SCL-------------------------------NRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINC-NIIEL 258 (543)
Q Consensus 212 ~~l-------------------------------~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n-~l~~l 258 (543)
.+ ++|+.|++++|..... +|. +.++++|+.|++++| ++..+
T Consensus 745 -~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-----lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 745 -RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-----LPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred -cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-----cChhhhCCCCCCEEECCCCCCcCee
Confidence 11 2334444444433222 454 566667777777766 34445
Q ss_pred CccC--------------------CCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCCCCC----CcEE
Q 041975 259 PESL--------------------GQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPELPC----GSSV 314 (543)
Q Consensus 259 p~~l--------------------~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~----~~~l 314 (543)
|..+ ...++|+.|+|++|.++.+|.++..+++|+.|++++|+.+..+|.... ...+
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred CCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 5432 012456777777777888888899999999999999999998875333 2378
Q ss_pred eecCCCCCccccCCcccc------------cCCcceeeecccCCCChhhhHHHHHHHHHHHHHHhhhhccccccCCCCCC
Q 041975 315 YARHCTSLETLSNLSTLF------------KPLCQKFDFCNCFKLNRNEVREIVEEALKKIQVLATWWKEQDLEDDHHPP 382 (543)
Q Consensus 315 ~~~~c~~L~~l~~~~~~~------------~~~~~~~~~~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (543)
++.+|++|+.++...... .+....+.|.+|++| .+++. ++. .. .
T Consensus 899 ~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L----~~~a~------l~~------------~~--~ 954 (1153)
T PLN03210 899 DFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL----DQEAL------LQQ------------QS--I 954 (1153)
T ss_pred ecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCC----Cchhh------hcc------------cc--c
Confidence 899999998776432110 011133578899999 33321 010 00 1
Q ss_pred CceEEcCCCCCCCCccccCCCcEEE-EEcCCCCCCCCcceeEEEEEeeCCC--CCCCcceeeeeEEEEeCCCCeEEEEEe
Q 041975 383 RGSIWYPGSEIPEWFSFQSMGSSVT-LELPPGWFYNNFVGFALCAIFPEFR--GDTRNLLVDSEFKLKTKDGDWHVATYL 459 (543)
Q Consensus 383 ~~~~~~pg~~iP~Wf~~~~~g~si~-i~lp~~~~~~~~~g~~~c~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (543)
...+++||.++|+||.||+.|++++ |.+|+.|+...|.||++|+|++-.. .......+.+.|.+....|+.+.....
T Consensus 955 ~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 1034 (1153)
T PLN03210 955 FKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQ 1034 (1153)
T ss_pred ceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccccCCC
Confidence 2257899999999999999999998 9999999988899999999994211 112234456667777766765532221
Q ss_pred ceeecccCCCCCCCCCCeEEEEecCCCc--cC--CCC--CCccEEEEEEEcccccCCCCCeEEEeeeeEEeeecCCC
Q 041975 460 LFVWNEDFGVNSSLESDHVLLGYDFSMD--LD--GLG--GSDKACIQFYIGNYLDKRTEGFDVKKCGAHLIYAQDPS 530 (543)
Q Consensus 460 ~~~~~~~~~~~~~~~sdh~~~~y~~~~~--~~--~~~--~~~~~~~~f~~~~~~~~~~~~~~vk~cGv~l~~~~~~~ 530 (543)
...+ ......+|++++... .+ .+ ... ..+++.++|.|... ...++||+||||++|+++..
T Consensus 1035 ~~~~------~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1035 PHVF------SVTKKGSHLVIFDCC-FPLNEDNAPLAELNYDHVDIQFRLTNK----NSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred ceeE------eeeccccceEEeccc-ccccccccchhccCCceeeEEEEEecC----CCCeEEEeeeEEEeccCCCc
Confidence 1111 011346777766310 11 11 011 12566677877542 23479999999999976554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2e-25 Score=258.54 Aligned_cols=251 Identities=24% Similarity=0.309 Sum_probs=176.2
Q ss_pred cccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcc-cccccceEEEECCCCCC-CCCCCCC
Q 041975 33 SEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSME-SLFNEQRYFHWDGYPLK-TLPSKIS 110 (543)
Q Consensus 33 ~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~-~l~~~Lr~L~l~~~~l~-~lp~~~~ 110 (543)
..+|..+.|..+.+. . ..+.+|..+++|+.|++++|. ....+|..+. .+. +||+|++++|.+. .+|. ..
T Consensus 68 ~~~v~~L~L~~~~i~-~-~~~~~~~~l~~L~~L~Ls~n~-----~~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~-~~ 138 (968)
T PLN00113 68 SSRVVSIDLSGKNIS-G-KISSAIFRLPYIQTINLSNNQ-----LSGPIPDDIFTTSS-SLRYLNLSNNNFTGSIPR-GS 138 (968)
T ss_pred CCcEEEEEecCCCcc-c-cCChHHhCCCCCCEEECCCCc-----cCCcCChHHhccCC-CCCEEECcCCccccccCc-cc
Confidence 357777777766553 2 236789999999999999987 4556777665 554 8999999998875 3443 45
Q ss_pred CCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 111 PEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 111 l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
+++|++|+|++|.+. ..+|..++.+++|++|+|++|...+.+|..++++++|++|++++|.+.+.+|..+++
T Consensus 139 l~~L~~L~Ls~n~~~--------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 210 (968)
T PLN00113 139 IPNLETLDLSNNMLS--------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210 (968)
T ss_pred cCCCCEEECcCCccc--------ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC
Confidence 778888888888876 567777788888888888877666677777777888888888887777777777777
Q ss_pred CCCCceeeccCcccc-ccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCC
Q 041975 191 LGSLKNMVANEIAIS-QVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPS 267 (543)
Q Consensus 191 l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~ 267 (543)
+++|++|++++|.+. .+|..+.++++|+.|++++|.+... +|. +..+++|+.|++++|++.+ +|..+..+++
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-----IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc-----cChhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 778888887777776 5677777777777777777766543 444 5566666666666666654 5555666666
Q ss_pred CCeEecCCCCCc-cCCccccCCCCCCEEecccccccccC
Q 041975 268 LKYLNLEENNFE-KIPSNIKQVSKLSLLILDNWKRFLSL 305 (543)
Q Consensus 268 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~l 305 (543)
|+.|++++|.+. .+|..+.++++|+.|++++|.....+
T Consensus 286 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 666666666555 45555555666666666665544333
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=8.6e-24 Score=244.91 Aligned_cols=223 Identities=23% Similarity=0.320 Sum_probs=99.2
Q ss_pred CCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCC-CCCCCC-CCCCeeEEEcCCCCcccccccccccc
Q 041975 58 KMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLK-TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEE 135 (543)
Q Consensus 58 ~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~ 135 (543)
.+++|++|++++|. ....+|..+..++ +|++|++++|.+. .+|..+ ++++|++|+|++|.+. ..
T Consensus 138 ~l~~L~~L~Ls~n~-----~~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--------~~ 203 (968)
T PLN00113 138 SIPNLETLDLSNNM-----LSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV--------GQ 203 (968)
T ss_pred ccCCCCEEECcCCc-----ccccCChHHhcCC-CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc--------Cc
Confidence 34455555555554 3334444444443 5555555555542 344443 4555555555555543 33
Q ss_pred cCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCcccc-ccCCCCCCC
Q 041975 136 LPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAIS-QVPSSISCL 214 (543)
Q Consensus 136 lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l 214 (543)
+|..++++++|++|+|++|...+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..+.++
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc
Confidence 4444444444444444444444444444444444444444444444444444444444444444444443 334444444
Q ss_pred CCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCc-cCCccccCCCCC
Q 041975 215 NRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFE-KIPSNIKQVSKL 291 (543)
Q Consensus 215 ~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 291 (543)
++|+.|++++|.+... +|. +..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..++.+++|
T Consensus 284 ~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 284 QKLISLDLSDNSLSGE-----IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred cCcCEEECcCCeeccC-----CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 4444444444443322 222 3333444444444443333 3333333444444444444333 333333333333
Q ss_pred CEEecccc
Q 041975 292 SLLILDNW 299 (543)
Q Consensus 292 ~~L~L~~~ 299 (543)
+.|++++|
T Consensus 359 ~~L~Ls~n 366 (968)
T PLN00113 359 TVLDLSTN 366 (968)
T ss_pred cEEECCCC
Confidence 33333333
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.5e-24 Score=218.37 Aligned_cols=258 Identities=19% Similarity=0.296 Sum_probs=165.4
Q ss_pred cEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC--CCC
Q 041975 35 AIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI--SPE 112 (543)
Q Consensus 35 ~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~ 112 (543)
.++++.+..++++...|+++ +-+|..|.+|++++|+ ....|..+.+- +++-+|++++|++.+||... ++.
T Consensus 79 ~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNq------L~EvP~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQ------LREVPTNLEYA-KNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhHHHhhhccccccCCCCch-hcccccceeeecchhh------hhhcchhhhhh-cCcEEEEcccCccccCCchHHHhhH
Confidence 34444444444444444333 3356666666666664 23445555554 35666666666666666543 555
Q ss_pred CeeEEEcCCCCcccccccc----------------------------------------cccccCccccCCcCCcEEecc
Q 041975 113 HLVSLEMPNSNIEQLWNDV----------------------------------------QLEELPSSIGNLSRLVTLDLR 152 (543)
Q Consensus 113 ~L~~L~L~~n~l~~l~~~~----------------------------------------~l~~lp~~l~~l~~L~~L~L~ 152 (543)
.|-+|||++|+++.+...+ -+..+|.++..+.+|+.+||+
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 5556666666553222211 233455666666666666666
Q ss_pred ccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCC
Q 041975 153 KCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQM 232 (543)
Q Consensus 153 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~ 232 (543)
.| .+..+|..+.++++|+.|+||+|. +.++.-..+...+|++|+++.|+++.+|..+..+++|+.|.+.+|++.-.
T Consensus 231 ~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe-- 306 (1255)
T KOG0444|consen 231 EN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE-- 306 (1255)
T ss_pred cc-CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc--
Confidence 54 555666666666666666666654 33344445556666777777777777777777777777777777776543
Q ss_pred CCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCC
Q 041975 233 GLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 233 ~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 306 (543)
.+|+ ++.+.+|+.+..++|.+.-+|+++..+..|+.|.|+.|.+.++|+.+.-++.|+.||+..|+++.--|
T Consensus 307 --GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 307 --GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred --CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 3777 77888888888888887778888888888888888888888888888888888888888888776544
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-23 Score=211.52 Aligned_cols=232 Identities=19% Similarity=0.192 Sum_probs=127.2
Q ss_pred eccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCccc
Q 041975 49 ICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQ 126 (543)
Q Consensus 49 ~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~ 126 (543)
..+...+|..+.+|-+|.++.|. ....-+..|..+| +|+.|++..|.++.+.. .| +++.|+.|.|..|+|.+
T Consensus 186 t~l~~~~F~~lnsL~tlkLsrNr-----ittLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 186 TTLETGHFDSLNSLLTLKLSRNR-----ITTLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred cccccccccccchheeeecccCc-----ccccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 34444455555555555555543 1111122334444 55555555555443321 23 45555555555555543
Q ss_pred ccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccc
Q 041975 127 LWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQ 206 (543)
Q Consensus 127 l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~ 206 (543)
+.+| .|..+.++++|+|+.|.....-..++.+|++|+.|++|.|.+...-++.....++|+.|+|+.|.+++
T Consensus 260 L~DG--------~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 260 LDDG--------AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred ccCc--------ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 3332 35556666666666653333333445566666666666666555555555666666666666666665
Q ss_pred cCC-CCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCc----CCccCCCCCCCCeEecCCCCCc
Q 041975 207 VPS-SISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIE----LPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 207 lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~----lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
+++ ++..|..|+.|.|+.|.+.. +.. +.++++|++|||++|.++. -...+..+++|+.|.+.||++.
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~------l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDH------LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHH------HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 543 45555666666666666443 322 5566666666666666553 2233455666777777777776
Q ss_pred cCC-ccccCCCCCCEEeccccc
Q 041975 280 KIP-SNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 280 ~lp-~~l~~l~~L~~L~L~~~~ 300 (543)
.+| ..+.+++.|++|+|.+|.
T Consensus 406 ~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ecchhhhccCcccceecCCCCc
Confidence 666 446666677777776664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.9e-24 Score=219.20 Aligned_cols=254 Identities=24% Similarity=0.330 Sum_probs=155.6
Q ss_pred HhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCccccccccccc
Q 041975 56 FTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLE 134 (543)
Q Consensus 56 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~ 134 (543)
++.++.||.+.+.+|+. ....+|..+..+- .|..||+++|.++..|... ..+++-+|+|++|+|+
T Consensus 74 Ls~Lp~LRsv~~R~N~L----KnsGiP~diF~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie--------- 139 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNL----KNSGIPTDIFRLK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE--------- 139 (1255)
T ss_pred hccchhhHHHhhhcccc----ccCCCCchhcccc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccc---------
Confidence 33444445444444432 2234566666663 6777777777777777766 6677777777777774
Q ss_pred ccCcc-ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCC-------------------------CcCCccc
Q 041975 135 ELPSS-IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKL-------------------------EKLPEEI 188 (543)
Q Consensus 135 ~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~-------------------------~~~p~~l 188 (543)
.+|.+ +.+|+.|-+|||++| .+..+|+.+.+|..|++|+|++|.+. ..+|.++
T Consensus 140 tIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred cCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 55543 345666666666655 56666666666666666666665431 2456667
Q ss_pred CCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCC-----------------CCCCCc-cccCCCCCeEec
Q 041975 189 GNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQM-----------------GLKLPI-LFQSQILENLSL 250 (543)
Q Consensus 189 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~-----------------~~~lp~-~~~l~~L~~L~L 250 (543)
..|.+|+.++++.|.+..+|..+.++++|+.|+|++|+++.-.. ...+|. +..++.|+.|.+
T Consensus 219 d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence 77777777777777777777777777777777777777654211 112444 455555666666
Q ss_pred cCCCCC--cCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCC----CCCCcEEeecCCCCCcc
Q 041975 251 INCNII--ELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPE----LPCGSSVYARHCTSLET 324 (543)
Q Consensus 251 s~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----lp~~~~l~~~~c~~L~~ 324 (543)
.+|+++ ++|.+++.+..|+.+..++|.+.-+|+++..+.+|+.|.|+.|+. ..+|+ +|..-.|+++.-+.|.-
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccce-eechhhhhhcCCcceeeccCCcCccC
Confidence 655444 266666666666666666666666666667777777777776643 34453 23333666666666553
Q ss_pred c
Q 041975 325 L 325 (543)
Q Consensus 325 l 325 (543)
=
T Consensus 378 P 378 (1255)
T KOG0444|consen 378 P 378 (1255)
T ss_pred C
Confidence 3
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.9e-19 Score=209.88 Aligned_cols=130 Identities=25% Similarity=0.445 Sum_probs=96.9
Q ss_pred CCCEEeccCCCCCCcCCcccCCCCCCceeeccCc-cccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCe
Q 041975 169 SLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEI-AISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILEN 247 (543)
Q Consensus 169 ~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~ 247 (543)
+|+.|++++|.....+|..++++++|+.|++++| .++.+|..+ ++++|+.|++++|..... +|.. ..+|+.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~-----~p~~--~~nL~~ 850 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT-----FPDI--STNISD 850 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc-----cccc--ccccCE
Confidence 4555666666556666666666666666666654 345566554 566666666666654433 3332 357899
Q ss_pred EeccCCCCCcCCccCCCCCCCCeEecCCC-CCccCCccccCCCCCCEEecccccccccCC
Q 041975 248 LSLINCNIIELPESLGQLPSLKYLNLEEN-NFEKIPSNIKQVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 248 L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 306 (543)
|+|++|.++++|.++..+++|+.|+|++| ++..+|..+..+++|+.|++++|..+..++
T Consensus 851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred eECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 99999999999999999999999999996 788999889999999999999999887554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=3.8e-23 Score=200.53 Aligned_cols=223 Identities=26% Similarity=0.346 Sum_probs=165.7
Q ss_pred hHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCcccccccc
Q 041975 53 PSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDV 131 (543)
Q Consensus 53 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~ 131 (543)
+.+++++..++.|+.++|. ...+|..+..++ +|+.|+.+.|.++++|+.+ .+..|..|+..+|++
T Consensus 84 p~aig~l~~l~~l~vs~n~------ls~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i------- 149 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNK------LSELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQI------- 149 (565)
T ss_pred CHHHHHHHHHHHhhcccch------HhhccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhcccccc-------
Confidence 4456666666666666663 445666666665 6777777777777776665 666777777777776
Q ss_pred cccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCC
Q 041975 132 QLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSI 211 (543)
Q Consensus 132 ~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i 211 (543)
..+|..++.+.+|..|++.+| .++.+|+..-+++.|++||... +.++.+|+.++.|.+|..|++..|++..+| .|
T Consensus 150 --~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef 224 (565)
T KOG0472|consen 150 --SSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLP-EF 224 (565)
T ss_pred --ccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCC-CC
Confidence 467777777888888888776 5555665555577888888777 457777888888888888888888888887 67
Q ss_pred CCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCC
Q 041975 212 SCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVS 289 (543)
Q Consensus 212 ~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 289 (543)
..+..|+.|+++.|.+.. +|. ...+++|..|||.+|+++++|..+.-+.+|++||+++|.++.+|.+++++
T Consensus 225 ~gcs~L~Elh~g~N~i~~------lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl- 297 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEM------LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL- 297 (565)
T ss_pred CccHHHHHHHhcccHHHh------hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-
Confidence 778888888887777655 666 56788888888888888888888888888888888888888888888888
Q ss_pred CCCEEecccccc
Q 041975 290 KLSLLILDNWKR 301 (543)
Q Consensus 290 ~L~~L~L~~~~~ 301 (543)
.|+.|.+.+|+.
T Consensus 298 hL~~L~leGNPl 309 (565)
T KOG0472|consen 298 HLKFLALEGNPL 309 (565)
T ss_pred eeeehhhcCCch
Confidence 888888888863
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.9e-20 Score=187.16 Aligned_cols=245 Identities=20% Similarity=0.147 Sum_probs=128.5
Q ss_pred EeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC--CCCCeeEE
Q 041975 40 SLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI--SPEHLVSL 117 (543)
Q Consensus 40 ~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L 117 (543)
.||+++++.-++....|.++++|+.+++.+|. ...+|....... +|+.|++.+|.+.++.+.- .++.|+.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~------Lt~IP~f~~~sg-hl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE------LTRIPRFGHESG-HLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccch------hhhccccccccc-ceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 46777776667778888999999999998874 334444333332 5555555555555544332 34555555
Q ss_pred EcCCCCcccccccccccccCc-cccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCce
Q 041975 118 EMPNSNIEQLWNDVQLEELPS-SIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKN 196 (543)
Q Consensus 118 ~L~~n~l~~l~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~ 196 (543)
||+.|.|+ ++|. ++..-.++++|+|++|.....-...|..+.+|.+|.|+.|.+...-+..|.++++|+.
T Consensus 155 DLSrN~is---------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 155 DLSRNLIS---------EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhchhh---------cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 55555553 2221 2333345555555554322222233444455555555554433333333444555555
Q ss_pred eeccCcccccc-CCCCCCCCCCcEEEccCcCCCCCCCC------------------CCCCc--cccCCCCCeEeccCCCC
Q 041975 197 MVANEIAISQV-PSSISCLNRVELLSFAGCKGRPPQMG------------------LKLPI--LFQSQILENLSLINCNI 255 (543)
Q Consensus 197 L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~------------------~~lp~--~~~l~~L~~L~Ls~n~l 255 (543)
|+|..|.|+.+ -..|..|++|+.|.|..|.+..-..+ ..+.. +.++..|+.|+||+|.|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 55555554433 22344444444444444443321000 00222 45566666666666666
Q ss_pred Cc-CCccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEEeccccc
Q 041975 256 IE-LPESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 256 ~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~ 300 (543)
.. -++.....++|+.|+|+.|+++.++ ..+..|+.|+.|+|++|.
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 65 3455555666666666666666655 345566666666666664
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=5.6e-22 Score=192.46 Aligned_cols=237 Identities=25% Similarity=0.316 Sum_probs=206.1
Q ss_pred EEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCCeeEE
Q 041975 39 ISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSL 117 (543)
Q Consensus 39 i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L 117 (543)
..++.+.+....+ ...+.++..|.+|.+.+|. ...+|.++..+- .++.|+.++|.+..+|..+ .+..|+.|
T Consensus 48 ~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~------l~~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 48 QKLILSHNDLEVL-REDLKNLACLTVLNVHDNK------LSQLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKL 119 (565)
T ss_pred hhhhhccCchhhc-cHhhhcccceeEEEeccch------hhhCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhh
Confidence 3344555532233 4567888889999998884 567788888886 8999999999999999877 88899999
Q ss_pred EcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCcee
Q 041975 118 EMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNM 197 (543)
Q Consensus 118 ~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L 197 (543)
+.++|.+ .++|++++.+..|+.|+..+| .+.++|.++.++.+|..|++.+|.. ..+|+..-+|+.|++|
T Consensus 120 ~~s~n~~---------~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 120 DCSSNEL---------KELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHL 188 (565)
T ss_pred hccccce---------eecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhc
Confidence 9999988 588999999999999999987 7788998899999999999999764 4555555559999999
Q ss_pred eccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCC-CCCCCCeEecCCC
Q 041975 198 VANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLG-QLPSLKYLNLEEN 276 (543)
Q Consensus 198 ~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~n 276 (543)
+...|-++.+|+.++.+.+|..|++..|++.. +|+|.++..|++|+++.|.+..+|.... ++++|..|||..|
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~------lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRF------LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhccccc------CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence 99999999999999999999999999999887 8999999999999999999999998877 8999999999999
Q ss_pred CCccCCccccCCCCCCEEeccccc
Q 041975 277 NFEKIPSNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 277 ~l~~lp~~l~~l~~L~~L~L~~~~ 300 (543)
+++++|+.+.-+.+|.+||+++|.
T Consensus 263 klke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 263 KLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred ccccCchHHHHhhhhhhhcccCCc
Confidence 999999999999999999999984
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=1.4e-16 Score=174.00 Aligned_cols=209 Identities=19% Similarity=0.231 Sum_probs=107.2
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccc----------
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWN---------- 129 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~---------- 129 (543)
++|+.|.+.+|.+ ..+|. ++++|++|++++|.++.+|.. +++|+.|++++|.++.+..
T Consensus 222 ~~L~~L~L~~N~L------t~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNL------TSLPA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcC------CCCCC----CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEEC
Confidence 3688888887752 22442 234788888888888877753 4567777777776653211
Q ss_pred -cccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccC
Q 041975 130 -DVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVP 208 (543)
Q Consensus 130 -~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp 208 (543)
+..+..+|. .+++|+.|+|++| .+..+|... .+|+.|++++|.+ ..+|.. ..+|+.|++++|.++.+|
T Consensus 290 s~N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 290 FGNQLTSLPV---LPPGLQELSVSDN-QLASLPALP---SELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQLASLP 358 (788)
T ss_pred cCCccccccc---cccccceeECCCC-ccccCCCCc---ccccccccccCcc-cccccc---ccccceEecCCCccCCCC
Confidence 001123332 1356777777766 344444321 2344444444332 223321 134556666666665555
Q ss_pred CCCCC-----------------CCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeE
Q 041975 209 SSISC-----------------LNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYL 271 (543)
Q Consensus 209 ~~i~~-----------------l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 271 (543)
....+ ..+|+.|++++|.+.. +|.. .++|+.|++++|+++.+|.. ..+|+.|
T Consensus 359 ~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~------LP~l--~s~L~~LdLS~N~LssIP~l---~~~L~~L 427 (788)
T PRK15387 359 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS------LPVL--PSELKELMVSGNRLTSLPML---PSGLLSL 427 (788)
T ss_pred CCCcccceehhhccccccCcccccccceEEecCCcccC------CCCc--ccCCCEEEccCCcCCCCCcc---hhhhhhh
Confidence 32211 1234444444444332 2321 13455555555555555532 2345556
Q ss_pred ecCCCCCccCCccccCCCCCCEEeccccccc
Q 041975 272 NLEENNFEKIPSNIKQVSKLSLLILDNWKRF 302 (543)
Q Consensus 272 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 302 (543)
++++|+++.+|..+.++++|+.|+|++|+..
T Consensus 428 ~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 428 SVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 6666666666655666666666666666543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=6.9e-19 Score=186.96 Aligned_cols=197 Identities=21% Similarity=0.275 Sum_probs=108.3
Q ss_pred CCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccC
Q 041975 145 RLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAG 224 (543)
Q Consensus 145 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~ 224 (543)
+|++++++.| .+..+|+.++.+.+|+.+++.+|.+ ..+|..+..+++|+.|.+..|.++.+|.....+++|++|+|..
T Consensus 242 nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchh-hhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 4555555554 4455565566666666666666543 3334334444444444444444444444333344444444433
Q ss_pred cCCCCCCC---------------------------------------------CCCCCccccCCCCCeEeccCCCCCcCC
Q 041975 225 CKGRPPQM---------------------------------------------GLKLPILFQSQILENLSLINCNIIELP 259 (543)
Q Consensus 225 ~~~~~~~~---------------------------------------------~~~lp~~~~l~~L~~L~Ls~n~l~~lp 259 (543)
|.+..... ...+|.+.++.+|+.|+|++|++..+|
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 33221100 123566778888888888888888877
Q ss_pred c-cCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCCCC---CCcEEeecCCCCCccccCCcccccCC
Q 041975 260 E-SLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPELP---CGSSVYARHCTSLETLSNLSTLFKPL 335 (543)
Q Consensus 260 ~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp---~~~~l~~~~c~~L~~l~~~~~~~~~~ 335 (543)
+ .+.++..|++|+||||.++.+|..+..++.|+.|...+|. +..+|++. ....+++ +|..|..+......-.+.
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDL-SCNNLSEVTLPEALPSPN 477 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEec-ccchhhhhhhhhhCCCcc
Confidence 5 4567888888888888888888777777777777776663 34455432 2223443 344444443332221234
Q ss_pred cceeeecccC
Q 041975 336 CQKFDFCNCF 345 (543)
Q Consensus 336 ~~~~~~~~c~ 345 (543)
++.++++.-.
T Consensus 478 LkyLdlSGN~ 487 (1081)
T KOG0618|consen 478 LKYLDLSGNT 487 (1081)
T ss_pred cceeeccCCc
Confidence 5555554443
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2e-19 Score=155.96 Aligned_cols=157 Identities=24% Similarity=0.425 Sum_probs=82.8
Q ss_pred cceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
+++.|-+++|.++.+|+.+ .+.+|+.|++.+|+| .++|.+++.+++|+.|+++-| .+..+|.+|+.++.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi---------e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI---------EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPA 103 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchh---------hhcChhhhhchhhhheecchh-hhhcCccccCCCch
Confidence 4555555555555555554 555555555555555 355555555555555555544 44455555555555
Q ss_pred CCEEeccCCCCCC-cCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeE
Q 041975 170 LESLYLSGCLKLE-KLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENL 248 (543)
Q Consensus 170 L~~L~Ls~~~~~~-~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L 248 (543)
|++||+++|+..+ .+|..|..|+.|+.|++++|.+.-+|..++++++|+.|.+.+|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn----------------------- 160 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN----------------------- 160 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-----------------------
Confidence 5555555544332 3444454555555555555555555544444444444443333
Q ss_pred eccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccc
Q 041975 249 SLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNI 285 (543)
Q Consensus 249 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 285 (543)
.+.++|..++.+..|++|.+.||.++.+|..+
T Consensus 161 -----dll~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 161 -----DLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred -----chhhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 33345555555566666666666666555433
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.5e-19 Score=153.75 Aligned_cols=157 Identities=20% Similarity=0.291 Sum_probs=135.5
Q ss_pred HHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCcccccccccc
Q 041975 55 IFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQL 133 (543)
Q Consensus 55 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l 133 (543)
.+-.|.++..|.+++|. ....|..+..+- +|++|++.+|+++.+|..+ .+++|+.|+++-|++
T Consensus 28 gLf~~s~ITrLtLSHNK------l~~vppnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--------- 91 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK------LTVVPPNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--------- 91 (264)
T ss_pred cccchhhhhhhhcccCc------eeecCCcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecchhhh---------
Confidence 34577888999999995 456788899985 9999999999999999988 899999999999988
Q ss_pred cccCccccCCcCCcEEeccccccCe-ecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCC
Q 041975 134 EELPSSIGNLSRLVTLDLRKCLRLK-KVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSIS 212 (543)
Q Consensus 134 ~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~ 212 (543)
..+|..||.++.|+.|||.+|...+ .+|..|..++.|+.|+++.|. .+.+|..++++++|+.|.+.+|.+-++|..++
T Consensus 92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig 170 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIG 170 (264)
T ss_pred hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHH
Confidence 5889999999999999999985543 589889999999999999965 67889999999999999999999999998888
Q ss_pred CCCCCcEEEccCcCCC
Q 041975 213 CLNRVELLSFAGCKGR 228 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~ 228 (543)
.++.|+.|.+.+|++.
T Consensus 171 ~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHHHhcccceee
Confidence 7777666666665543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=7.7e-17 Score=177.06 Aligned_cols=179 Identities=20% Similarity=0.320 Sum_probs=84.5
Q ss_pred ccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 90 NEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
++|+.|++++|.++.+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|++| .+..+|..+. ++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~Lt---------sLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~ 263 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLT---------SIPATLP--DTIQEMELSIN-RITELPERLP--SA 263 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccc---------cCChhhh--ccccEEECcCC-ccCcCChhHh--CC
Confidence 355555555555555554332 35555555555553 3333221 24555555555 2334444332 34
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEe
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLS 249 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~ 249 (543)
|+.|++++|++. .+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.+.. +|.. ..++|+.|+
T Consensus 264 L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~------LP~~-l~~sL~~L~ 331 (754)
T PRK15370 264 LQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA------LPET-LPPGLKTLE 331 (754)
T ss_pred CCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc------CCcc-ccccceecc
Confidence 555555544322 3444332 345555555555555544332 245555555554433 2320 113455555
Q ss_pred ccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccc
Q 041975 250 LINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 250 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 299 (543)
+++|.++.+|..+. ++|+.|++++|+++.+|..+. ++|+.|+|++|
T Consensus 332 Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N 377 (754)
T PRK15370 332 AGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRN 377 (754)
T ss_pred ccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCC
Confidence 55555555554332 455555555555555554332 35555555555
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=7.4e-17 Score=177.21 Aligned_cols=205 Identities=19% Similarity=0.339 Sum_probs=158.4
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCcc
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSS 139 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~ 139 (543)
++|+.|++++|.+ ..+|..+. .+|++|++++|.++.+|..+ ..+|+.|+|++|+++ .+|..
T Consensus 199 ~~L~~L~Ls~N~L------tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~---------~LP~~ 259 (754)
T PRK15370 199 EQITTLILDNNEL------KSLPENLQ---GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRIT---------ELPER 259 (754)
T ss_pred cCCcEEEecCCCC------CcCChhhc---cCCCEEECCCCccccCChhh-hccccEEECcCCccC---------cCChh
Confidence 5799999999862 24565442 48999999999999998755 357999999999984 56665
Q ss_pred ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcE
Q 041975 140 IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVEL 219 (543)
Q Consensus 140 l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 219 (543)
+. .+|+.|++++| .+..+|..+. ++|++|++++|++. .+|..+. .+|+.|++++|.++.+|..+. ++|+.
T Consensus 260 l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~ 329 (754)
T PRK15370 260 LP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKT 329 (754)
T ss_pred Hh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcccc--cccee
Confidence 53 58999999987 5667887664 58999999998654 5665543 478899999999988886553 68999
Q ss_pred EEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEeccc
Q 041975 220 LSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDN 298 (543)
Q Consensus 220 L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 298 (543)
|++++|.+.. +|. + .++|+.|++++|+++.+|..+. ++|+.|+|++|+++.+|..+. ..|+.|++++
T Consensus 330 L~Ls~N~Lt~------LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 330 LEAGENALTS------LPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASR 397 (754)
T ss_pred ccccCCcccc------CChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhcc
Confidence 9999988765 554 3 2689999999999988887653 689999999999998887664 3688899999
Q ss_pred ccccccCC
Q 041975 299 WKRFLSLP 306 (543)
Q Consensus 299 ~~~l~~lp 306 (543)
|+. ..+|
T Consensus 398 N~L-~~LP 404 (754)
T PRK15370 398 NNL-VRLP 404 (754)
T ss_pred CCc-ccCc
Confidence 854 4555
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=3.1e-18 Score=182.05 Aligned_cols=270 Identities=22% Similarity=0.296 Sum_probs=208.8
Q ss_pred cEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCC
Q 041975 35 AIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEH 113 (543)
Q Consensus 35 ~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~ 113 (543)
.|+-..||++++....+ +..+..+.+|+.|+++.|. ....|...... ++|++|.+.+|.+..+|..+ .+++
T Consensus 44 ~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~------i~~vp~s~~~~-~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNY------IRSVPSSCSNM-RNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eeeeEEeeccccccccC-CchhhhHHHHhhcccchhh------HhhCchhhhhh-hcchhheeccchhhcCchhHHhhhc
Confidence 55556778888765555 5677888899999999884 34456666666 49999999999999999988 8999
Q ss_pred eeEEEcCCCCcccccccc--------------------------------------------------------------
Q 041975 114 LVSLEMPNSNIEQLWNDV-------------------------------------------------------------- 131 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~-------------------------------------------------------------- 131 (543)
|++|++++|++..+....
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 999999999876543322
Q ss_pred --------------------------------------------------------cccccCccccCCcCCcEEeccccc
Q 041975 132 --------------------------------------------------------QLEELPSSIGNLSRLVTLDLRKCL 155 (543)
Q Consensus 132 --------------------------------------------------------~l~~lp~~l~~l~~L~~L~L~~~~ 155 (543)
.+..+|+.++.+.+|+.|+...|
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N- 274 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN- 274 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccch-
Confidence 56778888888999999999887
Q ss_pred cCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCC--------------------------
Q 041975 156 RLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPS-------------------------- 209 (543)
Q Consensus 156 ~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~-------------------------- 209 (543)
.+..+|..+...++|+.|.+..|. +..+|+..+.+++|++|++..|.+..+|.
T Consensus 275 ~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 275 RLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred hHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 557888888888899999888865 66778888888899999888887665443
Q ss_pred ------------------------CCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCccCC
Q 041975 210 ------------------------SISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPESLG 263 (543)
Q Consensus 210 ------------------------~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~~l~ 263 (543)
.+.+.++|+.|+|++|++.. +|. +.+++.|++|+||+|.++.+|..+.
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~------fpas~~~kle~LeeL~LSGNkL~~Lp~tva 427 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS------FPASKLRKLEELEELNLSGNKLTTLPDTVA 427 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc------CCHHHHhchHHhHHHhcccchhhhhhHHHH
Confidence 12344567888888887665 777 8888889999999999999998888
Q ss_pred CCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccc-cCC-CCC-CCc-EEeecCCCC
Q 041975 264 QLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFL-SLP-ELP-CGS-SVYARHCTS 321 (543)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp-~lp-~~~-~l~~~~c~~ 321 (543)
.++.|++|...+|++...| .+.+++.|+.+|++.|..-. .+| .+| +.+ +|++.+-+.
T Consensus 428 ~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 9999999999999999888 78888999999998885432 222 234 333 666655443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=2.5e-15 Score=164.37 Aligned_cols=212 Identities=22% Similarity=0.247 Sum_probs=119.5
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCcc
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSS 139 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~ 139 (543)
.+-..|+++++. . ..+|..+ +.+|+.|++.+|.++.+|.. +++|++|+|++|+|+. +|..
T Consensus 201 ~~~~~LdLs~~~-----L-tsLP~~l---~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lts---------LP~l 260 (788)
T PRK15387 201 NGNAVLNVGESG-----L-TTLPDCL---PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS---------LPVL 260 (788)
T ss_pred CCCcEEEcCCCC-----C-CcCCcch---hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCc---------ccCc
Confidence 446678888875 2 3567654 34899999999999999963 6899999999999963 3431
Q ss_pred ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCC------
Q 041975 140 IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISC------ 213 (543)
Q Consensus 140 l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~------ 213 (543)
.++|+.|++++| .+..+|.. .++|+.|++++|.+ ..+|.. +++|+.|++++|.++.+|.....
T Consensus 261 ---p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N~L-t~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~L 329 (788)
T PRK15387 261 ---PPGLLELSIFSN-PLTHLPAL---PSGLCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWA 329 (788)
T ss_pred ---ccccceeeccCC-chhhhhhc---hhhcCEEECcCCcc-cccccc---ccccceeECCCCccccCCCCccccccccc
Confidence 245666666665 34444442 23455555655442 234432 34555556655555554432111
Q ss_pred -----------CCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCC
Q 041975 214 -----------LNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIP 282 (543)
Q Consensus 214 -----------l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 282 (543)
..+|+.|++++|.+.. +|.+ ..+|+.|++++|.++.+|.. ..+|+.|++++|+++.+|
T Consensus 330 s~N~L~~LP~lp~~Lq~LdLS~N~Ls~------LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 330 YNNQLTSLPTLPSGLQELSVSDNQLAS------LPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP 398 (788)
T ss_pred ccCccccccccccccceEecCCCccCC------CCCC--CcccceehhhccccccCccc---ccccceEEecCCcccCCC
Confidence 1245555555554443 3321 13445555555555554432 235666666666666555
Q ss_pred ccccCCCCCCEEecccccccccCCCCCCCc-EEeec
Q 041975 283 SNIKQVSKLSLLILDNWKRFLSLPELPCGS-SVYAR 317 (543)
Q Consensus 283 ~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~-~l~~~ 317 (543)
.. .++|+.|++++|+ +..+|.+|..+ .|++.
T Consensus 399 ~l---~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls 430 (788)
T PRK15387 399 VL---PSELKELMVSGNR-LTSLPMLPSGLLSLSVY 430 (788)
T ss_pred Cc---ccCCCEEEccCCc-CCCCCcchhhhhhhhhc
Confidence 32 2456666666664 34455544433 34433
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=7.8e-17 Score=156.77 Aligned_cols=270 Identities=19% Similarity=0.181 Sum_probs=192.2
Q ss_pred cEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEE-ECCCCCCCCCCCC--CC
Q 041975 35 AIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFH-WDGYPLKTLPSKI--SP 111 (543)
Q Consensus 35 ~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~-l~~~~l~~lp~~~--~l 111 (543)
....|.||.++++ .|++.+|+.+++||.|+|++|. +...-|..|..+. +|..|- .++|.++.+|... ++
T Consensus 68 ~tveirLdqN~I~--~iP~~aF~~l~~LRrLdLS~N~-----Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS--SIPPGAFKTLHRLRRLDLSKNN-----ISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcc--cCChhhccchhhhceecccccc-----hhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhH
Confidence 4567788877775 7899999999999999999998 6777788999997 555554 4558899999864 89
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCC-cccCCCCCCEEeccCCCCCC--------
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSS-SLCNLKSLESLYLSGCLKLE-------- 182 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~~~-------- 182 (543)
..|+.|.+.-|++. ......+..+++|..|.+.+| ....++. .+..+.+++++.+..|.+..
T Consensus 140 ~slqrLllNan~i~--------Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 140 SSLQRLLLNANHIN--------CIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred HHHHHHhcChhhhc--------chhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhh
Confidence 99999999999886 445567889999999999997 6666776 68889999999988876322
Q ss_pred ----cCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEE---EccCcCCCCCCCCCCCCc--cccCCCCCeEeccCC
Q 041975 183 ----KLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELL---SFAGCKGRPPQMGLKLPI--LFQSQILENLSLINC 253 (543)
Q Consensus 183 ----~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L---~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n 253 (543)
..|-.++......-..+....+.+++..-. ..+++.+ -.+.|.... ..|. +.++++|+.|+|++|
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf-~c~~esl~s~~~~~d~~d~-----~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKF-LCSLESLPSRLSSEDFPDS-----ICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred hHHhhchhhcccceecchHHHHHHHhcccchhhh-hhhHHhHHHhhccccCcCC-----cChHHHHhhcccceEeccCCC
Confidence 223333333333334444444443332111 1112211 112222211 2455 899999999999999
Q ss_pred CCCc-CCccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCccc
Q 041975 254 NIIE-LPESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTL 331 (543)
Q Consensus 254 ~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~ 331 (543)
++++ -+.+|..+..+++|.|.+|++..+. ..+.++..|+.|+|.+|+...-.|.. +....+|.+|....+.
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a-------F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA-------FQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc-------ccccceeeeeehccCc
Confidence 9999 5678889999999999999998665 34788999999999999766555531 2234566777766665
Q ss_pred ccC
Q 041975 332 FKP 334 (543)
Q Consensus 332 ~~~ 334 (543)
|.+
T Consensus 358 ~~C 360 (498)
T KOG4237|consen 358 FNC 360 (498)
T ss_pred ccC
Confidence 554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=8.7e-16 Score=155.23 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=26.0
Q ss_pred CCCCEEeccCCCCCC----cCCcccCCCCCCceeeccCcccc-----ccCCCCCCCCCCcEEEccCcCC
Q 041975 168 KSLESLYLSGCLKLE----KLPEEIGNLGSLKNMVANEIAIS-----QVPSSISCLNRVELLSFAGCKG 227 (543)
Q Consensus 168 ~~L~~L~Ls~~~~~~----~~p~~l~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~ 227 (543)
++|+.|++++|.+.+ .++..+..+.+|++|++++|.++ .++..+..+++|+.|++++|.+
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 455555555554432 12222334444555555555444 1222233334555555555543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=6.3e-15 Score=148.95 Aligned_cols=188 Identities=22% Similarity=0.185 Sum_probs=124.6
Q ss_pred CCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCC---CCCEEeccCCCCCC----c
Q 041975 111 PEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLK---SLESLYLSGCLKLE----K 183 (543)
Q Consensus 111 l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~---~L~~L~Ls~~~~~~----~ 183 (543)
.++|++|+++++.+.... ..+..++..+..+++|+.|++++|......+..+..+. +|++|++++|.... .
T Consensus 50 ~~~l~~l~l~~~~~~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 50 QPSLKELCLSLNETGRIP--RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred CCCceEEeccccccCCcc--hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 344555555555443100 01134455667788888888888765544444444444 49999999887652 2
Q ss_pred CCcccCCC-CCCceeeccCcccc-----ccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCC
Q 041975 184 LPEEIGNL-GSLKNMVANEIAIS-----QVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNII 256 (543)
Q Consensus 184 ~p~~l~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~ 256 (543)
+...+..+ ++|+.|++++|.++ .++..+..+++|+.|++++|.+..... ..++. +..+++|+.|++++|.++
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI-RALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH-HHHHHHHHhCCCCCEEeccCCccC
Confidence 33345566 89999999999887 344556777899999999998764210 00121 455679999999999887
Q ss_pred c-----CCccCCCCCCCCeEecCCCCCccC-Cccc-c----CCCCCCEEecccccc
Q 041975 257 E-----LPESLGQLPSLKYLNLEENNFEKI-PSNI-K----QVSKLSLLILDNWKR 301 (543)
Q Consensus 257 ~-----lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l-~----~l~~L~~L~L~~~~~ 301 (543)
+ ++..+..+++|++|++++|.++.. ...+ . ..+.|+.|++++|..
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 4 455677889999999999988731 1111 1 247999999999964
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.36 E-value=2e-14 Score=140.14 Aligned_cols=255 Identities=16% Similarity=0.207 Sum_probs=160.8
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecC-CcccccccceEEEECCCCCCCCCCCC--C
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVR-SMESLFNEQRYFHWDGYPLKTLPSKI--S 110 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~-~l~~l~~~Lr~L~l~~~~l~~lp~~~--~ 110 (543)
.+++.|+|..+++ ..|.+++|+++++|-.|.+++++ ....+|. .|..+. .|+.|.+..|.+..++... .
T Consensus 91 ~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~N-----kI~~l~k~~F~gL~-slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 91 HRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNN-----KITDLPKGAFGGLS-SLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred hhhceecccccch--hhcChHhhhhhHhhhHHHhhcCC-----chhhhhhhHhhhHH-HHHHHhcChhhhcchhHHHHHH
Confidence 4556655554444 47889999999999888888833 2233333 445554 5566655555555554432 4
Q ss_pred CCCeeEEEcCCCCcccccccc-----------------------------------------------------------
Q 041975 111 PEHLVSLEMPNSNIEQLWNDV----------------------------------------------------------- 131 (543)
Q Consensus 111 l~~L~~L~L~~n~l~~l~~~~----------------------------------------------------------- 131 (543)
+++|..|.+.+|.+..+.++.
T Consensus 163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~ 242 (498)
T KOG4237|consen 163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR 242 (498)
T ss_pred hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh
Confidence 555555555555554444432
Q ss_pred ----ccccc---------C------ccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCC
Q 041975 132 ----QLEEL---------P------SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLG 192 (543)
Q Consensus 132 ----~l~~l---------p------~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~ 192 (543)
..+.+ | ..|..|++|++|+|++|+....-+.+|..+..++.|.|..|++-..-...|.++.
T Consensus 243 kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls 322 (498)
T KOG4237|consen 243 KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS 322 (498)
T ss_pred hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc
Confidence 11111 1 1367899999999999866666677788999999999999876554445688899
Q ss_pred CCceeeccCccccc-cCCCCCCCCCCcEEEccCcCCCCCCC------------CCCCCccccCCCCCeEeccCCCCCc--
Q 041975 193 SLKNMVANEIAISQ-VPSSISCLNRVELLSFAGCKGRPPQM------------GLKLPILFQSQILENLSLINCNIIE-- 257 (543)
Q Consensus 193 ~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~------------~~~lp~~~~l~~L~~L~Ls~n~l~~-- 257 (543)
.|+.|++.+|+|+. .|.+|..+.+|.+|.+-.|...-+.. ....|.-.....++.+.+++..+.+
T Consensus 323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~ 402 (498)
T KOG4237|consen 323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFR 402 (498)
T ss_pred cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccc
Confidence 99999999999995 46678888999999887765432110 0112222223344444444432221
Q ss_pred -----------------------------------CCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccc
Q 041975 258 -----------------------------------LPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 258 -----------------------------------lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 301 (543)
+|..+- ..-.+|.+.+|.++.+|.. .+.+| .+++++|+.
T Consensus 403 c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i 476 (498)
T KOG4237|consen 403 CGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRI 476 (498)
T ss_pred cCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH--HHhhh-hcccccCce
Confidence 221111 1345778889999999876 66777 888888853
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=4.4e-14 Score=143.59 Aligned_cols=191 Identities=28% Similarity=0.380 Sum_probs=159.5
Q ss_pred cceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
.-...|++.|.+..+|..+ .+..|..|.|..|.+ ..+|..++++..|++|||+.| .+..+|..++.|+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~---------r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp- 144 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCI---------RTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP- 144 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccc---------eecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-
Confidence 3456688889999999877 677788888888888 578889999999999999987 6778888888876
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeE
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENL 248 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L 248 (543)
|+.|.+++ +.++.+|+.++.+..|..|+.+.|.+..+|..++.+.+|+.|.+..|.... +|. +..+ .|..|
T Consensus 145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~------lp~El~~L-pLi~l 216 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED------LPEELCSL-PLIRL 216 (722)
T ss_pred ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh------CCHHHhCC-ceeee
Confidence 89999987 457888999998899999999999999999999999999999999998776 666 5543 48899
Q ss_pred eccCCCCCcCCccCCCCCCCCeEecCCCCCccCCcccc---CCCCCCEEeccccc
Q 041975 249 SLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIK---QVSKLSLLILDNWK 300 (543)
Q Consensus 249 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~---~l~~L~~L~L~~~~ 300 (543)
|+|.|++..+|-.|.+|+.|++|-|.+|.+.+-|..+. ...-.++|+..-|.
T Consensus 217 DfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 217 DFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99999999999999999999999999999998876553 33345778887774
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=7.3e-14 Score=141.99 Aligned_cols=192 Identities=25% Similarity=0.381 Sum_probs=166.7
Q ss_pred EEECCCCCCCCCCCC---CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCC
Q 041975 95 FHWDGYPLKTLPSKI---SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLE 171 (543)
Q Consensus 95 L~l~~~~l~~lp~~~---~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 171 (543)
|.|++-.++.+|..- .+.--+..||+.|++ .++|..+..+..|+.+.|..| .+..+|..++++..|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~---------~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt 124 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF---------SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALT 124 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccccc---------ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHH
Confidence 445555566666432 455567889999998 689999999999999999987 7888999999999999
Q ss_pred EEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEec
Q 041975 172 SLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSL 250 (543)
Q Consensus 172 ~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~L 250 (543)
+|||+.|+ +..+|..+..|+ |+.|.+++|+++.+|..++.+..|..|+.+.|.+.. +|. ++++.+|+.|.+
T Consensus 125 ~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s------lpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 125 FLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS------LPSQLGYLTSLRDLNV 196 (722)
T ss_pred Hhhhccch-hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhh------chHHhhhHHHHHHHHH
Confidence 99999965 677888887775 899999999999999999988999999999999877 777 999999999999
Q ss_pred cCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCC
Q 041975 251 INCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 251 s~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 306 (543)
..|++..+|..+..| .|..||++.|++..||-.+.++..|++|.|.+|+. ++-|
T Consensus 197 rRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL-qSPP 250 (722)
T KOG0532|consen 197 RRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL-QSPP 250 (722)
T ss_pred hhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC-CCCh
Confidence 999999999999955 59999999999999999999999999999999974 4443
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=4.4e-12 Score=132.24 Aligned_cols=196 Identities=31% Similarity=0.403 Sum_probs=148.6
Q ss_pred EEEECCCCC-CCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCc-CCcEEeccccccCeecCCcccCCCCCC
Q 041975 94 YFHWDGYPL-KTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLS-RLVTLDLRKCLRLKKVSSSLCNLKSLE 171 (543)
Q Consensus 94 ~L~l~~~~l-~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~-~L~~L~L~~~~~l~~lp~~i~~l~~L~ 171 (543)
.|....+.+ ..+......+.+..|++.+|.+ ..+|...+.+. +|+.|++++| .+..+|..+..+++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i---------~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~ 166 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNI---------TDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLK 166 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccc---------ccCccccccchhhccccccccc-chhhhhhhhhcccccc
Confidence 466666666 3343334567788888888887 46677666774 8888888876 6666766678888888
Q ss_pred EEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEecc
Q 041975 172 SLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLI 251 (543)
Q Consensus 172 ~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls 251 (543)
.|++++|+ +..+|...+.+++|+.|++++|.+..+|..+..+..|+.|.+++|..... +..+..+.++..|.+.
T Consensus 167 ~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-----~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 167 NLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-----LSSLSNLKNLSGLELS 240 (394)
T ss_pred ccccCCch-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec-----chhhhhcccccccccC
Confidence 88888865 45556555578888888888888888888776777788888888853331 3337777888888888
Q ss_pred CCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCC
Q 041975 252 NCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 252 ~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 306 (543)
+|++..++..++.+++|+.|++++|.++.++. ++.+.+|+.|+++++.....+|
T Consensus 241 ~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred Cceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 88888888888888999999999999998886 8888999999999887654444
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=8.8e-13 Score=124.45 Aligned_cols=130 Identities=24% Similarity=0.214 Sum_probs=61.0
Q ss_pred CcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEc
Q 041975 143 LSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSF 222 (543)
Q Consensus 143 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L 222 (543)
.+.|++|||++| .++.+..+..-++.++.|++|+|.+... ..+..+.+|+.|++++|.++++..+-..+.+.+.|.+
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 344555555554 4444444444455555555555544332 2244455555555555555554444444555555555
Q ss_pred cCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcC--CccCCCCCCCCeEecCCCCCccC
Q 041975 223 AGCKGRPPQMGLKLPILFQSQILENLSLINCNIIEL--PESLGQLPSLKYLNLEENNFEKI 281 (543)
Q Consensus 223 ~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~l 281 (543)
++|.+.. +..+..+-+|..||+++|+|.++ -..++++|.|+.|.|.+|.+..+
T Consensus 360 a~N~iE~------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIET------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhh------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 5554333 33344444444444444444431 12344444444444444444433
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=2.3e-11 Score=136.20 Aligned_cols=207 Identities=24% Similarity=0.245 Sum_probs=105.9
Q ss_pred cceEEEECCCC--CCCCCCCC--CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccC
Q 041975 91 EQRYFHWDGYP--LKTLPSKI--SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCN 166 (543)
Q Consensus 91 ~Lr~L~l~~~~--l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~ 166 (543)
+|++|-+.+|. +..++..| .++.|++|||++|.= +.++|++|+.|-+||+|+|+++ .+..+|..+.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~--------l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~ 616 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS--------LSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGN 616 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc--------cCcCChHHhhhhhhhcccccCC-CccccchHHHH
Confidence 46666665554 45555443 466666666665431 2556666666666666666653 45566666666
Q ss_pred CCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCcccc---ccCCCCCCCCCCcEEEccCcCCCC--------------
Q 041975 167 LKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAIS---QVPSSISCLNRVELLSFAGCKGRP-------------- 229 (543)
Q Consensus 167 l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~-------------- 229 (543)
|++|.+|++..+.....+|.....|++|++|.+...... ..-..+.++.+|+.+.........
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLL 696 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHh
Confidence 666666666665555555554555666666655444311 111122333444433332221100
Q ss_pred -------CCCCCCCCccccCCCCCeEeccCCCCCcCCc-cCCC------CCCCCeEecCCCCCccCCccccCCCCCCEEe
Q 041975 230 -------PQMGLKLPILFQSQILENLSLINCNIIELPE-SLGQ------LPSLKYLNLEENNFEKIPSNIKQVSKLSLLI 295 (543)
Q Consensus 230 -------~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~-~l~~------l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 295 (543)
.......+.+..+.+|+.|.+.+|.+.++.. .... ++++..+.+.++..-..+.+..-.++|+.|.
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLS 776 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEE
Confidence 0000112336667777777777777765221 1111 2233334444443334444445567888888
Q ss_pred cccccccccCC
Q 041975 296 LDNWKRFLSLP 306 (543)
Q Consensus 296 L~~~~~l~~lp 306 (543)
+.+|+.+..+.
T Consensus 777 l~~~~~~e~~i 787 (889)
T KOG4658|consen 777 LVSCRLLEDII 787 (889)
T ss_pred EecccccccCC
Confidence 88887766543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.5e-11 Score=128.19 Aligned_cols=182 Identities=30% Similarity=0.397 Sum_probs=155.8
Q ss_pred cccccccceEEEECCCCCCCCCCCCCCC--CeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCC
Q 041975 85 MESLFNEQRYFHWDGYPLKTLPSKISPE--HLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSS 162 (543)
Q Consensus 85 l~~l~~~Lr~L~l~~~~l~~lp~~~~l~--~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 162 (543)
+..+. .++.|++.++++..+|...... +|++|++++|++. .+|..++.+++|+.|++++| .+..+|.
T Consensus 112 ~~~~~-~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~---------~l~~~~~~l~~L~~L~l~~N-~l~~l~~ 180 (394)
T COG4886 112 LLELT-NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---------SLPSPLRNLPNLKNLDLSFN-DLSDLPK 180 (394)
T ss_pred hhccc-ceeEEecCCcccccCccccccchhhcccccccccchh---------hhhhhhhccccccccccCCc-hhhhhhh
Confidence 34443 8999999999999999987543 9999999999994 66777899999999999998 7778887
Q ss_pred cccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-ccc
Q 041975 163 SLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQ 241 (543)
Q Consensus 163 ~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~ 241 (543)
..+.+++|+.|++++|. +..+|..++.+..|++|.+++|.+...+..+.++.++..|.+.+|+... ++. +..
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------~~~~~~~ 253 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------LPESIGN 253 (394)
T ss_pred hhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------ccchhcc
Confidence 66689999999999965 6677877777888999999999888888889999999999988888655 344 778
Q ss_pred CCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccc
Q 041975 242 SQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNI 285 (543)
Q Consensus 242 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 285 (543)
+++++.|++++|.++.++. ++.+.+|+.|++++|.+..++...
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccchhh
Confidence 8889999999999999887 999999999999999988665443
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=3.6e-11 Score=134.67 Aligned_cols=229 Identities=25% Similarity=0.305 Sum_probs=133.2
Q ss_pred ccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCC-cccccccceEEEECCCC-CCCCCCCC
Q 041975 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRS-MESLFNEQRYFHWDGYP-LKTLPSKI 109 (543)
Q Consensus 32 ~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~-l~~l~~~Lr~L~l~~~~-l~~lp~~~ 109 (543)
....++.+++-......+.- + ...++|++|-+.+|.. ....++.. |..+| .||+||+++|. +..+|..+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~---~-~~~~~L~tLll~~n~~----~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAG---S-SENPKLRTLLLQRNSD----WLLEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred chhheeEEEEeccchhhccC---C-CCCCccceEEEeecch----hhhhcCHHHHhhCc-ceEEEECCCCCccCcCChHH
Confidence 34556666665554432211 1 1233677777777630 02333333 44565 78888888664 67788777
Q ss_pred -CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCC--CcCCc
Q 041975 110 -SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKL--EKLPE 186 (543)
Q Consensus 110 -~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~--~~~p~ 186 (543)
.+-+|++|+|+++.+ ..+|..+++|++|.+||+..+..+..+|..+..+.+|++|.+..-... ...-.
T Consensus 592 ~~Li~LryL~L~~t~I---------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~ 662 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGI---------SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLK 662 (889)
T ss_pred hhhhhhhcccccCCCc---------cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHH
Confidence 678888888888877 467777888888888888877666666665666788888877653211 11112
Q ss_pred ccCCCCCCceeeccC--------------------------ccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--
Q 041975 187 EIGNLGSLKNMVANE--------------------------IAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-- 238 (543)
Q Consensus 187 ~l~~l~~L~~L~l~~--------------------------~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-- 238 (543)
.+.++.+|+.+.... +.....+.++..+.+|+.|.+.+|........ ....
T Consensus 663 el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-~~~~~~ 741 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE-WEESLI 741 (889)
T ss_pred hhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc-cccccc
Confidence 233344444333222 22224455677888999999999987542110 0011
Q ss_pred cc-cCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCc
Q 041975 239 LF-QSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 239 ~~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
.. .++++..+...+|..-..+.+..-.++|+.|.+..+...
T Consensus 742 ~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 742 VLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred hhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccc
Confidence 11 133455555555544444555555678888888877554
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.8e-11 Score=121.32 Aligned_cols=203 Identities=18% Similarity=0.133 Sum_probs=119.2
Q ss_pred cceEEEECCCCCCCCCC--CC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCc-ccC
Q 041975 91 EQRYFHWDGYPLKTLPS--KI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSS-LCN 166 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~--~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~-i~~ 166 (543)
+||...+.+++....+. .. .+++++.|||++|-+... ..+-.-...|++|+.|+|+.|+..--..+. -..
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw------~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW------FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH------HHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 66666676666665553 22 567777777777655421 233333456677777777766433222111 124
Q ss_pred CCCCCEEeccCCCCCCc-CCcccCCCCCCceeeccCcc-ccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCC
Q 041975 167 LKSLESLYLSGCLKLEK-LPEEIGNLGSLKNMVANEIA-ISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQI 244 (543)
Q Consensus 167 l~~L~~L~Ls~~~~~~~-~p~~l~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~ 244 (543)
++.|+.|.+++|.+... +-..+...++|+.|++..|. +..-......+..|+.|+|++|.+... ..++..+.++.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~---~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF---DQGYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc---ccccccccccc
Confidence 56677777777765432 11113345667777777663 222222233456677777777776552 11333667777
Q ss_pred CCeEeccCCCCCc--CCcc-----CCCCCCCCeEecCCCCCccCC--ccccCCCCCCEEeccccccc
Q 041975 245 LENLSLINCNIIE--LPES-----LGQLPSLKYLNLEENNFEKIP--SNIKQVSKLSLLILDNWKRF 302 (543)
Q Consensus 245 L~~L~Ls~n~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l 302 (543)
|+.|+++.|.+.+ .|+. ...+++|++|++..|++...+ ..+..+++|+.|.+..|+.-
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8888888887776 4443 345778888888888887665 23556677777776666543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=9.2e-11 Score=110.97 Aligned_cols=224 Identities=18% Similarity=0.178 Sum_probs=120.0
Q ss_pred HhCCCCccEEEEecCCCCC---CcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCcccccccc
Q 041975 56 FTKMHRLRFFKFYNSISGE---NRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDV 131 (543)
Q Consensus 56 f~~l~~Lr~L~l~~n~~~~---~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~ 131 (543)
+.-+.+|..|.+++....- +.....+|-.+..+ ++|+.+.++.+.-+.|-... .-+.|+.+...++.+.
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f-~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~------ 250 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAF-RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ------ 250 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHh-hhhheeeeeccchhheeceeecCchhheeeeeccccc------
Confidence 3445677777776543200 00111122233333 46777777766655544433 3455666666655442
Q ss_pred cccccCccccCCcCCcEEecccc---ccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccC
Q 041975 132 QLEELPSSIGNLSRLVTLDLRKC---LRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVP 208 (543)
Q Consensus 132 ~l~~lp~~l~~l~~L~~L~L~~~---~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp 208 (543)
..|. +--.+.+. |..+- ...+..-..+-....|+.||||+|. +..+.++..-++.++.|+++.|.+..+.
T Consensus 251 ---~~~~-l~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~ 323 (490)
T KOG1259|consen 251 ---DVPS-LLPETILA--DPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQ 323 (490)
T ss_pred ---cccc-ccchhhhc--CccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeeh
Confidence 1111 10111111 11110 0111111122234567777777754 4455556666677777777777777664
Q ss_pred CCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCC--ccc
Q 041975 209 SSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIP--SNI 285 (543)
Q Consensus 209 ~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l 285 (543)
. +..+++|+.|++++|.+.. +.. -..+-+++.|.|+.|.+.++. +++.+-+|..||+++|+|..+. ..+
T Consensus 324 n-La~L~~L~~LDLS~N~Ls~------~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~I 395 (490)
T KOG1259|consen 324 N-LAELPQLQLLDLSGNLLAE------CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHI 395 (490)
T ss_pred h-hhhcccceEeecccchhHh------hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhccc
Confidence 4 6667777777777776543 222 234556777777777666543 5666677777777777776443 456
Q ss_pred cCCCCCCEEecccccc
Q 041975 286 KQVSKLSLLILDNWKR 301 (543)
Q Consensus 286 ~~l~~L~~L~L~~~~~ 301 (543)
+++|.|+.|.|.+|+.
T Consensus 396 G~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 396 GNLPCLETLRLTGNPL 411 (490)
T ss_pred ccccHHHHHhhcCCCc
Confidence 7777777777777753
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-10 Score=115.63 Aligned_cols=205 Identities=18% Similarity=0.134 Sum_probs=147.4
Q ss_pred hCCCCccEEEEecCCCCCCcceeeec--CCcccccccceEEEECCCCCCCCCCC---C-CCCCeeEEEcCCCCccccccc
Q 041975 57 TKMHRLRFFKFYNSISGENRCKVHHV--RSMESLFNEQRYFHWDGYPLKTLPSK---I-SPEHLVSLEMPNSNIEQLWND 130 (543)
Q Consensus 57 ~~l~~Lr~L~l~~n~~~~~~~~~~~~--~~l~~l~~~Lr~L~l~~~~l~~lp~~---~-~l~~L~~L~L~~n~l~~l~~~ 130 (543)
+++++||...+.++.. ...+ .....+| ++|.||+++|-+..+-.. . .+++|+.|+|+.|++...|..
T Consensus 118 sn~kkL~~IsLdn~~V------~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV------EDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCccc------cccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 4667888888887642 1111 3455676 999999999877544332 2 688999999999988644432
Q ss_pred ccccccCccccCCcCCcEEeccccccCe-ecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccC-
Q 041975 131 VQLEELPSSIGNLSRLVTLDLRKCLRLK-KVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVP- 208 (543)
Q Consensus 131 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp- 208 (543)
. .-..++.|+.|.|+.|.... .+-..+..+++|+.|+|.+|............++.|+.|+|++|.+...+
T Consensus 191 ~-------~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 191 N-------TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred c-------chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc
Confidence 1 11357789999999995442 23333456789999999998644433334456788999999999988776
Q ss_pred -CCCCCCCCCcEEEccCcCCCCCCCCCCCCc------cccCCCCCeEeccCCCCCcCC--ccCCCCCCCCeEecCCCCCc
Q 041975 209 -SSISCLNRVELLSFAGCKGRPPQMGLKLPI------LFQSQILENLSLINCNIIELP--ESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 209 -~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~------~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 279 (543)
...+.++.|+.|+++.|.+... .+|. ...+++|+.|+++.|++.+++ ..+..+++|+.|.+.+|.+.
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si----~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASI----AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccccchhhhhccccCcchh----cCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 5678889999999998886652 2333 467889999999999998855 45667889999999898876
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=5.5e-10 Score=101.23 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=4.2
Q ss_pred cceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCc
Q 041975 91 EQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNI 124 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l 124 (543)
++|.|++++|.++.+...- .+.+|+.|+|++|.|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I 54 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI 54 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCC
Confidence 3444444444444443322 234444444444444
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=1e-09 Score=99.55 Aligned_cols=128 Identities=23% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCCCCCceeeccCccccccCCCCC-CCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccC-CCCC
Q 041975 189 GNLGSLKNMVANEIAISQVPSSIS-CLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESL-GQLP 266 (543)
Q Consensus 189 ~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~ 266 (543)
.+..++++|+++++.|+.+. .++ .+.+|+.|++++|.+.. ++.+..++.|+.|++++|+++++...+ ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~------l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK------LEGLPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-T
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc------ccCccChhhhhhcccCCCCCCccccchHHhCC
Confidence 34445666666666666553 243 45667777777777655 555666777888888888888776544 3578
Q ss_pred CCCeEecCCCCCccCC--ccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccC
Q 041975 267 SLKYLNLEENNFEKIP--SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSN 327 (543)
Q Consensus 267 ~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~ 327 (543)
+|++|++++|++..+. ..+..+++|+.|++.+|+.... + .--...+..||+|+.|+.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~---~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K---NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-T---THHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-h---hHHHHHHHHcChhheeCC
Confidence 8888888888777443 3467788888888888865321 1 111223445666666654
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=4e-11 Score=115.88 Aligned_cols=187 Identities=17% Similarity=0.195 Sum_probs=121.4
Q ss_pred CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCee-------------cCCcccCCCCCCEEecc
Q 041975 110 SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKK-------------VSSSLCNLKSLESLYLS 176 (543)
Q Consensus 110 ~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-------------lp~~i~~l~~L~~L~Ls 176 (543)
..++|++||||+|-+.. ..+..+-.-+.++..|++|.|.+|..... ....+.+-+.|+++...
T Consensus 90 ~~~~L~~ldLSDNA~G~----~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGP----KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred cCCceeEeeccccccCc----cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34567777777776541 00011222345567777777777632211 11123445678888888
Q ss_pred CCCCCCc----CCcccCCCCCCceeeccCcccc-----ccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCC
Q 041975 177 GCLKLEK----LPEEIGNLGSLKNMVANEIAIS-----QVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILE 246 (543)
Q Consensus 177 ~~~~~~~----~p~~l~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~ 246 (543)
.|..-.. +...+...+.|+.+.+..|.|. -+...+..+++|++|+|.+|.+....+ ..+.. +..+++|+
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs-~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-VALAKALSSWPHLR 244 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH-HHHHHHhcccchhe
Confidence 7653321 2234666788899999888776 233467788999999999998765311 01112 67788999
Q ss_pred eEeccCCCCCc-----CCccC-CCCCCCCeEecCCCCCc-----cCCccccCCCCCCEEecccccc
Q 041975 247 NLSLINCNIIE-----LPESL-GQLPSLKYLNLEENNFE-----KIPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 247 ~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~~ 301 (543)
+|++++|.+.. +-..+ ...++|+.|.+.+|.++ .+...+...+.|..|+|++|+.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999998875 22222 34789999999999887 3334566789999999999964
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.71 E-value=2.2e-08 Score=109.88 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=85.2
Q ss_pred CCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCcccc-ccCCCCCCCCCCcEEEcc
Q 041975 145 RLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAIS-QVPSSISCLNRVELLSFA 223 (543)
Q Consensus 145 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~ 223 (543)
.++.|+|++|...+.+|..++++++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+. .+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888777788888888888999999888888888888888888999999888887 678888888889999998
Q ss_pred CcCCCCCCCCCCCCc-ccc-CCCCCeEeccCCC
Q 041975 224 GCKGRPPQMGLKLPI-LFQ-SQILENLSLINCN 254 (543)
Q Consensus 224 ~~~~~~~~~~~~lp~-~~~-l~~L~~L~Ls~n~ 254 (543)
+|.+... +|. +.. ..++..+++.+|.
T Consensus 499 ~N~l~g~-----iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGR-----VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCccccc-----CChHHhhccccCceEEecCCc
Confidence 8887765 666 433 3466788888874
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.5e-09 Score=113.81 Aligned_cols=215 Identities=23% Similarity=0.277 Sum_probs=122.7
Q ss_pred CCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCccccccccccccc
Q 041975 58 KMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEEL 136 (543)
Q Consensus 58 ~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~l 136 (543)
.+..++.+.+..|.+ ......+..+. +|..|++.+|.++.+.... .+++|++|++++|.|++++
T Consensus 70 ~l~~l~~l~l~~n~i------~~~~~~l~~~~-~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-------- 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI------AKILNHLSKLK-SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-------- 134 (414)
T ss_pred HhHhHHhhccchhhh------hhhhccccccc-ceeeeeccccchhhcccchhhhhcchheecccccccccc--------
Confidence 344555555555531 11222344453 7777777777777777633 6777777888877776432
Q ss_pred CccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCC-cccCCCCCCceeeccCccccccCCCCCCCC
Q 041975 137 PSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLP-EEIGNLGSLKNMVANEIAISQVPSSISCLN 215 (543)
Q Consensus 137 p~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p-~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~ 215 (543)
.+..++.|+.|++++| .+..+.. +..+++|+.+++++|.+...-+ . +..+.+++.+.+.+|.+..+.. +..+.
T Consensus 135 --~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-~~~~~ 208 (414)
T KOG0531|consen 135 --GLSTLTLLKELNLSGN-LISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-LDLLK 208 (414)
T ss_pred --chhhccchhhheeccC-cchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-hHHHH
Confidence 2445566777777776 4444443 4446777777777766544322 1 3556677777777776664422 23334
Q ss_pred CCcEEEccCcCCCCCCCCCCCCccccCCC--CCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCE
Q 041975 216 RVELLSFAGCKGRPPQMGLKLPILFQSQI--LENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSL 293 (543)
Q Consensus 216 ~L~~L~L~~~~~~~~~~~~~lp~~~~l~~--L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 293 (543)
.+..+++..|.+.. +..+..+.. |+.+++++|.+..++..+..+..+..|++..|.+..+. .+...+.+..
T Consensus 209 ~l~~~~l~~n~i~~------~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~ 281 (414)
T KOG0531|consen 209 KLVLLSLLDNKISK------LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSE 281 (414)
T ss_pred HHHHhhccccccee------ccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHH
Confidence 44444555555433 222222222 66777777777666556666677777777777665443 2334445555
Q ss_pred Eeccccc
Q 041975 294 LILDNWK 300 (543)
Q Consensus 294 L~L~~~~ 300 (543)
+....++
T Consensus 282 ~~~~~~~ 288 (414)
T KOG0531|consen 282 LWLNDNK 288 (414)
T ss_pred hccCcch
Confidence 5555543
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=4.1e-08 Score=107.82 Aligned_cols=109 Identities=25% Similarity=0.377 Sum_probs=76.0
Q ss_pred CceeeccCcccc-ccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCe
Q 041975 194 LKNMVANEIAIS-QVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKY 270 (543)
Q Consensus 194 L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~ 270 (543)
++.|+|+++.+. .+|..+..+++|+.|+|++|.+.+. +|. +..+++|+.|+|++|++++ +|..++.+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-----iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-----IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-----CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 566777777766 5666677777777777777776654 665 7777777777777777775 7777777777777
Q ss_pred EecCCCCCc-cCCccccCC-CCCCEEecccccccccCCC
Q 041975 271 LNLEENNFE-KIPSNIKQV-SKLSLLILDNWKRFLSLPE 307 (543)
Q Consensus 271 L~Ls~n~l~-~lp~~l~~l-~~L~~L~L~~~~~l~~lp~ 307 (543)
|+|++|+++ .+|..++.+ .++..+++.+|+.+...|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 777777776 677666543 4566777777766655443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.1e-09 Score=111.33 Aligned_cols=190 Identities=24% Similarity=0.306 Sum_probs=142.6
Q ss_pred cceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
.++.+.+..|.++.+-... .+++|..|++.+|+|+ .+...+..+++|++|++++| .++.+.. +..++.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~---------~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~ 141 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE---------KIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTL 141 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchh---------hcccchhhhhcchheecccc-ccccccc-hhhccc
Confidence 6777778888887744433 7889999999999986 34434778999999999998 5555554 667888
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeE
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENL 248 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L 248 (543)
|+.|++++|.+... ..+..+.+|+.+++++|.+..+... ...+.+++.+.+.+|.+.. +..+..+..+..+
T Consensus 142 L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~------i~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 142 LKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE------IEGLDLLKKLVLL 213 (414)
T ss_pred hhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc------ccchHHHHHHHHh
Confidence 99999999775433 3466688999999999999877654 5778889999999988665 3334455556666
Q ss_pred eccCCCCCcCCccCCCCCC--CCeEecCCCCCccCCccccCCCCCCEEeccccc
Q 041975 249 SLINCNIIELPESLGQLPS--LKYLNLEENNFEKIPSNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 249 ~Ls~n~l~~lp~~l~~l~~--L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 300 (543)
++..|.++.+- .+..+.. |+.+++++|.+..++..+..+..+..|++.+++
T Consensus 214 ~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 214 SLLDNKISKLE-GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred hcccccceecc-CcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 88888777643 2233333 899999999999887777888889999888875
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8.9e-10 Score=104.35 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=56.1
Q ss_pred CeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcc--cCC
Q 041975 113 HLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEE--IGN 190 (543)
Q Consensus 113 ~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~--l~~ 190 (543)
.|++|||++..|+. ..+...+..+.+|+.|.|.++..-..+...+.+-.+|+.|+++.|+-....... +.+
T Consensus 186 Rlq~lDLS~s~it~-------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeH-------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 47888888887763 455556677788888888877555555556677778888888887655543221 345
Q ss_pred CCCCceeeccCcccc
Q 041975 191 LGSLKNMVANEIAIS 205 (543)
Q Consensus 191 l~~L~~L~l~~~~i~ 205 (543)
++.|..|+++.+.+.
T Consensus 259 cs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLF 273 (419)
T ss_pred hhhHhhcCchHhhcc
Confidence 556666666555443
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=1.8e-09 Score=104.59 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=115.5
Q ss_pred ccccCCcCCcEEeccccccCeecC----CcccCCCCCCEEeccCCCCCCc-------------CCcccCCCCCCceeecc
Q 041975 138 SSIGNLSRLVTLDLRKCLRLKKVS----SSLCNLKSLESLYLSGCLKLEK-------------LPEEIGNLGSLKNMVAN 200 (543)
Q Consensus 138 ~~l~~l~~L~~L~L~~~~~l~~lp----~~i~~l~~L~~L~Ls~~~~~~~-------------~p~~l~~l~~L~~L~l~ 200 (543)
..+..+++|++||||+|-.-..-+ ..+..+.+|++|+|.+|.+... ....++.-+.|+.+...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 345667899999999985443322 3356788999999999865321 11224456789999998
Q ss_pred CccccccC-----CCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCc-----CCccCCCCCCCCe
Q 041975 201 EIAISQVP-----SSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIE-----LPESLGQLPSLKY 270 (543)
Q Consensus 201 ~~~i~~lp-----~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~ 270 (543)
+|.+..-+ ..+...+.|+.+.+..|.+...........+..+++|+.|||.+|-++. +...+..+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 88877433 3456678899999999887654211111127788999999999998764 5566777889999
Q ss_pred EecCCCCCcc-----CCccc-cCCCCCCEEeccccccc
Q 041975 271 LNLEENNFEK-----IPSNI-KQVSKLSLLILDNWKRF 302 (543)
Q Consensus 271 L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~~~~l 302 (543)
|+++.|.+.. +-..+ ...|+|+.|.+.+|...
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 9999998762 22222 34789999999998654
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=4.2e-07 Score=92.34 Aligned_cols=157 Identities=21% Similarity=0.299 Sum_probs=100.9
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccC-ccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccC
Q 041975 164 LCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANE-IAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQS 242 (543)
Q Consensus 164 i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~-~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l 242 (543)
+..+.++++|++++| .+..+|. -..+|+.|.+++ +.++.+|..+. ++|+.|++++|..... +|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s-----LP----- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG-----LP----- 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc-----cc-----
Confidence 334688999999998 5666773 245799999987 45567776542 6899999998854332 44
Q ss_pred CCCCeEeccCCCCCc---CCccCCCCCCCCeEecCCCCCc---cCCccccCCCCCCEEecccccccccCCCCCCCc-EEe
Q 041975 243 QILENLSLINCNIIE---LPESLGQLPSLKYLNLEENNFE---KIPSNIKQVSKLSLLILDNWKRFLSLPELPCGS-SVY 315 (543)
Q Consensus 243 ~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~-~l~ 315 (543)
.+|+.|+++++.... +|. +|+.|.+.+++.. .+|.. -.++|++|++++|..+...+.+|.++ .|.
T Consensus 112 ~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ 183 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSIT 183 (426)
T ss_pred cccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEE
Confidence 468888887765433 543 5677777544311 22211 11689999999998765434688888 788
Q ss_pred ecCC--CCCccccCCcccccCCcceeeecccCCCC
Q 041975 316 ARHC--TSLETLSNLSTLFKPLCQKFDFCNCFKLN 348 (543)
Q Consensus 316 ~~~c--~~L~~l~~~~~~~~~~~~~~~~~~c~~L~ 348 (543)
+..+ .+++.. ...+.+.+ .+.|.+|.++.
T Consensus 184 ls~n~~~sLeI~---~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 184 LHIEQKTTWNIS---FEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred ecccccccccCc---cccccccc-EechhhhcccC
Confidence 7653 333322 21222334 78889998883
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.41 E-value=1.5e-06 Score=88.45 Aligned_cols=134 Identities=27% Similarity=0.413 Sum_probs=76.0
Q ss_pred CCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 111 PEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 111 l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
+.++..|++++|.++ .+|. -..+|+.|.+++|..+..+|..+ ..+|++|++++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~---------sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~---- 112 (426)
T PRK15386 51 ARASGRLYIKDCDIE---------SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE---- 112 (426)
T ss_pred hcCCCEEEeCCCCCc---------ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc----
Confidence 577888888888774 4451 22368888888887777777655 25788888888866666664
Q ss_pred CCCCceeeccCccc---cccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCC
Q 041975 191 LGSLKNMVANEIAI---SQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPS 267 (543)
Q Consensus 191 l~~L~~L~l~~~~i---~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 267 (543)
+|+.|++..+.. ..+|. +|+.|.+.++..... ..+|. .-.++|+.|++++|....+|..+. .+
T Consensus 113 --sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~---~~lp~-~LPsSLk~L~Is~c~~i~LP~~LP--~S 178 (426)
T PRK15386 113 --SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQ---ARIDN-LISPSLKTLSLTGCSNIILPEKLP--ES 178 (426)
T ss_pred --ccceEEeCCCCCcccccCcc------hHhheeccccccccc---ccccc-ccCCcccEEEecCCCcccCccccc--cc
Confidence 356666665543 23343 344555543221100 00111 011456666666665544443332 35
Q ss_pred CCeEecCCC
Q 041975 268 LKYLNLEEN 276 (543)
Q Consensus 268 L~~L~Ls~n 276 (543)
|+.|.++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 666666554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=3.3e-09 Score=111.28 Aligned_cols=127 Identities=27% Similarity=0.198 Sum_probs=89.1
Q ss_pred cCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEcc
Q 041975 144 SRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFA 223 (543)
Q Consensus 144 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~ 223 (543)
.+|.+.+.+.| .+..+..++.-++.|+.|+|++|++... +.+..+.+|++||++.|.++.+|.--..-..|+.|.++
T Consensus 164 n~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 35667777765 5666666677778888888888765544 36777888888888888888777532222348888888
Q ss_pred CcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCC--ccCCCCCCCCeEecCCCCCc
Q 041975 224 GCKGRPPQMGLKLPILFQSQILENLSLINCNIIELP--ESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 224 ~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 279 (543)
+|.+.. +-.+.++.+|+.||+++|-|.+.. ..+..+..|+.|.|.||.+-
T Consensus 241 nN~l~t------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTT------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHh------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 887655 555777888888888888766521 23556677888888888765
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=1.2e-06 Score=65.15 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=15.6
Q ss_pred cceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCc
Q 041975 91 EQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNI 124 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l 124 (543)
+|++|++++|.++.+|.. | ++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL 37 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc
Confidence 444444444444444432 2 344444444444444
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=3.1e-07 Score=87.36 Aligned_cols=227 Identities=16% Similarity=0.136 Sum_probs=131.6
Q ss_pred ceEEEECCCCCCCCCCC--C--CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCC
Q 041975 92 QRYFHWDGYPLKTLPSK--I--SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNL 167 (543)
Q Consensus 92 Lr~L~l~~~~l~~lp~~--~--~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l 167 (543)
+..|.+.++.+.+.... + ....+++|||.+|.|+. | .++-.-+.+++.|++|+|+.|.....+...-..+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-W-----seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-W-----SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-H-----HHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 33455555555433321 1 45677777777777752 2 3445556677777777777664332222111245
Q ss_pred CCCCEEeccCCCCCCc-CCcccCCCCCCceeeccCccccccC---CCCCCC-CCCcEEEccCcCCCCCCCCCCCCc-ccc
Q 041975 168 KSLESLYLSGCLKLEK-LPEEIGNLGSLKNMVANEIAISQVP---SSISCL-NRVELLSFAGCKGRPPQMGLKLPI-LFQ 241 (543)
Q Consensus 168 ~~L~~L~Ls~~~~~~~-~p~~l~~l~~L~~L~l~~~~i~~lp---~~i~~l-~~L~~L~L~~~~~~~~~~~~~lp~-~~~ 241 (543)
++|++|.|.|....-. ....+..++.+++|.++.|++..+- ..+... +.+++|...+|....-. ..-. ..-
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~---~~~~l~r~ 197 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL---NKNKLSRI 197 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH---HHHhHHhh
Confidence 6777777776433211 1223455666677777776554321 111111 23444444444311100 0000 123
Q ss_pred CCCCCeEeccCCCCCc--CCccCCCCCCCCeEecCCCCCccCC--ccccCCCCCCEEecccccccccCCCCCCCcEEeec
Q 041975 242 SQILENLSLINCNIIE--LPESLGQLPSLKYLNLEENNFEKIP--SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYAR 317 (543)
Q Consensus 242 l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~ 317 (543)
++++..+.+..|.+.+ --.....++.+..|+|+.|++.+.. +.+..++.|+.|.+++++.+..+.. .....+.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~-~err~llIa 276 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG-GERRFLLIA 276 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC-CcceEEEEe
Confidence 5678888888887766 3345566788889999999998554 4688999999999999988776654 222256677
Q ss_pred CCCCCccccCC
Q 041975 318 HCTSLETLSNL 328 (543)
Q Consensus 318 ~c~~L~~l~~~ 328 (543)
..+.++-|..+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 77777777654
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.4e-06 Score=64.79 Aligned_cols=59 Identities=34% Similarity=0.415 Sum_probs=35.4
Q ss_pred CCeeEEEcCCCCcccccccccccccC-ccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELP-SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCL 179 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 179 (543)
++|++|++++|+++ .+| ..+.++++|++|++++|.....-|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~---------~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT---------EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES---------EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC---------ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35667777777663 344 355666677777777664433334456666666666666654
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.2e-08 Score=96.95 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=110.7
Q ss_pred ccceEEEECCCCCC--CCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC--Ccc
Q 041975 90 NEQRYFHWDGYPLK--TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS--SSL 164 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp--~~i 164 (543)
..|++||++...++ ++-... .+.+|+.|.|.++++. ..+-..+..-.+|+.|||+.|..+.+.. --+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld--------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD--------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC--------cHHHHHHhccccceeeccccccccchhHHHHHH
Confidence 36999999988774 232223 6789999999999987 5666778889999999999997776543 235
Q ss_pred cCCCCCCEEeccCCCCCCcCCccc-C-CCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-ccc
Q 041975 165 CNLKSLESLYLSGCLKLEKLPEEI-G-NLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQ 241 (543)
Q Consensus 165 ~~l~~L~~L~Ls~~~~~~~~p~~l-~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~ 241 (543)
.+++.|..|+++.|......-..+ . --++|..|+++|+.-. -.. ..+.. ...
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-----------------------l~~--sh~~tL~~r 311 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-----------------------LQK--SHLSTLVRR 311 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-----------------------hhh--hHHHHHHHh
Confidence 788999999999997655431111 0 1134555555554211 000 00111 334
Q ss_pred CCCCCeEeccCCC-CCc-CCccCCCCCCCCeEecCCCCCc--cCCccccCCCCCCEEecccc
Q 041975 242 SQILENLSLINCN-IIE-LPESLGQLPSLKYLNLEENNFE--KIPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 242 l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~ 299 (543)
+++|.+|||++|. ++. .-..+..++.|++|.++.|..- ..--.+...|.|.+|++.+|
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5556666666552 332 3334556667777777776321 11123567788888888877
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=2.7e-08 Score=104.53 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=95.4
Q ss_pred CeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcc-cCCC
Q 041975 113 HLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEE-IGNL 191 (543)
Q Consensus 113 ~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~-l~~l 191 (543)
.|...+.++|.+ ..+..++.-++.|+.|||++|+.. ... .+..++.|++|||+.|. +..+|.. ...+
T Consensus 165 ~L~~a~fsyN~L---------~~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 165 KLATASFSYNRL---------VLMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC 232 (1096)
T ss_pred hHhhhhcchhhH---------HhHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccch-hccccccchhhh
Confidence 345555666665 566778888999999999998544 343 57889999999999965 5555543 2233
Q ss_pred CCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCc
Q 041975 192 GSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIE 257 (543)
Q Consensus 192 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~ 257 (543)
+|+.|.+++|.++.+- .+.+|++|+.||++.|-+... ..+..+..+..|+.|.|.+|.+.-
T Consensus 233 -~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~h---seL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 233 -KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEH---SELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -hheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcc---hhhhHHHHHHHHHHHhhcCCcccc
Confidence 4999999999998774 478999999999999987652 123336778889999999998754
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=4.3e-06 Score=57.35 Aligned_cols=39 Identities=44% Similarity=0.644 Sum_probs=25.5
Q ss_pred CCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCC
Q 041975 244 ILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIP 282 (543)
Q Consensus 244 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 282 (543)
+|++|++++|+++++|..++++++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566777777777776666677777777777777766554
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=8.6e-07 Score=84.46 Aligned_cols=79 Identities=19% Similarity=0.126 Sum_probs=48.5
Q ss_pred CCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCc--CCccCCCCCCCCeEecCCCCCc-cCCc------c
Q 041975 214 LNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIE--LPESLGQLPSLKYLNLEENNFE-KIPS------N 284 (543)
Q Consensus 214 l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~-~lp~------~ 284 (543)
++++..+-+..|.+..... -.....++.+--|+|+.++|.+ --+.+.+++.|..|.++++.+. .+-. -
T Consensus 198 Fpnv~sv~v~e~PlK~~s~---ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll 274 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESS---EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL 274 (418)
T ss_pred cccchheeeecCcccchhh---cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE
Confidence 3566666666665443210 0114455666678888888877 3356778889999999988775 2211 2
Q ss_pred ccCCCCCCEEe
Q 041975 285 IKQVSKLSLLI 295 (543)
Q Consensus 285 l~~l~~L~~L~ 295 (543)
++.+++++.|+
T Consensus 275 IaRL~~v~vLN 285 (418)
T KOG2982|consen 275 IARLTKVQVLN 285 (418)
T ss_pred EeeccceEEec
Confidence 45566666654
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.77 E-value=6.2e-06 Score=77.77 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=31.2
Q ss_pred CCCCeEeccCCCCCc------CCccCCCCCCCCeEecCCCCCcc-----CCccccCCCCCCEEecccc
Q 041975 243 QILENLSLINCNIIE------LPESLGQLPSLKYLNLEENNFEK-----IPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 243 ~~L~~L~Ls~n~l~~------lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~~ 299 (543)
..|+.+.+..|.|.. +-..+..+.+|+.|||..|.++. +...+...+.|+.|.+.+|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 456666666665543 12234456677777777776652 2223344455666666666
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.3e-05 Score=53.71 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=34.5
Q ss_pred CCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCCC
Q 041975 266 PSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPEL 308 (543)
Q Consensus 266 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l 308 (543)
++|++|++++|+++.+|..++++++|+.|++++|+ +.+++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 57999999999999999889999999999999995 4455543
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=0.00011 Score=66.67 Aligned_cols=80 Identities=25% Similarity=0.295 Sum_probs=57.6
Q ss_pred CCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCC-CCCCCeEecCCCCCccCC--ccccCCCCC
Q 041975 215 NRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQ-LPSLKYLNLEENNFEKIP--SNIKQVSKL 291 (543)
Q Consensus 215 ~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~-l~~L~~L~Ls~n~l~~lp--~~l~~l~~L 291 (543)
.....++|++|.+.. ++.+..++.|..|.+++|+|+.+-..+.. +++|+.|.|.+|++..+- ..+..+|+|
T Consensus 42 d~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhh------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 455667777777655 55577778888888888888886666654 567888888888877543 346677888
Q ss_pred CEEeccccc
Q 041975 292 SLLILDNWK 300 (543)
Q Consensus 292 ~~L~L~~~~ 300 (543)
++|.+-+|+
T Consensus 116 ~~Ltll~Np 124 (233)
T KOG1644|consen 116 EYLTLLGNP 124 (233)
T ss_pred ceeeecCCc
Confidence 888887775
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=2e-06 Score=72.99 Aligned_cols=61 Identities=31% Similarity=0.416 Sum_probs=49.9
Q ss_pred cCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccc
Q 041975 241 QSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 241 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 301 (543)
.++.++.|++++|.++++|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..+|..
T Consensus 75 kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 3456788888888888888888888889999999998888888777788888888877743
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=1.2e-05 Score=88.50 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=95.3
Q ss_pred cCCcEEeccccccCee-cCCcc-cCCCCCCEEeccCCCCCC-cCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEE
Q 041975 144 SRLVTLDLRKCLRLKK-VSSSL-CNLKSLESLYLSGCLKLE-KLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELL 220 (543)
Q Consensus 144 ~~L~~L~L~~~~~l~~-lp~~i-~~l~~L~~L~Ls~~~~~~-~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 220 (543)
.+|++|+++|...... -|..+ ..||+|+.|.+++=.+.. ++-....+.++|..||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5788888887544322 22223 247888888888733322 2233345778888888888888877 678888888888
Q ss_pred EccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCC-------ccCCCCCCCCeEecCCCCCc--cCCccccCCCCC
Q 041975 221 SFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELP-------ESLGQLPSLKYLNLEENNFE--KIPSNIKQVSKL 291 (543)
Q Consensus 221 ~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L 291 (543)
.+.+-.+... ..+-.+..+++|+.||+|.......+ +.-..+|+|+.||.|++.+. .+..-+..-++|
T Consensus 201 ~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 201 SMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred hccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 8887665441 11233677888888888876544322 12234788999999988776 222233445555
Q ss_pred CEEeccc
Q 041975 292 SLLILDN 298 (543)
Q Consensus 292 ~~L~L~~ 298 (543)
+.+.+-+
T Consensus 278 ~~i~~~~ 284 (699)
T KOG3665|consen 278 QQIAALD 284 (699)
T ss_pred hhhhhhh
Confidence 5554443
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.55 E-value=6.8e-07 Score=88.90 Aligned_cols=61 Identities=23% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc---CCccCCCCCCCCeEecCCC
Q 041975 213 CLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE---LPESLGQLPSLKYLNLEEN 276 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n 276 (543)
+..+|+.|-+.+|+..++ ..+.. -.+.+.|+.+++..|.... +-..-.+++.|+.|.|+++
T Consensus 318 ~~~~L~~l~l~~c~~fsd---~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSD---RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC 382 (483)
T ss_pred CCCceEEEeccccchhhh---hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence 334555555555543222 11111 2334445555555543221 2222234445555555544
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=4e-06 Score=71.14 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=60.9
Q ss_pred cceEEEECCCCCCCCCCCC----CCCCeeEEEcCCCCcccccccccccccCccccC-CcCCcEEeccccccCeecCCccc
Q 041975 91 EQRYFHWDGYPLKTLPSKI----SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGN-LSRLVTLDLRKCLRLKKVSSSLC 165 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~----~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~-l~~L~~L~L~~~~~l~~lp~~i~ 165 (543)
.+..++++.|++..++... ...+|...+|++|.+ ..+|..+.. .+.+++|+|++| .+..+|..+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f---------k~fp~kft~kf~t~t~lNl~~n-eisdvPeE~A 97 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF---------KKFPKKFTIKFPTATTLNLANN-EISDVPEELA 97 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh---------hhCCHHHhhccchhhhhhcchh-hhhhchHHHh
Confidence 4555666666665554432 445566666666666 345554432 335666666655 5555665566
Q ss_pred CCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCC
Q 041975 166 NLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPS 209 (543)
Q Consensus 166 ~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~ 209 (543)
.++.|+.|+++.|. +...|..+..+.+|-.|+..+|.+.++|.
T Consensus 98 am~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 98 AMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred hhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 66666666666644 33344445456666666666665555543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00025 Score=64.40 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=25.3
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCL 179 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 179 (543)
.+...+||++|.+.. ++ .+..+++|.+|.|++|.....-|.--.-+++|+.|.|.+|+
T Consensus 42 d~~d~iDLtdNdl~~---------l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---------LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccceecccccchhh---------cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 344555555555531 11 13345555555555542222222211223445555555544
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.34 E-value=7e-06 Score=81.83 Aligned_cols=227 Identities=18% Similarity=0.217 Sum_probs=124.0
Q ss_pred CccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC----C--CCCCeeEEEcCCC-Ccccccccccc
Q 041975 61 RLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK----I--SPEHLVSLEMPNS-NIEQLWNDVQL 133 (543)
Q Consensus 61 ~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~----~--~l~~L~~L~L~~n-~l~~l~~~~~l 133 (543)
.||.|.++++.. ....-...+....+++..|.+.++. .+... + .+.+|++|+|..+ .|+.
T Consensus 139 ~lk~LSlrG~r~----v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~------- 205 (483)
T KOG4341|consen 139 FLKELSLRGCRA----VGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITD------- 205 (483)
T ss_pred cccccccccccc----CCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHH-------
Confidence 467777777641 1111222333333467777666664 12111 1 4667777777663 3331
Q ss_pred cccCccccCCcCCcEEeccccccCee--cCCcccCCCCCCEEeccCCCCCCcCCccc----CCCCCCceeeccCcc-ccc
Q 041975 134 EELPSSIGNLSRLVTLDLRKCLRLKK--VSSSLCNLKSLESLYLSGCLKLEKLPEEI----GNLGSLKNMVANEIA-ISQ 206 (543)
Q Consensus 134 ~~lp~~l~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l----~~l~~L~~L~l~~~~-i~~ 206 (543)
..+-.-...+++|++|++++|..+.. +.....+.+.++.+.+.||.-.+. +.+ +.+.-+..+++..+. ++.
T Consensus 206 ~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 206 VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccc
Confidence 11111234577788888887755443 112234455666666666653322 111 122334444444432 221
Q ss_pred --cCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCC-CCc--CCccCCCCCCCCeEecCCCCCc-
Q 041975 207 --VPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCN-IIE--LPESLGQLPSLKYLNLEENNFE- 279 (543)
Q Consensus 207 --lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~L~~L~Ls~n~l~- 279 (543)
+-..-..+..|+.|..++|...++ ..+-. -.+..+|+.|-++.|+ +++ +-..-.+.+.|+.|++.++...
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d---~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITD---EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCch---HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 111123457788888888876443 11112 3466889999999984 554 2222345788999999988544
Q ss_pred --cCCccccCCCCCCEEecccccccccC
Q 041975 280 --KIPSNIKQVSKLSLLILDNWKRFLSL 305 (543)
Q Consensus 280 --~lp~~l~~l~~L~~L~L~~~~~l~~l 305 (543)
++..--.+++.|+.|.+++|...+..
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhh
Confidence 34433457889999999999766543
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.33 E-value=2.5e-05 Score=73.82 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCC----CCCC--------CCCCCCeeEEEcCC
Q 041975 54 SIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLK----TLPS--------KISPEHLVSLEMPN 121 (543)
Q Consensus 54 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~----~lp~--------~~~l~~L~~L~L~~ 121 (543)
..+..|..+..+++++|.+++. ....+...+..- ++|+..+++.--.. .+++ ...+++|+..+||.
T Consensus 24 eel~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~-~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTE-AMEELCNVIANV-RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHhhcceeEEeccCCcccHH-HHHHHHHHHhhh-cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 3455578888888888873221 111122223333 36666666543211 1221 22456666666666
Q ss_pred CCcccccccccccccCc----cccCCcCCcEEecccc
Q 041975 122 SNIEQLWNDVQLEELPS----SIGNLSRLVTLDLRKC 154 (543)
Q Consensus 122 n~l~~l~~~~~l~~lp~----~l~~l~~L~~L~L~~~ 154 (543)
|.+. .+.|. -|++-+.|++|.|++|
T Consensus 102 NAfg--------~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 102 NAFG--------SEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cccC--------cccchHHHHHHhcCCCceeEEeecC
Confidence 6554 23332 2344556666666655
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=9.6e-05 Score=81.51 Aligned_cols=104 Identities=25% Similarity=0.249 Sum_probs=48.7
Q ss_pred cceEEEECCCCCC--CCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC--Cccc
Q 041975 91 EQRYFHWDGYPLK--TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS--SSLC 165 (543)
Q Consensus 91 ~Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp--~~i~ 165 (543)
+|+.|.+.+-.+. .+.... ++++|..||+++++++.+ ..+++|++|+.|.+.+= ....-. ..+.
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~GIS~LknLq~L~mrnL-e~e~~~~l~~LF 217 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SGISRLKNLQVLSMRNL-EFESYQDLIDLF 217 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HHHhccccHHHHhccCC-CCCchhhHHHHh
Confidence 5666665554431 111111 455666666666655422 23555566666655532 111111 1244
Q ss_pred CCCCCCEEeccCCCCCCcC------CcccCCCCCCceeeccCcccc
Q 041975 166 NLKSLESLYLSGCLKLEKL------PEEIGNLGSLKNMVANEIAIS 205 (543)
Q Consensus 166 ~l~~L~~L~Ls~~~~~~~~------p~~l~~l~~L~~L~l~~~~i~ 205 (543)
+|++|++||+|........ -+.-..+++|+.||.+++.+.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5666666666653322211 011123566677777666554
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00056 Score=64.69 Aligned_cols=82 Identities=26% Similarity=0.271 Sum_probs=51.1
Q ss_pred CCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCC--CCCc-CCccCCCCCCCCeEecCCCCCccCC--ccccCC
Q 041975 214 LNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINC--NIIE-LPESLGQLPSLKYLNLEENNFEKIP--SNIKQV 288 (543)
Q Consensus 214 l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n--~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l 288 (543)
+..|+.|++.++.+++ +..+..+++|+.|.++.| ++.. ++.....+++|++|++++|++..+. ..+..+
T Consensus 42 ~~~le~ls~~n~gltt------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccchhhhhhhccceee------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 3455555555555444 344556667778888877 4443 5555556688888888888776321 235566
Q ss_pred CCCCEEecccccc
Q 041975 289 SKLSLLILDNWKR 301 (543)
Q Consensus 289 ~~L~~L~L~~~~~ 301 (543)
.+|..|++.+|.-
T Consensus 116 ~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 116 ENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCc
Confidence 7777777777743
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0019 Score=61.14 Aligned_cols=40 Identities=23% Similarity=0.077 Sum_probs=18.2
Q ss_pred CCCCCCEEeccCC--CCCCcCCcccCCCCCCceeeccCcccc
Q 041975 166 NLKSLESLYLSGC--LKLEKLPEEIGNLGSLKNMVANEIAIS 205 (543)
Q Consensus 166 ~l~~L~~L~Ls~~--~~~~~~p~~l~~l~~L~~L~l~~~~i~ 205 (543)
.|++|++|.++.| ...+.++.-...+++|++|++++|+++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3445555555554 333333333333445555555555444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.17 E-value=0.028 Score=48.15 Aligned_cols=106 Identities=17% Similarity=0.307 Sum_probs=53.1
Q ss_pred cChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC--CCCCeeEEEcCCCCccccc
Q 041975 51 MHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI--SPEHLVSLEMPNSNIEQLW 128 (543)
Q Consensus 51 i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~l~~l~ 128 (543)
+...+|.++++|+.+.+... ....-...+.... +|+.+.+.++ +..++... +++.|+.+.+.. .+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~~------~~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~--- 70 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNT------IKKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK--- 70 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--------EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT----
T ss_pred ECHHHHhCCCCCCEEEECCC------eeEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc-ccc---
Confidence 45678888888888888642 2333334455554 7888888774 66666543 566788888865 332
Q ss_pred ccccccccC-ccccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccC
Q 041975 129 NDVQLEELP-SSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSG 177 (543)
Q Consensus 129 ~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~ 177 (543)
.++ ..+..+++|+.+++..+ +..++ ..+.+. +|+.+.+..
T Consensus 71 ------~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 71 ------SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ------EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ------ccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 222 24556777887777643 33443 334554 777776654
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.60 E-value=0.0005 Score=73.41 Aligned_cols=131 Identities=23% Similarity=0.276 Sum_probs=60.2
Q ss_pred CCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCC-CCc--CCccCCCCCCCCeEecCCCCCc---cCCccc
Q 041975 213 CLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCN-IIE--LPESLGQLPSLKYLNLEENNFE---KIPSNI 285 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l 285 (543)
.+++|+.|+++.+....+ ..+.. ...+++|+.|.+.+|. +++ +-.....+++|++|+|+++... .+....
T Consensus 241 ~~~~L~~l~l~~~~~isd---~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTD---IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hcCCcCccchhhhhccCc---hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 345566666666553221 11222 2225566666666664 443 3334445666677776666332 222223
Q ss_pred cCCCCCCEEeccccc---ccccCC-----CCC-CCc-EEeecCCCCCccccCCcccccCCcc-eeeecccCCC
Q 041975 286 KQVSKLSLLILDNWK---RFLSLP-----ELP-CGS-SVYARHCTSLETLSNLSTLFKPLCQ-KFDFCNCFKL 347 (543)
Q Consensus 286 ~~l~~L~~L~L~~~~---~l~~lp-----~lp-~~~-~l~~~~c~~L~~l~~~~~~~~~~~~-~~~~~~c~~L 347 (543)
.++++|+.|.+..+. .++.+- ... ... .+.+.+|+.++.+...... ..... ......|++|
T Consensus 318 ~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 318 KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 345544444433332 222211 122 122 5566667777666544332 11112 3455566666
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.00059 Score=64.93 Aligned_cols=58 Identities=36% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCC--ccCCCCCCCCeEecCCC
Q 041975 213 CLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELP--ESLGQLPSLKYLNLEEN 276 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n 276 (543)
.++.|++|.|+-|++.+ +..+..+++|++|+|..|.|.++- .-+.++++|+.|.|..|
T Consensus 39 kMp~lEVLsLSvNkIss------L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS------LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeecccccc------chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 34444444444444333 333444444444444444444321 12344555555555554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0006 Score=64.89 Aligned_cols=84 Identities=23% Similarity=0.222 Sum_probs=39.6
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCC--cccCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSS--SLCNLK 168 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~i~~l~ 168 (543)
+.+.|+..||.+..|.-.-.++.|++|.|+-|+|+.+ ..+..+++|+.|.|..| .+.++.+ .+.+++
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL----------~pl~rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL----------APLQRCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc----------hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 3444444444444433222455555555555555321 12445555555555544 2222221 134566
Q ss_pred CCCEEeccCCCCCCcCC
Q 041975 169 SLESLYLSGCLKLEKLP 185 (543)
Q Consensus 169 ~L~~L~Ls~~~~~~~~p 185 (543)
+|+.|.|..|.-.+.-+
T Consensus 89 sLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAG 105 (388)
T ss_pred hhhhHhhccCCcccccc
Confidence 66666666655554433
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.18 E-value=0.00093 Score=71.30 Aligned_cols=196 Identities=22% Similarity=0.290 Sum_probs=100.0
Q ss_pred CCcCCcEEeccccccCee--cCCcccCCCCCCEEeccCC-CCCCcCC----cccCCCCCCceeeccCcc-cccc--CCCC
Q 041975 142 NLSRLVTLDLRKCLRLKK--VSSSLCNLKSLESLYLSGC-LKLEKLP----EEIGNLGSLKNMVANEIA-ISQV--PSSI 211 (543)
Q Consensus 142 ~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~-~~~~~~p----~~l~~l~~L~~L~l~~~~-i~~l--p~~i 211 (543)
.++.|+.|.+.+|..+.. +-......+.|+.|++++| ......+ .....+.+|+.|+++.+. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356777777777655554 2233456677777777763 2222211 123345667777776665 3311 1111
Q ss_pred CCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCC-c--CCccCCCCCCCCeEecCCCC----Ccc---
Q 041975 212 SCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNII-E--LPESLGQLPSLKYLNLEENN----FEK--- 280 (543)
Q Consensus 212 ~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~-~--lp~~l~~l~~L~~L~Ls~n~----l~~--- 280 (543)
..+++|+.|.+.+|...++ ..+-. ...+++|++|++++|... + +.....++++|+.|.+.... ++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~---~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTD---EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred hhCCCcceEccCCCCccch---hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 2366777777776763221 11222 456677888888877432 2 33333345555554433322 110
Q ss_pred -----------CCccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCC-ccccCCcccccCCcceeeecccCCC
Q 041975 281 -----------IPSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSL-ETLSNLSTLFKPLCQKFDFCNCFKL 347 (543)
Q Consensus 281 -----------lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L-~~l~~~~~~~~~~~~~~~~~~c~~L 347 (543)
....+..+++|+.+.+..|. ..... ..+.+.+|+.| +.+......... ...+.+..|...
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~-----~~~~l~gc~~l~~~l~~~~~~~~~-l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG-----LELSLRGCPNLTESLELRLCRSDS-LRVLNLSDCRLV 414 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc-----hHHHhcCCcccchHHHHHhccCCc-cceEecccCccc
Confidence 00123456666666666664 22211 14567889988 444332221111 456777777665
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.0076 Score=34.40 Aligned_cols=17 Identities=53% Similarity=0.919 Sum_probs=7.7
Q ss_pred CCeEecCCCCCccCCcc
Q 041975 268 LKYLNLEENNFEKIPSN 284 (543)
Q Consensus 268 L~~L~Ls~n~l~~lp~~ 284 (543)
|++|+|++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.89 E-value=0.01 Score=33.83 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=17.4
Q ss_pred CCCeEeccCCCCCcCCccCCCC
Q 041975 244 ILENLSLINCNIIELPESLGQL 265 (543)
Q Consensus 244 ~L~~L~Ls~n~l~~lp~~l~~l 265 (543)
+|++|++++|+++.+|..+++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4789999999999888876653
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.12 E-value=0.19 Score=42.88 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=12.7
Q ss_pred ccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccC
Q 041975 140 IGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSG 177 (543)
Q Consensus 140 l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~ 177 (543)
+.++++|+.+.+.. .+..++ ..+.++++|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 44455555555542 233333 2244444555555544
No 73
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=93.83 E-value=0.041 Score=30.37 Aligned_cols=19 Identities=53% Similarity=1.011 Sum_probs=17.3
Q ss_pred CeeEEEcCCCCcccccccc
Q 041975 113 HLVSLEMPNSNIEQLWNDV 131 (543)
Q Consensus 113 ~L~~L~L~~n~l~~l~~~~ 131 (543)
+|++|+|.+++++++|+|+
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 5899999999999999984
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.74 E-value=0.038 Score=29.32 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=4.1
Q ss_pred CCeEecCCCCCcc
Q 041975 268 LKYLNLEENNFEK 280 (543)
Q Consensus 268 L~~L~Ls~n~l~~ 280 (543)
|+.|+|++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444444333
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.50 E-value=0.00027 Score=74.68 Aligned_cols=184 Identities=21% Similarity=0.242 Sum_probs=100.2
Q ss_pred eeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCee----cCCcccCC-CCCCEEeccCCCCCCc----C
Q 041975 114 LVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKK----VSSSLCNL-KSLESLYLSGCLKLEK----L 184 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~----lp~~i~~l-~~L~~L~Ls~~~~~~~----~ 184 (543)
+..|.|.+|.+..- ....+-..+.....|+.|++++|..... +-..+... ..|++|++..|..... +
T Consensus 89 l~~L~L~~~~l~~~----~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDR----GAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccc----hHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 55555555555311 1123333445556666666666533211 11112222 4455666666655432 2
Q ss_pred CcccCCCCCCceeeccCcccc-----ccCCCC----CCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCC-CCeEeccCC
Q 041975 185 PEEIGNLGSLKNMVANEIAIS-----QVPSSI----SCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQI-LENLSLINC 253 (543)
Q Consensus 185 p~~l~~l~~L~~L~l~~~~i~-----~lp~~i----~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~-L~~L~Ls~n 253 (543)
...+.....++.++++.|.+. .++..+ ....++++|++..|..+..... .+.. +...++ +..|++..|
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~-~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA-LLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH-HHHHHHhccchhhHHHHHHhc
Confidence 334444566666777666653 122223 3467778888888776532110 0111 334444 666888888
Q ss_pred CCCc-----CCccCCCC-CCCCeEecCCCCCc-----cCCccccCCCCCCEEeccccccc
Q 041975 254 NIIE-----LPESLGQL-PSLKYLNLEENNFE-----KIPSNIKQVSKLSLLILDNWKRF 302 (543)
Q Consensus 254 ~l~~-----lp~~l~~l-~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~~l 302 (543)
.+.+ +...+..+ ..++.++++.|.++ .+...+..++.++.|.++.|+..
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 7764 34445555 67788888888776 34455667778888888887643
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.21 E-value=0.054 Score=28.71 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=9.2
Q ss_pred CCCCeEeccCCCCCcCC
Q 041975 243 QILENLSLINCNIIELP 259 (543)
Q Consensus 243 ~~L~~L~Ls~n~l~~lp 259 (543)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35777777777776655
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.46 E-value=0.00059 Score=72.19 Aligned_cols=89 Identities=24% Similarity=0.240 Sum_probs=52.1
Q ss_pred CCCCceeeccCccccc-----cCCCCCCCCC-CcEEEccCcCCCCCCCCCCCCccccC-CCCCeEeccCCCCCc-----C
Q 041975 191 LGSLKNMVANEIAISQ-----VPSSISCLNR-VELLSFAGCKGRPPQMGLKLPILFQS-QILENLSLINCNIIE-----L 258 (543)
Q Consensus 191 l~~L~~L~l~~~~i~~-----lp~~i~~l~~-L~~L~L~~~~~~~~~~~~~lp~~~~l-~~L~~L~Ls~n~l~~-----l 258 (543)
..++++|.+.++.++. +...+...+. +..|++..|...........|.+..+ ..++.++++.|.+++ +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4556666666655541 1122333444 55566666664432100111224444 677888888888875 5
Q ss_pred CccCCCCCCCCeEecCCCCCc
Q 041975 259 PESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 259 p~~l~~l~~L~~L~Ls~n~l~ 279 (543)
...+..++.+++|.++.|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 566677788999999988776
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=0.028 Score=51.39 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=17.7
Q ss_pred CCCCeEecCCC-CCcc-CCccccCCCCCCEEecccc
Q 041975 266 PSLKYLNLEEN-NFEK-IPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 266 ~~L~~L~Ls~n-~l~~-lp~~l~~l~~L~~L~L~~~ 299 (543)
++|+.|+|++| +|++ --.++..+++|+.|.+.+-
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 45555555555 4441 1134555666666655543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.64 E-value=0.26 Score=29.12 Aligned_cols=20 Identities=35% Similarity=0.763 Sum_probs=14.1
Q ss_pred CCCCCeEecCCCCCccCCcc
Q 041975 265 LPSLKYLNLEENNFEKIPSN 284 (543)
Q Consensus 265 l~~L~~L~Ls~n~l~~lp~~ 284 (543)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777754
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.64 E-value=0.26 Score=29.12 Aligned_cols=20 Identities=35% Similarity=0.763 Sum_probs=14.1
Q ss_pred CCCCCeEecCCCCCccCCcc
Q 041975 265 LPSLKYLNLEENNFEKIPSN 284 (543)
Q Consensus 265 l~~L~~L~Ls~n~l~~lp~~ 284 (543)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777754
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.88 E-value=0.0094 Score=55.54 Aligned_cols=87 Identities=20% Similarity=0.121 Sum_probs=69.1
Q ss_pred CCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCC
Q 041975 211 ISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVS 289 (543)
Q Consensus 211 i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 289 (543)
+......+.||++.|++.. +.. ++.+..|..|+++.|.+.-+|..++.+..+..+++..|+.+..|.+.+..+
T Consensus 38 i~~~kr~tvld~~s~r~vn------~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN------LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred hhccceeeeehhhhhHHHh------hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 4455667777777776544 222 666777888899988888899999988888999999999999999999999
Q ss_pred CCCEEecccccccc
Q 041975 290 KLSLLILDNWKRFL 303 (543)
Q Consensus 290 ~L~~L~L~~~~~l~ 303 (543)
.++++++.+++...
T Consensus 112 ~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 112 HPKKNEQKKTEFFR 125 (326)
T ss_pred CcchhhhccCcchH
Confidence 99999998887543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.74 E-value=0.028 Score=52.48 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=58.0
Q ss_pred hHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCcccccccc
Q 041975 53 PSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDV 131 (543)
Q Consensus 53 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~ 131 (543)
-..+...++.+.|+++.|. ...+-..+.-+. .|..|+++.|.++.+|..+ +...++.+++..|..
T Consensus 35 v~ei~~~kr~tvld~~s~r------~vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~------- 100 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNR------LVNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH------- 100 (326)
T ss_pred hhhhhccceeeeehhhhhH------HHhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch-------
Confidence 3455666677777777663 334444555554 6777777777777777777 666777777777766
Q ss_pred cccccCccccCCcCCcEEeccccc
Q 041975 132 QLEELPSSIGNLSRLVTLDLRKCL 155 (543)
Q Consensus 132 ~l~~lp~~l~~l~~L~~L~L~~~~ 155 (543)
...|.+++.+++++++++.++.
T Consensus 101 --~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 101 --SQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred --hhCCccccccCCcchhhhccCc
Confidence 3567777777777777777664
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.26 E-value=0.64 Score=27.41 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCCCCeEeccCCCCCcCCccC
Q 041975 242 SQILENLSLINCNIIELPESL 262 (543)
Q Consensus 242 l~~L~~L~Ls~n~l~~lp~~l 262 (543)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357888899999888887654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.26 E-value=0.64 Score=27.41 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCCCCeEeccCCCCCcCCccC
Q 041975 242 SQILENLSLINCNIIELPESL 262 (543)
Q Consensus 242 l~~L~~L~Ls~n~l~~lp~~l 262 (543)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357888899999888887654
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.40 E-value=0.35 Score=44.42 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=57.7
Q ss_pred CCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC-Cccc-CCCCCCEEeccCCCC
Q 041975 104 TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLC-NLKSLESLYLSGCLK 180 (543)
Q Consensus 104 ~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~-~l~~L~~L~Ls~~~~ 180 (543)
++|... .-..++.+|-+++.|. .+--+.+.+++.++.|.+.+|+.....- +.++ -.++|+.|++++|..
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~--------~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIM--------YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHH--------HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe
Confidence 444432 3345788898988876 2333456788888999999887665321 1121 357899999999987
Q ss_pred CCcCC-cccCCCCCCceeeccC
Q 041975 181 LEKLP-EEIGNLGSLKNMVANE 201 (543)
Q Consensus 181 ~~~~p-~~l~~l~~L~~L~l~~ 201 (543)
+++.. ..+..+++|+.|.+.+
T Consensus 164 IT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 164 ITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred echhHHHHHHHhhhhHHHHhcC
Confidence 65532 2355667777776654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.43 E-value=1.2 Score=26.37 Aligned_cols=18 Identities=44% Similarity=0.780 Sum_probs=12.1
Q ss_pred CCCCeEecCCCCCccCCc
Q 041975 266 PSLKYLNLEENNFEKIPS 283 (543)
Q Consensus 266 ~~L~~L~Ls~n~l~~lp~ 283 (543)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356677777777777664
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.49 E-value=1.4 Score=26.15 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=11.5
Q ss_pred cceEEEECCCCCCCCCC
Q 041975 91 EQRYFHWDGYPLKTLPS 107 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~ 107 (543)
+|++|+.++|.++++|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666777776666665
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.58 E-value=5.1 Score=23.84 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=10.3
Q ss_pred CCCCeEecCCCCCccC
Q 041975 266 PSLKYLNLEENNFEKI 281 (543)
Q Consensus 266 ~~L~~L~Ls~n~l~~l 281 (543)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4667777777766544
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.68 E-value=4.2 Score=23.28 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=6.5
Q ss_pred CCCCeEecCCCCCc
Q 041975 266 PSLKYLNLEENNFE 279 (543)
Q Consensus 266 ~~L~~L~Ls~n~l~ 279 (543)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555543
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.58 E-value=7.5 Score=22.81 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=10.9
Q ss_pred CCCCCEEecccccccc
Q 041975 288 VSKLSLLILDNWKRFL 303 (543)
Q Consensus 288 l~~L~~L~L~~~~~l~ 303 (543)
+++|+.|+|++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3677777777776553
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.60 E-value=15 Score=22.04 Aligned_cols=14 Identities=43% Similarity=0.736 Sum_probs=9.3
Q ss_pred CCCCeEecCCCCCc
Q 041975 266 PSLKYLNLEENNFE 279 (543)
Q Consensus 266 ~~L~~L~Ls~n~l~ 279 (543)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.38 E-value=10 Score=40.36 Aligned_cols=18 Identities=28% Similarity=0.909 Sum_probs=12.6
Q ss_pred CC-CCCcceeEEEEEeeCC
Q 041975 414 WF-YNNFVGFALCAIFPEF 431 (543)
Q Consensus 414 ~~-~~~~~g~~~c~v~~~~ 431 (543)
|+ ..+.+||++-.||.+.
T Consensus 440 ~~~~~~~l~ftv~G~f~d~ 458 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFRDG 458 (585)
T ss_pred eecccceEEEEEEEEeecC
Confidence 44 4566889888888543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.94 E-value=17 Score=38.82 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=5.4
Q ss_pred CCCeEEEEe
Q 041975 474 ESDHVLLGY 482 (543)
Q Consensus 474 ~sdh~~~~y 482 (543)
-+|.+++.+
T Consensus 489 v~d~Lfi~~ 497 (585)
T KOG3763|consen 489 VNDQLFIAS 497 (585)
T ss_pred EeceeEEee
Confidence 356666665
No 94
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.45 E-value=1.4e+02 Score=19.87 Aligned_cols=10 Identities=0% Similarity=0.092 Sum_probs=5.6
Q ss_pred ccccceEEEE
Q 041975 88 LFNEQRYFHW 97 (543)
Q Consensus 88 l~~~Lr~L~l 97 (543)
+|.++++|.+
T Consensus 10 iP~~l~~L~~ 19 (44)
T PF05725_consen 10 IPSSLKSLIF 19 (44)
T ss_pred eCCCCeEEEE
Confidence 3445666666
Done!