BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041976
(901 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 178/629 (28%), Positives = 252/629 (40%), Gaps = 116/629 (18%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
+S V L +LD+SSN+F IP + + + + D+S N+L+G S L L+ ++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 345 NNSFSGTIPSWLFSLPL--LEYVRLSDNQLSGHIDEFPS---KSLQNIYLSNNRLQGSIP 399
+N F G IP LPL L+Y+ L++N+ +G I +F S +L + LS N G++P
Sbjct: 256 SNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
L L L SNNFSG K+ LK L LS N S
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS--------------G 357
Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
L S N+SA L LDLS N G I +
Sbjct: 358 ELPESLTNLSA---------SLLTLDLSSNNFSGPI---------------------LPN 387
Query: 520 MKQIPWKNLGYLDLRSNLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDVLDLS 579
+ Q P L L L+ NN FTG+I ++ + L L LS
Sbjct: 388 LCQNPKNTLQELYLQ---------------------NNGFTGKIPPTLSNCSELVSLHLS 426
Query: 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIPQS 639
N L+GTIP +G+ S L L L N L G IP G IP
Sbjct: 427 FNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKE--SFPKLR 697
L NCT + + + N ++ P W+G L L +L L +N F G++ P E L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI----PAELGDCRSLI 541
Query: 698 ILDLSINNFSGYLPER-FLENLNAMRNVSADEGKLRY-------LGEEYYQDSVVVTLKG 749
LDL+ N F+G +P F ++ N A + RY + +E + ++ +G
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHGAGNLLEFQG 598
Query: 750 TEIEMQKILTV------------------------FTTIDFSSNGFDGEISQVIGKXXXX 785
E L+ +D S N G I + IG
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 786 XXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDG 845
+G IP +G+L L LDLSSN + G+IP+ +N L G
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 846 PIPHGPQFNTFQEDSYIGNLGLCGFPLTK 874
PIP QF TF ++ N GLCG+PL +
Sbjct: 719 PIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 166/379 (43%), Gaps = 77/379 (20%)
Query: 232 ELPDSIGNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQL 291
++P ++ N L L L ++ G +P+S G IP L + L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 292 TYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG 350
L L N GEIP + N T +++ LSNN+L G IP RL+NL +++L+NNSFSG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 351 TIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTD 410
IP+ L D +SL + L+ N G+IP+++F+
Sbjct: 529 NIPA-----------ELGD-----------CRSLIWLDLNTNLFNGTIPAAMFK------ 560
Query: 411 LQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL-----SLGNTFKIDS-PFPKFSYLSL- 463
IA ++ K +Y+Y+ ++ + GN + + + LS
Sbjct: 561 ------QSGKIAANFIAGK----RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 464 SACNISAF-------PRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
+ CNI++ P F + +LD+S N + G IP I + L +NL HN
Sbjct: 611 NPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSM--PYLFILNLGHND 667
Query: 517 ITKMKQIPWKNLGYLDLRS-NLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDV 575
I+ IP +G DLR N+L +S+N+ G I ++ + L
Sbjct: 668 IS--GSIP-DEVG--DLRGLNILD--------------LSSNKLDGRIPQAMSALTMLTE 708
Query: 576 LDLSNNRLNGTIPECIGNF 594
+DLSNN L+G IPE +G F
Sbjct: 709 IDLSNNNLSGPIPE-MGQF 726
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 197 QMIRLSQNPSLAGKFPAN-------NWTSP-------IEYLDVSETSFSE-LPDSIGNLK 241
Q IR Q L+ + P N TSP + +LD+S S +P IG++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 242 LLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQLTYLDLSSNSF 301
L L LG++ G +P G IP ++S L LT +DLS+N+
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 302 FGEIPDI 308
G IP++
Sbjct: 717 SGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 178/629 (28%), Positives = 252/629 (40%), Gaps = 116/629 (18%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
+S V L +LD+SSN+F IP + + + + D+S N+L+G S L L+ ++
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 345 NNSFSGTIPSWLFSLPL--LEYVRLSDNQLSGHIDEFPS---KSLQNIYLSNNRLQGSIP 399
+N F G IP LPL L+Y+ L++N+ +G I +F S +L + LS N G++P
Sbjct: 253 SNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
L L L SNNFSG K+ LK L LS N S
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS--------------G 354
Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
L S N+SA L LDLS N G I +
Sbjct: 355 ELPESLTNLSA---------SLLTLDLSSNNFSGPI---------------------LPN 384
Query: 520 MKQIPWKNLGYLDLRSNLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDVLDLS 579
+ Q P L L L+ NN FTG+I ++ + L L LS
Sbjct: 385 LCQNPKNTLQELYLQ---------------------NNGFTGKIPPTLSNCSELVSLHLS 423
Query: 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIPQS 639
N L+GTIP +G+ S L L L N L G IP G IP
Sbjct: 424 FNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKE--SFPKLR 697
L NCT + + + N ++ P W+G L L +L L +N F G++ P E L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI----PAELGDCRSLI 538
Query: 698 ILDLSINNFSGYLPER-FLENLNAMRNVSADEGKLRY-------LGEEYYQDSVVVTLKG 749
LDL+ N F+G +P F ++ N A + RY + +E + ++ +G
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHGAGNLLEFQG 595
Query: 750 TEIEMQKILTV------------------------FTTIDFSSNGFDGEISQVIGKXXXX 785
E L+ +D S N G I + IG
Sbjct: 596 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 655
Query: 786 XXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDG 845
+G IP +G+L L LDLSSN + G+IP+ +N L G
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 846 PIPHGPQFNTFQEDSYIGNLGLCGFPLTK 874
PIP QF TF ++ N GLCG+PL +
Sbjct: 716 PIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 166/379 (43%), Gaps = 77/379 (20%)
Query: 232 ELPDSIGNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQL 291
++P ++ N L L L ++ G +P+S G IP L + L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 292 TYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG 350
L L N GEIP + N T +++ LSNN+L G IP RL+NL +++L+NNSFSG
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 351 TIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTD 410
IP+ L D +SL + L+ N G+IP+++F+
Sbjct: 526 NIPA-----------ELGD-----------CRSLIWLDLNTNLFNGTIPAAMFK------ 557
Query: 411 LQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL-----SLGNTFKIDS-PFPKFSYLSL- 463
IA ++ K +Y+Y+ ++ + GN + + + LS
Sbjct: 558 ------QSGKIAANFIAGK----RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 464 SACNISAF-------PRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
+ CNI++ P F + +LD+S N + G IP I + L +NL HN
Sbjct: 608 NPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSM--PYLFILNLGHND 664
Query: 517 ITKMKQIPWKNLGYLDLRS-NLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDV 575
I+ IP +G DLR N+L +S+N+ G I ++ + L
Sbjct: 665 IS--GSIP-DEVG--DLRGLNILD--------------LSSNKLDGRIPQAMSALTMLTE 705
Query: 576 LDLSNNRLNGTIPECIGNF 594
+DLSNN L+G IPE +G F
Sbjct: 706 IDLSNNNLSGPIPE-MGQF 723
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 34/175 (19%)
Query: 197 QMIRLSQNPSLAGKFPAN-------NWTSP-------IEYLDVSETSFSE-LPDSIGNLK 241
Q IR Q L+ + P N TSP + +LD+S S +P IG++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 242 LLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQLTYLDLSSNSF 301
L L LG++ G +P G IP ++S L LT +DLS+N+
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 302 FGEIPDI--FNLTQVSFFDLSNNQLAG-PIP---------------SHGSRLQNL 338
G IP++ F + F L+N L G P+P SHG RL+NL
Sbjct: 714 SGPIPEMGQFETFPPAKF-LNNPGLCGYPLPRCDPSNADGYAHHQRSHGRRLENL 767
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 32/227 (14%)
Query: 281 IPSSLSNLVQLTYLDLSS-NSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL 338
IPSSL+NL L +L + N+ G IP I LTQ+ + +++ ++G IP S+++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI-DEFP--SKSLQNIYLSNNRLQ 395
V + + N+ SGT+P + SLP L + N++SG I D + SK ++ +S NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPF 455
G IP + F +NL + L N G A +F + ++L+ NSL+
Sbjct: 188 GKIPPT-FANLNLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAF---------- 235
Query: 456 PKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
+ LS L+ LDL N+I G +P ++++
Sbjct: 236 -DLGKVGLS--------------KNLNGLDLRNNRIYGTLPQGLTQL 267
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 25/192 (13%)
Query: 212 PANNWTSPIEYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXX 270
PA + + YL ++ T+ S +PD + +K L L Y+ G +P S
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 271 XXXXXXFSGHIPSSLSNLVQL-TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIP 329
SG IP S + +L T + +S N G+IP F ++F DLS N L G
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214
Query: 330 S-----------HGSR------------LQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVR 366
H ++ +NL + L NN GT+P L L L +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 367 LSDNQLSGHIDE 378
+S N L G I +
Sbjct: 275 VSFNNLCGEIPQ 286
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 90/246 (36%), Gaps = 13/246 (5%)
Query: 636 IPQSLVNCTKVEVLDIGNIK-INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694
IP SL N + L IG I + P + L +L L + G++ +F
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIK 125
Query: 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD--SVVVTLKGTEI 752
L LD S N SG LP + +L + ++ D ++ + Y + ++ +
Sbjct: 126 TLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 753 EMQ-KILTVFTT-----IDFSSNGFDGEISQVIGKXXXXXXXXXXXXXFTGQIPSSLGNL 806
+ KI F +D S N +G+ S + G + +G
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243
Query: 807 AKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDGPIPHGPQFNTFQEDSYIGNLG 866
L LDL +N + G +P+ N L G IP G F +Y N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 867 LCGFPL 872
LCG PL
Sbjct: 304 LCGSPL 309
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 101/268 (37%), Gaps = 66/268 (24%)
Query: 455 FPKFSYLSLSACN--ISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNL 512
P ++L + N + P + +L YL ++ + G IP ++S+I
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI---------- 124
Query: 513 SHNFITKMKQIPWKNLGYLDLRSNLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIA 572
K L LD S N +G + SI +
Sbjct: 125 -------------KTLVTLDF---------------------SYNALSGTLPPSISSLPN 150
Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXX 632
L + NR++G IP+ G+FS + + + NRL G IP TFA
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Query: 633 GGA--IPQSLVNCTKVEV------LDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV 684
G A + S N K+ + D+G + ++ L L LR+N+ +G++
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK----------NLNGLDLRNNRIYGTL 260
Query: 685 REFEPKESFPKLRILDLSINNFSGYLPE 712
+ + F L L++S NN G +P+
Sbjct: 261 PQGLTQLKF--LHSLNVSFNNLCGEIPQ 286
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 27/129 (20%)
Query: 317 FDLSNNQLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGH 375
DL +N+L+ +PS RL L L+ LN+N T+P+ +F
Sbjct: 42 LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK----------------- 82
Query: 376 IDEFPSKSLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
K+L+ +++++N+LQ ++P +F +LVNL +L+LD N + P +F L KL
Sbjct: 83 ----ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLT 136
Query: 435 YLYLSHNSL 443
YL L +N L
Sbjct: 137 YLSLGYNEL 145
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
Query: 281 IPS-SLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNL 338
+PS + L +L L L+ N IF L + +++N+L +L NL
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRL 394
+RL+ N P SL L Y+ L N+L G D+ S L+ + L NN+L
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS--LKELRLYNNQL 169
Query: 395 QGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
+ +P F+ L L L+LD+N + E F L KLK L L N
Sbjct: 170 K-RVPEGAFDKLTELKTLKLDNNQLKRVPEG-AFDSLEKLKMLQLQEN 215
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 9/152 (5%)
Query: 296 LSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW 355
+++NS + I L V + L N+L S L NL + L N ++P+
Sbjct: 47 IANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNG 103
Query: 356 LF-SLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFE-LVNLTDL 411
+F L L+ + L +NQL D K +L +YL +N+LQ S+P +F+ L NLT L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRL 162
Query: 412 QLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
LD+N + E +F KL +LK L L+ N L
Sbjct: 163 DLDNNQLQSLPEG-VFDKLTQLKQLSLNDNQL 193
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 280 HIPSSLSNLVQLTYLDLSSNSF-----------------------FGEIPD-IFN-LTQV 314
H S+L L LTYL L+ N +PD +F+ LT +
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLS 373
++ L +NQL +L NL + L+NN ++P +F L L+ + L+DNQL
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK 194
Query: 374 GHIDEFPSK--SLQNIYLSNN 392
D + SL +I+L NN
Sbjct: 195 SVPDGVFDRLTSLTHIWLLNN 215
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 11/202 (5%)
Query: 280 HIPS-SLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNN-QLAGPIPSHGSRLQ 336
H+P+ S LT L L SN F L + DLS+N QL P+ L
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRL 394
L + L+ P L L+Y+ L DN L D+ +L +++L NR+
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 395 QGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454
S+P F ++ D L N P+ F L +L LYL N+LS T + +P
Sbjct: 165 S-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-AP 222
Query: 455 FPKFSYLSLS----ACNISAFP 472
YL L+ C+ A P
Sbjct: 223 LRALQYLRLNDNPWVCDCRARP 244
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 44/223 (19%)
Query: 331 HGSRL-----------QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF 379
HG+R+ +NL ++ L++N + + L LLE + LSDN
Sbjct: 39 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-------- 90
Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS 439
+L+ P++ L L L LD + P +F L L+YLYL
Sbjct: 91 -------------QLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQ 136
Query: 440 HNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFP-RFLRTQDELSYLDLSENKIDGQIP 496
N+L +TF+ ++L L IS+ P R R L L L +N++ P
Sbjct: 137 DNALQALPDDTFR---DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Query: 497 SWISEIGKDSLSYV---NLSHNFITKMKQIPWKNLGYLDLRSN 536
++G+ Y+ NLS + P + L YL L N
Sbjct: 194 HAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDN 234
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELV-NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438
P+ S Q I+L NR+ +P++ F NLT L L SN + I + F L L+ L L
Sbjct: 30 PAAS-QRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDL 86
Query: 439 SHNSLSLGNTFKIDSPFPKFSYLSLSACNISAF-PRFLRTQDELSYLDLSENKIDGQIPS 497
S N+ + L L C + P R L YL L +N +
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 498 WISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLD 532
++G +L+++ L N I+ + + ++ L LD
Sbjct: 147 TFRDLG--NLTHLFLHGNRISSVPERAFRGLHSLD 179
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 11/202 (5%)
Query: 280 HIPS-SLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNN-QLAGPIPSHGSRLQ 336
H+P+ S LT L L SN F L + DLS+N QL P+ L
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRL 394
L + L+ P L L+Y+ L DN L D+ +L +++L NR+
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 395 QGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454
S+P F ++ D L N P+ F L +L LYL N+LS T + +P
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-AP 223
Query: 455 FPKFSYLSLS----ACNISAFP 472
YL L+ C+ A P
Sbjct: 224 LRALQYLRLNDNPWVCDCRARP 245
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 44/223 (19%)
Query: 331 HGSRL-----------QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF 379
HG+R+ +NL ++ L++N + + L LLE + LSDN
Sbjct: 40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-------- 91
Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS 439
+L+ P++ L L L LD + P +F L L+YLYL
Sbjct: 92 -------------QLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQ 137
Query: 440 HNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFP-RFLRTQDELSYLDLSENKIDGQIP 496
N+L +TF+ ++L L IS+ P R R L L L +N++ P
Sbjct: 138 DNALQALPDDTFR---DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 497 SWISEIGKDSLSYV---NLSHNFITKMKQIPWKNLGYLDLRSN 536
++G+ Y+ NLS + P + L YL L N
Sbjct: 195 HAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDN 235
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELV-NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438
P+ S Q I+L NR+ +P++ F NLT L L SN + I + F L L+ L L
Sbjct: 31 PAAS-QRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDL 87
Query: 439 SHNSLSLGNTFKIDSPFPKFSYLSLSACNISAF-PRFLRTQDELSYLDLSENKIDGQIPS 497
S N+ + L L C + P R L YL L +N +
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 498 WISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLD 532
++G +L+++ L N I+ + + ++ L LD
Sbjct: 148 TFRDLG--NLTHLFLHGNRISSVPERAFRGLHSLD 180
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 293 YLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTI 352
YL L N +I + LT +++ L+ NQL +L NL + L N ++
Sbjct: 67 YLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SL 124
Query: 353 PSWLF-SLPLLEYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LV 406
P +F L L Y+ L+ NQL G D+ +L + LS N+LQ S+P +F+ L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL--TNLTELDLSYNQLQ-SLPEGVFDKLT 181
Query: 407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLS 462
L DL+L N + + +F +L L+Y++L N D P YLS
Sbjct: 182 QLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPW--------DCTCPGIRYLS 228
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 296 LSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW 355
+++NS + I L V + L N+L S L NL + L N ++P+
Sbjct: 47 IANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNG 103
Query: 356 LF-SLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFE-LVNLTDL 411
+F L L+ + L +NQL D K +L + L++N+LQ S+P +F+ L NLT+L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTEL 162
Query: 412 QLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
L N + E +F KL +LK L L N L
Sbjct: 163 DLSYNQLQSLPEG-VFDKLTQLKDLRLYQNQL 193
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNN 346
L LTYL+L+ N +F+ LT ++ DLS NQL +L L +RL N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 347 SFSGTIPSWLFS-LPLLEYVRLSDN 370
++P +F L L+Y+ L DN
Sbjct: 192 QLK-SVPDGVFDRLTSLQYIWLHDN 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 313 QVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQ 371
Q ++ DL N L L +L + L N ++P+ +F+ L L Y+ LS NQ
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87
Query: 372 L----SGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYM 426
L +G D+ L+ + L+ N+LQ S+P +F+ L L DL+L N + + +
Sbjct: 88 LQSLPNGVFDKL--TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDG-V 143
Query: 427 FAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLS 462
F +L L+Y++L N D P YLS
Sbjct: 144 FDRLTSLQYIWLHDNPW--------DCTCPGIRYLS 171
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNN 346
L LT L L N +FN LT +++ +LS NQL +L L + LN N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 347 SFSGTIPSWLF-SLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIP 399
++P +F L L+ +RL NQL D + SLQ I+L +N + P
Sbjct: 111 QLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 44/223 (19%)
Query: 331 HGSRL-----------QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF 379
HG+R+ +NL ++ L++N+ +G + L LLE + LSDN +D
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD-- 96
Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS 439
P++ L +L L LD + P +F L L+YLYL
Sbjct: 97 -------------------PTTFRGLGHLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQ 136
Query: 440 HNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPRF-LRTQDELSYLDLSENKIDGQIP 496
N+L NTF+ ++L L I + P R L L L +N + P
Sbjct: 137 DNNLQALPDNTFR---DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 497 SWISEIGKDSLSYV---NLSHNFITKMKQIPWKNLGYLDLRSN 536
++G+ Y+ NLS + +P ++L YL L N
Sbjct: 194 HAFRDLGRLMTLYLFANNLS--MLPAEVLVPLRSLQYLRLNDN 234
Score = 35.8 bits (81), Expect = 0.097, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 383 SLQNIYLSNNRLQGSIPSSIFELV-NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
S Q I+L NR+ +P++ F+ NLT L L SN +GI + F L L+ L LS N
Sbjct: 32 SSQRIFLHGNRIS-YVPAASFQSCRNLTILWLHSNALAGI-DAAAFTGLTLLEQLDLSDN 89
Query: 442 SLSLGNTFKIDSP-----FPKFSYLSLSACNISAF-PRFLRTQDELSYLDLSENKIDGQI 495
+ ++ P L L C + P R L YL L +N +
Sbjct: 90 A-----QLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALP 144
Query: 496 PSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLD 532
+ ++G +L+++ L N I + + ++ L LD
Sbjct: 145 DNTFRDLG--NLTHLFLHGNRIPSVPEHAFRGLHSLD 179
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI 341
++ L +LT+L+L N +F+ LT++ L+NNQLA L L +
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 342 RLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRLQG 396
L N ++PS +F L L+ +RL+ NQL +G D+ + LQ + LS N+LQ
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLSLSTNQLQ- 168
Query: 397 SIPSSIFE-LVNLTDLQLDSNNF 418
S+P F+ L L + L N F
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLS-- 373
DL + LA + L L + L+ N T+ + +F L L + L++NQL+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98
Query: 374 --GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKL 430
G D L +YL N+L+ S+PS +F+ L L +L+L++N I F KL
Sbjct: 99 PLGVFDHLTQ--LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKL 154
Query: 431 IKLKYLYLSHNSL 443
L+ L LS N L
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 287 NLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345
+L +L L L++N +F+ LTQ+ L NQL RL L +RLN
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 346 NSFSGTIPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGS 397
N +IP+ F L L+ + LS NQL G D LQ I L N+ S
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG--KLQTITLFGNQFDCS 194
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI 341
++ L +LT+L+L N +F+ LT++ L+NNQLA L L +
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 342 RLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRLQG 396
L N ++PS +F L L+ +RL+ NQL +G D+ + LQ + LS N+LQ
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLSLSTNQLQ- 168
Query: 397 SIPSSIFE-LVNLTDLQLDSNNF 418
S+P F+ L L + L N F
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLS-- 373
DL + LA + L L + L+ N T+ + +F L L + L++NQL+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98
Query: 374 --GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKL 430
G D L +YL N+L+ S+PS +F+ L L +L+L++N I F KL
Sbjct: 99 PLGVFDHLTQ--LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKL 154
Query: 431 IKLKYLYLSHNSL 443
L+ L LS N L
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 287 NLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345
+L +L L L++N +F+ LTQ+ L NQL RL L +RLN
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 346 NSFSGTIPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGSIPS 400
N +IP+ F L L+ + LS NQL G D LQ I L N+ S
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG--KLQTITLFGNQFDCSRCE 197
Query: 401 SIF 403
+++
Sbjct: 198 TLY 200
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 21/139 (15%)
Query: 328 IPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSGHIDEFPSK--SL 384
IPS +RL+ L +N ++P +F L L + LS NQ+ D K L
Sbjct: 26 IPSSATRLE------LESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 385 QNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
+YL N+LQ S+P+ +F+ L L +L LD+N + + +F +L L+ ++L N
Sbjct: 79 TILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPW 136
Query: 444 SLGNTFKIDSPFPKFSYLS 462
D P+ YLS
Sbjct: 137 --------DCSCPRIDYLS 147
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
IPSS T L+L SN +F+ LTQ++ LS NQ+ +L L
Sbjct: 26 IPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79
Query: 340 LIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQG 396
++ L+ N ++P+ +F L L+ + L NQL D + SLQ I+L N
Sbjct: 80 ILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138
Query: 397 SIP 399
S P
Sbjct: 139 SCP 141
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHG--SRLQNLVLIRLNNNSFSGTIPSWLFSLPL 361
EIP L L++N+L G I S G RL +LV + L N +G P+
Sbjct: 22 EIPRDIPLHTTELL-LNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 362 LEYVRLSDNQLSGHIDEFPSK------SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDS 415
++ ++L +N+ I E +K L+ + L +N++ +P S L +LT L L S
Sbjct: 80 IQELQLGENK----IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135
Query: 416 NNFSGIAEPYMFAKLIKLKYL 436
N F+ FA+ ++ K L
Sbjct: 136 NPFNCNCHLAWFAEWLRKKSL 156
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 117/268 (43%), Gaps = 36/268 (13%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L+NL Q+ + SN+ +I + NLT++ ++NNQ+A P + L NL + L
Sbjct: 62 LNNLTQINF----SNNQLTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLF 115
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
NN + P L +L L + LS N +S SLQ + S+N++ P +
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 405 LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLS 464
L L L + SN S I+ + AKL L+ L ++N +S I LSL+
Sbjct: 172 LTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLN 225
Query: 465 ACNISAFPRFLRTQDELSYLDLSENKIDGQIP--------------SWISEI----GKDS 506
+ L + L+ LDL+ N+I P + IS I G +
Sbjct: 226 GNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 284
Query: 507 LSYVNLSHNFITKMKQIP-WKNLGYLDL 533
L+ + L+ N + + I KNL YL L
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTL 312
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 40/261 (15%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L NL +L + L +N+ +I + NLT ++ L NNQ+ P L NL + L+
Sbjct: 81 LKNLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSG-----------HIDEFPSK----------- 382
+N+ S S L L L+ + S NQ++ +D +K
Sbjct: 138 SNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
+L+++ +NN++ P I L NL +L L+ N I A L L L L++N
Sbjct: 196 NLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQ 250
Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
+S S K + L L A IS L L+ L+L+EN+++ P IS +
Sbjct: 251 IS---NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNL 304
Query: 503 GKDSLSYVNLSHNFITKMKQI 523
+L+Y+ L N I+ + +
Sbjct: 305 K--NLTYLTLYFNNISDISPV 323
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347
L L L L+ N +I + +LT ++ DL+NNQ++ P G L L ++L N
Sbjct: 216 LTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQ 272
Query: 348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN 407
S P L L L + L++NQL S I L N
Sbjct: 273 ISNISP--LAGLTALTNLELNENQLEDI------------------------SPISNLKN 306
Query: 408 LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
LT L L NN S I+ + L KL+ L+ S+N +S
Sbjct: 307 LTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVS 340
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 117/268 (43%), Gaps = 36/268 (13%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L+NL Q+ + SN+ +I + NLT++ ++NNQ+A P + L NL + L
Sbjct: 62 LNNLTQINF----SNNQLTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLF 115
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
NN + P L +L L + LS N +S SLQ + S+N++ P +
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 405 LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLS 464
L L L + SN S I+ + AKL L+ L ++N +S I LSL+
Sbjct: 172 LTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLN 225
Query: 465 ACNISAFPRFLRTQDELSYLDLSENKIDGQIP--------------SWISEI----GKDS 506
+ L + L+ LDL+ N+I P + IS I G +
Sbjct: 226 GNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 284
Query: 507 LSYVNLSHNFITKMKQIP-WKNLGYLDL 533
L+ + L+ N + + I KNL YL L
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTL 312
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 36/259 (13%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L NL +L + L +N+ +I + NLT ++ L NNQ+ P L NL + L+
Sbjct: 81 LKNLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 345 NNSFSG--------------------TIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSL 384
+N+ S T L +L LE + +S N++S +L
Sbjct: 138 SNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 385 QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
+++ +NN++ P I L NL +L L+ N I A L L L L++N +S
Sbjct: 198 ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQIS 252
Query: 445 LGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK 504
S K + L L A IS L L+ L+L+EN+++ P IS +
Sbjct: 253 ---NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLK- 305
Query: 505 DSLSYVNLSHNFITKMKQI 523
+L+Y+ L N I+ + +
Sbjct: 306 -NLTYLTLYFNNISDISPV 323
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347
L L L L+ N +I + +LT ++ DL+NNQ++ P G L L ++L N
Sbjct: 216 LTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQ 272
Query: 348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI-YLSNNRLQGSIPSSIFELV 406
S P L L L + L++NQL D P +L+N+ YL+ L + S I +
Sbjct: 273 ISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLT---LYFNNISDISPVS 324
Query: 407 NLTDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
+LT LQ +N S ++ A L + +L HN +S
Sbjct: 325 SLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQIS 362
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 117/268 (43%), Gaps = 36/268 (13%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L+NL Q+ + SN+ +I + NLT++ ++NNQ+A P + L NL + L
Sbjct: 62 LNNLTQINF----SNNQLTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLF 115
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
NN + P L +L L + LS N +S SLQ + S+N++ P +
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LAN 171
Query: 405 LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLS 464
L L L + SN S I+ + AKL L+ L ++N +S I LSL+
Sbjct: 172 LTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLN 225
Query: 465 ACNISAFPRFLRTQDELSYLDLSENKIDGQIP--------------SWISEI----GKDS 506
+ L + L+ LDL+ N+I P + IS I G +
Sbjct: 226 GNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 284
Query: 507 LSYVNLSHNFITKMKQIP-WKNLGYLDL 533
L+ + L+ N + + I KNL YL L
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTL 312
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 40/261 (15%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L NL +L + L +N+ +I + NLT ++ L NNQ+ P L NL + L+
Sbjct: 81 LKNLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSG-----------HIDEFPSK----------- 382
+N+ S S L L L+ + S NQ++ +D +K
Sbjct: 138 SNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
+L+++ +NN++ P I L NL +L L+ N I A L L L L++N
Sbjct: 196 NLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQ 250
Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
+S S K + L L A IS L L+ L+L+EN+++ P IS +
Sbjct: 251 IS---NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNL 304
Query: 503 GKDSLSYVNLSHNFITKMKQI 523
+L+Y+ L N I+ + +
Sbjct: 305 K--NLTYLTLYFNNISDISPV 323
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347
L L L L+ N +I + +LT ++ DL+NNQ++ P G L L ++L N
Sbjct: 216 LTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQ 272
Query: 348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI-YLSNNRLQGSIPSSIFELV 406
S P L L L + L++NQL D P +L+N+ YL+ L + S I +
Sbjct: 273 ISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLT---LYFNNISDISPVS 324
Query: 407 NLTDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
+LT LQ +N S ++ A L + +L HN +S
Sbjct: 325 SLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQIS 362
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 16/184 (8%)
Query: 359 LPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLD 414
LP LE++ LS N LS +F + SL+ + LS N + ++ S+ L L L
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 428
Query: 415 SNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAF--- 471
+N ++E +F L L YL +SH + + F S L + ++F
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 472 --PRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG 529
P L++LDLS+ +++ P+ + + SL +N+SHN + P+K L
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLN 542
Query: 530 YLDL 533
L +
Sbjct: 543 SLQV 546
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 288 LVQLTYLDLSSNSFFGE-IPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345
L L L ++ NSF +PDIF L ++F DLS QL P+ + L +L ++ +++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 346 NSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL 405
N+F FSL Y L+ Q+ + SL +I S + PSS
Sbjct: 528 NNF--------FSLDTFPYKCLNSLQVLDY-------SLNHIMTSKKQELQHFPSS---- 568
Query: 406 VNLTDLQLDSNNFSGIAEPYMFAKLIK 432
L L L N+F+ E F + IK
Sbjct: 569 --LAFLNLTQNDFACTCEHQSFLQWIK 593
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342
+ LSNL Q+ YLDL+ I + LT + + + NNQ+ P + L L +R
Sbjct: 132 AGLSNL-QVLYLDLNQ---ITNISPLAGLTNLQYLSIGNNQVNDLTPL--ANLSKLTTLR 185
Query: 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYL 389
++N S P L SLP L V L DNQ+S D P +L N+++
Sbjct: 186 ADDNKISDISP--LASLPNLIEVHLKDNQIS---DVSPLANLSNLFI 227
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRIL 699
L T ++ L IGN ++ND P L NL +L L NK + + P S P L +
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNK----ISDISPLASLPNLIEV 206
Query: 700 DLSINNFSGYLPERFLENL 718
L N S P L NL
Sbjct: 207 HLKDNQISDVSPLANLSNL 225
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 32/160 (20%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L NL ++T L+LS N + I L + DL++ Q+ P G L NL ++ L+
Sbjct: 87 LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDVTPLAG--LSNLQVLYLD 143
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
N + P L L L+Y+ + +NQ++ D P +
Sbjct: 144 LNQITNISP--LAGLTNLQYLSIGNNQVN---DLTP---------------------LAN 177
Query: 405 LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
L LT L+ D N S I+ A L L ++L N +S
Sbjct: 178 LSKLTTLRADDNKISDISP---LASLPNLIEVHLKDNQIS 214
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 24/216 (11%)
Query: 328 IPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSK 382
IPS +RL+ L +N ++P +F L L + LS N LS +F +
Sbjct: 26 IPSSATRLE------LESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
SL+ + LS N + ++ S+ L L L +N ++E +F L L YL +SH
Sbjct: 79 SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAF-----PRFLRTQDELSYLDLSENKIDGQIPS 497
+ + F S L + ++F P L++LDLS+ +++ P+
Sbjct: 138 TRVA----FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 498 WISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDL 533
+ + SL +N+SHN + P+K L L +
Sbjct: 194 AFNSLS--SLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 288 LVQLTYLDLSSNSFFGE-IPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345
L L L ++ NSF +PDIF L ++F DLS QL P+ + L +L ++ +++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 346 NSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL 405
N+F FSL Y L+ Q+ + SL +I S + PSS
Sbjct: 209 NNF--------FSLDTFPYKCLNSLQVLDY-------SLNHIMTSKKQELQHFPSS---- 249
Query: 406 VNLTDLQLDSNNFSGIAEPYMFAKLIK 432
L L L N+F+ E F + IK
Sbjct: 250 --LAFLNLTQNDFACTCEHQSFLQWIK 274
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Query: 314 VSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373
+ DL NN++ L+NL + L NN S P L LE + LS NQL
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 374 GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN-LTDLQLDSNNF--SGIAEPYMFAKL 430
++ P K+LQ + + N + + S+F +N + ++L +N SGI E F +
Sbjct: 114 ELPEKMP-KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAFQGM 170
Query: 431 IKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAF-PRFLRTQDELSYLDLSEN 489
KL Y+ ++ +++ T P P + L L I+ L+ + L+ L LS N
Sbjct: 171 KKLSYIRIADTNIT---TIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 490 KIDG 493
I
Sbjct: 227 SISA 230
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Query: 314 VSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373
+ DL NN++ L+NL + L NN S P L LE + LS NQL
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 374 GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN-LTDLQLDSNNF--SGIAEPYMFAKL 430
++ P K+LQ + + N + + S+F +N + ++L +N SGI E F +
Sbjct: 114 ELPEKMP-KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAFQGM 170
Query: 431 IKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAF-PRFLRTQDELSYLDLSEN 489
KL Y+ ++ +++ T P P + L L I+ L+ + L+ L LS N
Sbjct: 171 KKLSYIRIADTNIT---TIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 490 KIDG 493
I
Sbjct: 227 SISA 230
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 141/378 (37%), Gaps = 72/378 (19%)
Query: 186 FPINIFHLPNPQMIRLSQNPSLAGKFPANNWTS--------PIEYLDVSETSFSELP--D 235
P + LP Q+I ++ N ++G+ ++W + I+ + + + P
Sbjct: 265 LPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324
Query: 236 SIGNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLV-QLTYL 294
S+ K LG L Y+Q G +PA IP++ Q+ L
Sbjct: 325 SLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI--TEIPANFCGFTEQVENL 382
Query: 295 DLSSNSFFGEIPDIFNLTQVSF---FDLSNNQLAG----------PIPSHGSRLQNLVLI 341
+ N IP+IF+ VS D S N++ P P G N+ I
Sbjct: 383 SFAHNK-LKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGI---NVSSI 438
Query: 342 RLNNNSFSGTIPSWLFSL-PLLEYVRLSDNQLSGHIDEFPSKSL--QNIYLSNNRLQGSI 398
L+NN S P LFS L + L N L+ E P SL +N N L SI
Sbjct: 439 NLSNNQIS-KFPKELFSTGSPLSSINLXGNXLT----EIPKNSLKDENENFKNTYLLTSI 493
Query: 399 PSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKF 458
+L L+D +F PY+ + LS+NS F KF
Sbjct: 494 DLRFNKLTKLSD------DFRATTLPYLVG-------IDLSYNS------------FSKF 528
Query: 459 SYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFIT 518
L++ + F +R Q D N+ + P I+ SL+ + + N I
Sbjct: 529 PTQPLNSSTLKGFG--IRNQ-----RDAQGNRTLREWPEGITLC--PSLTQLQIGSNDIR 579
Query: 519 KMKQIPWKNLGYLDLRSN 536
K+ + N+ LD++ N
Sbjct: 580 KVNEKITPNISVLDIKDN 597
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 106/261 (40%), Gaps = 46/261 (17%)
Query: 282 PSSLSNLVQLTYLDLSSNSF----FGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQN 337
P + +NL L L L SN G + NLT++ D+S N++ + L N
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL---DISENKIVILLDYMFQDLYN 129
Query: 338 LVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGS 397
L + + +N + V +S SG SL+ + L L
Sbjct: 130 LKSLEVGDN----------------DLVYISHRAFSG------LNSLEQLTLEKCNLTSI 167
Query: 398 IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPK 457
++ L L L+L N + I + Y F +L +LK L +SH +D+ P
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPY-------LDTMTPN 219
Query: 458 FSY------LSLSACNISAFPRF-LRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYV 510
Y LS++ CN++A P +R L +L+LS N I S + E+ + L +
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR--LQEI 277
Query: 511 NLSHNFITKMKQIPWKNLGYL 531
L + ++ ++ L YL
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYL 298
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 50/174 (28%)
Query: 312 TQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQ 371
T+ DL N++ LN + F+ S P LE + L++N
Sbjct: 32 TETRLLDLGKNRIKT----------------LNQDEFA--------SFPHLEELELNENI 67
Query: 372 LS----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYM 426
+S G + +L+ + L +NRL+ IP +F L NLT L + N + + YM
Sbjct: 68 VSAVEPGAFNNL--FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD-YM 123
Query: 427 FAKLIKLKYL--------YLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP 472
F L LK L Y+SH + S N+ + L+L CN+++ P
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE---------QLTLEKCNLTSIP 168
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 482 SYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHN---FITKMKQIPWKNLGYLDLRSNLL 538
+ LDLS N + W + +L + LSHN FI+ +P NL YLDL SN L
Sbjct: 42 ALLDLSHNNLSRLRAEW-TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 539 QGXXXXXXXXXXXXXI---SNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECI--GN 593
+ NN ++ D+ L L LS N+++ E I GN
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 594 FSPSLSVLDLRNNRL 608
P L +LDL +N+L
Sbjct: 161 KLPKLMLLDLSSNKL 175
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 367 LSDNQLSGHIDEFPSKSLQNIY---LSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE 423
LS N LS E+ L N++ LS+N L + + NL L L SN+ + E
Sbjct: 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105
Query: 424 PYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQD---- 479
++F+ L L+ L L +N + + + + + L LS IS FP L
Sbjct: 106 -FLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 480 ELSYLDLSENKIDG-------QIPSWI 499
+L LDLS NK+ ++P+W+
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWV 190
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 398 IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPK 457
+P S+ L DL NN S + + +L L L LSHN L+ ++ P P
Sbjct: 33 VPQSLPSYTALLDL--SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPN 89
Query: 458 FSYLSLSACNISAFPRFL 475
YL LS+ ++ FL
Sbjct: 90 LRYLDLSSNHLHTLDEFL 107
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 373 SGHIDEFPS---KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAK 429
SG ++ PS ++++++ LSNNR+ S + VNL L L SN + I E F+
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSS 98
Query: 430 LIKLKYLYLSHNSLS------------------LGNTFKIDSPFPKFSYLS----LSACN 467
L L++L LS+N LS LGN +K FS+L+ L N
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
Query: 468 ISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYV-NLSHNFITKMKQ 522
+ F + R +D L E +ID S + SL + N+SH I MKQ
Sbjct: 159 MDTFTKIQR-KDFAGLTFLEELEIDA---SDLQSYEPKSLKSIQNVSH-LILHMKQ 209
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 367 LSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGI 421
L DNQ++ G D +L+ +YL +N+L G++P +F+ L LT L L +N + +
Sbjct: 47 LHDNQITKLEPGVFDSL--INLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-V 102
Query: 422 AEPYMFAKLIKLKYLYLSHNSLS 444
+F +L+ LK L++ N L+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT 125
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 385 QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
Q +YL +N++ P L+NL +L L SN G +F L +L L L N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL- 100
Query: 445 LGNTFKIDSPFPKFSYLS--LSACN-ISAFPRFLRTQDELSYLDLSENKI 491
T + F + +L CN ++ PR + L++L L +N++
Sbjct: 101 ---TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 282 PSSLSNLVQLTYLDLSSNSFFGEIP-DIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
P +L+ L L L SN G +P +F+ LTQ++ DL NQL + RL +L
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 340 LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNN 392
+ + N + +P + L L ++ L NQL G D SL + YL N
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL--SSLTHAYLFGN 169
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 373 SGHIDEFPS---KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAK 429
SG ++ PS ++++++ LSNNR+ S + VNL L L SN + I E F+
Sbjct: 14 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSS 72
Query: 430 LIKLKYLYLSHNSLS------------------LGNTFKIDSPFPKFSYLS----LSACN 467
L L++L LS+N LS LGN +K FS+L+ L N
Sbjct: 73 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 132
Query: 468 ISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYV-NLSHNFITKMKQ 522
+ F + R +D L E +ID S + SL + N+SH I MKQ
Sbjct: 133 MDTFTKIQR-KDFAGLTFLEELEIDA---SDLQSYEPKSLKSIQNVSH-LILHMKQ 183
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 362 LEYVRLSDNQL-------SGHIDEFPSKSLQNIYLSNNRLQG--SIPSSIFELVNLTDLQ 412
LEY+ LS+N + S D +PS LQ + L N L ++ L NLT++
Sbjct: 336 LEYLDLSENLMVEEYLKNSACEDAWPS--LQTLILRQNHLASLEKTGETLLTLKNLTNID 393
Query: 413 LDSNNFSGIAEPYMFAKLIKLKYLYLS 439
+ N+F + E + + K+KYL LS
Sbjct: 394 ISKNSFHSMPETCQWPE--KMKYLNLS 418
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 56/308 (18%)
Query: 218 SPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXF 277
S ++ LD++ T SELP + L L +L+L ++F S
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA---------------- 321
Query: 278 SGHIPSSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVSFFDLSNNQLAGPIPSHGSRL 335
SN LT+L + N+ E+ + NL + DLS++ + S L
Sbjct: 322 --------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE---TSDCCNL 370
Query: 336 QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQ-LSGHIDEFPS-KSLQNIYLSNNR 393
Q L +L L+ + LS N+ LS + F L+ + L+ R
Sbjct: 371 Q-------------------LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 394 LQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDS 453
L+ S F+ ++L + S++ I+ +F L L++L L N GN K +S
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 454 --PFPKFSYLSLSACNISAFPRFLRTQ-DELSYLDLSENKIDGQIPSWISEIGKDSLSYV 510
+ L LS C++S+ + T ++++DLS N++ S I + Y+
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS---SSIEALSHLKGIYL 528
Query: 511 NLSHNFIT 518
NL+ N I+
Sbjct: 529 NLASNHIS 536
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 474 FLRTQDE-----LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMK-QIPWKN 527
LR DE + YLDL N+ID + ++ D+L ++NL +NFI +K Q+ +
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQVVFAK 192
Query: 528 LGYLDLRSNLL 538
L LDL SN L
Sbjct: 193 LKTLDLSSNKL 203
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 116/271 (42%), Gaps = 43/271 (15%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L+NL Q+ + SN+ +I + NLT++ ++NNQ+A P + L NL + L
Sbjct: 66 LNNLTQINF----SNNQLTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLF 119
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
NN + P L +L L + LS N +S SLQ + N + +
Sbjct: 120 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV------TDLKP 171
Query: 405 LVNLTDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461
L NLT L+ + SN S I+ + AKL L+ L ++N +S I L
Sbjct: 172 LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGI---LTNLDEL 225
Query: 462 SLSACNISAFPRFLRTQDELSYLDLSENKIDGQIP--------------SWISEI----G 503
SL+ + L + L+ LDL+ N+I P + IS I G
Sbjct: 226 SLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 284
Query: 504 KDSLSYVNLSHNFITKMKQIP-WKNLGYLDL 533
+L+ + L+ N + + I KNL YL L
Sbjct: 285 LTALTNLELNENQLEDISPISNLKNLTYLTL 315
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347
L L L L+ N +I + +LT ++ DL+NNQ++ P G L L ++L N
Sbjct: 219 LTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQ 275
Query: 348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI-YLS---NNRLQGSIPSSIF 403
S P L L L + L++NQL D P +L+N+ YL+ NN S S +
Sbjct: 276 ISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNI---SDISPVS 327
Query: 404 ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
L L L +N S ++ A L + +L HN +S
Sbjct: 328 SLTKLQRLFFANNKVSDVSS---LANLTNINWLSAGHNQIS 365
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 33/228 (14%)
Query: 360 PLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG--SIPSSIFELVNLTDLQLDSNN 417
PLLEY+ +S+NQL + S L+ I + NN L+ +P S L + +N
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS------LEFIAAGNNQ 184
Query: 418 FSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRT 477
+ E L L +Y +NSL K L LS +I A L
Sbjct: 185 LEELPE---LQNLPFLTAIYADNNSLK------------KLPDLPLSLESIVAGNNILEE 229
Query: 478 QDELSYLD-LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSN 536
EL L L+ D + + ++ SL +N+ N++T + ++P ++L +LD+ N
Sbjct: 230 LPELQNLPFLTTIYADNNLLKTLPDLPP-SLEALNVRDNYLTDLPELP-QSLTFLDVSEN 287
Query: 537 LLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDI-IALDVLDLSNNRL 583
+ G SN I S+CD+ +L+ L++SNN+L
Sbjct: 288 IFSGLSELPPNLYYLNASSNE------IRSLCDLPPSLEELNVSNNKL 329
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 28/143 (19%)
Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
IPD + ++ +L++NQL P++ +R L ++ NS S P LPLL+
Sbjct: 18 HIPDDLP-SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 364 YVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI-A 422
+ L N+LS Q S + +F NLT+L L SN+ I +
Sbjct: 77 VLNLQHNELS---------------------QISDQTFVF-CTNLTELDLMSNSIHKIKS 114
Query: 423 EPYMFAK-LIKLKYLYLSHNSLS 444
P+ K LIKL LSHN LS
Sbjct: 115 NPFKNQKNLIKLD---LSHNGLS 134
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 116/271 (42%), Gaps = 43/271 (15%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L+NL Q+ + SN+ +I + NLT++ ++NNQ+A P + L NL + L
Sbjct: 67 LNNLTQINF----SNNQLTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLF 120
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
NN + P L +L L + LS N +S SLQ + N + +
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV------TDLKP 172
Query: 405 LVNLTDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461
L NLT L+ + SN S I+ + AKL L+ L ++N +S I L
Sbjct: 173 LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGI---LTNLDEL 226
Query: 462 SLSACNISAFPRFLRTQDELSYLDLSENKIDGQIP--------------SWISEI----G 503
SL+ + L + L+ LDL+ N+I P + IS I G
Sbjct: 227 SLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285
Query: 504 KDSLSYVNLSHNFITKMKQIP-WKNLGYLDL 533
+L+ + L+ N + + I KNL YL L
Sbjct: 286 LTALTNLELNENQLEDISPISNLKNLTYLTL 316
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347
L L L L+ N +I + +LT ++ DL+NNQ++ P G L L ++L N
Sbjct: 220 LTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQ 276
Query: 348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI-YLS---NNRLQGSIPSSIF 403
S P L L L + L++NQL D P +L+N+ YL+ NN S S +
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNI---SDISPVS 328
Query: 404 ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
L L L +N S ++ A L + +L HN +S
Sbjct: 329 SLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQIS 366
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 474 FLRTQDE-----LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMK-QIPWKN 527
LR DE + YLDL N+ID + ++ D+L ++NL +NFI +K Q+ +
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQVVFAK 192
Query: 528 LGYLDLRSNLL 538
L LDL SN L
Sbjct: 193 LKTLDLSSNKL 203
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
T +D S S I TQV + L +NQ+ P RL L + L+NN +
Sbjct: 20 TTVDCSGKSLASVPTGIPTTTQVLY--LYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-V 76
Query: 352 IPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNN 392
+P+ +F L L + L+DNQL G D KSL +I+L NN
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL--KSLTHIWLLNN 120
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
+ Q +YL +N++ P L LT L LD+N + + +F KL +L L L+ N
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 97
Query: 443 L 443
L
Sbjct: 98 L 98
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 43/271 (15%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L+NL Q+ + SN+ +I + NLT++ ++NNQ+A P + L NL + L
Sbjct: 62 LNNLTQINF----SNNQLTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLF 115
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
NN + P L +L L + LS N +S SLQ + G+ + +
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNF------GNQVTDLKP 167
Query: 405 LVNLTDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461
L NLT L+ + SN S I+ + AKL L+ L ++N +S I L
Sbjct: 168 LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGI---LTNLDEL 221
Query: 462 SLSACNISAFPRFLRTQDELSYLDLSENKIDGQIP--------------SWISEI----G 503
SL+ + L + L+ LDL+ N+I P + IS I G
Sbjct: 222 SLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Query: 504 KDSLSYVNLSHNFITKMKQIP-WKNLGYLDL 533
+L+ + L+ N + + I KNL YL L
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLTYLTL 311
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347
L L L L+ N +I + +LT ++ DL+NNQ++ P G L L ++L N
Sbjct: 215 LTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQ 271
Query: 348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN 407
S P L L L + L++NQL S I L N
Sbjct: 272 ISNISP--LAGLTALTNLELNENQLEDI------------------------SPISNLKN 305
Query: 408 LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
LT L L NN S I+ + L KL+ L+ S+N +S
Sbjct: 306 LTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVS 339
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
T +D S S I TQV + L +NQ+ P RL L + L+NN +
Sbjct: 12 TTVDCSGKSLASVPTGIPTTTQVLY--LYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-V 68
Query: 352 IPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNN 392
+P+ +F L L + L+DNQL G D KSL +I+L NN
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL--KSLTHIWLLNN 112
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
+ Q +YL +N++ P L LT L LD+N + + +F KL +L L L+ N
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89
Query: 443 L 443
L
Sbjct: 90 L 90
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 43/271 (15%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L+NL Q+ + SN+ +I + NLT++ ++NNQ+A P + L NL + L
Sbjct: 62 LNNLTQINF----SNNQLTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLF 115
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
NN + P L +L L + LS N +S SLQ + G+ + +
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNF------GNQVTDLKP 167
Query: 405 LVNLTDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461
L NLT L+ + SN S I+ + AKL L+ L ++N +S I L
Sbjct: 168 LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGI---LTNLDEL 221
Query: 462 SLSACNISAFPRFLRTQDELSYLDLSENKIDGQIP--------------SWISEI----G 503
SL+ + L + L+ LDL+ N+I P + IS I G
Sbjct: 222 SLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Query: 504 KDSLSYVNLSHNFITKMKQIP-WKNLGYLDL 533
+L+ + L+ N + + I KNL YL L
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLTYLTL 311
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347
L L L L+ N +I + +LT ++ DL+NNQ++ P G L L ++L N
Sbjct: 215 LTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQ 271
Query: 348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI-YLSNNRLQGSIPSSIFELV 406
S P L L L + L++NQL D P +L+N+ YL+ L + S I +
Sbjct: 272 ISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLT---LYFNNISDISPVS 323
Query: 407 NLTDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
+LT LQ +N S ++ A L + +L HN +S
Sbjct: 324 SLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQIS 361
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 289 VQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342
+QLT+LD SSN EI D+ LTQ+++FD S N L S S+L L I+
Sbjct: 212 IQLTFLDCSSNKL-TEI-DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 314 VSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373
+ DL NN ++ LQ+L + L NN S L L+ + +S N L
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 374 GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIA-EPYMFAKLI 431
PS SL + + +NR++ +P +F L N+ +++ N EP F L
Sbjct: 116 EIPPNLPS-SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 432 KLKYLYLSHNSLS 444
KL YL +S L+
Sbjct: 173 KLNYLRISEAKLT 185
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 396
NL + L++N S P L L LE + ++ N+L +++ PS L ++L NN L+
Sbjct: 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFLDNNELRD 120
Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456
+ S+ L NL L + +N I M L KL+ L L N ++ NT + +
Sbjct: 121 T--DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEIT--NTGGL-TRLK 172
Query: 457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWIS 500
K +++ L+ P ++ Q EL Y+ + DG+ WIS
Sbjct: 173 KVNWIDLTGQKCVNEP--VKYQPEL-YITNTVKDPDGR---WIS 210
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 122/291 (41%), Gaps = 24/291 (8%)
Query: 218 SPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXF 277
+ ++ LD++ T LP + L LL +L+L + F S
Sbjct: 275 TQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVK 334
Query: 278 SGHI-PSSLSNLVQLTYLDLSSNSFFGEIPD-----IFNLTQVSFFDLSNNQLAGPIPSH 331
H+ L L L LDLS N E D + NL+ + +LS+N+ G
Sbjct: 335 KLHLGVGCLEKLGNLQTLDLSHNDI--EASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Query: 332 GSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLS----DNQLSGHIDEFPSKSLQN 386
L L+ L P F +L L+ + L+ D + P L++
Sbjct: 393 FKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP--VLRH 450
Query: 387 IYLSNNRLQ-GSI-PSSIFELV-NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
+ L N Q G+I +++ + V +L L L S I + F L K+ ++ LSHNSL
Sbjct: 451 LNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSI-DQQAFHSLGKMSHVDLSHNSL 509
Query: 444 SLGNTFKIDS-PFPKFSYLSLSACNISAF-PRFLRTQDELSYLDLSENKID 492
+ + IDS K YL+L+A +I+ PR L + S ++LS N +D
Sbjct: 510 TCDS---IDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPLD 557
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIP 613
VL+LS+N L G++ C+ P + VLDL NNR+ SIP
Sbjct: 432 VLNLSSNMLTGSVFRCL---PPKVKVLDLHNNRI-MSIP 466
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 456 PKFSYLSLSACNISAFPRFLRTQD-----ELSYLDLSENKIDGQIPSWISEIGKDSLSYV 510
P+ LSLS +IS LR D EL L LS N+I + + +D L Y+
Sbjct: 52 PRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQD-LEYL 105
Query: 511 NLSHNFITKMKQIPWKNLGYLDLRSN 536
++SHN + + P +L +LDL N
Sbjct: 106 DVSHNRLQNISCCPMASLRHLDLSFN 131
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
+P LSN LT +DLS+N F N+TQ+ LS N+L P L++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 340 LIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQL 372
L+ L+ N S +P F+ L L ++ + N L
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK--ESF 693
+P+ L N + ++D+ N +I+ N+ +L L+L N+ R P+ +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL----RCIPPRTFDGL 101
Query: 694 PKLRILDLSINNFSGYLPERFLENLNAMRNVS 725
LR+L L N+ S +PE +L+A+ +++
Sbjct: 102 KSLRLLSLHGNDIS-VVPEGAFNDLSALSHLA 132
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
+ Q +YL +NR+ P L LT L LD+N + + +F KL +L L L+ N
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89
Query: 443 L 443
L
Sbjct: 90 L 90
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
T +D S S I TQV + L +N++ P RL L + L+NN +
Sbjct: 12 TTVDCSGKSLASVPTGIPTTTQVLY--LYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-V 68
Query: 352 IPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNN 392
+P+ +F L L + L+DNQL G D +SL +I+L NN
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL--RSLTHIWLLNN 112
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 312 TQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR---------LNNNSFSGTIPSWLFSLPLL 362
V++ DLS N +A + SRLQ+L ++ + NN+F G + L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 363 EYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF--ELVNLTDLQLDSNNFSG 420
++++L +G + L+ + L+ L G++ S F L +L L L NN
Sbjct: 90 QFLQLETGAFNGLAN------LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 421 IAEPYMFAKLIKLKYLYLSHNSL 443
I F + + L L+ N +
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKV 166
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N ++ + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI 376
DLS+NQL +P G L L ++ ++ N + L L L+ + L N+L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 377 DEF--PSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKL 433
P+ L+ + L+NN+L +P+ + L NL L L N+ I + + + L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 434 KYLY 437
+L+
Sbjct: 200 AFLH 203
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 385 QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
Q ++L+NN++ P LVNL L +SN + I +F KL +L L L+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG-VFDKLTQLTQLDLNDNHL 93
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLS---- 373
L+NNQ+ P L NL + N+N + IP+ +F L L + L+DN L
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPR 98
Query: 374 GHIDEFPSKSLQNIYLSNN 392
G D KSL +IYL NN
Sbjct: 99 GAFDNL--KSLTHIYLYNN 115
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N ++ + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI 376
DLS+NQL +P G L L ++ ++ N + L L L+ + L N+L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 377 DEF--PSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKL 433
P+ L+ + L+NN+L +P+ + L NL L L N+ I + + + L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 434 KYLY 437
+L+
Sbjct: 200 AFLH 203
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N ++ + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI 376
DLS+NQL +P G L L ++ ++ N + L L L+ + L N+L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 377 DEF--PSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKL 433
P+ L+ + L+NN+L +P+ + L NL L L N+ I + + + L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 434 KYLY 437
+L+
Sbjct: 200 AFLH 203
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
++PD T ++ +L++NQL ++ +R L + + N+ S P LP+L+
Sbjct: 28 QVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 364 YVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE 423
+ L N+LS D+ + NLT+L L SN+ I
Sbjct: 87 VLNLQHNELSQLSDK----------------------TFAFCTNLTELHLMSNSIQKIKN 124
Query: 424 PYMFAKLIKLKYLYLSHNSLS 444
F K L L LSHN LS
Sbjct: 125 N-PFVKQKNLITLDLSHNGLS 144
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 307 DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVR 366
DIF + + +LS+NQ+ P + L + LNN PS L L
Sbjct: 176 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCL----- 227
Query: 367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL--VNLTDLQLDSNNFSGIAEP 424
E + S++N+ LSN++L + ++ L NLT L L NN + +
Sbjct: 228 -----------ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 276
Query: 425 YMFAKLIKLKYLYLSHNSL------SLGNTFKIDSPFPKFSYLSLSACNISAFPRF---- 474
FA L +L+Y +L +N++ SL F + K S+ + + ++++ P+
Sbjct: 277 S-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFS 334
Query: 475 LRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFIT 518
+ L +L++ +N I G + + G +L Y++LS++F +
Sbjct: 335 FQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTS 376
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
++PD T ++ +L++NQL ++ +R L + + N+ S P LP+L+
Sbjct: 23 QVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 364 YVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE 423
+ L N+LS D+ + NLT+L L SN+ I
Sbjct: 82 VLNLQHNELSQLSDK----------------------TFAFCTNLTELHLMSNSIQKIKN 119
Query: 424 PYMFAKLIKLKYLYLSHNSLS 444
F K L L LSHN LS
Sbjct: 120 N-PFVKQKNLITLDLSHNGLS 139
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 307 DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVR 366
DIF + + +LS+NQ+ P + L + LNN PS L L
Sbjct: 171 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCL----- 222
Query: 367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL--VNLTDLQLDSNNFSGIAEP 424
E + S++N+ LSN++L + ++ L NLT L L NN + +
Sbjct: 223 -----------ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 271
Query: 425 YMFAKLIKLKYLYLSHNSL------SLGNTFKIDSPFPKFSYLSLSACNISAFPRF---- 474
FA L +L+Y +L +N++ SL F + K S+ + + ++++ P+
Sbjct: 272 S-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFS 329
Query: 475 LRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFIT 518
+ L +L++ +N I G + + G +L Y++LS++F +
Sbjct: 330 FQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTS 371
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
++PD T ++ +L++NQL ++ +R L + + N+ S P LP+L+
Sbjct: 18 QVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 364 YVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE 423
+ L N+LS D+ + NLT+L L SN+ I
Sbjct: 77 VLNLQHNELSQLSDK----------------------TFAFCTNLTELHLMSNSIQKIKN 114
Query: 424 PYMFAKLIKLKYLYLSHNSLS 444
F K L L LSHN LS
Sbjct: 115 N-PFVKQKNLITLDLSHNGLS 134
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 307 DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVR 366
DIF + + +LS+NQ+ P + L + LNN PS L L
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCL----- 217
Query: 367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL--VNLTDLQLDSNNFSGIAEP 424
E + S++N+ LSN++L + ++ L NLT L L NN + +
Sbjct: 218 -----------ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266
Query: 425 YMFAKLIKLKYLYLSHNSL------SLGNTFKIDSPFPKFSYLSLSACNISAFPRF---- 474
FA L +L+Y +L +N++ SL F + K S+ + + ++++ P+
Sbjct: 267 S-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFS 324
Query: 475 LRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFIT 518
+ L +L++ +N I G + + G +L Y++LS++F +
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTS 366
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N ++ + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI 376
DLS+NQL +P G L L ++ ++ N + L L L+ + L N+L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 377 DEF--PSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKL 433
P+ L+ + L+NN+L +P+ + L NL L L N+ I + + + L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 434 KYLY 437
+L+
Sbjct: 200 AFLH 203
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 312 TQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR---------LNNNSFSGTIPSWLFSLPLL 362
V++ DLS N +A + SRLQ+L ++ + NN+F G + L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 363 EYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF--ELVNLTDLQLDSNNFSG 420
++++L +G + L+ + L+ L G++ S F L +L L L NN
Sbjct: 90 QFLQLETGAFNGLAN------LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 421 IAEPYMFAKLIKLKYLYLSHNSL 443
I F + + L L+ N +
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKV 166
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N + + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 59/272 (21%)
Query: 385 QNIYLSNNRLQGSIPSSIF------ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438
Q I N +P+++ EL+NL DLQ++ + Y FA ++ LY+
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE------IDTYAFAYAHTIQKLYM 100
Query: 439 SHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPRFL------------------RTQ 478
N++ + F+ P + L L ++S+ PR + R +
Sbjct: 101 GFNAIRYLPPHVFQ---NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157
Query: 479 DE-------LSYLDLSENKIDGQIPSWISEIGKDSLSY--------------VNLSHNFI 517
D+ L L LS N++ S I + ++SY ++ SHN I
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217
Query: 518 TKMKQIPWKNLGYLDLR-SNLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDVL 576
++ L L L+ +NL +S N+ + H + L+ L
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277
Query: 577 DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL 608
+SNNRL G P+L VLDL +N L
Sbjct: 278 YISNNRLVAL--NLYGQPIPTLKVLDLSHNHL 307
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 420 GIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSAC---NISAFPRFLR 476
++ Y + + I+LK + ++ + L L I F F L LS+C +
Sbjct: 99 AMSSSYTWLEEIRLKRMVVTDDCLEL-----IAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153
Query: 477 TQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNL 512
T L LDL E+ +D W+S S V+L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 32/160 (20%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
L NL ++T L+LS N + I L + DL++ Q+ P G L NL ++ L+
Sbjct: 81 LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDVTPLAG--LSNLQVLYLD 137
Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
N + P L L L+Y+ + + Q+S D P +
Sbjct: 138 LNQITNISP--LAGLTNLQYLSIGNAQVS---DLTP---------------------LAN 171
Query: 405 LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
L LT L+ D N S I+ A L L ++L +N +S
Sbjct: 172 LSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQIS 208
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N + + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N + + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N + + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 78 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N + + L L L L+L+ N + + F
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXX 631
L LDLS+N+L ++P +G P+L+VLD+ NRL G
Sbjct: 79 VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 136
Query: 632 XGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
P L K+E L + N + + L L L L+L+ N + + F
Sbjct: 137 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 451 IDSPFPKFSYLSLSACNIS----AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDS 506
+D PF K L+++ +IS A P LSYLDLS N + S++G +S
Sbjct: 320 LDLPFLKSLTLTMNKGSISFKKVALP-------SLSYLDLSRNALSFSGCCSYSDLGTNS 372
Query: 507 LSYVNLSHN--FITKMKQIPWKNLGYLDLRSNLLQ 539
L +++LS N I + + L +LD + + L+
Sbjct: 373 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 407
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 451 IDSPFPKFSYLSLSACNIS----AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDS 506
+D PF K L+++ +IS A P LSYLDLS N + S++G +S
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVALP-------SLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 507 LSYVNLSHN--FITKMKQIPWKNLGYLDLRSNLLQ 539
L +++LS N I + + L +LD + + L+
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 33/167 (19%)
Query: 388 YLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKL----------KYLY 437
YLS+ L+ F +NL L ++NF A P ++ + K ++LY
Sbjct: 349 YLSSLHLKA------FTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLY 402
Query: 438 LSHNSLSLGNTFKID-SPFPKFSYLSLSA-----CNISAFPRFLRTQDELSYLDLSENKI 491
N S +D + FP +Y + A C + +P T D +Y +L E
Sbjct: 403 QDSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMD--TYKELIER-- 458
Query: 492 DGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLL 538
I E+ K + + ++ F+ K+ NL Y + S LL
Sbjct: 459 -------IPELNKVARAAAEVAGQFVIKLTHDVELNLDYEEYNSQLL 498
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 296 LSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIP-- 353
+++NS + I L ++ +LSNNQ+ P L N+ + LN N + P
Sbjct: 50 IANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQ--YLPNVTKLFLNGNKLTDIKPLA 107
Query: 354 -----SWLF------------------SLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLS 390
WLF LE+ +SD H+ + L+++YL
Sbjct: 108 NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ-----LESLYLG 162
Query: 391 NNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
NN++ + + L L L L+ N S I A L KL+ LYLS N +S
Sbjct: 163 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS 211
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 284 SLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGP-IPSHGSRLQNLVLI 341
SL NL+ YLD+S IFN L+ + ++ N +P + L+NL +
Sbjct: 419 SLRNLI---YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 342 RLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIP 399
L+ P+ SL L+ + ++ NQL D + SLQ I+L N S P
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 30/216 (13%)
Query: 502 IGKDSLSYVNLSHNFITKMKQIPW---KNLGYLDLRSNLLQGXXXXXXXXXXXXXISNNQ 558
+ + S+ +++LSH F+ + + K+L L+L N + + N
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 559 FT--GEIIHS-ICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG----- 610
+ GE+ S + + +DL N + I + F L LDLR+N L
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Query: 611 SIPGTFAXXXXXXXXXXXXXXXGGAIPQSLVNCT--KVEVLDIGNIKINDAFPYWLGNLP 668
SIP F + +L++ + ++E LDI Y+L +P
Sbjct: 382 SIPDIFLSGNKLVTLPKIN------LTANLIHLSENRLENLDI---------LYFLLRVP 426
Query: 669 ELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN 704
LQ+L+L N+F + P E+ P L L L N
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGEN 461
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 468 ISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKN 527
+S + + + + YLD+S K + + L Y++LSHN + K+ P N
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQE------------LEYLDLSHNKLVKISCHPTVN 91
Query: 528 LGYLDLRSN 536
L +LDL N
Sbjct: 92 LKHLDLSFN 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,177,098
Number of Sequences: 62578
Number of extensions: 888396
Number of successful extensions: 2199
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 360
length of query: 901
length of database: 14,973,337
effective HSP length: 108
effective length of query: 793
effective length of database: 8,214,913
effective search space: 6514426009
effective search space used: 6514426009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)