Query 041975
Match_columns 543
No_of_seqs 692 out of 3863
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:56:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 4.5E-28 1.5E-32 243.2 13.0 252 34-306 50-308 (313)
2 3rgz_A Protein brassinosteroid 99.9 8E-27 2.7E-31 262.1 19.7 234 59-306 393-697 (768)
3 4fcg_A Uncharacterized protein 99.9 1.4E-26 4.7E-31 233.9 19.1 220 58-299 79-311 (328)
4 2id5_A Lingo-1, leucine rich r 99.9 2.9E-25 9.8E-30 235.8 25.9 248 34-302 32-285 (477)
5 3rgz_A Protein brassinosteroid 99.9 4.3E-26 1.5E-30 256.2 20.2 237 52-307 410-722 (768)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-26 4.6E-31 232.4 14.4 243 60-330 50-301 (313)
7 4fcg_A Uncharacterized protein 99.9 4.3E-26 1.5E-30 230.3 18.1 218 90-330 81-311 (328)
8 3v47_A TOLL-like receptor 5B a 99.9 3E-25 1E-29 234.0 23.6 248 34-302 30-360 (455)
9 2z7x_B TOLL-like receptor 1, v 99.9 7E-25 2.4E-29 235.4 23.6 267 34-319 21-409 (520)
10 4eco_A Uncharacterized protein 99.9 1.9E-25 6.6E-30 245.4 19.3 252 34-306 81-449 (636)
11 3o6n_A APL1; leucine-rich repe 99.9 1.2E-24 4.1E-29 224.9 23.4 258 34-320 45-329 (390)
12 3oja_B Anopheles plasmodium-re 99.9 1.8E-24 6.2E-29 236.1 23.5 250 43-319 58-334 (597)
13 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.8E-24 1.3E-28 232.0 25.5 138 34-190 52-193 (562)
14 3v47_A TOLL-like receptor 5B a 99.9 1.7E-24 5.9E-29 228.2 22.0 283 32-349 52-416 (455)
15 4ecn_A Leucine-rich repeat pro 99.9 9.6E-25 3.3E-29 245.2 20.2 254 33-306 322-689 (876)
16 4eco_A Uncharacterized protein 99.9 1.1E-24 3.6E-29 239.6 20.0 286 32-346 271-599 (636)
17 3bz5_A Internalin-J, INLJ; leu 99.9 7.7E-24 2.6E-28 223.3 24.1 208 34-282 42-249 (457)
18 2id5_A Lingo-1, leucine rich r 99.9 3.8E-24 1.3E-28 227.2 21.7 273 32-334 54-334 (477)
19 1xku_A Decorin; proteoglycan, 99.9 1.3E-23 4.3E-28 212.2 23.8 209 51-282 67-279 (330)
20 2ft3_A Biglycan; proteoglycan, 99.9 7.3E-24 2.5E-28 214.2 22.0 215 60-300 54-275 (332)
21 2z81_A CD282 antigen, TOLL-lik 99.9 7.1E-24 2.4E-28 229.0 22.5 265 34-319 26-441 (549)
22 3t6q_A CD180 antigen; protein- 99.9 1.8E-23 6E-28 228.7 25.2 250 34-306 33-342 (606)
23 4fmz_A Internalin; leucine ric 99.9 2.4E-23 8.1E-28 211.5 24.0 234 33-300 43-276 (347)
24 3t6q_A CD180 antigen; protein- 99.9 1.4E-23 4.8E-28 229.5 23.4 249 35-305 255-516 (606)
25 3o6n_A APL1; leucine-rich repe 99.9 8.2E-24 2.8E-28 218.7 20.3 262 34-333 69-352 (390)
26 4ecn_A Leucine-rich repeat pro 99.9 1.2E-23 4.1E-28 236.4 23.2 287 32-347 513-840 (876)
27 2ft3_A Biglycan; proteoglycan, 99.9 2.4E-23 8.1E-28 210.4 22.6 242 34-302 54-307 (332)
28 1xku_A Decorin; proteoglycan, 99.9 1.8E-23 6.3E-28 211.0 21.5 222 60-306 52-279 (330)
29 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-23 4.4E-28 225.5 20.9 83 32-125 43-128 (520)
30 4fmz_A Internalin; leucine ric 99.9 6.6E-23 2.3E-27 208.2 24.4 255 32-320 64-322 (347)
31 2z66_A Variable lymphocyte rec 99.9 1.1E-23 3.7E-28 210.3 17.5 201 91-302 29-236 (306)
32 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-23 9E-28 227.3 22.0 253 34-305 32-344 (606)
33 3zyi_A Leucine-rich repeat-con 99.9 4.6E-23 1.6E-27 217.4 22.5 223 90-334 75-304 (452)
34 2z80_A TOLL-like receptor 2, v 99.9 2.1E-24 7.1E-29 220.1 11.3 246 60-334 52-315 (353)
35 3oja_B Anopheles plasmodium-re 99.9 2E-23 6.8E-28 227.9 19.9 263 34-333 75-358 (597)
36 3zyj_A Leucine-rich repeat-con 99.9 4.4E-23 1.5E-27 216.7 21.8 223 90-334 64-293 (440)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.4E-23 1.5E-27 223.6 22.1 278 32-334 74-511 (562)
38 1ziw_A TOLL-like receptor 3; i 99.9 2E-23 6.9E-28 231.4 19.8 247 34-301 25-308 (680)
39 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-22 3.7E-27 230.8 25.5 179 33-227 23-216 (844)
40 1ozn_A Reticulon 4 receptor; N 99.9 8.9E-23 3E-27 201.6 21.5 197 90-300 32-236 (285)
41 1o6v_A Internalin A; bacterial 99.9 1.4E-22 4.7E-27 214.6 23.5 233 34-300 46-298 (466)
42 3vq2_A TLR4, TOLL-like recepto 99.9 2.9E-23 1E-27 226.9 18.8 273 31-336 282-561 (606)
43 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-22 4E-27 230.6 23.7 264 32-315 46-387 (844)
44 2z66_A Variable lymphocyte rec 99.9 1.6E-22 5.4E-27 201.8 19.7 220 60-301 28-260 (306)
45 1o6v_A Internalin A; bacterial 99.9 5.2E-22 1.8E-26 210.1 24.3 246 32-303 66-323 (466)
46 2z63_A TOLL-like receptor 4, v 99.9 1.2E-22 4.3E-27 220.1 20.0 113 188-302 278-409 (570)
47 3o53_A Protein LRIM1, AGAP0063 99.9 4.7E-24 1.6E-28 214.3 7.9 221 54-302 28-250 (317)
48 2z63_A TOLL-like receptor 4, v 99.9 1.4E-22 4.7E-27 219.7 19.7 253 34-306 28-342 (570)
49 3zyj_A Leucine-rich repeat-con 99.9 6.7E-22 2.3E-26 207.7 24.0 221 60-301 64-291 (440)
50 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-21 5.7E-26 205.4 26.8 210 54-302 36-246 (457)
51 3zyi_A Leucine-rich repeat-con 99.9 7E-22 2.4E-26 208.3 23.7 221 60-301 75-302 (452)
52 2z81_A CD282 antigen, TOLL-lik 99.9 9.7E-23 3.3E-27 220.0 17.4 148 190-345 332-508 (549)
53 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-21 5.6E-26 216.0 27.7 252 36-300 250-571 (680)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-23 6.1E-28 210.0 10.2 240 34-304 34-277 (317)
55 1jl5_A Outer protein YOPM; leu 99.9 3.7E-22 1.2E-26 210.3 19.1 252 34-319 11-287 (454)
56 3oja_A Leucine-rich immune mol 99.9 1.1E-22 3.7E-27 216.3 14.9 214 61-302 35-250 (487)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-21 5.9E-26 192.3 22.0 221 92-334 13-239 (285)
58 1p9a_G Platelet glycoprotein I 99.9 2.5E-21 8.6E-26 191.7 22.4 197 85-300 6-206 (290)
59 2z62_A TOLL-like receptor 4, v 99.9 7.6E-22 2.6E-26 193.9 18.5 199 89-301 27-236 (276)
60 4g8a_A TOLL-like receptor 4; l 99.9 5.4E-22 1.9E-26 217.4 17.7 137 35-188 53-193 (635)
61 2z80_A TOLL-like receptor 2, v 99.9 4.6E-22 1.6E-26 202.7 15.2 252 34-303 52-315 (353)
62 3oja_A Leucine-rich immune mol 99.9 9.5E-23 3.2E-27 216.8 10.0 236 33-299 33-272 (487)
63 2o6q_A Variable lymphocyte rec 99.9 1.1E-20 3.7E-25 185.1 22.9 195 90-301 16-217 (270)
64 1wwl_A Monocyte differentiatio 99.9 6.5E-23 2.2E-27 205.4 6.9 220 62-301 65-308 (312)
65 1jl5_A Outer protein YOPM; leu 99.9 3.8E-20 1.3E-24 194.8 27.7 216 60-319 91-307 (454)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-20 5E-25 204.6 22.1 237 35-330 41-294 (622)
67 1h6u_A Internalin H; cell adhe 99.9 5.7E-21 2E-25 190.9 16.7 192 86-301 38-229 (308)
68 2z62_A TOLL-like receptor 4, v 99.9 3.4E-20 1.1E-24 182.1 21.0 226 94-347 11-243 (276)
69 1wwl_A Monocyte differentiatio 99.9 1.2E-21 4.2E-26 196.1 10.7 200 58-280 93-310 (312)
70 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-19 5.7E-24 196.2 26.8 238 60-345 40-295 (622)
71 4g8a_A TOLL-like receptor 4; l 99.8 5.2E-20 1.8E-24 201.6 22.8 164 162-336 414-583 (635)
72 1p9a_G Platelet glycoprotein I 99.8 2.7E-20 9.2E-25 184.3 18.3 199 55-279 5-208 (290)
73 1h6u_A Internalin H; cell adhe 99.8 9.3E-21 3.2E-25 189.3 15.0 199 56-284 37-235 (308)
74 3rfs_A Internalin B, repeat mo 99.8 2.5E-20 8.6E-25 182.8 16.8 200 85-307 37-240 (272)
75 2o6q_A Variable lymphocyte rec 99.8 1.5E-19 5.1E-24 177.0 21.6 194 61-279 17-218 (270)
76 2xwt_C Thyrotropin receptor; s 99.8 4.4E-20 1.5E-24 177.3 16.5 193 89-300 30-237 (239)
77 3rfs_A Internalin B, repeat mo 99.8 2.8E-20 9.6E-25 182.4 14.9 209 55-290 36-247 (272)
78 2xwt_C Thyrotropin receptor; s 99.8 1.1E-19 3.7E-24 174.6 16.4 186 102-306 23-221 (239)
79 4glp_A Monocyte differentiatio 99.8 5.7E-20 2E-24 183.7 12.8 225 58-301 62-306 (310)
80 3m19_A Variable lymphocyte rec 99.8 9.2E-19 3.1E-23 169.5 20.2 173 91-300 15-190 (251)
81 2ca6_A RAN GTPase-activating p 99.8 2.9E-21 9.9E-26 199.3 0.7 243 53-302 25-316 (386)
82 3m19_A Variable lymphocyte rec 99.8 1.8E-18 6.2E-23 167.4 19.4 173 146-334 16-193 (251)
83 3cvr_A Invasion plasmid antige 99.8 8.1E-19 2.8E-23 188.6 18.6 156 91-279 81-243 (571)
84 4glp_A Monocyte differentiatio 99.8 2.3E-19 8E-24 179.3 11.9 200 57-280 88-308 (310)
85 4ay9_X Follicle-stimulating ho 99.8 5.1E-18 1.7E-22 172.6 19.4 201 90-306 30-240 (350)
86 2ast_B S-phase kinase-associat 99.8 2.2E-20 7.5E-25 188.7 -0.3 220 61-299 48-282 (336)
87 3cvr_A Invasion plasmid antige 99.8 1.8E-18 6.1E-23 186.0 14.3 182 90-306 59-247 (571)
88 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8.2E-23 170.4 14.1 166 91-301 47-212 (291)
89 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.7E-23 171.0 13.1 169 140-330 42-210 (291)
90 2ast_B S-phase kinase-associat 99.8 8.6E-20 3E-24 184.3 2.4 234 52-306 60-310 (336)
91 4ay9_X Follicle-stimulating ho 99.8 2.6E-17 9E-22 167.3 19.5 216 60-299 30-256 (350)
92 1z7x_W Ribonuclease inhibitor; 99.7 9.4E-20 3.2E-24 192.2 -1.9 259 35-301 4-296 (461)
93 1m9s_A Internalin B; cell inva 99.7 5.1E-18 1.8E-22 184.2 10.4 175 85-282 39-213 (605)
94 1m9s_A Internalin B; cell inva 99.7 2.5E-17 8.6E-22 178.8 15.2 173 57-258 40-212 (605)
95 2o6s_A Variable lymphocyte rec 99.7 4.5E-17 1.5E-21 152.7 14.7 125 93-227 10-136 (208)
96 2ca6_A RAN GTPase-activating p 99.7 8.8E-20 3E-24 188.1 -5.2 244 80-330 23-313 (386)
97 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.8E-22 163.0 8.7 148 140-301 37-184 (263)
98 1z7x_W Ribonuclease inhibitor; 99.7 9.3E-20 3.2E-24 192.2 -6.9 236 34-279 28-297 (461)
99 3goz_A Leucine-rich repeat-con 99.7 1.5E-19 5.1E-24 184.8 -5.4 239 53-301 15-296 (362)
100 3goz_A Leucine-rich repeat-con 99.7 1E-18 3.4E-23 178.6 -0.7 233 35-279 23-297 (362)
101 2o6s_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 148.7 14.1 158 89-267 27-190 (208)
102 4ezg_A Putative uncharacterize 99.7 6.8E-17 2.3E-21 150.3 10.7 148 91-255 45-193 (197)
103 4ezg_A Putative uncharacterize 99.7 8E-17 2.7E-21 149.8 11.0 150 111-278 43-193 (197)
104 1xeu_A Internalin C; cellular 99.7 3.1E-17 1.1E-21 159.9 8.1 170 91-283 20-189 (263)
105 2xot_A Amphoterin-induced prot 99.7 2.6E-16 9.1E-21 160.6 13.8 171 92-300 20-200 (361)
106 1dce_A Protein (RAB geranylger 99.7 2.2E-19 7.5E-24 193.8 -10.0 174 110-301 347-545 (567)
107 3e6j_A Variable lymphocyte rec 99.7 9.7E-16 3.3E-20 146.0 16.5 147 146-301 21-171 (229)
108 3e6j_A Variable lymphocyte rec 99.7 1.5E-15 5E-20 144.8 16.2 151 91-279 20-172 (229)
109 2xot_A Amphoterin-induced prot 99.7 5.3E-16 1.8E-20 158.3 14.1 152 170-334 41-203 (361)
110 2v9t_B SLIT homolog 2 protein 99.6 2.7E-15 9.2E-20 142.0 16.6 77 93-179 14-91 (220)
111 2v9t_B SLIT homolog 2 protein 99.6 3.1E-15 1.1E-19 141.6 16.7 149 115-279 14-165 (220)
112 2v70_A SLIT-2, SLIT homolog 2 99.6 3.4E-15 1.2E-19 141.3 15.8 150 92-279 13-166 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 4.6E-15 1.6E-19 140.4 16.1 145 148-301 15-165 (220)
114 1dce_A Protein (RAB geranylger 99.6 1.4E-18 4.9E-23 187.4 -9.8 201 86-296 346-567 (567)
115 4b8c_D Glucose-repressible alc 99.6 4.3E-16 1.5E-20 173.1 4.2 156 99-276 210-369 (727)
116 2ell_A Acidic leucine-rich nuc 99.6 7.4E-15 2.5E-19 132.6 11.6 127 168-300 24-158 (168)
117 4b8c_D Glucose-repressible alc 99.6 3.6E-16 1.2E-20 173.7 2.4 191 91-299 174-369 (727)
118 2ell_A Acidic leucine-rich nuc 99.6 9.7E-15 3.3E-19 131.9 9.9 136 144-284 24-165 (168)
119 3ogk_B Coronatine-insensitive 99.5 2.4E-16 8.1E-21 171.5 -1.6 132 34-176 112-251 (592)
120 2je0_A Acidic leucine-rich nuc 99.5 1E-14 3.6E-19 128.9 8.5 125 168-298 17-149 (149)
121 3ogk_B Coronatine-insensitive 99.5 8E-16 2.7E-20 167.3 -1.2 253 34-300 192-499 (592)
122 1w8a_A SLIT protein; signaling 99.5 2.1E-13 7.1E-18 126.1 13.2 128 92-229 10-140 (192)
123 2p1m_B Transport inhibitor res 99.5 1.3E-15 4.4E-20 165.7 -2.3 107 58-176 128-243 (594)
124 2wfh_A SLIT homolog 2 protein 99.5 3.4E-13 1.2E-17 124.7 13.8 127 92-228 12-139 (193)
125 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.8E-18 126.0 8.9 102 193-301 43-152 (176)
126 2je0_A Acidic leucine-rich nuc 99.5 4.6E-14 1.6E-18 124.7 5.9 123 91-223 18-148 (149)
127 1w8a_A SLIT protein; signaling 99.4 8.2E-13 2.8E-17 122.0 13.4 38 242-279 101-139 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.9E-18 124.2 8.2 124 91-226 20-151 (176)
129 2wfh_A SLIT homolog 2 protein 99.4 1.6E-12 5.6E-17 120.1 13.9 120 172-300 14-137 (193)
130 2o6r_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 115.9 14.4 128 91-229 8-138 (177)
131 2p1m_B Transport inhibitor res 99.4 3.5E-15 1.2E-19 162.2 -7.7 224 57-297 102-346 (594)
132 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.9E-20 142.1 -10.5 129 143-279 17-153 (198)
133 2o6r_A Variable lymphocyte rec 99.4 8.8E-12 3E-16 113.3 14.8 61 240-300 73-135 (177)
134 3sb4_A Hypothetical leucine ri 99.3 3E-12 1E-16 128.7 11.1 78 214-299 225-307 (329)
135 1ds9_A Outer arm dynein; leuci 99.2 9.1E-14 3.1E-18 129.1 -8.3 152 167-326 17-180 (198)
136 3g39_A Variable lymphocyte rec 99.2 8.2E-11 2.8E-15 106.2 11.4 105 91-205 10-115 (170)
137 2r9u_A Variable lymphocyte rec 99.2 9E-11 3.1E-15 106.4 11.5 107 92-208 14-121 (174)
138 3sb4_A Hypothetical leucine ri 99.2 1.3E-10 4.3E-15 116.7 13.2 98 191-296 225-328 (329)
139 4fdw_A Leucine rich hypothetic 99.2 1.5E-09 5E-14 111.9 20.7 222 50-300 126-356 (401)
140 4fdw_A Leucine rich hypothetic 99.2 2.4E-09 8.4E-14 110.2 21.7 250 56-345 109-369 (401)
141 2r9u_A Variable lymphocyte rec 99.1 2.1E-10 7.2E-15 104.0 11.4 102 115-227 15-117 (174)
142 3g39_A Variable lymphocyte rec 99.1 2.2E-10 7.5E-15 103.4 11.3 104 114-228 11-115 (170)
143 3un9_A NLR family member X1; l 98.9 9.7E-12 3.3E-16 127.0 -7.7 39 241-279 209-252 (372)
144 2ifg_A High affinity nerve gro 98.9 5.4E-09 1.8E-13 105.5 10.4 92 135-228 23-116 (347)
145 2ifg_A High affinity nerve gro 98.9 6.6E-09 2.3E-13 104.8 10.8 103 93-206 11-117 (347)
146 3un9_A NLR family member X1; l 98.8 2.4E-11 8.4E-16 124.0 -8.2 87 214-301 154-251 (372)
147 4fs7_A Uncharacterized protein 98.8 1.5E-07 5.2E-12 96.6 19.2 193 139-348 180-391 (394)
148 2ra8_A Uncharacterized protein 98.7 2.5E-09 8.4E-14 108.4 1.1 166 30-205 103-292 (362)
149 4fs7_A Uncharacterized protein 98.7 3.1E-07 1.1E-11 94.3 16.7 272 48-350 59-371 (394)
150 4gt6_A Cell surface protein; l 98.6 4.7E-06 1.6E-10 85.4 21.0 269 50-350 53-362 (394)
151 2ra8_A Uncharacterized protein 98.6 1.6E-08 5.6E-13 102.4 2.4 62 136-200 164-227 (362)
152 4h09_A Hypothetical leucine ri 98.4 4E-05 1.4E-09 77.8 23.6 283 33-347 45-358 (379)
153 4gt6_A Cell surface protein; l 98.4 1.9E-05 6.4E-10 80.9 19.6 246 50-330 77-367 (394)
154 1io0_A Tropomodulin; LRR prote 98.1 1.5E-07 5.2E-12 85.9 -1.8 61 240-300 90-162 (185)
155 1io0_A Tropomodulin; LRR prote 98.0 9.8E-07 3.4E-11 80.4 -0.1 15 140-154 61-75 (185)
156 4h09_A Hypothetical leucine ri 97.8 0.0015 5.3E-08 66.0 21.3 148 140-298 190-342 (379)
157 3e4g_A ATP synthase subunit S, 97.8 6E-06 2E-10 73.9 2.1 83 216-303 62-153 (176)
158 3rw6_A Nuclear RNA export fact 97.7 1.6E-05 5.3E-10 76.5 4.0 61 143-205 169-233 (267)
159 3e4g_A ATP synthase subunit S, 97.7 1.2E-05 4.2E-10 71.8 2.8 69 105-181 53-127 (176)
160 3rw6_A Nuclear RNA export fact 97.7 6.6E-06 2.2E-10 79.1 0.7 63 213-279 168-233 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.4 0.00043 1.5E-08 63.0 -0.6 60 240-299 95-167 (197)
162 3rfe_A Platelet glycoprotein I 96.3 0.0071 2.4E-07 51.1 6.6 54 246-301 11-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.2 0.0023 7.7E-08 58.2 -1.2 88 212-300 38-137 (197)
164 3rfe_A Platelet glycoprotein I 94.0 0.075 2.6E-06 44.7 5.7 51 94-154 12-65 (130)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.5e-28 Score=243.16 Aligned_cols=252 Identities=19% Similarity=0.212 Sum_probs=207.0
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEec-CCCCCCcceeeecCCcccccccceEEEECCCCCC-CCCCCC-C
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYN-SISGENRCKVHHVRSMESLFNEQRYFHWDGYPLK-TLPSKI-S 110 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~-n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~ 110 (543)
..|+.+.|....+......+.+|.++++|++|++++ |. ....+|..+..++ +|++|++++|.++ .+|..+ .
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhC
Confidence 678888888777742112356889999999999985 65 5567788888886 8999999999986 777766 7
Q ss_pred CCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCC-CCCEEeccCCCCCCcCCcccC
Q 041975 111 PEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLK-SLESLYLSGCLKLEKLPEEIG 189 (543)
Q Consensus 111 l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~~~~~p~~l~ 189 (543)
+++|++|+|++|.++ ..+|..++.+++|++|+|++|...+.+|..+.+++ +|++|++++|.+.+.+|..++
T Consensus 124 l~~L~~L~Ls~N~l~--------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 124 IKTLVTLDFSYNALS--------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CTTCCEEECCSSEEE--------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCCCCEEeCCCCccC--------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 899999999999886 57888899999999999999876668888888887 899999999888888888888
Q ss_pred CCCCCceeeccCcccc-ccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCc-CCccCCCCCC
Q 041975 190 NLGSLKNMVANEIAIS-QVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIE-LPESLGQLPS 267 (543)
Q Consensus 190 ~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~ 267 (543)
.+. |+.|++++|.++ ..|..+..+++|+.|++++|.+... +|.+..+++|++|++++|++++ +|..+..+++
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-----GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-----cCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 887 999999999888 5566788889999999999887653 5557778889999999998884 8888888899
Q ss_pred CCeEecCCCCCc-cCCccccCCCCCCEEecccccccccCC
Q 041975 268 LKYLNLEENNFE-KIPSNIKQVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 268 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp 306 (543)
|++|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999999999888 67754 788888899999888665544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=8e-27 Score=262.11 Aligned_cols=234 Identities=21% Similarity=0.197 Sum_probs=127.5
Q ss_pred CCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCC-CCCCCC-CCCCeeEEEcCCCCccccccccccccc
Q 041975 59 MHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLK-TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEEL 136 (543)
Q Consensus 59 l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~l 136 (543)
+++|+.|++++|. ....+|..+..++ +|++|++++|.++ .+|..+ .+++|++|++++|++. ..+
T Consensus 393 ~~~L~~L~L~~n~-----l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~--------~~~ 458 (768)
T 3rgz_A 393 KNTLQELYLQNNG-----FTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE--------GEI 458 (768)
T ss_dssp TCCCCEEECCSSE-----EEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC--------SCC
T ss_pred cCCccEEECCCCc-----cccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc--------CcC
Confidence 4555555555554 3444555555554 5555555555553 444444 4555555555555554 345
Q ss_pred CccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCcccc-ccCCCCCCCC
Q 041975 137 PSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAIS-QVPSSISCLN 215 (543)
Q Consensus 137 p~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~ 215 (543)
|..++.+++|++|++++|...+.+|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..++
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 555555555555555555444455555555555555555555555555555555555555555555555 4555555555
Q ss_pred CCcEEEccCcCCCCCCCC--------------------------------------------------------------
Q 041975 216 RVELLSFAGCKGRPPQMG-------------------------------------------------------------- 233 (543)
Q Consensus 216 ~L~~L~L~~~~~~~~~~~-------------------------------------------------------------- 233 (543)
+|+.|++++|.+.+..+.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 555555555544321110
Q ss_pred ---CCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCc-cCCccccCCCCCCEEecccccccccCC
Q 041975 234 ---LKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFE-KIPSNIKQVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 234 ---~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp 306 (543)
..+|. +..+++|+.|++++|++++ +|..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+..+.+|
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 00111 3334556666666666654 6666666666666666666665 556666666666666666665555555
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-26 Score=233.88 Aligned_cols=220 Identities=24% Similarity=0.325 Sum_probs=174.5
Q ss_pred CCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCccccccccccccc
Q 041975 58 KMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEEL 136 (543)
Q Consensus 58 ~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~l 136 (543)
...+++.|++++|. . ..+|..+..++ +|++|++++|.++.+|..+ .+++|++|+|++|++ ..+
T Consensus 79 ~~~~l~~L~L~~n~-----l-~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l---------~~l 142 (328)
T 4fcg_A 79 TQPGRVALELRSVP-----L-PQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL---------RAL 142 (328)
T ss_dssp TSTTCCEEEEESSC-----C-SSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC---------CCC
T ss_pred cccceeEEEccCCC-----c-hhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCcc---------ccC
Confidence 45788889998886 2 36777788876 8999999988888888877 788899999988887 467
Q ss_pred CccccCCcCCcEEeccccccCeecCCcccC---------CCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCcccccc
Q 041975 137 PSSIGNLSRLVTLDLRKCLRLKKVSSSLCN---------LKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQV 207 (543)
Q Consensus 137 p~~l~~l~~L~~L~L~~~~~l~~lp~~i~~---------l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~l 207 (543)
|..++.+++|++|+|++|...+.+|..+.. +++|++|++++|.+. .+|..++++++|++|++++|.++.+
T Consensus 143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC
Confidence 888888888999999888888888876654 788888888887655 7777788888888888888888888
Q ss_pred CCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCc-cCCcc
Q 041975 208 PSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFE-KIPSN 284 (543)
Q Consensus 208 p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~ 284 (543)
|..+..+++|+.|++++|..... +|. +..+++|+.|++++|++.+ +|..++.+++|++|+|++|++. .+|..
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~-----~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRN-----YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCB-----CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred chhhccCCCCCEEECcCCcchhh-----hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 87788888888888888777664 555 7777888888888876665 7777888888888888887655 77888
Q ss_pred ccCCCCCCEEecccc
Q 041975 285 IKQVSKLSLLILDNW 299 (543)
Q Consensus 285 l~~l~~L~~L~L~~~ 299 (543)
++++++|+.+++..+
T Consensus 297 l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 297 IAQLPANCIILVPPH 311 (328)
T ss_dssp GGGSCTTCEEECCGG
T ss_pred HhhccCceEEeCCHH
Confidence 888888888877765
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=235.81 Aligned_cols=248 Identities=20% Similarity=0.269 Sum_probs=189.6
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l 111 (543)
..++.+.|..+.+. .+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+|.. + ++
T Consensus 32 ~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 32 TETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENI-----VSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp TTCSEEECCSSCCC--EECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCcEEECCCCccc--eECHhHccCCCCCCEEECCCCc-----cCEeChhhhhCCc-cCCEEECCCCcCCccCcccccCC
Confidence 35666666555554 5667899999999999999997 5666688899997 999999999999999875 4 89
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNL 191 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l 191 (543)
++|++|+|++|+++ ...|..+..+++|++|+|++|......|..+.++++|++|++++|.+.+..+..+..+
T Consensus 104 ~~L~~L~Ls~n~i~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 104 SNLTKLDISENKIV--------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp TTCCEEECTTSCCC--------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CCCCEEECCCCccc--------cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 99999999999997 4557788999999999999996666667789999999999999988766555668899
Q ss_pred CCCceeeccCccccccCC-CCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCC-ccCCCCCCC
Q 041975 192 GSLKNMVANEIAISQVPS-SISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELP-ESLGQLPSL 268 (543)
Q Consensus 192 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L 268 (543)
++|+.|++++|.+..++. .+..+++|+.|++++|..... +|. .....+|+.|++++|+++++| ..+..+++|
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-----MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE-----ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc-----cCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 999999999999986654 678888888888888776543 333 333346666666666666655 345666666
Q ss_pred CeEecCCCCCccCC-ccccCCCCCCEEeccccccc
Q 041975 269 KYLNLEENNFEKIP-SNIKQVSKLSLLILDNWKRF 302 (543)
Q Consensus 269 ~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l 302 (543)
+.|+|++|.++.++ ..+..+++|+.|++++|+..
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 66666666666444 33556666666666666443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=4.3e-26 Score=256.16 Aligned_cols=237 Identities=20% Similarity=0.240 Sum_probs=170.0
Q ss_pred ChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCC-CCCCCC-CCCCeeEEEcCCCCcccccc
Q 041975 52 HPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLK-TLPSKI-SPEHLVSLEMPNSNIEQLWN 129 (543)
Q Consensus 52 ~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~l~~l~~ 129 (543)
.+..|.++++|+.|++++|. .....|..+..++ +|++|++++|.+. .+|..+ .+++|++|++++|+++
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~-----l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~---- 479 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNY-----LSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT---- 479 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSE-----EESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC----
T ss_pred cCHHHhcCCCCCEEECcCCc-----ccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc----
Confidence 45667777777777777775 4455666777775 7777777777775 556655 6777777777777775
Q ss_pred cccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCcccc-ccC
Q 041975 130 DVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAIS-QVP 208 (543)
Q Consensus 130 ~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~-~lp 208 (543)
..+|..++.+++|++|+|++|...+.+|..++++++|++|++++|.+.+.+|..++.+++|+.|++++|.+. .+|
T Consensus 480 ----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 480 ----GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp ----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred ----CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 566777777777777777777666677777777777777777777777777777777777777777777654 333
Q ss_pred C----------------------------------------------------------------------CCCCCCCCc
Q 041975 209 S----------------------------------------------------------------------SISCLNRVE 218 (543)
Q Consensus 209 ~----------------------------------------------------------------------~i~~l~~L~ 218 (543)
. .+..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 2 233456677
Q ss_pred EEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCc-cCCccccCCCCCCEEe
Q 041975 219 LLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFE-KIPSNIKQVSKLSLLI 295 (543)
Q Consensus 219 ~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 295 (543)
.|++++|.+.+. +|. ++.+++|+.|+|++|++++ +|..++.+++|+.|+|++|+++ .+|..+..+++|++|+
T Consensus 636 ~LdLs~N~l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 636 FLDMSYNMLSGY-----IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp EEECCSSCCBSC-----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred EEECcCCccccc-----CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 777777776654 665 7777777777777777775 7777777777777777777777 6777777777777777
Q ss_pred cccccccccCCC
Q 041975 296 LDNWKRFLSLPE 307 (543)
Q Consensus 296 L~~~~~l~~lp~ 307 (543)
+++|+..+.+|+
T Consensus 711 ls~N~l~g~iP~ 722 (768)
T 3rgz_A 711 LSNNNLSGPIPE 722 (768)
T ss_dssp CCSSEEEEECCS
T ss_pred CcCCcccccCCC
Confidence 777777777764
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.4e-26 Score=232.38 Aligned_cols=243 Identities=15% Similarity=0.210 Sum_probs=214.8
Q ss_pred CCccEEEEecCCCCCCccee--eecCCcccccccceEEEECC-CCCC-CCCCCC-CCCCeeEEEcCCCCccccccccccc
Q 041975 60 HRLRFFKFYNSISGENRCKV--HHVRSMESLFNEQRYFHWDG-YPLK-TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLE 134 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~--~~~~~l~~l~~~Lr~L~l~~-~~l~-~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~ 134 (543)
.+++.|++++|. ... .+|..+..++ +|++|++++ |.+. .+|..+ .+++|++|+|++|+++ .
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--------~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--------G 115 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE--------E
T ss_pred ceEEEEECCCCC-----ccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC--------C
Confidence 579999999987 445 7888999997 999999995 7774 788877 8999999999999997 6
Q ss_pred ccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCC-CCceeeccCcccc-ccCCCCC
Q 041975 135 ELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLG-SLKNMVANEIAIS-QVPSSIS 212 (543)
Q Consensus 135 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~-~L~~L~l~~~~i~-~lp~~i~ 212 (543)
.+|..++.+++|++|+|++|...+.+|..+.++++|++|++++|.+.+.+|..++.+. +|++|++++|.++ .+|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 8899999999999999999977778999999999999999999998889999999998 9999999999998 7888888
Q ss_pred CCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCc-cCCccccCCCC
Q 041975 213 CLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFE-KIPSNIKQVSK 290 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 290 (543)
.++ |+.|++++|.+... .|. +..+++|+.|++++|.++..+..+..+++|++|+|++|.++ .+|..+..+++
T Consensus 196 ~l~-L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGD-----ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp GCC-CSEEECCSSEEEEC-----CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred CCc-ccEEECcCCcccCc-----CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 887 99999999987753 455 88999999999999999986666899999999999999999 89999999999
Q ss_pred CCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcc
Q 041975 291 LSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLST 330 (543)
Q Consensus 291 L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~ 330 (543)
|+.|++++|+....+|.. ..+++|+.+....+
T Consensus 270 L~~L~Ls~N~l~~~ip~~--------~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG--------GNLQRFDVSAYANN 301 (313)
T ss_dssp CCEEECCSSEEEEECCCS--------TTGGGSCGGGTCSS
T ss_pred CCEEECcCCcccccCCCC--------ccccccChHHhcCC
Confidence 999999999887788753 34667777766555
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.3e-26 Score=230.25 Aligned_cols=218 Identities=23% Similarity=0.362 Sum_probs=195.3
Q ss_pred ccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCC
Q 041975 90 NEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLK 168 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 168 (543)
.+++.|++++|.++.+|..+ .+++|++|+|++|.+ ..+|..++.+++|++|+|++|. +..+|..+.+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l---------~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL---------MELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC---------CCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc---------cchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 48999999999999999977 899999999999998 4788899999999999999984 558999999999
Q ss_pred CCCEEeccCCCCCCcCCcccCC---------CCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-
Q 041975 169 SLESLYLSGCLKLEKLPEEIGN---------LGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI- 238 (543)
Q Consensus 169 ~L~~L~Ls~~~~~~~~p~~l~~---------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~- 238 (543)
+|++|++++|+..+.+|..++. +++|++|++++|.++.+|..+.++++|+.|++++|.+.. +|.
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~------l~~~ 224 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA------LGPA 224 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC------CCGG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc------Cchh
Confidence 9999999999999999988765 999999999999999999999999999999999999876 555
Q ss_pred cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCc-cCCccccCCCCCCEEecccccccccCCCCCCCcEEee
Q 041975 239 LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFE-KIPSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYA 316 (543)
Q Consensus 239 ~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~ 316 (543)
+..+++|++|++++|++.+ +|..++.+++|++|+|++|++. .+|..+..+++|+.|+|++|+.++.+|+- +
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-------l 297 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-------I 297 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-------G
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-------H
Confidence 8899999999999998877 9999999999999999998766 89989999999999999999998888742 3
Q ss_pred cCCCCCccccCCcc
Q 041975 317 RHCTSLETLSNLST 330 (543)
Q Consensus 317 ~~c~~L~~l~~~~~ 330 (543)
.++++|+.+....+
T Consensus 298 ~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 298 AQLPANCIILVPPH 311 (328)
T ss_dssp GGSCTTCEEECCGG
T ss_pred hhccCceEEeCCHH
Confidence 45666666655444
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3e-25 Score=234.03 Aligned_cols=248 Identities=18% Similarity=0.166 Sum_probs=165.9
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeee-cCCcccccccceEEEECCCCCCCC-CCCC-C
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHH-VRSMESLFNEQRYFHWDGYPLKTL-PSKI-S 110 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~ 110 (543)
..++.+.|..+.+. .+.+.+|.++++|++|++++|. ....+ +..+..++ +|++|++++|.+..+ |..+ +
T Consensus 30 ~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNSIA--ELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLS-SLIILKLDYNQFLQLETGAFNG 101 (455)
T ss_dssp TTCCEEECCSSCCC--EECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCT-TCCEEECTTCTTCEECTTTTTT
T ss_pred CccCEEEecCCccC--cCChhHhccCccccEEECcCCc-----ccceECcccccccc-cCCEEeCCCCccCccChhhccC
Confidence 56777776666554 5567889999999999999986 43334 56688886 999999999999776 5556 7
Q ss_pred CCCeeEEEcCCCCcccccccccccccCcc--ccCCcCCcEEeccccccCeecCCc-ccCCCCCCEEeccCCCCCCcCCcc
Q 041975 111 PEHLVSLEMPNSNIEQLWNDVQLEELPSS--IGNLSRLVTLDLRKCLRLKKVSSS-LCNLKSLESLYLSGCLKLEKLPEE 187 (543)
Q Consensus 111 l~~L~~L~L~~n~l~~l~~~~~l~~lp~~--l~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~Ls~~~~~~~~p~~ 187 (543)
+++|++|+|++|+++ ..+|.. ++.+++|++|+|++|......|.. +.++++|++|++++|.+.+..|..
T Consensus 102 l~~L~~L~L~~n~l~--------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 102 LANLEVLTLTQCNLD--------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp CTTCCEEECTTSCCB--------THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cccCCEEeCCCCCCC--------ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 999999999999986 334444 888999999999998655555665 788899999999998877766655
Q ss_pred cCCC----------------------------------CCCceeeccCccccc-cCCC----------------------
Q 041975 188 IGNL----------------------------------GSLKNMVANEIAISQ-VPSS---------------------- 210 (543)
Q Consensus 188 l~~l----------------------------------~~L~~L~l~~~~i~~-lp~~---------------------- 210 (543)
+..+ ++|++|++++|.+.. .|..
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 5443 456666666664431 0000
Q ss_pred ---------------CC--CCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeE
Q 041975 211 ---------------IS--CLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKYL 271 (543)
Q Consensus 211 ---------------i~--~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L 271 (543)
+. ..++|+.|++++|.+... .|. +..+++|++|++++|++++ .|..+..+++|++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-----LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccchhhhccCcccccccccccCceEEEecCcccccc-----chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 00 113455555555554432 233 5556666666666666666 34456666666666
Q ss_pred ecCCCCCccC-CccccCCCCCCEEeccccccc
Q 041975 272 NLEENNFEKI-PSNIKQVSKLSLLILDNWKRF 302 (543)
Q Consensus 272 ~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l 302 (543)
+|++|.++.+ |..+..+++|+.|++++|+..
T Consensus 329 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp ECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 6666666644 344566666666666666543
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=7e-25 Score=235.37 Aligned_cols=267 Identities=15% Similarity=0.144 Sum_probs=193.7
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEH 113 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~ 113 (543)
..++.+.+..+.+. .+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+|.. .+++
T Consensus 21 ~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNR-----IQYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSC-----CCEEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCC
T ss_pred ccccEEECCCCccc--ccChhhccccccccEEecCCCc-----cCCcChHHhhccc-CCCEEecCCCceeecCcc-ccCC
Confidence 56777766666554 5677899999999999999997 6666788899997 999999999999999988 8999
Q ss_pred eeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCC--CEEeccCCCC--CCcCCcccC
Q 041975 114 LVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSL--ESLYLSGCLK--LEKLPEEIG 189 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~~~~--~~~~p~~l~ 189 (543)
|++|+|++|+++. ..+|..++++++|++|++++|.... ..+..+++| ++|++++|.+ .+..|..++
T Consensus 92 L~~L~L~~N~l~~-------~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 92 LKHLDLSFNAFDA-------LPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp CSEEECCSSCCSS-------CCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred ccEEeccCCcccc-------ccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccc
Confidence 9999999999962 2568899999999999999985433 235667777 8888888877 455555544
Q ss_pred CCC-----------------------------------------------------------------------------
Q 041975 190 NLG----------------------------------------------------------------------------- 192 (543)
Q Consensus 190 ~l~----------------------------------------------------------------------------- 192 (543)
.+.
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 422
Q ss_pred ------CCceeeccCcccc-ccCCCC-----CCCCCCcEEEccCcCCCCCCC-----------------CCC---CCccc
Q 041975 193 ------SLKNMVANEIAIS-QVPSSI-----SCLNRVELLSFAGCKGRPPQM-----------------GLK---LPILF 240 (543)
Q Consensus 193 ------~L~~L~l~~~~i~-~lp~~i-----~~l~~L~~L~L~~~~~~~~~~-----------------~~~---lp~~~ 240 (543)
+|++|++++|.+. .+|..+ ..+++|+.+++++|.+..+.. ... ++...
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 5666677777666 677766 666666666666665410000 000 11015
Q ss_pred cCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCcc---CCccccCCCCCCEEecccccccccCCC-----CCCC
Q 041975 241 QSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFEK---IPSNIKQVSKLSLLILDNWKRFLSLPE-----LPCG 311 (543)
Q Consensus 241 ~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~~~~l~~lp~-----lp~~ 311 (543)
.+++|++|++++|++++ +|..++.+++|++|++++|+++. +|..+..+++|+.|++++|+....+|. ++..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 67788888888888887 77788888888888888888874 445677888888888888876553542 2222
Q ss_pred cEEeecCC
Q 041975 312 SSVYARHC 319 (543)
Q Consensus 312 ~~l~~~~c 319 (543)
..|++.+|
T Consensus 402 ~~L~Ls~N 409 (520)
T 2z7x_B 402 LSLNMSSN 409 (520)
T ss_dssp CEEECCSS
T ss_pred CEEECcCC
Confidence 25555555
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.9e-25 Score=245.45 Aligned_cols=252 Identities=14% Similarity=0.173 Sum_probs=190.6
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCC-------C---------------------------------
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSIS-------G--------------------------------- 73 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~-------~--------------------------------- 73 (543)
.+|+++.|...++ ...++ .+|+++++|++|++++|.. +
T Consensus 81 ~~V~~L~L~~~~l-~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGA-SGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCC-EEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCccc-CCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhH
Confidence 5888888887777 34554 6899999999999998842 0
Q ss_pred ---------------------------------CCcceeeecCCcccccccceEEEECCCCCCC----------------
Q 041975 74 ---------------------------------ENRCKVHHVRSMESLFNEQRYFHWDGYPLKT---------------- 104 (543)
Q Consensus 74 ---------------------------------~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~---------------- 104 (543)
.+.... +|..+..++ +|++|++++|.++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhccc-CCCEEECcCCccccccccccccccccchhc
Confidence 011223 788888886 99999999999987
Q ss_pred --CCCCCC---CCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccc-cCe-ecCCcccCC------CCCC
Q 041975 105 --LPSKIS---PEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCL-RLK-KVSSSLCNL------KSLE 171 (543)
Q Consensus 105 --lp~~~~---l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~-~l~-~lp~~i~~l------~~L~ 171 (543)
+|..+. +++|++|+|++|++. ..+|..++++++|++|++++|. ..+ .+|..++++ ++|+
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNL--------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTC--------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCC--------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 898764 899999999999987 6788888999999999999886 444 677777665 8888
Q ss_pred EEeccCCCCCCcCCc--ccCCCCCCceeeccCcccc-ccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCC-CC
Q 041975 172 SLYLSGCLKLEKLPE--EIGNLGSLKNMVANEIAIS-QVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQI-LE 246 (543)
Q Consensus 172 ~L~Ls~~~~~~~~p~--~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~-L~ 246 (543)
+|++++|.+. .+|. .++++++|++|++++|.++ .+| .+..+++|+.|++++|.+.. +|. +..+++ |+
T Consensus 309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~------lp~~l~~l~~~L~ 380 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE------IPANFCGFTEQVE 380 (636)
T ss_dssp EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE------CCTTSEEECTTCC
T ss_pred EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc------ccHhhhhhcccCc
Confidence 8888887766 7777 7888888888888888887 777 77777788888888777653 555 666777 77
Q ss_pred eEeccCCCCCcCCccCCCCC--CCCeEecCCCCCc-cCCcccc-------CCCCCCEEecccccccccCC
Q 041975 247 NLSLINCNIIELPESLGQLP--SLKYLNLEENNFE-KIPSNIK-------QVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 247 ~L~Ls~n~l~~lp~~l~~l~--~L~~L~Ls~n~l~-~lp~~l~-------~l~~L~~L~L~~~~~l~~lp 306 (543)
.|++++|.++.+|..+..++ +|+.|++++|.+. .+|..+. .+++|+.|++++|... .+|
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp 449 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFP 449 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCC
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCC
Confidence 77777777777777666544 6777777777776 4555555 5667777777776433 444
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-24 Score=224.92 Aligned_cols=258 Identities=13% Similarity=0.151 Sum_probs=193.7
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l 111 (543)
..++.+.+..+.+ ..+++..|.++++|++|++++|. .....+..+..++ +|++|++++|.++.++.. + .+
T Consensus 45 ~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 45 NNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCceEEEecCCch--hhCChhHhcccccCcEEECCCCc-----ccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCC
Confidence 4556666655544 35777889999999999999986 4555556788886 999999999999888765 4 89
Q ss_pred CCeeEEEcCCCCcccccccccccccCcc-ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSS-IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
++|++|++++|+++ .+|.. ++.+++|++|++++|......|..+.++++|++|++++|.+.+. + ++.
T Consensus 117 ~~L~~L~L~~n~l~---------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~ 184 (390)
T 3o6n_A 117 PLLTVLVLERNDLS---------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSL 184 (390)
T ss_dssp TTCCEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGG
T ss_pred CCCCEEECCCCccC---------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--ccc
Confidence 99999999999985 56654 58899999999999865555566788999999999999876543 2 333
Q ss_pred CCCC-------------------ceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEecc
Q 041975 191 LGSL-------------------KNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLI 251 (543)
Q Consensus 191 l~~L-------------------~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls 251 (543)
+++| +.|++++|.+..+|.. ..++|+.|++++|.+.. .+.+..+++|++|+++
T Consensus 185 l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD------TAWLLNYPGLVEVDLS 256 (390)
T ss_dssp CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCC------CGGGGGCTTCSEEECC
T ss_pred ccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcc------cHHHcCCCCccEEECC
Confidence 4444 4455555555544432 24678888888888765 4568888899999999
Q ss_pred CCCCCc-CCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCC----CCCCcEEeecCCC
Q 041975 252 NCNIIE-LPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPE----LPCGSSVYARHCT 320 (543)
Q Consensus 252 ~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----lp~~~~l~~~~c~ 320 (543)
+|.+++ .|..+..+++|++|+|++|+++.+|..+..+++|+.|++++|+. ..+|. ++....|++.++.
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC
T ss_pred CCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCc
Confidence 999888 57788889999999999999998887778889999999999854 34442 2333356665543
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-24 Score=236.14 Aligned_cols=250 Identities=13% Similarity=0.138 Sum_probs=188.6
Q ss_pred cCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CCCCeeEEEcC
Q 041975 43 MSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMP 120 (543)
Q Consensus 43 ~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~ 120 (543)
+++.....+++..|.++++|++|++++|. .....+..+..++ +|++|++++|.++.+|+. + .+++|++|+|+
T Consensus 58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 58 FKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp ESSCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eeCCCCCCcCHHHHccCCCCcEEECCCCC-----CCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 33343446778889999999999999987 5555566888886 999999999999888765 4 79999999999
Q ss_pred CCCcccccccccccccCcc-ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCcee--
Q 041975 121 NSNIEQLWNDVQLEELPSS-IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNM-- 197 (543)
Q Consensus 121 ~n~l~~l~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L-- 197 (543)
+|.++ .+|.. ++.+++|++|+|++|...+..|..+.++++|++|++++|.+.+. + ++.+++|+.|
T Consensus 132 ~n~l~---------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l 199 (597)
T 3oja_B 132 RNDLS---------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANV 199 (597)
T ss_dssp SSCCC---------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEEC
T ss_pred CCCCC---------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhc
Confidence 99985 55654 58999999999999966666667789999999999999876543 2 3334444444
Q ss_pred -----------------eccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCc-CC
Q 041975 198 -----------------VANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIE-LP 259 (543)
Q Consensus 198 -----------------~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~-lp 259 (543)
++++|.+..++..+ .++|+.|++++|.+.. .+.+..+++|+.|+|++|.+++ .|
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~------~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred ccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC------ChhhccCCCCCEEECCCCccCCCCH
Confidence 44444444443322 2578888888887665 4557888889999999998888 57
Q ss_pred ccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCC----CCCCcEEeecCC
Q 041975 260 ESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPE----LPCGSSVYARHC 319 (543)
Q Consensus 260 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----lp~~~~l~~~~c 319 (543)
..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|... .+|. ++....|++.++
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 7888889999999999988888877788889999999988643 4442 233335555554
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=3.8e-24 Score=231.99 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=107.0
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEH 113 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~ 113 (543)
..++.+.+..+.+. .+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+|.. .+++
T Consensus 52 ~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNR-----IRSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMAS 122 (562)
T ss_dssp TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCC-----CCEECTTTTTTCT-TCCEEECTTSCCCEECSC-CCTT
T ss_pred CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCC-----CCcCCHHHhCCCC-CCCEEECCCCcCCccCcc-cccc
Confidence 56677666665554 6677899999999999999997 5566678888887 999999999999999988 8999
Q ss_pred eeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCC--CEEeccCCCC--CCcCCcccC
Q 041975 114 LVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSL--ESLYLSGCLK--LEKLPEEIG 189 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~~~~--~~~~p~~l~ 189 (543)
|++|++++|+++.+ .+|..++++++|++|++++|.... ..+..+++| ++|++++|.+ .+..|..+.
T Consensus 123 L~~L~Ls~N~l~~l-------~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 123 LRHLDLSFNDFDVL-------PVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp CSEEECCSSCCSBC-------CCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred CCEEECCCCCcccc-------CchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCccccc
Confidence 99999999999631 346789999999999999985433 234555555 8888888776 455554444
Q ss_pred C
Q 041975 190 N 190 (543)
Q Consensus 190 ~ 190 (543)
.
T Consensus 193 ~ 193 (562)
T 3a79_B 193 I 193 (562)
T ss_dssp E
T ss_pred c
Confidence 3
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.7e-24 Score=228.19 Aligned_cols=283 Identities=18% Similarity=0.170 Sum_probs=218.1
Q ss_pred ccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCC-CCCC--
Q 041975 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKT-LPSK-- 108 (543)
Q Consensus 32 ~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-lp~~-- 108 (543)
+...++.+.+..+.+ ...+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++. +|..
T Consensus 52 ~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 124 (455)
T 3v47_A 52 RLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQ-----FLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNF 124 (455)
T ss_dssp SCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCT-----TCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSST
T ss_pred cCccccEEECcCCcc-cceECcccccccccCCEEeCCCCc-----cCccChhhccCcc-cCCEEeCCCCCCCccccCccc
Confidence 345677776666555 235667889999999999999987 5666688888886 99999999999875 3332
Q ss_pred C-CCCCeeEEEcCCCCcccccccccccccCcc-ccCCcCCcEEeccccccCeecCCcccC--------------------
Q 041975 109 I-SPEHLVSLEMPNSNIEQLWNDVQLEELPSS-IGNLSRLVTLDLRKCLRLKKVSSSLCN-------------------- 166 (543)
Q Consensus 109 ~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~i~~-------------------- 166 (543)
+ .+++|++|+|++|+++ ...|.. ++.+++|++|++++|......|..+..
T Consensus 125 ~~~l~~L~~L~L~~n~l~--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIK--------KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp TTTCTTCCEEECCSSBCC--------SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred ccCcccCCEEECCCCccC--------ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccc
Confidence 4 7899999999999986 334554 788999999999998665555554433
Q ss_pred --------------CCCCCEEeccCCCCCCcCCcccC---------------------------------------CCCC
Q 041975 167 --------------LKSLESLYLSGCLKLEKLPEEIG---------------------------------------NLGS 193 (543)
Q Consensus 167 --------------l~~L~~L~Ls~~~~~~~~p~~l~---------------------------------------~l~~ 193 (543)
+++|++|++++|.+.+..|..+. ..++
T Consensus 197 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred hhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 36788888888876543332221 1258
Q ss_pred CceeeccCcccccc-CCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCe
Q 041975 194 LKNMVANEIAISQV-PSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKY 270 (543)
Q Consensus 194 L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~ 270 (543)
|+.|++++|.+..+ |..+..+++|+.|++++|.+... .|. +..+++|+.|++++|.+++ .|..++.+++|++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-----DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCccccc-----ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 99999999999854 67789999999999999998763 343 8889999999999999998 4678899999999
Q ss_pred EecCCCCCccC-CccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcccccCCcceeeecccCCCCh
Q 041975 271 LNLEENNFEKI-PSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTLFKPLCQKFDFCNCFKLNR 349 (543)
Q Consensus 271 L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~~~~~~~~~~~~~c~~L~~ 349 (543)
|+|++|+++.+ |..+..+++|++|++++|+. +.+|. .. +.++++|+.+....+.+.+ .|+.+.+
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~---~~---~~~l~~L~~L~l~~N~l~~--------~~~~~~~ 416 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPD---GI---FDRLTSLQKIWLHTNPWDC--------SCPRIDY 416 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCT---TT---TTTCTTCCEEECCSSCBCC--------CTTTTHH
T ss_pred EECCCCcccccChhhccccccccEEECCCCcc-ccCCH---hH---hccCCcccEEEccCCCccc--------CCCcchH
Confidence 99999999966 67899999999999999964 34442 11 2568899999888775554 5666554
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=9.6e-25 Score=245.24 Aligned_cols=254 Identities=12% Similarity=0.156 Sum_probs=191.2
Q ss_pred cccEEEEEeecCCceeeccChHHHhCCCCccEEEE-ecCCCCCC------------------------------------
Q 041975 33 SEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKF-YNSISGEN------------------------------------ 75 (543)
Q Consensus 33 ~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l-~~n~~~~~------------------------------------ 75 (543)
..+|+++.|...++ ...+ +.+|+++++|++|++ ++|.....
T Consensus 322 ~~~V~~L~Ls~~~L-~G~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 322 NGRVTGLSLAGFGA-KGRV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp TSCEEEEECTTTCC-EEEE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCCEEEEECccCCC-CCcC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 36788888877777 3455 468999999999999 66531000
Q ss_pred -----------------------------------cceeeecCCcccccccceEEEECCCCCCC----------------
Q 041975 76 -----------------------------------RCKVHHVRSMESLFNEQRYFHWDGYPLKT---------------- 104 (543)
Q Consensus 76 -----------------------------------~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~---------------- 104 (543)
.....+|..+..++ +|++|++++|.++.
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCC-CCCEEECcCCcCCCCccccccccccccccc
Confidence 01111777888886 99999999999987
Q ss_pred --CCCCC---CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccc-cCe-ecCCcccCCC-------CC
Q 041975 105 --LPSKI---SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCL-RLK-KVSSSLCNLK-------SL 170 (543)
Q Consensus 105 --lp~~~---~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~-~l~-~lp~~i~~l~-------~L 170 (543)
+|..+ ++++|++|+|++|++. ..+|..++++++|++|+|++|. ..+ .+|..+++++ +|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~--------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNM--------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTC--------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccCChhhhhccCCCCCEEECcCCCCC--------ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 88876 5899999999999876 6888889999999999999886 444 5776555554 89
Q ss_pred CEEeccCCCCCCcCCc--ccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCC-CC
Q 041975 171 ESLYLSGCLKLEKLPE--EIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQI-LE 246 (543)
Q Consensus 171 ~~L~Ls~~~~~~~~p~--~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~-L~ 246 (543)
++|++++|.+. .+|. .++++++|+.|++++|.++.+| .+..+++|+.|++++|.+.. +|. +..+++ |+
T Consensus 551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~------lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEE------IPEDFCAFTDQVE 622 (876)
T ss_dssp CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSC------CCTTSCEECTTCC
T ss_pred cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCcccc------chHHHhhccccCC
Confidence 99999988766 8888 7888899999999998888888 78888889999998888773 665 777787 88
Q ss_pred eEeccCCCCCcCCccCCCCCC--CCeEecCCCCCccCC----cccc--CCCCCCEEecccccccccCC
Q 041975 247 NLSLINCNIIELPESLGQLPS--LKYLNLEENNFEKIP----SNIK--QVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 247 ~L~Ls~n~l~~lp~~l~~l~~--L~~L~Ls~n~l~~lp----~~l~--~l~~L~~L~L~~~~~l~~lp 306 (543)
.|++++|.++.+|..+..++. |+.|+|++|.+...+ ..+. .+++|+.|++++|... .+|
T Consensus 623 ~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp 689 (876)
T 4ecn_A 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFP 689 (876)
T ss_dssp EEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCC
T ss_pred EEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccC
Confidence 888888888888877766543 777777777775322 1222 3346777777776433 444
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.1e-24 Score=239.60 Aligned_cols=286 Identities=14% Similarity=0.167 Sum_probs=218.5
Q ss_pred ccccEEEEEeecCC-ceeeccChHHHhCC------CCccEEEEecCCCCCCcceeeecC--CcccccccceEEEECCCCC
Q 041975 32 GSEAIEGISLDMSK-VKEICMHPSIFTKM------HRLRFFKFYNSISGENRCKVHHVR--SMESLFNEQRYFHWDGYPL 102 (543)
Q Consensus 32 ~~~~v~~i~L~~s~-~~~~~i~~~~f~~l------~~Lr~L~l~~n~~~~~~~~~~~~~--~l~~l~~~Lr~L~l~~~~l 102 (543)
....++.+.+..+. +....+ +..+.++ ++|++|++++|. .. .+|. .+..++ +|++|++++|.+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~-----l~-~ip~~~~l~~l~-~L~~L~L~~N~l 342 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNN-----LK-TFPVETSLQKMK-KLGMLECLYNQL 342 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSC-----CS-SCCCHHHHTTCT-TCCEEECCSCCC
T ss_pred cCCCCCEEECcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCc-----CC-ccCchhhhccCC-CCCEEeCcCCcC
Confidence 34577777776665 421023 4556555 899999999986 44 6787 788886 999999999999
Q ss_pred C-CCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcC-CcEEeccccccCeecCCcccCCC--CCCEEeccC
Q 041975 103 K-TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSR-LVTLDLRKCLRLKKVSSSLCNLK--SLESLYLSG 177 (543)
Q Consensus 103 ~-~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~-L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~Ls~ 177 (543)
+ .+| .+ .+++|++|++++|++ ..+|..++.+++ |++|++++|. +..+|..+..++ +|++|++++
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l---------~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQI---------TEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEE---------EECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred ccchh-hhCCCCCCCEEECCCCcc---------ccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence 7 888 56 788999999999988 477888889998 9999999985 448888776654 899999999
Q ss_pred CCCCCcCCcccC-------CCCCCceeeccCccccccCCCCC-CCCCCcEEEccCcCCCCCCCCCCCCc--cc-------
Q 041975 178 CLKLEKLPEEIG-------NLGSLKNMVANEIAISQVPSSIS-CLNRVELLSFAGCKGRPPQMGLKLPI--LF------- 240 (543)
Q Consensus 178 ~~~~~~~p~~l~-------~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~~~~~~lp~--~~------- 240 (543)
|.+.+..|..++ .+.+|++|++++|.++.+|..+. .+++|+.|++++|.+.. +|. +.
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE------IPKNSLKDENENFK 485 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB------CCSSSSEETTEECT
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC------cCHHHhcccccccc
Confidence 998888888887 78899999999999998887654 58899999999998774 444 22
Q ss_pred cCCCCCeEeccCCCCCcCCccCC--CCCCCCeEecCCCCCccCCccccCCCCCCEEeccc------ccccccCC----CC
Q 041975 241 QSQILENLSLINCNIIELPESLG--QLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDN------WKRFLSLP----EL 308 (543)
Q Consensus 241 ~l~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~------~~~l~~lp----~l 308 (543)
.+++|+.|++++|+++.+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|++++ |+..+.+| .+
T Consensus 486 ~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp TGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred ccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 23389999999999999988887 89999999999999998998888999999999954 44455555 23
Q ss_pred CCCcEEeecCCCCCccccCCcccccCCcceeeecccCC
Q 041975 309 PCGSSVYARHCTSLETLSNLSTLFKPLCQKFDFCNCFK 346 (543)
Q Consensus 309 p~~~~l~~~~c~~L~~l~~~~~~~~~~~~~~~~~~c~~ 346 (543)
+....|++.++.- +.++.. +.+.++.+.+.+++-
T Consensus 566 ~~L~~L~Ls~N~l-~~ip~~---~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 566 PSLTQLQIGSNDI-RKVNEK---ITPNISVLDIKDNPN 599 (636)
T ss_dssp SSCCEEECCSSCC-CBCCSC---CCTTCCEEECCSCTT
T ss_pred CCCCEEECCCCcC-CccCHh---HhCcCCEEECcCCCC
Confidence 3333666666543 555432 124567777777743
No 17
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=7.7e-24 Score=223.30 Aligned_cols=208 Identities=16% Similarity=0.159 Sum_probs=163.1
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEH 113 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~ 113 (543)
..++.+.+..+.+.. + + .|..+++|++|++++|.+ .. ++ +..++ +|++|++++|.++.+| ...+++
T Consensus 42 ~~L~~L~Ls~n~l~~--~-~-~l~~l~~L~~L~Ls~n~l-----~~-~~--~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~ 107 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD--M-T-GIEKLTGLTKLICTSNNI-----TT-LD--LSQNT-NLTYLACDSNKLTNLD-VTPLTK 107 (457)
T ss_dssp TTCCEEECCSSCCCC--C-T-TGGGCTTCSEEECCSSCC-----SC-CC--CTTCT-TCSEEECCSSCCSCCC-CTTCTT
T ss_pred CCCCEEEccCCCccc--C-h-hhcccCCCCEEEccCCcC-----Ce-Ec--cccCC-CCCEEECcCCCCceee-cCCCCc
Confidence 556777666666543 3 2 689999999999999873 22 23 67776 9999999999998886 338999
Q ss_pred eeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCC
Q 041975 114 LVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGS 193 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~ 193 (543)
|++|++++|+++ .+| ++.+++|++|++++|. +..++ ++++++|++|++++|...+.+ .++.+++
T Consensus 108 L~~L~L~~N~l~---------~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 108 LTYLNCDTNKLT---------KLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp CCEEECCSSCCS---------CCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred CCEEECCCCcCC---------eec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCc
Confidence 999999999986 344 7888999999999884 44454 778888999999988777776 3778888
Q ss_pred CceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEec
Q 041975 194 LKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNL 273 (543)
Q Consensus 194 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 273 (543)
|++|++++|.++.+| +..+++|+.|++++|.+.. + .+..+++|+.|++++|+++++| ++.+++|+.|++
T Consensus 172 L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~------~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK------L-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDC 240 (457)
T ss_dssp CCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC------C-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEEC
T ss_pred CCEEECCCCccceec--cccCCCCCEEECcCCcCCe------e-ccccCCCCCEEECcCCcccccC--ccccCCCCEEEe
Confidence 999999988888876 7788888888888888665 3 2667788888888888888876 777888888888
Q ss_pred CCCCCccCC
Q 041975 274 EENNFEKIP 282 (543)
Q Consensus 274 s~n~l~~lp 282 (543)
++|+++.+|
T Consensus 241 ~~N~l~~~~ 249 (457)
T 3bz5_A 241 SVNPLTELD 249 (457)
T ss_dssp CSSCCSCCC
T ss_pred eCCcCCCcC
Confidence 888877665
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.8e-24 Score=227.17 Aligned_cols=273 Identities=18% Similarity=0.168 Sum_probs=222.1
Q ss_pred ccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-
Q 041975 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI- 109 (543)
Q Consensus 32 ~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~- 109 (543)
+...++.+.|..+.+. .+.+.+|.++++|++|++++|. .....+..+..++ +|++|++++|.+..++. .+
T Consensus 54 ~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 54 SFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNR-----LKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp TCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSC-----CCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCCEEECCCCccC--EeChhhhhCCccCCEEECCCCc-----CCccCcccccCCC-CCCEEECCCCccccCChhHcc
Confidence 3456777777666554 5667899999999999999986 3333334567786 99999999999987654 45
Q ss_pred CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCccc
Q 041975 110 SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPEEI 188 (543)
Q Consensus 110 ~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l 188 (543)
.+++|++|++++|.++ ...|..++.+++|++|+|++|. +..+| ..+.++++|+.|++++|.+.+..+..+
T Consensus 126 ~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 196 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLV--------YISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196 (477)
T ss_dssp TCTTCCEEEECCTTCC--------EECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred ccccCCEEECCCCccc--------eeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence 8999999999999997 4456689999999999999984 44455 458899999999999998887777789
Q ss_pred CCCCCCceeeccCcccc-ccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcC-CccCCC
Q 041975 189 GNLGSLKNMVANEIAIS-QVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIEL-PESLGQ 264 (543)
Q Consensus 189 ~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~l-p~~l~~ 264 (543)
..+++|+.|+++++... .+|.......+|+.|++++|.+.. +|. +..+++|+.|+|++|.++.+ +..+..
T Consensus 197 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc------cCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 99999999999997654 777777777899999999998775 664 88999999999999999995 456889
Q ss_pred CCCCCeEecCCCCCccC-CccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcccccC
Q 041975 265 LPSLKYLNLEENNFEKI-PSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTLFKP 334 (543)
Q Consensus 265 l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~~~~ 334 (543)
+++|+.|+|++|+++.+ |..+..+++|+.|++++|.. ..+| .. .+.+|++|+.+....+.+.+
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~---~~---~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLE---ES---VFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCC---GG---GBSCGGGCCEEECCSSCEEC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC-ceeC---Hh---HcCCCcccCEEEccCCCccC
Confidence 99999999999999955 67889999999999999953 3343 21 13567889988887775554
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.3e-23 Score=212.21 Aligned_cols=209 Identities=18% Similarity=0.233 Sum_probs=96.0
Q ss_pred cChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCccccccc
Q 041975 51 MHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWND 130 (543)
Q Consensus 51 i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~ 130 (543)
+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+|..+. ++|++|++++|+++
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~----- 134 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNK-----ISKISPGAFAPLV-KLERLYLSKNQLKELPEKMP-KTLQELRVHENEIT----- 134 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSC-----CCCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCC-----
T ss_pred eChhhhccCCCCCEEECCCCc-----CCeeCHHHhcCCC-CCCEEECCCCcCCccChhhc-ccccEEECCCCccc-----
Confidence 333445555555555555443 2222344444443 55555555555554444332 44555555555543
Q ss_pred ccccccCccccCCcCCcEEeccccccCe--ecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCcccccc-
Q 041975 131 VQLEELPSSIGNLSRLVTLDLRKCLRLK--KVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQV- 207 (543)
Q Consensus 131 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~l- 207 (543)
...+..++.+++|++|++++|.... ..+..+.++++|++|++++|.+. .+|..+. ++|++|++++|.++.+
T Consensus 135 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 135 ---KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVD 208 (330)
T ss_dssp ---BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred ---ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccC
Confidence 1122234445555555555543221 23334444555555555554322 2333322 4455555555555433
Q ss_pred CCCCCCCCCCcEEEccCcCCCCCCCCCCCC-ccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCC
Q 041975 208 PSSISCLNRVELLSFAGCKGRPPQMGLKLP-ILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIP 282 (543)
Q Consensus 208 p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 282 (543)
|..+..+++|+.|++++|.+... .+ .+..+++|++|++++|+++.+|..+..+++|++|++++|+++.+|
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAV-----DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEE-----CTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred HHHhcCCCCCCEEECCCCcCcee-----ChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence 33444555555555555544331 11 144445555555555555555555555555555555555555443
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=7.3e-24 Score=214.20 Aligned_cols=215 Identities=17% Similarity=0.247 Sum_probs=129.6
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCC-CCCC-CCCCeeEEEcCCCCcccccccccccccC
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTL-PSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELP 137 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp 137 (543)
++|+.|++++|. .....+..+..++ +|++|++++|.++.+ |..+ .+++|++|++++|+++ .+|
T Consensus 54 ~~l~~L~l~~n~-----i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------~l~ 118 (332)
T 2ft3_A 54 PDTTLLDLQNND-----ISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV---------EIP 118 (332)
T ss_dssp TTCCEEECCSSC-----CCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC---------SCC
T ss_pred CCCeEEECCCCc-----CCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC---------ccC
Confidence 466666666664 3333344566665 666666666666655 3334 5666666666666663 444
Q ss_pred ccccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCC--CcCCcccCCCCCCceeeccCccccccCCCCCCC
Q 041975 138 SSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKL--EKLPEEIGNLGSLKNMVANEIAISQVPSSISCL 214 (543)
Q Consensus 138 ~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~--~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l 214 (543)
..+. ++|++|++++|.. ..+| ..+.++++|++|++++|.+. +..|..++.+ +|++|++++|.++.+|..+.
T Consensus 119 ~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-- 192 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP-- 192 (332)
T ss_dssp SSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--
T ss_pred cccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--
Confidence 4443 5666666666633 3333 33566666666666666553 2445555555 66666666666666665543
Q ss_pred CCCcEEEccCcCCCCCCCCCCCC-ccccCCCCCeEeccCCCCCcCC-ccCCCCCCCCeEecCCCCCccCCccccCCCCCC
Q 041975 215 NRVELLSFAGCKGRPPQMGLKLP-ILFQSQILENLSLINCNIIELP-ESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLS 292 (543)
Q Consensus 215 ~~L~~L~L~~~~~~~~~~~~~lp-~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 292 (543)
++|+.|++++|.+... .+ .+..+++|+.|++++|++++++ ..+..+++|++|++++|+++.+|..+..+++|+
T Consensus 193 ~~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAI-----ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSCCCCC-----CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred CCCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence 5666666666665542 11 2566666666666666666643 356666666666666666666666666666666
Q ss_pred EEeccccc
Q 041975 293 LLILDNWK 300 (543)
Q Consensus 293 ~L~L~~~~ 300 (543)
.|++++|+
T Consensus 268 ~L~l~~N~ 275 (332)
T 2ft3_A 268 VVYLHTNN 275 (332)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 66666664
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=7.1e-24 Score=228.96 Aligned_cols=265 Identities=17% Similarity=0.200 Sum_probs=178.5
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l 111 (543)
..++.+.+..+.+. .+.+.+|.++++|++|++++|. .....+..+..++ +|++|++++|.++.++.. + .+
T Consensus 26 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSR-----INTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSC-----CCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCCccC--ccChhhhhcCCcccEEECCCCC-----cCccChhhccccc-cCCEEECCCCccCccCHHHhccC
Confidence 46777766666654 4556788999999999999987 5555667788886 899999999999888775 4 78
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
++|++|++++|+++.+ .+|..++++++|++|++++|...+.+| ..+.++++|++|++++|.+.+..|..++.
T Consensus 98 ~~L~~L~Ls~n~l~~~-------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTL-------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp TTCCEEECTTCCCSSS-------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred CCCcEEECCCCccccc-------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 9999999999988632 344556666667777776665455554 34566666666666666555544444433
Q ss_pred ------------------------CCCCceeeccCccccc----------------------------------------
Q 041975 191 ------------------------LGSLKNMVANEIAISQ---------------------------------------- 206 (543)
Q Consensus 191 ------------------------l~~L~~L~l~~~~i~~---------------------------------------- 206 (543)
+++|++|++++|.+..
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 2333444444333322
Q ss_pred --------------------------------------------------------------------------cCCCC-
Q 041975 207 --------------------------------------------------------------------------VPSSI- 211 (543)
Q Consensus 207 --------------------------------------------------------------------------lp~~i- 211 (543)
+|..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 22222
Q ss_pred CCCCCCcEEEccCcCCCCCCCCCCCC---c-cccCCCCCeEeccCCCCCcCC---ccCCCCCCCCeEecCCCCCccCCcc
Q 041975 212 SCLNRVELLSFAGCKGRPPQMGLKLP---I-LFQSQILENLSLINCNIIELP---ESLGQLPSLKYLNLEENNFEKIPSN 284 (543)
Q Consensus 212 ~~l~~L~~L~L~~~~~~~~~~~~~lp---~-~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~l~~lp~~ 284 (543)
..+++|+.|++++|.+... +| . +..+++|+.|++++|++++++ ..++.+++|++|++++|+++.+|..
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 405 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEE-----YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405 (549)
T ss_dssp HHCTTCCEEECCSSCCCHH-----HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC
T ss_pred hcCccccEEEccCCccccc-----cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh
Confidence 2467778888888776542 22 1 566788888888888888754 3477788888888888888888888
Q ss_pred ccCCCCCCEEecccccccccCC-CCCCCc-EEeecCC
Q 041975 285 IKQVSKLSLLILDNWKRFLSLP-ELPCGS-SVYARHC 319 (543)
Q Consensus 285 l~~l~~L~~L~L~~~~~l~~lp-~lp~~~-~l~~~~c 319 (543)
+..+++|++|++++|+ +..+| .+|..+ .|++.+|
T Consensus 406 ~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS
T ss_pred hcccccccEEECCCCC-cccccchhcCCceEEECCCC
Confidence 8888888888888886 34444 233344 6666554
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.8e-23 Score=228.68 Aligned_cols=250 Identities=16% Similarity=0.156 Sum_probs=193.6
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCC-CCCC-CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTL-PSKI-SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l 111 (543)
..++.+.+..+.+. .+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.+..+ |..+ ++
T Consensus 33 ~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 33 NSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQ-----IYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCC-----CCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCcEEEccCCccC--cCChhHhccCccceEEECCCCc-----cceeChhhccCcc-ccCeeeCCCCcccccChhhhccc
Confidence 35666666555554 5667899999999999999997 5666788899997 999999999999776 4456 89
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCee-cCCcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKK-VSSSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
++|++|++++|+++ ..-|..++++++|++|++++|..... .|. +..+++|++|++++|.+.+..|..++.
T Consensus 105 ~~L~~L~L~~n~i~--------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 105 KALKHLFFIQTGIS--------SIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp TTCCEEECTTSCCS--------CGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred ccccEeeccccCcc--------cCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhh
Confidence 99999999999996 22356789999999999999855442 244 556999999999999887777778889
Q ss_pred CCCCc--eeeccCccccccCCCCCCCCCCc--------------------------------------------------
Q 041975 191 LGSLK--NMVANEIAISQVPSSISCLNRVE-------------------------------------------------- 218 (543)
Q Consensus 191 l~~L~--~L~l~~~~i~~lp~~i~~l~~L~-------------------------------------------------- 218 (543)
+++|+ .|++++|.+..++.......+|+
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 99999 88999999887665554444444
Q ss_pred --EEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccC-CccccCCCCCCE
Q 041975 219 --LLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKI-PSNIKQVSKLSL 293 (543)
Q Consensus 219 --~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~ 293 (543)
.|++++|.+.. ++. +..+++|++|++++|+++++|..++.+++|++|++++|.+..+ |..+..+++|+.
T Consensus 256 L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 256 VESINLQKHYFFN------ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEECTTCCCSS------CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred eeEEEeecCccCc------cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 44444444433 333 6778888888888888888888888888888888888888855 457788888888
Q ss_pred EecccccccccCC
Q 041975 294 LILDNWKRFLSLP 306 (543)
Q Consensus 294 L~L~~~~~l~~lp 306 (543)
|++++|.....+|
T Consensus 330 L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 330 LSIKGNTKRLELG 342 (606)
T ss_dssp EECCSCSSCCBCC
T ss_pred EECCCCCcccccc
Confidence 8888886654444
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.4e-23 Score=211.52 Aligned_cols=234 Identities=18% Similarity=0.277 Sum_probs=184.0
Q ss_pred cccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCC
Q 041975 33 SEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPE 112 (543)
Q Consensus 33 ~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~ 112 (543)
...++.+.+..+.+. .+ ..|..+++|++|++++|.+ . .++. +..++ +|++|++++|.++.+|....++
T Consensus 43 l~~L~~L~l~~~~i~--~~--~~~~~~~~L~~L~l~~n~i-----~-~~~~-~~~l~-~L~~L~L~~n~i~~~~~~~~l~ 110 (347)
T 4fmz_A 43 LESITKLVVAGEKVA--SI--QGIEYLTNLEYLNLNGNQI-----T-DISP-LSNLV-KLTNLYIGTNKITDISALQNLT 110 (347)
T ss_dssp HTTCSEEECCSSCCC--CC--TTGGGCTTCCEEECCSSCC-----C-CCGG-GTTCT-TCCEEECCSSCCCCCGGGTTCT
T ss_pred cccccEEEEeCCccc--cc--hhhhhcCCccEEEccCCcc-----c-cchh-hhcCC-cCCEEEccCCcccCchHHcCCC
Confidence 345677777666554 33 2488899999999999863 2 2333 77776 9999999999998887644899
Q ss_pred CeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCC
Q 041975 113 HLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLG 192 (543)
Q Consensus 113 ~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~ 192 (543)
+|++|++++|.++ .++. +..+++|++|++++|.....++. +..+++|++|++++|......+ ++.++
T Consensus 111 ~L~~L~l~~n~i~---------~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~ 177 (347)
T 4fmz_A 111 NLRELYLNEDNIS---------DISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLT 177 (347)
T ss_dssp TCSEEECTTSCCC---------CCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred cCCEEECcCCccc---------Cchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCC
Confidence 9999999999885 4444 78899999999999876666655 7888999999999887554433 78888
Q ss_pred CCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEe
Q 041975 193 SLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLN 272 (543)
Q Consensus 193 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 272 (543)
+|++|++++|.+..++. +..+++|+.|++++|.+.. ++.+..+++|++|++++|.+++++. +..+++|++|+
T Consensus 178 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 249 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD------ITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLE 249 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC------CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred CCCEEEccCCccccccc-ccCCCccceeecccCCCCC------CchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEE
Confidence 99999999998887766 7788888888888887665 4447778888888888888888775 78888888888
Q ss_pred cCCCCCccCCccccCCCCCCEEeccccc
Q 041975 273 LEENNFEKIPSNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 273 Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 300 (543)
+++|.++.++ .+..+++|+.|++++|+
T Consensus 250 l~~n~l~~~~-~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 250 IGTNQISDIN-AVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp CCSSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCCCccCCCh-hHhcCCCcCEEEccCCc
Confidence 8888888775 57788888888888884
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.4e-23 Score=229.47 Aligned_cols=249 Identities=17% Similarity=0.123 Sum_probs=175.0
Q ss_pred cEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-CCC
Q 041975 35 AIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI-SPE 112 (543)
Q Consensus 35 ~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~ 112 (543)
.++.+.+..+.+ ..+.+.+|.++++|+.|++++|. . ..+|..+..++ +|++|++++|.++.++. .+ .++
T Consensus 255 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~-----l-~~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 255 SVESINLQKHYF--FNISSNTFHCFSGLQELDLTATH-----L-SELPSGLVGLS-TLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp EEEEEECTTCCC--SSCCTTTTTTCTTCSEEECTTSC-----C-SCCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ceeEEEeecCcc--CccCHHHhccccCCCEEeccCCc-----c-CCCChhhcccc-cCCEEECccCCcCcCchhhhhccC
Confidence 455554444433 45667778888888888888885 2 25677777776 88888888888876643 44 678
Q ss_pred CeeEEEcCCCCcccccccccccccCc-cccCCcCCcEEeccccccCeec--CCcccCCCCCCEEeccCCCCCCcCCcccC
Q 041975 113 HLVSLEMPNSNIEQLWNDVQLEELPS-SIGNLSRLVTLDLRKCLRLKKV--SSSLCNLKSLESLYLSGCLKLEKLPEEIG 189 (543)
Q Consensus 113 ~L~~L~L~~n~l~~l~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~Ls~~~~~~~~p~~l~ 189 (543)
+|++|++++|.+. ..+|. .++.+++|++|++++|...... |..+.++++|++|++++|.+.+..|..++
T Consensus 326 ~L~~L~l~~n~~~--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 326 SLTHLSIKGNTKR--------LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp TCSEEECCSCSSC--------CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred cCCEEECCCCCcc--------cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 8888888888775 34544 3777788888888877554443 56677778888888888777666677777
Q ss_pred CCCCCceeeccCcccccc-C-CCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc--C--CccC
Q 041975 190 NLGSLKNMVANEIAISQV-P-SSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE--L--PESL 262 (543)
Q Consensus 190 ~l~~L~~L~l~~~~i~~l-p-~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~--l--p~~l 262 (543)
.+++|++|++++|.+... + ..+..+++|+.|++++|.+... .|. +..+++|++|++++|.+++ + +..+
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-----SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-----CTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc-----CHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 788888888888877643 2 3367778888888888776553 333 6677778888888877765 2 2456
Q ss_pred CCCCCCCeEecCCCCCccC-CccccCCCCCCEEecccccccccC
Q 041975 263 GQLPSLKYLNLEENNFEKI-PSNIKQVSKLSLLILDNWKRFLSL 305 (543)
Q Consensus 263 ~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~l 305 (543)
..+++|++|++++|+++.+ |..+..+++|+.|++++|+.....
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence 7777788888888877754 466777778888888877654433
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=8.2e-24 Score=218.68 Aligned_cols=262 Identities=17% Similarity=0.148 Sum_probs=208.3
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC--CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI--SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l 111 (543)
..++.+.+..+.+. .+.+.+|.++++|++|++++|. .....+..+..++ +|++|++++|.++.+|... .+
T Consensus 69 ~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l 140 (390)
T 3o6n_A 69 RQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNA-----IRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNT 140 (390)
T ss_dssp CCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCC-----CCcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCC
Confidence 45667666655553 5667789999999999999997 4555566788886 9999999999999999864 79
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCE-------------------
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLES------------------- 172 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~------------------- 172 (543)
++|++|++++|+++ ...|..++.+++|++|++++|.. ..++ +..+++|++
T Consensus 141 ~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~ 209 (390)
T 3o6n_A 141 PKLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVEE 209 (390)
T ss_dssp TTCCEEECCSSCCC--------BCCTTTTSSCTTCCEEECCSSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCSSCSE
T ss_pred CCCcEEECCCCccC--------ccChhhccCCCCCCEEECCCCcC-Cccc--cccccccceeecccccccccCCCCcceE
Confidence 99999999999996 34456789999999999999843 3333 334445555
Q ss_pred EeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEecc
Q 041975 173 LYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLI 251 (543)
Q Consensus 173 L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls 251 (543)
|++++|.+. .+|. ...++|+.|++++|.++.. ..+..+++|+.|++++|.+... .|. +..+++|+.|+++
T Consensus 210 L~l~~n~l~-~~~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 210 LDASHNSIN-VVRG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI-----MYHPFVKMQRLERLYIS 280 (390)
T ss_dssp EECCSSCCC-EEEC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE-----ESGGGTTCSSCCEEECC
T ss_pred EECCCCeee-eccc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCc-----ChhHccccccCCEEECC
Confidence 455544332 2232 2346899999999999976 4688999999999999987763 344 8899999999999
Q ss_pred CCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCccc
Q 041975 252 NCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTL 331 (543)
Q Consensus 252 ~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~ 331 (543)
+|+++++|..+..+++|++|+|++|+++.+|..+..+++|+.|++++|+. ..++ +..+++|+.+....+.
T Consensus 281 ~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i-~~~~---------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 281 NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLK---------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCC---------CCTTCCCSEEECCSSC
T ss_pred CCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc-ceeC---------chhhccCCEEEcCCCC
Confidence 99999999888999999999999999999999999999999999999964 3332 3568889998887775
Q ss_pred cc
Q 041975 332 FK 333 (543)
Q Consensus 332 ~~ 333 (543)
+.
T Consensus 351 ~~ 352 (390)
T 3o6n_A 351 WD 352 (390)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.2e-23 Score=236.38 Aligned_cols=287 Identities=11% Similarity=0.151 Sum_probs=218.8
Q ss_pred ccccEEEEEeecCC-ceeeccChHHHh-------CCCCccEEEEecCCCCCCcceeeecC--CcccccccceEEEECCCC
Q 041975 32 GSEAIEGISLDMSK-VKEICMHPSIFT-------KMHRLRFFKFYNSISGENRCKVHHVR--SMESLFNEQRYFHWDGYP 101 (543)
Q Consensus 32 ~~~~v~~i~L~~s~-~~~~~i~~~~f~-------~l~~Lr~L~l~~n~~~~~~~~~~~~~--~l~~l~~~Lr~L~l~~~~ 101 (543)
....++.+.|..+. +....+ +..+. .+++|+.|++++|. .. .+|. .+..++ +|+.|++++|.
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N~-----L~-~ip~~~~l~~L~-~L~~L~Ls~N~ 584 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYNN-----LE-EFPASASLQKMV-KLGLLDCVHNK 584 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSSC-----CC-BCCCHHHHTTCT-TCCEEECTTSC
T ss_pred CCCCCCEEECcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCCc-----CC-ccCChhhhhcCC-CCCEEECCCCC
Confidence 34577777777665 421023 34444 44599999999997 44 7787 788887 99999999999
Q ss_pred CCCCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcC-CcEEeccccccCeecCCcccCCCC--CCEEeccC
Q 041975 102 LKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSR-LVTLDLRKCLRLKKVSSSLCNLKS--LESLYLSG 177 (543)
Q Consensus 102 l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~-L~~L~L~~~~~l~~lp~~i~~l~~--L~~L~Ls~ 177 (543)
++.+| .+ .+++|++|+|++|++ ..+|..++.+++ |++|+|++|. +..+|..+..++. |++|++++
T Consensus 585 l~~lp-~~~~L~~L~~L~Ls~N~l---------~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 585 VRHLE-AFGTNVKLTDLKLDYNQI---------EEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp CCBCC-CCCTTSEESEEECCSSCC---------SCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCS
T ss_pred cccch-hhcCCCcceEEECcCCcc---------ccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcC
Confidence 99999 55 899999999999998 467888999998 9999999985 5588887776654 99999999
Q ss_pred CCCCCcCCcc---cC--CCCCCceeeccCccccccCCCCC-CCCCCcEEEccCcCCCCCCCCCCCCc---------cccC
Q 041975 178 CLKLEKLPEE---IG--NLGSLKNMVANEIAISQVPSSIS-CLNRVELLSFAGCKGRPPQMGLKLPI---------LFQS 242 (543)
Q Consensus 178 ~~~~~~~p~~---l~--~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~~~~~~lp~---------~~~l 242 (543)
|.+.+.+|.. ++ .+.+|+.|++++|.+..+|..+. .+++|+.|++++|.+.. +|. +.++
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~------ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS------IPENSLKPKDGNYKNT 727 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC------CCTTSSSCTTSCCTTG
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc------cChHHhcccccccccc
Confidence 9887766532 23 34589999999999998887665 78999999999998774 444 2234
Q ss_pred CCCCeEeccCCCCCcCCccCC--CCCCCCeEecCCCCCccCCccccCCCCCCEEeccc------ccccccCC----CCCC
Q 041975 243 QILENLSLINCNIIELPESLG--QLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDN------WKRFLSLP----ELPC 310 (543)
Q Consensus 243 ~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~------~~~l~~lp----~lp~ 310 (543)
++|+.|+|++|+++.+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+| .++.
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 489999999999999998887 89999999999999999998899999999999977 44455555 2344
Q ss_pred CcEEeecCCCCCccccCCcccccCCcceeeecccCCC
Q 041975 311 GSSVYARHCTSLETLSNLSTLFKPLCQKFDFCNCFKL 347 (543)
Q Consensus 311 ~~~l~~~~c~~L~~l~~~~~~~~~~~~~~~~~~c~~L 347 (543)
...|++.+|.- ..++... .+.++.+.+.+|+-.
T Consensus 808 L~~L~Ls~N~L-~~Ip~~l---~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 808 LIQLQIGSNDI-RKVDEKL---TPQLYILDIADNPNI 840 (876)
T ss_dssp CCEEECCSSCC-CBCCSCC---CSSSCEEECCSCTTC
T ss_pred CCEEECCCCCC-CccCHhh---cCCCCEEECCCCCCC
Confidence 44777776643 6665431 245777888877643
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.4e-23 Score=210.43 Aligned_cols=242 Identities=16% Similarity=0.175 Sum_probs=187.6
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEH 113 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~ 113 (543)
..++.+.+..+.+. .+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+|..+. ++
T Consensus 54 ~~l~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~-~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNK-----ISKIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP-SS 124 (332)
T ss_dssp TTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSC-----CCEECGGGSTTCT-TCCEEECCSSCCCSCCSSCC-TT
T ss_pred CCCeEEECCCCcCC--ccCHhHhhCCCCCcEEECCCCc-----cCccCHhHhhCcC-CCCEEECCCCcCCccCcccc-cc
Confidence 35666655555543 5566788999999999998886 5555577788886 89999999999988887665 78
Q ss_pred eeEEEcCCCCcccccccccccccC-ccccCCcCCcEEeccccccC--eecCCcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 114 LVSLEMPNSNIEQLWNDVQLEELP-SSIGNLSRLVTLDLRKCLRL--KKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
|++|++++|+++ .+| ..++.+++|++|++++|... +..|..+..+ +|++|++++|.+. .+|..+.
T Consensus 125 L~~L~l~~n~i~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~- 192 (332)
T 2ft3_A 125 LVELRIHDNRIR---------KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP- 192 (332)
T ss_dssp CCEEECCSSCCC---------CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC-
T ss_pred CCEEECCCCccC---------ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc-
Confidence 999999999885 344 35788999999999988553 2456667777 8999999987654 4666554
Q ss_pred CCCCceeeccCccccccC-CCCCCCCCCcEEEccCcCCCCCCCCCCCC-ccccCCCCCeEeccCCCCCcCCccCCCCCCC
Q 041975 191 LGSLKNMVANEIAISQVP-SSISCLNRVELLSFAGCKGRPPQMGLKLP-ILFQSQILENLSLINCNIIELPESLGQLPSL 268 (543)
Q Consensus 191 l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~lp-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 268 (543)
++|++|++++|.++.++ ..+..+++|+.|++++|.+... .+ .+..+++|+.|++++|+++.+|..+..+++|
T Consensus 193 -~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 266 (332)
T 2ft3_A 193 -ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-----ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266 (332)
T ss_dssp -SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-----CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred -CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-----ChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence 78999999999888765 6788889999999999887762 23 2788889999999999999998888889999
Q ss_pred CeEecCCCCCccCCcc-ccC------CCCCCEEeccccccc
Q 041975 269 KYLNLEENNFEKIPSN-IKQ------VSKLSLLILDNWKRF 302 (543)
Q Consensus 269 ~~L~Ls~n~l~~lp~~-l~~------l~~L~~L~L~~~~~l 302 (543)
+.|++++|+++.+|.. +.. .+.|+.|++++|+..
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9999999998877632 322 467888999888643
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.8e-23 Score=211.00 Aligned_cols=222 Identities=16% Similarity=0.174 Sum_probs=181.4
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCC-CCCC-CCCCeeEEEcCCCCcccccccccccccC
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTL-PSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELP 137 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp 137 (543)
++|++|++++|. .....+..+..++ +|++|++++|.++.+ |..+ .+++|++|++++|+++ .+|
T Consensus 52 ~~l~~L~L~~n~-----i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~l~ 116 (330)
T 1xku_A 52 PDTALLDLQNNK-----ITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK---------ELP 116 (330)
T ss_dssp TTCCEEECCSSC-----CCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS---------BCC
T ss_pred CCCeEEECCCCc-----CCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC---------ccC
Confidence 689999999986 4444455678886 999999999999877 5566 7899999999999884 566
Q ss_pred ccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCC--cCCcccCCCCCCceeeccCccccccCCCCCCCC
Q 041975 138 SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLE--KLPEEIGNLGSLKNMVANEIAISQVPSSISCLN 215 (543)
Q Consensus 138 ~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~--~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~ 215 (543)
..+. ++|++|++++|......+..+.++++|++|++++|.+.. ..+..++.+++|++|++++|.++.+|..+. +
T Consensus 117 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~ 192 (330)
T 1xku_A 117 EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--P 192 (330)
T ss_dssp SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--T
T ss_pred hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--c
Confidence 6554 789999999985544444557889999999999987743 567778899999999999999998887665 8
Q ss_pred CCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCC-ccCCCCCCCCeEecCCCCCccCCccccCCCCCCE
Q 041975 216 RVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELP-ESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSL 293 (543)
Q Consensus 216 ~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 293 (543)
+|+.|++++|.+... .+. +..+++|+.|++++|.+++++ ..+..+++|++|+|++|.++.+|..+..+++|+.
T Consensus 193 ~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 193 SLTELHLDGNKITKV-----DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267 (330)
T ss_dssp TCSEEECTTSCCCEE-----CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCE
T ss_pred cCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCE
Confidence 999999999987652 233 888999999999999999854 4788899999999999999999999999999999
Q ss_pred EecccccccccCC
Q 041975 294 LILDNWKRFLSLP 306 (543)
Q Consensus 294 L~L~~~~~l~~lp 306 (543)
|++++|+. +.+|
T Consensus 268 L~l~~N~i-~~~~ 279 (330)
T 1xku_A 268 VYLHNNNI-SAIG 279 (330)
T ss_dssp EECCSSCC-CCCC
T ss_pred EECCCCcC-CccC
Confidence 99999853 4444
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=225.51 Aligned_cols=83 Identities=7% Similarity=0.146 Sum_probs=64.9
Q ss_pred ccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCC--CCCCC
Q 041975 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKT--LPSKI 109 (543)
Q Consensus 32 ~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~--lp~~~ 109 (543)
+...++.+.|..+.+. .+.+.+|.++++|++|++++|. .. .+|.. .++ +|++|++++|.++. +|..+
T Consensus 43 ~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~-----l~-~lp~~--~l~-~L~~L~L~~N~l~~~~~p~~~ 111 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHNK-----LV-KISCH--PTV-NLKHLDLSFNAFDALPICKEF 111 (520)
T ss_dssp TCTTCCEEECCSSCCC--EEEGGGGTTCTTCCEEECCSSC-----CC-EEECC--CCC-CCSEEECCSSCCSSCCCCGGG
T ss_pred ccccccEEecCCCccC--CcChHHhhcccCCCEEecCCCc-----ee-ecCcc--ccC-CccEEeccCCccccccchhhh
Confidence 3456777777666654 5567899999999999999996 33 56655 565 99999999999976 45666
Q ss_pred -CCCCeeEEEcCCCCcc
Q 041975 110 -SPEHLVSLEMPNSNIE 125 (543)
Q Consensus 110 -~l~~L~~L~L~~n~l~ 125 (543)
.+++|++|++++|+++
T Consensus 112 ~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 112 GNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp GGCTTCCEEEEEESSCC
T ss_pred ccCCcceEEEecCcccc
Confidence 7899999999988875
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=6.6e-23 Score=208.23 Aligned_cols=255 Identities=18% Similarity=0.214 Sum_probs=198.5
Q ss_pred ccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCC
Q 041975 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISP 111 (543)
Q Consensus 32 ~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l 111 (543)
....++.+.+..+.+. .+.+ |.++++|++|++++|.+ . .+ ..+..++ +|++|++++|.+..++....+
T Consensus 64 ~~~~L~~L~l~~n~i~--~~~~--~~~l~~L~~L~L~~n~i-----~-~~-~~~~~l~-~L~~L~l~~n~i~~~~~~~~l 131 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQIT--DISP--LSNLVKLTNLYIGTNKI-----T-DI-SALQNLT-NLRELYLNEDNISDISPLANL 131 (347)
T ss_dssp GCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCC-----C-CC-GGGTTCT-TCSEEECTTSCCCCCGGGTTC
T ss_pred hcCCccEEEccCCccc--cchh--hhcCCcCCEEEccCCcc-----c-Cc-hHHcCCC-cCCEEECcCCcccCchhhccC
Confidence 3567788777766664 3333 99999999999999863 2 22 3577786 999999999999999885589
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNL 191 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l 191 (543)
++|++|++++|... .. +..+..+++|++|++++|. +..++. +..+++|++|++++|.+.+ ++. +..+
T Consensus 132 ~~L~~L~l~~n~~~--------~~-~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l 198 (347)
T 4fmz_A 132 TKMYSLNLGANHNL--------SD-LSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIED-ISP-LASL 198 (347)
T ss_dssp TTCCEEECTTCTTC--------CC-CGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGC
T ss_pred CceeEEECCCCCCc--------cc-ccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcccc-ccc-ccCC
Confidence 99999999999653 23 3348899999999999984 444554 7889999999999987554 443 7888
Q ss_pred CCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeE
Q 041975 192 GSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYL 271 (543)
Q Consensus 192 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 271 (543)
++|+.|++++|.+..++. +..+++|+.|++++|.+.. ++.+..+++|++|++++|.+++++ .+..+++|++|
T Consensus 199 ~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L 270 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD------LSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKML 270 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC------CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred CccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC------CcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEE
Confidence 999999999998887765 7788999999999998766 555888889999999999888874 67888999999
Q ss_pred ecCCCCCccCCccccCCCCCCEEecccccccccCC----CCCCCcEEeecCCC
Q 041975 272 NLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLP----ELPCGSSVYARHCT 320 (543)
Q Consensus 272 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp----~lp~~~~l~~~~c~ 320 (543)
++++|.++.++ .+..+++|+.|++++|+.....| .++....|++.+|+
T Consensus 271 ~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 271 NVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred EccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 99999988875 57888999999999996544332 33333355555554
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-23 Score=210.29 Aligned_cols=201 Identities=21% Similarity=0.220 Sum_probs=105.3
Q ss_pred cceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCC
Q 041975 91 EQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLK 168 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 168 (543)
+|++|++++|.++.+|.. + ++++|++|+|++|+++.+ ...|..+..+++|++|++++| .+..+|..+..++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~ 101 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------GCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLE 101 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE------EEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCT
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc------cCcccccccccccCEEECCCC-ccccChhhcCCCC
Confidence 555555555555555543 2 555555555555555311 122344445555555555555 3334554455555
Q ss_pred CCCEEeccCCCCCCcCC-cccCCCCCCceeeccCccccc-cCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCC
Q 041975 169 SLESLYLSGCLKLEKLP-EEIGNLGSLKNMVANEIAISQ-VPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQIL 245 (543)
Q Consensus 169 ~L~~L~Ls~~~~~~~~p-~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L 245 (543)
+|++|++++|.+.+..+ ..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+... .+|. +..+++|
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L 177 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----FLPDIFTELRNL 177 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----EECSCCTTCTTC
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----cchhHHhhCcCC
Confidence 55555555554333322 345555555555555555553 233455555566666555554320 0233 4555556
Q ss_pred CeEeccCCCCCcC-CccCCCCCCCCeEecCCCCCccCCc-cccCCCCCCEEeccccccc
Q 041975 246 ENLSLINCNIIEL-PESLGQLPSLKYLNLEENNFEKIPS-NIKQVSKLSLLILDNWKRF 302 (543)
Q Consensus 246 ~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~l 302 (543)
+.|++++|+++++ |..+..+++|++|+|++|.++.++. .+..+++|+.|++++|+..
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 6666666665553 4555556666666666666654442 4555566666666666443
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.6e-23 Score=227.26 Aligned_cols=253 Identities=15% Similarity=0.168 Sum_probs=200.2
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCC-CCCC-CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTL-PSKI-SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l 111 (543)
..++.+.|..+.+. .+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+ |..+ ++
T Consensus 32 ~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-----l~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCE-----IETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCcCEEECCCCCcC--EeChhhccCCccCcEEeCCCCc-----ccccCHHHhhchh-hcCEeECCCCcccccChhhcCCc
Confidence 56777766665554 5667789999999999999997 5566677888886 999999999999888 6666 89
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCe-ecCCcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLK-KVSSSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
++|++|++++|+++ ...|..++++++|++|++++|.... .+|..++++++|++|++++|.+.+..|..++.
T Consensus 104 ~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 104 TSLENLVAVETKLA--------SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TTCCEEECTTSCCC--------CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred ccCCEEEccCCccc--------cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 99999999999996 2233679999999999999996554 57989999999999999999888877777777
Q ss_pred CCCCc----eeeccCccccccCCCCCCCCCCcEEEccCcCCCC-------------------------------------
Q 041975 191 LGSLK----NMVANEIAISQVPSSISCLNRVELLSFAGCKGRP------------------------------------- 229 (543)
Q Consensus 191 l~~L~----~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~------------------------------------- 229 (543)
+.+|+ +|++++|.++.++.......+|+.|++++|....
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 77665 7999999999888877777789999999886531
Q ss_pred ----------------CCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCE
Q 041975 230 ----------------PQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSL 293 (543)
Q Consensus 230 ----------------~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 293 (543)
......+|.+..+++|+.|++++|.+..+| .+..+++|++|++++|.+..+| .+ .+++|+.
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~ 332 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKS 332 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCE
T ss_pred hhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccce
Confidence 000011223566788888888888888887 7888888888888888888888 44 7788888
Q ss_pred EecccccccccC
Q 041975 294 LILDNWKRFLSL 305 (543)
Q Consensus 294 L~L~~~~~l~~l 305 (543)
|++++|+....+
T Consensus 333 L~l~~n~~~~~~ 344 (606)
T 3vq2_A 333 LTLTMNKGSISF 344 (606)
T ss_dssp EEEESCSSCEEC
T ss_pred eeccCCcCccch
Confidence 888887655443
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=4.6e-23 Score=217.38 Aligned_cols=223 Identities=20% Similarity=0.208 Sum_probs=144.4
Q ss_pred ccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC-CcccC
Q 041975 90 NEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLCN 166 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~ 166 (543)
++|++|++++|.++.++. .| ++++|++|+|++|+++ ...|..+.++++|++|+|++|. +..+| ..+.+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------QIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------CcChhhccCcccCCEEECCCCc-CCccChhhhcc
Confidence 467777777777766543 34 6777777777777775 2334566777777777777764 33443 34666
Q ss_pred CCCCCEEeccCCCCCCcCCcccCCCCCCceeeccC-ccccccCC-CCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCC
Q 041975 167 LKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANE-IAISQVPS-SISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQI 244 (543)
Q Consensus 167 l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~ 244 (543)
+++|++|++++|.+....+..+.++++|+.|++++ +.+..++. .+..+++|+.|++++|.+.. +|.+..+++
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~l~~ 219 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVG 219 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS------CCCCTTCTT
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc------ccccccccc
Confidence 77777777777665544444567777777777776 45555554 46667777777777776654 566667777
Q ss_pred CCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCccC-CccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCC
Q 041975 245 LENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFEKI-PSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSL 322 (543)
Q Consensus 245 L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L 322 (543)
|+.|+|++|.+++ .|..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+. ..+|. .. +..+++|
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~---~~---~~~l~~L 292 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPH---DL---FTPLRYL 292 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCT---TS---STTCTTC
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC-CccCh---HH---hccccCC
Confidence 7777777777777 466677777777777777777744 45567777777777777743 33331 11 2346667
Q ss_pred ccccCCcccccC
Q 041975 323 ETLSNLSTLFKP 334 (543)
Q Consensus 323 ~~l~~~~~~~~~ 334 (543)
+.+....|.+.+
T Consensus 293 ~~L~L~~Np~~C 304 (452)
T 3zyi_A 293 VELHLHHNPWNC 304 (452)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCcCC
Confidence 777666665554
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=220.14 Aligned_cols=246 Identities=16% Similarity=0.169 Sum_probs=173.1
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCcccccccccccccC
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQLWNDVQLEELP 137 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp 137 (543)
++|++|++++|. .....+..+..++ +|++|++++|.++.++. .+ ++++|++|++++|+++ .+|
T Consensus 52 ~~L~~L~l~~n~-----i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~ 116 (353)
T 2z80_A 52 EAVKSLDLSNNR-----ITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS---------NLS 116 (353)
T ss_dssp TTCCEEECTTSC-----CCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS---------SCC
T ss_pred ccCcEEECCCCc-----CcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC---------cCC
Confidence 478888888876 3443344677776 88888888888877654 35 7788888888888874 455
Q ss_pred cc-ccCCcCCcEEeccccccCeecCC--cccCCCCCCEEeccCCCCCCcC-CcccCCCCCCceeeccCcccccc-CCCCC
Q 041975 138 SS-IGNLSRLVTLDLRKCLRLKKVSS--SLCNLKSLESLYLSGCLKLEKL-PEEIGNLGSLKNMVANEIAISQV-PSSIS 212 (543)
Q Consensus 138 ~~-l~~l~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~~~~~-p~~l~~l~~L~~L~l~~~~i~~l-p~~i~ 212 (543)
.. ++++++|++|++++| .+..+|. .+.++++|++|++++|...+.+ +..++++++|++|++++|.+..+ |..+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp HHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred HhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 44 778888888888887 4556665 5778888888888887544444 45678888888888888888755 67788
Q ss_pred CCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCC-cc---CCCCCCCCeEecCCCCCc-----cC
Q 041975 213 CLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELP-ES---LGQLPSLKYLNLEENNFE-----KI 281 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp-~~---l~~l~~L~~L~Ls~n~l~-----~l 281 (543)
.+++|+.|++++|.+.. +|. +..+++|+.|++++|.+++++ .. ....+.++.++++++.+. .+
T Consensus 196 ~l~~L~~L~l~~n~l~~------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 196 SIQNVSHLILHMKQHIL------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TCSEEEEEEEECSCSTT------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred ccccCCeecCCCCcccc------chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 88888888888887643 444 455788888888888887743 21 223566777777777665 46
Q ss_pred CccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcccccC
Q 041975 282 PSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTLFKP 334 (543)
Q Consensus 282 p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~~~~ 334 (543)
|..+..+++|+.|++++|+. +.+|. .. +.++++|+.+....+.+.+
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l-~~i~~---~~---~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQL-KSVPD---GI---FDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCC-CCCCT---TT---TTTCTTCCEEECCSSCBCC
T ss_pred HHHHhcccCCCEEECCCCCC-CccCH---HH---HhcCCCCCEEEeeCCCccC
Confidence 77777888888888888843 34442 11 2456777777777665443
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2e-23 Score=227.88 Aligned_cols=263 Identities=17% Similarity=0.164 Sum_probs=208.1
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCC--CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKI--SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l 111 (543)
..++.+.|..+.+ ..+.+.+|..+++|++|++++|. .....+..+..++ +|++|++++|.++.+|..+ .+
T Consensus 75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNA-----IRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCc-----CCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccC
Confidence 3555655555544 35667799999999999999997 4555566778887 9999999999999999864 79
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCC----------
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKL---------- 181 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~---------- 181 (543)
++|++|+|++|.++ ...|..++.+++|++|+|++|. +..++ +..+++|++|++++|.+.
T Consensus 147 ~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~ 215 (597)
T 3oja_B 147 PKLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEE 215 (597)
T ss_dssp TTCCEEECCSSCCC--------BCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred CCCCEEEeeCCcCC--------CCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCccccccCCchhhe
Confidence 99999999999996 4456679999999999999984 33343 334555555555544332
Q ss_pred --------CcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccC
Q 041975 182 --------EKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLIN 252 (543)
Q Consensus 182 --------~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~ 252 (543)
..+|..+ ..+|+.|++++|.++.. ..+..+++|+.|++++|.+... .|. +..+++|+.|+|++
T Consensus 216 L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 216 LDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI-----MYHPFVKMQRLERLYISN 287 (597)
T ss_dssp EECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE-----ESGGGTTCSSCCEEECTT
T ss_pred eeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCC-----CHHHhcCccCCCEEECCC
Confidence 2222222 36899999999999875 6688999999999999998763 454 88999999999999
Q ss_pred CCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcccc
Q 041975 253 CNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTLF 332 (543)
Q Consensus 253 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~~ 332 (543)
|.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+. ..+| +..+++|+.|....+.+
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~---------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLK---------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCC---------CCTTCCCSEEECCSSCE
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC-CCcC---------hhhcCCCCEEEeeCCCC
Confidence 9999999999999999999999999999999999999999999999964 3332 35678888888777744
Q ss_pred c
Q 041975 333 K 333 (543)
Q Consensus 333 ~ 333 (543)
.
T Consensus 358 ~ 358 (597)
T 3oja_B 358 D 358 (597)
T ss_dssp E
T ss_pred C
Confidence 4
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=4.4e-23 Score=216.73 Aligned_cols=223 Identities=19% Similarity=0.235 Sum_probs=152.4
Q ss_pred ccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC-CcccC
Q 041975 90 NEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLCN 166 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~ 166 (543)
++++.|++++|.++.++. .+ ++++|++|+|++|+++ ...+..+.++++|++|+|++| .+..+| ..+..
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--------TIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC--------EECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC--------ccChhhccCCccCCEEECCCC-cCCeeCHhHhhc
Confidence 477777777777776653 34 6777788888777775 223356777777888888777 344444 35777
Q ss_pred CCCCCEEeccCCCCCCcCCcccCCCCCCceeeccC-ccccccCC-CCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCC
Q 041975 167 LKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANE-IAISQVPS-SISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQI 244 (543)
Q Consensus 167 l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~ 244 (543)
+++|++|++++|.+....+..+.++++|++|++++ +.+..++. .+..+++|+.|++++|.+.. +|.+..+++
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~l~~ 208 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE------IPNLTPLIK 208 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS------CCCCTTCSS
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc------ccccCCCcc
Confidence 77788888877766555455677777788887777 44555554 56777778888887777664 666777777
Q ss_pred CCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCC
Q 041975 245 LENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSL 322 (543)
Q Consensus 245 L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L 322 (543)
|+.|+|++|++++ .|..+..+++|+.|+|++|+++.++ ..+..+++|+.|+|++|+. ..+| ... +..+++|
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~---~~~---~~~l~~L 281 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLP---HDL---FTPLHHL 281 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC-CCCC---TTT---TSSCTTC
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC-CccC---hhH---hccccCC
Confidence 8888888887777 4667777788888888888777543 4577777888888887743 3333 111 2346777
Q ss_pred ccccCCcccccC
Q 041975 323 ETLSNLSTLFKP 334 (543)
Q Consensus 323 ~~l~~~~~~~~~ 334 (543)
+.+....|.+.+
T Consensus 282 ~~L~L~~Np~~C 293 (440)
T 3zyj_A 282 ERIHLHHNPWNC 293 (440)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEcCCCCccC
Confidence 777777665554
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=4.4e-23 Score=223.57 Aligned_cols=278 Identities=13% Similarity=0.120 Sum_probs=196.4
Q ss_pred ccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCC--CCC
Q 041975 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLP--SKI 109 (543)
Q Consensus 32 ~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp--~~~ 109 (543)
+...++.+.|..+.+. .+.+.+|.++++|++|++++|. .. .+|.. .++ +|++|++++|.++.+| ..+
T Consensus 74 ~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~-----l~-~lp~~--~l~-~L~~L~Ls~N~l~~l~~p~~~ 142 (562)
T 3a79_B 74 FLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDVSHNR-----LQ-NISCC--PMA-SLRHLDLSFNDFDVLPVCKEF 142 (562)
T ss_dssp TCTTCCEEECCSCCCC--EECTTTTTTCTTCCEEECTTSC-----CC-EECSC--CCT-TCSEEECCSSCCSBCCCCGGG
T ss_pred cCCCccEEECCCCCCC--cCCHHHhCCCCCCCEEECCCCc-----CC-ccCcc--ccc-cCCEEECCCCCccccCchHhh
Confidence 4466777777766664 5667889999999999999996 33 56665 565 9999999999998765 455
Q ss_pred -CCCCeeEEEcCCCCcccccccc--cc---------------cccCccccCC----------------------------
Q 041975 110 -SPEHLVSLEMPNSNIEQLWNDV--QL---------------EELPSSIGNL---------------------------- 143 (543)
Q Consensus 110 -~l~~L~~L~L~~n~l~~l~~~~--~l---------------~~lp~~l~~l---------------------------- 143 (543)
++++|++|++++|+++...-.. .+ ...|..+..+
T Consensus 143 ~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 222 (562)
T 3a79_B 143 GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222 (562)
T ss_dssp GGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEE
T ss_pred cccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccce
Confidence 7889999999988775311000 00 1112222211
Q ss_pred -----------------------------------------------------cCCcEEeccccccCeecCCcc------
Q 041975 144 -----------------------------------------------------SRLVTLDLRKCLRLKKVSSSL------ 164 (543)
Q Consensus 144 -----------------------------------------------------~~L~~L~L~~~~~l~~lp~~i------ 164 (543)
.+|++|++++|...+.+|..+
T Consensus 223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302 (562)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence 156666666665444555544
Q ss_pred -----------------------------------------------cCCCCCCEEeccCCCCCCcCCcccCCCCCCcee
Q 041975 165 -----------------------------------------------CNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNM 197 (543)
Q Consensus 165 -----------------------------------------------~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L 197 (543)
..+++|++|++++|.+.+..|..++++++|+.|
T Consensus 303 ~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 382 (562)
T 3a79_B 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382 (562)
T ss_dssp SCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEE
T ss_pred cchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEE
Confidence 566788888888888777777788888888888
Q ss_pred eccCccccccC---CCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeE
Q 041975 198 VANEIAISQVP---SSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIE-LPESLGQLPSLKYL 271 (543)
Q Consensus 198 ~l~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L 271 (543)
++++|.++.++ ..+..+++|+.|++++|.+... +|. +..+++|+.|++++|++++ +|..+. ++|+.|
T Consensus 383 ~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L 455 (562)
T 3a79_B 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-----AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL 455 (562)
T ss_dssp ECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-----CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE
T ss_pred ECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-----cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE
Confidence 88888887544 4677888888888888887653 443 6677888888888888876 555444 688888
Q ss_pred ecCCCCCccCCccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcccccC
Q 041975 272 NLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTLFKP 334 (543)
Q Consensus 272 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~~~~ 334 (543)
+|++|+++.+|..+..+++|+.|++++|+. +.+|. . .+..+++|+.+....+.+.+
T Consensus 456 ~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~---~---~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 456 DLHNNRIMSIPKDVTHLQALQELNVASNQL-KSVPD---G---VFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp ECCSSCCCCCCTTTTSSCCCSEEECCSSCC-CCCCT---T---STTTCTTCCCEECCSCCBCC
T ss_pred ECCCCcCcccChhhcCCCCCCEEECCCCCC-CCCCH---H---HHhcCCCCCEEEecCCCcCC
Confidence 888888888888777888888888888853 34442 2 13567788887777765443
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=2e-23 Score=231.37 Aligned_cols=247 Identities=18% Similarity=0.184 Sum_probs=193.1
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l 111 (543)
..++.+.|..+.+. .+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.++.+|.. + ++
T Consensus 25 ~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNT-----ISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp TTCSEEECCSSCCC--CCCGGGGGGGTTCSEEECCSSC-----CCCCCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECCCCCCC--CcCHHHHhCCCcCcEEECCCCc-----cCccCHHHHhccc-CcCEEECCCCccCccChhhhccC
Confidence 56777777666554 5677889999999999999987 5555677788886 999999999999999974 5 89
Q ss_pred CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccC--
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIG-- 189 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~-- 189 (543)
++|++|++++|+++ ...|..++++++|++|+|++|...+..|..+.++++|++|++++|.+.+..+..++
T Consensus 97 ~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 97 TNLTELHLMSNSIQ--------KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp TTCSEEECCSSCCC--------CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred CCCCEEECCCCccC--------ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 99999999999985 33346799999999999999977676777788999999999999887766655543
Q ss_pred CCCCCceeeccCccccccC-CCCCCC---------------------------CCCcEEEccCcCCCCCCCCCCCCc-cc
Q 041975 190 NLGSLKNMVANEIAISQVP-SSISCL---------------------------NRVELLSFAGCKGRPPQMGLKLPI-LF 240 (543)
Q Consensus 190 ~l~~L~~L~l~~~~i~~lp-~~i~~l---------------------------~~L~~L~L~~~~~~~~~~~~~lp~-~~ 240 (543)
.+++|+.|++++|.++.++ ..+..+ ++|+.|++++|.+... .|. +.
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~-----~~~~~~ 243 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT-----SNTTFL 243 (680)
T ss_dssp TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE-----CTTTTG
T ss_pred ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc-----ChhHhh
Confidence 5689999999999888654 334433 4566666666665542 233 55
Q ss_pred cCC--CCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCcc-CCccccCCCCCCEEecccccc
Q 041975 241 QSQ--ILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFEK-IPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 241 ~l~--~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~~~~ 301 (543)
.++ +|+.|++++|+++. .|..++.+++|++|++++|++.. .|..+..+++|+.|++++|..
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 554 49999999998888 45678889999999999998884 456788888888888887643
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=230.83 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=134.1
Q ss_pred cccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeee-cCCcccccccceEEEECCCCCCCC-CCCC-
Q 041975 33 SEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHH-VRSMESLFNEQRYFHWDGYPLKTL-PSKI- 109 (543)
Q Consensus 33 ~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~- 109 (543)
...++.+.|..+.+. .+.+..|.++++|++|++++|. ....+ |..+..++ +|++|++++|.+..+ |..+
T Consensus 23 p~~l~~LdLs~N~i~--~i~~~~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 23 LNTTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CTTCCEEEEESCCCC--EECSSSCSSCCSCSEEEECTTC-----CCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSC
T ss_pred CCCcCEEECCCCcCC--ccChhHCcccccCeEEeCCCCC-----CccccCHHHhcCCC-CCCEEECCCCcCcccCHhHcc
Confidence 356777777776664 4556789999999999999885 33344 67788886 999999999999876 5566
Q ss_pred CCCCeeEEEcCCCCcccccccccccccCcc--ccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCc
Q 041975 110 SPEHLVSLEMPNSNIEQLWNDVQLEELPSS--IGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPE 186 (543)
Q Consensus 110 ~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~--l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~ 186 (543)
++++|++|+|++|.++ ..+|.. ++++++|++|+|++|...+..+ ..++++++|++|++++|.+.+..+.
T Consensus 95 ~l~~L~~L~Ls~n~l~--------~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLS--------DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp SCSSCCCEECTTCCCS--------SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred CCcccCEeeCcCCCCC--------cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 8999999999999886 445554 8889999999999986554433 4688899999999999888777777
Q ss_pred ccCCC--CCCceeeccCcccc-ccCCCCCCCCC------CcEEEccCcCC
Q 041975 187 EIGNL--GSLKNMVANEIAIS-QVPSSISCLNR------VELLSFAGCKG 227 (543)
Q Consensus 187 ~l~~l--~~L~~L~l~~~~i~-~lp~~i~~l~~------L~~L~L~~~~~ 227 (543)
.++.+ ++|+.|++++|.+. ..|..+..+.+ |+.|++++|.+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 77666 67777777777766 34444444333 66777766643
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=8.9e-23 Score=201.59 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=120.9
Q ss_pred ccceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeec-CCcccC
Q 041975 90 NEQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKV-SSSLCN 166 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l-p~~i~~ 166 (543)
++|+.|++++|.++.++.. + .+++|++|++++|.++ ...|..++.+++|++|++++|..++.+ |..+..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--------eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 3666666666666665542 3 5666666666666664 223455666666666666666434444 445666
Q ss_pred CCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCC
Q 041975 167 LKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQ 243 (543)
Q Consensus 167 l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~ 243 (543)
+++|++|++++|.+.+..|..++++++|++|++++|.++.++.. +..+++|+.|++++|.+.. ++. +..++
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~ 177 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------VPERAFRGLH 177 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------ECTTTTTTCT
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------cCHHHhcCcc
Confidence 66666666666665555555566666666666666666655543 5566666666666665543 332 55566
Q ss_pred CCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCccCCc-cccCCCCCCEEeccccc
Q 041975 244 ILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFEKIPS-NIKQVSKLSLLILDNWK 300 (543)
Q Consensus 244 ~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~ 300 (543)
+|+.|++++|.+++ .|..+..+++|+.|++++|+++.+|. .+..+++|+.|++++|+
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 66666666666666 35666666666666666666665553 35666666666666664
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.4e-22 Score=214.58 Aligned_cols=233 Identities=21% Similarity=0.295 Sum_probs=130.9
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEH 113 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~ 113 (543)
..++.+.+....+. .++ .+..+++|++|++++|.+ . .++. +..++ +|++|++++|.+..++....+++
T Consensus 46 ~~l~~L~l~~~~i~--~l~--~~~~l~~L~~L~Ls~n~l-----~-~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIK--SID--GVEYLNNLTQINFSNNQL-----T-DITP-LKNLT-KLVDILMNNNQIADITPLANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCC--CCT--TGGGCTTCCEEECCSSCC-----C-CCGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTT
T ss_pred ccccEEecCCCCCc--cCc--chhhhcCCCEEECCCCcc-----C-Cchh-hhccc-cCCEEECCCCccccChhhcCCCC
Confidence 34566666555543 232 377788888888888752 2 2222 66665 77777777777777766336777
Q ss_pred eeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC--------------------CcccCCCCCCEE
Q 041975 114 LVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS--------------------SSLCNLKSLESL 173 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp--------------------~~i~~l~~L~~L 173 (543)
|++|++++|.++. ++. ++.+++|++|++++|.. ..++ ..+.++++|++|
T Consensus 114 L~~L~L~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L 182 (466)
T 1o6v_A 114 LTGLTLFNNQITD---------IDP-LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 182 (466)
T ss_dssp CCEEECCSSCCCC---------CGG-GTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEE
T ss_pred CCEEECCCCCCCC---------ChH-HcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCcccCchhhccCCCCCEE
Confidence 7777777777652 222 44555555555554421 1111 114555666666
Q ss_pred eccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCC
Q 041975 174 YLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINC 253 (543)
Q Consensus 174 ~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n 253 (543)
++++|.+.. ++ .+..+++|++|++++|.+..++. ++.+++|+.|++++|.+.. ++.+..+++|+.|++++|
T Consensus 183 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 183 DISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD------IGTLASLTNLTDLDLANN 253 (466)
T ss_dssp ECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSS
T ss_pred ECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc------chhhhcCCCCCEEECCCC
Confidence 666665333 22 35566666666666666655443 4555666666666665443 344555555555555555
Q ss_pred CCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEeccccc
Q 041975 254 NIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 254 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 300 (543)
.+++++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 254 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 254 QISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ 298 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred ccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc
Confidence 5555433 4555555555555555554443 4455555555555553
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.9e-23 Score=226.93 Aligned_cols=273 Identities=16% Similarity=0.099 Sum_probs=219.3
Q ss_pred cccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCC-CCCCCCC
Q 041975 31 KGSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPL-KTLPSKI 109 (543)
Q Consensus 31 ~~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l-~~lp~~~ 109 (543)
.....++.+.+....+.. ++ .+..+++|+.|++++|. . ..+| .+ .++ +|+.|++++|.. ..+ ...
T Consensus 282 ~~l~~L~~L~l~~~~~~~--l~--~l~~~~~L~~L~l~~n~-----l-~~lp-~~-~l~-~L~~L~l~~n~~~~~~-~~~ 347 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKY--LE--DVPKHFKWQSLSIIRCQ-----L-KQFP-TL-DLP-FLKSLTLTMNKGSISF-KKV 347 (606)
T ss_dssp GGGTTCSEEEEESCCCCC--CC--CCCTTCCCSEEEEESCC-----C-SSCC-CC-CCS-SCCEEEEESCSSCEEC-CCC
T ss_pred ccCCCCCEEEecCccchh--hh--hccccccCCEEEccccc-----C-cccc-cC-CCC-ccceeeccCCcCccch-hhc
Confidence 345677788887776643 33 78899999999999996 3 5566 44 776 999999999954 333 333
Q ss_pred CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCC-ccc
Q 041975 110 SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLP-EEI 188 (543)
Q Consensus 110 ~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p-~~l 188 (543)
.+++|++|++++|+++.+ ..+|..++.+++|++|++++| .+..+|..+..+++|++|++++|.+.+..| ..+
T Consensus 348 ~l~~L~~L~ls~n~l~~~------~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFS------GCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp CCTTCCEEECCSSCEEEE------EECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred cCCCCCEEECcCCccCCC------cchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhh
Confidence 889999999999998622 234778899999999999998 466788889999999999999998887777 678
Q ss_pred CCCCCCceeeccCccccc-cCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCC
Q 041975 189 GNLGSLKNMVANEIAISQ-VPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQL 265 (543)
Q Consensus 189 ~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l 265 (543)
+.+++|++|++++|.+.. .|..+..+++|+.|++++|.+... .+|. +..+++|+.|++++|++++ .|..++.+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN----TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----EECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc----chHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 999999999999999985 667889999999999999987641 1455 7889999999999999998 57789999
Q ss_pred CCCCeEecCCCCCccC-CccccCCCCCCEEecccccccccCCCCCCCcEEeecCCC-CCccccCCcccccCCc
Q 041975 266 PSLKYLNLEENNFEKI-PSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCT-SLETLSNLSTLFKPLC 336 (543)
Q Consensus 266 ~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~-~L~~l~~~~~~~~~~~ 336 (543)
++|++|+|++|+++.+ |..+..+++|+.|++++|+ ++.+|. . +..++ +|+.+....+.+.+.|
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~---~----~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG---I----LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES---C----GGGSCTTCCEEECCSCCCCCSS
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH---h----HhhhcccCcEEEccCCCcccCC
Confidence 9999999999999965 7889999999999999996 445553 1 24454 5788877777655433
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=230.58 Aligned_cols=264 Identities=19% Similarity=0.217 Sum_probs=183.9
Q ss_pred ccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCC-CCCC--
Q 041975 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKT-LPSK-- 108 (543)
Q Consensus 32 ~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-lp~~-- 108 (543)
+...++.+.|..+.. ...+.+.+|.++++|++|++++|. .....|..+..++ +|++|++++|.+.. +|..
T Consensus 46 ~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~-----l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 46 FLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSK-----IYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp SCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCC-----CCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCC
T ss_pred ccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCc-----CcccCHhHccCCc-ccCEeeCcCCCCCcccccCcc
Confidence 445666666665533 456778899999999999999997 5666788999997 99999999999865 4543
Q ss_pred C-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCC--CC----------------
Q 041975 109 I-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNL--KS---------------- 169 (543)
Q Consensus 109 ~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l--~~---------------- 169 (543)
+ ++++|++|+|++|.++. ...+..++++++|++|+|++|......|..+..+ ++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~-------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRS-------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp CSSCSSCCEEEEESCCCCC-------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccccCCCCEEECCCCcccc-------cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 4 89999999999999863 1234578899999999999885544444333322 22
Q ss_pred --------------CCEEeccCCCCCCcCCcccCC--------------------------------------CCCCcee
Q 041975 170 --------------LESLYLSGCLKLEKLPEEIGN--------------------------------------LGSLKNM 197 (543)
Q Consensus 170 --------------L~~L~Ls~~~~~~~~p~~l~~--------------------------------------l~~L~~L 197 (543)
|++|++++|.+.+..+..+.. .++|+.|
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 666666666444333322211 1456777
Q ss_pred eccCcccccc-CCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecC
Q 041975 198 VANEIAISQV-PSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLE 274 (543)
Q Consensus 198 ~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls 274 (543)
++++|.+..+ +..+..+++|+.|++++|.+... .|. +.++++|+.|++++|.+++ .|..+..+++|+.|+++
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-----ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-----CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-----ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 7777766644 45567778888888888776652 233 7778888888888888877 46778888888888888
Q ss_pred CCCCccCCc-cccCCCCCCEEecccccccccCCCCCCCcEEe
Q 041975 275 ENNFEKIPS-NIKQVSKLSLLILDNWKRFLSLPELPCGSSVY 315 (543)
Q Consensus 275 ~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~ 315 (543)
+|.+..++. .+..+++|+.|++++|. +..++.+|....+.
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~L~ 387 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHFIPSIPDIF 387 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSSCCSCSEEE
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCC-CCcccCCCCcchhc
Confidence 888876653 47778888888888875 33444433333333
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.6e-22 Score=201.84 Aligned_cols=220 Identities=17% Similarity=0.196 Sum_probs=188.1
Q ss_pred CCccEEEEecCCCCCCcceeeecC-CcccccccceEEEECCCCCCCC---CCCC-CCCCeeEEEcCCCCccccccccccc
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVR-SMESLFNEQRYFHWDGYPLKTL---PSKI-SPEHLVSLEMPNSNIEQLWNDVQLE 134 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~-~l~~l~~~Lr~L~l~~~~l~~l---p~~~-~l~~L~~L~L~~n~l~~l~~~~~l~ 134 (543)
++|+.|++++|. .. .+|. .+..++ +|++|++++|.++.+ |..+ .+++|++|++++|.++
T Consensus 28 ~~l~~L~L~~n~-----l~-~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--------- 91 (306)
T 2z66_A 28 SSATRLELESNK-----LQ-SLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--------- 91 (306)
T ss_dssp TTCCEEECCSSC-----CC-CCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE---------
T ss_pred CCCCEEECCCCc-----cC-ccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccc---------
Confidence 689999999986 33 4554 467786 999999999999765 3333 7899999999999984
Q ss_pred ccCccccCCcCCcEEeccccccCeecC--CcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccc--cCCC
Q 041975 135 ELPSSIGNLSRLVTLDLRKCLRLKKVS--SSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQ--VPSS 210 (543)
Q Consensus 135 ~lp~~l~~l~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~--lp~~ 210 (543)
.+|..+..+++|++|++++| .+..++ ..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.. +|..
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred cChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 67888999999999999998 445554 468899999999999999888888889999999999999999985 8899
Q ss_pred CCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCc-cCCCCCCCCeEecCCCCCcc-CCccccC
Q 041975 211 ISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPE-SLGQLPSLKYLNLEENNFEK-IPSNIKQ 287 (543)
Q Consensus 211 i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~-lp~~l~~ 287 (543)
+..+++|+.|++++|.+... .|. +..+++|+.|++++|.+++++. .+..+++|+.|++++|.++. .|..+..
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQL-----SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred HhhCcCCCEEECCCCCcCCc-----CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 99999999999999987762 344 8889999999999999999654 78899999999999999984 5567888
Q ss_pred CC-CCCEEecccccc
Q 041975 288 VS-KLSLLILDNWKR 301 (543)
Q Consensus 288 l~-~L~~L~L~~~~~ 301 (543)
++ +|+.|++++|+.
T Consensus 246 ~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 246 FPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCTTCCEEECTTCCE
T ss_pred hhccCCEEEccCCCe
Confidence 84 899999999964
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=5.2e-22 Score=210.13 Aligned_cols=246 Identities=20% Similarity=0.234 Sum_probs=198.1
Q ss_pred ccccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCC
Q 041975 32 GSEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISP 111 (543)
Q Consensus 32 ~~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l 111 (543)
....++.+.+..+.+. .+.+ |.++++|++|++++|.+ .. ++. +..++ +|++|++++|.++.++....+
T Consensus 66 ~l~~L~~L~Ls~n~l~--~~~~--~~~l~~L~~L~l~~n~l-----~~-~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l 133 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLT--DITP--LKNLTKLVDILMNNNQI-----AD-ITP-LANLT-NLTGLTLFNNQITDIDPLKNL 133 (466)
T ss_dssp GCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCC-----CC-CGG-GTTCT-TCCEEECCSSCCCCCGGGTTC
T ss_pred hhcCCCEEECCCCccC--Cchh--hhccccCCEEECCCCcc-----cc-Chh-hcCCC-CCCEEECCCCCCCCChHHcCC
Confidence 3456777777666554 3333 89999999999999862 22 232 77786 999999999999999874489
Q ss_pred CCeeEEEcCCCCcccccccc------------cccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCC
Q 041975 112 EHLVSLEMPNSNIEQLWNDV------------QLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCL 179 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~------------~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 179 (543)
++|++|++++|.++.+..-. .+..++ .++++++|++|++++|. +..++. +.++++|++|++++|.
T Consensus 134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQ 210 (466)
T ss_dssp TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSC
T ss_pred CCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCc
Confidence 99999999999886542211 111222 37888999999999984 555554 7899999999999988
Q ss_pred CCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCC
Q 041975 180 KLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELP 259 (543)
Q Consensus 180 ~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp 259 (543)
+.+..| ++.+++|+.|++++|.++.++ .+..+++|+.|++++|.+.. ++.+..+++|+.|++++|.+++++
T Consensus 211 l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~------~~~~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 211 ISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN------LAPLSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC------CGGGTTCTTCSEEECCSSCCCCCG
T ss_pred cccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc------chhhhcCCCCCEEECCCCccCccc
Confidence 766554 788999999999999998875 57889999999999999776 455888999999999999999987
Q ss_pred ccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccc
Q 041975 260 ESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFL 303 (543)
Q Consensus 260 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~ 303 (543)
. +..+++|+.|++++|++..++. +..+++|+.|++++|+...
T Consensus 282 ~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 282 P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence 6 8899999999999999998875 8899999999999996543
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=220.06 Aligned_cols=113 Identities=22% Similarity=0.147 Sum_probs=68.7
Q ss_pred cCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc----------------cccCCCCCeEecc
Q 041975 188 IGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI----------------LFQSQILENLSLI 251 (543)
Q Consensus 188 l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~----------------~~~l~~L~~L~Ls 251 (543)
++.+++|+.|+++++.++.+|..+..+ +|+.|++++|.+... +...++. ...+++|+.|+++
T Consensus 278 ~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~ 355 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355 (570)
T ss_dssp TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSC-CBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECC
T ss_pred hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccccc-CcccccccCEEeCcCCccccccccccCCCCCEEeCc
Confidence 344566667777777776777666666 777777776665421 0000110 1355666666666
Q ss_pred CCCCCcC---CccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEeccccccc
Q 041975 252 NCNIIEL---PESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRF 302 (543)
Q Consensus 252 ~n~l~~l---p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 302 (543)
+|.++.. |..+..+++|++|++++|.+..+|..+..+++|+.|++++|...
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred CCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence 6666653 45566666777777777776666655666777777777776543
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=4.7e-24 Score=214.26 Aligned_cols=221 Identities=12% Similarity=0.056 Sum_probs=132.3
Q ss_pred HHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccc
Q 041975 54 SIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQL 133 (543)
Q Consensus 54 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l 133 (543)
..+..+++|+.|++++|. .....+..+..++ +|++|++++|.+..+++...+++|++|++++|+++
T Consensus 28 ~~~~~~~~L~~L~L~~n~-----l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~-------- 93 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNP-----LSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-------- 93 (317)
T ss_dssp HHHTTGGGCSEEECTTSC-----CCCCCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEE--------
T ss_pred HHhccCCCCCEEECcCCc-----cCcCCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCccc--------
Confidence 445555666666666665 3333334555554 66666666666655544225666667777666664
Q ss_pred cccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccC-CCC-
Q 041975 134 EELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVP-SSI- 211 (543)
Q Consensus 134 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp-~~i- 211 (543)
.++ ..++|++|++++|......+. .+++|++|++++|.+.+..+..++.+++|++|++++|.++.++ ..+
T Consensus 94 -~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 94 -ELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp -EEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred -ccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 222 235666666666633332222 2456666666666655555555666666666666666666432 233
Q ss_pred CCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCC
Q 041975 212 SCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKL 291 (543)
Q Consensus 212 ~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 291 (543)
..+++|+.|++++|.+.. ++....+++|++|++++|+++++|..+..+++|+.|+|++|.++.+|..+..+++|
T Consensus 166 ~~l~~L~~L~L~~N~l~~------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (317)
T ss_dssp GGTTTCCEEECTTSCCCE------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred hccCcCCEEECCCCcCcc------cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence 356666666666666544 34444466666777777666666666666666777777777666666666666667
Q ss_pred CEEeccccccc
Q 041975 292 SLLILDNWKRF 302 (543)
Q Consensus 292 ~~L~L~~~~~l 302 (543)
+.|++++|+..
T Consensus 240 ~~L~l~~N~~~ 250 (317)
T 3o53_A 240 EHFDLRGNGFH 250 (317)
T ss_dssp CEEECTTCCCB
T ss_pred CEEEccCCCcc
Confidence 77777666554
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=219.70 Aligned_cols=253 Identities=15% Similarity=0.150 Sum_probs=196.6
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI-SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l 111 (543)
..++.+.+..+.+. .+.+.+|.++++|++|++++|. .....+..+..++ +|++|++++|.++.+|. .+ ++
T Consensus 28 ~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCCC--EECTTTTTTCSSCCEEECTTCC-----CCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccEEEccCCccC--ccChhHhhCCCCceEEECCCCc-----CCccCcccccCch-hCCEEeCcCCcCCccCHhhhcCc
Confidence 45666666655554 5667789999999999999996 5555567788886 99999999999988874 45 89
Q ss_pred CCeeEEEcCCCCcccccccccccccCc-cccCCcCCcEEeccccccCe-ecCCcccCCCCCCEEeccCCCCCCcCCcccC
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPS-SIGNLSRLVTLDLRKCLRLK-KVSSSLCNLKSLESLYLSGCLKLEKLPEEIG 189 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~ 189 (543)
++|++|++++|+++ .++. .++++++|++|++++|.... .+|..++++++|++|++++|.+.+..|..++
T Consensus 100 ~~L~~L~L~~n~l~---------~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 100 SSLQKLVAVETNLA---------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp TTCCEEECTTSCCC---------CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred cccccccccccccc---------cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 99999999999986 4443 58999999999999985554 4788899999999999999988777777788
Q ss_pred CCCCC----ceeeccCccccccCCCCCCCCCCcEEEccCcCCCCC-----------------------------------
Q 041975 190 NLGSL----KNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPP----------------------------------- 230 (543)
Q Consensus 190 ~l~~L----~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~----------------------------------- 230 (543)
.+++| +.|++++|.++.++.......+|+.|++++|.....
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 250 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT
T ss_pred chhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhh
Confidence 88888 889999999987766555555788888887632110
Q ss_pred ------------------CCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCC
Q 041975 231 ------------------QMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKL 291 (543)
Q Consensus 231 ------------------~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 291 (543)
......|. +..+++|+.|++++|.++++|..+..+ +|++|++++|.+..+|. ..+++|
T Consensus 251 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L 327 (570)
T 2z63_A 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSL 327 (570)
T ss_dssp TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSC
T ss_pred hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--cccccc
Confidence 00001222 566788999999999988899888888 99999999998888875 467777
Q ss_pred CEEecccccccccCC
Q 041975 292 SLLILDNWKRFLSLP 306 (543)
Q Consensus 292 ~~L~L~~~~~l~~lp 306 (543)
+.|++++|......+
T Consensus 328 ~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 328 KRLTFTSNKGGNAFS 342 (570)
T ss_dssp CEEEEESCBSCCBCC
T ss_pred CEEeCcCCccccccc
Confidence 777777776554443
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=6.7e-22 Score=207.70 Aligned_cols=221 Identities=19% Similarity=0.247 Sum_probs=189.5
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCcccccccccccccC
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQLWNDVQLEELP 137 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp 137 (543)
++++.|++++|. .....+..+..++ +|++|++++|.++.++. .| ++++|++|+|++|+++ .+|
T Consensus 64 ~~l~~L~L~~n~-----i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~---------~~~ 128 (440)
T 3zyj_A 64 TNTRLLNLHENQ-----IQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT---------TIP 128 (440)
T ss_dssp TTCSEEECCSCC-----CCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS---------SCC
T ss_pred CCCcEEEccCCc-----CCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC---------eeC
Confidence 689999999997 5556667888886 99999999999988874 34 7999999999999995 444
Q ss_pred c-cccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCc-ccCCCCCCceeeccCccccccCCCCCCCC
Q 041975 138 S-SIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPE-EIGNLGSLKNMVANEIAISQVPSSISCLN 215 (543)
Q Consensus 138 ~-~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~-~l~~l~~L~~L~l~~~~i~~lp~~i~~l~ 215 (543)
. .+..+++|++|+|++|......+..+.++++|++|++++|+.++.++. .+.++++|++|++++|.++.+|. +..++
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 207 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLI 207 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCS
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCc
Confidence 4 689999999999999854444445688999999999999888887766 58899999999999999999885 88999
Q ss_pred CCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCccCCc-cccCCCCCC
Q 041975 216 RVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFEKIPS-NIKQVSKLS 292 (543)
Q Consensus 216 ~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~ 292 (543)
+|+.|++++|.+... .|. +.++++|+.|++++|+++. .+..+..+++|+.|+|++|+++.+|. .+..+++|+
T Consensus 208 ~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 208 KLDELDLSGNHLSAI-----RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp SCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred ccCEEECCCCccCcc-----ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 999999999987762 243 8899999999999999999 56788999999999999999998874 468899999
Q ss_pred EEecccccc
Q 041975 293 LLILDNWKR 301 (543)
Q Consensus 293 ~L~L~~~~~ 301 (543)
.|+|++|+.
T Consensus 283 ~L~L~~Np~ 291 (440)
T 3zyj_A 283 RIHLHHNPW 291 (440)
T ss_dssp EEECCSSCE
T ss_pred EEEcCCCCc
Confidence 999999964
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.7e-21 Score=205.44 Aligned_cols=210 Identities=17% Similarity=0.167 Sum_probs=181.3
Q ss_pred HHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccc
Q 041975 54 SIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQL 133 (543)
Q Consensus 54 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l 133 (543)
..++++++|++|++++|.+ . .+| ++..++ +|++|++++|.++.+| ...+++|++|++++|+++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l-----~-~~~-~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~-------- 98 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSI-----T-DMT-GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLT-------- 98 (457)
T ss_dssp EEHHHHTTCCEEECCSSCC-----C-CCT-TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCS--------
T ss_pred cChhHcCCCCEEEccCCCc-----c-cCh-hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCc--------
Confidence 3577889999999999863 2 234 688886 9999999999999987 338999999999999996
Q ss_pred cccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCc-cccccCCCCC
Q 041975 134 EELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEI-AISQVPSSIS 212 (543)
Q Consensus 134 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~-~i~~lp~~i~ 212 (543)
.+| ++.+++|++|++++| .+..+| +.++++|++|++++|.+.+ ++ ++.+++|++|++++| .+..+ .+.
T Consensus 99 -~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~ 167 (457)
T 3bz5_A 99 -NLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVT 167 (457)
T ss_dssp -CCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCT
T ss_pred -eee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccc
Confidence 343 889999999999999 455565 8899999999999988766 43 889999999999999 45555 478
Q ss_pred CCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCC
Q 041975 213 CLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLS 292 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 292 (543)
.+++|+.|++++|.+.. +| +..+++|+.|++++|++++++ ++.+++|+.|++++|+++.+| +..+++|+
T Consensus 168 ~l~~L~~L~ls~n~l~~------l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~ 236 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE------LD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLT 236 (457)
T ss_dssp TCTTCCEEECCSSCCCC------CC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCS
T ss_pred cCCcCCEEECCCCccce------ec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCC
Confidence 89999999999998776 55 788899999999999999984 889999999999999999988 88999999
Q ss_pred EEeccccccc
Q 041975 293 LLILDNWKRF 302 (543)
Q Consensus 293 ~L~L~~~~~l 302 (543)
.|++++|+..
T Consensus 237 ~L~l~~N~l~ 246 (457)
T 3bz5_A 237 YFDCSVNPLT 246 (457)
T ss_dssp EEECCSSCCS
T ss_pred EEEeeCCcCC
Confidence 9999999643
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=7e-22 Score=208.33 Aligned_cols=221 Identities=21% Similarity=0.227 Sum_probs=189.2
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCcccccccccccccC
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQLWNDVQLEELP 137 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp 137 (543)
++|+.|++++|. .....+..+..++ +|++|++++|.++.++. .+ ++++|++|+|++|+++ .+|
T Consensus 75 ~~l~~L~L~~n~-----i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---------~~~ 139 (452)
T 3zyi_A 75 SNTRYLNLMENN-----IQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT---------VIP 139 (452)
T ss_dssp TTCSEEECCSSC-----CCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS---------BCC
T ss_pred CCccEEECcCCc-----CceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC---------ccC
Confidence 589999999997 5666678888887 99999999999988774 45 7999999999999986 444
Q ss_pred -ccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCc-ccCCCCCCceeeccCccccccCCCCCCCC
Q 041975 138 -SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPE-EIGNLGSLKNMVANEIAISQVPSSISCLN 215 (543)
Q Consensus 138 -~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~-~l~~l~~L~~L~l~~~~i~~lp~~i~~l~ 215 (543)
..++.+++|++|+|++|......+..+.++++|++|++++|+.++.++. .+.++++|++|++++|.++.+|. +..++
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 218 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLV 218 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCT
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccc
Confidence 4588999999999999854443344688999999999999888888776 48899999999999999998874 88999
Q ss_pred CCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCccCCc-cccCCCCCC
Q 041975 216 RVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFEKIPS-NIKQVSKLS 292 (543)
Q Consensus 216 ~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~ 292 (543)
+|+.|++++|.+... .|. +.++++|+.|++++|+++. .|..+..+++|+.|+|++|+++.+|. .+..+++|+
T Consensus 219 ~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 219 GLEELEMSGNHFPEI-----RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp TCCEEECTTSCCSEE-----CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred cccEEECcCCcCccc-----CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 999999999998762 344 8899999999999999998 57788999999999999999998874 467899999
Q ss_pred EEecccccc
Q 041975 293 LLILDNWKR 301 (543)
Q Consensus 293 ~L~L~~~~~ 301 (543)
.|+|++|+.
T Consensus 294 ~L~L~~Np~ 302 (452)
T 3zyi_A 294 ELHLHHNPW 302 (452)
T ss_dssp EEECCSSCE
T ss_pred EEEccCCCc
Confidence 999999964
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=9.7e-23 Score=220.05 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=93.5
Q ss_pred CCCCCceeeccCccccc-c---CCCCCCCCCCcEEEccCcCCCCCCCCCCCCc----cccCCCCCeEeccCCCCCcCCcc
Q 041975 190 NLGSLKNMVANEIAISQ-V---PSSISCLNRVELLSFAGCKGRPPQMGLKLPI----LFQSQILENLSLINCNIIELPES 261 (543)
Q Consensus 190 ~l~~L~~L~l~~~~i~~-l---p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~----~~~l~~L~~L~Ls~n~l~~lp~~ 261 (543)
.+++|++|++++|.+.. + +..++.+++|+.|++++|.+.. ++. +..+++|++|++++|+++.+|..
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 405 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS------MQKTGEILLTLKNLTSLDISRNTFHPMPDS 405 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC------HHHHHHHGGGCTTCCEEECTTCCCCCCCSC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc------cccchhhhhcCCCCCEEECCCCCCccCChh
Confidence 57778888888887763 2 2346677788888888887654 331 66777788888888877777777
Q ss_pred CCCCCCCCeEecCCCCCccCCccc------------------cCCCCCCEEecccccccccCCC---CCCCcEEeecCCC
Q 041975 262 LGQLPSLKYLNLEENNFEKIPSNI------------------KQVSKLSLLILDNWKRFLSLPE---LPCGSSVYARHCT 320 (543)
Q Consensus 262 l~~l~~L~~L~Ls~n~l~~lp~~l------------------~~l~~L~~L~L~~~~~l~~lp~---lp~~~~l~~~~c~ 320 (543)
++.+++|++|++++|.++.+|..+ ..+++|+.|++++|+ ++.+|. ++....|++.++
T Consensus 406 ~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N- 483 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRN- 483 (549)
T ss_dssp CCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSS-
T ss_pred hcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCC-
Confidence 777777777777777776555432 267888888888885 446664 222226666654
Q ss_pred CCccccCCcccccCCcceeeecccC
Q 041975 321 SLETLSNLSTLFKPLCQKFDFCNCF 345 (543)
Q Consensus 321 ~L~~l~~~~~~~~~~~~~~~~~~c~ 345 (543)
.++.++...-...+.++.+.+.+++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCCcCHHHHhcCcccCEEEecCCC
Confidence 3444332111112235556665554
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.6e-21 Score=215.99 Aligned_cols=252 Identities=21% Similarity=0.251 Sum_probs=136.7
Q ss_pred EEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCccccc--------------------------
Q 041975 36 IEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLF-------------------------- 89 (543)
Q Consensus 36 v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~-------------------------- 89 (543)
++.+.+..+.+. .+.+.+|..+++|++|++++|. .....+..+..++
T Consensus 250 L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 250 LTMLDLSYNNLN--VVGNDSFAWLPQLEYFFLEYNN-----IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp CCEEECTTSCCC--EECTTTTTTCTTCCEEECCSCC-----BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred CCEEECCCCCcC--ccCcccccCcccccEeeCCCCc-----cCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 455444444332 3445667777777777777775 2333333333332
Q ss_pred ------ccceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCcc--cccc-----------------ccccccc-Ccccc
Q 041975 90 ------NEQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNIE--QLWN-----------------DVQLEEL-PSSIG 141 (543)
Q Consensus 90 ------~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~--~l~~-----------------~~~l~~l-p~~l~ 141 (543)
++|++|++++|.+..++.. + .+++|++|++++|.+. .+.. +..+..+ |..++
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 1555555555555544432 2 4555666665555321 0000 0011111 33455
Q ss_pred CCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCcccc---ccCCCCCCCCCC
Q 041975 142 NLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAIS---QVPSSISCLNRV 217 (543)
Q Consensus 142 ~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L 217 (543)
.+++|++|++++|...+.+| ..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 55566666666554444444 34555556666666655544444444555555555555555443 345556666667
Q ss_pred cEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCc---------cCCCCCCCCeEecCCCCCccCCc-cc
Q 041975 218 ELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPE---------SLGQLPSLKYLNLEENNFEKIPS-NI 285 (543)
Q Consensus 218 ~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~Ls~n~l~~lp~-~l 285 (543)
+.|++++|.+.. ++. +.++++|+.|++++|+++.++. .+..+++|+.|+|++|+++.+|. .+
T Consensus 483 ~~L~Ls~N~l~~------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 483 TILDLSNNNIAN------INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp CEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CEEECCCCCCCc------CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 777776666554 332 5666677777777776665321 25666777777777777776664 36
Q ss_pred cCCCCCCEEeccccc
Q 041975 286 KQVSKLSLLILDNWK 300 (543)
Q Consensus 286 ~~l~~L~~L~L~~~~ 300 (543)
.++++|+.|++++|+
T Consensus 557 ~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 557 KDLFELKIIDLGLNN 571 (680)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCcceeECCCCC
Confidence 667777777777664
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-23 Score=210.02 Aligned_cols=240 Identities=12% Similarity=0.086 Sum_probs=162.2
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEH 113 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~ 113 (543)
..++.+.|..+.+. .+.+.+|.++++|++|++++|. .....+ +..++ +|++|++++|.++.++. .++
T Consensus 34 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~--~~~l~-~L~~L~Ls~n~l~~l~~---~~~ 100 (317)
T 3o53_A 34 WNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNV-----LYETLD--LESLS-TLRTLDLNNNYVQELLV---GPS 100 (317)
T ss_dssp GGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSC-----CEEEEE--ETTCT-TCCEEECCSSEEEEEEE---CTT
T ss_pred CCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCc-----CCcchh--hhhcC-CCCEEECcCCccccccC---CCC
Confidence 35666655555443 4556777777778888877775 333322 66665 77788887777766553 367
Q ss_pred eeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCccc-CCCC
Q 041975 114 LVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEI-GNLG 192 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l-~~l~ 192 (543)
|++|++++|+++ .++. ..+++|++|++++|......|..+..+++|++|++++|.+.+..+..+ +.++
T Consensus 101 L~~L~l~~n~l~---------~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 101 IETLHAANNNIS---------RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp CCEEECCSSCCS---------EEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred cCEEECCCCccC---------CcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 777778777775 2222 235677777877775444444556777777888887777666555554 3677
Q ss_pred CCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeE
Q 041975 193 SLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYL 271 (543)
Q Consensus 193 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 271 (543)
+|++|++++|.++.++.. ..+++|+.|++++|.+.. +|. +..+++|+.|++++|+++.+|..+..+++|+.|
T Consensus 170 ~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~------l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242 (317)
T ss_dssp TCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred cCCEEECCCCcCcccccc-cccccCCEEECCCCcCCc------chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence 777888877777766543 347777788887777665 443 667777788888877777777777777778888
Q ss_pred ecCCCCCc--cCCccccCCCCCCEEeccccccccc
Q 041975 272 NLEENNFE--KIPSNIKQVSKLSLLILDNWKRFLS 304 (543)
Q Consensus 272 ~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~~~l~~ 304 (543)
++++|.+. .+|..+..+++|+.|++.+|+.++.
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 88877776 6666677777777777776665543
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=3.7e-22 Score=210.30 Aligned_cols=252 Identities=21% Similarity=0.186 Sum_probs=127.6
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCccccccc-------------ceEEEECCC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNE-------------QRYFHWDGY 100 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~-------------Lr~L~l~~~ 100 (543)
..++.+.+..+.+. .+ +.+|+++++|++|++++|. ....+|..+..+. + +++|++++|
T Consensus 11 ~~L~~L~l~~n~l~--~i-P~~i~~L~~L~~L~l~~n~-----~~~~~p~~~~~l~-~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 11 TFLQEPLRHSSNLT--EM-PVEAENVKSKTEYYNAWSE-----WERNAPPGNGEQR-EMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------CCHHHHHHHHHH-----HHHTSCTTSCCCH-HHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccchhhhcccCchh--hC-ChhHhcccchhhhhccCCc-----ccccCCcccccch-hcchhhhhhhhccCCCEEEecCC
Confidence 45666666665553 44 5578888888888888876 4556666666553 3 377777777
Q ss_pred CCCCCCCCCCCCCeeEEEcCCCCcccccccc-----------cccccCccccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 101 PLKTLPSKISPEHLVSLEMPNSNIEQLWNDV-----------QLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 101 ~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~-----------~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
.++.+|.. +++|++|++++|.++.+.... .+..+|.. .++|++|++++|. +..+| .++++++
T Consensus 82 ~l~~lp~~--~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~ 154 (454)
T 1jl5_A 82 GLSSLPEL--PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSF 154 (454)
T ss_dssp CCSCCCSC--CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTT
T ss_pred ccccCCCC--cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCC
Confidence 77666652 356666666666664221000 00111110 1456666666552 33355 3556666
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEe
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLS 249 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~ 249 (543)
|++|++++|.+.+ +|..+ .+|++|++++|.++.+| .+.++++|+.|++++|.+.. +|.. .++|+.|+
T Consensus 155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~------l~~~--~~~L~~L~ 221 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK------LPDL--PLSLESIV 221 (454)
T ss_dssp CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS------CCCC--CTTCCEEE
T ss_pred CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc------CCCC--cCcccEEE
Confidence 6666666654332 44332 35666666666666555 35666666666666665443 3331 13566666
Q ss_pred ccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCCCCCCc-EEeecCC
Q 041975 250 LINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPELPCGS-SVYARHC 319 (543)
Q Consensus 250 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~-~l~~~~c 319 (543)
+++|.++.+| .++.+++|++|++++|+++.+|.. +++|+.|++++|+ +..+|..+..+ .|++.++
T Consensus 222 l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 222 AGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 6666666666 366666666666666666666542 3566666666664 33455544444 5555543
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-22 Score=216.31 Aligned_cols=214 Identities=11% Similarity=0.046 Sum_probs=158.9
Q ss_pred CccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccc
Q 041975 61 RLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSI 140 (543)
Q Consensus 61 ~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l 140 (543)
+|+.|++++|. .....|..+..++ +|++|++++|.++.+++...+++|++|+|++|.++ .+|.
T Consensus 35 ~L~~L~Ls~n~-----l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~---------~l~~-- 97 (487)
T 3oja_A 35 NVKELDLSGNP-----LSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ---------ELLV-- 97 (487)
T ss_dssp GCCEEECCSSC-----CCCCCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE---------EEEE--
T ss_pred CccEEEeeCCc-----CCCCCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC---------CCCC--
Confidence 78888888876 4444456677776 88888888888866555337788888888888775 3332
Q ss_pred cCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccc-cCCCCC-CCCCCc
Q 041975 141 GNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQ-VPSSIS-CLNRVE 218 (543)
Q Consensus 141 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~-lp~~i~-~l~~L~ 218 (543)
.++|++|++++|......+. .+++|++|++++|.+.+..|..++.+++|+.|++++|.++. .|..+. .+++|+
T Consensus 98 --~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred --CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 37788888888744443332 45778888888888777777777888888888888888875 444554 678888
Q ss_pred EEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEeccc
Q 041975 219 LLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDN 298 (543)
Q Consensus 219 ~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 298 (543)
.|++++|.+.. +|....+++|+.|+|++|.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++
T Consensus 173 ~L~Ls~N~l~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 173 HLNLQYNFIYD------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp EEECTTSCCCE------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred EEecCCCcccc------ccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence 88888887665 455556788888888888888877778888888888888888888887788888888888888
Q ss_pred cccc
Q 041975 299 WKRF 302 (543)
Q Consensus 299 ~~~l 302 (543)
|+..
T Consensus 247 N~l~ 250 (487)
T 3oja_A 247 NGFH 250 (487)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 8654
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.7e-21 Score=192.32 Aligned_cols=221 Identities=20% Similarity=0.226 Sum_probs=184.1
Q ss_pred ceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCC
Q 041975 92 QRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLE 171 (543)
Q Consensus 92 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 171 (543)
-+.++.+++.++.+|..+ .++|++|++++|+++ ...+..++.+++|++|++++|......|..+.++++|+
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~--------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS--------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC--------ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCC
Confidence 478899999999999754 579999999999996 33345789999999999999966555588899999999
Q ss_pred EEeccCCCCCCcC-CcccCCCCCCceeeccCcccccc-CCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCe
Q 041975 172 SLYLSGCLKLEKL-PEEIGNLGSLKNMVANEIAISQV-PSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILEN 247 (543)
Q Consensus 172 ~L~Ls~~~~~~~~-p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~ 247 (543)
+|++++|..++.+ |..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+.. ++. +..+++|+.
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA------LPDDTFRDLGNLTH 157 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCE
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc------cCHhHhccCCCccE
Confidence 9999999744444 77899999999999999999977 5678899999999999999876 443 788999999
Q ss_pred EeccCCCCCcCCc-cCCCCCCCCeEecCCCCCccC-CccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccc
Q 041975 248 LSLINCNIIELPE-SLGQLPSLKYLNLEENNFEKI-PSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETL 325 (543)
Q Consensus 248 L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l 325 (543)
|++++|+++++|. .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|+.. .+| .. .+.++++|+.+
T Consensus 158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~---~~~~l~~L~~L 230 (285)
T 1ozn_A 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP---TE---ALAPLRALQYL 230 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCC---HH---HHTTCTTCCEE
T ss_pred EECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC-cCC---HH---HcccCcccCEE
Confidence 9999999999765 588999999999999999965 788999999999999999543 333 11 13567888888
Q ss_pred cCCcccccC
Q 041975 326 SNLSTLFKP 334 (543)
Q Consensus 326 ~~~~~~~~~ 334 (543)
....+.+..
T Consensus 231 ~l~~N~~~c 239 (285)
T 1ozn_A 231 RLNDNPWVC 239 (285)
T ss_dssp ECCSSCEEC
T ss_pred eccCCCccC
Confidence 877775443
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.5e-21 Score=191.75 Aligned_cols=197 Identities=24% Similarity=0.298 Sum_probs=165.5
Q ss_pred cccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcc
Q 041975 85 MESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSL 164 (543)
Q Consensus 85 l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i 164 (543)
+..++ +|+.++++++.++.+|..+. ++|++|+|++|+++ ...|..+..+++|++|+|++| .+..++..
T Consensus 6 ~~~l~-~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~- 73 (290)
T 1p9a_G 6 VSKVA-SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY--------TFSLATLMPYTRLTQLNLDRA-ELTKLQVD- 73 (290)
T ss_dssp EECST-TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS--------EEEGGGGTTCTTCCEEECTTS-CCCEEECC-
T ss_pred ccccC-CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC--------ccCHHHhhcCCCCCEEECCCC-ccCcccCC-
Confidence 44565 89999999999999987663 68999999999986 344667899999999999998 45556653
Q ss_pred cCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccC-CCCCCCCCCcEEEccCcCCCCCCCCCCCCc--ccc
Q 041975 165 CNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVP-SSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQ 241 (543)
Q Consensus 165 ~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~ 241 (543)
..+++|++|++++|.+ ..+|..+..+++|++|++++|.++.+| ..+..+++|+.|++++|.+.. +|. +..
T Consensus 74 ~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~ 146 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------LPPGLLTP 146 (290)
T ss_dssp SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC------CCTTTTTT
T ss_pred CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc------cChhhccc
Confidence 7889999999999764 478888889999999999999999887 468889999999999998776 444 678
Q ss_pred CCCCCeEeccCCCCCcCCcc-CCCCCCCCeEecCCCCCccCCccccCCCCCCEEeccccc
Q 041975 242 SQILENLSLINCNIIELPES-LGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 242 l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 300 (543)
+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+++.+|..+..+++|+.|++++|+
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 89999999999999997765 477999999999999999999888888899999999885
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=7.6e-22 Score=193.95 Aligned_cols=199 Identities=21% Similarity=0.174 Sum_probs=156.2
Q ss_pred cccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccC
Q 041975 89 FNEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCN 166 (543)
Q Consensus 89 ~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~ 166 (543)
+++|++|++++|.++.++. .+ ++++|++|++++|+++ ...+..++.+++|++|+|++|......+..+.+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--------ccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4578888888888887776 34 7888899999888885 233446788888999999888655555567888
Q ss_pred CCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccc--cCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccC
Q 041975 167 LKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQ--VPSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQS 242 (543)
Q Consensus 167 l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l 242 (543)
+++|++|++++|.+.+..+..++.+++|++|++++|.++. +|..+..+++|+.|++++|.+.. ++. +..+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l 172 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVL 172 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE------ECGGGGHHH
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc------CCHHHhhhh
Confidence 8899999998887766666578888889999999888875 67788888899999998888765 322 5555
Q ss_pred CCCC----eEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCcc-ccCCCCCCEEecccccc
Q 041975 243 QILE----NLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSN-IKQVSKLSLLILDNWKR 301 (543)
Q Consensus 243 ~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~~ 301 (543)
.+|+ .|++++|.++.++.......+|++|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred hhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 5555 88899999988777766667899999999999888754 57888999999998864
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=5.4e-22 Score=217.37 Aligned_cols=137 Identities=19% Similarity=0.231 Sum_probs=108.7
Q ss_pred cEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CCC
Q 041975 35 AIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SPE 112 (543)
Q Consensus 35 ~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~ 112 (543)
.++.+.|..+.+ ..+.+.+|.++++|++|++++|. .....+..|..++ +|++|++++|+++.+|.. | +++
T Consensus 53 ~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~-----i~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCc-----CCCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCC
Confidence 456655555444 46778899999999999999996 4555566788887 999999999999999864 5 899
Q ss_pred CeeEEEcCCCCcccccccccccccC-ccccCCcCCcEEeccccccCe-ecCCcccCCCCCCEEeccCCCCCCcCCccc
Q 041975 113 HLVSLEMPNSNIEQLWNDVQLEELP-SSIGNLSRLVTLDLRKCLRLK-KVSSSLCNLKSLESLYLSGCLKLEKLPEEI 188 (543)
Q Consensus 113 ~L~~L~L~~n~l~~l~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l 188 (543)
+|++|+|++|+++ .+| ..++++++|++|+|++|.... .+|..+.++++|++|++++|.+.+..|..+
T Consensus 125 ~L~~L~Ls~N~l~---------~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 125 SLQKLVAVETNLA---------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp TCCEEECTTSCCC---------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCEEECCCCcCC---------CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 9999999999985 444 468999999999999985433 467778899999999999988765544443
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=202.70 Aligned_cols=252 Identities=15% Similarity=0.183 Sum_probs=207.9
Q ss_pred ccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CC
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SP 111 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l 111 (543)
..++.+.+..+.+. .+.+.+|.++++|++|++++|. .....+..+..++ +|++|++++|.++.+|.. + .+
T Consensus 52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNG-----INTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPL 123 (353)
T ss_dssp TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTC
T ss_pred ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCc-----cCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCC
Confidence 36777777666664 5666789999999999999997 5555667788886 999999999999999886 4 79
Q ss_pred CCeeEEEcCCCCcccccccccccccCc--cccCCcCCcEEeccccccCeec-CCcccCCCCCCEEeccCCCCCCcCCccc
Q 041975 112 EHLVSLEMPNSNIEQLWNDVQLEELPS--SIGNLSRLVTLDLRKCLRLKKV-SSSLCNLKSLESLYLSGCLKLEKLPEEI 188 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~~~~~p~~l 188 (543)
++|++|++++|+++ .+|. .++.+++|++|++++|..++.+ +..+.++++|++|++++|.+.+..|..+
T Consensus 124 ~~L~~L~L~~n~l~---------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 124 SSLTFLNLLGNPYK---------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp TTCSEEECTTCCCS---------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred ccCCEEECCCCCCc---------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 99999999999985 5565 7889999999999998656665 5678999999999999999888889999
Q ss_pred CCCCCCceeeccCccccccCCCC-CCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCc-----CCccC
Q 041975 189 GNLGSLKNMVANEIAISQVPSSI-SCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIE-----LPESL 262 (543)
Q Consensus 189 ~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~-----lp~~l 262 (543)
+.+++|++|++++|.++.+|..+ ..+++|+.|++++|.+..... ..++.......++.++++++.+.+ +|..+
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF-SELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC-C------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred hccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc-cccccccccchhhccccccccccCcchhhhHHHH
Confidence 99999999999999998777654 358999999999999776311 112224456778888888888775 78888
Q ss_pred CCCCCCCeEecCCCCCccCCccc-cCCCCCCEEecccccccc
Q 041975 263 GQLPSLKYLNLEENNFEKIPSNI-KQVSKLSLLILDNWKRFL 303 (543)
Q Consensus 263 ~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~~~~l~ 303 (543)
..+++|++|++++|+++.+|..+ ..+++|+.|++++|+...
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 99999999999999999999874 899999999999997543
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=9.5e-23 Score=216.78 Aligned_cols=236 Identities=12% Similarity=0.077 Sum_probs=201.2
Q ss_pred cccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCC
Q 041975 33 SEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPE 112 (543)
Q Consensus 33 ~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~ 112 (543)
...++.+.|..+.+. .+.+.+|.++++|++|++++|. .....+ +..++ +|++|++++|.++.+|.. +
T Consensus 33 ~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~~---~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNV-----LYETLD--LESLS-TLRTLDLNNNYVQELLVG---P 99 (487)
T ss_dssp GGGCCEEECCSSCCC--CCCGGGGTTCTTCCEEECTTSC-----CEEEEE--CTTCT-TCCEEECCSSEEEEEEEC---T
T ss_pred CCCccEEEeeCCcCC--CCCHHHHhCCCCCCEEEeeCCC-----CCCCcc--cccCC-CCCEEEecCCcCCCCCCC---C
Confidence 347888777776664 5677899999999999999997 444444 77886 999999999999887753 8
Q ss_pred CeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccC-CC
Q 041975 113 HLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIG-NL 191 (543)
Q Consensus 113 ~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~-~l 191 (543)
+|++|++++|.++ .++. ..+++|++|+|++|...+..|..++++++|++|++++|.+.+..|..+. .+
T Consensus 100 ~L~~L~L~~N~l~---------~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 100 SIETLHAANNNIS---------RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp TCCEEECCSSCCC---------CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred CcCEEECcCCcCC---------CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 9999999999996 3333 3578999999999976666677889999999999999998888887776 79
Q ss_pred CCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCe
Q 041975 192 GSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKY 270 (543)
Q Consensus 192 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 270 (543)
++|+.|++++|.++.+|. ...+++|+.|++++|.+.. +|. +..+++|+.|++++|.++++|..++.+++|+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (487)
T ss_dssp TTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred CcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC------CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCE
Confidence 999999999999998865 4469999999999999876 444 88999999999999999999999999999999
Q ss_pred EecCCCCCc--cCCccccCCCCCCEEecccc
Q 041975 271 LNLEENNFE--KIPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 271 L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~ 299 (543)
|++++|.+. .+|..+..++.|+.|++..+
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 999999998 78888888999998888633
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.1e-20 Score=185.12 Aligned_cols=195 Identities=22% Similarity=0.364 Sum_probs=157.9
Q ss_pred ccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccC-ccccCCcCCcEEeccccccCeecCCc-ccCC
Q 041975 90 NEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELP-SSIGNLSRLVTLDLRKCLRLKKVSSS-LCNL 167 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~-i~~l 167 (543)
.+++.++++++.++.+|..+. ++|++|+|++|+++ .+| ..++++++|++|+|++|. +..+|.. +.++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS---------SLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKEL 84 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS---------CCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC---------eeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCC
Confidence 368889999999998887653 67999999999885 344 478889999999999884 4455544 5788
Q ss_pred CCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCC-CCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCC
Q 041975 168 KSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPS-SISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQI 244 (543)
Q Consensus 168 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~ 244 (543)
++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.. +|. +..+++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~ 158 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS------LPKGVFDKLTS 158 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTT
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc------cCHhHccCCcc
Confidence 999999999988766555667889999999999999887764 46788999999999988765 444 778889
Q ss_pred CCeEeccCCCCCcCCc-cCCCCCCCCeEecCCCCCccCCcc-ccCCCCCCEEecccccc
Q 041975 245 LENLSLINCNIIELPE-SLGQLPSLKYLNLEENNFEKIPSN-IKQVSKLSLLILDNWKR 301 (543)
Q Consensus 245 L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~~ 301 (543)
|+.|++++|.++.+|. .+..+++|++|+|++|+++.+|.. +..+++|+.|++++|+.
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 9999999999988664 478889999999999999887754 77888999999988853
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=6.5e-23 Score=205.43 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=171.9
Q ss_pred ccEEEEecCCCCCCcceeeecCCcc-------cccccceEEEECCCCCC-CCCCCC---CCCCeeEEEcCCCCccccccc
Q 041975 62 LRFFKFYNSISGENRCKVHHVRSME-------SLFNEQRYFHWDGYPLK-TLPSKI---SPEHLVSLEMPNSNIEQLWND 130 (543)
Q Consensus 62 Lr~L~l~~n~~~~~~~~~~~~~~l~-------~l~~~Lr~L~l~~~~l~-~lp~~~---~l~~L~~L~L~~n~l~~l~~~ 130 (543)
|+.|++++|.+ ....++..+. .++ +|++|++++|.++ .+|..+ .+++|++|+|++|+++
T Consensus 65 L~~L~L~~n~l----~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~----- 134 (312)
T 1wwl_A 65 IKSLSLKRLTV----RAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA----- 134 (312)
T ss_dssp HHHCCCCEEEE----EEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-----
T ss_pred Hhhcccccccc----cCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-----
Confidence 88888887752 1334554443 465 8999999999986 677753 6899999999999986
Q ss_pred ccccccCccccCC-----cCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCc--CCccc--CCCCCCceeeccC
Q 041975 131 VQLEELPSSIGNL-----SRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEK--LPEEI--GNLGSLKNMVANE 201 (543)
Q Consensus 131 ~~l~~lp~~l~~l-----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~--~p~~l--~~l~~L~~L~l~~ 201 (543)
.+|..++.+ ++|++|+|++|...+..|..++++++|++|++++|.+.+. +|..+ +.+++|++|++++
T Consensus 135 ----~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 135 ----TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210 (312)
T ss_dssp ----SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT
T ss_pred ----chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC
Confidence 336666666 8999999999866555557889999999999999887664 33344 7889999999999
Q ss_pred ccccccC---C-CCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCC
Q 041975 202 IAISQVP---S-SISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENN 277 (543)
Q Consensus 202 ~~i~~lp---~-~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 277 (543)
|.++.++ . .+..+++|+.|++++|.+.... ..+.+..+++|+.|++++|+++.+|..+. ++|++|+|++|+
T Consensus 211 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC
T ss_pred CcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC
Confidence 9988443 2 2357789999999999877641 12336667899999999999999988877 899999999999
Q ss_pred CccCCccccCCCCCCEEecccccc
Q 041975 278 FEKIPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 278 l~~lp~~l~~l~~L~~L~L~~~~~ 301 (543)
++.+|. +..+++|+.|++++|+.
T Consensus 286 l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 286 LDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCCChh-HhhCCCCCEEeccCCCC
Confidence 998886 88999999999999864
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=3.8e-20 Score=194.84 Aligned_cols=216 Identities=25% Similarity=0.253 Sum_probs=139.0
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCcc
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSS 139 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~ 139 (543)
++|+.|++++|.. .. +|.. . .+|++|++++|.++.+|.. .++|++|++++|+++ .+| +
T Consensus 91 ~~L~~L~l~~n~l-----~~-lp~~---~-~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~---------~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSL-----TE-LPEL---P-QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE---------KLP-E 148 (454)
T ss_dssp TTCSEEECCSSCC-----SS-CCCC---C-TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCS---------SCC-C
T ss_pred CCCCEEEccCCcC-----Cc-cccc---c-CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCC---------CCc-c
Confidence 5778888877752 22 3432 1 3777777777777766643 257777777777774 456 4
Q ss_pred ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcE
Q 041975 140 IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVEL 219 (543)
Q Consensus 140 l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 219 (543)
++++++|++|++++| .+..+|..+ .+|++|++++|.+.+ +| .++++++|++|++++|.++.+|... ++|+.
T Consensus 149 ~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~ 219 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLES 219 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCE
T ss_pred cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccE
Confidence 777777777777777 344466533 477777777766544 55 4777777777777777777666533 46777
Q ss_pred EEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccc
Q 041975 220 LSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 220 L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 299 (543)
|++++|.+.. +|.+..+++|+.|++++|+++++|.. +++|+.|++++|.++.+|.. +++|+.|++++|
T Consensus 220 L~l~~n~l~~------lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 220 IVAGNNILEE------LPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp EECCSSCCSS------CCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS
T ss_pred EECcCCcCCc------ccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCC
Confidence 7777776653 56666777777777777777776643 35677777777777766643 356667777666
Q ss_pred cccccCCCCCCCc-EEeecCC
Q 041975 300 KRFLSLPELPCGS-SVYARHC 319 (543)
Q Consensus 300 ~~l~~lp~lp~~~-~l~~~~c 319 (543)
+ +..+|.+|..+ .|++.++
T Consensus 288 ~-l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 288 I-FSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp C-CSEESCCCTTCCEEECCSS
T ss_pred c-cCcccCcCCcCCEEECcCC
Confidence 4 34455555444 5555443
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1.5e-20 Score=204.58 Aligned_cols=237 Identities=18% Similarity=0.146 Sum_probs=147.4
Q ss_pred cEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCe
Q 041975 35 AIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHL 114 (543)
Q Consensus 35 ~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L 114 (543)
.++.+.+..+++. .++...+ ++|+.|++++|.+ . .+|. .+ ++|++|++++|.++.+|. .+++|
T Consensus 41 ~l~~L~ls~n~L~--~lp~~l~---~~L~~L~L~~N~l-----~-~lp~---~l-~~L~~L~Ls~N~l~~lp~--~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGESGLT--TLPDCLP---AHITTLVIPDNNL-----T-SLPA---LP-PELRTLEVSGNQLTSLPV--LPPGL 103 (622)
T ss_dssp CCCEEECCSSCCS--CCCSCCC---TTCSEEEECSCCC-----S-CCCC---CC-TTCCEEEECSCCCSCCCC--CCTTC
T ss_pred CCcEEEecCCCcC--ccChhhC---CCCcEEEecCCCC-----C-CCCC---cC-CCCCEEEcCCCcCCcCCC--CCCCC
Confidence 3556666555554 3433222 6888888888862 2 3444 23 488888888888888887 67888
Q ss_pred eEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCccc------
Q 041975 115 VSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEI------ 188 (543)
Q Consensus 115 ~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l------ 188 (543)
++|+|++|+++ .+|. .+++|++|++++| .+..+|.. +++|++|++++|.+. .+|..+
T Consensus 104 ~~L~Ls~N~l~---------~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L 166 (622)
T 3g06_A 104 LELSIFSNPLT---------HLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKL 166 (622)
T ss_dssp CEEEECSCCCC---------CCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEE
T ss_pred CEEECcCCcCC---------CCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCC-CcCCccCCCCEE
Confidence 88888888875 3443 4556666666665 34445542 356666666665433 233221
Q ss_pred -----------CCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCc
Q 041975 189 -----------GNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIE 257 (543)
Q Consensus 189 -----------~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~ 257 (543)
..+++|+.|++++|.++.+|.. +++|+.|++++|.+.. +|. .+++|+.|++++|+++.
T Consensus 167 ~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~------l~~--~~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 167 WAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS------LPA--LPSGLKELIVSGNRLTS 235 (622)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS------CCC--CCTTCCEEECCSSCCSC
T ss_pred ECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc------cCC--CCCCCCEEEccCCccCc
Confidence 1225555555555555555442 2455555555555443 332 23678888888888888
Q ss_pred CCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcc
Q 041975 258 LPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLST 330 (543)
Q Consensus 258 lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~ 330 (543)
+| ..+++|+.|+|++|+++.+|. .+++|+.|++++|+. ..+| .. +.++++|+.|....|
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L-~~lp---~~----l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQL-TRLP---ES----LIHLSSETTVNLEGN 294 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-CSCC---GG----GGGSCTTCEEECCSC
T ss_pred CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCC-CcCC---HH----HhhccccCEEEecCC
Confidence 77 456788888888888888886 567888888888843 3444 22 245666666665555
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.7e-21 Score=190.88 Aligned_cols=192 Identities=21% Similarity=0.315 Sum_probs=136.8
Q ss_pred ccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCccc
Q 041975 86 ESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLC 165 (543)
Q Consensus 86 ~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~ 165 (543)
..++ +|+.|++++|.++.+|....+++|++|++++|.++ .++. +..+++|++|+|++|. +..++ .+.
T Consensus 38 ~~l~-~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~---------~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~ 104 (308)
T 1h6u_A 38 ADLD-GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT---------DLAP-LKNLTKITELELSGNP-LKNVS-AIA 104 (308)
T ss_dssp HHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---------CCGG-GTTCCSCCEEECCSCC-CSCCG-GGT
T ss_pred HHcC-CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC---------CChh-HccCCCCCEEEccCCc-CCCch-hhc
Confidence 3444 67777777777766664336677777777777664 3444 6677777777777763 44444 366
Q ss_pred CCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCC
Q 041975 166 NLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQIL 245 (543)
Q Consensus 166 ~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L 245 (543)
++++|++|++++|.+.+ ++. ++.+++|++|++++|.++.++. +..+++|+.|++++|.+.. ++.+..+++|
T Consensus 105 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------~~~l~~l~~L 175 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD------LTPLANLSKL 175 (308)
T ss_dssp TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC------CGGGTTCTTC
T ss_pred CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC------ChhhcCCCCC
Confidence 77777777777766444 333 6777777777777777776655 6777788888888877655 4557777888
Q ss_pred CeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccc
Q 041975 246 ENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 246 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 301 (543)
+.|++++|.+++++. +..+++|++|++++|.++.++ .+..+++|+.|++++|+.
T Consensus 176 ~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 176 TTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred CEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 888888888888764 778888888888888888777 378888888888888853
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3.4e-20 Score=182.14 Aligned_cols=226 Identities=22% Similarity=0.252 Sum_probs=182.4
Q ss_pred EEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEE
Q 041975 94 YFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESL 173 (543)
Q Consensus 94 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 173 (543)
..+..+..+..+|..+ .++|++|++++|+++ ...+..++++++|++|++++|......+..+.++++|++|
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR--------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCC--------EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCccc--------ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 4566677788888765 368999999999996 2233478999999999999995554455578999999999
Q ss_pred eccCCCCCCcCCcccCCCCCCceeeccCccccccCC-CCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEecc
Q 041975 174 YLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPS-SISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLI 251 (543)
Q Consensus 174 ~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls 251 (543)
++++|.+.+..+..+.++++|++|++++|.+..++. .+..+++|+.|++++|.+... .+|. +..+++|+.|+++
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----KLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----CCCGGGGGCTTCCEEECC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee----cCchhhccCCCCCEEECC
Confidence 999998877777889999999999999999998765 689999999999999998652 2565 8899999999999
Q ss_pred CCCCCcCC-ccCCCCCCCC----eEecCCCCCccCCccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCcccc
Q 041975 252 NCNIIELP-ESLGQLPSLK----YLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLS 326 (543)
Q Consensus 252 ~n~l~~lp-~~l~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~ 326 (543)
+|++++++ ..+..+++|+ .|++++|.++.++.......+|+.|++++|. ++.+|. .. +.++++|+.+.
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---~~---~~~l~~L~~L~ 230 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD---GI---FDRLTSLQKIW 230 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCT---TT---TTTCCSCCEEE
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCH---hH---hcccccccEEE
Confidence 99999954 5666666666 8999999999888777677799999999996 444442 11 25688899988
Q ss_pred CCcccccCCcceeeecccCCC
Q 041975 327 NLSTLFKPLCQKFDFCNCFKL 347 (543)
Q Consensus 327 ~~~~~~~~~~~~~~~~~c~~L 347 (543)
...+.+.+ +|+.+
T Consensus 231 l~~N~~~c--------~c~~l 243 (276)
T 2z62_A 231 LHTNPWDC--------SCPRI 243 (276)
T ss_dssp CCSSCBCC--------CTTTT
T ss_pred ccCCcccc--------cCCch
Confidence 87775543 67666
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=1.2e-21 Score=196.13 Aligned_cols=200 Identities=16% Similarity=0.104 Sum_probs=166.9
Q ss_pred CCCCccEEEEecCCCCCCcceeeecCCc--ccccccceEEEECCCCCCCCCCCC-CC-----CCeeEEEcCCCCcccccc
Q 041975 58 KMHRLRFFKFYNSISGENRCKVHHVRSM--ESLFNEQRYFHWDGYPLKTLPSKI-SP-----EHLVSLEMPNSNIEQLWN 129 (543)
Q Consensus 58 ~l~~Lr~L~l~~n~~~~~~~~~~~~~~l--~~l~~~Lr~L~l~~~~l~~lp~~~-~l-----~~L~~L~L~~n~l~~l~~ 129 (543)
++++|++|++++|. ....+|..+ ..++ +|++|++++|.++.+|..+ .+ ++|++|+|++|++.
T Consensus 93 ~l~~L~~L~L~~n~-----l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~---- 162 (312)
T 1wwl_A 93 GISGLQELTLENLE-----VTGTAPPPLLEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL---- 162 (312)
T ss_dssp TTSCCCEEEEEEEB-----CBSCCCCCSSSCCSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC----
T ss_pred CcCCccEEEccCCc-----ccchhHHHHHHhcCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc----
Confidence 79999999999997 555677765 6776 9999999999998887655 44 89999999999996
Q ss_pred cccccccCccccCCcCCcEEeccccccCee--cCCcc--cCCCCCCEEeccCCCCCC--cCC-cccCCCCCCceeeccCc
Q 041975 130 DVQLEELPSSIGNLSRLVTLDLRKCLRLKK--VSSSL--CNLKSLESLYLSGCLKLE--KLP-EEIGNLGSLKNMVANEI 202 (543)
Q Consensus 130 ~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~--lp~~i--~~l~~L~~L~Ls~~~~~~--~~p-~~l~~l~~L~~L~l~~~ 202 (543)
...|..++.+++|++|+|++|...+. +|..+ .++++|++|++++|.+.+ .++ ..+..+++|++|++++|
T Consensus 163 ----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 163 ----NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp ----CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred ----cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 34457899999999999999976554 34344 789999999999987653 222 23457899999999999
Q ss_pred cccccC--CCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCc
Q 041975 203 AISQVP--SSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 203 ~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
.++..+ ..+..+++|+.|++++|.+.. +|. +. ++|+.|++++|+++++|. +..+++|++|+|++|.++
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~------ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQ------VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCSS------CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccCh------hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 999755 456678999999999999874 666 43 899999999999999987 999999999999999987
Q ss_pred c
Q 041975 280 K 280 (543)
Q Consensus 280 ~ 280 (543)
.
T Consensus 310 ~ 310 (312)
T 1wwl_A 310 D 310 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.7e-19 Score=196.23 Aligned_cols=238 Identities=21% Similarity=0.215 Sum_probs=167.9
Q ss_pred CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCcc
Q 041975 60 HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSS 139 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~ 139 (543)
.+++.|++++|. . ..+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+++ .+|.
T Consensus 40 ~~l~~L~ls~n~-----L-~~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~---------~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESG-----L-TTLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT---------SLPV- 98 (622)
T ss_dssp HCCCEEECCSSC-----C-SCCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS---------CCCC-
T ss_pred CCCcEEEecCCC-----c-CccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC---------cCCC-
Confidence 469999999986 2 35666554 499999999999999998 6799999999999985 5665
Q ss_pred ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCC-----
Q 041975 140 IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCL----- 214 (543)
Q Consensus 140 l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l----- 214 (543)
.+++|++|+|++| .+..+|. .+++|++|++++|.+. .+|.. +++|++|++++|.++.+|..+.++
T Consensus 99 --~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L 168 (622)
T 3g06_A 99 --LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWA 168 (622)
T ss_dssp --CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred --CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEEC
Confidence 7899999999998 5666776 5789999999998754 46664 488999999999998877543221
Q ss_pred ------------CCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCC
Q 041975 215 ------------NRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIP 282 (543)
Q Consensus 215 ------------~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 282 (543)
++|+.|++++|.+.. +|. .+++|+.|++++|.++.+|.. +++|+.|+|++|+++.+|
T Consensus 169 ~~N~l~~l~~~~~~L~~L~Ls~N~l~~------l~~--~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 169 YNNQLTSLPMLPSGLQELSVSDNQLAS------LPT--LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSC------CCC--CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC
T ss_pred CCCCCCCCcccCCCCcEEECCCCCCCC------CCC--ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC
Confidence 444444554444333 222 234566666666666655532 367888888888888877
Q ss_pred ccccCCCCCCEEecccccccccCCCCCCCc-EEeecCCCCCccccCCcccccCCcceeeecccC
Q 041975 283 SNIKQVSKLSLLILDNWKRFLSLPELPCGS-SVYARHCTSLETLSNLSTLFKPLCQKFDFCNCF 345 (543)
Q Consensus 283 ~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~-~l~~~~c~~L~~l~~~~~~~~~~~~~~~~~~c~ 345 (543)
..+++|+.|++++| .+..+|..+..+ .|++.+| .|+.++.... ..+.+..+.+.+++
T Consensus 238 ---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~-~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 ---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESLI-HLSSETTVNLEGNP 295 (622)
T ss_dssp ---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCGGGG-GSCTTCEEECCSCC
T ss_pred ---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCHHHh-hccccCEEEecCCC
Confidence 45578888888888 455677655555 7777776 5555543211 12335666666654
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=5.2e-20 Score=201.61 Aligned_cols=164 Identities=23% Similarity=0.227 Sum_probs=131.9
Q ss_pred CcccCCCCCCEEeccCCCCCCcCC-cccCCCCCCceeeccCcccccc-CCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-
Q 041975 162 SSLCNLKSLESLYLSGCLKLEKLP-EEIGNLGSLKNMVANEIAISQV-PSSISCLNRVELLSFAGCKGRPPQMGLKLPI- 238 (543)
Q Consensus 162 ~~i~~l~~L~~L~Ls~~~~~~~~p-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~- 238 (543)
..+..+++|+.++++++......+ ..+..+.+++.++++.|.+... +..+..+++|+.|++++|..... ..|.
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~----~~~~~ 489 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----FLPDI 489 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----EECSC
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc----cCchh
Confidence 345678899999999887666554 3478899999999999999855 55677889999999999975442 1344
Q ss_pred cccCCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEEecccccccccCCCCCCCcEEee
Q 041975 239 LFQSQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYA 316 (543)
Q Consensus 239 ~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~ 316 (543)
+..+++|+.|+|++|++++ .|..++++++|++|+|++|+++.++ ..+..+++|+.|+|++|+.....|+. +
T Consensus 490 ~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------l 562 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-------L 562 (635)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC-------T
T ss_pred hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH-------H
Confidence 8889999999999999999 5778999999999999999999876 56889999999999999765544431 1
Q ss_pred cCC-CCCccccCCcccccCCc
Q 041975 317 RHC-TSLETLSNLSTLFKPLC 336 (543)
Q Consensus 317 ~~c-~~L~~l~~~~~~~~~~~ 336 (543)
.++ ++|+.|....|.+.+.|
T Consensus 563 ~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TCCCTTCCEEECTTCCBCCSG
T ss_pred HhhhCcCCEEEeeCCCCcccC
Confidence 233 57888888888777644
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=2.7e-20 Score=184.31 Aligned_cols=199 Identities=19% Similarity=0.176 Sum_probs=171.2
Q ss_pred HHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCccccccccc
Q 041975 55 IFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQLWNDVQ 132 (543)
Q Consensus 55 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~~~ 132 (543)
.+.++++++.++++++. ...+|..+ +++|+.|++++|.++.++. .+ .+++|++|+|++|.++
T Consensus 5 ~~~~l~~l~~l~~~~~~------l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------- 68 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN------LTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT------- 68 (290)
T ss_dssp EEECSTTCCEEECTTSC------CSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-------
T ss_pred cccccCCccEEECCCCC------CCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-------
Confidence 35778899999998875 23455544 3589999999999987754 34 8999999999999996
Q ss_pred ccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-C
Q 041975 133 LEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-I 211 (543)
Q Consensus 133 l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i 211 (543)
.++.. +.+++|++|+|++| .+..+|..+..+++|++|++++|.+.+..|..++.+++|++|++++|.++.+|.. +
T Consensus 69 --~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 69 --KLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp --EEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred --cccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 44443 78999999999998 6678998899999999999999987776667899999999999999999988765 5
Q ss_pred CCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCc
Q 041975 212 SCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 212 ~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
..+++|+.|++++|.+.. +|. +..+++|+.|+|++|+++.+|..+..+++|+.|+|++|.+.
T Consensus 145 ~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTE------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCTTCCEEECTTSCCSC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccCCCEEECCCCcCCc------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 789999999999999876 565 67899999999999999999999999999999999999876
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=9.3e-21 Score=189.35 Aligned_cols=199 Identities=16% Similarity=0.222 Sum_probs=171.0
Q ss_pred HhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccc
Q 041975 56 FTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEE 135 (543)
Q Consensus 56 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~ 135 (543)
+..+++|+.|++++|.+ ..++ .+..++ +|++|++++|.++.++....+++|++|+|++|+++ .
T Consensus 37 ~~~l~~L~~L~l~~~~i------~~l~-~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~---------~ 99 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGV------TTIE-GVQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLK---------N 99 (308)
T ss_dssp HHHHHTCCEEECTTSCC------CCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS---------C
T ss_pred HHHcCCcCEEEeeCCCc------cCch-hhhccC-CCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC---------C
Confidence 44677899999999862 2234 678886 99999999999999988448999999999999985 3
Q ss_pred cCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCC
Q 041975 136 LPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLN 215 (543)
Q Consensus 136 lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~ 215 (543)
++ .++.+++|++|++++| .+..++. +..+++|++|++++|.+.+. +. ++.+++|+.|++++|.++.++. +..++
T Consensus 100 ~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 173 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLS 173 (308)
T ss_dssp CG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred ch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCC
Confidence 44 5889999999999998 4555665 88999999999999876554 43 8899999999999999998877 88999
Q ss_pred CCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCcc
Q 041975 216 RVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSN 284 (543)
Q Consensus 216 ~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 284 (543)
+|+.|++++|.+.. ++.+..+++|+.|++++|++++++ .+..+++|+.|++++|.++..|..
T Consensus 174 ~L~~L~l~~n~l~~------~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 174 KLTTLKADDNKISD------ISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp TCCEEECCSSCCCC------CGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CCCEEECCCCccCc------ChhhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCee
Confidence 99999999999876 666889999999999999999987 489999999999999999887754
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.5e-20 Score=182.79 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=147.3
Q ss_pred cccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcc
Q 041975 85 MESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSL 164 (543)
Q Consensus 85 l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i 164 (543)
...++ +|+.|+++++.++.++....+++|++|++++|.++ .+ +.++.+++|++|++++|...+..+..+
T Consensus 37 ~~~l~-~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~---------~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELN-SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH---------DI-SALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHT-TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC---------CC-GGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccc-ceeeeeeCCCCcccccccccCCCCcEEECCCCCCC---------Cc-hhhcCCCCCCEEECCCCccCccChhHh
Confidence 44554 78888888888877776447888888888888875 23 357788888888888874444344446
Q ss_pred cCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCCCCcEEEccCcCCCCCCCCCCCCc--ccc
Q 041975 165 CNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQ 241 (543)
Q Consensus 165 ~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~ 241 (543)
.++++|++|++++|.+.+..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|.+.. ++. +..
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~ 179 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS------LPEGVFDK 179 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTT
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc------cCHHHhcC
Confidence 7788888888888877666666678888888888888888876654 5678888888888887665 333 677
Q ss_pred CCCCCeEeccCCCCCcCCc-cCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCCC
Q 041975 242 SQILENLSLINCNIIELPE-SLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLPE 307 (543)
Q Consensus 242 l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 307 (543)
+++|+.|++++|++++++. .++.+++|+.|++++|.+. +.+++|+.|+++.|.....+|.
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccC
Confidence 7888888888888888543 4677888888888888765 3356778888888877766663
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.5e-19 Score=177.02 Aligned_cols=194 Identities=19% Similarity=0.234 Sum_probs=160.8
Q ss_pred CccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCCcccccccccccccCc
Q 041975 61 RLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSNIEQLWNDVQLEELPS 138 (543)
Q Consensus 61 ~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~ 138 (543)
+.+.++++++. ...+|..+ +.+|+.|++++|.++.+|. .+ .+++|++|+|++|+++ .+|.
T Consensus 17 ~~~~l~~~~~~------l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~i~~ 78 (270)
T 2o6q_A 17 NKNSVDCSSKK------LTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---------TLPA 78 (270)
T ss_dssp TTTEEECTTSC------CSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS---------CCCT
T ss_pred CCCEEEccCCC------CCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC---------eeCh
Confidence 56788887775 22355443 3589999999999998886 35 8999999999999985 4454
Q ss_pred -cccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCC
Q 041975 139 -SIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLN 215 (543)
Q Consensus 139 -~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~ 215 (543)
.+..+++|++|+|++|. +..+| ..+.++++|++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..++
T Consensus 79 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 45789999999999985 44454 4578899999999999988777777789999999999999999988765 78899
Q ss_pred CCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCc-cCCCCCCCCeEecCCCCCc
Q 041975 216 RVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPE-SLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 216 ~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 279 (543)
+|+.|++++|.+.. ++. +..+++|+.|++++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 158 ~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLKR------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCcE------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 99999999998776 443 7889999999999999999765 4788999999999999876
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.4e-20 Score=177.30 Aligned_cols=193 Identities=17% Similarity=0.213 Sum_probs=133.4
Q ss_pred cccceEEEECCCCCCCCCC-CC-CCCCeeEEEcCCCC-cccccccccccccCc-cccCCcCCcEEeccccccCeecC-Cc
Q 041975 89 FNEQRYFHWDGYPLKTLPS-KI-SPEHLVSLEMPNSN-IEQLWNDVQLEELPS-SIGNLSRLVTLDLRKCLRLKKVS-SS 163 (543)
Q Consensus 89 ~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~-l~~l~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp-~~ 163 (543)
+.+|++|++++|.++.+|. .+ .+++|++|++++|+ ++ .++. .+.++++|++|++++|..+..+| ..
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~---------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ---------QLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC---------EECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc---------eeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 3467777777777777766 34 67777777777775 64 3443 56777777777777622444554 45
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCc---eeeccCc-cccccCC-CCCCCCCCc-EEEccCcCCCCCCCCCCCC
Q 041975 164 LCNLKSLESLYLSGCLKLEKLPEEIGNLGSLK---NMVANEI-AISQVPS-SISCLNRVE-LLSFAGCKGRPPQMGLKLP 237 (543)
Q Consensus 164 i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~---~L~l~~~-~i~~lp~-~i~~l~~L~-~L~L~~~~~~~~~~~~~lp 237 (543)
+.++++|++|++++|.+.+ +|. ++.+++|+ +|++++| .++.+|. .+..+++|+ .|++++|.+.. +|
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~------i~ 172 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------VQ 172 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE------EC
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc------cC
Confidence 6677777777777766444 665 66677776 7777777 7776664 366777777 78887777653 44
Q ss_pred c-cccCCCCCeEeccCCC-CCcCC-ccCCCC-CCCCeEecCCCCCccCCccccCCCCCCEEeccccc
Q 041975 238 I-LFQSQILENLSLINCN-IIELP-ESLGQL-PSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 238 ~-~~~l~~L~~L~Ls~n~-l~~lp-~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 300 (543)
. ....++|+.|++++|. ++.+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++.
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 4 2222678888888884 87754 456777 8888888888888888764 67888888888764
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2.8e-20 Score=182.44 Aligned_cols=209 Identities=14% Similarity=0.105 Sum_probs=168.9
Q ss_pred HHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCccccccccccc
Q 041975 55 IFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLE 134 (543)
Q Consensus 55 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~ 134 (543)
.+..+++|+.|++.+|.+ .....+..++ +|++|++++|.++.++....+++|++|++++|.++ .
T Consensus 36 ~~~~l~~L~~L~l~~~~i-------~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~--------~ 99 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDI-------KSVQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ--------S 99 (272)
T ss_dssp CHHHHTTCCEEECTTSCC-------CCCTTGGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC--------C
T ss_pred ccccccceeeeeeCCCCc-------ccccccccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC--------c
Confidence 356778899999998752 1234677886 99999999999988875558999999999999986 3
Q ss_pred ccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCC
Q 041975 135 ELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISC 213 (543)
Q Consensus 135 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~ 213 (543)
..+..++.+++|++|++++|......+..+.++++|++|++++|.+.+..+..++.+++|+.|++++|.++.++.. +..
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 3344578999999999999865544455578999999999999987766666678999999999999999987764 588
Q ss_pred CCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCc-cCCccccCCCC
Q 041975 214 LNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFE-KIPSNIKQVSK 290 (543)
Q Consensus 214 l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 290 (543)
+++|+.|++++|.+... .+. +..+++|+.|++++|.+. +.+++|+.|+++.|.++ .+|.+++.++.
T Consensus 180 l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSV-----PDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTCCEEECCSSCCSCC-----CTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CccCCEEECCCCcCCcc-----CHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 99999999999998762 233 788999999999999765 34568999999999888 88877766544
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.1e-19 Score=174.64 Aligned_cols=186 Identities=18% Similarity=0.232 Sum_probs=156.8
Q ss_pred CCCCCCCCCCCCeeEEEcCCCCcccccccccccccCc-cccCCcCCcEEeccccccCeecCC-cccCCCCCCEEeccC-C
Q 041975 102 LKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPS-SIGNLSRLVTLDLRKCLRLKKVSS-SLCNLKSLESLYLSG-C 178 (543)
Q Consensus 102 l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~-~ 178 (543)
++.+|. -..+|++|++++|+++ .+|. .++++++|++|++++|..++.++. .+.++++|++|++++ |
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~---------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLR---------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCS---------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred ccccCC--CCCcccEEEEeCCcce---------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 788888 3458999999999996 4444 789999999999999964666664 688999999999998 6
Q ss_pred CCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCc---EEEccCc-CCCCCCCCCCCCc--cccCCCCC-eEecc
Q 041975 179 LKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVE---LLSFAGC-KGRPPQMGLKLPI--LFQSQILE-NLSLI 251 (543)
Q Consensus 179 ~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~L~~~-~~~~~~~~~~lp~--~~~l~~L~-~L~Ls 251 (543)
.+.+..+..+.++++|++|++++|.++.+|. +..+++|+ .|++++| .+.. +|. +..+++|+ .|+++
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~------i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS------IPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE------ECTTTTTTTBSSEEEEECC
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh------cCcccccchhcceeEEEcC
Confidence 6555445678899999999999999999987 88888888 9999999 6554 554 88899999 99999
Q ss_pred CCCCCcCCccCCCCCCCCeEecCCC-CCccCC-ccccCC-CCCCEEecccccccccCC
Q 041975 252 NCNIIELPESLGQLPSLKYLNLEEN-NFEKIP-SNIKQV-SKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 252 ~n~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp-~~l~~l-~~L~~L~L~~~~~l~~lp 306 (543)
+|+++.+|......++|+.|++++| .++.+| ..+..+ ++|+.|++++|+. +.+|
T Consensus 165 ~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~ 221 (239)
T 2xwt_C 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALP 221 (239)
T ss_dssp SCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCC
T ss_pred CCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCC
Confidence 9999998877666689999999999 499886 457888 9999999999854 4555
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=5.7e-20 Score=183.74 Aligned_cols=225 Identities=16% Similarity=0.142 Sum_probs=163.8
Q ss_pred CCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCC-CCCCC---CCCCCeeEEEcCCCCcccccccccc
Q 041975 58 KMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLK-TLPSK---ISPEHLVSLEMPNSNIEQLWNDVQL 133 (543)
Q Consensus 58 ~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~---~~l~~L~~L~L~~n~l~~l~~~~~l 133 (543)
+...++.|.+.++..... ....+. ....++ +|++|++++|.+. ..|.. ..+++|++|+|++|+++
T Consensus 62 ~~~~l~~l~l~~~~~~~~-~~~~~~-~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-------- 130 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQ-LLVGAL-RVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-------- 130 (310)
T ss_dssp SSCCCCEEEECSCCCBHH-HHHHHH-HHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS--------
T ss_pred hhcceeEEEEeCCcCCHH-HHHHHH-HhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc--------
Confidence 344577788876642100 000111 112233 6999999999885 44544 35888999999999886
Q ss_pred cccC----ccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCc--C--CcccCCCCCCceeeccCcccc
Q 041975 134 EELP----SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEK--L--PEEIGNLGSLKNMVANEIAIS 205 (543)
Q Consensus 134 ~~lp----~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~--~--p~~l~~l~~L~~L~l~~~~i~ 205 (543)
...+ ..+..+++|++|+|++|......|..+.++++|++|++++|.+.+. + +..++.+++|++|++++|.++
T Consensus 131 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 131 TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 2222 2445788999999999866555667788899999999999876542 2 233467889999999999887
Q ss_pred ccCCC----CCCCCCCcEEEccCcCCCCCCCCCCCCc-ccc---CCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCC
Q 041975 206 QVPSS----ISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQ---SQILENLSLINCNIIELPESLGQLPSLKYLNLEENN 277 (543)
Q Consensus 206 ~lp~~----i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~---l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 277 (543)
.++.. +..+++|+.|++++|.+... .|. +.. +++|++|++++|+++.+|..+. ++|+.|+|++|+
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLRAT-----VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCCCC-----CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCCcc-----chhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc
Confidence 66542 46778999999999987763 343 333 3789999999999999888775 799999999999
Q ss_pred CccCCccccCCCCCCEEecccccc
Q 041975 278 FEKIPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 278 l~~lp~~l~~l~~L~~L~L~~~~~ 301 (543)
++.+|. +..+++|+.|++++|+.
T Consensus 284 l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 284 LNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CCCCch-hhhCCCccEEECcCCCC
Confidence 998875 67889999999999864
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=9.2e-19 Score=169.46 Aligned_cols=173 Identities=17% Similarity=0.268 Sum_probs=109.7
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSL 170 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 170 (543)
..+.++++++.++.+|..+. ++|++|+|++|+++ ...+..++++++|++|+|++|......|..+.++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA--------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC--------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 67788888888888887654 57888888888886 3334467778888888888775544445556777777
Q ss_pred CEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEe
Q 041975 171 ESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLS 249 (543)
Q Consensus 171 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~ 249 (543)
++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|+.|++
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L--------------------------- 138 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL--------------------------- 138 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC---------------------------
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC---------------------------
Confidence 7777777766655555566677777777777766655543 344455555544
Q ss_pred ccCCCCCcCCc-cCCCCCCCCeEecCCCCCccCCc-cccCCCCCCEEeccccc
Q 041975 250 LINCNIIELPE-SLGQLPSLKYLNLEENNFEKIPS-NIKQVSKLSLLILDNWK 300 (543)
Q Consensus 250 Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~ 300 (543)
++|+++++|. .++.+++|++|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 139 -s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 139 -NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 4444544333 34555555555555555554443 34555555555555554
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2.9e-21 Score=199.25 Aligned_cols=243 Identities=13% Similarity=0.107 Sum_probs=181.2
Q ss_pred hHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCC----CC--------CCCCCeeEEEcC
Q 041975 53 PSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLP----SK--------ISPEHLVSLEMP 120 (543)
Q Consensus 53 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp----~~--------~~l~~L~~L~L~ 120 (543)
..++..+++|+.|++++|.+... ....++..+..++ +|++|++++|.+..+. .. ..+++|++|+|+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTE-AARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHH-HHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHH-HHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 56788899999999999862110 0111334466776 9999999998766443 22 267899999999
Q ss_pred CCCcccccccccccccCccccCCcCCcEEeccccccCee----cCCcccCC---------CCCCEEeccCCCCC-CcCC-
Q 041975 121 NSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKK----VSSSLCNL---------KSLESLYLSGCLKL-EKLP- 185 (543)
Q Consensus 121 ~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~----lp~~i~~l---------~~L~~L~Ls~~~~~-~~~p- 185 (543)
+|.+... ....+|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|.+. ..+|
T Consensus 103 ~n~l~~~----~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 103 DNAFGPT----AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp SCCCCTT----THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCcCCHH----HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 9998621 1124788889999999999999865322 33334444 89999999998876 3444
Q ss_pred --cccCCCCCCceeeccCcccc------ccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCC
Q 041975 186 --EEIGNLGSLKNMVANEIAIS------QVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNII 256 (543)
Q Consensus 186 --~~l~~l~~L~~L~l~~~~i~------~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~ 256 (543)
..+..+++|++|++++|.++ -.+..+..+++|+.|++++|.+.... ...+|. +..+++|+.|+|++|.++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-HHHHHHHHccCCCcCEEECCCCCCc
Confidence 45678899999999999988 24447889999999999999863100 001444 778899999999999998
Q ss_pred c-----CCccC--CCCCCCCeEecCCCCCcc-----CCccc-cCCCCCCEEeccccccc
Q 041975 257 E-----LPESL--GQLPSLKYLNLEENNFEK-----IPSNI-KQVSKLSLLILDNWKRF 302 (543)
Q Consensus 257 ~-----lp~~l--~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~~~~l 302 (543)
. ++..+ +.+++|++|+|++|.++. +|..+ .++++|+.|++++|+..
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 6 46666 458999999999999986 88777 66899999999999754
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.8e-18 Score=167.38 Aligned_cols=173 Identities=21% Similarity=0.246 Sum_probs=117.5
Q ss_pred CcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCC-CCCCCCCCcEEEccC
Q 041975 146 LVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPS-SISCLNRVELLSFAG 224 (543)
Q Consensus 146 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~ 224 (543)
.++++++++ .+..+|..+. ++|++|++++|.+.+..+..++++++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 16 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 445555543 4445554433 456666666655555555556666666666666666664443 356666666677766
Q ss_pred cCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCcc-CCCCCCCCeEecCCCCCccCCc-cccCCCCCCEEeccccc
Q 041975 225 CKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPES-LGQLPSLKYLNLEENNFEKIPS-NIKQVSKLSLLILDNWK 300 (543)
Q Consensus 225 ~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~ 300 (543)
|.+.. ++. +..+++|++|+|++|+++.+|.. +..+++|++|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 93 n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 93 NQLAS------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp SCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred Ccccc------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 66554 332 66778888999999989886654 6889999999999999998886 58899999999999996
Q ss_pred ccccCCCCCCCcEEeecCCCCCccccCCcccccC
Q 041975 301 RFLSLPELPCGSSVYARHCTSLETLSNLSTLFKP 334 (543)
Q Consensus 301 ~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~~~~ 334 (543)
.. .+|. . .+.++++|+.+....+.+..
T Consensus 167 l~-~~~~---~---~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 167 LQ-SVPH---G---AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CS-CCCT---T---TTTTCTTCCEEECCSCCBCT
T ss_pred CC-ccCH---H---HHhCCCCCCEEEeeCCceeC
Confidence 43 3331 1 12467888888887775543
No 83
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=8.1e-19 Score=188.64 Aligned_cols=156 Identities=20% Similarity=0.213 Sum_probs=72.5
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSL 170 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 170 (543)
+|++|++++|.++.+| -.+++|++|+|++|+|+ .+|. +.. +|++|+|++| .+..+|. .+++|
T Consensus 81 ~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~---------~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L 142 (571)
T 3cvr_A 81 QITVLEITQNALISLP--ELPASLEYLDACDNRLS---------TLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALL 142 (571)
T ss_dssp TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS---------CCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTC
T ss_pred CCCEEECcCCCCcccc--cccCCCCEEEccCCCCC---------Ccch-hhc--CCCEEECCCC-cCCCCCC---cCccc
Confidence 5555555555555555 22455555555555553 2343 332 5555555554 2233444 34555
Q ss_pred CEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCC-----
Q 041975 171 ESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQIL----- 245 (543)
Q Consensus 171 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L----- 245 (543)
++|++++|.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.+.. +|.+.. +|
T Consensus 143 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~------lp~~~~--~L~~~~~ 207 (571)
T 3cvr_A 143 EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES------LPAVPV--RNHHSEE 207 (571)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS------CCCCC----------
T ss_pred cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc------hhhHHH--hhhcccc
Confidence 555555544332 333 34455555555555555444 33 455555555554432 232111 33
Q ss_pred --CeEeccCCCCCcCCccCCCCCCCCeEecCCCCCc
Q 041975 246 --ENLSLINCNIIELPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 246 --~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
+.|+|++|+++.+|..+..+++|+.|+|++|.++
T Consensus 208 ~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 208 TEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred cceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 4455555544444444444444555555555444
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=179.29 Aligned_cols=200 Identities=14% Similarity=0.054 Sum_probs=162.4
Q ss_pred hCCCCccEEEEecCCCCCCcceeeecCCc--ccccccceEEEECCCCCCCCCCC------CCCCCeeEEEcCCCCccccc
Q 041975 57 TKMHRLRFFKFYNSISGENRCKVHHVRSM--ESLFNEQRYFHWDGYPLKTLPSK------ISPEHLVSLEMPNSNIEQLW 128 (543)
Q Consensus 57 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l--~~l~~~Lr~L~l~~~~l~~lp~~------~~l~~L~~L~L~~n~l~~l~ 128 (543)
..+++|+.|++++|. .....|..+ ..++ +|++|++++|.+...... ..+++|++|+|++|++.
T Consensus 88 ~~~~~L~~L~l~~n~-----l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--- 158 (310)
T 4glp_A 88 LAYSRLKELTLEDLK-----ITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP--- 158 (310)
T ss_dssp HHHSCCCEEEEESCC-----CBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC---
T ss_pred cccCceeEEEeeCCE-----eccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc---
Confidence 345779999999997 555667666 6776 999999999998753221 25899999999999996
Q ss_pred ccccccccCccccCCcCCcEEeccccccCee--cC--CcccCCCCCCEEeccCCCCCCcCCc----ccCCCCCCceeecc
Q 041975 129 NDVQLEELPSSIGNLSRLVTLDLRKCLRLKK--VS--SSLCNLKSLESLYLSGCLKLEKLPE----EIGNLGSLKNMVAN 200 (543)
Q Consensus 129 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~Ls~~~~~~~~p~----~l~~l~~L~~L~l~ 200 (543)
...|..++.+++|++|+|++|...+. ++ ..+..+++|++|++++|.+. .++. .++.+++|++|+++
T Consensus 159 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 159 -----AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp -----CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECT
T ss_pred -----hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECC
Confidence 45567889999999999999965542 32 33468999999999998764 3343 25788999999999
Q ss_pred Ccccccc-CCCCCCC---CCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCC
Q 041975 201 EIAISQV-PSSISCL---NRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEE 275 (543)
Q Consensus 201 ~~~i~~l-p~~i~~l---~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 275 (543)
+|.++.. |..+..+ ++|+.|++++|.+.. +|. +. ++|+.|+|++|+++++|. +..+++|+.|+|++
T Consensus 233 ~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~------lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 233 HNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ------VPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp TSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS------CCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSS
T ss_pred CCCCCccchhhHHhccCcCcCCEEECCCCCCCc------hhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcC
Confidence 9999976 7777776 699999999999875 666 32 799999999999999875 78899999999999
Q ss_pred CCCcc
Q 041975 276 NNFEK 280 (543)
Q Consensus 276 n~l~~ 280 (543)
|.++.
T Consensus 304 N~l~~ 308 (310)
T 4glp_A 304 NPFLV 308 (310)
T ss_dssp TTTSC
T ss_pred CCCCC
Confidence 99863
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=5.1e-18 Score=172.57 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=95.2
Q ss_pred ccceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCcccccccccccccCc-cccCCcCCcEEeccccccCeec-CCccc
Q 041975 90 NEQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNIEQLWNDVQLEELPS-SIGNLSRLVTLDLRKCLRLKKV-SSSLC 165 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~l-p~~i~ 165 (543)
++++.|++++|.++.+|.. | ++++|++|+|++|++. ..+|. .|.++++|+.+...++..+..+ |..+.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~--------~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--------EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC--------CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC--------CccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 3555555555555555543 3 4555555555555543 22332 3455555544322222233333 33455
Q ss_pred CCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccC-ccccccCC-CCCCC-CCCcEEEccCcCCCCCCCCCCCCc-ccc
Q 041975 166 NLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANE-IAISQVPS-SISCL-NRVELLSFAGCKGRPPQMGLKLPI-LFQ 241 (543)
Q Consensus 166 ~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l-~~L~~L~L~~~~~~~~~~~~~lp~-~~~ 241 (543)
.+++|++|++++|.+....+..+....++..|++.+ +.+..++. .+..+ ..++.|++++|.+.. ++. ...
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~------i~~~~f~ 175 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE------IHNSAFN 175 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE------ECTTSST
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC------CChhhcc
Confidence 555555555555544333333333444445555533 34444443 22333 245555555555443 333 333
Q ss_pred CCCCCeEeccC-CCCCcCCc-cCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccccccCC
Q 041975 242 SQILENLSLIN-CNIIELPE-SLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 242 l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 306 (543)
..+|++|++++ |.++.+|. .+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.++..++.+|
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC
Confidence 34555555543 34444543 245555555555555555555532 24455555555554444444
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2.2e-20 Score=188.65 Aligned_cols=220 Identities=16% Similarity=0.170 Sum_probs=142.4
Q ss_pred CccEEEEecCCCCCCcceeeecCCcccc-cccceEEEECCCCCCCCCCC-CCCCCeeEEEcCCCCcccccccccccccCc
Q 041975 61 RLRFFKFYNSISGENRCKVHHVRSMESL-FNEQRYFHWDGYPLKTLPSK-ISPEHLVSLEMPNSNIEQLWNDVQLEELPS 138 (543)
Q Consensus 61 ~Lr~L~l~~n~~~~~~~~~~~~~~l~~l-~~~Lr~L~l~~~~l~~lp~~-~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~ 138 (543)
.++.++++++.. . +..+..+ .++++.|++++|.+...+.. +.+++|++|++++|.+.. ..+|.
T Consensus 48 ~~~~l~l~~~~~-----~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~-------~~~~~ 112 (336)
T 2ast_B 48 LWQTLDLTGKNL-----H---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV-------STLHG 112 (336)
T ss_dssp TSSEEECTTCBC-----C---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH-------HHHHH
T ss_pred hheeeccccccC-----C---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH-------HHHHH
Confidence 366777766541 1 2233333 12677777777776544443 367778888887777651 12666
Q ss_pred cccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCC--cCCcccCCCCCCceeeccCc-cccc--cCCCCCC
Q 041975 139 SIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLE--KLPEEIGNLGSLKNMVANEI-AISQ--VPSSISC 213 (543)
Q Consensus 139 ~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~--~~p~~l~~l~~L~~L~l~~~-~i~~--lp~~i~~ 213 (543)
.+..+++|++|+|++|......+..+.++++|++|++++|.... .++..++++++|++|++++| .++. ++..+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 67777788888888775555566667777788888888774333 25555667777888888777 6663 5555667
Q ss_pred CC-CCcEEEccCcC--CCCCCCCCCCCc-cccCCCCCeEeccCCC-CCc-CCccCCCCCCCCeEecCCCC-Cc-cCCccc
Q 041975 214 LN-RVELLSFAGCK--GRPPQMGLKLPI-LFQSQILENLSLINCN-IIE-LPESLGQLPSLKYLNLEENN-FE-KIPSNI 285 (543)
Q Consensus 214 l~-~L~~L~L~~~~--~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~l 285 (543)
++ +|+.|++++|. +.. ..++. +..+++|+.|++++|. +++ .+..+..+++|++|++++|. +. .....+
T Consensus 193 l~~~L~~L~l~~~~~~~~~----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQK----SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp SCTTCCEEECCSCGGGSCH----HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred cccCCCEEEeCCCcccCCH----HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 77 78888887774 221 11333 5667778888888887 554 56677777888888888874 32 111246
Q ss_pred cCCCCCCEEecccc
Q 041975 286 KQVSKLSLLILDNW 299 (543)
Q Consensus 286 ~~l~~L~~L~L~~~ 299 (543)
..+++|+.|++++|
T Consensus 269 ~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeccCc
Confidence 67788888888877
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.8e-18 Score=185.98 Aligned_cols=182 Identities=24% Similarity=0.295 Sum_probs=156.7
Q ss_pred ccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 90 NEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 90 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
.+|+.|++++|.++.+|..+ +++|++|+|++|+|+ .+| +.+++|++|+|++| .+..+|. +.+ +
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~---------~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI---------SLP---ELPASLEYLDACDN-RLSTLPE-LPA--S 121 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS---------CCC---CCCTTCCEEECCSS-CCSCCCC-CCT--T
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc---------ccc---cccCCCCEEEccCC-CCCCcch-hhc--C
Confidence 38999999999999999866 488999999999995 566 45799999999999 4555888 665 9
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEe
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLS 249 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~ 249 (543)
|++|++++|.+.+ +|. .+++|+.|++++|.++.+|. .+++|+.|++++|.+.. +|.+. ++|+.|+
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~------lp~l~--~~L~~L~ 186 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF------LPELP--ESLEALD 186 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC------CCCCC--TTCCEEE
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC------cchhh--CCCCEEE
Confidence 9999999988666 776 68999999999999999887 67899999999999876 66643 8999999
Q ss_pred ccCCCCCcCCccCCCCCCC-------CeEecCCCCCccCCccccCCCCCCEEecccccccccCC
Q 041975 250 LINCNIIELPESLGQLPSL-------KYLNLEENNFEKIPSNIKQVSKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 250 Ls~n~l~~lp~~l~~l~~L-------~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 306 (543)
|++|+|+.+|. +.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|+....+|
T Consensus 187 Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 187 VSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 99999999998 665 77 99999999999999999999999999999998766554
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.4e-18 Score=170.36 Aligned_cols=166 Identities=23% Similarity=0.279 Sum_probs=102.7
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSL 170 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 170 (543)
+|+.|++++|.++.++....+++|++|++++|+++ .++. ++.+++|++|++++| .+..+|. +..+++|
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~---------~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---------DIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKL 114 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---------CCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTC
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccC---------CCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCC
Confidence 56666666666655554335556666666666553 2232 555555555555555 2333332 4444445
Q ss_pred CEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEec
Q 041975 171 ESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSL 250 (543)
Q Consensus 171 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~L 250 (543)
++|++++ |.++.+ ..+..+++|+.|++++|.+.. ++.+..+++|+.|++
T Consensus 115 ~~L~L~~------------------------n~i~~~-~~l~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 115 KSLSLEH------------------------NGISDI-NGLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSL 163 (291)
T ss_dssp CEEECTT------------------------SCCCCC-GGGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEEC
T ss_pred CEEECCC------------------------CcCCCC-hhhcCCCCCCEEEccCCcCCc------chhhccCCCCCEEEc
Confidence 5555544 444443 234455556666666665544 444666777788888
Q ss_pred cCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccccc
Q 041975 251 INCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 251 s~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 301 (543)
++|.+++++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+.
T Consensus 164 ~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 164 EDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred cCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 8888877665 7888888888888888888774 78888888888888854
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2e-18 Score=170.99 Aligned_cols=169 Identities=22% Similarity=0.281 Sum_probs=136.8
Q ss_pred ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcE
Q 041975 140 IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVEL 219 (543)
Q Consensus 140 l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 219 (543)
+..+++|+.|++++| .+..++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.++.++. +..+++|+.
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 345677888888876 4555554 77788888888888765543 33 8888888999998888888765 889999999
Q ss_pred EEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccc
Q 041975 220 LSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 220 L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 299 (543)
|++++|.+.. ++.+..+++|+.|++++|+++++ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 117 L~L~~n~i~~------~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 117 LSLEHNGISD------INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp EECTTSCCCC------CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred EECCCCcCCC------ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC
Confidence 9999999776 67788999999999999999998 578999999999999999998876 899999999999999
Q ss_pred cccccCCCCCCCcEEeecCCCCCccccCCcc
Q 041975 300 KRFLSLPELPCGSSVYARHCTSLETLSNLST 330 (543)
Q Consensus 300 ~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~ 330 (543)
. +..+|. +.++++|+.+....+
T Consensus 189 ~-i~~l~~--------l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 189 H-ISDLRA--------LAGLKNLDVLELFSQ 210 (291)
T ss_dssp C-CCBCGG--------GTTCTTCSEEEEEEE
T ss_pred c-CCCChh--------hccCCCCCEEECcCC
Confidence 5 344443 245677777776555
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=8.6e-20 Score=184.25 Aligned_cols=234 Identities=18% Similarity=0.247 Sum_probs=150.8
Q ss_pred ChHHHhCC--CCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCC--CCCCC-CCCCeeEEEcCCCCccc
Q 041975 52 HPSIFTKM--HRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKT--LPSKI-SPEHLVSLEMPNSNIEQ 126 (543)
Q Consensus 52 ~~~~f~~l--~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~--lp~~~-~l~~L~~L~L~~n~l~~ 126 (543)
.+..+..+ ++++.|++.+|. .... +..+..++ +|++|++++|.+.. +|..+ .+++|++|+|++|.++
T Consensus 60 ~~~~~~~~~~~~l~~L~l~~n~-----l~~~-~~~~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~- 131 (336)
T 2ast_B 60 HPDVTGRLLSQGVIAFRCPRSF-----MDQP-LAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS- 131 (336)
T ss_dssp CHHHHHHHHHTTCSEEECTTCE-----ECSC-CCSCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-
T ss_pred CHHHHHhhhhccceEEEcCCcc-----cccc-chhhccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-
Confidence 35667776 788888887775 2222 22344554 78888888887653 55444 6778888888888775
Q ss_pred ccccccccccCccccCCcCCcEEeccccccCe--ecCCcccCCCCCCEEeccCC-CCCCc-CCcccCCCC-CCceeeccC
Q 041975 127 LWNDVQLEELPSSIGNLSRLVTLDLRKCLRLK--KVSSSLCNLKSLESLYLSGC-LKLEK-LPEEIGNLG-SLKNMVANE 201 (543)
Q Consensus 127 l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~-~~~~~-~p~~l~~l~-~L~~L~l~~ 201 (543)
...+..++.+++|++|++++|..+. .++..+.++++|++|++++| .+.+. ++..++.++ +|++|++++
T Consensus 132 -------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 132 -------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp -------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred -------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 4566677778888888888874444 35655677788888888887 44432 455677777 888888888
Q ss_pred cc--c--cccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCC-CCc-CCccCCCCCCCCeEecCC
Q 041975 202 IA--I--SQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCN-IIE-LPESLGQLPSLKYLNLEE 275 (543)
Q Consensus 202 ~~--i--~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~Ls~ 275 (543)
|. + ..++..+..+++|+.|++++|..... ..++.+..+++|++|++++|. +.. ....++.+++|+.|++++
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH---HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 74 3 35566666778888888888873221 113346777888888888884 332 223566778888888888
Q ss_pred CCCccCCccccCC-CCCCEEecccccccccCC
Q 041975 276 NNFEKIPSNIKQV-SKLSLLILDNWKRFLSLP 306 (543)
Q Consensus 276 n~l~~lp~~l~~l-~~L~~L~L~~~~~l~~lp 306 (543)
| +.. ..+..+ ..|+.|++++|......|
T Consensus 282 ~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 282 I-VPD--GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp S-SCT--TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred c-cCH--HHHHHHHhhCcceEEecccCccccC
Confidence 7 321 122222 235555566665544444
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.6e-17 Score=167.29 Aligned_cols=216 Identities=14% Similarity=0.103 Sum_probs=170.5
Q ss_pred CCccEEEEecCCCCCCcceeeec-CCcccccccceEEEECCCCC-CCCCCC-C-CCCCeeE-EEcCCCCccccccccccc
Q 041975 60 HRLRFFKFYNSISGENRCKVHHV-RSMESLFNEQRYFHWDGYPL-KTLPSK-I-SPEHLVS-LEMPNSNIEQLWNDVQLE 134 (543)
Q Consensus 60 ~~Lr~L~l~~n~~~~~~~~~~~~-~~l~~l~~~Lr~L~l~~~~l-~~lp~~-~-~l~~L~~-L~L~~n~l~~l~~~~~l~ 134 (543)
++++.|++++|. .. .+| ..|..++ +|++|++++|.+ +.+|.. | ++++|.+ +.+.+|+++ .
T Consensus 30 ~~l~~L~Ls~N~-----i~-~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~--------~ 94 (350)
T 4ay9_X 30 RNAIELRFVLTK-----LR-VIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL--------Y 94 (350)
T ss_dssp TTCSEEEEESCC-----CS-EECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC--------E
T ss_pred CCCCEEEccCCc-----CC-CcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc--------c
Confidence 589999999996 43 455 4688887 999999999997 557654 4 6777765 667778885 2
Q ss_pred ccCccccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCc-ccCCC-CCCceeeccCccccccCCCC
Q 041975 135 ELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPE-EIGNL-GSLKNMVANEIAISQVPSSI 211 (543)
Q Consensus 135 ~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~-~l~~l-~~L~~L~l~~~~i~~lp~~i 211 (543)
-.|..+..+++|++|++++|. +..+| ..+....++..|++.++..+..+|. .+..+ ..++.|++++|.++.+|...
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred cCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 235678999999999999985 44444 4456677889999988777777665 35555 46899999999999999988
Q ss_pred CCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCC-CCccCCccccCC
Q 041975 212 SCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEEN-NFEKIPSNIKQV 288 (543)
Q Consensus 212 ~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l 288 (543)
....+|+.|++.++..... +|. +.++++|+.|++++|+++.+|.. .+.+|+.|.+.++ +++.+| .+..+
T Consensus 174 f~~~~L~~l~l~~~n~l~~-----i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l 245 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEE-----LPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKL 245 (350)
T ss_dssp STTEEEEEEECTTCTTCCC-----CCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTC
T ss_pred ccccchhHHhhccCCcccC-----CCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhC
Confidence 8889999999987655544 776 78999999999999999999864 3667788876665 677898 58899
Q ss_pred CCCCEEecccc
Q 041975 289 SKLSLLILDNW 299 (543)
Q Consensus 289 ~~L~~L~L~~~ 299 (543)
++|+.+++.++
T Consensus 246 ~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 VALMEASLTYP 256 (350)
T ss_dssp CSCCEEECSCH
T ss_pred cChhhCcCCCC
Confidence 99999999765
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=9.4e-20 Score=192.16 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=176.7
Q ss_pred cEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCC--CCCC-CC
Q 041975 35 AIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTL--PSKI-SP 111 (543)
Q Consensus 35 ~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l--p~~~-~l 111 (543)
.++.+.+..+.+....+ ...|..+++|+.|++++|.+... ....++..+..++ +|++|++++|.+... ...+ .+
T Consensus 4 ~l~~L~Ls~~~l~~~~~-~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARW-AELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESCCCCHHHH-HHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTT
T ss_pred cceehhhhhcccCchhH-HHHHhhcCCccEEEccCCCCCHH-HHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHH
Confidence 45666666655543322 34488899999999999863110 1113455666676 899999999987531 1111 23
Q ss_pred C----CeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCC----c-ccCCCCCCEEeccCCCCCC
Q 041975 112 E----HLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSS----S-LCNLKSLESLYLSGCLKLE 182 (543)
Q Consensus 112 ~----~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----~-i~~l~~L~~L~Ls~~~~~~ 182 (543)
+ +|++|+|++|+++.. ....++..+..+++|++|+|++|......+. . ....++|++|++++|.+..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~----~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGA----GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGG----GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred hhCCCceeEEEccCCCCCHH----HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 3 799999999988621 1125678888999999999999864322222 1 2235689999999987665
Q ss_pred c----CCcccCCCCCCceeeccCcccccc-CCCC----C-CCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEecc
Q 041975 183 K----LPEEIGNLGSLKNMVANEIAISQV-PSSI----S-CLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLI 251 (543)
Q Consensus 183 ~----~p~~l~~l~~L~~L~l~~~~i~~l-p~~i----~-~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls 251 (543)
. ++..+..+++|++|++++|.++.. +..+ . ..++|+.|++++|.+..... ..++. +..+++|++|+++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC-RDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH-HHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH-HHHHHHHHhCCCccEEecc
Confidence 3 355567788999999999987632 1112 1 35689999999997654200 00233 5677899999999
Q ss_pred CCCCCcC------CccCCCCCCCCeEecCCCCCcc-----CCccccCCCCCCEEecccccc
Q 041975 252 NCNIIEL------PESLGQLPSLKYLNLEENNFEK-----IPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 252 ~n~l~~l------p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~~~~ 301 (543)
+|.+++. +.....+++|++|++++|.++. ++..+..+++|+.|++++|..
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 9988762 3334468899999999998885 677788889999999999864
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=5.1e-18 Score=184.24 Aligned_cols=175 Identities=22% Similarity=0.238 Sum_probs=135.7
Q ss_pred cccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcc
Q 041975 85 MESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSL 164 (543)
Q Consensus 85 l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i 164 (543)
+..++ +|+.|++++|.+..+|....+++|++|+|++|+++ .++. +..+++|+.|+|++| .+..+| .+
T Consensus 39 ~~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~---------~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l 105 (605)
T 1m9s_A 39 QNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---------DIKP-LTNLKNLGWLFLDEN-KIKDLS-SL 105 (605)
T ss_dssp HHHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC---------CCGG-GGGCTTCCEEECCSS-CCCCCT-TS
T ss_pred hhcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC---------CChh-hccCCCCCEEECcCC-CCCCCh-hh
Confidence 45665 88999999998888886447889999999998885 3444 788888999999888 455555 47
Q ss_pred cCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCC
Q 041975 165 CNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQI 244 (543)
Q Consensus 165 ~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~ 244 (543)
..+++|++|+|++|.+.+ + +.+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.. ++.+..+++
T Consensus 106 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~------~~~l~~l~~ 176 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD------IVPLAGLTK 176 (605)
T ss_dssp TTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC------CGGGTTCTT
T ss_pred ccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC------chhhccCCC
Confidence 888888888888877554 3 3577888888888888888877 567788888888888887765 334777888
Q ss_pred CCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCC
Q 041975 245 LENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIP 282 (543)
Q Consensus 245 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 282 (543)
|+.|+|++|.++++| .+..+++|+.|+|++|.+...|
T Consensus 177 L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 177 LQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 888888888888775 5777888888888888777555
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.5e-17 Score=178.80 Aligned_cols=173 Identities=19% Similarity=0.231 Sum_probs=95.7
Q ss_pred hCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCccccccccccccc
Q 041975 57 TKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEEL 136 (543)
Q Consensus 57 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~l 136 (543)
..+++|+.|++++|.+ ..++ .+..++ +|+.|++++|.+..++....+++|++|+|++|.++ .+
T Consensus 40 ~~L~~L~~L~l~~n~i------~~l~-~l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~---------~l 102 (605)
T 1m9s_A 40 NELNSIDQIIANNSDI------KSVQ-GIQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK---------DL 102 (605)
T ss_dssp HHHTTCCCCBCTTCCC------CCCT-TGGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC---------CC
T ss_pred hcCCCCCEEECcCCCC------CCCh-HHccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCC---------CC
Confidence 4455566666655531 1122 355554 66666666666665555225666666666666653 22
Q ss_pred CccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCC
Q 041975 137 PSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNR 216 (543)
Q Consensus 137 p~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~ 216 (543)
| .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+.+. ..++.+++|+.|+|++|.+..++. +..+++
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~ 176 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTK 176 (605)
T ss_dssp T-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred h-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCC
Confidence 2 45566666666666653 33333 255566666666666554432 345566666666666666665544 556666
Q ss_pred CcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcC
Q 041975 217 VELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIEL 258 (543)
Q Consensus 217 L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~l 258 (543)
|+.|+|++|.+.. ++.+..+++|+.|+|++|.+...
T Consensus 177 L~~L~Ls~N~i~~------l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 177 LQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCEEECCSSCCCB------CGGGTTCTTCSEEECCSEEEECC
T ss_pred CCEEECcCCCCCC------ChHHccCCCCCEEEccCCcCcCC
Confidence 6666666665543 44455566666666666655553
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=4.5e-17 Score=152.74 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=65.0
Q ss_pred eEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCC-cccCCCCCC
Q 041975 93 RYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSS-SLCNLKSLE 171 (543)
Q Consensus 93 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~ 171 (543)
+.++.+++.++.+|..+ .++|++|++++|+++ ...+..++.+++|++|++++|. +..+|. .+.++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK--------SLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLT 79 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC--------CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC--------cCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcC
Confidence 44555556666665443 346666666666664 1122234566666666666653 333332 345566666
Q ss_pred EEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCCCCcEEEccCcCC
Q 041975 172 SLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLNRVELLSFAGCKG 227 (543)
Q Consensus 172 ~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~ 227 (543)
+|++++|.+.+..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|.+
T Consensus 80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 666666554433333345555566666655555544432 34444444444444443
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=8.8e-20 Score=188.12 Aligned_cols=244 Identities=17% Similarity=0.128 Sum_probs=176.1
Q ss_pred eecCCcccccccceEEEECCCCCCC-----CCCCC-CCCCeeEEEcCCCCcccccccc--cccccCccccCCcCCcEEec
Q 041975 80 HHVRSMESLFNEQRYFHWDGYPLKT-----LPSKI-SPEHLVSLEMPNSNIEQLWNDV--QLEELPSSIGNLSRLVTLDL 151 (543)
Q Consensus 80 ~~~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l~~~~--~l~~lp~~l~~l~~L~~L~L 151 (543)
.++..+..++ +|++|++++|.++. ++..+ .+++|++|+|++|.+..+.... .+..+...+..+++|++|+|
T Consensus 23 ~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3455666776 89999999998864 33444 7899999999998665332110 11223334578999999999
Q ss_pred cccccCe----ecCCcccCCCCCCEEeccCCCCCCcC----CcccCCC---------CCCceeeccCcccc--ccC---C
Q 041975 152 RKCLRLK----KVSSSLCNLKSLESLYLSGCLKLEKL----PEEIGNL---------GSLKNMVANEIAIS--QVP---S 209 (543)
Q Consensus 152 ~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~~~~~----p~~l~~l---------~~L~~L~l~~~~i~--~lp---~ 209 (543)
++|.... .+|..+.++++|++|+|++|.+.... +..+..+ ++|++|++++|.++ .++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9996554 37777889999999999999875332 2333344 89999999999986 344 4
Q ss_pred CCCCCCCCcEEEccCcCCCCCCCCCCCC-ccccCCCCCeEeccCCCCC-----cCCccCCCCCCCCeEecCCCCCcc---
Q 041975 210 SISCLNRVELLSFAGCKGRPPQMGLKLP-ILFQSQILENLSLINCNII-----ELPESLGQLPSLKYLNLEENNFEK--- 280 (543)
Q Consensus 210 ~i~~l~~L~~L~L~~~~~~~~~~~~~lp-~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~--- 280 (543)
.+..+++|+.|++++|.+........++ .+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 6678899999999999865210000134 4778899999999999995 388889999999999999999974
Q ss_pred --CCcccc--CCCCCCEEecccccccc----cCCCCCCCcEEeecCCCCCccccCCcc
Q 041975 281 --IPSNIK--QVSKLSLLILDNWKRFL----SLPELPCGSSVYARHCTSLETLSNLST 330 (543)
Q Consensus 281 --lp~~l~--~l~~L~~L~L~~~~~l~----~lp~lp~~~~l~~~~c~~L~~l~~~~~ 330 (543)
+|..+. .+++|+.|+|++|.... .+|. .+ ..+|++|+.|....+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---~l---~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---VI---DEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---HH---HHHCTTCCEEECTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---HH---HhcCCCceEEEccCC
Confidence 466664 48999999999997544 2432 11 134566666665544
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.1e-17 Score=163.01 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=99.9
Q ss_pred ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcE
Q 041975 140 IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVEL 219 (543)
Q Consensus 140 l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 219 (543)
+..+++|++|++++| .+..+| .+..+++|++|++++|.+.+ ++. ++.+++|++|++++|.++.+|.... ++|+.
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 445555666666655 344454 35556666666666655433 333 6666666666666666666654333 67777
Q ss_pred EEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCccccCCCCCCEEecccc
Q 041975 220 LSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 220 L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 299 (543)
|++++|.+.. ++.+..+++|+.|++++|++++++ .++.+++|+.|++++|.++.+ ..+..+++|+.|++++|
T Consensus 111 L~L~~N~l~~------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 111 LFLDNNELRD------TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EECCSSCCSB------SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred EEccCCccCC------ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 7777776654 455777778888888888888776 677788888888888888877 56778888888888888
Q ss_pred cc
Q 041975 300 KR 301 (543)
Q Consensus 300 ~~ 301 (543)
+.
T Consensus 183 ~~ 184 (263)
T 1xeu_A 183 KC 184 (263)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 98
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=9.3e-20 Score=192.19 Aligned_cols=236 Identities=19% Similarity=0.145 Sum_probs=122.4
Q ss_pred ccEEEEEeecCCceeec--cChHHHhCCCCccEEEEecCCCCCCcceeeecCCccc-cc---ccceEEEECCCCCC----
Q 041975 34 EAIEGISLDMSKVKEIC--MHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMES-LF---NEQRYFHWDGYPLK---- 103 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~--i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~-l~---~~Lr~L~l~~~~l~---- 103 (543)
..++.+.+..+.+.... .-+.++..+++|++|++++|. .....+..+.. ++ .+|++|++++|.++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 45667777766654221 114567778888888888875 22222222211 21 15888888888776
Q ss_pred -CCCCCC-CCCCeeEEEcCCCCcccccccccccccCcc-ccCCcCCcEEeccccccCe----ecCCcccCCCCCCEEecc
Q 041975 104 -TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSS-IGNLSRLVTLDLRKCLRLK----KVSSSLCNLKSLESLYLS 176 (543)
Q Consensus 104 -~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls 176 (543)
.++..+ .+++|++|++++|.++... ...+... ....++|++|++++|.... .++..+..+++|++|+++
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAG----LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHH----HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHH----HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 345444 6778888888888775210 0111111 1224456666666663332 233444455666666666
Q ss_pred CCCCCCcCCcccC-----CCCCCceeeccCccccc-----cCCCCCCCCCCcEEEccCcCCCCCCCCCCC-Cc-cccCCC
Q 041975 177 GCLKLEKLPEEIG-----NLGSLKNMVANEIAISQ-----VPSSISCLNRVELLSFAGCKGRPPQMGLKL-PI-LFQSQI 244 (543)
Q Consensus 177 ~~~~~~~~p~~l~-----~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l-p~-~~~l~~ 244 (543)
+|.+....+..+. ..++|++|++++|.++. ++..+..+++|+.|++++|.+..... ..+ +. ...+++
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM-AELCPGLLHPSSR 257 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH-HHHHHHHhcCCCC
Confidence 6553322222221 23456666666665553 34445555666666666655322100 000 11 123455
Q ss_pred CCeEeccCCCCCc-----CCccCCCCCCCCeEecCCCCCc
Q 041975 245 LENLSLINCNIIE-----LPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 245 L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
|++|++++|.++. ++..+..+++|++|++++|.+.
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 6666666665554 4444555555666666665554
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.5e-19 Score=184.82 Aligned_cols=239 Identities=14% Similarity=0.095 Sum_probs=142.7
Q ss_pred hHHHhCCCCccEEEEecCCCCCCcceeeec----CCcccccccceEEEECCCCCCCCCC-CC-C-----CCCeeEEEcCC
Q 041975 53 PSIFTKMHRLRFFKFYNSISGENRCKVHHV----RSMESLFNEQRYFHWDGYPLKTLPS-KI-S-----PEHLVSLEMPN 121 (543)
Q Consensus 53 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~----~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~-----l~~L~~L~L~~ 121 (543)
+..+...++|+.|++++|.+ ....+ ..+..++.+|++|++++|.++.... .+ . .++|++|+|++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNL-----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCG-----GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHhCCCCceEEEccCCCC-----ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 44455555688888888762 22222 4455554478888888887765432 22 2 27788888888
Q ss_pred CCcccccccccccccCccccCC-cCCcEEeccccccCeecCCc----ccC-CCCCCEEeccCCCCCCc----CCcccCCC
Q 041975 122 SNIEQLWNDVQLEELPSSIGNL-SRLVTLDLRKCLRLKKVSSS----LCN-LKSLESLYLSGCLKLEK----LPEEIGNL 191 (543)
Q Consensus 122 n~l~~l~~~~~l~~lp~~l~~l-~~L~~L~L~~~~~l~~lp~~----i~~-l~~L~~L~Ls~~~~~~~----~p~~l~~l 191 (543)
|+++.... ..+...+..+ ++|++|+|++|......+.. +.. .++|++|++++|.+... ++..+..+
T Consensus 90 n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 90 NFLSYKSS----DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp SCGGGSCH----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred CcCChHHH----HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 88752100 1111224444 78888888887543322222 233 25788888888765532 33334444
Q ss_pred C-CCceeeccCccccccCC-----CCCCC-CCCcEEEccCcCCCCCCCCCCCCc-ccc-CCCCCeEeccCCCCCcC----
Q 041975 192 G-SLKNMVANEIAISQVPS-----SISCL-NRVELLSFAGCKGRPPQMGLKLPI-LFQ-SQILENLSLINCNIIEL---- 258 (543)
Q Consensus 192 ~-~L~~L~l~~~~i~~lp~-----~i~~l-~~L~~L~L~~~~~~~~~~~~~lp~-~~~-l~~L~~L~Ls~n~l~~l---- 258 (543)
+ +|++|++++|.++.... .+..+ ++|+.|++++|.+..... ..++. +.. .++|++|+|++|.+++.
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-AELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-HHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 4 78888888887764432 34445 478888888877554200 00222 333 34788888888877763
Q ss_pred -CccCCCCCCCCeEecCCCCCc--------cCCccccCCCCCCEEecccccc
Q 041975 259 -PESLGQLPSLKYLNLEENNFE--------KIPSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 259 -p~~l~~l~~L~~L~Ls~n~l~--------~lp~~l~~l~~L~~L~L~~~~~ 301 (543)
...+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+.
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 234567778888888888733 3344566777788888888753
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1e-18 Score=178.64 Aligned_cols=233 Identities=12% Similarity=0.136 Sum_probs=167.6
Q ss_pred cEEEEEeecCCceeeccCh----HHHhCCC-CccEEEEecCCCCCCcceeeecCCcccc----cccceEEEECCCCCCCC
Q 041975 35 AIEGISLDMSKVKEICMHP----SIFTKMH-RLRFFKFYNSISGENRCKVHHVRSMESL----FNEQRYFHWDGYPLKTL 105 (543)
Q Consensus 35 ~v~~i~L~~s~~~~~~i~~----~~f~~l~-~Lr~L~l~~n~~~~~~~~~~~~~~l~~l----~~~Lr~L~l~~~~l~~l 105 (543)
.++.+.|..+.+. .... .+|.+++ +|+.|++++|. .....+..+..+ +++|++|++++|.++..
T Consensus 23 ~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 23 GVTSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNS-----LGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TCCEEECTTSCGG--GSCHHHHHHHHHTCCTTCCEEECCSSC-----GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CceEEEccCCCCC--hHHHHHHHHHHHhCCCceeEEECcCCC-----CCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 4677666655553 4444 7899999 99999999997 333334344443 24999999999999765
Q ss_pred CCC-----C-CC-CCeeEEEcCCCCcccccccccccccCccccC-CcCCcEEeccccccCe----ecCCcccCCC-CCCE
Q 041975 106 PSK-----I-SP-EHLVSLEMPNSNIEQLWNDVQLEELPSSIGN-LSRLVTLDLRKCLRLK----KVSSSLCNLK-SLES 172 (543)
Q Consensus 106 p~~-----~-~l-~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~-l~~L~~L~L~~~~~l~----~lp~~i~~l~-~L~~ 172 (543)
+.. + .+ ++|++|+|++|+++.... ..+...+.. .++|++|+|++|.... .++..+..++ +|++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSS----SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCH----HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHH----HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 542 2 34 799999999999963211 122233445 3699999999995543 3445555665 9999
Q ss_pred EeccCCCCCCcCCcc----cCCC-CCCceeeccCccccc-----cCCCCCCC-CCCcEEEccCcCCCCCCCCCCCCc-cc
Q 041975 173 LYLSGCLKLEKLPEE----IGNL-GSLKNMVANEIAISQ-----VPSSISCL-NRVELLSFAGCKGRPPQMGLKLPI-LF 240 (543)
Q Consensus 173 L~Ls~~~~~~~~p~~----l~~l-~~L~~L~l~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~~~~~~~~~lp~-~~ 240 (543)
|++++|.+.+..+.. +..+ ++|++|++++|.++. ++..+..+ ++|+.|++++|.+..... ..+.. +.
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~~~ 250 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL-ENLKLLKD 250 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH-HHHHHTTT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH-HHHHHHHh
Confidence 999999876665543 3444 699999999999986 66666664 599999999998766310 00112 56
Q ss_pred cCCCCCeEeccCCCCCc--------CCccCCCCCCCCeEecCCCCCc
Q 041975 241 QSQILENLSLINCNIIE--------LPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 241 ~l~~L~~L~Ls~n~l~~--------lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
.+++|+.|++++|.+.+ ++..+..+++|+.|++++|.+.
T Consensus 251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 78899999999998433 5567888999999999999987
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.8e-16 Score=148.66 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=123.6
Q ss_pred cccceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCcccccccccccccCc-cccCCcCCcEEeccccccCeecC-Ccc
Q 041975 89 FNEQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNIEQLWNDVQLEELPS-SIGNLSRLVTLDLRKCLRLKKVS-SSL 164 (543)
Q Consensus 89 ~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp-~~i 164 (543)
+++|++|++++|.++.++.. + .+++|++|++++|+++ .+|. .+..+++|++|+|++|. +..+| ..+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---------SLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF 96 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------ccChhhcCCCCCcCEEECCCCc-CCccCHhHh
Confidence 34899999999999888875 3 7899999999999985 4443 56889999999999985 44555 447
Q ss_pred cCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCCCCcEEEccCcCCCCCCCCCCCCccccCC
Q 041975 165 CNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQ 243 (543)
Q Consensus 165 ~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~ 243 (543)
.++++|++|++++|.+.+..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|.... .++
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----------~~~ 165 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----------TCP 165 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----------CTT
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----------CCC
Confidence 8899999999999887766666688999999999999999988765 6778888888888886543 244
Q ss_pred CCCeEeccCCCCCc-CCccCCCCCC
Q 041975 244 ILENLSLINCNIIE-LPESLGQLPS 267 (543)
Q Consensus 244 ~L~~L~Ls~n~l~~-lp~~l~~l~~ 267 (543)
+|+.|+++.|++++ +|..++.++.
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CHHHHHHHHHhCCceeeccCccccC
Confidence 56777777776665 6666655443
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=6.8e-17 Score=150.26 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=67.8
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSL 170 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 170 (543)
+|+.|++++|.++.+|....+++|++|++++|.++ .+ +.+..+++|++|++++|......|..+..+++|
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~---------~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT---------NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS---------CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCC---------cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 44444444444444442124444444444444332 11 134444445555554443333334444444555
Q ss_pred CEEeccCCCCCCcCCcccCCCCCCceeeccCcc-ccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEe
Q 041975 171 ESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIA-ISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLS 249 (543)
Q Consensus 171 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~ 249 (543)
++|++++|.+.+..|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|.+.. ++.+..+++|+.|+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~------~~~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD------YRGIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC------CTTGGGCSSCCEEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC------hHHhccCCCCCEEE
Confidence 555555544444444444445555555555554 44443 34445555555555554433 33444555555555
Q ss_pred ccCCCC
Q 041975 250 LINCNI 255 (543)
Q Consensus 250 Ls~n~l 255 (543)
+++|++
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 555544
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8e-17 Score=149.79 Aligned_cols=150 Identities=16% Similarity=0.188 Sum_probs=74.1
Q ss_pred CCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 111 PEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 111 l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
+++|++|++++|.++ .+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.+..|..++.
T Consensus 43 l~~L~~L~l~~n~i~---------~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 43 MNSLTYITLANINVT---------DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHTCCEEEEESSCCS---------CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred cCCccEEeccCCCcc---------ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcC
Confidence 445555555555542 333 3445555555555555 232222 3445555555555555544444445555
Q ss_pred CCCCceeeccCccccc-cCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCccCCCCCCCC
Q 041975 191 LGSLKNMVANEIAISQ-VPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPESLGQLPSLK 269 (543)
Q Consensus 191 l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 269 (543)
+++|++|++++|.++. .|..+..+++|+.|++++|..... +|.+..+++|+.|++++|.+++++ .+..+++|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-----IMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN 184 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----CGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-----cHhhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence 5555555555555552 334445555555555555542221 344555555555555555555544 445555555
Q ss_pred eEecCCCCC
Q 041975 270 YLNLEENNF 278 (543)
Q Consensus 270 ~L~Ls~n~l 278 (543)
.|++++|++
T Consensus 185 ~L~l~~N~i 193 (197)
T 4ezg_A 185 QLYAFSQTI 193 (197)
T ss_dssp EEEECBC--
T ss_pred EEEeeCccc
Confidence 555555544
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.1e-17 Score=159.89 Aligned_cols=170 Identities=20% Similarity=0.226 Sum_probs=112.5
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSL 170 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 170 (543)
++..++++++.++.++....+++|++|++++|.++ .+| .++.+++|++|+|++| .+..+|. +.++++|
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~---------~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L 87 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---------SLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC---------CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSC
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc---------cch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCC
Confidence 44555555555555552225566666666666553 333 4555666666666665 3444444 5666666
Q ss_pred CEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEec
Q 041975 171 ESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLSL 250 (543)
Q Consensus 171 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~L 250 (543)
++|++++|.+.+ +|.. .. ++|+.|++++|.++.++ .+..+++|+.|++++|.+.. ++.+..+++|+.|++
T Consensus 88 ~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~------~~~l~~l~~L~~L~L 157 (263)
T 1xeu_A 88 EELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS------IVMLGFLSKLEVLDL 157 (263)
T ss_dssp CEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB------CGGGGGCTTCCEEEC
T ss_pred CEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC------ChHHccCCCCCEEEC
Confidence 666666655433 3332 22 66777777777777664 46777788888888877655 556778888899999
Q ss_pred cCCCCCcCCccCCCCCCCCeEecCCCCCccCCc
Q 041975 251 INCNIIELPESLGQLPSLKYLNLEENNFEKIPS 283 (543)
Q Consensus 251 s~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 283 (543)
++|.++++ ..+..+++|+.|++++|.+...|.
T Consensus 158 ~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 158 HGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 99988888 678899999999999999887664
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=2.6e-16 Score=160.58 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=102.9
Q ss_pred ceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccC-cccc-CCcCCcEEeccccccCeecCCcccCCCC
Q 041975 92 QRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELP-SSIG-NLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 92 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp-~~l~-~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
-+.++++++.++.+|..+ ...+++|+|++|+|+ .++ ..+. .+++|++|+|++|......+..+.++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~---------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS---------RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC---------EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCC---------ccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 467888888888888654 345788888888875 333 3344 7778888888877444333455777777
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCcccccc-CCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeE
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQV-PSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENL 248 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L 248 (543)
|++|+|++|.+....+..+..+++|+.|++++|.+..+ |..+..+++|+.|+|++|.
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~---------------------- 147 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ---------------------- 147 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----------------------
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc----------------------
Confidence 77777777765544444566677777777777766654 3345555555555555544
Q ss_pred eccCCCCCcCCccC----CCCCCCCeEecCCCCCccCC-ccccCCCC--CCEEeccccc
Q 041975 249 SLINCNIIELPESL----GQLPSLKYLNLEENNFEKIP-SNIKQVSK--LSLLILDNWK 300 (543)
Q Consensus 249 ~Ls~n~l~~lp~~l----~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~--L~~L~L~~~~ 300 (543)
++.+|..+ ..+++|+.|+|++|+++.+| ..+..++. |+.|+|++|+
T Consensus 148 ------l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 148 ------ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ------CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ------CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 44444332 34555555555555555555 23444444 2555665554
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.2e-19 Score=193.81 Aligned_cols=174 Identities=18% Similarity=0.211 Sum_probs=98.1
Q ss_pred CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccc-------------cCeecCCcccCCCCCCEEe-c
Q 041975 110 SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCL-------------RLKKVSSSLCNLKSLESLY-L 175 (543)
Q Consensus 110 ~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~-------------~l~~lp~~i~~l~~L~~L~-L 175 (543)
..++|+.|+|++|++ ..+|.+++.+++|+.|++++|. ..+..|..++++++|+.|+ +
T Consensus 347 ~~~~L~~L~Ls~n~L---------~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 347 TDEQLFRCELSVEKS---------TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp TTTTSSSCCCCHHHH---------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred cCccceeccCChhhH---------HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 345566666666655 3556666666666666665442 2233444455555555555 3
Q ss_pred cCCCCCCcCCc------ccCC--CCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCC
Q 041975 176 SGCLKLEKLPE------EIGN--LGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILE 246 (543)
Q Consensus 176 s~~~~~~~~p~------~l~~--l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~ 246 (543)
+.|. ...++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.+.. +|. ++.+++|+
T Consensus 418 ~~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~------lp~~~~~l~~L~ 489 (567)
T 1dce_A 418 RAAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA------LPPALAALRCLE 489 (567)
T ss_dssp GHHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC------CCGGGGGCTTCC
T ss_pred hhcc-cchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccc------cchhhhcCCCCC
Confidence 3221 000000 0000 1135666666666666665 6666666666666666553 555 66666666
Q ss_pred eEeccCCCCCcCCccCCCCCCCCeEecCCCCCccC--CccccCCCCCCEEecccccc
Q 041975 247 NLSLINCNIIELPESLGQLPSLKYLNLEENNFEKI--PSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 247 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~~~~ 301 (543)
.|+|++|+++++| .++.+++|+.|+|++|+++.+ |..++.+++|+.|+|++|+.
T Consensus 490 ~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 490 VLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp EEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred EEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 6666666666666 566666666666666666655 56666666666666666643
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=9.7e-16 Score=146.02 Aligned_cols=147 Identities=22% Similarity=0.282 Sum_probs=104.8
Q ss_pred CcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCCCCcEEEccC
Q 041975 146 LVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLNRVELLSFAG 224 (543)
Q Consensus 146 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~ 224 (543)
.+.++.+++ .+..+|..+. ++|++|++++|.+.+..|..++.+++|++|++++|.++.+|.. +..+++|+.|++++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445666554 5556665443 6677777777666666666677777777777777777766643 46677777777777
Q ss_pred cCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCc-cccCCCCCCEEecccccc
Q 041975 225 CKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPS-NIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 225 ~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~ 301 (543)
|.+.. ++. +..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++.+|. .+..+++|+.|++++|+.
T Consensus 98 N~l~~------l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 98 NQLTV------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SCCCC------CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcCCc------cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 77655 433 567778888888888888888888888888888888888887774 477788888888888854
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1.5e-15 Score=144.80 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=101.5
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC-CcccCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKS 169 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~ 169 (543)
..+.++.+++.++.+|..+. ++|++|+|++|+++ ...|..+..+++|++|+|++|. +..+| ..+..+++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~--------~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT--------KLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQ 89 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC--------ccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCC
Confidence 56778888888888887553 77888888888886 3345667778888888888774 44554 33567777
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeEe
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENLS 249 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~ 249 (543)
|++|+|++|.+.+..+..+..+++|+.|++++|.++.+|..+..+ ++|+.|+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l----------------------------~~L~~L~ 141 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL----------------------------THLTHLA 141 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGC----------------------------TTCSEEE
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccC----------------------------CCCCEEE
Confidence 777777776655444444566666666666666666655554444 4555555
Q ss_pred ccCCCCCcCC-ccCCCCCCCCeEecCCCCCc
Q 041975 250 LINCNIIELP-ESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 250 Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~ 279 (543)
|++|+++.+| ..+..+++|+.|+|++|.+.
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5555566644 34667778888888888776
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=5.3e-16 Score=158.31 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=93.0
Q ss_pred CCEEeccCCCCCCcCCcccC-CCCCCceeeccCccccccC-CCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCC
Q 041975 170 LESLYLSGCLKLEKLPEEIG-NLGSLKNMVANEIAISQVP-SSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQIL 245 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~-~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L 245 (543)
++.|+|++|.+.+..+..+. ++++|+.|++++|.++.++ ..+..+++|+.|+|++|.+.. ++. +..+++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L 114 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT------LDEFLFSDLQAL 114 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE------ECTTTTTTCTTC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc------CCHHHhCCCcCC
Confidence 44444444433333233333 4444555555555554443 234555555555555555443 222 5667778
Q ss_pred CeEeccCCCCCcC-CccCCCCCCCCeEecCCCCCccCCccc----cCCCCCCEEecccccccccCCCCCCCcEEeecCCC
Q 041975 246 ENLSLINCNIIEL-PESLGQLPSLKYLNLEENNFEKIPSNI----KQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCT 320 (543)
Q Consensus 246 ~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~ 320 (543)
+.|+|++|+++.+ |..+..+++|+.|+|++|+++.+|..+ ..+++|+.|+|++|+. ..+|. . .+..++
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~---~---~~~~l~ 187 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPL---T---DLQKLP 187 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CCCCH---H---HHHHSC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-CccCH---H---Hhhhcc
Confidence 8888888888884 678999999999999999999999765 5799999999999953 44441 1 112233
Q ss_pred C--CccccCCcccccC
Q 041975 321 S--LETLSNLSTLFKP 334 (543)
Q Consensus 321 ~--L~~l~~~~~~~~~ 334 (543)
. ++.+....|.+.+
T Consensus 188 ~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 188 AWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHTTEECCSSCEEC
T ss_pred HhhcceEEecCCCccC
Confidence 3 3566666665554
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=2.7e-15 Score=142.03 Aligned_cols=77 Identities=21% Similarity=0.369 Sum_probs=38.1
Q ss_pred eEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccC-ccccCCcCCcEEeccccccCeecCCcccCCCCCC
Q 041975 93 RYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELP-SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLE 171 (543)
Q Consensus 93 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 171 (543)
+.++++++.++.+|..+. ++|++|+|++|+|+ .+| ..+..+++|++|+|++|......|..+.++++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~---------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK---------VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC---------EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC---------CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 455666666666665432 45666666666553 222 2445555555555555533333344444444444
Q ss_pred EEeccCCC
Q 041975 172 SLYLSGCL 179 (543)
Q Consensus 172 ~L~Ls~~~ 179 (543)
+|+|++|.
T Consensus 84 ~L~Ls~N~ 91 (220)
T 2v9t_B 84 SLVLYGNK 91 (220)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 44444443
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=3.1e-15 Score=141.56 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=120.5
Q ss_pred eEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCC
Q 041975 115 VSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSL 194 (543)
Q Consensus 115 ~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L 194 (543)
+.++++++.++ .+|..+. ++|+.|+|++|......+..+..+++|++|+|++|.+.+..|..+.++++|
T Consensus 14 ~~v~c~~~~l~---------~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLT---------EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTSCCS---------SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred CEEEcCCCCcC---------cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 56788888774 6666554 689999999885444444568889999999999988877778889999999
Q ss_pred ceeeccCccccccCCC-CCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCc-cCCCCCCCCeE
Q 041975 195 KNMVANEIAISQVPSS-ISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPE-SLGQLPSLKYL 271 (543)
Q Consensus 195 ~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L 271 (543)
++|++++|.++.+|.. +..+++|+.|++++|.+... .|. +..+++|+.|+|++|+++.++. .+..+++|+.|
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL-----RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe-----CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 9999999999988865 57789999999999987763 233 7888999999999999998654 58889999999
Q ss_pred ecCCCCCc
Q 041975 272 NLEENNFE 279 (543)
Q Consensus 272 ~Ls~n~l~ 279 (543)
+|++|.+.
T Consensus 158 ~L~~N~~~ 165 (220)
T 2v9t_B 158 HLAQNPFI 165 (220)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCcC
Confidence 99999876
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=3.4e-15 Score=141.34 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=102.9
Q ss_pred ceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCccccccccccccc-C-ccccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 92 QRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEEL-P-SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 92 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~l-p-~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
-+.++++++.++.+|..+ ...+++|+|++|+++ .+ | ..++.+++|++|+|++|......+..+.++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~---------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFT---------VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC---------EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCC---------ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 457888888888888754 345678888888875 33 2 34677888888888877544444446777777
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCcccccc-CCCCCCCCCCcEEEccCcCCCCCCCCCCCCccccCCCCCeE
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQV-PSSISCLNRVELLSFAGCKGRPPQMGLKLPILFQSQILENL 248 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L 248 (543)
|++|++++|.+.+..+..++.+++|++|++++|.++.+ |.. +..+++|+.|
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------------~~~l~~L~~L 134 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS----------------------------FIGLSSVRLL 134 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS----------------------------STTCTTCSEE
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH----------------------------cCCCccCCEE
Confidence 77777777776655555566677777777776666654 233 3445556666
Q ss_pred eccCCCCCcC-CccCCCCCCCCeEecCCCCCc
Q 041975 249 SLINCNIIEL-PESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 249 ~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~ 279 (543)
+|++|+++++ |..+..+++|+.|+|++|.+.
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666666664 667778888888888888776
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=4.6e-15 Score=140.41 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=99.9
Q ss_pred EEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCC-cccCCCCCCceeeccCccccccCC-CCCCCCCCcEEEccCc
Q 041975 148 TLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLP-EEIGNLGSLKNMVANEIAISQVPS-SISCLNRVELLSFAGC 225 (543)
Q Consensus 148 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~ 225 (543)
.+++++| .++.+|..+. ..+++|++++|.+.+..| ..++.+++|+.|++++|.++.++. .+..+++|+.|++++|
T Consensus 15 ~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4445443 3334444332 234555555554443322 235556666666666666665544 5666777777777777
Q ss_pred CCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcC-CccCCCCCCCCeEecCCCCCccC-CccccCCCCCCEEecccccc
Q 041975 226 KGRPPQMGLKLPI--LFQSQILENLSLINCNIIEL-PESLGQLPSLKYLNLEENNFEKI-PSNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 226 ~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~ 301 (543)
.+.. ++. +..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|++++|+.
T Consensus 92 ~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 92 RLEN------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCC------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ccCc------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 7655 333 77788899999999999984 78899999999999999999977 67889999999999999964
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.4e-18 Score=187.43 Aligned_cols=201 Identities=17% Similarity=0.118 Sum_probs=158.0
Q ss_pred ccccccceEEEECCCCCCCCCCCC-CCCCeeEEEcCCCCc-cccc---c-cccccccCccccCCcCCcEEe-ccccccCe
Q 041975 86 ESLFNEQRYFHWDGYPLKTLPSKI-SPEHLVSLEMPNSNI-EQLW---N-DVQLEELPSSIGNLSRLVTLD-LRKCLRLK 158 (543)
Q Consensus 86 ~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l-~~l~---~-~~~l~~lp~~l~~l~~L~~L~-L~~~~~l~ 158 (543)
...+ +|+.|++++|.++.+|..+ .+++|++|++++|.. ..+. . .......|..++.+++|+.|+ ++.| .+.
T Consensus 346 ~~~~-~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDE-QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTT-TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCc-cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 3444 8999999999999999887 899999999977641 0000 0 001145677888899999998 5544 222
Q ss_pred ecCC------cccC--CCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCC
Q 041975 159 KVSS------SLCN--LKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPP 230 (543)
Q Consensus 159 ~lp~------~i~~--l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 230 (543)
.++. .+.. ...|++|++++|.+.+ +|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.+..
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-
Confidence 2221 0111 1359999999987554 776 999999999999999999999999999999999999999876
Q ss_pred CCCCCCCccccCCCCCeEeccCCCCCcC--CccCCCCCCCCeEecCCCCCccCCccc----cCCCCCCEEec
Q 041975 231 QMGLKLPILFQSQILENLSLINCNIIEL--PESLGQLPSLKYLNLEENNFEKIPSNI----KQVSKLSLLIL 296 (543)
Q Consensus 231 ~~~~~lp~~~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L 296 (543)
+|.+..+++|+.|+|++|+++++ |..++.+++|+.|+|++|.++.+|..+ ..+++|+.|++
T Consensus 501 -----lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -----VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 78899999999999999999996 899999999999999999999877543 34888988864
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=4.3e-16 Score=173.15 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=86.7
Q ss_pred CCCCCCCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccC
Q 041975 99 GYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSG 177 (543)
Q Consensus 99 ~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~ 177 (543)
.|.+...|..+ .+.+|++|+|++|.+ ..+|..+..+++|++|+|++| .+..+|..++++++|++|+|++
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l---------~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQI---------FNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp ------------CCCCCCEEECTTSCC---------SCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTT
T ss_pred ccceecChhhhccCCCCcEEECCCCCC---------CCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcC
Confidence 33344334444 667777777777776 355666667777777777776 3346776677777777777777
Q ss_pred CCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccC-CCCCeEeccCCCC
Q 041975 178 CLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQS-QILENLSLINCNI 255 (543)
Q Consensus 178 ~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l-~~L~~L~Ls~n~l 255 (543)
|.+. .+|..++++++|++|+|++|.++.+|..++.+++|+.|+|++|.+... +|. +..+ ..+..|+|++|.+
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-----~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ-----FLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH-----HHHHHHHHHHHHHHHHHHHCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC-----ChHHHhhcchhhhHHhhccCcc
Confidence 6644 667777777777777777777777777777777777777777766542 333 2211 1122355666666
Q ss_pred Cc-CCccCCCCCCCCeEecCCC
Q 041975 256 IE-LPESLGQLPSLKYLNLEEN 276 (543)
Q Consensus 256 ~~-lp~~l~~l~~L~~L~Ls~n 276 (543)
+. +|. .|+.|+++.|
T Consensus 354 ~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 354 EIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCCCC------C---------
T ss_pred cCcCcc------ccceeEeecc
Confidence 55 442 3445555554
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=7.4e-15 Score=132.62 Aligned_cols=127 Identities=18% Similarity=0.215 Sum_probs=79.4
Q ss_pred CCCCEEeccCCCCC-CcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCC
Q 041975 168 KSLESLYLSGCLKL-EKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQIL 245 (543)
Q Consensus 168 ~~L~~L~Ls~~~~~-~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L 245 (543)
++|++|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+... +|. +..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-----LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-----CCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-----HHHHHhhCCCC
Confidence 44555555554433 34444445555555555555555544 4455566666666666665542 444 4446777
Q ss_pred CeEeccCCCCCcCC--ccCCCCCCCCeEecCCCCCccCCc----cccCCCCCCEEeccccc
Q 041975 246 ENLSLINCNIIELP--ESLGQLPSLKYLNLEENNFEKIPS----NIKQVSKLSLLILDNWK 300 (543)
Q Consensus 246 ~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~~~ 300 (543)
+.|++++|.++++| ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 77777777777755 567777778888888887777765 56777788888887774
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=3.6e-16 Score=173.72 Aligned_cols=191 Identities=16% Similarity=0.138 Sum_probs=102.0
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCccccccc-ccccccCccccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWND-VQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~-~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
.++.|++.++.+...+.. .|+.++|+.+.|..+... ..+...|..+..+++|+.|+|++|. +..+|..+.++++
T Consensus 174 ~~~~l~L~~n~~~~~~~~----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQA----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCS
T ss_pred ccceEEeeCCCCCcchhh----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCC
Confidence 466666666666554432 233444444443321100 0113456677888888888888874 5578877778888
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeE
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENL 248 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L 248 (543)
|++|+|++|.+. .+|..++++++|+.|+|++|.++.+|..++.+++|+.|+|++|.+.. +|. +..+++|+.|
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT------LPWEFGNLCNLQFL 321 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC------CCSSTTSCTTCCCE
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc------cChhhhcCCCccEE
Confidence 888888887755 78888888888888888888888888888888888888888887654 666 7788888888
Q ss_pred eccCCCCCc-CCccCCCCC-CCCeEecCCCCCc-cCCccccCCCCCCEEecccc
Q 041975 249 SLINCNIIE-LPESLGQLP-SLKYLNLEENNFE-KIPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 249 ~Ls~n~l~~-lp~~l~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~ 299 (543)
+|++|.+++ +|..+..+. .+..|+|++|.++ .+| ..|+.|++++|
T Consensus 322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 888888876 555443322 1223667777776 444 34666777766
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=9.7e-15 Score=131.86 Aligned_cols=136 Identities=23% Similarity=0.287 Sum_probs=80.4
Q ss_pred cCCcEEeccccccC-eecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccc-cCCCCCCCCCCcEEE
Q 041975 144 SRLVTLDLRKCLRL-KKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQ-VPSSISCLNRVELLS 221 (543)
Q Consensus 144 ~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~ 221 (543)
++|++|++++|... +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+.. +|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555322 24555445555555555555543332 445555555555555555554 444444456666666
Q ss_pred ccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCc----cCCCCCCCCeEecCCCCCccCCcc
Q 041975 222 FAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPE----SLGQLPSLKYLNLEENNFEKIPSN 284 (543)
Q Consensus 222 L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~n~l~~lp~~ 284 (543)
+++|.+... ..++.+..+++|+.|++++|.++++|. .+..+++|++|++++|.+..+|..
T Consensus 102 Ls~N~l~~~---~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDI---STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSS---GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcc---hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 666655441 001236667777788888887777765 677888888888888888877754
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=2.4e-16 Score=171.49 Aligned_cols=132 Identities=9% Similarity=0.058 Sum_probs=57.5
Q ss_pred ccEEEEEeecCCceeeccChHHHhC-CC-CccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCC----
Q 041975 34 EAIEGISLDMSKVKEICMHPSIFTK-MH-RLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPS---- 107 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~~i~~~~f~~-l~-~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~---- 107 (543)
..++.+.|....+... ....+.+ ++ +|+.|++++|... ....++.....++ +|++|++++|.+.....
T Consensus 112 ~~L~~L~L~~~~i~~~--~~~~l~~~~~~~L~~L~L~~~~~~---~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDL--DLDRLAKARADDLETLKLDKCSGF---TTDGLLSIVTHCR-KIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp TTCCEEEEESCBCCHH--HHHHHHHHHGGGCCEEEEESCEEE---EHHHHHHHHHHCT-TCSEEECTTCEEECCCSHHHH
T ss_pred CCCCeEEeeccEecHH--HHHHHHHhccccCcEEECcCCCCc---CHHHHHHHHhhCC-CCCEEECccccccCcchhHHH
Confidence 4566666654433211 1223333 22 3677777665300 0001111112343 66666666665432211
Q ss_pred -CC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEecc
Q 041975 108 -KI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLS 176 (543)
Q Consensus 108 -~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls 176 (543)
.. .+++|++|++++|.++.+. ...++..+.++++|++|++++|. ...+|..+.++++|++|+++
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKIS----PKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCC----HHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEEC
T ss_pred HHHhcCCCccEEEeeccCCCccC----HHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccc
Confidence 11 4556666666666553110 02333344455555555555552 22233334444444444444
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1e-14 Score=128.87 Aligned_cols=125 Identities=19% Similarity=0.250 Sum_probs=86.0
Q ss_pred CCCCEEeccCCCCC-CcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCC
Q 041975 168 KSLESLYLSGCLKL-EKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQIL 245 (543)
Q Consensus 168 ~~L~~L~Ls~~~~~-~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L 245 (543)
++|++|++++|.+. +.+|..++.+++|+.|++++|.++.+ ..+..+++|+.|++++|.+... +|. +..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-----LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-----THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-----HHHHhhhCCCC
Confidence 44555555555544 35555555555666666666655555 4566666777777777766553 455 4557788
Q ss_pred CeEeccCCCCCcCC--ccCCCCCCCCeEecCCCCCccCCc----cccCCCCCCEEeccc
Q 041975 246 ENLSLINCNIIELP--ESLGQLPSLKYLNLEENNFEKIPS----NIKQVSKLSLLILDN 298 (543)
Q Consensus 246 ~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 298 (543)
++|++++|.++++| ..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888888888754 778888899999999998887775 578888999888763
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.51 E-value=8e-16 Score=167.27 Aligned_cols=253 Identities=13% Similarity=0.055 Sum_probs=123.4
Q ss_pred ccEEEEEeecCCceee--ccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEEC-------------
Q 041975 34 EAIEGISLDMSKVKEI--CMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWD------------- 98 (543)
Q Consensus 34 ~~v~~i~L~~s~~~~~--~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~------------- 98 (543)
..++.+.+....+..+ .--+..+.++++|+.|++++|.. ..++..+..++ +|+.|+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~------~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI------LELVGFFKAAA-NLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG------GGGHHHHHHCT-TCCEEEECBCCCCTTCTTSSS
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH------HHHHHHHhhhh-HHHhhcccccccccchHHHHH
Confidence 4566665554444211 11134456778888888887742 12333444443 55555554
Q ss_pred --------------CCCCCCCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCc
Q 041975 99 --------------GYPLKTLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSS 163 (543)
Q Consensus 99 --------------~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 163 (543)
++....+|..+ .+++|++|+|++|.++. ..++..+..+++|++|+++++.....++..
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~-------~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~ 337 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET-------EDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH-------HHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH-------HHHHHHHHhCcCCCEEeccCccCHHHHHHH
Confidence 33333334333 44555666665555431 122223455566666666533222223332
Q ss_pred ccCCCCCCEEeccC----------CCCCCc--CCcccCCCCCCceeeccCcccc-ccCCCCCC-CCCCcEEEccCcC---
Q 041975 164 LCNLKSLESLYLSG----------CLKLEK--LPEEIGNLGSLKNMVANEIAIS-QVPSSISC-LNRVELLSFAGCK--- 226 (543)
Q Consensus 164 i~~l~~L~~L~Ls~----------~~~~~~--~p~~l~~l~~L~~L~l~~~~i~-~lp~~i~~-l~~L~~L~L~~~~--- 226 (543)
...+++|++|++++ |...+. ++.....+++|++|+++.+.++ ..+..+.. +++|+.|+++++.
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 34456666666663 333321 1112234566666666555554 12222322 5666777665322
Q ss_pred CCCCCC-CCCCCc-cccCCCCCeEeccCCC--CCc-CCccC-CCCCCCCeEecCCCCCc--cCCccccCCCCCCEEeccc
Q 041975 227 GRPPQM-GLKLPI-LFQSQILENLSLINCN--IIE-LPESL-GQLPSLKYLNLEENNFE--KIPSNIKQVSKLSLLILDN 298 (543)
Q Consensus 227 ~~~~~~-~~~lp~-~~~l~~L~~L~Ls~n~--l~~-lp~~l-~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~ 298 (543)
..+..+ ...++. +.++++|+.|++++|. +++ .+..+ ..+++|++|+|++|+++ .++..+..+++|+.|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 111100 000111 4456667777776543 443 22222 23566777777777665 3444456667777777777
Q ss_pred cc
Q 041975 299 WK 300 (543)
Q Consensus 299 ~~ 300 (543)
|+
T Consensus 498 n~ 499 (592)
T 3ogk_B 498 CC 499 (592)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=2.1e-13 Score=126.09 Aligned_cols=128 Identities=23% Similarity=0.238 Sum_probs=99.9
Q ss_pred ceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCc--cccCCcCCcEEeccccccCeecCCcccCCCC
Q 041975 92 QRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPS--SIGNLSRLVTLDLRKCLRLKKVSSSLCNLKS 169 (543)
Q Consensus 92 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 169 (543)
-++++++++.++.+|..+. .+|++|++++|+++ .++. .++.+++|++|+|++|...+..|..+.++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELG---------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCC---------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCC---------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 4788888888888887653 38889999999885 4443 3788888888888888665555777888888
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCcccccc-CCCCCCCCCCcEEEccCcCCCC
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQV-PSSISCLNRVELLSFAGCKGRP 229 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~ 229 (543)
|++|+|++|.+.+..+..++.+++|++|++++|.++.+ |..+..+++|+.|++++|.+..
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 88888888887777777788888888888888888855 5667778888888888877554
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=1.3e-15 Score=165.68 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=52.7
Q ss_pred CCCCccEEEEecCCCCCCcceee-ecCCcccccccceEEEECCCCCCC-----CCCCC-CCCCeeEEEcCCCC--ccccc
Q 041975 58 KMHRLRFFKFYNSISGENRCKVH-HVRSMESLFNEQRYFHWDGYPLKT-----LPSKI-SPEHLVSLEMPNSN--IEQLW 128 (543)
Q Consensus 58 ~l~~Lr~L~l~~n~~~~~~~~~~-~~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~--l~~l~ 128 (543)
.+++|+.|++.+|.. .... ++.....++ +|++|++++|.++. ++... .+++|++|++++|. +..
T Consensus 128 ~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-- 200 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEG----FSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF-- 200 (594)
T ss_dssp HCTTCCEEEEESCEE----EEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH--
T ss_pred hCCCCcEEeCCCcCC----CCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH--
Confidence 466666666666520 1111 222223444 67777777666432 22222 45667777776664 210
Q ss_pred ccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEecc
Q 041975 129 NDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLS 176 (543)
Q Consensus 129 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls 176 (543)
..++..+..+++|++|++++|.....+|..+.++++|++|+++
T Consensus 201 -----~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 201 -----SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp -----HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred -----HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 1222223445666666666664444444444455555555543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=3.4e-13 Score=124.74 Aligned_cols=127 Identities=22% Similarity=0.244 Sum_probs=100.4
Q ss_pred ceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCC
Q 041975 92 QRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLE 171 (543)
Q Consensus 92 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 171 (543)
-++++++++.++.+|..+ .++|++|+|++|+|+ .+|..+..+++|++|+|++|......+..|.++++|+
T Consensus 12 ~~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~---------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT---------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC---------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc---------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 467888888898888765 368899999999884 6777888899999999998855444456688888999
Q ss_pred EEeccCCCCCCcCCcccCCCCCCceeeccCccccccCC-CCCCCCCCcEEEccCcCCC
Q 041975 172 SLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPS-SISCLNRVELLSFAGCKGR 228 (543)
Q Consensus 172 ~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~ 228 (543)
+|+|++|.+.+..|..++.+++|+.|++++|.++.+|. .+..+++|+.|++++|...
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999888777666778888888888888888887776 4667777888877777643
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.1e-13 Score=125.98 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCCc--cCCCCCCC
Q 041975 193 SLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELPE--SLGQLPSL 268 (543)
Q Consensus 193 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L 268 (543)
+|+.|++++|.++.+ ..+..+++|+.|++++|.+.. +|. +..+++|+.|++++|.++++|. .+..+++|
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICR------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCE------ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccc------cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCC
Confidence 555555555555544 345555566666666665543 333 3666777777777777777776 67788888
Q ss_pred CeEecCCCCCccCCcc----ccCCCCCCEEecccccc
Q 041975 269 KYLNLEENNFEKIPSN----IKQVSKLSLLILDNWKR 301 (543)
Q Consensus 269 ~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~~~~ 301 (543)
+.|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 116 ~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 116 TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888888888887764 77888888888887753
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=4.6e-14 Score=124.67 Aligned_cols=123 Identities=17% Similarity=0.140 Sum_probs=72.8
Q ss_pred cceEEEECCCCCC--CCCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCC
Q 041975 91 EQRYFHWDGYPLK--TLPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNL 167 (543)
Q Consensus 91 ~Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l 167 (543)
+|+.|++++|.++ .+|..+ .+++|++|++++|.++ .+ ..++.+++|++|++++|.....+|..+.++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---------SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC---------CC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC---------Cc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 6666666666665 566654 5666666666666664 22 445666666666666664443355555556
Q ss_pred CCCCEEeccCCCCCCc-CCcccCCCCCCceeeccCccccccCC----CCCCCCCCcEEEcc
Q 041975 168 KSLESLYLSGCLKLEK-LPEEIGNLGSLKNMVANEIAISQVPS----SISCLNRVELLSFA 223 (543)
Q Consensus 168 ~~L~~L~Ls~~~~~~~-~p~~l~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~L~ 223 (543)
++|++|++++|.+.+. .+..++.+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666666654432 22456666666666666666665554 34555555555543
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=8.2e-13 Score=122.04 Aligned_cols=38 Identities=37% Similarity=0.491 Sum_probs=18.2
Q ss_pred CCCCCeEeccCCCCCc-CCccCCCCCCCCeEecCCCCCc
Q 041975 242 SQILENLSLINCNIIE-LPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 242 l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
+++|+.|+|++|++++ .|..+..+++|++|+|++|.+.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 3444444444444444 3444455555555555555444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2e-13 Score=124.24 Aligned_cols=124 Identities=20% Similarity=0.307 Sum_probs=85.5
Q ss_pred cceEEEECCCCCCCCCCCCCC-CCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcc-cCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISP-EHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSL-CNLK 168 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l-~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i-~~l~ 168 (543)
+|+.|++++|.++.+|....+ ++|++|++++|.++ .+ ..++.+++|++|+|++| .+..+|..+ ..++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~---------~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---------KL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALP 88 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC---------EE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCC---------cc-cccccCCCCCEEECCCC-cccccCcchhhcCC
Confidence 778888888877777654443 37888888888775 23 45677778888888877 344555443 6777
Q ss_pred CCCEEeccCCCCCCcCCc--ccCCCCCCceeeccCccccccCCC----CCCCCCCcEEEccCcC
Q 041975 169 SLESLYLSGCLKLEKLPE--EIGNLGSLKNMVANEIAISQVPSS----ISCLNRVELLSFAGCK 226 (543)
Q Consensus 169 ~L~~L~Ls~~~~~~~~p~--~l~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~L~~~~ 226 (543)
+|++|++++|.+ +.+|. .++.+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 888888887664 45555 567777777777777777776663 5666666666666654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=120.12 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=74.4
Q ss_pred EEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEe
Q 041975 172 SLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLS 249 (543)
Q Consensus 172 ~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~ 249 (543)
+++++++. +..+|..+. ++|++|++++|.++.+|..+..+++|+.|++++|.+.. ++. +.++++|++|+
T Consensus 14 ~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~------i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST------LSNQSFSNMTQLLTLI 84 (193)
T ss_dssp EEECTTSC-CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEE
T ss_pred EEEcCCCC-CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE------eCHhHccCCCCCCEEE
Confidence 44444432 333443332 34555555555555555555556666666666665544 222 56667777777
Q ss_pred ccCCCCCcCC-ccCCCCCCCCeEecCCCCCccCCc-cccCCCCCCEEeccccc
Q 041975 250 LINCNIIELP-ESLGQLPSLKYLNLEENNFEKIPS-NIKQVSKLSLLILDNWK 300 (543)
Q Consensus 250 Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~ 300 (543)
|++|+++.++ ..+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|+
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 7777777744 457777888888888888887775 36677788888887774
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=3.6e-12 Score=115.90 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=89.1
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccC-ccccCCcCCcEEeccccccCeecC-CcccCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELP-SSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLK 168 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~ 168 (543)
+.+.++++++.++.+|..+ .++|++|++++|+++ .+| ..++.+++|++|++++|. +..+| ..+..++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ---------SLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLT 76 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc---------EeCHHHhcCcccccEEECCCCc-ceEeChhHccCCC
Confidence 4567788888888887544 367888888888875 333 346778888888888774 44444 3457778
Q ss_pred CCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCC-CCCCCCCcEEEccCcCCCC
Q 041975 169 SLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSS-ISCLNRVELLSFAGCKGRP 229 (543)
Q Consensus 169 ~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~ 229 (543)
+|++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 888888888776655555567777888888887777776654 3556777777777766544
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=3.5e-15 Score=162.23 Aligned_cols=224 Identities=17% Similarity=0.179 Sum_probs=107.8
Q ss_pred hCCCCccEEEEecCCCCCCcceeeecCCcc-cccccceEEEECCC-CCCC--CCCCC-CCCCeeEEEcCCCCcccccccc
Q 041975 57 TKMHRLRFFKFYNSISGENRCKVHHVRSME-SLFNEQRYFHWDGY-PLKT--LPSKI-SPEHLVSLEMPNSNIEQLWNDV 131 (543)
Q Consensus 57 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~-~l~~~Lr~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~n~l~~l~~~~ 131 (543)
..+++|+.|++++|. .....+..+. .++ +|+.|++++| .++. ++... .+++|++|+|++|.++..
T Consensus 102 ~~~~~L~~L~L~~~~-----~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~---- 171 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-----VTDDCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV---- 171 (594)
T ss_dssp HHCTTCCEEEEESCB-----CCHHHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC----
T ss_pred HhCCCCCeEEeeCcE-----EcHHHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc----
Confidence 455566666666554 2222222232 333 6666666655 2322 33322 455666666666654311
Q ss_pred cccccCccccCCcCCcEEeccccc-cC--eecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCc------
Q 041975 132 QLEELPSSIGNLSRLVTLDLRKCL-RL--KKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEI------ 202 (543)
Q Consensus 132 ~l~~lp~~l~~l~~L~~L~L~~~~-~l--~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~------ 202 (543)
....++.....+++|++|++++|. .. ..++..+.++++|++|++++|...+.+|..+..+++|++|++..+
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 001122223355566666666553 00 111111233466666666665444445555555566666653322
Q ss_pred -cccccCCCCCCCCCCcEEE-ccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc--CCccCCCCCCCCeEecCCCC
Q 041975 203 -AISQVPSSISCLNRVELLS-FAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE--LPESLGQLPSLKYLNLEENN 277 (543)
Q Consensus 203 -~i~~lp~~i~~l~~L~~L~-L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~ 277 (543)
.+..++..+.++++|+.|. +.+... ..++. +..+++|++|++++|.++. ++..+..+++|++|++++|
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~- 324 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVP------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY- 324 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCG------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-
T ss_pred hhHHHHHHHHhcCCCcccccCCcccch------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-
Confidence 2223333344445555441 211110 11333 3356777777777777654 3344556777777777776
Q ss_pred Cc--cCCccccCCCCCCEEecc
Q 041975 278 FE--KIPSNIKQVSKLSLLILD 297 (543)
Q Consensus 278 l~--~lp~~l~~l~~L~~L~L~ 297 (543)
+. .++.....+++|+.|++.
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEe
Confidence 33 222223346677777663
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=1.1e-15 Score=142.08 Aligned_cols=129 Identities=19% Similarity=0.134 Sum_probs=73.7
Q ss_pred CcCCcEEeccccccCeecCC------cccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCC
Q 041975 143 LSRLVTLDLRKCLRLKKVSS------SLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNR 216 (543)
Q Consensus 143 l~~L~~L~L~~~~~l~~lp~------~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~ 216 (543)
...++.++++.+...+.+|. .+.++++|++|++++|.+.+ +| .++.+++|+.|++++|.++.+|..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 34444444444433333333 55556666666666654333 44 555666666666666666666655555566
Q ss_pred CcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCCCCCcCCc--cCCCCCCCCeEecCCCCCc
Q 041975 217 VELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINCNIIELPE--SLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 217 L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~ 279 (543)
|+.|++++|.+.. +|.+..+++|+.|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 95 L~~L~L~~N~l~~------l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 95 LEELWISYNQIAS------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CSEEEEEEEECCC------HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECcCCcCCc------CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 6666666665544 4445556666666666666665443 5566666666666666665
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=8.8e-12 Score=113.31 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=31.5
Q ss_pred ccCCCCCeEeccCCCCCcCCc-cCCCCCCCCeEecCCCCCccCCcc-ccCCCCCCEEeccccc
Q 041975 240 FQSQILENLSLINCNIIELPE-SLGQLPSLKYLNLEENNFEKIPSN-IKQVSKLSLLILDNWK 300 (543)
Q Consensus 240 ~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~ 300 (543)
..+++|+.|++++|+++++|. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 334444445555555554333 244555555555555555555543 3455566666666554
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=3e-12 Score=128.70 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=39.6
Q ss_pred CCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCC-ccCCCCCCCC-eEecCCCCCccCC-ccccCC
Q 041975 214 LNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELP-ESLGQLPSLK-YLNLEENNFEKIP-SNIKQV 288 (543)
Q Consensus 214 l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~-~L~Ls~n~l~~lp-~~l~~l 288 (543)
+++|+.|++.+|.+.. +|. +.++.+|+.|++.+| ++.++ ..|.++++|+ .+++.+ +++.++ ..+.++
T Consensus 225 ~~~L~~l~L~~n~i~~------I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT------IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCE------ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcce------ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence 4455555555554433 333 555555555555554 44433 3345555555 555555 444443 345555
Q ss_pred CCCCEEecccc
Q 041975 289 SKLSLLILDNW 299 (543)
Q Consensus 289 ~~L~~L~L~~~ 299 (543)
++|+.|++++|
T Consensus 297 ~~L~~l~l~~n 307 (329)
T 3sb4_A 297 DNLRYVLATGD 307 (329)
T ss_dssp TTEEEEEECSS
T ss_pred ccCCEEEeCCC
Confidence 55555555444
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=9.1e-14 Score=129.11 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=117.7
Q ss_pred CCCCCEEeccCCCCCCcCCc------ccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc-c
Q 041975 167 LKSLESLYLSGCLKLEKLPE------EIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI-L 239 (543)
Q Consensus 167 l~~L~~L~Ls~~~~~~~~p~------~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~-~ 239 (543)
...++.++++.+.+.+.+|. .++.+++|++|++++|.++.+| .+..+++|+.|++++|.+.. +|. +
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~------l~~~~ 89 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK------IENLD 89 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS------CSSHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc------ccchh
Confidence 34455555555554444444 8999999999999999999998 88999999999999998775 777 6
Q ss_pred ccCCCCCeEeccCCCCCcCCccCCCCCCCCeEecCCCCCccCCc--cccCCCCCCEEecccccccccCCCC---CCCcEE
Q 041975 240 FQSQILENLSLINCNIIELPESLGQLPSLKYLNLEENNFEKIPS--NIKQVSKLSLLILDNWKRFLSLPEL---PCGSSV 314 (543)
Q Consensus 240 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~l---p~~~~l 314 (543)
..+++|+.|++++|+++++| .+..+++|+.|++++|.++.++. .+..+++|+.|++++|+....+|.- +.....
T Consensus 90 ~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 67799999999999999987 68889999999999999997764 6889999999999999765443320 000011
Q ss_pred eecCCCCCcccc
Q 041975 315 YARHCTSLETLS 326 (543)
Q Consensus 315 ~~~~c~~L~~l~ 326 (543)
.+..+++|+.++
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 134566777665
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=8.2e-11 Score=106.25 Aligned_cols=105 Identities=21% Similarity=0.230 Sum_probs=65.4
Q ss_pred cceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCC-cccCCCC
Q 041975 91 EQRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSS-SLCNLKS 169 (543)
Q Consensus 91 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~ 169 (543)
..+.++++++.++.+|..+ .++|++|+|++|+|+ ...|..++.+++|++|+|++|. +..+|. .+.++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~--------~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQIT--------KLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC--------CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCC--------ccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 4567777777777777655 367777777777775 2234556677777777777763 334443 3456666
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCceeeccCcccc
Q 041975 170 LESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAIS 205 (543)
Q Consensus 170 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~ 205 (543)
|++|+|++|.+.+..+..++.+++|+.|++++|.+.
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 677776666554444444666666666666666554
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=9e-11 Score=106.44 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=68.7
Q ss_pred ceEEEECCCCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCc-ccCCCCC
Q 041975 92 QRYFHWDGYPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSS-LCNLKSL 170 (543)
Q Consensus 92 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L 170 (543)
-+.++++++.++.+|..+. ++|++|+|++|+|+ ...|..++++++|++|+|++| .+..+|.. +.++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQIT--------KLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcc--------ccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchh
Confidence 4677777777777776553 67777777777775 233556677777777777776 44445543 4667777
Q ss_pred CEEeccCCCCCCcCCcccCCCCCCceeeccCccccccC
Q 041975 171 ESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVP 208 (543)
Q Consensus 171 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp 208 (543)
++|+|++|.+.+..+..++.+++|++|++++|.+...+
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 77777776554433334666666666666666665443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=1.3e-10 Score=116.70 Aligned_cols=98 Identities=8% Similarity=0.112 Sum_probs=84.6
Q ss_pred CCCCceeeccCccccccCC-CCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCC-eEeccCCCCCcCC-ccCCCC
Q 041975 191 LGSLKNMVANEIAISQVPS-SISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILE-NLSLINCNIIELP-ESLGQL 265 (543)
Q Consensus 191 l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~-~L~Ls~n~l~~lp-~~l~~l 265 (543)
+++|+.+++.+|.++.+|. .+.++++|+.|++.++ +.. ++. |.++.+|+ .+++.+ +++.++ ..|.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~------I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT------IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE------ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce------ehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence 7899999999999998885 5788999999999987 332 555 88999999 999998 788854 788899
Q ss_pred CCCCeEecCCCCCccCCc-cccCCCCCCEEec
Q 041975 266 PSLKYLNLEENNFEKIPS-NIKQVSKLSLLIL 296 (543)
Q Consensus 266 ~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 296 (543)
++|+.|++++|+++.++. .+.++++|+.|+.
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999999998885 6889999998864
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.17 E-value=1.5e-09 Score=111.91 Aligned_cols=222 Identities=11% Similarity=0.120 Sum_probs=165.1
Q ss_pred ccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCcccc
Q 041975 50 CMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNIEQL 127 (543)
Q Consensus 50 ~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l 127 (543)
.|...+|.++ +|+.+.+..+ ....-...|.. + +|+.+.+.. .++.++.. | ++.+|+.+++++|+++
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~------i~~I~~~aF~~-~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-- 193 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG------LKSIGDMAFFN-S-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-- 193 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT------CCEECTTTTTT-C-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS--
T ss_pred EehHhhcccC-CccEEEeCCC------ccEECHHhcCC-C-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce--
Confidence 5667899986 7999999765 33333445555 3 799999986 77777754 5 8999999999999885
Q ss_pred cccccccccCccccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCc-ccCCCCCCceeeccCcccc
Q 041975 128 WNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPE-EIGNLGSLKNMVANEIAIS 205 (543)
Q Consensus 128 ~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~-~l~~l~~L~~L~l~~~~i~ 205 (543)
.++.......+|+.+.|..+ +..++ .+|.++++|+.+++..+ +..++. .|.+ .+|+.+.+. +.++
T Consensus 194 -------~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 194 -------KLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp -------EECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred -------EechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCcc
Confidence 55554444689999999853 55555 45889999999999873 344443 4555 789999994 4566
Q ss_pred cc-CCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCC-ccCCCCCCCCeEecCCCCCccC
Q 041975 206 QV-PSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELP-ESLGQLPSLKYLNLEENNFEKI 281 (543)
Q Consensus 206 ~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l 281 (543)
.+ ..++.++++|+.+.+.++...... ...++. +.++++|+.+.+.+ +++.++ ..+.++++|+.+.|.. +++.+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~-~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I 337 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDP-EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQI 337 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCT-TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEE
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCc-ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEE
Confidence 66 457888999999999987754110 011444 88999999999994 577754 5677899999999955 47766
Q ss_pred C-ccccCCCCCCEEeccccc
Q 041975 282 P-SNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 282 p-~~l~~l~~L~~L~L~~~~ 300 (543)
+ ..+.++ +|+.|++.+|.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSS
T ss_pred cHHhCCCC-CCCEEEEcCCC
Confidence 5 467888 99999999984
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.16 E-value=2.4e-09 Score=110.23 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=174.4
Q ss_pred HhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-CCCCCeeEEEcCCCCccccccccccc
Q 041975 56 FTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-ISPEHLVSLEMPNSNIEQLWNDVQLE 134 (543)
Q Consensus 56 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~~l~~L~~L~L~~n~l~~l~~~~~l~ 134 (543)
+.-+..++.+.+-++ ....-...|.. + +|+.+.+..+ ++.|+.. |.-.+|+.+.+.. .++
T Consensus 109 ~~~~~~l~~i~ip~~------i~~I~~~aF~~-~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~--------- 169 (401)
T 4fdw_A 109 TEILKGYNEIILPNS------VKSIPKDAFRN-S-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLE--------- 169 (401)
T ss_dssp EEECSSCSEEECCTT------CCEECTTTTTT-C-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCC---------
T ss_pred EEecCCccEEEECCc------cCEehHhhccc-C-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Ccc---------
Confidence 344567777777653 33333445555 4 7999998766 7777764 4335799999986 554
Q ss_pred ccC-ccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCC
Q 041975 135 ELP-SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISC 213 (543)
Q Consensus 135 ~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~ 213 (543)
.++ .+|.++++|+.+++..| .+..++.......+|+.+.+.. +....-...|.++.+|+.+.+..+ ++.++.....
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~ 246 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR 246 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred EehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCccccccc
Confidence 333 47899999999999987 6677776554578999999985 333333456889999999999874 6666654433
Q ss_pred CCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCC-----c-CCccCCCCCCCCeEecCCCCCccCC-cc
Q 041975 214 LNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNII-----E-LPESLGQLPSLKYLNLEENNFEKIP-SN 284 (543)
Q Consensus 214 l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~-----~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~ 284 (543)
-.+|+.+.+..+ +.. ++. +.++++|+.+++.++.+. . -+..+.++++|+.+.|. ++++.++ ..
T Consensus 247 ~~~L~~i~lp~~-i~~------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~a 318 (401)
T 4fdw_A 247 ESGITTVKLPNG-VTN------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGL 318 (401)
T ss_dssp TCCCSEEEEETT-CCE------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTT
T ss_pred cCCccEEEeCCC-ccE------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhh
Confidence 489999999543 222 444 889999999999998775 3 34678889999999999 5688776 45
Q ss_pred ccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcccccCCcceeeecccC
Q 041975 285 IKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTLFKPLCQKFDFCNCF 345 (543)
Q Consensus 285 l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~~~~~~~~~~~~~c~ 345 (543)
+.++++|+.+.|..+ ++.++.- ...+| +|+++....+.. +.+..-.|.+|+
T Consensus 319 F~~c~~L~~l~lp~~--l~~I~~~------aF~~~-~L~~l~l~~n~~-~~l~~~~F~~~~ 369 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN--VTQINFS------AFNNT-GIKEVKVEGTTP-PQVFEKVWYGFP 369 (401)
T ss_dssp TTTCCSCCEEEECTT--CCEECTT------SSSSS-CCCEEEECCSSC-CBCCCSSCCCSC
T ss_pred hcCCCCccEEEECcc--ccEEcHH------hCCCC-CCCEEEEcCCCC-cccccccccCCC
Confidence 788999999999765 4444421 13567 888877654421 123334455664
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=2.1e-10 Score=103.99 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=53.0
Q ss_pred eEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCC
Q 041975 115 VSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSL 194 (543)
Q Consensus 115 ~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L 194 (543)
+.++++++++ ..+|..+. ++|++|+|++|...+..|..+.++++|++|+|++|.+.+..+..++++++|
T Consensus 15 ~~l~~~~n~l---------~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRL---------ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCC---------SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCC---------CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 4566666665 34454432 556666666654333334455556666666666654443322334555555
Q ss_pred ceeeccCccccccCCC-CCCCCCCcEEEccCcCC
Q 041975 195 KNMVANEIAISQVPSS-ISCLNRVELLSFAGCKG 227 (543)
Q Consensus 195 ~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~ 227 (543)
+.|++++|.++.+|.. +..+++|+.|++++|.+
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCc
Confidence 5555555555555443 44455555555555443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=2.2e-10 Score=103.42 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=62.4
Q ss_pred eeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCC
Q 041975 114 LVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGS 193 (543)
Q Consensus 114 L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~ 193 (543)
.++|++++|.++ .+|..+ .++|++|+|++|...+..|..+.++++|++|+|++|.+.+..+..+..+++
T Consensus 11 ~~~l~~s~n~l~---------~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKSLA---------SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSCCS---------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEeCCCCcC---------ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 456777777663 455544 266777777766444434555666677777777766655444444566666
Q ss_pred CceeeccCccccccCC-CCCCCCCCcEEEccCcCCC
Q 041975 194 LKNMVANEIAISQVPS-SISCLNRVELLSFAGCKGR 228 (543)
Q Consensus 194 L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~ 228 (543)
|++|++++|.++.+|. .+..+++|+.|++++|.+.
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666666666666554 3555666666666665543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=9.7e-12 Score=126.97 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=20.0
Q ss_pred cCCCCCeEeccCCCCCc-----CCccCCCCCCCCeEecCCCCCc
Q 041975 241 QSQILENLSLINCNIIE-----LPESLGQLPSLKYLNLEENNFE 279 (543)
Q Consensus 241 ~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 279 (543)
..++|+.|+|++|.+++ +...+...++|++|+|++|.++
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 33455555555555543 2233334455666666666554
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=5.4e-09 Score=105.47 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=45.3
Q ss_pred ccCccccCCcCCcEEeccc-cccCeecC-CcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCC
Q 041975 135 ELPSSIGNLSRLVTLDLRK-CLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSIS 212 (543)
Q Consensus 135 ~lp~~l~~l~~L~~L~L~~-~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~ 212 (543)
.+|. +..+++|++|+|++ | .+..+| ..|.++++|++|+|++|.+.+..|..|+++++|+.|+|++|.++.+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3444 45555555555553 3 233332 335555555555555555444444445555555555555555555554333
Q ss_pred CCCCCcEEEccCcCCC
Q 041975 213 CLNRVELLSFAGCKGR 228 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~ 228 (543)
....|+.|++.+|.+.
T Consensus 101 ~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 101 QGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCCEEECCSSCCC
T ss_pred ccCCceEEEeeCCCcc
Confidence 3223555555555543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=6.6e-09 Score=104.79 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=81.9
Q ss_pred eEEEECCC-CCCCCCCCC-CCCCeeEEEcCC-CCcccccccccccccC-ccccCCcCCcEEeccccccCeecCCcccCCC
Q 041975 93 RYFHWDGY-PLKTLPSKI-SPEHLVSLEMPN-SNIEQLWNDVQLEELP-SSIGNLSRLVTLDLRKCLRLKKVSSSLCNLK 168 (543)
Q Consensus 93 r~L~l~~~-~l~~lp~~~-~l~~L~~L~L~~-n~l~~l~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 168 (543)
..++.+++ .++.+|. + .+.+|++|+|++ |+|+ .+| ..|+++++|++|+|++|...+..|..|.+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~---------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ---------HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCC---------EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCC---------CcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 34577887 8999999 7 788999999996 9885 444 5789999999999999965555566789999
Q ss_pred CCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccc
Q 041975 169 SLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQ 206 (543)
Q Consensus 169 ~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~ 206 (543)
+|++|+|++|.+.+..+..+..+. |+.|++.+|.+..
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999999876654444455554 9999999998764
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=2.4e-11 Score=124.00 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=61.2
Q ss_pred CCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-----CCccCCCCCCCCeEecCCCCCc-----cCC
Q 041975 214 LNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-----LPESLGQLPSLKYLNLEENNFE-----KIP 282 (543)
Q Consensus 214 l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp 282 (543)
.++|+.|++++|.+..... ..++. +...++|++|+|++|.+++ ++..+...++|++|+|++|.++ .++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGV-AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TCCCCEEECCSSCCHHHHH-HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHH-HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 4566666766666432100 00111 4566778888888888875 4566777889999999999997 344
Q ss_pred ccccCCCCCCEEecccccc
Q 041975 283 SNIKQVSKLSLLILDNWKR 301 (543)
Q Consensus 283 ~~l~~l~~L~~L~L~~~~~ 301 (543)
..+...++|+.|+|++|+.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHCSSCCEEECTTSSC
T ss_pred HHHHhCCCCCEEeccCCCC
Confidence 5566789999999999964
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.82 E-value=1.5e-07 Score=96.61 Aligned_cols=193 Identities=17% Similarity=0.183 Sum_probs=98.3
Q ss_pred cccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCC
Q 041975 139 SIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRV 217 (543)
Q Consensus 139 ~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L 217 (543)
.+.++.+|+.+.+..+ +..++ ..+.++..|+.+.+..+. ..+.+......+|+.+.+......--...+..+.+|
T Consensus 180 ~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDL 255 (394)
T ss_dssp TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSC
T ss_pred cccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCCceecccccccccccc
Confidence 4555666666666543 33333 335566667766665421 112222223344555544332111111223344444
Q ss_pred cEEEccCcCCCCCCC--------------CCCCCc--cccCCCCCeEeccCCCCCcCC-ccCCCCCCCCeEecCCCCCcc
Q 041975 218 ELLSFAGCKGRPPQM--------------GLKLPI--LFQSQILENLSLINCNIIELP-ESLGQLPSLKYLNLEENNFEK 280 (543)
Q Consensus 218 ~~L~L~~~~~~~~~~--------------~~~lp~--~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~ 280 (543)
+.+.+..+....... ...++. +..+.+|+.+.+.++ ++.++ ..+.++.+|+.++|.. .++.
T Consensus 256 ~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~ 333 (394)
T 4fs7_A 256 ESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEE 333 (394)
T ss_dssp CEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred eeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccE
Confidence 444443322110000 001222 556677777777654 55543 4566778888888864 3666
Q ss_pred CC-ccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCCcccccCCcceeeecccCCCC
Q 041975 281 IP-SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNLSTLFKPLCQKFDFCNCFKLN 348 (543)
Q Consensus 281 lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~~~~~~~~~~~~~~~~c~~L~ 348 (543)
+. ..+.++.+|+.+.+..+ ++.+++- ...+|++|+++....+. ... ...|.+|.+|+
T Consensus 334 I~~~aF~~c~~L~~i~lp~~--l~~I~~~------aF~~C~~L~~i~lp~~~--~~~-~~~F~~c~~L~ 391 (394)
T 4fs7_A 334 IGKRSFRGCTSLSNINFPLS--LRKIGAN------AFQGCINLKKVELPKRL--EQY-RYDFEDTTKFK 391 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT--CCEECTT------TBTTCTTCCEEEEEGGG--GGG-GGGBCTTCEEE
T ss_pred EhHHhccCCCCCCEEEECcc--ccEehHH------HhhCCCCCCEEEECCCC--EEh-hheecCCCCCc
Confidence 65 45677788888877654 4444321 24678888887765442 112 24577887774
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=2.5e-09 Score=108.42 Aligned_cols=166 Identities=13% Similarity=0.072 Sum_probs=83.8
Q ss_pred CcccccEEEEEeecCCce--ee----ccChHHHhCCCCccEEEEecCCCCCCcc----eeeecCCcccccccceEEEECC
Q 041975 30 DKGSEAIEGISLDMSKVK--EI----CMHPSIFTKMHRLRFFKFYNSISGENRC----KVHHVRSMESLFNEQRYFHWDG 99 (543)
Q Consensus 30 ~~~~~~v~~i~L~~s~~~--~~----~i~~~~f~~l~~Lr~L~l~~n~~~~~~~----~~~~~~~l~~l~~~Lr~L~l~~ 99 (543)
......|+.+.++.-... .. .--..+..++++|+.|.+.+........ ...+...+..+| +|+.|.+++
T Consensus 103 ~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g 181 (362)
T 2ra8_A 103 DKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKG 181 (362)
T ss_dssp CTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEEC
T ss_pred CCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeC
Confidence 345567888888854421 00 0012335567899999886542111001 011222334455 888888887
Q ss_pred CCCCCCCCCCCCCCeeEEEcCCCCcccccccccccccCcccc--CCcCCcEEecccccc-------CeecCCcc--cCCC
Q 041975 100 YPLKTLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPSSIG--NLSRLVTLDLRKCLR-------LKKVSSSL--CNLK 168 (543)
Q Consensus 100 ~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~--~l~~L~~L~L~~~~~-------l~~lp~~i--~~l~ 168 (543)
+.-..++. +.+++|++|+|..+.+. ......+. .+++|++|+|+.+.. ...+...+ ..++
T Consensus 182 ~~~l~l~~-~~~~~L~~L~L~~~~l~--------~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p 252 (362)
T 2ra8_A 182 TNNLSIGK-KPRPNLKSLEIISGGLP--------DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252 (362)
T ss_dssp CBTCBCCS-CBCTTCSEEEEECSBCC--------HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCT
T ss_pred CCCceecc-ccCCCCcEEEEecCCCC--------hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCC
Confidence 73223444 45778888888777664 22222232 677888887753211 11111111 2356
Q ss_pred CCCEEeccCCCCCCcCCccc---CCCCCCceeeccCcccc
Q 041975 169 SLESLYLSGCLKLEKLPEEI---GNLGSLKNMVANEIAIS 205 (543)
Q Consensus 169 ~L~~L~Ls~~~~~~~~p~~l---~~l~~L~~L~l~~~~i~ 205 (543)
+|++|++++|.+....+..+ ..+++|++|+++.|.++
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 66666666655432211111 13445555555555444
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.69 E-value=3.1e-07 Score=94.28 Aligned_cols=272 Identities=13% Similarity=0.081 Sum_probs=153.8
Q ss_pred eeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCcc
Q 041975 48 EICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNIE 125 (543)
Q Consensus 48 ~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~ 125 (543)
...|...||.++.+|+.+.+..+ ....-...|..+. +|+.+++..+ ++.++.. | ++.+|+.+.+..+ ++
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~------i~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~ 129 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST------VREIGEFAFENCS-KLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK 129 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT------CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC------ccCcchhHhhCCC-CCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee
Confidence 34678889999999999999654 3333345677775 8999998754 6666553 3 6677777666543 22
Q ss_pred cccccc-------------ccccc-CccccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCcccCC
Q 041975 126 QLWNDV-------------QLEEL-PSSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPEEIGN 190 (543)
Q Consensus 126 ~l~~~~-------------~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~ 190 (543)
.+.... ....+ ..++.++++|+.+.+..+ ...++ ..+.++.+|+.+.+..+ ....-...+.+
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~ 206 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE 206 (394)
T ss_dssp EECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred eecceeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence 111100 11111 234667777777777643 33343 34666777777777653 22222234666
Q ss_pred CCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCC---------
Q 041975 191 LGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELP--------- 259 (543)
Q Consensus 191 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp--------- 259 (543)
+..|+.+.+..+.. .+........+|+.+.+...... +.. +..+..|+.+.+..+...--.
T Consensus 207 ~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~-------i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 207 CILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDSFTE-------LGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGL 278 (394)
T ss_dssp CTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTTCCE-------ECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTC
T ss_pred ccccceeecCCCce-EeehhhcccCCCceEEECCCcee-------cccccccccccceeEEcCCCcceeecccccccccc
Confidence 77777776655432 22333444567777766543211 221 455566666666544221111
Q ss_pred ------------ccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCcccc
Q 041975 260 ------------ESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLS 326 (543)
Q Consensus 260 ------------~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~ 326 (543)
..+..+.+|+.+.+..+ ++.++ ..+.++.+|+.+++..+ ++.+++- ...+|.+|+++.
T Consensus 279 ~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~------aF~~c~~L~~i~ 349 (394)
T 4fs7_A 279 KKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKR------SFRGCTSLSNIN 349 (394)
T ss_dssp CEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT------TTTTCTTCCEEC
T ss_pred ceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHH------hccCCCCCCEEE
Confidence 23445666777766543 55554 34667777777777532 3333321 236799999887
Q ss_pred CCcccccCCcceeeecccCCCChh
Q 041975 327 NLSTLFKPLCQKFDFCNCFKLNRN 350 (543)
Q Consensus 327 ~~~~~~~~~~~~~~~~~c~~L~~~ 350 (543)
...+ ...+..-.|.+|.+|+..
T Consensus 350 lp~~--l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 350 FPLS--LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp CCTT--CCEECTTTBTTCTTCCEE
T ss_pred ECcc--ccEehHHHhhCCCCCCEE
Confidence 6554 222344578889888543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.56 E-value=4.7e-06 Score=85.41 Aligned_cols=269 Identities=12% Similarity=0.121 Sum_probs=148.3
Q ss_pred ccChHHHhCCC-CccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCC---CCCCCCC-C-CCCCeeEEEcCCCC
Q 041975 50 CMHPSIFTKMH-RLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYP---LKTLPSK-I-SPEHLVSLEMPNSN 123 (543)
Q Consensus 50 ~i~~~~f~~l~-~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~---l~~lp~~-~-~l~~L~~L~L~~n~ 123 (543)
.|...||.+++ .|+.+.+-.+ ....-...|..+. +|+.+.+..+. ++.++.. | .+.+|+.+.+..+
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s------vt~Ig~~AF~~C~-~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT------VTEIGSNAFYNCT-SLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT------CCEECTTTTTTCT-TCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred EcCHhhccCCCCcCEEEEECCC------eeEEhHHHhhCCc-cCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence 56677888875 5888888543 3333445666665 88888887653 5555543 3 5677777666544
Q ss_pred cccccccccccccC-ccccCCcCCcEEeccccccCeecC-CcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccC
Q 041975 124 IEQLWNDVQLEELP-SSIGNLSRLVTLDLRKCLRLKKVS-SSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANE 201 (543)
Q Consensus 124 l~~l~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~ 201 (543)
++ .++ ..+..+.+|+.+.+..+ ...++ ..+..+.+|+.+.+..+ +..+....-...+|+.+.+..
T Consensus 125 ~~---------~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 125 VT---------EIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp CS---------EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred cc---------eehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 22 232 24566777777777642 33333 34566667777766542 222222222234555555544
Q ss_pred ccccccCCCCCCCCCCcEEEccCcCCCCC-----------------------CCCCCCCc---------cccCCCCCeEe
Q 041975 202 IAISQVPSSISCLNRVELLSFAGCKGRPP-----------------------QMGLKLPI---------LFQSQILENLS 249 (543)
Q Consensus 202 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-----------------------~~~~~lp~---------~~~l~~L~~L~ 249 (543)
+-...-...+..+.++............. .....+|. +.++..|+.+.
T Consensus 192 ~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 192 KVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVK 271 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEE
T ss_pred cccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEe
Confidence 32222223344444444433322111000 00001111 55667777777
Q ss_pred ccCCCCCcCCccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCccccCC
Q 041975 250 LINCNIIELPESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLETLSNL 328 (543)
Q Consensus 250 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~l~~~ 328 (543)
+.++...--...+.++++|+.+.+. +.++.++ ..+.++.+|+.+.|..+ ++.+++- -..+|.+|+++...
T Consensus 272 lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~------aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 272 MPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD------AFAGCEQLERIAIP 342 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT------TTTTCTTCCEEEEC
T ss_pred cccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh------HhhCCCCCCEEEEC
Confidence 7654322233456677888888885 4566666 34677888888888653 4444321 23678888888765
Q ss_pred cccccCCcceeeecccCCCChh
Q 041975 329 STLFKPLCQKFDFCNCFKLNRN 350 (543)
Q Consensus 329 ~~~~~~~~~~~~~~~c~~L~~~ 350 (543)
.+ ......-.|.+|.+|+..
T Consensus 343 ~s--v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 343 SS--VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TT--CCBCCGGGGTTCTTCCEE
T ss_pred cc--cCEEhHhHhhCCCCCCEE
Confidence 44 222455678888888543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=1.6e-08 Score=102.35 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=32.3
Q ss_pred cCccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccC--CCCCCceeecc
Q 041975 136 LPSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIG--NLGSLKNMVAN 200 (543)
Q Consensus 136 lp~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~--~l~~L~~L~l~ 200 (543)
+...+..+++|+.|+|++|... .++. + .+++|++|++..|.+.......+. .+++|+.|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3344556677777777766322 2333 3 256677777766553322212222 45666666653
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.42 E-value=4e-05 Score=77.81 Aligned_cols=283 Identities=10% Similarity=0.088 Sum_probs=145.3
Q ss_pred cccEEEEEeecCCceeeccChHHHhCCCCccEEEEecCCCCCCcceeeecCCcccccccceEEEECCCCCCCCCCC-CCC
Q 041975 33 SEAIEGISLDMSKVKEICMHPSIFTKMHRLRFFKFYNSISGENRCKVHHVRSMESLFNEQRYFHWDGYPLKTLPSK-ISP 111 (543)
Q Consensus 33 ~~~v~~i~L~~s~~~~~~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~~l 111 (543)
.+.++.+.+.- .+ ..|...||.++.+|+.+.+..+ ....-...|... +|+.+.+.. .++.++.. |..
T Consensus 45 ~~~i~~v~ip~-~v--t~Ig~~aF~~C~~L~~I~lp~~------v~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~ 112 (379)
T 4h09_A 45 RDRISEVRVNS-GI--TSIGEANFNSCYNMTKVTVAST------VTSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQG 112 (379)
T ss_dssp GGGCSEEEECT-TE--EEECTTTTTTCTTCCEEEECTT------CCEECTTTTTTC--CCCEEEECT-TCCEECTTTTTT
T ss_pred ccCCEEEEeCC-Cc--cChHHHHhhCCCCCCEEEeCCc------ceEechhhhcCC--CCceEECCc-eeeEeccceecc
Confidence 34566666653 23 3677889999999999999654 222223344443 577777654 35555553 344
Q ss_pred CCeeEEEcCCCCcccccccc-------------cccccC-ccccCCcCCcEEeccccccCee------------cCCccc
Q 041975 112 EHLVSLEMPNSNIEQLWNDV-------------QLEELP-SSIGNLSRLVTLDLRKCLRLKK------------VSSSLC 165 (543)
Q Consensus 112 ~~L~~L~L~~n~l~~l~~~~-------------~l~~lp-~~l~~l~~L~~L~L~~~~~l~~------------lp~~i~ 165 (543)
.+|+.+.+..+- +.+.... ++..+. ..+..+.+++.+.+..+..... ....+.
T Consensus 113 ~~L~~i~lp~~~-~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 113 TDLDDFEFPGAT-TEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CCCSEEECCTTC-CEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred CCcccccCCCcc-ccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 578888887642 2111100 001111 1123333344333332211100 000111
Q ss_pred CCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccCCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCC
Q 041975 166 NLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVPSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQ 243 (543)
Q Consensus 166 ~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~ 243 (543)
....+..+.+... ........+....+|+.+.+..+-..--...+..+.+|+.+.+..+- .. +.. +.++.
T Consensus 192 ~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v-~~------I~~~aF~~~~ 263 (379)
T 4h09_A 192 AAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNV-TS------IGSFLLQNCT 263 (379)
T ss_dssp TTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTC-CE------ECTTTTTTCT
T ss_pred ccccccccccccc-eeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCCc-cE------eCccccceee
Confidence 1222222222221 11111122344555555555433211222345566777777765431 11 322 66677
Q ss_pred CCCeEeccCCCCCcCC-ccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCC
Q 041975 244 ILENLSLINCNIIELP-ESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTS 321 (543)
Q Consensus 244 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~ 321 (543)
+|+.+.+..+ +..++ ..+..+++|+.+.+.++.++.++ ..+.++.+|+.+.|..+ ++.|++- -..+|.+
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~------aF~~C~~ 334 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVY------AFKNCKA 334 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTT------TTTTCTT
T ss_pred hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHH------HhhCCCC
Confidence 7888877543 55543 45677888888888888888776 45778888888888643 4444421 1357888
Q ss_pred CccccCCcccccCCcceeeecccCCC
Q 041975 322 LETLSNLSTLFKPLCQKFDFCNCFKL 347 (543)
Q Consensus 322 L~~l~~~~~~~~~~~~~~~~~~c~~L 347 (543)
|+++....+ ...+..-.|.+|..+
T Consensus 335 L~~i~ip~~--v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 335 LSTISYPKS--ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCCCTT--CCEECTTTTTTSSCC
T ss_pred CCEEEECCc--cCEEchhHhhCCCCC
Confidence 888876544 111333456666433
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.37 E-value=1.9e-05 Score=80.90 Aligned_cols=246 Identities=12% Similarity=0.173 Sum_probs=134.3
Q ss_pred ccChHHHhCCCCccEEEEecCCCCCCcceeee-cCCcccccccceEEEECCCCCCCCCCC-C-CCCCeeEEEcCCCCccc
Q 041975 50 CMHPSIFTKMHRLRFFKFYNSISGENRCKVHH-VRSMESLFNEQRYFHWDGYPLKTLPSK-I-SPEHLVSLEMPNSNIEQ 126 (543)
Q Consensus 50 ~i~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~ 126 (543)
.|...||.++.+|+.+.+..+.- . ....+ ...|.... +|+.+.+..+ ++.++.. | .+.+|+.+.+..+- .
T Consensus 77 ~Ig~~AF~~C~~L~~i~~~~n~p--~-~l~~Ig~~aF~~c~-~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~- 149 (394)
T 4gt6_A 77 EIGSNAFYNCTSLKRVTIQDNKP--S-CVKKIGRQAFMFCS-ELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-T- 149 (394)
T ss_dssp EECTTTTTTCTTCCEEEEGGGCC--C-CCCEECTTTTTTCT-TCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-C-
T ss_pred EEhHHHhhCCccCceEeecCCCC--C-eeeEechhhchhcc-cceeeccCCc-cceehhhhhhhhccccccccccee-e-
Confidence 56778999999999999976530 0 11223 23444443 6666655433 4455443 3 67788888886542 2
Q ss_pred cccccccccc-CccccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCc---
Q 041975 127 LWNDVQLEEL-PSSIGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEI--- 202 (543)
Q Consensus 127 l~~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~--- 202 (543)
.+ ...+..+.+|+.+.+..+ +..+........+|+.+.+... ....-...+.++.++........
T Consensus 150 --------~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 150 --------SVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp --------EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred --------eecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhccccceecccccccc
Confidence 22 234566677777776642 3344333223345666655431 11111122233333332221110
Q ss_pred ---------------------------------ccccc-CCCCCCCCCCcEEEccCcCCCCCCCCCCCCc--cccCCCCC
Q 041975 203 ---------------------------------AISQV-PSSISCLNRVELLSFAGCKGRPPQMGLKLPI--LFQSQILE 246 (543)
Q Consensus 203 ---------------------------------~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~lp~--~~~l~~L~ 246 (543)
.++.+ ..++..+.+|+.+.+...... +.. +.++++|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-------I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-------IGTGAFMNCPALQ 291 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-------ECTTTTTTCTTCC
T ss_pred cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-------ecCcccccccccc
Confidence 11111 134566777888777544321 222 66777788
Q ss_pred eEeccCCCCCcCC-ccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEEecccccccccCCCCCCCcEEeecCCCCCcc
Q 041975 247 NLSLINCNIIELP-ESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLLILDNWKRFLSLPELPCGSSVYARHCTSLET 324 (543)
Q Consensus 247 ~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~lp~~~~l~~~~c~~L~~ 324 (543)
.+.+. +.++.++ ..+.++.+|+.+.|..+ ++.+. ..+.++.+|+.+.+..+ ++.+++ --..+|++|++
T Consensus 292 ~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~------~aF~~C~~L~~ 361 (394)
T 4gt6_A 292 DIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPE------SAFSNCTALNN 361 (394)
T ss_dssp EEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCG------GGGTTCTTCCE
T ss_pred cccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhH------hHhhCCCCCCE
Confidence 88875 3455544 45667788888888653 56554 45677788888877543 344432 12357888887
Q ss_pred ccCCcc
Q 041975 325 LSNLST 330 (543)
Q Consensus 325 l~~~~~ 330 (543)
+....+
T Consensus 362 i~~~~~ 367 (394)
T 4gt6_A 362 IEYSGS 367 (394)
T ss_dssp EEESSC
T ss_pred EEECCc
Confidence 765443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.14 E-value=1.5e-07 Score=85.86 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=41.0
Q ss_pred ccCCCCCeEeccCCCCCc-----CCccCCCCCCCCeEec--CCCCCc-----cCCccccCCCCCCEEeccccc
Q 041975 240 FQSQILENLSLINCNIIE-----LPESLGQLPSLKYLNL--EENNFE-----KIPSNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 240 ~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L--s~n~l~-----~lp~~l~~l~~L~~L~L~~~~ 300 (543)
...++|++|+|++|.+.+ +...+...++|++|+| ++|.+. .+...+...++|+.|++++|.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 344567777777777665 4556666777888888 777776 244455666778888887774
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=9.8e-07 Score=80.41 Aligned_cols=15 Identities=0% Similarity=0.020 Sum_probs=6.7
Q ss_pred ccCCcCCcEEecccc
Q 041975 140 IGNLSRLVTLDLRKC 154 (543)
Q Consensus 140 l~~l~~L~~L~L~~~ 154 (543)
+...++|++|+|++|
T Consensus 61 L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 61 LKTNTYVKKFSIVGT 75 (185)
T ss_dssp HTTCCSCCEEECTTS
T ss_pred HHhCCCcCEEECcCC
Confidence 333444444444444
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.84 E-value=0.0015 Score=65.97 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=101.4
Q ss_pred ccCCcCCcEEeccccccCeecCCcccCCCCCCEEeccCCCCCCcCCcccCCCCCCceeeccCccccccC-CCCCCCCCCc
Q 041975 140 IGNLSRLVTLDLRKCLRLKKVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLGSLKNMVANEIAISQVP-SSISCLNRVE 218 (543)
Q Consensus 140 l~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~ 218 (543)
+.....+..+.+... ........+....+|+.+.+..+ ....-...+.++.+|+.+.+..+ ++.+. ..+.++.+|+
T Consensus 190 ~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 344555666655542 22233344667788998888653 22223345678889999988765 55443 4567788999
Q ss_pred EEEccCcCCCCCCCCCCCCc--cccCCCCCeEeccCCCCCcCC-ccCCCCCCCCeEecCCCCCccCC-ccccCCCCCCEE
Q 041975 219 LLSFAGCKGRPPQMGLKLPI--LFQSQILENLSLINCNIIELP-ESLGQLPSLKYLNLEENNFEKIP-SNIKQVSKLSLL 294 (543)
Q Consensus 219 ~L~L~~~~~~~~~~~~~lp~--~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 294 (543)
.+.+..+- .. ++. +.++.+|+.+.+.++.++.++ ..+.++.+|+.+.|.. +++.+. ..+.++.+|+.+
T Consensus 267 ~i~l~~~i-~~------i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 267 TLNFYAKV-KT------VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp EEEECCCC-SE------ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCC
T ss_pred cccccccc-ee------ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEE
Confidence 99886532 11 333 788899999999998888864 5678899999999965 477666 457788888888
Q ss_pred eccc
Q 041975 295 ILDN 298 (543)
Q Consensus 295 ~L~~ 298 (543)
.+..
T Consensus 339 ~ip~ 342 (379)
T 4h09_A 339 SYPK 342 (379)
T ss_dssp CCCT
T ss_pred EECC
Confidence 7754
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=6e-06 Score=73.92 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=43.8
Q ss_pred CCcEEEccCcCCCCCCCCCCCCccccCCCCCeEeccCC-CCCc-CCccCCCC----CCCCeEecCCC-CCc--cCCcccc
Q 041975 216 RVELLSFAGCKGRPPQMGLKLPILFQSQILENLSLINC-NIIE-LPESLGQL----PSLKYLNLEEN-NFE--KIPSNIK 286 (543)
Q Consensus 216 ~L~~L~L~~~~~~~~~~~~~lp~~~~l~~L~~L~Ls~n-~l~~-lp~~l~~l----~~L~~L~Ls~n-~l~--~lp~~l~ 286 (543)
+|+.|++++|.+.. ..+..+.++++|++|+|++| ++++ --..+..+ ++|++|+|++| +++ .+ ..+.
T Consensus 62 ~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp CEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred eEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 45555555555322 12333455566666666666 3444 11223332 35777777776 355 22 2355
Q ss_pred CCCCCCEEecccccccc
Q 041975 287 QVSKLSLLILDNWKRFL 303 (543)
Q Consensus 287 ~l~~L~~L~L~~~~~l~ 303 (543)
.+++|+.|+|++|+.++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 66777777777776543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=1.6e-05 Score=76.51 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=25.3
Q ss_pred CcCCcEEeccccccCe--ecCCcccCCCCCCEEeccCCCCCCcCCcccCCCC--CCceeeccCcccc
Q 041975 143 LSRLVTLDLRKCLRLK--KVSSSLCNLKSLESLYLSGCLKLEKLPEEIGNLG--SLKNMVANEIAIS 205 (543)
Q Consensus 143 l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~--~L~~L~l~~~~i~ 205 (543)
+++|+.|+|++|.... .+|..+..+++|++|+|++|.+.+. ..+..+. +|++|++++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 4444444444442222 2223333444555555554443322 1122222 4555555555544
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=1.2e-05 Score=71.85 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCCCC-CCCCeeEEEcCCCCcccccccccccccCccccCCcCCcEEeccccccCeecC-CcccCC----CCCCEEeccCC
Q 041975 105 LPSKI-SPEHLVSLEMPNSNIEQLWNDVQLEELPSSIGNLSRLVTLDLRKCLRLKKVS-SSLCNL----KSLESLYLSGC 178 (543)
Q Consensus 105 lp~~~-~l~~L~~L~L~~n~l~~l~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~i~~l----~~L~~L~Ls~~ 178 (543)
+|... .-.+|++||++++.|+. .--..+..+++|++|+|++|..++.-- ..+..+ ++|++|+|++|
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd--------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMS--------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCG--------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred CCcccCCCceEeEEeCcCCCccH--------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 44433 34467888888877752 222335677777888887776544311 113332 35777777777
Q ss_pred CCC
Q 041975 179 LKL 181 (543)
Q Consensus 179 ~~~ 181 (543)
..+
T Consensus 125 ~~I 127 (176)
T 3e4g_A 125 GNV 127 (176)
T ss_dssp TTC
T ss_pred CcC
Confidence 543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=6.6e-06 Score=79.15 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=30.6
Q ss_pred CCCCCcEEEccCcCCCCCCCCCCCCc-cccCCCCCeEeccCCCCCcCCccCCCCC--CCCeEecCCCCCc
Q 041975 213 CLNRVELLSFAGCKGRPPQMGLKLPI-LFQSQILENLSLINCNIIELPESLGQLP--SLKYLNLEENNFE 279 (543)
Q Consensus 213 ~l~~L~~L~L~~~~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~Ls~n~l~ 279 (543)
++++|+.|+|++|.+... ..+|. +..+++|+.|+|++|+++++. .+..+. +|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l---~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRL---DDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCC---GGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCC---ccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 455666666666665441 01222 334555555555555555531 122222 5555555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.40 E-value=0.00043 Score=63.01 Aligned_cols=60 Identities=13% Similarity=-0.004 Sum_probs=31.7
Q ss_pred ccCCCCCeEeccCCCCCc-----CCccCCCCCCCCeEecCCC---CCc-----cCCccccCCCCCCEEecccc
Q 041975 240 FQSQILENLSLINCNIIE-----LPESLGQLPSLKYLNLEEN---NFE-----KIPSNIKQVSKLSLLILDNW 299 (543)
Q Consensus 240 ~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n---~l~-----~lp~~l~~l~~L~~L~L~~~ 299 (543)
..-+.|++|+|++|.|.. +-..+..-+.|++|+|++| .+. .+...+..-+.|+.|+++.|
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 344556666666666654 4445555566777777644 222 12333444455666655543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0071 Score=51.11 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=40.8
Q ss_pred CeEeccCCCCC--cCCccCCCCCCCCeEecCCCCCccCCcc-ccCCCCCCEEecccccc
Q 041975 246 ENLSLINCNII--ELPESLGQLPSLKYLNLEENNFEKIPSN-IKQVSKLSLLILDNWKR 301 (543)
Q Consensus 246 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~~ 301 (543)
..++.++++++ .+|..+. ++|++|+|++|+|+.+|.. +..+++|+.|+|++|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36777777887 7776543 4688888988888888754 57788888888888853
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.18 E-value=0.0023 Score=58.22 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=59.2
Q ss_pred CCCCCCcEEEccCc-CCCCCCCCCCCCc-cccCCCCCeEeccCCCCCc-----CCccCCCCCCCCeEecCCCCCc-----
Q 041975 212 SCLNRVELLSFAGC-KGRPPQMGLKLPI-LFQSQILENLSLINCNIIE-----LPESLGQLPSLKYLNLEENNFE----- 279 (543)
Q Consensus 212 ~~l~~L~~L~L~~~-~~~~~~~~~~lp~-~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~----- 279 (543)
.+-+.|+.|+|+++ .+.... ...+.. +..-..|+.|+|++|.+.+ +-..+..-+.|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~g-a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKER-IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHH-HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHH-HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34566777777664 322100 000111 4556788999999998875 4455666789999999999987
Q ss_pred cCCccccCCCCCCEEeccccc
Q 041975 280 KIPSNIKQVSKLSLLILDNWK 300 (543)
Q Consensus 280 ~lp~~l~~l~~L~~L~L~~~~ 300 (543)
.+-..+..-..|+.|+|++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 445567777889999998763
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.04 E-value=0.075 Score=44.66 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=27.2
Q ss_pred EEEECCCCCC--CCCCCCCCCCeeEEEcCCCCcccccccccccccCc-cccCCcCCcEEecccc
Q 041975 94 YFHWDGYPLK--TLPSKISPEHLVSLEMPNSNIEQLWNDVQLEELPS-SIGNLSRLVTLDLRKC 154 (543)
Q Consensus 94 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~l~~l~~~~~l~~lp~-~l~~l~~L~~L~L~~~ 154 (543)
.++.+++.++ .+|..+ ..+|++|+|++|+|+ .+|. .+..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~---------~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLT---------ALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCS---------SCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCC---------ccChhhhhhccccCEEEecCC
Confidence 4555566665 666432 234666666666664 2322 3445555566655555
Done!