Query 041976
Match_columns 901
No_of_seqs 853 out of 5172
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 12:42:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-69 2.8E-74 674.7 47.4 583 28-871 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-54 6E-59 537.2 38.2 512 242-868 70-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 5.8E-40 1.3E-44 328.2 -16.6 513 194-864 45-561 (565)
4 KOG4194 Membrane glycoprotein 100.0 7.1E-36 1.5E-40 312.0 8.7 345 455-840 101-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.4E-39 5.2E-44 323.8 -17.1 475 172-681 47-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 2.3E-35 5.1E-40 308.1 6.7 390 244-680 55-451 (873)
7 KOG0618 Serine/threonine phosp 100.0 3.2E-35 6.9E-40 323.8 -1.7 512 223-851 3-516 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.2E-34 4.7E-39 317.3 -5.0 500 112-678 3-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.2E-37 288.6 -3.4 366 104-492 4-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.1E-30 2.4E-35 274.7 -3.5 371 129-522 4-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 3E-21 6.4E-26 240.6 29.9 314 80-420 531-860 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.8E-21 6.2E-26 240.7 27.9 285 217-515 610-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.9E-24 4E-29 217.4 -4.0 85 597-681 275-359 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 5.7E-21 1.2E-25 219.8 17.7 262 480-849 202-463 (788)
15 KOG4237 Extracellular matrix p 99.8 5.4E-23 1.2E-27 206.9 -2.9 291 531-844 51-359 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 2.2E-20 4.7E-25 215.1 17.6 264 459-829 204-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 6.7E-19 1.5E-23 204.5 18.8 341 24-419 57-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1E-18 2.2E-23 203.0 12.7 57 760-820 368-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-18 4.6E-23 187.3 -2.0 84 759-842 221-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 6.9E-18 1.5E-22 183.2 -1.1 61 382-442 250-318 (319)
21 KOG0617 Ras suppressor protein 99.7 3E-18 6.5E-23 153.0 -4.2 165 102-287 28-194 (264)
22 KOG0617 Ras suppressor protein 99.6 1.6E-17 3.5E-22 148.3 -5.6 157 215-375 30-188 (264)
23 PLN03150 hypothetical protein; 99.5 4.1E-14 9E-19 164.6 13.9 154 25-208 367-529 (623)
24 PLN03150 hypothetical protein; 99.3 2.5E-12 5.4E-17 149.8 9.6 118 760-877 419-538 (623)
25 COG4886 Leucine-rich repeat (L 99.1 2.3E-10 4.9E-15 127.9 8.0 200 111-332 97-297 (394)
26 KOG0532 Leucine-rich repeat (L 99.1 7.2E-12 1.6E-16 133.2 -4.0 175 105-302 73-247 (722)
27 KOG0532 Leucine-rich repeat (L 99.1 5.4E-12 1.2E-16 134.1 -5.1 175 218-421 75-249 (722)
28 COG4886 Leucine-rich repeat (L 99.0 2.2E-10 4.9E-15 127.9 7.0 174 218-395 116-290 (394)
29 KOG3207 Beta-tubulin folding c 99.0 3E-11 6.6E-16 124.7 -0.6 208 262-492 118-339 (505)
30 KOG1259 Nischarin, modulator o 99.0 6.5E-11 1.4E-15 115.9 0.8 135 263-423 282-416 (490)
31 KOG1909 Ran GTPase-activating 99.0 1.4E-11 3E-16 123.9 -4.7 132 218-372 157-310 (382)
32 KOG4658 Apoptotic ATPase [Sign 99.0 3.6E-10 7.7E-15 134.3 5.1 81 108-204 546-628 (889)
33 KOG3207 Beta-tubulin folding c 98.9 2.9E-10 6.3E-15 117.6 2.1 184 286-492 118-314 (505)
34 KOG1909 Ran GTPase-activating 98.9 1.1E-10 2.4E-15 117.5 -1.2 131 288-418 156-310 (382)
35 KOG1259 Nischarin, modulator o 98.9 3.8E-10 8.2E-15 110.7 1.5 132 334-493 282-413 (490)
36 PF14580 LRR_9: Leucine-rich r 98.9 2.1E-09 4.5E-14 102.1 6.1 86 359-445 41-127 (175)
37 PF14580 LRR_9: Leucine-rich r 98.9 9.7E-10 2.1E-14 104.4 3.2 81 218-302 19-101 (175)
38 PF13855 LRR_8: Leucine rich r 98.8 1.4E-09 3E-14 84.8 1.9 60 784-843 2-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.8 3.5E-09 7.5E-14 126.1 4.7 262 211-499 516-790 (889)
40 PF08263 LRRNT_2: Leucine rich 98.8 6.8E-09 1.5E-13 73.7 4.1 40 29-77 2-43 (43)
41 PF13855 LRR_8: Leucine rich r 98.8 3.9E-09 8.4E-14 82.3 2.7 61 759-819 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.7 1.3E-09 2.9E-14 121.7 -1.0 196 237-443 91-289 (414)
43 KOG0531 Protein phosphatase 1, 98.7 1.1E-09 2.4E-14 122.4 -2.3 241 193-444 71-318 (414)
44 KOG2120 SCF ubiquitin ligase, 98.4 5E-09 1.1E-13 103.1 -8.3 151 170-322 210-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.3 3.8E-08 8.3E-13 108.0 -2.9 175 546-733 108-293 (1096)
46 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.5E-13 110.9 -5.8 129 311-444 163-292 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.8E-13 100.2 -6.2 153 290-442 186-349 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.0 2E-07 4.4E-12 90.8 -4.4 246 82-350 31-317 (388)
49 KOG4579 Leucine-rich repeat (L 98.0 6.2E-07 1.4E-11 78.3 -1.0 112 759-878 53-164 (177)
50 KOG2982 Uncharacterized conser 98.0 1.5E-06 3.3E-11 85.9 1.0 213 263-494 43-264 (418)
51 KOG2982 Uncharacterized conser 98.0 3.2E-06 6.9E-11 83.7 3.2 195 643-839 70-287 (418)
52 KOG4579 Leucine-rich repeat (L 98.0 3.5E-07 7.5E-12 79.9 -3.6 92 758-852 76-167 (177)
53 KOG4341 F-box protein containi 98.0 3.1E-07 6.8E-12 95.1 -5.0 63 404-466 188-252 (483)
54 COG5238 RNA1 Ran GTPase-activa 97.9 1.1E-06 2.3E-11 85.8 -1.5 41 261-301 88-132 (388)
55 PF12799 LRR_4: Leucine Rich r 97.7 1.9E-05 4.1E-10 56.1 2.2 36 784-820 2-37 (44)
56 PRK15386 type III secretion pr 97.7 0.00016 3.4E-09 77.7 9.6 32 596-630 156-187 (426)
57 PRK15386 type III secretion pr 97.7 0.00015 3.3E-09 77.7 9.5 111 527-654 73-187 (426)
58 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 69.4 5.3 84 361-444 43-126 (233)
59 PF12799 LRR_4: Leucine Rich r 97.5 8.7E-05 1.9E-09 52.7 3.2 36 219-254 2-37 (44)
60 KOG1644 U2-associated snRNP A' 97.5 0.00019 4.1E-09 67.7 5.6 107 382-491 42-152 (233)
61 KOG4341 F-box protein containi 97.3 1.3E-05 2.8E-10 83.5 -4.5 88 404-491 214-306 (483)
62 KOG3665 ZYG-1-like serine/thre 97.3 8.2E-05 1.8E-09 86.9 1.2 83 106-204 147-230 (699)
63 KOG3665 ZYG-1-like serine/thre 97.2 0.00017 3.6E-09 84.4 2.1 108 406-515 122-230 (699)
64 KOG2739 Leucine-rich acidic nu 97.0 0.00029 6.4E-09 69.5 1.7 82 218-302 43-129 (260)
65 PF13306 LRR_5: Leucine rich r 96.6 0.0083 1.8E-07 54.8 7.8 76 597-676 36-111 (129)
66 KOG2739 Leucine-rich acidic nu 96.6 0.0027 5.8E-08 62.9 4.6 65 643-708 64-130 (260)
67 PF13306 LRR_5: Leucine rich r 96.3 0.013 2.7E-07 53.6 7.2 121 236-362 7-128 (129)
68 KOG2123 Uncharacterized conser 96.0 0.00044 9.5E-09 68.3 -4.0 85 359-445 18-102 (388)
69 KOG2123 Uncharacterized conser 96.0 0.00053 1.1E-08 67.8 -3.6 101 335-437 18-123 (388)
70 PF00560 LRR_1: Leucine Rich R 95.0 0.0077 1.7E-07 35.4 0.3 12 809-820 2-13 (22)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.0081 1.8E-07 35.3 0.3 20 785-805 2-21 (22)
72 KOG1947 Leucine rich repeat pr 94.5 0.0065 1.4E-07 70.0 -1.7 35 240-274 187-223 (482)
73 KOG1947 Leucine rich repeat pr 94.3 0.0091 2E-07 68.8 -1.0 60 382-441 243-305 (482)
74 PF13504 LRR_7: Leucine rich r 91.2 0.13 2.9E-06 27.9 1.3 16 219-234 2-17 (17)
75 KOG4308 LRR-containing protein 90.1 0.0031 6.8E-08 70.7 -11.4 36 573-609 89-128 (478)
76 smart00370 LRR Leucine-rich re 89.5 0.28 6E-06 30.1 1.9 16 807-822 2-17 (26)
77 smart00369 LRR_TYP Leucine-ric 89.5 0.28 6E-06 30.1 1.9 16 807-822 2-17 (26)
78 smart00370 LRR Leucine-rich re 88.4 0.36 7.8E-06 29.6 1.9 23 782-804 1-23 (26)
79 smart00369 LRR_TYP Leucine-ric 88.4 0.36 7.8E-06 29.6 1.9 23 782-804 1-23 (26)
80 PF13504 LRR_7: Leucine rich r 88.3 0.3 6.5E-06 26.6 1.3 13 458-470 3-15 (17)
81 KOG4308 LRR-containing protein 87.4 0.0045 9.7E-08 69.5 -12.6 36 267-302 89-128 (478)
82 KOG0473 Leucine-rich repeat pr 86.6 0.033 7.1E-07 54.1 -5.3 84 758-844 41-124 (326)
83 KOG3864 Uncharacterized conser 86.5 0.075 1.6E-06 50.7 -2.9 82 547-628 101-184 (221)
84 KOG0473 Leucine-rich repeat pr 83.0 0.034 7.4E-07 53.9 -6.9 85 190-276 38-122 (326)
85 KOG3864 Uncharacterized conser 82.0 0.6 1.3E-05 44.8 0.9 35 621-655 102-136 (221)
86 smart00365 LRR_SD22 Leucine-ri 76.5 2 4.4E-05 26.4 1.7 14 807-820 2-15 (26)
87 PF13516 LRR_6: Leucine Rich r 73.2 1.3 2.9E-05 26.4 0.3 15 760-774 3-17 (24)
88 KOG4242 Predicted myosin-I-bin 63.1 35 0.00077 37.6 8.5 237 571-820 214-481 (553)
89 smart00364 LRR_BAC Leucine-ric 59.4 6.1 0.00013 24.2 1.3 18 218-235 2-19 (26)
90 smart00368 LRR_RI Leucine rich 58.0 8.2 0.00018 24.1 1.8 13 808-820 3-15 (28)
91 KOG4242 Predicted myosin-I-bin 56.1 55 0.0012 36.2 8.5 109 337-445 355-482 (553)
92 smart00367 LRR_CC Leucine-rich 52.1 12 0.00025 22.8 1.8 16 193-208 1-16 (26)
93 KOG3763 mRNA export factor TAP 47.0 9 0.0002 42.8 1.1 62 758-821 217-284 (585)
94 KOG3763 mRNA export factor TAP 41.7 19 0.00041 40.4 2.5 35 455-489 217-254 (585)
95 TIGR00864 PCC polycystin catio 33.1 23 0.00049 47.9 1.7 33 789-821 1-33 (2740)
96 TIGR03475 tap_IncFII_lead RepA 27.5 86 0.0019 18.8 2.5 24 5-28 2-25 (26)
97 TIGR00864 PCC polycystin catio 25.1 42 0.00091 45.6 2.1 33 765-797 1-33 (2740)
98 PF08048 RepA1_leader: Tap Rep 23.0 1.2E+02 0.0026 18.0 2.5 23 5-27 2-24 (25)
99 PRK14745 RepA leader peptide T 21.0 1.4E+02 0.003 17.8 2.5 24 5-28 2-25 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-69 Score=674.68 Aligned_cols=583 Identities=35% Similarity=0.565 Sum_probs=393.4
Q ss_pred CHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCc
Q 041976 28 PREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLL 107 (901)
Q Consensus 28 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~ 107 (901)
.++|++||++||+++.++.+ .+.+|..+++||.|.||+|+. .++|++|+|+++.+.|.+++ .+..++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~----------~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~ 93 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK----------YLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLP 93 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc----------cCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCC
Confidence 56899999999999965433 678998888999999999985 57999999999999998877 788899
Q ss_pred cCceEeCCCCCCCCCcCCcccc-CCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCC
Q 041976 108 HLQTLNLSHNDFDYSEISSGFS-RFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNF 186 (901)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~ 186 (901)
+|++|+|++|.+.+. +|..+. ++++|++|+|++|++++.+|. +.+ ++|++|++++|.+.+.+
T Consensus 94 ~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l--------------~~L~~L~Ls~n~~~~~~ 156 (968)
T PLN00113 94 YIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI--------------PNLETLDLSNNMLSGEI 156 (968)
T ss_pred CCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--ccc--------------CCCCEEECcCCcccccC
Confidence 999999999998876 776654 888999999998888887775 345 77888888888777777
Q ss_pred ccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCC
Q 041976 187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQ 266 (901)
Q Consensus 187 p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~ 266 (901)
|..++.+++|++|++++| .+.+.+| ..++++++|++|++++|.+.+.+|..++++++
T Consensus 157 p~~~~~l~~L~~L~L~~n-~l~~~~p----------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGN-VLVGKIP----------------------NSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred ChHHhcCCCCCEEECccC-cccccCC----------------------hhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 777777777777777777 5555555 56666666666666666666666666666666
Q ss_pred CCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcC
Q 041976 267 LTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345 (901)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 345 (901)
|++|++++|.+++.+|..++++++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 66666666666666666666666666666666655544443 44444455555544444444444444444444444444
Q ss_pred CcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchh
Q 041976 346 NSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPY 425 (901)
Q Consensus 346 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 425 (901)
|.+.+.+|. .+.++++|+.|++++|.+.+..+ .
T Consensus 294 n~l~~~~p~----------------------------------------------~~~~l~~L~~L~l~~n~~~~~~~-~ 326 (968)
T PLN00113 294 NSLSGEIPE----------------------------------------------LVIQLQNLEILHLFSNNFTGKIP-V 326 (968)
T ss_pred CeeccCCCh----------------------------------------------hHcCCCCCcEEECCCCccCCcCC-h
Confidence 444433333 34444444444444444443322 1
Q ss_pred hhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCC
Q 041976 426 MFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKD 505 (901)
Q Consensus 426 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~ 505 (901)
.+..+ ++|+.|++++|.+.+.+|..+ ...
T Consensus 327 ~~~~l------------------------------------------------~~L~~L~L~~n~l~~~~p~~l--~~~- 355 (968)
T PLN00113 327 ALTSL------------------------------------------------PRLQVLQLWSNKFSGEIPKNL--GKH- 355 (968)
T ss_pred hHhcC------------------------------------------------CCCCEEECcCCCCcCcCChHH--hCC-
Confidence 22222 223333333333322222222 000
Q ss_pred CccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcc
Q 041976 506 SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG 585 (901)
Q Consensus 506 ~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 585 (901)
++|+.|++++|++++.+|..++.+++|+.|++++|.+.+
T Consensus 356 -----------------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 356 -----------------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred -----------------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 112222222222222333333344455555555555555
Q ss_pred cCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcccccc
Q 041976 586 TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG 665 (901)
Q Consensus 586 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 665 (901)
.+|..+..+. +|+.|++++|++++..| ..|..+++|+.|++++|++.+.+|..+.
T Consensus 395 ~~p~~~~~~~-~L~~L~L~~n~l~~~~p------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 395 EIPKSLGACR-SLRRVRLQDNSFSGELP------------------------SEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred cCCHHHhCCC-CCCEEECcCCEeeeECC------------------------hhHhcCCCCCEEECcCCcccCccChhhc
Confidence 5555444443 55555555555544444 4444455555555555555555555555
Q ss_pred CCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEE
Q 041976 666 NLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVV 745 (901)
Q Consensus 666 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~ 745 (901)
.+++|++|++++|++.+.++... ..++|+.|++++|++++.+|..+ .+
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~-~~---------------------------- 497 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL-GS---------------------------- 497 (968)
T ss_pred cCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChhh-hh----------------------------
Confidence 55555566666665555544432 34678888888888888777543 11
Q ss_pred eecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCc
Q 041976 746 TLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPK 825 (901)
Q Consensus 746 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~ 825 (901)
++.|++|+|++|++++.+|..++++++|++|+|++|.+++.+|..|+.+++|+.|||++|++++.+|.
T Consensus 498 ------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 498 ------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccccccCCcCCCCCC
Q 041976 826 PLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFP 871 (901)
Q Consensus 826 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~ 871 (901)
.+..+++|+.|++++|++.|.+|..+++.++...++.||+++||.+
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-54 Score=537.19 Aligned_cols=512 Identities=34% Similarity=0.538 Sum_probs=384.4
Q ss_pred CcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCcccc-CCCCCCEEEccCCcCcccCCCCCCCCCCCEEECC
Q 041976 242 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLS-NLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLS 320 (901)
Q Consensus 242 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~ 320 (901)
+++.|++++|.+.+.++..+..+++|++|++++|.+++.+|..+. .+++|++|++++|.+++.+|. ..+++|++|+++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls 148 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS 148 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence 455555555555555555555555566666655555555554433 555666666666655554443 335556666666
Q ss_pred CCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC--CCCCCCEEEccCccCCCCC
Q 041976 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSI 398 (901)
Q Consensus 321 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~L~~L~L~~n~l~~~~ 398 (901)
+|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.. .+++|+.|++++|.+++.+
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 66665556666666666666666666666566666666666666666665555444432 4455555555555566666
Q ss_pred chhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccC
Q 041976 399 PSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQ 478 (901)
Q Consensus 399 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~ 478 (901)
|..++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+ .+|..+..+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~------------------------~~p~~l~~l 283 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSG------------------------PIPPSIFSL 283 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeec------------------------cCchhHhhc
Confidence 6667777777777777777666544 456666666666666555442 234556666
Q ss_pred CCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCc
Q 041976 479 DELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQ 558 (901)
Q Consensus 479 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 558 (901)
++|++|++++|.+.+.+|..+ ..+ ++|++|++++|.
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~--~~l------------------------------------------~~L~~L~l~~n~ 319 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELV--IQL------------------------------------------QNLEILHLFSNN 319 (968)
T ss_pred cCcCEEECcCCeeccCCChhH--cCC------------------------------------------CCCcEEECCCCc
Confidence 777777777777776666655 222 345566666677
Q ss_pred cccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCc
Q 041976 559 FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQ 638 (901)
Q Consensus 559 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 638 (901)
+.+..|..+..+++|+.|++++|.+++.+|..+..+. +|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|.
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 7777788888899999999999999989998888876 999999999999999999999999999999999999999999
Q ss_pred cccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhh
Q 041976 639 SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENL 718 (901)
Q Consensus 639 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 718 (901)
.+..+++|+.|++++|++++..|..+..++.|+.|++++|.+.+.++... ..+++|+.|++++|++.+.+|..+ .
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~-- 473 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G-- 473 (968)
T ss_pred HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c--
Confidence 99999999999999999999999999999999999999999998777654 578999999999999998777532 0
Q ss_pred HhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCC
Q 041976 719 NAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQ 798 (901)
Q Consensus 719 ~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 798 (901)
.++|+.||+++|++++.+|..+.++++|++|+|++|++++.
T Consensus 474 ---------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 514 (968)
T PLN00113 474 ---------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514 (968)
T ss_pred ---------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence 35789999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCC-CCCCcccccccCCcCCC
Q 041976 799 IPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGP-QFNTFQEDSYIGNLGLC 868 (901)
Q Consensus 799 ~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~-~~~~~~~~~~~~n~~lc 868 (901)
+|..++++++|++|+|++|++++.+|..+..+++|+.|+|++|+++|.+|... .+..+....+.+|...+
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999999999999999999999999999999999999752 34445555566665443
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.8e-40 Score=328.24 Aligned_cols=513 Identities=25% Similarity=0.322 Sum_probs=248.4
Q ss_pred CCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECC
Q 041976 194 PNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLM 273 (901)
Q Consensus 194 ~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~ 273 (901)
..|+.+++++| .+....++...+..+.+|++++|++..+|++++.+..++.++.++|++. .+|+.++.+.+|+.|+++
T Consensus 45 v~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 45666666666 5555555555555666666666666666666666666666666665555 455555555555555555
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCC
Q 041976 274 HNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIP 353 (901)
Q Consensus 274 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 353 (901)
.|.+. .+|++++.+..|..++..+|++...+++++.+.+|..+++.+|++....|..+ +++.|+++|...|.++ .+|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCC
Confidence 55555 44555555555555555555555444445555555555555555553322222 2555555555555444 444
Q ss_pred hhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCC
Q 041976 354 SWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKL 433 (901)
Q Consensus 354 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 433 (901)
..++.+.+|+.|++..|++.. .| .|.+|..|+++++..|++.-. |.+...+++++
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~-----------------------lP-ef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l 254 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRF-----------------------LP-EFPGCSLLKELHVGENQIEML-PAEHLKHLNSL 254 (565)
T ss_pred hhhcchhhhHHHHhhhccccc-----------------------CC-CCCccHHHHHHHhcccHHHhh-HHHHhcccccc
Confidence 455555555555555554432 22 344444444444444444332 11233333444
Q ss_pred cEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcC
Q 041976 434 KYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLS 513 (901)
Q Consensus 434 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls 513 (901)
..||+.+|+++...... ..+.+|++|++++|.++.+|..++++ .|+.|-+.+|.+...-.+.+..+...-|++|.=
T Consensus 255 ~vLDLRdNklke~Pde~--clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs- 330 (565)
T KOG0472|consen 255 LVLDLRDNKLKEVPDEI--CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS- 330 (565)
T ss_pred eeeeccccccccCchHH--HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-
Confidence 44444333333221111 12334444555555555555555555 555666666555432222221111111111100
Q ss_pred CCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhc
Q 041976 514 HNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGN 593 (901)
Q Consensus 514 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 593 (901)
. +.+-.+... .-.+-..-+ ...........+...+.|++++-+++ .+|+.++.
T Consensus 331 --~----------------~~~dglS~s---e~~~e~~~t-----~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfe 383 (565)
T KOG0472|consen 331 --K----------------IKDDGLSQS---EGGTETAMT-----LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFE 383 (565)
T ss_pred --h----------------hccCCCCCC---cccccccCC-----CCCCcccchhhhhhhhhhcccccccc-cCCHHHHH
Confidence 0 000000000 000000000 00001111122344555666666665 55555444
Q ss_pred CC--CCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCc
Q 041976 594 FS--PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQ 671 (901)
Q Consensus 594 ~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 671 (901)
.. .-.+..+++.|++. .+|..+..+ ..+.+.-+..|+..+.+|..+..+++|.
T Consensus 384 a~~~~~Vt~VnfskNqL~-elPk~L~~l------------------------kelvT~l~lsnn~isfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLC-ELPKRLVEL------------------------KELVTDLVLSNNKISFVPLELSQLQKLT 438 (565)
T ss_pred HhhhcceEEEecccchHh-hhhhhhHHH------------------------HHHHHHHHhhcCccccchHHHHhhhcce
Confidence 32 01455555555554 344433333 3333222222333344444455555555
Q ss_pred EEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchh
Q 041976 672 VLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTE 751 (901)
Q Consensus 672 ~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~ 751 (901)
.|++++|.+. .+|.++++
T Consensus 439 ~L~L~NN~Ln---------------------------~LP~e~~~----------------------------------- 456 (565)
T KOG0472|consen 439 FLDLSNNLLN---------------------------DLPEEMGS----------------------------------- 456 (565)
T ss_pred eeecccchhh---------------------------hcchhhhh-----------------------------------
Confidence 5555544432 12222110
Q ss_pred HHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCC
Q 041976 752 IEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT 831 (901)
Q Consensus 752 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~ 831 (901)
+..|+.||+|.|+|. .+|..+..+..|+.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..+++++
T Consensus 457 ------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 457 ------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT 528 (565)
T ss_pred ------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence 122344444444443 44555555566666666778888777777888888888888888887 5677888888
Q ss_pred CCCeeeCCCCcCccCCCCC--CCCCCcccccccCC
Q 041976 832 SLSVLNLSHNRLDGPIPHG--PQFNTFQEDSYIGN 864 (901)
Q Consensus 832 ~L~~L~Ls~N~l~g~iP~~--~~~~~~~~~~~~~n 864 (901)
+|+.|++++|++. .|.. ....+....+|.++
T Consensus 529 nL~hLeL~gNpfr--~Pr~~iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 529 NLRHLELDGNPFR--QPRHQILMKGTAAILSYLRD 561 (565)
T ss_pred ceeEEEecCCccC--CCHHHHhccChHHHHHHhcc
Confidence 8888888888887 3422 22234444555554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-36 Score=311.98 Aligned_cols=345 Identities=25% Similarity=0.318 Sum_probs=268.4
Q ss_pred CCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeecc
Q 041976 455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLR 534 (901)
Q Consensus 455 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 534 (901)
+|+|+++++..|.++.+|.+.+...+++.|++.+|.|...-.+.+ ...+.|+.||+|.|.|+.++...|+.
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrslDLSrN~is~i~~~sfp~------- 171 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRSLDLSRNLISEIPKPSFPA------- 171 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH--HhHhhhhhhhhhhchhhcccCCCCCC-------
Confidence 444444444444455556555555556677777776665544444 33355666666666665555444321
Q ss_pred CccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCc
Q 041976 535 SNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG 614 (901)
Q Consensus 535 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~ 614 (901)
-.++++|++++|.|+..-...|..+.+|..|.|++|+++ .+|...+.-.++|+.|+|..|+|.-.--.
T Consensus 172 -----------~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 172 -----------KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred -----------CCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhh
Confidence 246777888888888777788888888889999999988 66655555334899999999988744456
Q ss_pred CccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCC
Q 041976 615 TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694 (901)
Q Consensus 615 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 694 (901)
+|.++++|+.|.|..|.+.......|..|.++++|+|+.|++...-..|+.++++|+.|+++.|.|...-+..+ .-.+
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftq 317 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQ 317 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcc
Confidence 78899999999999999988888889999999999999999988888888999999999999998876555444 5568
Q ss_pred CCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccc
Q 041976 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE 774 (901)
Q Consensus 695 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 774 (901)
+|+.|||++|+++. +++..|..+..|+.+.++.|.+.++....|.. +.+|+.|||++|.+++.
T Consensus 318 kL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~----------------lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 318 KLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG----------------LSSLHKLDLRSNELSWC 380 (873)
T ss_pred cceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHH----------------hhhhhhhcCcCCeEEEE
Confidence 89999999999985 55566788999999999999998887665544 78999999999999887
Q ss_pred cc---hhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCC
Q 041976 775 IS---QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSH 840 (901)
Q Consensus 775 ~~---~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 840 (901)
|- ..|.++++|+.|+|.+|++..+...+|..+.+||.|||.+|.|..+-|.+|..+ .|+.|-+..
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 64 458889999999999999998888899999999999999999999999999998 888887653
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-39 Score=323.81 Aligned_cols=475 Identities=28% Similarity=0.388 Sum_probs=234.4
Q ss_pred ccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCC
Q 041976 172 LTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS 251 (901)
Q Consensus 172 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n 251 (901)
|+.+.+++|.+. .+-..+.++..|.+|++.+| .++...|.+..+..++.++.++|++.++|+.++.+.+|+.|+.++|
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 444444444443 12223344444444444444 4443334444444444444555555555555555555555555555
Q ss_pred CCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCcc
Q 041976 252 QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSH 331 (901)
Q Consensus 252 ~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 331 (901)
.+. .+|++++.+..|+.|+..+|+++ ..|.++..+.+|..+++.+|++....|..-+++.|+++|...|.+. .+|..
T Consensus 125 ~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~ 201 (565)
T KOG0472|consen 125 ELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPE 201 (565)
T ss_pred cee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChh
Confidence 544 34444555555555555555554 4444455555555555555555544444333555555555554443 45555
Q ss_pred ccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC--CCCCCCEEEccCccCCCCCchhhhcccccC
Q 041976 332 GSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLT 409 (901)
Q Consensus 332 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 409 (901)
++.+.+|..|++..|++. ..| .|.++..|++++++.|++.-...+. .++++..||+++|+++ ..|..+.-+.+|+
T Consensus 202 lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~ 278 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLE 278 (565)
T ss_pred hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhh
Confidence 555555555555555554 333 3455555555555555544222221 3445555555555554 4455555555555
Q ss_pred ceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCC-CCccEEe-------cCCcCC---C--CCCh---
Q 041976 410 DLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPF-PKFSYLS-------LSACNI---S--AFPR--- 473 (901)
Q Consensus 410 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~L~~L~-------l~~~~l---~--~lp~--- 473 (901)
.||+++|.+++.. ..++++ +|+.|.+.+|++.......+..+- .-|++|. ++...- + ..|.
T Consensus 279 rLDlSNN~is~Lp--~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 279 RLDLSNNDISSLP--YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhcccCCccccCC--cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 5555555555552 345555 555555555544321100000000 0011110 010000 0 1111
Q ss_pred -hhccCCCCCEEeCCCCcccccCChhh-hhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcE
Q 041976 474 -FLRTQDELSYLDLSENKIDGQIPSWI-SEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRV 551 (901)
Q Consensus 474 -~l~~~~~L~~L~ls~n~l~~~~p~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 551 (901)
......+.+.|++++-+++. +|+.+ ......-...++++.|++..++...- .++ .-++.
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~-~lk-----------------elvT~ 416 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV-ELK-----------------ELVTD 416 (565)
T ss_pred cchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHhhhhhhhH-HHH-----------------HHHHH
Confidence 22344567788888877774 44443 33333445666666666655543210 000 00112
Q ss_pred EEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCc
Q 041976 552 LLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNE 631 (901)
Q Consensus 552 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 631 (901)
+.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+. .|+.|+++.|++. ..|..+-.+..++.+-.++|+
T Consensus 417 l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 417 LVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhh-hhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 23333333 355666666666777777766665 5666666665 5666666666665 455555555555555556666
Q ss_pred ccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCc
Q 041976 632 LGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH 681 (901)
Q Consensus 632 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 681 (901)
+....|..+.++.+|++||+.+|.+.. +|..++++++|++|++.+|+|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 665555556666666666666666533 3444566666666666555553
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=308.12 Aligned_cols=390 Identities=24% Similarity=0.291 Sum_probs=236.0
Q ss_pred CEEECCCCCCccCCCccccCC--CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCC-CCCCCCEEECC
Q 041976 244 GRLMLGYSQFVGPVPASLGNL--TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLS 320 (901)
Q Consensus 244 ~~L~L~~n~~~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~l~ 320 (901)
+.|+.+++.+...-...+... ..-++||+++|.+....+..|.++++|+.+++.+|.++ .+|.++ ...+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 456666665543222222221 23456888888887777777778888888888777776 344433 34457777777
Q ss_pred CCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCch
Q 041976 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPS 400 (901)
Q Consensus 321 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 400 (901)
+|.|+..-.+.+..++.|+.|||+.|.|+...-..|..-.++++|+|++|.++ .....
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It----------------------~l~~~ 191 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT----------------------TLETG 191 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc----------------------ccccc
Confidence 77776655666666666777777776666444444444455555555555554 34444
Q ss_pred hhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCCh-hhccCC
Q 041976 401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQD 479 (901)
Q Consensus 401 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~~~ 479 (901)
.|..+.+|..|.|+.|+++...+ ..|.++++|+.|+|..|++.......+ ..+++|+.|.+..|++..+.+ .|..+.
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltF-qgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTF-QGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred cccccchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhh-cCchhhhhhhhhhcCcccccCcceeeec
Confidence 44445555555555555554422 445555555555555555443322222 245555555555555555544 455666
Q ss_pred CCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcc
Q 041976 480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQF 559 (901)
Q Consensus 480 ~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l 559 (901)
++++|+++.|+++..-..|+ .++++|+.|++|+|.|..+....|. ..++|++|++++|++
T Consensus 270 kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~rih~d~Ws------------------ftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQRIHIDSWS------------------FTQKLKELDLSSNRI 329 (873)
T ss_pred ccceeecccchhhhhhcccc--cccchhhhhccchhhhheeecchhh------------------hcccceeEecccccc
Confidence 77777777777766666666 5666777777777766666554442 134566666666666
Q ss_pred ccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCC---cCccCCCccCEEEccCCcccccC
Q 041976 560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIP---GTFAESNWLRSLNLNNNELGGAI 636 (901)
Q Consensus 560 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~ 636 (901)
+...+..|..+..|++|.|++|++...--..+..+. +|++|||++|.++..+. ..|.++++|+.|++.+|++..+.
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls-sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS-SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh-hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 666666666677777777777777633333333333 77777777777765442 34667777777777777777666
Q ss_pred CccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcC
Q 041976 637 PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKF 680 (901)
Q Consensus 637 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 680 (901)
-.+|.++.+|+.|||.+|.|..+-|++|..+ .|+.|.+..-.|
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 6677777777777777777777777777776 677766654433
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=323.80 Aligned_cols=512 Identities=27% Similarity=0.333 Sum_probs=351.7
Q ss_pred eecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 041976 223 LDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFF 302 (901)
Q Consensus 223 L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 302 (901)
+|.+.+.++-+|..+-.-..++.|+++.|.+...--+.+.+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence 56777777788877766666888888888765322233445556899999988887 77888888888999999998888
Q ss_pred ccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCC
Q 041976 303 GEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK 382 (901)
Q Consensus 303 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 382 (901)
.....+.++.+|+++.|.+|.+. ..|..+..+++|+.|+++.|.+. .+|..+..++.++.+..++|......+. .
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~---~ 156 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ---T 156 (1081)
T ss_pred hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc---c
Confidence 65545788888999999888877 78888889999999999999887 7788888888888888888832222222 2
Q ss_pred CCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEe
Q 041976 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLS 462 (901)
Q Consensus 383 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 462 (901)
.++.+++..|.+.+.++..+..+.. .|+|.+|.+. . ..+..+.+|+.+....|++....
T Consensus 157 ~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls~l~--------------- 215 (1081)
T KOG0618|consen 157 SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQLSELE--------------- 215 (1081)
T ss_pred cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhcccceEE---------------
Confidence 3777777777777777766666655 6777777776 2 23455555555555555443111
Q ss_pred cCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCC
Q 041976 463 LSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPL 542 (901)
Q Consensus 463 l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~ 542 (901)
..-++++.|+.++|.++...+.
T Consensus 216 -------------~~g~~l~~L~a~~n~l~~~~~~--------------------------------------------- 237 (1081)
T KOG0618|consen 216 -------------ISGPSLTALYADHNPLTTLDVH--------------------------------------------- 237 (1081)
T ss_pred -------------ecCcchheeeeccCcceeeccc---------------------------------------------
Confidence 0112344444444433311110
Q ss_pred CCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCcc
Q 041976 543 PVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWL 622 (901)
Q Consensus 543 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 622 (901)
..+.+++++++++|++++ +|..++.+.+|+.+++.+|++. .+|..+.... +|+.|.+..|.+. -+|.......+|
T Consensus 238 -p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 238 -PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred -cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhh-hCCCccccccee
Confidence 124567777777777774 4478888888888888888886 7777777776 8888888888887 455566778888
Q ss_pred CEEEccCCcccccCCccccCCCc-ccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEc
Q 041976 623 RSLNLNNNELGGAIPQSLVNCTK-VEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDL 701 (901)
Q Consensus 623 ~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~L 701 (901)
++|+|..|++....+..|.-... |..|..+.|++.......=...+.|+.|.+.+|.++....... .++++|+.|+|
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHL 390 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeee
Confidence 88888888887443333443333 7777778887765543333356778889999998876654443 77889999999
Q ss_pred CCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhc
Q 041976 702 SINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGK 781 (901)
Q Consensus 702 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 781 (901)
++|++. .+|...+.++..|+.+++++|.++.++.. ...+..|++|...+|++. ..| .+.+
T Consensus 391 syNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~t-----------------va~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 391 SYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDT-----------------VANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred cccccc-cCCHHHHhchHHhHHHhcccchhhhhhHH-----------------HHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 999886 68888888888777777777776655421 011455666777777776 445 6777
Q ss_pred cCCCCeEeCCCCcCCCC-CCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCC
Q 041976 782 LHSLRLLNLSHNHFTGQ-IPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGP 851 (901)
Q Consensus 782 l~~L~~L~Ls~N~l~~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~ 851 (901)
+++|+.+|+|.|.++.. +|..... ++|++|||++|.-....-+.|..+.++...++.-| .+|++.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~~ 516 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDGN 516 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC----CCCccc
Confidence 77888888888877753 3433332 67788888887754455556666666666666655 455553
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.2e-34 Score=317.28 Aligned_cols=500 Identities=25% Similarity=0.308 Sum_probs=314.5
Q ss_pred EeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCccc-ccccccccchhhcccCCCCccEEEcCCCcCCCCCcccc
Q 041976 112 LNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEI-SFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINI 190 (901)
Q Consensus 112 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l-~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l 190 (901)
+|++..++.- ||..+-.-..++.|+++.|.+. ..|-++ .+. -+|+.||+++|.+. .+|..+
T Consensus 3 vd~s~~~l~~--ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~--------------v~L~~l~lsnn~~~-~fp~~i 64 (1081)
T KOG0618|consen 3 VDASDEQLEL--IPEQILNNEALQILNLRRNSLL-SRPLEFVEKR--------------VKLKSLDLSNNQIS-SFPIQI 64 (1081)
T ss_pred cccccccCcc--cchhhccHHHHHhhhccccccc-cCchHHhhhe--------------eeeEEeeccccccc-cCCchh
Confidence 4555555544 6666666666778888777654 223111 111 34777888777764 667777
Q ss_pred CCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEE
Q 041976 191 FHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLL 270 (901)
Q Consensus 191 ~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 270 (901)
..+.+|+.|+++.| .+...-.....+.+|+++.|.+|.++.+|.++..+++|++|++++|.+. .+|..+..++.++.+
T Consensus 65 t~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 65 TLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEEL 142 (1081)
T ss_pred hhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHH
Confidence 77777777777777 4432222345667777777777777777777777777777777777765 566666667777777
Q ss_pred ECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCc
Q 041976 271 HLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS 349 (901)
Q Consensus 271 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 349 (901)
..++|..... ++... ++++++..|.+.+.++. +..++. .|++++|.+. ...+..+.+|+.+....|++.
T Consensus 143 ~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls 212 (1081)
T KOG0618|consen 143 AASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS 212 (1081)
T ss_pred hhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc
Confidence 7776622212 22222 66666666666555444 444444 5666666654 233455566666666666654
Q ss_pred ccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhh
Q 041976 350 GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAK 429 (901)
Q Consensus 350 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 429 (901)
... -.-++|+.|+.+.|.++.........+|+.++++.|+++ .+|+|+..+.+|+.++..+|.++.. +..+..
T Consensus 213 ~l~----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~l--p~ri~~ 285 (1081)
T KOG0618|consen 213 ELE----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVAL--PLRISR 285 (1081)
T ss_pred eEE----ecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhh--HHHHhh
Confidence 321 133556666666666664333334455666666666665 3446666666666666666666443 233333
Q ss_pred cCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccE
Q 041976 430 LIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSY 509 (901)
Q Consensus 430 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~ 509 (901)
. .+|+.|.+..|.+..+|......+.|++|++..|++. ..|+.+...-..++..
T Consensus 286 ~-------------------------~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 286 I-------------------------TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNT 339 (1081)
T ss_pred h-------------------------hhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHH
Confidence 3 4555555556666666666666777777777777765 3444443333344666
Q ss_pred EEcCCCccCCccc---CCCCCCceeeccCccccCCCCC---CCCCCcEEEccCCccccccccccccCCCCCEEECCCCcC
Q 041976 510 VNLSHNFITKMKQ---IPWKNLGYLDLRSNLLQGPLPV---PPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRL 583 (901)
Q Consensus 510 L~ls~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 583 (901)
++.+.|++...+. ..++.|+.|.+.+|.++..... ....||.|++++|++.......+.++..|++|++|+|++
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 7777777766653 2356678888888888764433 267888888888888877777778888888888888888
Q ss_pred cccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcccc
Q 041976 584 NGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW 663 (901)
Q Consensus 584 ~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 663 (901)
+ .+|..+..+. .|++|...+|++. ..| .+..++.|+.+|++.|+++...-..-...++|++||+++|.-....-..
T Consensus 420 ~-~Lp~tva~~~-~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~ 495 (1081)
T KOG0618|consen 420 T-TLPDTVANLG-RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKT 495 (1081)
T ss_pred h-hhhHHHHhhh-hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhh
Confidence 7 7788887776 8888888888887 566 6788888888888888887443222222378888888888754444444
Q ss_pred ccCCCCCcEEEccCC
Q 041976 664 LGNLPELQVLVLRSN 678 (901)
Q Consensus 664 l~~l~~L~~L~L~~n 678 (901)
|..+..+...++.-+
T Consensus 496 l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 496 LKVLKSLSQMDITLN 510 (1081)
T ss_pred hHHhhhhhheecccC
Confidence 555555555555544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-32 Score=288.65 Aligned_cols=366 Identities=25% Similarity=0.330 Sum_probs=306.5
Q ss_pred ccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976 104 FHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ 183 (901)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~ 183 (901)
+-++..|-.|+++|+|+|..+|+....++.++.|.|....+. .+|.+++.+ .+|++|.+++|++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l--------------qkLEHLs~~HN~L~ 68 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL--------------QKLEHLSMAHNQLI 68 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH--------------hhhhhhhhhhhhhH
Confidence 456677888888888888778888889999999998888875 788888888 88999999998876
Q ss_pred CCCccccCCCCCCCEEeCCCCCCCC--ccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCc-c
Q 041976 184 GNFPINIFHLPNPQMIRLSQNPSLA--GKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA-S 260 (901)
Q Consensus 184 ~~~p~~l~~l~~L~~L~L~~n~~l~--~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~ 260 (901)
.+-..++.++.||.+++..| ++. |..+++-.+..|..||||+|++.+.|..+..-+++-+|+|++|+|.. +|. -
T Consensus 69 -~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~l 145 (1255)
T KOG0444|consen 69 -SVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSL 145 (1255)
T ss_pred -hhhhhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchH
Confidence 33456778889999999888 443 44445788899999999999999999999999999999999999984 554 4
Q ss_pred ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccC-CCCCCCCCCCEEECCCCCCC-CCCCccccCCcCC
Q 041976 261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI-PDIFNLTQVSFFDLSNNQLA-GPIPSHGSRLQNL 338 (901)
Q Consensus 261 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 338 (901)
+.+++.|-.|||++|++. .+|.-+..+.+|++|+|++|.+.-.. ..+-.+++|+.|.+++.+-+ ..+|.++..+.+|
T Consensus 146 finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL 224 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL 224 (1255)
T ss_pred HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh
Confidence 578999999999999998 67778899999999999999765321 12556778888888887533 3688999999999
Q ss_pred cEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC-CCCCCCEEEccCccCCCCCchhhhcccccCceecccCc
Q 041976 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNN 417 (901)
Q Consensus 339 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 417 (901)
..+|++.|.+. ..|+.+.++++|+.|+|++|+++...... ...+|+.|+++.|+++ .+|..+..+++|+.|.+.+|+
T Consensus 225 ~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 225 RDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred hhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 99999999998 88999999999999999999998654333 5578999999999998 889999999999999999998
Q ss_pred CCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCccc
Q 041976 418 FSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKID 492 (901)
Q Consensus 418 l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~ 492 (901)
++-..-|..++.+.+|+++..++|.+.... +..+.+++|+.|.++.|++..+|+.+.-++.|+.||+..|.-.
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 765544688999999999999999886433 3344789999999999999999999999999999999999755
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.1e-30 Score=274.66 Aligned_cols=371 Identities=23% Similarity=0.260 Sum_probs=304.3
Q ss_pred cCCCCCceeeCCCCcCC-CCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCC
Q 041976 129 SRFRNLTHFSLSDSNIN-CKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSL 207 (901)
Q Consensus 129 ~~l~~L~~L~Ls~~~~~-~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l 207 (901)
+-++..|-.|+++|.|+ +.+|.++..+ ++++.|.|....+. .+|..+++|.+|++|.+++| .+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qM--------------t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN-~L 67 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQM--------------TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHN-QL 67 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHh--------------hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhh-hh
Confidence 44666788899999999 4699999988 99999999998876 78999999999999999999 77
Q ss_pred CccCCCCCCCCCcceeecCCCCCc--cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccc
Q 041976 208 AGKFPANNWTSPIEYLDVSETSFS--ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL 285 (901)
Q Consensus 208 ~~~~~~~~~~~~L~~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 285 (901)
......++.++.||.+++..|++. .+|+.|..+..|+.|||++|++. +.|..+..-+++-+|+|++|+|..+...-|
T Consensus 68 ~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lf 146 (1255)
T KOG0444|consen 68 ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLF 146 (1255)
T ss_pred HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHH
Confidence 766666778899999999999987 78999999999999999999987 689999999999999999999985544567
Q ss_pred cCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCc-ccCChhhcCCCCCcE
Q 041976 286 SNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS-GTIPSWLFSLPLLEY 364 (901)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~ 364 (901)
-+++.|-+||||+|++...+|.+..+..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|..+..+.+|..
T Consensus 147 inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 7899999999999999988777999999999999999876444445567788889999887643 357888889999999
Q ss_pred EEccCCccccccCCC-CCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcc
Q 041976 365 VRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443 (901)
Q Consensus 365 L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 443 (901)
++++.|.+...+... .+++|+.|+|++|+|+. +....+.-.+|++|+++.|+++.. |+.+-.+++|+.|.+.+|++
T Consensus 227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~L--P~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 227 VDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVL--PDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccc--hHHHhhhHHHHHHHhccCcc
Confidence 999999887554433 77889999999998873 344556667889999999998877 46788888999999999888
Q ss_pred ccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCccc
Q 041976 444 SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQ 522 (901)
Q Consensus 444 ~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~ 522 (901)
+..........+.+|+.+...+|.+.-+|+.+..|..|+.|.++.|++. .+|+.+ .-++.|+.||+..|.--.+++
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaI--HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAI--HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhh--hhcCCcceeeccCCcCccCCC
Confidence 8766655555677788888888888888888888888888888888876 567666 445677777777776555544
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=3e-21 Score=240.59 Aligned_cols=314 Identities=19% Similarity=0.231 Sum_probs=221.6
Q ss_pred CCeEEEEEcCCCCCCC-CCCCCcccccCccCceEeCCCCCCCC-----CcCCccccCCC-CCceeeCCCCcCCCCCCccc
Q 041976 80 TGNVISLDLSCSWLHG-NIPTNTSLFHLLHLQTLNLSHNDFDY-----SEISSGFSRFR-NLTHFSLSDSNINCKIPYEI 152 (901)
Q Consensus 80 ~~~v~~l~L~~~~~~g-~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~~~~~l~~l~-~L~~L~Ls~~~~~~~~p~~l 152 (901)
+.+|.++.+.-..+.. .+.. .++..+++|+.|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..+
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~-~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHE-NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF 608 (1153)
T ss_pred cceeeEEEeccCccceeeecH-HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence 3567777665444332 1222 267889999999997664321 13677777764 6999999998775 778766
Q ss_pred ccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCC-Cc
Q 041976 153 SFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETS-FS 231 (901)
Q Consensus 153 ~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~-l~ 231 (901)
.. .+|++|+++++.+. .++..+..+++|+.|+|+++ .....+|.+..+++|++|++++|. +.
T Consensus 609 -~~--------------~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~-~~l~~ip~ls~l~~Le~L~L~~c~~L~ 671 (1153)
T PLN03210 609 -RP--------------ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGS-KNLKEIPDLSMATNLETLKLSDCSSLV 671 (1153)
T ss_pred -Cc--------------cCCcEEECcCcccc-ccccccccCCCCCEEECCCC-CCcCcCCccccCCcccEEEecCCCCcc
Confidence 34 78999999999876 56777888999999999998 555778888889999999999875 66
Q ss_pred cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCC
Q 041976 232 ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNL 311 (901)
Q Consensus 232 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l 311 (901)
.+|..++++++|++|++++|...+.+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+.. +|....+
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l 746 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRL 746 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccc
Confidence 889999999999999999987777788766 7899999999998766566643 4578899999998764 4554467
Q ss_pred CCCCEEECCCCCCC-------CCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC-CCCC
Q 041976 312 TQVSFFDLSNNQLA-------GPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKS 383 (901)
Q Consensus 312 ~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~ 383 (901)
++|++|.+.++... ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.. .+++
T Consensus 747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s 826 (1153)
T PLN03210 747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES 826 (1153)
T ss_pred cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence 88888888765421 111222233467888888888777778888888888888888887544334332 4556
Q ss_pred CCEEEccCccCCCCCchhhhcccccCceecccCcCCC
Q 041976 384 LQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSG 420 (901)
Q Consensus 384 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 420 (901)
|+.|++++|.....+|.. ..+|+.|+|++|.++.
T Consensus 827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE 860 (1153)
T ss_pred cCEEECCCCCcccccccc---ccccCEeECCCCCCcc
Confidence 666666655433333321 2344555555555443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.8e-21 Score=240.74 Aligned_cols=285 Identities=24% Similarity=0.233 Sum_probs=198.0
Q ss_pred CCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976 217 TSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL 296 (901)
Q Consensus 217 ~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (901)
..+|++|+++++.+..+|..+..+++|++|+++++...+.+| .+..+++|++|++++|.....+|..++.+++|++|++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 455666666666666666777777777777777766555555 3666777777777777666667777777777777777
Q ss_pred cCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccc-
Q 041976 297 SSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGH- 375 (901)
Q Consensus 297 s~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~- 375 (901)
++|...+.+|...++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.++.....
T Consensus 689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhcc
Confidence 77655555555336777777777777655455532 356777778777765 455443 567777777766432111
Q ss_pred ------cC--CCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcccccc
Q 041976 376 ------ID--EFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGN 447 (901)
Q Consensus 376 ------~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 447 (901)
.+ ...+++|+.|++++|...+.+|..++++++|+.|++++|...+..|. .. .+++|+.|++++|......
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-CC-CccccCEEECCCCCccccc
Confidence 11 11346899999999988778999999999999999999864444442 22 7899999999988543221
Q ss_pred ccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCC
Q 041976 448 TFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHN 515 (901)
Q Consensus 448 ~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n 515 (901)
....++++.|++++|.++.+|.++..+++|+.|++++|+-...+|..+ ..++.|+.+++++|
T Consensus 842 ----p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C 903 (1153)
T PLN03210 842 ----PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDC 903 (1153)
T ss_pred ----cccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCC
Confidence 123468999999999999999999999999999999976555566554 45566666666655
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-24 Score=217.36 Aligned_cols=85 Identities=26% Similarity=0.297 Sum_probs=60.4
Q ss_pred CccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEcc
Q 041976 597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLR 676 (901)
Q Consensus 597 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 676 (901)
+|++|+|++|+|+++-+.+|.+...+++|.|..|++.......|.++..|++|+|.+|+|+...|.+|..+.+|.+|++-
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 67777777777776667777777777777777777766666667777777777777777777777777777777777777
Q ss_pred CCcCc
Q 041976 677 SNKFH 681 (901)
Q Consensus 677 ~n~~~ 681 (901)
.|++.
T Consensus 355 ~Np~~ 359 (498)
T KOG4237|consen 355 SNPFN 359 (498)
T ss_pred cCccc
Confidence 76663
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=5.7e-21 Score=219.85 Aligned_cols=262 Identities=23% Similarity=0.294 Sum_probs=158.2
Q ss_pred CCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcc
Q 041976 480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQF 559 (901)
Q Consensus 480 ~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l 559 (901)
.-..|+++++.++ .+|..+. ..++.|++++|+++.++. .+++|++|++++|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~----------------------lp~~Lk~LdLs~N~L 254 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA----------------------LPPELRTLEVSGNQL 254 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCC----------------------CCCCCcEEEecCCcc
Confidence 3456677777666 4555441 245666666665555442 345555666666655
Q ss_pred ccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCcc
Q 041976 560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQS 639 (901)
Q Consensus 560 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 639 (901)
+.. |.. .++|+.|++++|.++ .+|. .+++|+.|++++|+++. +|. .+++|+.|++++|++++. |..
T Consensus 255 tsL-P~l---p~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l 320 (788)
T PRK15387 255 TSL-PVL---PPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL 320 (788)
T ss_pred Ccc-cCc---ccccceeeccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC
Confidence 532 221 245666666666665 3332 12356666666666653 332 234566666666666642 322
Q ss_pred ccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhH
Q 041976 640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLN 719 (901)
Q Consensus 640 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~ 719 (901)
..+|+.|++++|++++ +|.. ..+|++|++++|++++ +|.. .++|+.|++++|.+.+ +|..
T Consensus 321 ---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l------ 380 (788)
T PRK15387 321 ---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL------ 380 (788)
T ss_pred ---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc------
Confidence 1345566666666654 2321 1356677777777653 2221 2456667777776653 3320
Q ss_pred hhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCC
Q 041976 720 AMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQI 799 (901)
Q Consensus 720 ~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 799 (901)
+..|+.|++++|+|++ +|.. .++|+.|++++|++++ +
T Consensus 381 --------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-I 417 (788)
T PRK15387 381 --------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-L 417 (788)
T ss_pred --------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-C
Confidence 2456778888888875 4433 3578888999998885 5
Q ss_pred CccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCC
Q 041976 800 PSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH 849 (901)
Q Consensus 800 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 849 (901)
|..+ .+|+.|++++|+|+ .+|..+..+++|+.|+|++|+|+|.+|.
T Consensus 418 P~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 418 PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Ccch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 5433 46778899999987 5788888888999999999999887765
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=5.4e-23 Score=206.92 Aligned_cols=291 Identities=22% Similarity=0.239 Sum_probs=222.5
Q ss_pred eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCC-Cccc
Q 041976 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN-NRLN 609 (901)
Q Consensus 531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~-n~l~ 609 (901)
++.++-.++......|+....+++..|+|+.+.+..|..+++|+.|||++|.|+..-|++|.++. +|.+|-+.+ |+|+
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchh
Confidence 34444444544455578889999999999999999999999999999999999988899998887 666666555 9999
Q ss_pred ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976 610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689 (901)
Q Consensus 610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 689 (901)
......|+++.+++.|.+.-|++..+..+.|..+++|..|.+.+|.+..+.-..|..+.+++++.+..|++...
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd------ 203 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD------ 203 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc------
Confidence 88889999999999999999999999999999999999999999999877777899999999999999996421
Q ss_pred CCCCCCCc-----------------EEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhH
Q 041976 690 KESFPKLR-----------------ILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI 752 (901)
Q Consensus 690 ~~~l~~L~-----------------~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 752 (901)
++++.+. -..+.++++...-+..+...+.++..--.+.+. .+. ....
T Consensus 204 -CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~---------~d~------~cP~ 267 (498)
T KOG4237|consen 204 -CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF---------PDS------ICPA 267 (498)
T ss_pred -cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC---------cCC------cChH
Confidence 2333322 222233333322223332222222111111110 000 0011
Q ss_pred HHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCC
Q 041976 753 EMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTS 832 (901)
Q Consensus 753 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~ 832 (901)
.-++.+++|+.|+|++|.+++.-+.+|.++..+++|.|..|+|.......|.++..|+.|+|.+|+|+...|.+|..+.+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 22456889999999999999988999999999999999999998888888999999999999999999999999999999
Q ss_pred CCeeeCCCCcCc
Q 041976 833 LSVLNLSHNRLD 844 (901)
Q Consensus 833 L~~L~Ls~N~l~ 844 (901)
|..|+|-.|++.
T Consensus 348 l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 348 LSTLNLLSNPFN 359 (498)
T ss_pred eeeeehccCccc
Confidence 999999988863
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.2e-20 Score=215.08 Aligned_cols=264 Identities=23% Similarity=0.320 Sum_probs=133.9
Q ss_pred cEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccc
Q 041976 459 SYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLL 538 (901)
Q Consensus 459 ~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l 538 (901)
..|++++++++.+|..+. ++|+.|++.+|+++. +|.. .++|++|++++|+++.++.. .++|+.|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~l-----p~~Lk~LdLs~N~LtsLP~l-p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPAL-----PPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCC-----CCCCcEEEecCCccCcccCc-ccccceeeccCCch
Confidence 345555555555555443 256666666666653 3321 25566666666666655432 23444444444444
Q ss_pred cCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccC
Q 041976 539 QGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE 618 (901)
Q Consensus 539 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 618 (901)
.. +|..+.+|+.|++++|+++.. |. ..++|+.|++++|.++ .+|. .+..|+.|++++|.+++ +
T Consensus 275 ~~-Lp~lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~~-L------ 337 (788)
T PRK15387 275 TH-LPALPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-L------ 337 (788)
T ss_pred hh-hhhchhhcCEEECcCCccccc-cc---cccccceeECCCCccc-cCCC----CcccccccccccCcccc-c------
Confidence 32 222234444455555544422 21 1234444455554444 2222 11234444444444442 2
Q ss_pred CCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcE
Q 041976 619 SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRI 698 (901)
Q Consensus 619 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 698 (901)
|.. ..+|++|++++|+++.. |.. .++|+.|++++|.+.+ +|.. ..+|+.
T Consensus 338 ------------------P~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l-----~~~L~~ 386 (788)
T PRK15387 338 ------------------PTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL-----PSGLKE 386 (788)
T ss_pred ------------------ccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc-----ccccce
Confidence 211 12444555555544432 211 1344555555555542 2221 235666
Q ss_pred EEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchh
Q 041976 699 LDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQV 778 (901)
Q Consensus 699 L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 778 (901)
|++++|++++ +|.. ++.|+.|++++|++++ +|..
T Consensus 387 LdLs~N~Lt~-LP~l--------------------------------------------~s~L~~LdLS~N~Lss-IP~l 420 (788)
T PRK15387 387 LIVSGNRLTS-LPVL--------------------------------------------PSELKELMVSGNRLTS-LPML 420 (788)
T ss_pred EEecCCcccC-CCCc--------------------------------------------ccCCCEEEccCCcCCC-CCcc
Confidence 6666666653 3310 2345667777777764 4443
Q ss_pred hhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcC
Q 041976 779 IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTS 829 (901)
Q Consensus 779 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~ 829 (901)
. .+|+.|++++|+|+ .+|..+.++++|+.|+|++|++++..|..+..
T Consensus 421 ~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 421 P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 2 35667788888877 56777777888888888888888777666543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=6.7e-19 Score=204.49 Aligned_cols=341 Identities=19% Similarity=0.245 Sum_probs=217.2
Q ss_pred CCCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCC----CCCCCCCcCccc----------------eeecCCCCeE
Q 041976 24 AKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMIS----WKKDTNCCSWDG----------------VTCDMATGNV 83 (901)
Q Consensus 24 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~----w~~~~~~c~w~g----------------v~c~~~~~~v 83 (901)
+.+-.++|...+++..+.+..|. ...+ |..++++|.-+. |.|. .+.|
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~-----------~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~v 123 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPA-----------YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSV 123 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCc-----------hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCcc
Confidence 34567889999999999997654 4455 998889997655 5564 3567
Q ss_pred EEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCC--cCCccc-----cCCCCCceeeCCCCcCCCCCCccccccc
Q 041976 84 ISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYS--EISSGF-----SRFRNLTHFSLSDSNINCKIPYEISFLK 156 (901)
Q Consensus 84 ~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~--~~~~~l-----~~l~~L~~L~Ls~~~~~~~~p~~l~~l~ 156 (901)
+.+...+..............+....- =+=..+.-.+. .--..+ +-..+...|+++++.++ .+|..+.
T Consensus 124 t~l~~~g~~~~~~~~~~~~~~~~~~~w-~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--- 198 (754)
T PRK15370 124 TYTRVTESEQASSASGSKDAVNYELIW-SEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--- 198 (754)
T ss_pred cccccccccccccCCCCCChhhHHHHH-HHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc---
Confidence 777665533222111000000000000 00000000000 000001 11245667777777766 4564432
Q ss_pred ccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCcc
Q 041976 157 MSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDS 236 (901)
Q Consensus 157 ~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~ 236 (901)
+.|+.|++++|.++ .+|..+. .+|++|++++| .++ .+|. ....+|+.|++++|.+..+|..
T Consensus 199 -------------~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N-~Lt-sLP~-~l~~~L~~L~Ls~N~L~~LP~~ 259 (754)
T PRK15370 199 -------------EQITTLILDNNELK-SLPENLQ--GNIKTLYANSN-QLT-SIPA-TLPDTIQEMELSINRITELPER 259 (754)
T ss_pred -------------cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCC-ccc-cCCh-hhhccccEEECcCCccCcCChh
Confidence 66778888888777 4555443 47888888887 665 3442 1234688888888888888876
Q ss_pred ccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCE
Q 041976 237 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSF 316 (901)
Q Consensus 237 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~ 316 (901)
+. ++|++|++++|++. .+|..+. ++|+.|++++|+++. +|..+. .+|++|++++|.++...+.+. ++|+.
T Consensus 260 l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~ 329 (754)
T PRK15370 260 LP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETLP--PGLKT 329 (754)
T ss_pred Hh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCcccc--cccee
Confidence 64 47888888888887 4676554 478888888888873 554443 468888888888875433232 57888
Q ss_pred EECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCC
Q 041976 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 396 (901)
Q Consensus 317 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~ 396 (901)
|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.++..++ .....|+.|++++|+++
T Consensus 330 L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~-~l~~sL~~LdLs~N~L~- 401 (754)
T PRK15370 330 LEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPE-NLPAALQIMQASRNNLV- 401 (754)
T ss_pred ccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCH-hHHHHHHHHhhccCCcc-
Confidence 8888888874 665553 68889999998887 456554 3678899999988875433 33346888999999887
Q ss_pred CCchhhh----cccccCceecccCcCC
Q 041976 397 SIPSSIF----ELVNLTDLQLDSNNFS 419 (901)
Q Consensus 397 ~~~~~~~----~l~~L~~L~L~~n~l~ 419 (901)
.+|..+. .++.+..+++.+|.+.
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4555443 4577889999999886
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1e-18 Score=203.05 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=27.7
Q ss_pred ceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCcc----ccCCCCCCEEeCCCCccC
Q 041976 760 VFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSS----LGNLAKLESLDLSSNNVA 820 (901)
Q Consensus 760 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~L~~L~~L~Ls~N~l~ 820 (901)
.|+.|++++|.++. +|..+. .+|+.|++++|++++ +|.. ++.++.+..|++.+|.++
T Consensus 368 ~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 368 TITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 44555555555552 333332 245555566665552 2322 223355556666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=2.1e-18 Score=187.28 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=39.2
Q ss_pred cceeEEEccccccccccchhhh-c----cCCCCeEeCCCCcCCC----CCCccccCCCCCCEEeCCCCccCCC----CCc
Q 041976 759 TVFTTIDFSSNGFDGEISQVIG-K----LHSLRLLNLSHNHFTG----QIPSSLGNLAKLESLDLSSNNVAGK----IPK 825 (901)
Q Consensus 759 ~~L~~L~Ls~N~l~~~~~~~l~-~----l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~----~p~ 825 (901)
++|++|++++|.+++.....+. . .+.|++|++++|.++. .+...+..+++|+.+|+++|.++.. ...
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 4455555555555542222221 1 2455555555555541 1223344445555555555555533 222
Q ss_pred CCcCC-CCCCeeeCCCCc
Q 041976 826 PLTSL-TSLSVLNLSHNR 842 (901)
Q Consensus 826 ~l~~l-~~L~~L~Ls~N~ 842 (901)
.+... +.|+++++.+|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 33333 455555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=6.9e-18 Score=183.25 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCCCEEEccCccCCC----CCchhhhcccccCceecccCcCCCccch---hhhhhc-CCCcEEEccCCc
Q 041976 382 KSLQNIYLSNNRLQG----SIPSSIFELVNLTDLQLDSNNFSGIAEP---YMFAKL-IKLKYLYLSHNS 442 (901)
Q Consensus 382 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l-~~L~~L~L~~n~ 442 (901)
+.|++|++++|.+++ .+...+..+++|+.+++++|.+...... ..+... +.|+++++.+|+
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 344444444444431 1223344445666666666666543210 122223 466666666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3e-18 Score=152.98 Aligned_cols=165 Identities=27% Similarity=0.494 Sum_probs=131.8
Q ss_pred ccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc
Q 041976 102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI 181 (901)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~ 181 (901)
.+..+.+++.|.||+|.++. +|+.+..+.+|+.|++++|++. ++|.+++.+ ++|++|+++-|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl--------------~klr~lnvgmnr 90 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSL--------------PKLRILNVGMNR 90 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhc--------------hhhhheecchhh
Confidence 57788889999999999887 7888999999999999999987 789999998 999999999888
Q ss_pred CCCCCccccCCCCCCCEEeCCCCCCCC-ccCCC-CCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCc
Q 041976 182 LQGNFPINIFHLPNPQMIRLSQNPSLA-GKFPA-NNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA 259 (901)
Q Consensus 182 ~~~~~p~~l~~l~~L~~L~L~~n~~l~-~~~~~-~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 259 (901)
+. ..|..|+.++.|+.|||.+| ++. ..+|. +-.++.|+.|.++.|.++-+|..++++++|+.|.+..|.+. .+|.
T Consensus 91 l~-~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpk 167 (264)
T KOG0617|consen 91 LN-ILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPK 167 (264)
T ss_pred hh-cCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcH
Confidence 76 78899999999999999998 555 44553 45677778888888888888877888888887777777766 4677
Q ss_pred cccCCCCCCEEECCCCcCCCCCCccccC
Q 041976 260 SLGNLTQLTLLHLMHNNFSGHIPSSLSN 287 (901)
Q Consensus 260 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 287 (901)
.++.+++|++|.+.+|+++ .+|..+++
T Consensus 168 eig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHhcccceee-ecChhhhh
Confidence 7777777777777777766 44444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.6e-17 Score=148.34 Aligned_cols=157 Identities=25% Similarity=0.407 Sum_probs=98.8
Q ss_pred CCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEE
Q 041976 215 NWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYL 294 (901)
Q Consensus 215 ~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 294 (901)
-.+.+++.|.||+|+++.+|..+..+++|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3344555566666666666666666666666666666665 45666666666666666666665 566666666666666
Q ss_pred EccCCcCcc-cCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcc
Q 041976 295 DLSSNSFFG-EIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL 372 (901)
Q Consensus 295 ~Ls~n~l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 372 (901)
|+.+|++.. ..|+ ++.++.|+.|++++|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 666666543 3344 556666666666666665 56666666666666666666665 4566666666666666666666
Q ss_pred ccc
Q 041976 373 SGH 375 (901)
Q Consensus 373 ~~~ 375 (901)
+..
T Consensus 186 ~vl 188 (264)
T KOG0617|consen 186 TVL 188 (264)
T ss_pred eec
Confidence 533
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=4.1e-14 Score=164.60 Aligned_cols=154 Identities=27% Similarity=0.408 Sum_probs=130.3
Q ss_pred CCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCc----CccceeecC--CC--CeEEEEEcCCCCCCCC
Q 041976 25 KHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCC----SWDGVTCDM--AT--GNVISLDLSCSWLHGN 96 (901)
Q Consensus 25 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c----~w~gv~c~~--~~--~~v~~l~L~~~~~~g~ 96 (901)
..+.++|.+||+++|+.+..+. ..+|.. +.|| .|.||.|.. .. .+|+.|+|+++.+.|.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~------------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ 433 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL------------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF 433 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc------------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCcccc
Confidence 4567789999999999986432 237963 4443 799999953 22 2699999999999999
Q ss_pred CCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEE
Q 041976 97 IPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLS 176 (901)
Q Consensus 97 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~ 176 (901)
+++ .+..+++|++|+|++|.+.+. +|..++.+++|++|+|++|.++|.+|..++.+ ++|++|+
T Consensus 434 ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L--------------~~L~~L~ 496 (623)
T PLN03150 434 IPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQL--------------TSLRILN 496 (623)
T ss_pred CCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcC--------------CCCCEEE
Confidence 998 899999999999999999987 99999999999999999999999999999999 9999999
Q ss_pred cCCCcCCCCCccccCCC-CCCCEEeCCCCCCCC
Q 041976 177 LSDCILQGNFPINIFHL-PNPQMIRLSQNPSLA 208 (901)
Q Consensus 177 Ls~~~~~~~~p~~l~~l-~~L~~L~L~~n~~l~ 208 (901)
|++|.++|.+|..++.. .++..+++.+|+.+.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 99999999999988764 577888998884333
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=2.5e-12 Score=149.84 Aligned_cols=118 Identities=40% Similarity=0.668 Sum_probs=107.1
Q ss_pred ceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCC
Q 041976 760 VFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLS 839 (901)
Q Consensus 760 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 839 (901)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|||++|++++.+|+.+..+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCC--CCCCcccccccCCcCCCCCCCCCCCC
Q 041976 840 HNRLDGPIPHGP--QFNTFQEDSYIGNLGLCGFPLTKKCG 877 (901)
Q Consensus 840 ~N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg~~l~~~c~ 877 (901)
+|+++|.+|... .+.......+.+|+++||.|-...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 22334566789999999988667774
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.3e-10 Score=127.91 Aligned_cols=200 Identities=33% Similarity=0.426 Sum_probs=135.7
Q ss_pred eEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCC-CccEEEcCCCcCCCCCccc
Q 041976 111 TLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSS-SLTSLSLSDCILQGNFPIN 189 (901)
Q Consensus 111 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~-~L~~L~Ls~~~~~~~~p~~ 189 (901)
.++++.+.+.. -+..+..++.++.|++.++.++ .+|...+.+ . +|+.|++++|.+. .+|..
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~--------------~~nL~~L~l~~N~i~-~l~~~ 158 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLL--------------KSNLKELDLSDNKIE-SLPSP 158 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccc--------------hhhcccccccccchh-hhhhh
Confidence 45666665533 1233445566777777777665 555555544 4 6777777777665 34456
Q ss_pred cCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCE
Q 041976 190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTL 269 (901)
Q Consensus 190 l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 269 (901)
++.+++|+.|++++| .+....+.....+.|+.|++++|.+..+|..+.....|++|.+++|.+. ..+..+.++.++..
T Consensus 159 ~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~ 236 (394)
T COG4886 159 LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSG 236 (394)
T ss_pred hhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccc
Confidence 677777777777777 5543333233677788888888888888877777777888888888533 35566777788888
Q ss_pred EECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccc
Q 041976 270 LHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHG 332 (901)
Q Consensus 270 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 332 (901)
+.+.+|++. .++..++.+.++++|++++|.++.... ++.+.+++.|+++++.+....+...
T Consensus 237 l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cccCCceee-eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence 888877776 336677788888888888888875444 7778888888888888776555443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=7.2e-12 Score=133.16 Aligned_cols=175 Identities=27% Similarity=0.363 Sum_probs=103.3
Q ss_pred cCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCC
Q 041976 105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG 184 (901)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~ 184 (901)
.+.--...||+.|.+.. +|..+..|-.|+.+.|..|.+- .+|..++++ ..|.+|||+.|+++
T Consensus 73 ~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L--------------~~lt~l~ls~NqlS- 134 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNL--------------EALTFLDLSSNQLS- 134 (722)
T ss_pred cccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhh--------------hHHHHhhhccchhh-
Confidence 34455566777777765 6666777777777777666654 566666666 66777777777665
Q ss_pred CCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCC
Q 041976 185 NFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNL 264 (901)
Q Consensus 185 ~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 264 (901)
.+|..+..|+ |+.|-+++| +++..-+.++....|..||.+.|.+..+|..++.+.+|+.|.+..|++. .+|..+..|
T Consensus 135 ~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L 211 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL 211 (722)
T ss_pred cCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence 4455554443 555555555 4443333344555555556666666666666666666666666655554 344445433
Q ss_pred CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 041976 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFF 302 (901)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 302 (901)
.|..||++.|+++ .+|-.|.+|+.|++|-|.+|.+.
T Consensus 212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 2555666666555 55555666666666666655555
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=5.4e-12 Score=134.10 Aligned_cols=175 Identities=29% Similarity=0.402 Sum_probs=101.5
Q ss_pred CCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcc
Q 041976 218 SPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLS 297 (901)
Q Consensus 218 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 297 (901)
.--...|++.|++.++|..+..+..|+.+.+..|.+. .+|.+++++..|+.||++.|+++ .+|..+..|+ |+.|-++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3345566666777766666666666666666666655 45666666666666666666665 4455555443 5555555
Q ss_pred CCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccC
Q 041976 298 SNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377 (901)
Q Consensus 298 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 377 (901)
+|+++...++++.+..|.+||.+.|.+. .+|.. ++.+.+|+.|.+..|++....+
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsq------------------------l~~l~slr~l~vrRn~l~~lp~ 206 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQ------------------------LGYLTSLRDLNVRRNHLEDLPE 206 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhh-hchHH------------------------hhhHHHHHHHHHhhhhhhhCCH
Confidence 5555543333444445555555555444 34444 4444444444444444443333
Q ss_pred CCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCc
Q 041976 378 EFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI 421 (901)
Q Consensus 378 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 421 (901)
+...-.|..||++.|++. .+|-.|.+|..|++|.|.+|.+...
T Consensus 207 El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 207 ELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 333334556666666665 6777788888888888888877754
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.2e-10 Score=127.92 Aligned_cols=174 Identities=34% Similarity=0.439 Sum_probs=89.0
Q ss_pred CCcceeecCCCCCccCCccccCCC-CcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976 218 SPIEYLDVSETSFSELPDSIGNLK-LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL 296 (901)
Q Consensus 218 ~~L~~L~Ls~~~l~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (901)
+.++.|++.++.+.++|......+ +|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|...+..++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 455555555555555555555553 5666666666554 33344555566666666666555 33433335555666666
Q ss_pred cCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccccc
Q 041976 297 SSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI 376 (901)
Q Consensus 297 s~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 376 (901)
++|++....+.+.....|+++.+++|++. ..+..+..+.++..+.+.+|++.. .+..++.++.+++|++++|.++...
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccccccc
Confidence 66655533332334444555555555322 244445555555555555555442 2444555555555555555554433
Q ss_pred CCCCCCCCCEEEccCccCC
Q 041976 377 DEFPSKSLQNIYLSNNRLQ 395 (901)
Q Consensus 377 ~~~~~~~L~~L~L~~n~l~ 395 (901)
......+++.+++++|.+.
T Consensus 272 ~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 272 SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccCccCEEeccCcccc
Confidence 3223444444444444444
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3e-11 Score=124.72 Aligned_cols=208 Identities=27% Similarity=0.315 Sum_probs=115.2
Q ss_pred cCCCCCCEEECCCCcCCCCCC--ccccCCCCCCEEEccCCcCcccCCC---CCCCCCCCEEECCCCCCCCCCCccc-cCC
Q 041976 262 GNLTQLTLLHLMHNNFSGHIP--SSLSNLVQLTYLDLSSNSFFGEIPD---IFNLTQVSFFDLSNNQLAGPIPSHG-SRL 335 (901)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~-~~l 335 (901)
.++.+|+...|.++.+. ..+ .....|++++.|||+.|-+....+. +..+++|+.|+++.|++........ ..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46778888888887765 323 3456678888888888766543332 4467777777777777653222111 133
Q ss_pred cCCcEEECcCCcCcccC-ChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecc
Q 041976 336 QNLVLIRLNNNSFSGTI-PSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLD 414 (901)
Q Consensus 336 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 414 (901)
++|+.|.++.|.++... ......+|+|+.|++..| ............+..|+.|+|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N----------------------~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN----------------------EIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc----------------------cccceecchhhhhhHHhhcccc
Confidence 45555555555554221 112223444444444444 2211222233445566667777
Q ss_pred cCcCCCccchhhhhhcCCCcEEEccCCcccccccccc-----CCCCCCccEEecCCcCCCCCCh--hhccCCCCCEEeCC
Q 041976 415 SNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKI-----DSPFPKFSYLSLSACNISAFPR--FLRTQDELSYLDLS 487 (901)
Q Consensus 415 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~L~~L~ls 487 (901)
+|++.........+.++.|+.|+++.+.+........ ...+++|++|++..|++..++. .+..+++|+.|.+.
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 7666655444456666677777776666654433332 3356667777777766655543 34445555555555
Q ss_pred CCccc
Q 041976 488 ENKID 492 (901)
Q Consensus 488 ~n~l~ 492 (901)
.|.+.
T Consensus 335 ~n~ln 339 (505)
T KOG3207|consen 335 LNYLN 339 (505)
T ss_pred ccccc
Confidence 55554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=6.5e-11 Score=115.91 Aligned_cols=135 Identities=29% Similarity=0.280 Sum_probs=75.0
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEE
Q 041976 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342 (901)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 342 (901)
....|+++|+++|.++ .+.+++.-.+.++.|++++|.+... ..+..+++|+.||+++|.++ .+..|-.++.++++|.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 3445666666666665 4445555556666666666666532 22555566666666666555 3344444555555555
Q ss_pred CcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCcc
Q 041976 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA 422 (901)
Q Consensus 343 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 422 (901)
|+.|.+.. -+.++.+-+|..||+++|++... ..-..+++++.|+.+.|.+|.+.+..
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~l---------------------deV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEEL---------------------DEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhH---------------------HHhcccccccHHHHHhhcCCCccccc
Confidence 55555432 12344444455555555444311 11235677888888888888887764
Q ss_pred c
Q 041976 423 E 423 (901)
Q Consensus 423 ~ 423 (901)
.
T Consensus 416 d 416 (490)
T KOG1259|consen 416 D 416 (490)
T ss_pred h
Confidence 3
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=1.4e-11 Score=123.86 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCcceeecCCCCCccCC-----ccccCCCCcCEEECCCCCCccC----CCccccCCCCCCEEECCCCcCCCC----CCcc
Q 041976 218 SPIEYLDVSETSFSELP-----DSIGNLKLLGRLMLGYSQFVGP----VPASLGNLTQLTLLHLMHNNFSGH----IPSS 284 (901)
Q Consensus 218 ~~L~~L~Ls~~~l~~lp-----~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~ 284 (901)
+.||++....|.+..-+ ..+...+.|+.+.+..|.|... +..++..+++|++||+..|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 45566666666555332 2344455566666655554321 112334455555555555544422 1122
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccc-----cCCcCCcEEECcCCcCccc----CChh
Q 041976 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHG-----SRLQNLVLIRLNNNSFSGT----IPSW 355 (901)
Q Consensus 285 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~ 355 (901)
+. .+++|+++++++|.+.......+ ...++|++|.+.+|.++.. +...
T Consensus 237 L~-----------------------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 237 LS-----------------------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred hc-----------------------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 33 34445555555554443222211 2245566666666655422 1223
Q ss_pred hcCCCCCcEEEccCCcc
Q 041976 356 LFSLPLLEYVRLSDNQL 372 (901)
Q Consensus 356 l~~l~~L~~L~L~~n~l 372 (901)
+...+.|+.|++++|.+
T Consensus 294 ~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcchhhHHhcCCcccc
Confidence 34466667777777766
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=3.6e-10 Score=134.35 Aligned_cols=81 Identities=26% Similarity=0.261 Sum_probs=49.7
Q ss_pred cCceEeCCCCC--CCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCC
Q 041976 108 HLQTLNLSHND--FDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGN 185 (901)
Q Consensus 108 ~L~~L~Ls~n~--~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~ 185 (901)
.|++|=+..|. +... -..+|..++.|++|||++|.-.+++|++|+.| -+|++|+++++.+. .
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L--------------i~LryL~L~~t~I~-~ 609 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL--------------VHLRYLDLSDTGIS-H 609 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhh--------------hhhhcccccCCCcc-c
Confidence 56666666654 2221 22346666666666666666556666666666 66666666666665 5
Q ss_pred CccccCCCCCCCEEeCCCC
Q 041976 186 FPINIFHLPNPQMIRLSQN 204 (901)
Q Consensus 186 ~p~~l~~l~~L~~L~L~~n 204 (901)
+|..++++.+|.+|++..+
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred cchHHHHHHhhheeccccc
Confidence 6666666666666666655
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.9e-10 Score=117.61 Aligned_cols=184 Identities=27% Similarity=0.246 Sum_probs=110.5
Q ss_pred cCCCCCCEEEccCCcCcccCC--CCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCc
Q 041976 286 SNLVQLTYLDLSSNSFFGEIP--DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363 (901)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 363 (901)
+++.+|+...|.++....... ....+++++.|||+.|-+..-. .+-.....+|+|+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----------------------~v~~i~eqLp~Le 175 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----------------------PVLKIAEQLPSLE 175 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----------------------HHHHHHHhcccch
Confidence 355666666666665442211 1334555555555555433210 1112334556666
Q ss_pred EEEccCCccccccCCC---CCCCCCEEEccCccCCCC-CchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEcc
Q 041976 364 YVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGS-IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS 439 (901)
Q Consensus 364 ~L~L~~n~l~~~~~~~---~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 439 (901)
.|+++.|++....... .+++|+.|.++.|.++.. +......+++|+.|+|+.|...... ......+..|++|+|+
T Consensus 176 ~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 176 NLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLS 254 (505)
T ss_pred hcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhcccc
Confidence 6666666554333222 456778888888877632 2333457899999999999533322 2456667888999999
Q ss_pred CCccccccccccCCCCCCccEEecCCcCCCCC--Chh-----hccCCCCCEEeCCCCccc
Q 041976 440 HNSLSLGNTFKIDSPFPKFSYLSLSACNISAF--PRF-----LRTQDELSYLDLSENKID 492 (901)
Q Consensus 440 ~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~l--p~~-----l~~~~~L~~L~ls~n~l~ 492 (901)
+|++...........+|.|+.|.++.|++.++ |+. ...+++|++|+++.|++.
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 99887666555556788888888888888744 332 345566777777776664
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-10 Score=117.49 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=67.5
Q ss_pred CCCCCEEEccCCcCcccCCC-----CCCCCCCCEEECCCCCCCCC----CCccccCCcCCcEEECcCCcCccc----CCh
Q 041976 288 LVQLTYLDLSSNSFFGEIPD-----IFNLTQVSFFDLSNNQLAGP----IPSHGSRLQNLVLIRLNNNSFSGT----IPS 354 (901)
Q Consensus 288 l~~L~~L~Ls~n~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 354 (901)
-+.|+++...+|++...... +...+.|+.+.++.|.|... +...+..+++|++|||.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 34566666666665432221 33456666666666665421 223456667777777777766532 223
Q ss_pred hhcCCCCCcEEEccCCccccccCCC-------CCCCCCEEEccCccCCCC----CchhhhcccccCceecccCcC
Q 041976 355 WLFSLPLLEYVRLSDNQLSGHIDEF-------PSKSLQNIYLSNNRLQGS----IPSSIFELVNLTDLQLDSNNF 418 (901)
Q Consensus 355 ~l~~l~~L~~L~L~~n~l~~~~~~~-------~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 418 (901)
.+..+++|++|++++|.+...-... ..++|+.|.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4555666777777776655322111 234555555555555422 112223344455555555544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.8e-10 Score=110.67 Aligned_cols=132 Identities=25% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceec
Q 041976 334 RLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQL 413 (901)
Q Consensus 334 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 413 (901)
..+.|+++||++|.|+ .+.+...-.|.++.|+++.|.+...-....+++|+.||+++|.++ .+..|-..+-+++.|.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 3455666666666665 344445556666666666666554333335555666666666554 23334445555666666
Q ss_pred ccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccc
Q 041976 414 DSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDG 493 (901)
Q Consensus 414 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~ 493 (901)
+.|.+... ..++.+-+|..|++++|++...... ..++++|.|+.+.+.+|.+.+
T Consensus 360 a~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV-----------------------~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEV-----------------------NHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh---hhhHhhhhheeccccccchhhHHHh-----------------------cccccccHHHHHhhcCCCccc
Confidence 66655544 3455555555555555554422211 245556666666666666653
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=2.1e-09 Score=102.15 Aligned_cols=86 Identities=33% Similarity=0.364 Sum_probs=31.6
Q ss_pred CCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhh-hcccccCceecccCcCCCccchhhhhhcCCCcEEE
Q 041976 359 LPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI-FELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLY 437 (901)
Q Consensus 359 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 437 (901)
+.+|+.|++++|.+........++.|+.|++++|+++. +...+ ..+++|++|++++|++........+..+++|++|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 34444444444444433222234555555555555553 33334 35677777777777777665556677777777777
Q ss_pred ccCCcccc
Q 041976 438 LSHNSLSL 445 (901)
Q Consensus 438 L~~n~l~~ 445 (901)
+.+|++..
T Consensus 120 L~~NPv~~ 127 (175)
T PF14580_consen 120 LEGNPVCE 127 (175)
T ss_dssp -TT-GGGG
T ss_pred ccCCcccc
Confidence 77777653
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=9.7e-10 Score=104.40 Aligned_cols=81 Identities=28% Similarity=0.345 Sum_probs=16.1
Q ss_pred CCcceeecCCCCCccCCcccc-CCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccc-cCCCCCCEEE
Q 041976 218 SPIEYLDVSETSFSELPDSIG-NLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL-SNLVQLTYLD 295 (901)
Q Consensus 218 ~~L~~L~Ls~~~l~~lp~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ 295 (901)
..+++|+|++|.|+.+ +.++ .+.+|+.|++++|.+... +.+..+++|++|++++|.++.. ...+ ..+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 3445555555555444 2333 345555555555555432 2344455555555555555522 2222 2345555555
Q ss_pred ccCCcCc
Q 041976 296 LSSNSFF 302 (901)
Q Consensus 296 Ls~n~l~ 302 (901)
+++|++.
T Consensus 95 L~~N~I~ 101 (175)
T PF14580_consen 95 LSNNKIS 101 (175)
T ss_dssp -TTS---
T ss_pred CcCCcCC
Confidence 5555544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=1.4e-09 Score=84.82 Aligned_cols=60 Identities=43% Similarity=0.638 Sum_probs=37.0
Q ss_pred CCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcC
Q 041976 784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843 (901)
Q Consensus 784 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 843 (901)
+|++|++++|+++.+.+..|.++++|++|++++|+++.+.|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666655555666666666666666666665566666666666666666654
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=3.5e-09 Score=126.05 Aligned_cols=262 Identities=21% Similarity=0.235 Sum_probs=150.1
Q ss_pred CCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCC--CccCCCccccCCCCCCEEECCCCcCCCCCCccccCC
Q 041976 211 FPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQ--FVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNL 288 (901)
Q Consensus 211 ~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~--~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 288 (901)
+|........|...+-++.+..++..... +.|++|-+..|. +.......|..++.|++||+++|.--+.+|+.++.+
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 44445556778888888888777655443 368888887775 333333346678888888888877767788888888
Q ss_pred CCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCc--ccCChhhcCCCCCcEEE
Q 041976 289 VQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS--GTIPSWLFSLPLLEYVR 366 (901)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~ 366 (901)
.+||+|+++++.+...++.+.++..|.+|++..+.....+|.....+++|++|.+...... ...-..+..+.+|+.+.
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 8888888888887755555777888888888777655455555666777777777655421 11222233334444333
Q ss_pred ccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccC----ceecccCcCCCccchhhhhhcCCCcEEEccCCc
Q 041976 367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLT----DLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442 (901)
Q Consensus 367 L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 442 (901)
....... +...+..++.|. .+.+..+..... ...+..+.+|+.|.+.++.
T Consensus 675 ~~~~s~~------------------------~~e~l~~~~~L~~~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 675 ITISSVL------------------------LLEDLLGMTRLRSLLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCG 728 (889)
T ss_pred eecchhH------------------------hHhhhhhhHHHHHHhHhhhhccccccee--ecccccccCcceEEEEcCC
Confidence 3221110 000111111111 112111221111 1245555666666666655
Q ss_pred cccccccc----cCC-CCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhh
Q 041976 443 LSLGNTFK----IDS-PFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWI 499 (901)
Q Consensus 443 l~~~~~~~----~~~-~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~ 499 (901)
+....... ... .++++..+.+.+|.....+.|....++|+.|.+..|.....+.+..
T Consensus 729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 729 ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred CchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH
Confidence 54222110 000 1445666666666666666677777888888888887655544443
No 40
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.78 E-value=6.8e-09 Score=73.70 Aligned_cols=40 Identities=38% Similarity=0.837 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCC--CCCcCccceeec
Q 041976 29 REQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKD--TNCCSWDGVTCD 77 (901)
Q Consensus 29 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~--~~~c~w~gv~c~ 77 (901)
++|++||++||+++..++.+ .+.+|... .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~---------~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSG---------VLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-C---------CCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCc---------ccccCCCcCCCCCeeeccEEeC
Confidence 68999999999999865432 89999976 799999999995
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=3.9e-09 Score=82.27 Aligned_cols=61 Identities=33% Similarity=0.488 Sum_probs=57.4
Q ss_pred cceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCcc
Q 041976 759 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNV 819 (901)
Q Consensus 759 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l 819 (901)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999988888999999999999999999999999999999999999999986
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-09 Score=121.66 Aligned_cols=196 Identities=31% Similarity=0.323 Sum_probs=84.0
Q ss_pred ccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCE
Q 041976 237 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSF 316 (901)
Q Consensus 237 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~ 316 (901)
+..+++|+.|++.+|.+.+. ...+..+++|++|++++|.|+... .+..++.|+.|++++|.++ .+..+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccCCccchhhhc
Confidence 34444444444444444321 111333444444444444444321 1333444444555554444 2222333444555
Q ss_pred EECCCCCCCCCCC-ccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCC--CCEEEccCcc
Q 041976 317 FDLSNNQLAGPIP-SHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKS--LQNIYLSNNR 393 (901)
Q Consensus 317 L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--L~~L~L~~n~ 393 (901)
+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++...+...... |+.+++++|+
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR 243 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc
Confidence 5555554442221 1 34445555555555554322 112222333333445554443333222222 5555555555
Q ss_pred CCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcc
Q 041976 394 LQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443 (901)
Q Consensus 394 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 443 (901)
+. ..+..+..+..+..+++..|++... ..+.....+..+....+.+
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred cc-cccccccccccccccchhhcccccc---ccccccchHHHhccCcchh
Confidence 54 2223444555666666666665544 2233444444444444443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.1e-09 Score=122.36 Aligned_cols=241 Identities=27% Similarity=0.277 Sum_probs=139.4
Q ss_pred CCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEEC
Q 041976 193 LPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL 272 (901)
Q Consensus 193 l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 272 (901)
+..++.+.+..| .+.-.......+++|+.|++..|.++.+...+..+++|++|++++|.|+.. ..+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 344444455555 333222234556667777777777776654467777777777777777644 23556666777777
Q ss_pred CCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCccc
Q 041976 273 MHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351 (901)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 351 (901)
++|.++.. ..+..+++|+.+++++|.+....+. ...+.+++.+++.+|.+. ....+..+..+..+++..|.++..
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceec
Confidence 77777633 3455577777777777777654432 466677777777777765 333444455555556777766533
Q ss_pred CChhhcCCCC--CcEEEccCCccccc-cCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCcc---chh
Q 041976 352 IPSWLFSLPL--LEYVRLSDNQLSGH-IDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA---EPY 425 (901)
Q Consensus 352 ~~~~l~~l~~--L~~L~L~~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~ 425 (901)
-+ +..+.. |+.+++++|.+... .....+..+..+++.+|++... ..+.....+..+....+.+.... ...
T Consensus 224 ~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (414)
T KOG0531|consen 224 EG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEY 299 (414)
T ss_pred cC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccc
Confidence 22 222232 67777777777654 2233566777777777776533 23344455566666666554221 111
Q ss_pred hhhhcCCCcEEEccCCccc
Q 041976 426 MFAKLIKLKYLYLSHNSLS 444 (901)
Q Consensus 426 ~l~~l~~L~~L~L~~n~l~ 444 (901)
.....+.++.+.+..|.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cccccccccccccccCccc
Confidence 1334445555555555443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5e-09 Score=103.06 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=77.2
Q ss_pred CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCC--CCCCCCCcceeecCCCCCcc--CCccccC-CCCcC
Q 041976 170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFP--ANNWTSPIEYLDVSETSFSE--LPDSIGN-LKLLG 244 (901)
Q Consensus 170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~--~~~~~~~L~~L~Ls~~~l~~--lp~~l~~-l~~L~ 244 (901)
.+|+.|.+.++.+.+.+...+++-.+|+.|+|+.+..++...- .+..++.|..|+++.|.+.. +...+.. -.+|+
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 4555555555555555555555555555555555533332111 12345555555555555441 1111111 13566
Q ss_pred EEECCCCCCc---cCCCccccCCCCCCEEECCCCc-CCCCCCccccCCCCCCEEEccCCcCcccCCC----CCCCCCCCE
Q 041976 245 RLMLGYSQFV---GPVPASLGNLTQLTLLHLMHNN-FSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD----IFNLTQVSF 316 (901)
Q Consensus 245 ~L~L~~n~~~---~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~l~~L~~ 316 (901)
.|+++++.-. ..+..-..++++|.+|||++|. ++...-..|-+++.|++|.++.|.. .+|. +...+.|.+
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEE
Confidence 6666655311 1111223466777777777653 3332333456677777777777753 3333 456777888
Q ss_pred EECCCC
Q 041976 317 FDLSNN 322 (901)
Q Consensus 317 L~l~~n 322 (901)
|++.++
T Consensus 368 Ldv~g~ 373 (419)
T KOG2120|consen 368 LDVFGC 373 (419)
T ss_pred EEeccc
Confidence 877665
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=3.8e-08 Score=108.02 Aligned_cols=175 Identities=24% Similarity=0.212 Sum_probs=126.2
Q ss_pred CCCCcEEEccCCcccccccccccc-CCCCCEEECCCCcCc----------ccCCcchhcCCCCccEEECCCCcccccCCc
Q 041976 546 PSSLRVLLISNNQFTGEIIHSICD-IIALDVLDLSNNRLN----------GTIPECIGNFSPSLSVLDLRNNRLNGSIPG 614 (901)
Q Consensus 546 ~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~----------~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~ 614 (901)
+.+|+.|.+.++.+.. ...+.. -.+|++|.- .|.+. |.+...+ .+. .|...+.++|.+. ....
T Consensus 108 F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn-~L~~a~fsyN~L~-~mD~ 181 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWN-KLATASFSYNRLV-LMDE 181 (1096)
T ss_pred ccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhh-hHhhhhcchhhHH-hHHH
Confidence 6788888888888763 111111 123444422 22211 1111111 112 6788889999987 5667
Q ss_pred CccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCC
Q 041976 615 TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694 (901)
Q Consensus 615 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 694 (901)
++.-++.|+.|+|++|+++... .+..|+.|++|||++|.+....--...++. |+.|.+++|.++.. ....++.
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL----~gie~Lk 254 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL----RGIENLK 254 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh----hhHHhhh
Confidence 8888999999999999998654 789999999999999999765544444555 99999999987632 3347899
Q ss_pred CCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccc
Q 041976 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRY 733 (901)
Q Consensus 695 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~ 733 (901)
+|+.||+++|-+.+.---.++..+..|+.+.+.+|.+-.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999999999999887666777888999999999998744
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.6e-08 Score=110.86 Aligned_cols=129 Identities=28% Similarity=0.212 Sum_probs=94.6
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC-CCCCCCEEEc
Q 041976 311 LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYL 389 (901)
Q Consensus 311 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L 389 (901)
...|...+.+.|.+. .+..++.-++.|+.|+|++|+++... .+..++.|++|||++|.+....... .-..|+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeee
Confidence 345667777777776 55666777788888888888887443 6778888888888888876433222 1123888888
Q ss_pred cCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccc
Q 041976 390 SNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444 (901)
Q Consensus 390 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 444 (901)
++|.++.. ..+.++.+|+.||+++|-+.+......++.+..|+.|.|.+|++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88887643 467788888888888888877666566778888888888888765
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.3e-08 Score=100.17 Aligned_cols=153 Identities=24% Similarity=0.179 Sum_probs=88.0
Q ss_pred CCCEEEccCCcCcccCCC--CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCc-Cccc-CChhhcCCCCCcEE
Q 041976 290 QLTYLDLSSNSFFGEIPD--IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS-FSGT-IPSWLFSLPLLEYV 365 (901)
Q Consensus 290 ~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L 365 (901)
.|++|||++..++...-. +..+.+|+.|.+.++++.+.+...+++-.+|+.++++.+. ++.. ..-.+..++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466677766655532111 4566777777777777777777777777777777777654 3211 11245677888888
Q ss_pred EccCCccccccCCC----CCCCCCEEEccCccCC--C-CCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEc
Q 041976 366 RLSDNQLSGHIDEF----PSKSLQNIYLSNNRLQ--G-SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438 (901)
Q Consensus 366 ~L~~n~l~~~~~~~----~~~~L~~L~L~~n~l~--~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 438 (901)
++++|.+....-.. -.++|+.|+++++.-. . .+..-...+++|.+|||++|..-...-...|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888766543221 3456777777765421 0 111122356667777776654332222244555566666666
Q ss_pred cCCc
Q 041976 439 SHNS 442 (901)
Q Consensus 439 ~~n~ 442 (901)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5554
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=2e-07 Score=90.76 Aligned_cols=246 Identities=17% Similarity=0.112 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCCCCC----CCCCcccccCccCceEeCCCCCCCC--CcCC-------ccccCCCCCceeeCCCCcCCCCC
Q 041976 82 NVISLDLSCSWLHGN----IPTNTSLFHLLHLQTLNLSHNDFDY--SEIS-------SGFSRFRNLTHFSLSDSNINCKI 148 (901)
Q Consensus 82 ~v~~l~L~~~~~~g~----~~~~~~l~~l~~L~~L~Ls~n~~~~--~~~~-------~~l~~l~~L~~L~Ls~~~~~~~~ 148 (901)
.++.++|+||.+... +.. .+.+-++|++.++|.-.... ..++ ..+-+|++|+..+||+|.|....
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCN--VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHH--HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 467777777776432 222 34456666666666532111 0122 34556777777777777776666
Q ss_pred CcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCC
Q 041976 149 PYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSET 228 (901)
Q Consensus 149 p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~ 228 (901)
|..++.+ ++.- +.|.+|.+++|.+...--..+++ .|++ |..| .....-+.|++..+..|
T Consensus 109 ~e~L~d~---------is~~-t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrN 167 (388)
T COG5238 109 PEELGDL---------ISSS-TDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRN 167 (388)
T ss_pred chHHHHH---------HhcC-CCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccc
Confidence 6555443 1111 56666666666543111111110 0000 0000 00112344555555555
Q ss_pred CCccCCcc-----ccCCCCcCEEECCCCCCccCC-----CccccCCCCCCEEECCCCcCCCCCC----ccccCCCCCCEE
Q 041976 229 SFSELPDS-----IGNLKLLGRLMLGYSQFVGPV-----PASLGNLTQLTLLHLMHNNFSGHIP----SSLSNLVQLTYL 294 (901)
Q Consensus 229 ~l~~lp~~-----l~~l~~L~~L~L~~n~~~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L 294 (901)
++...|.. +..-..|+++.+..|.|...- -..+..+.+|+.||+..|.++..-. ..+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 55544321 222346666666666554210 0123455677777777776653321 223344557777
Q ss_pred EccCCcCcccCCC-----C--CCCCCCCEEECCCCCCCCCCCcc-------ccCCcCCcEEECcCCcCcc
Q 041976 295 DLSSNSFFGEIPD-----I--FNLTQVSFFDLSNNQLAGPIPSH-------GSRLQNLVLIRLNNNSFSG 350 (901)
Q Consensus 295 ~Ls~n~l~~~~~~-----~--~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~ 350 (901)
.+..|-++..-.. + ...++|..|...+|...+.+... -.+++-|..+.+.+|++..
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 7777755432111 1 13466677777777655432221 1356777777788888763
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=6.2e-07 Score=78.33 Aligned_cols=112 Identities=25% Similarity=0.359 Sum_probs=86.9
Q ss_pred cceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeC
Q 041976 759 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNL 838 (901)
Q Consensus 759 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 838 (901)
..|+.++|++|.+....+..-...+..+.|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|+.+..|.+|.+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 56888999999998655554455668999999999999 56777999999999999999998 56788888999999999
Q ss_pred CCCcCccCCCCCCCCCCcccccccCCcCCCCCCCCCCCCC
Q 041976 839 SHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGN 878 (901)
Q Consensus 839 s~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~l~~~c~~ 878 (901)
-+|.+. +||....+.+.++.--.|| +||...|..
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgn-----epl~~~~~~ 164 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGN-----EPLGDETKK 164 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcC-----CcccccCcc
Confidence 999887 6776544444443333344 566666643
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.5e-06 Score=85.90 Aligned_cols=213 Identities=25% Similarity=0.262 Sum_probs=131.4
Q ss_pred CCCCCCEEECCCCcCCCCCC-ccc-cCCCCCCEEEccCCcCccc--CCC-CCCCCCCCEEECCCCCCCCCCCccccCCcC
Q 041976 263 NLTQLTLLHLMHNNFSGHIP-SSL-SNLVQLTYLDLSSNSFFGE--IPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQN 337 (901)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~L~Ls~n~l~~~--~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 337 (901)
...-++.|.+.++.+...-. ..| ..++.++.+||.+|.++.- +.. +.++|.|++|+++.|.+...+...-....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 33445566666666543211 122 2467888999999988742 122 568889999999999887544332245678
Q ss_pred CcEEECcCCcCccc-CChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccC
Q 041976 338 LVLIRLNNNSFSGT-IPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSN 416 (901)
Q Consensus 338 L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 416 (901)
|++|-|.+..+.-. ....+..+|.+++|.++.|.+. .+.+..+.+...- +.+.++.+..|
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r------------q~n~Dd~c~e~~s-------~~v~tlh~~~c 183 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR------------QLNLDDNCIEDWS-------TEVLTLHQLPC 183 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh------------hhccccccccccc-------hhhhhhhcCCc
Confidence 88888888776422 2345667788888888887443 2333333322111 12223333333
Q ss_pred cCCCccch-hhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCC--hhhccCCCCCEEeCCCCcccc
Q 041976 417 NFSGIAEP-YMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP--RFLRTQDELSYLDLSENKIDG 493 (901)
Q Consensus 417 ~l~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp--~~l~~~~~L~~L~ls~n~l~~ 493 (901)
........ ..-.-++++..+.+..|++...........+|.+..|.+..+++.... +.+..++.|..|.++++.+.+
T Consensus 184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 21111000 112335777888888888777666666677888888888888887655 367888999999999998764
Q ss_pred c
Q 041976 494 Q 494 (901)
Q Consensus 494 ~ 494 (901)
.
T Consensus 264 ~ 264 (418)
T KOG2982|consen 264 P 264 (418)
T ss_pred c
Confidence 3
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=3.2e-06 Score=83.72 Aligned_cols=195 Identities=22% Similarity=0.283 Sum_probs=119.2
Q ss_pred CCcccEEeCCCCcCccC--ccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHh
Q 041976 643 CTKVEVLDIGNIKINDA--FPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNA 720 (901)
Q Consensus 643 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 720 (901)
++.++++|+.+|.|++. +...+.++|.|++|+|+.|++...|.... ....+|+.|-|.+..+.-.....++..++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 55666777777766542 22234577777777777777765555443 345677777777777766666666777777
Q ss_pred hhcccccCCccccc--Cccceec----eeEEeecch-------hHHHhhhccceeEEEcccccccccc-chhhhccCCCC
Q 041976 721 MRNVSADEGKLRYL--GEEYYQD----SVVVTLKGT-------EIEMQKILTVFTTIDFSSNGFDGEI-SQVIGKLHSLR 786 (901)
Q Consensus 721 L~~l~l~~~~~~~l--~~~~~~~----~~~~~~~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~ 786 (901)
++.++++.|.+..+ +.+.... ...+...+. .....++++++..+-+-.|.+...- -+.+..++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 77777777654332 2111111 111111121 1223466788888888888775432 23345567777
Q ss_pred eEeCCCCcCCCC-CCccccCCCCCCEEeCCCCccCCCCCc------CCcCCCCCCeeeCC
Q 041976 787 LLNLSHNHFTGQ-IPSSLGNLAKLESLDLSSNNVAGKIPK------PLTSLTSLSVLNLS 839 (901)
Q Consensus 787 ~L~Ls~N~l~~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~Ls 839 (901)
.|+|+.|+|..- .-+++..+++|..|.+++|.+....-. -++.|+++++|+=+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 888888888752 235677888888888888887643322 13567778877633
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=3.5e-07 Score=79.87 Aligned_cols=92 Identities=24% Similarity=0.333 Sum_probs=72.0
Q ss_pred ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976 758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN 837 (901)
Q Consensus 758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 837 (901)
++.+++++|++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..|.++-.||.-+|.+.. +|..+---+.....+
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIK 152 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHH
Confidence 456788889999998 67888999999999999999999 567777779999999999999874 444333334445566
Q ss_pred CCCCcCccCCCCCCC
Q 041976 838 LSHNRLDGPIPHGPQ 852 (901)
Q Consensus 838 Ls~N~l~g~iP~~~~ 852 (901)
+.++++.+.-|.++|
T Consensus 153 lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 153 LGNEPLGDETKKKLQ 167 (177)
T ss_pred hcCCcccccCccccc
Confidence 788899888776644
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.97 E-value=3.1e-07 Score=95.12 Aligned_cols=63 Identities=27% Similarity=0.336 Sum_probs=33.2
Q ss_pred cccccCceecccC-cCCCccchhhhhhcCCCcEEEccCCc-cccccccccCCCCCCccEEecCCc
Q 041976 404 ELVNLTDLQLDSN-NFSGIAEPYMFAKLIKLKYLYLSHNS-LSLGNTFKIDSPFPKFSYLSLSAC 466 (901)
Q Consensus 404 ~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~~ 466 (901)
.+++|++|++..| .++...-...-..+++|++++++++. +++..+.....++..++.+...+|
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 4666777777663 34433222334566777777777763 334333334444444555544444
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=1.1e-06 Score=85.83 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=20.8
Q ss_pred ccCCCCCCEEECCCCcCCCCCCcc----ccCCCCCCEEEccCCcC
Q 041976 261 LGNLTQLTLLHLMHNNFSGHIPSS----LSNLVQLTYLDLSSNSF 301 (901)
Q Consensus 261 l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l 301 (901)
+.+|++|+..+++.|.+....|.. ++.-+.|++|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 345556666666665555444432 23344555555555543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=1.9e-05 Score=56.09 Aligned_cols=36 Identities=44% Similarity=0.727 Sum_probs=15.9
Q ss_pred CCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccC
Q 041976 784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA 820 (901)
Q Consensus 784 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 820 (901)
+|++|++++|+|+. +|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34445555554442 2333444555555555555444
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00016 Score=77.67 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=14.1
Q ss_pred CCccEEECCCCcccccCCcCccCCCccCEEEccCC
Q 041976 596 PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNN 630 (901)
Q Consensus 596 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 630 (901)
++|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35555555555433 2222222 34555555544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00015 Score=77.72 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=58.6
Q ss_pred CCceeeccCccccCCCCC-CCCCCcEEEccCC-ccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECC
Q 041976 527 NLGYLDLRSNLLQGPLPV-PPSSLRVLLISNN-QFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLR 604 (901)
Q Consensus 527 ~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~ 604 (901)
+|+.|.+++|.-...+|. .+.+|++|++++| .+. .+| ..|+.|+++.+... .+..++++|+.|.+.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L~~n~~~-----~L~~LPssLk~L~I~ 140 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLP------ESVRSLEIKGSATD-----SIKNVPNGLTSLSIN 140 (426)
T ss_pred CCcEEEccCCCCcccCCchhhhhhhheEccCccccc-ccc------cccceEEeCCCCCc-----ccccCcchHhheecc
Confidence 344445544333333332 2456777777776 333 233 24666777655543 233455577777775
Q ss_pred CCc-ccc-cCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCC
Q 041976 605 NNR-LNG-SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNI 654 (901)
Q Consensus 605 ~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n 654 (901)
+++ ... .+|.. -.++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 141 ~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 141 SYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 433 110 11111 1257888888887765 2343333 47777777765
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00011 Score=69.35 Aligned_cols=84 Identities=27% Similarity=0.284 Sum_probs=41.8
Q ss_pred CCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccC
Q 041976 361 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440 (901)
Q Consensus 361 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 440 (901)
+...++|++|.+........++.|..|.+.+|+|+..-|.--.-+++|+.|.|.+|.+....+...+..+|+|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34555666665543333334455555555555555444433333445555555555555444333444445555555444
Q ss_pred Cccc
Q 041976 441 NSLS 444 (901)
Q Consensus 441 n~l~ 444 (901)
|+++
T Consensus 123 Npv~ 126 (233)
T KOG1644|consen 123 NPVE 126 (233)
T ss_pred Cchh
Confidence 4443
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=8.7e-05 Score=52.70 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=22.2
Q ss_pred CcceeecCCCCCccCCccccCCCCcCEEECCCCCCc
Q 041976 219 PIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFV 254 (901)
Q Consensus 219 ~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~ 254 (901)
+|++|++++|+++++|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 566666666666666665666666666666666655
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00019 Score=67.67 Aligned_cols=107 Identities=24% Similarity=0.273 Sum_probs=63.6
Q ss_pred CCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEE
Q 041976 382 KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461 (901)
Q Consensus 382 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 461 (901)
.....+|+++|.+... ..|..++.|..|.+..|+|+.+.+ ..-.-+++|+.|.+.+|.+.......-...+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3455666666666422 345566666677777777666654 3444456677777777666544433334456677777
Q ss_pred ecCCcCCCCCCh----hhccCCCCCEEeCCCCcc
Q 041976 462 SLSACNISAFPR----FLRTQDELSYLDLSENKI 491 (901)
Q Consensus 462 ~l~~~~l~~lp~----~l~~~~~L~~L~ls~n~l 491 (901)
.+-+|.++..+. .+..+|+|+.||..+-..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 776666654432 355667777777766543
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.31 E-value=1.3e-05 Score=83.47 Aligned_cols=88 Identities=18% Similarity=0.012 Sum_probs=39.6
Q ss_pred cccccCceecccCc-CCCccchhhhhhcCCCcEEEccCCcccc-ccccccCCCCCCccEEecCCcCC-CCCCh--hhccC
Q 041976 404 ELVNLTDLQLDSNN-FSGIAEPYMFAKLIKLKYLYLSHNSLSL-GNTFKIDSPFPKFSYLSLSACNI-SAFPR--FLRTQ 478 (901)
Q Consensus 404 ~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~l~~~~l-~~lp~--~l~~~ 478 (901)
.+++|++++++.+. +++..-.....++..++.+.+.+|.-.. ..........+.+.++++..|.. +...- .-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 46666666666653 3332222344555556666555542111 11111222344455555555532 22111 12335
Q ss_pred CCCCEEeCCCCcc
Q 041976 479 DELSYLDLSENKI 491 (901)
Q Consensus 479 ~~L~~L~ls~n~l 491 (901)
..|+.++.+++..
T Consensus 294 ~~lq~l~~s~~t~ 306 (483)
T KOG4341|consen 294 HALQVLCYSSCTD 306 (483)
T ss_pred hHhhhhcccCCCC
Confidence 5566666666644
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=8.2e-05 Score=86.95 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=40.6
Q ss_pred CccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCC-
Q 041976 106 LLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG- 184 (901)
Q Consensus 106 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~- 184 (901)
||+||+|.+++-.+....+-....++++|+.||+|+++++.- ..+++| ++|++|.+.+-.+..
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L--------------knLq~L~mrnLe~e~~ 210 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL--------------KNLQVLSMRNLEFESY 210 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc--------------ccHHHHhccCCCCCch
Confidence 555666666555554433333344555556666655555421 333444 555555555444432
Q ss_pred CCccccCCCCCCCEEeCCCC
Q 041976 185 NFPINIFHLPNPQMIRLSQN 204 (901)
Q Consensus 185 ~~p~~l~~l~~L~~L~L~~n 204 (901)
..-..+.+|++|++||+|..
T Consensus 211 ~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 211 QDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hhHHHHhcccCCCeeecccc
Confidence 22233445555555555544
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00017 Score=84.41 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=67.6
Q ss_pred cccCceecccCcCCCccchhh-hhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEE
Q 041976 406 VNLTDLQLDSNNFSGIAEPYM-FAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYL 484 (901)
Q Consensus 406 ~~L~~L~L~~n~l~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L 484 (901)
.+|++|++++...-....+.. -..+|+|+.|.+.+-.+...........||+|..||+++++++.+ ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 467777777654332222222 334688888888887776665556666788888888888888777 667778888887
Q ss_pred eCCCCcccccCChhhhhcCCCCccEEEcCCC
Q 041976 485 DLSENKIDGQIPSWISEIGKDSLSYVNLSHN 515 (901)
Q Consensus 485 ~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n 515 (901)
.+.+-.+.. ......-..++.|+.||+|..
T Consensus 201 ~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFES-YQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCc-hhhHHHHhcccCCCeeecccc
Confidence 777665542 111222244555555555543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00029 Score=69.53 Aligned_cols=82 Identities=26% Similarity=0.303 Sum_probs=39.3
Q ss_pred CCcceeecCCCCCccCCccccCCCCcCEEECCCC--CCccCCCccccCCCCCCEEECCCCcCCCCCCcc---ccCCCCCC
Q 041976 218 SPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS--QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS---LSNLVQLT 292 (901)
Q Consensus 218 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n--~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~ 292 (901)
..|+.|++.+..++.+ ..+..+++|++|.++.| .+.+.++.....+++|++|++++|++.. ++. +..+.+|.
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 3344444444444433 33445556666666666 4444444444445666666666665542 121 23344444
Q ss_pred EEEccCCcCc
Q 041976 293 YLDLSSNSFF 302 (901)
Q Consensus 293 ~L~Ls~n~l~ 302 (901)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555554443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.57 E-value=0.0083 Score=54.83 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=26.5
Q ss_pred CccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEcc
Q 041976 597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLR 676 (901)
Q Consensus 597 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 676 (901)
+|+.+.+..+ +..+....|.++.+++.+.+.+ .+.......|..+++|+.+++..+ +.......|.++ .|+.+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 4444444432 3333334444444444444433 222233334444444444444433 333333334443 44444443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0027 Score=62.90 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=32.5
Q ss_pred CCcccEEeCCCC--cCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcccc
Q 041976 643 CTKVEVLDIGNI--KINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG 708 (901)
Q Consensus 643 l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 708 (901)
+++|++|.++.| ++.+.++.....+|+|+++++++|++.. +....+...+.+|..||+.+|.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCccc
Confidence 344444444444 3333333333344555556666555542 2223333455666677777666554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.28 E-value=0.013 Score=53.60 Aligned_cols=121 Identities=16% Similarity=0.097 Sum_probs=45.6
Q ss_pred cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 041976 236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQV 314 (901)
Q Consensus 236 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L 314 (901)
.+.++++|+.+.+.. .+...-..+|.++++|+.+.+..+ +.......|..+++++.+.+.. .+...... +..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555555553 233333344555556666666553 4433334455665666666644 22222222 4446666
Q ss_pred CEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCC
Q 041976 315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLL 362 (901)
Q Consensus 315 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 362 (901)
+.+++..+ +.......+.++ +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666543 333334445555 666666554 3333334445554444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00044 Score=68.32 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=50.7
Q ss_pred CCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEc
Q 041976 359 LPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438 (901)
Q Consensus 359 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 438 (901)
+.+.+.|++-+|.+.+..-...++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|..+.....+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566666666665433333556666666666666533 235566666666666666666655555666666666666
Q ss_pred cCCcccc
Q 041976 439 SHNSLSL 445 (901)
Q Consensus 439 ~~n~l~~ 445 (901)
..|+..+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 6665443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.00053 Score=67.77 Aligned_cols=101 Identities=27% Similarity=0.267 Sum_probs=65.1
Q ss_pred CcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCC-CchhhhcccccCceec
Q 041976 335 LQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGS-IPSSIFELVNLTDLQL 413 (901)
Q Consensus 335 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 413 (901)
+.+.+.|+..++.++.+ .....++.|+.|.|+-|+++...+...|+.|++|+|..|.|... --..+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 44566777777777643 34556777788888888777776666777788888877777632 1123456777777777
Q ss_pred ccCcCCCccch----hhhhhcCCCcEEE
Q 041976 414 DSNNFSGIAEP----YMFAKLIKLKYLY 437 (901)
Q Consensus 414 ~~n~l~~~~~~----~~l~~l~~L~~L~ 437 (901)
..|.-.+.... ..+..+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77776655432 2344556666553
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.0077 Score=35.42 Aligned_cols=12 Identities=67% Similarity=0.861 Sum_probs=5.1
Q ss_pred CCEEeCCCCccC
Q 041976 809 LESLDLSSNNVA 820 (901)
Q Consensus 809 L~~L~Ls~N~l~ 820 (901)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.95 E-value=0.0081 Score=35.32 Aligned_cols=20 Identities=55% Similarity=0.788 Sum_probs=10.2
Q ss_pred CCeEeCCCCcCCCCCCccccC
Q 041976 785 LRLLNLSHNHFTGQIPSSLGN 805 (901)
Q Consensus 785 L~~L~Ls~N~l~~~~p~~l~~ 805 (901)
|++|||++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 44444443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.50 E-value=0.0065 Score=70.01 Aligned_cols=35 Identities=26% Similarity=0.130 Sum_probs=18.1
Q ss_pred CCCcCEEECCCCCCccC--CCccccCCCCCCEEECCC
Q 041976 240 LKLLGRLMLGYSQFVGP--VPASLGNLTQLTLLHLMH 274 (901)
Q Consensus 240 l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~L~~ 274 (901)
++.|+.|.+..+.-... +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 55666666665533222 223334556666666665
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.31 E-value=0.0091 Score=68.80 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCCCEEEccCcc-CCCCCchhhhc-ccccCceecccCc-CCCccchhhhhhcCCCcEEEccCC
Q 041976 382 KSLQNIYLSNNR-LQGSIPSSIFE-LVNLTDLQLDSNN-FSGIAEPYMFAKLIKLKYLYLSHN 441 (901)
Q Consensus 382 ~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n 441 (901)
++|+.++++.+. +++..-..++. +++|+.|.+..+. +++..-......++.|++|+++++
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 444444444444 33222222222 4455555544444 333222233334445555555544
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.23 E-value=0.13 Score=27.95 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=6.6
Q ss_pred CcceeecCCCCCccCC
Q 041976 219 PIEYLDVSETSFSELP 234 (901)
Q Consensus 219 ~L~~L~Ls~~~l~~lp 234 (901)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.10 E-value=0.0031 Score=70.66 Aligned_cols=36 Identities=42% Similarity=0.540 Sum_probs=18.3
Q ss_pred CCEEECCCCcCcccCCcch----hcCCCCccEEECCCCccc
Q 041976 573 LDVLDLSNNRLNGTIPECI----GNFSPSLSVLDLRNNRLN 609 (901)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~----~~~~~~L~~L~L~~n~l~ 609 (901)
+..|.+.+|.+.......+ ... +.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCc
Confidence 5666677777653322111 122 25555666666554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.48 E-value=0.28 Score=30.13 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=7.8
Q ss_pred CCCCEEeCCCCccCCC
Q 041976 807 AKLESLDLSSNNVAGK 822 (901)
Q Consensus 807 ~~L~~L~Ls~N~l~~~ 822 (901)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555433
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.48 E-value=0.28 Score=30.13 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=7.8
Q ss_pred CCCCEEeCCCCccCCC
Q 041976 807 AKLESLDLSSNNVAGK 822 (901)
Q Consensus 807 ~~L~~L~Ls~N~l~~~ 822 (901)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555433
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.40 E-value=0.36 Score=29.61 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=16.6
Q ss_pred cCCCCeEeCCCCcCCCCCCcccc
Q 041976 782 LHSLRLLNLSHNHFTGQIPSSLG 804 (901)
Q Consensus 782 l~~L~~L~Ls~N~l~~~~p~~l~ 804 (901)
+++|++|+|++|+|+.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888866555554
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.40 E-value=0.36 Score=29.61 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=16.6
Q ss_pred cCCCCeEeCCCCcCCCCCCcccc
Q 041976 782 LHSLRLLNLSHNHFTGQIPSSLG 804 (901)
Q Consensus 782 l~~L~~L~Ls~N~l~~~~p~~l~ 804 (901)
+++|++|+|++|+|+.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888866555554
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.30 E-value=0.3 Score=26.56 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=4.1
Q ss_pred ccEEecCCcCCCC
Q 041976 458 FSYLSLSACNISA 470 (901)
Q Consensus 458 L~~L~l~~~~l~~ 470 (901)
|+.|++++|+++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444444433
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.36 E-value=0.0045 Score=69.45 Aligned_cols=36 Identities=33% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCEEECCCCcCCCCCCc----cccCCCCCCEEEccCCcCc
Q 041976 267 LTLLHLMHNNFSGHIPS----SLSNLVQLTYLDLSSNSFF 302 (901)
Q Consensus 267 L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~ 302 (901)
+..|.+.+|.+...... .+.....|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 66677777776644222 3445566666666666655
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.60 E-value=0.033 Score=54.05 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=70.5
Q ss_pred ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976 758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN 837 (901)
Q Consensus 758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 837 (901)
....+.||++.|++.. .-..|+-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3556889999998863 3345667888899999999998 56888999999999999999887 6789999999999999
Q ss_pred CCCCcCc
Q 041976 838 LSHNRLD 844 (901)
Q Consensus 838 Ls~N~l~ 844 (901)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999975
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=0.075 Score=50.74 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=48.0
Q ss_pred CCCcEEEccCCccccccccccccCCCCCEEECCCCcCccc-CCcchhcCCCCccEEECCCC-cccccCCcCccCCCccCE
Q 041976 547 SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGT-IPECIGNFSPSLSVLDLRNN-RLNGSIPGTFAESNWLRS 624 (901)
Q Consensus 547 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 624 (901)
..++.++.++..|..+-...+.+++.++.|.+.+|.--+. --..+++..++|+.|+|++| +|+...-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3567788888888877777788888888888888763211 11122333456777777766 444322233334444444
Q ss_pred EEcc
Q 041976 625 LNLN 628 (901)
Q Consensus 625 L~Ls 628 (901)
|.+.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 4443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.04 E-value=0.034 Score=53.91 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=40.5
Q ss_pred cCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCE
Q 041976 190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTL 269 (901)
Q Consensus 190 l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 269 (901)
+........||++.| .+...-..++.++.+..||++.|.+..+|..++....++.+++..|... ..|.+++..++++.
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 344445555555555 3332222233444455555555555555555555555555554444433 34444444555555
Q ss_pred EECCCCc
Q 041976 270 LHLMHNN 276 (901)
Q Consensus 270 L~L~~n~ 276 (901)
+++.++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 5444444
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.00 E-value=0.6 Score=44.85 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=19.6
Q ss_pred ccCEEEccCCcccccCCccccCCCcccEEeCCCCc
Q 041976 621 WLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIK 655 (901)
Q Consensus 621 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~ 655 (901)
.++.+|-++..|..+.-+.+.++++++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 35566666666655555555555555555555553
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.54 E-value=2 Score=26.37 Aligned_cols=14 Identities=50% Similarity=0.752 Sum_probs=8.6
Q ss_pred CCCCEEeCCCCccC
Q 041976 807 AKLESLDLSSNNVA 820 (901)
Q Consensus 807 ~~L~~L~Ls~N~l~ 820 (901)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.18 E-value=1.3 Score=26.43 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=6.4
Q ss_pred ceeEEEccccccccc
Q 041976 760 VFTTIDFSSNGFDGE 774 (901)
Q Consensus 760 ~L~~L~Ls~N~l~~~ 774 (901)
+|++|+|++|+|++.
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 344555555555443
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.08 E-value=35 Score=37.55 Aligned_cols=237 Identities=17% Similarity=0.057 Sum_probs=109.3
Q ss_pred CCCCEEECCCCcCcccCCcchhcCC--CCccEEECCCCcccc---cCCcCccCCCccCEEEccCCcccc----cCC----
Q 041976 571 IALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNG---SIPGTFAESNWLRSLNLNNNELGG----AIP---- 637 (901)
Q Consensus 571 ~~L~~L~Ls~n~l~~~~p~~~~~~~--~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~----~~~---- 637 (901)
..+.+++++.|.....+|..+.... ..++.++.+...+.- ..+..++..+.++..+++.|.... ..+
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k 293 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEK 293 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccc
Confidence 3577788888887777775443221 245666666655431 123344555677777777776431 112
Q ss_pred ccccCCCcccEEeCCCCcCccCcccc-ccCC-----CCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCc
Q 041976 638 QSLVNCTKVEVLDIGNIKINDAFPYW-LGNL-----PELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLP 711 (901)
Q Consensus 638 ~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l-----~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 711 (901)
+.|..-.++ .|++..++.-..-+.. +-.+ +.=-++++..|+..+.-..... ..=..+++|++..|.+.|..-
T Consensus 294 ~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac-i~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 294 DTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC-IFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred cccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc-ccceeeeEeeccccccccccc
Confidence 234444555 5666555442221111 1000 1112345555555432221111 111347888888888776543
Q ss_pred HHH-HHhhHhhhcccccCCcccccCccceeceeEEeecchhH----HHhhhccceeEEEccccccccccch---hhhccC
Q 041976 712 ERF-LENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI----EMQKILTVFTTIDFSSNGFDGEISQ---VIGKLH 783 (901)
Q Consensus 712 ~~~-~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~ 783 (901)
... ...-++.+.+++....- ..+...+... ...+...-+..+.++.+.+....-. .+..-+
T Consensus 372 ~vgk~~~s~s~r~l~agrs~~-----------kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stq 440 (553)
T KOG4242|consen 372 AVGKRKQSKSGRILKAGRSGD-----------KQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQ 440 (553)
T ss_pred cccceeeccccccccccccCC-----------ceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCc
Confidence 211 01111222222211100 0000000000 0011123355666777766543322 233445
Q ss_pred CCCeEeCCCCcCCC----CCCccccCCCCCCEEeCCCCccC
Q 041976 784 SLRLLNLSHNHFTG----QIPSSLGNLAKLESLDLSSNNVA 820 (901)
Q Consensus 784 ~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~ 820 (901)
.++.|++++|.... .+|..+..-..++....+.|...
T Consensus 441 tl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 441 TLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 67777888776553 44555554455665555555543
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.45 E-value=6.1 Score=24.22 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=12.8
Q ss_pred CCcceeecCCCCCccCCc
Q 041976 218 SPIEYLDVSETSFSELPD 235 (901)
Q Consensus 218 ~~L~~L~Ls~~~l~~lp~ 235 (901)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777775
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.99 E-value=8.2 Score=24.14 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=7.6
Q ss_pred CCCEEeCCCCccC
Q 041976 808 KLESLDLSSNNVA 820 (901)
Q Consensus 808 ~L~~L~Ls~N~l~ 820 (901)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.10 E-value=55 Score=36.16 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=57.0
Q ss_pred CCcEEECcCCcCcccCChh--hcCCCCCcEEEccCCccc---cc--cC--CC----CCCCCCEEEccCccCCCCCch---
Q 041976 337 NLVLIRLNNNSFSGTIPSW--LFSLPLLEYVRLSDNQLS---GH--ID--EF----PSKSLQNIYLSNNRLQGSIPS--- 400 (901)
Q Consensus 337 ~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~---~~--~~--~~----~~~~L~~L~L~~n~l~~~~~~--- 400 (901)
.+++|.+..|...+..... +..-+..+.+++..-.-. +. .. .. ...-+..+.++.+.+....-.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 3677777777666544332 223445555655443220 00 00 00 223466777777776533222
Q ss_pred hhhcccccCceecccCcCCCccc---hhhhhhcCCCcEEEccCCcccc
Q 041976 401 SIFELVNLTDLQLDSNNFSGIAE---PYMFAKLIKLKYLYLSHNSLSL 445 (901)
Q Consensus 401 ~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~ 445 (901)
....-+.+.+|++++|....... +.....-..++.+..+.|....
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPED 482 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccc
Confidence 22345678888998887654322 2334444566766666665543
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.12 E-value=12 Score=22.84 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=9.5
Q ss_pred CCCCCEEeCCCCCCCC
Q 041976 193 LPNPQMIRLSQNPSLA 208 (901)
Q Consensus 193 l~~L~~L~L~~n~~l~ 208 (901)
+++|++|+|++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3566667776664443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.02 E-value=9 Score=42.83 Aligned_cols=62 Identities=27% Similarity=0.364 Sum_probs=36.4
Q ss_pred ccceeEEEccccccccc--cchhhhccCCCCeEeCCCC--cCCCCCCccccCC--CCCCEEeCCCCccCC
Q 041976 758 LTVFTTIDFSSNGFDGE--ISQVIGKLHSLRLLNLSHN--HFTGQIPSSLGNL--AKLESLDLSSNNVAG 821 (901)
Q Consensus 758 l~~L~~L~Ls~N~l~~~--~~~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~L--~~L~~L~Ls~N~l~~ 821 (901)
.+.+..+.|++|++... +...-..-+.|..|+|++| .+... .++..+ ..|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 46677788888877532 2222234567778888888 33321 222222 357777778887754
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.67 E-value=19 Score=40.44 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=15.2
Q ss_pred CCCccEEecCCcCCCCCC---hhhccCCCCCEEeCCCC
Q 041976 455 FPKFSYLSLSACNISAFP---RFLRTQDELSYLDLSEN 489 (901)
Q Consensus 455 ~~~L~~L~l~~~~l~~lp---~~l~~~~~L~~L~ls~n 489 (901)
+|.+..+.+++|++..+. ......|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344444444444433221 22233455555555555
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.15 E-value=23 Score=47.92 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=29.2
Q ss_pred eCCCCcCCCCCCccccCCCCCCEEeCCCCccCC
Q 041976 789 NLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821 (901)
Q Consensus 789 ~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~ 821 (901)
||++|+|+.+.+..|..+.+|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999998888889999999999999998875
No 96
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=27.53 E-value=86 Score=18.80 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHhhccCCCCCC
Q 041976 5 IRSYQFFSLQLLLLHSLSYAKHCP 28 (901)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (901)
.|.++.++|+.+++-+..++..|.
T Consensus 2 ~rKvQ~~FLc~~LL~cniSAg~cD 25 (26)
T TIGR03475 2 LRKVQYLFLCHLLLPCNISAGRCD 25 (26)
T ss_pred chhHHHHHHHHHHhhhcccccccC
Confidence 467888889888888877777774
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.09 E-value=42 Score=45.55 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.3
Q ss_pred EccccccccccchhhhccCCCCeEeCCCCcCCC
Q 041976 765 DFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTG 797 (901)
Q Consensus 765 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 797 (901)
||++|+|+...+..|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998888899999999999999998874
No 98
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=23.03 E-value=1.2e+02 Score=18.02 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHhhccCCCCC
Q 041976 5 IRSYQFFSLQLLLLHSLSYAKHC 27 (901)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (901)
.|.++.++|+.+++-+..++..|
T Consensus 2 lrK~Q~~FLc~lLL~CniSAg~~ 24 (25)
T PF08048_consen 2 LRKVQYLFLCHLLLPCNISAGRC 24 (25)
T ss_pred chhHHHHHHHHHHhhhhcccccC
Confidence 35678888888888777766666
No 99
>PRK14745 RepA leader peptide Tap; Provisional
Probab=21.02 E-value=1.4e+02 Score=17.82 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHhhccCCCCCC
Q 041976 5 IRSYQFFSLQLLLLHSLSYAKHCP 28 (901)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (901)
.|.+++.+|..+++-+..++..|.
T Consensus 2 lrk~qylfl~hlllpcnisagr~d 25 (26)
T PRK14745 2 LRKFQYLFLWHLLLPCIVSAGRSD 25 (26)
T ss_pred hHHHHHHHHHHHHhhccccccccC
Confidence 366788888888888887777664
Done!