Query 041976
Match_columns 901
No_of_seqs 853 out of 5172
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 21:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.9E-91 1.7E-95 843.9 48.3 739 22-887 4-758 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-69 4.1E-74 656.7 41.2 646 107-864 50-714 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-57 8.4E-62 544.7 52.7 600 110-849 7-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-56 3.7E-61 539.1 49.7 594 221-871 7-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.3E-52 8E-57 494.7 44.3 520 219-848 34-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.4E-51 4.7E-56 488.0 45.2 541 134-824 14-564 (606)
7 4eco_A Uncharacterized protein 100.0 1.8E-53 6.3E-58 503.0 21.7 521 27-610 27-601 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-51 1.1E-55 485.0 38.7 536 221-849 14-563 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 7.6E-50 2.6E-54 473.1 43.8 523 107-824 32-562 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 2E-50 6.9E-55 483.2 32.7 518 24-633 263-864 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-49 1.1E-53 483.0 41.3 545 221-871 7-564 (844)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-48 6.6E-53 476.1 38.5 524 105-716 22-569 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 2.4E-46 8.1E-51 440.1 37.4 516 221-850 10-537 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-46 2.4E-50 433.7 30.1 494 222-849 9-515 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 9.5E-45 3.3E-49 426.5 38.7 500 108-714 29-538 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-44 7.9E-49 420.9 33.9 488 68-637 3-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 5.2E-42 1.8E-46 409.0 42.1 513 218-845 52-581 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-43 4.5E-48 411.3 27.6 468 221-848 3-485 (520)
19 4eco_A Uncharacterized protein 100.0 1.8E-44 6.3E-49 426.1 18.3 362 346-845 193-601 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 7.8E-43 2.7E-47 404.8 27.6 457 110-715 3-489 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 9.2E-41 3.1E-45 398.2 41.3 524 107-717 52-590 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 8.1E-42 2.8E-46 408.9 24.7 361 251-660 435-843 (876)
23 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-41 1.1E-45 362.6 19.0 294 25-371 1-302 (313)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.7E-40 1.3E-44 385.4 28.3 470 217-848 30-514 (562)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-39 5.2E-44 380.2 31.3 463 192-715 29-518 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 4.1E-39 1.4E-43 363.4 23.7 429 103-667 7-439 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 6.2E-38 2.1E-42 353.8 29.4 300 81-444 11-310 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 1.3E-36 4.4E-41 346.4 33.9 381 221-711 13-412 (455)
29 3v47_A TOLL-like receptor 5B a 100.0 5.3E-36 1.8E-40 341.4 33.6 389 244-733 13-409 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 9.7E-36 3.3E-40 336.1 32.5 267 102-423 37-303 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-36 1.3E-40 339.4 22.9 361 236-717 37-397 (457)
32 1o6v_A Internalin A; bacterial 100.0 2.3E-33 7.8E-38 319.7 32.5 349 104-521 43-391 (466)
33 1o6v_A Internalin A; bacterial 100.0 3.4E-33 1.1E-37 318.3 33.8 146 193-349 45-190 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 3.2E-34 1.1E-38 328.4 24.7 347 459-871 14-360 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 2.2E-32 7.6E-37 304.3 28.2 351 58-449 2-357 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 1.5E-32 5.2E-37 314.5 25.1 319 509-871 15-337 (477)
37 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-33 6.5E-38 301.9 15.5 257 573-876 52-312 (313)
38 3oja_B Anopheles plasmodium-re 100.0 1.4E-31 4.7E-36 314.4 29.4 346 58-447 8-361 (597)
39 4fcg_A Uncharacterized protein 100.0 8.3E-33 2.8E-37 298.7 15.3 277 25-346 22-311 (328)
40 4fmz_A Internalin; leucine ric 100.0 1.4E-30 4.8E-35 285.1 29.5 306 103-443 40-345 (347)
41 4fmz_A Internalin; leucine ric 100.0 3.2E-30 1.1E-34 282.2 29.3 308 127-492 39-346 (347)
42 3oja_B Anopheles plasmodium-re 100.0 1.1E-30 3.8E-35 306.7 23.9 333 456-871 51-384 (597)
43 3o6n_A APL1; leucine-rich repe 100.0 7E-30 2.4E-34 284.1 26.4 289 217-521 44-334 (390)
44 1z7x_W Ribonuclease inhibitor; 100.0 6.8E-32 2.3E-36 308.0 -0.6 388 382-845 3-441 (461)
45 1xku_A Decorin; proteoglycan, 100.0 7E-28 2.4E-32 261.4 29.0 199 170-375 76-278 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 6.4E-28 2.2E-32 261.9 28.2 283 108-416 34-330 (332)
47 1xku_A Decorin; proteoglycan, 100.0 3.1E-28 1.1E-32 264.2 25.5 265 529-844 34-306 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 2E-28 7E-33 265.8 23.8 285 506-842 34-331 (332)
49 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-31 1.6E-35 301.1 -2.5 367 406-846 3-413 (461)
50 2z80_A TOLL-like receptor 2, v 99.9 1.8E-27 6.2E-32 260.7 18.1 273 532-848 37-318 (353)
51 3zyi_A Leucine-rich repeat-con 99.9 5.2E-26 1.8E-30 257.9 25.8 230 546-844 74-303 (452)
52 2z66_A Variable lymphocyte rec 99.9 2.7E-26 9.4E-31 246.0 21.7 247 531-846 12-263 (306)
53 3zyj_A Leucine-rich repeat-con 99.9 7.8E-26 2.7E-30 255.5 25.0 229 546-844 63-292 (440)
54 2z80_A TOLL-like receptor 2, v 99.9 2.9E-27 9.9E-32 259.1 12.9 285 61-397 22-316 (353)
55 4fcg_A Uncharacterized protein 99.9 2.3E-26 7.9E-31 248.2 19.6 277 58-373 31-314 (328)
56 1wwl_A Monocyte differentiatio 99.9 4.4E-28 1.5E-32 260.3 6.0 246 549-845 45-310 (312)
57 3ogk_B Coronatine-insensitive 99.9 3.3E-29 1.1E-33 295.5 -3.5 431 68-521 41-529 (592)
58 2z66_A Variable lymphocyte rec 99.9 3.3E-26 1.1E-30 245.5 17.6 250 69-374 7-262 (306)
59 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-26 1.5E-30 241.6 17.1 236 546-850 31-267 (285)
60 3ogk_B Coronatine-insensitive 99.9 3.2E-28 1.1E-32 287.0 0.4 240 124-368 65-326 (592)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-25 6.1E-30 237.0 20.8 212 170-403 56-269 (285)
62 3zyi_A Leucine-rich repeat-con 99.9 2.5E-25 8.5E-30 252.3 22.5 251 573-871 56-307 (452)
63 3zyj_A Leucine-rich repeat-con 99.9 3.2E-25 1.1E-29 250.4 22.8 251 573-871 45-296 (440)
64 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-25 1.1E-29 257.1 23.1 291 58-430 11-307 (622)
65 1wwl_A Monocyte differentiatio 99.9 1.9E-27 6.5E-32 255.4 2.4 244 105-374 41-310 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-24 1.3E-28 248.1 27.9 262 480-849 41-302 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-27 2E-31 252.2 2.9 246 547-849 34-281 (317)
68 2z62_A TOLL-like receptor 4, v 99.9 1.6E-23 5.5E-28 220.7 21.8 227 576-850 12-243 (276)
69 2o6q_A Variable lymphocyte rec 99.9 5.9E-23 2E-27 215.4 23.5 214 66-323 2-216 (270)
70 3oja_A Leucine-rich immune mol 99.9 5E-25 1.7E-29 250.8 7.8 236 547-839 34-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 7.1E-25 2.4E-29 249.6 9.0 223 569-848 32-255 (487)
72 3o53_A Protein LRIM1, AGAP0063 99.9 4.7E-25 1.6E-29 237.2 6.8 257 109-415 12-271 (317)
73 2p1m_B Transport inhibitor res 99.9 1.1E-25 3.7E-30 265.6 -0.2 407 380-844 103-544 (594)
74 2p1m_B Transport inhibitor res 99.9 4E-26 1.4E-30 269.3 -6.1 112 567-679 428-542 (594)
75 2o6q_A Variable lymphocyte rec 99.9 6.2E-22 2.1E-26 207.6 23.8 205 572-847 17-221 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 3.9E-22 1.3E-26 210.1 21.5 209 573-823 30-240 (276)
77 4glp_A Monocyte differentiatio 99.9 1.3E-22 4.3E-27 217.6 16.8 230 572-845 65-308 (310)
78 3rfs_A Internalin B, repeat mo 99.9 4.2E-22 1.4E-26 209.1 14.8 207 193-407 40-247 (272)
79 1p9a_G Platelet glycoprotein I 99.9 5.4E-21 1.9E-25 202.1 23.2 176 170-348 31-207 (290)
80 3goz_A Leucine-rich repeat-con 99.9 3.3E-23 1.1E-27 227.3 6.3 259 552-846 3-299 (362)
81 3rfs_A Internalin B, repeat mo 99.9 1.7E-21 5.8E-26 204.4 18.7 209 103-360 37-246 (272)
82 2ast_B S-phase kinase-associat 99.9 1.5E-23 5.2E-28 228.0 -0.8 210 67-299 35-257 (336)
83 3m19_A Variable lymphocyte rec 99.9 4.9E-21 1.7E-25 198.4 18.1 89 760-848 108-196 (251)
84 1p9a_G Platelet glycoprotein I 99.9 4E-20 1.4E-24 195.4 23.0 204 102-326 5-209 (290)
85 2ast_B S-phase kinase-associat 99.8 4.2E-22 1.4E-26 216.6 5.7 251 548-850 48-312 (336)
86 2xwt_C Thyrotropin receptor; s 99.8 5.6E-21 1.9E-25 196.5 13.6 197 596-841 31-236 (239)
87 3goz_A Leucine-rich repeat-con 99.8 2.8E-22 9.5E-27 219.9 3.9 259 532-826 4-303 (362)
88 2ca6_A RAN GTPase-activating p 99.8 7.3E-23 2.5E-27 227.0 -1.4 249 563-848 24-320 (386)
89 4glp_A Monocyte differentiatio 99.8 1E-20 3.5E-25 202.7 14.5 223 108-350 65-308 (310)
90 2xwt_C Thyrotropin receptor; s 99.8 5.4E-20 1.8E-24 189.1 16.6 200 546-818 30-237 (239)
91 2ca6_A RAN GTPase-activating p 99.8 3.2E-22 1.1E-26 221.9 -1.2 139 235-373 116-287 (386)
92 3m19_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 184.4 21.7 178 529-709 17-194 (251)
93 1h6u_A Internalin H; cell adhe 99.8 8.1E-20 2.8E-24 195.1 16.7 107 261-374 125-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2.1E-19 7.3E-24 191.9 17.5 173 237-445 59-231 (308)
95 3cvr_A Invasion plasmid antige 99.8 8.4E-20 2.9E-24 209.0 14.6 210 58-336 32-254 (571)
96 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.9E-23 190.1 19.9 239 531-841 14-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.5E-23 190.5 15.6 237 574-859 12-251 (350)
98 2o6s_A Variable lymphocyte rec 99.8 1.5E-18 5.2E-23 174.0 14.3 174 530-713 11-184 (208)
99 2o6s_A Variable lymphocyte rec 99.8 4.3E-18 1.5E-22 170.7 17.5 180 221-407 10-190 (208)
100 3cvr_A Invasion plasmid antige 99.8 2.7E-18 9.1E-23 196.6 16.7 188 108-360 60-254 (571)
101 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.3E-22 193.4 13.6 172 103-325 39-210 (605)
102 1h6t_A Internalin B; cell adhe 99.7 3.9E-17 1.3E-21 172.6 16.3 174 102-326 41-214 (291)
103 2v70_A SLIT-2, SLIT homolog 2 99.7 4.8E-17 1.6E-21 164.2 16.2 141 573-716 34-175 (220)
104 2v9t_B SLIT homolog 2 protein 99.7 6.3E-17 2.2E-21 163.3 16.6 140 572-714 33-172 (220)
105 2xot_A Amphoterin-induced prot 99.7 2.2E-17 7.7E-22 180.5 13.8 177 574-821 21-203 (361)
106 2v9t_B SLIT homolog 2 protein 99.7 8.8E-17 3E-21 162.2 17.0 151 221-373 14-165 (220)
107 1h6t_A Internalin B; cell adhe 99.7 4.6E-17 1.6E-21 172.1 15.1 170 191-372 43-212 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 1.7E-16 5.8E-21 160.2 17.6 155 528-683 13-168 (220)
109 1m9s_A Internalin B; cell inva 99.7 9.9E-17 3.4E-21 185.8 17.1 169 81-303 43-211 (605)
110 1dce_A Protein (RAB geranylger 99.7 8.2E-19 2.8E-23 202.1 -1.9 215 104-342 346-566 (567)
111 4b8c_D Glucose-repressible alc 99.7 2E-18 6.9E-23 205.4 1.4 220 27-306 129-358 (727)
112 3e6j_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 157.9 18.4 151 220-373 21-172 (229)
113 3e6j_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 158.6 17.4 154 530-711 23-176 (229)
114 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.8E-21 175.0 12.9 177 531-710 23-205 (361)
115 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.5E-21 165.7 11.2 168 105-301 17-184 (263)
116 1dce_A Protein (RAB geranylger 99.7 3.7E-19 1.3E-23 205.0 -9.1 205 128-367 345-567 (567)
117 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.2E-21 157.2 10.6 111 236-348 83-193 (197)
118 4ezg_A Putative uncharacterize 99.6 3.7E-16 1.3E-20 154.9 11.5 150 217-373 43-194 (197)
119 1w8a_A SLIT protein; signaling 99.6 1.8E-16 6.3E-21 156.2 8.6 114 758-871 53-166 (192)
120 1xeu_A Internalin C; cellular 99.6 1.1E-15 3.8E-20 158.7 12.9 166 219-395 20-185 (263)
121 3sb4_A Hypothetical leucine ri 99.6 1.6E-15 5.6E-20 163.5 10.5 267 548-845 26-311 (329)
122 1w8a_A SLIT protein; signaling 99.6 1.4E-14 4.9E-19 142.6 15.1 136 574-715 11-147 (192)
123 4b8c_D Glucose-repressible alc 99.6 5.5E-16 1.9E-20 184.5 4.6 120 234-356 217-336 (727)
124 2wfh_A SLIT homolog 2 protein 99.5 1.3E-13 4.4E-18 135.7 15.3 137 574-717 13-149 (193)
125 2ell_A Acidic leucine-rich nuc 99.5 2.3E-14 7.8E-19 138.0 9.6 132 547-681 24-160 (168)
126 2ell_A Acidic leucine-rich nuc 99.5 2.5E-14 8.5E-19 137.7 9.7 127 220-348 26-159 (168)
127 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.2E-18 135.8 14.3 128 550-682 13-140 (193)
128 2je0_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 134.0 8.7 126 170-297 17-148 (149)
129 3sb4_A Hypothetical leucine ri 99.5 1.1E-13 3.8E-18 149.1 13.5 100 597-700 227-327 (329)
130 2je0_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 133.3 8.0 125 242-368 18-148 (149)
131 2o6r_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 130.5 15.3 130 220-351 9-139 (177)
132 2o6r_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 130.4 14.4 113 571-684 28-140 (177)
133 4fdw_A Leucine rich hypothetic 99.4 7.7E-13 2.6E-17 145.5 16.0 239 549-844 115-358 (401)
134 3g39_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 129.1 9.9 91 758-848 29-119 (170)
135 4fdw_A Leucine rich hypothetic 99.4 1.6E-11 5.6E-16 134.9 21.9 91 611-706 291-382 (401)
136 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 126.3 10.0 90 758-847 32-121 (174)
137 1ds9_A Outer arm dynein; leuci 99.4 7.6E-15 2.6E-19 145.5 -5.8 84 758-845 92-186 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.4 6.4E-13 2.2E-17 128.8 7.2 129 239-373 17-153 (176)
139 4fs7_A Uncharacterized protein 99.3 6.6E-11 2.2E-15 130.8 22.7 329 257-673 63-393 (394)
140 1a9n_A U2A', U2A'; complex (nu 99.3 1.8E-12 6.2E-17 125.6 9.0 137 566-707 14-153 (176)
141 3g39_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 120.7 12.4 105 573-681 11-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.3 4.1E-15 1.4E-19 147.5 -11.4 127 127-295 43-180 (198)
143 2r9u_A Variable lymphocyte rec 99.3 1.3E-11 4.6E-16 118.8 12.4 104 574-681 15-118 (174)
144 4fs7_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 125.0 22.4 196 236-440 157-352 (394)
145 3un9_A NLR family member X1; l 99.1 1.8E-12 6.1E-17 141.2 -3.4 166 620-822 72-254 (372)
146 2ifg_A High affinity nerve gro 99.1 1.5E-10 5E-15 125.8 8.6 87 758-845 30-117 (347)
147 4gt6_A Cell surface protein; l 99.1 1E-08 3.6E-13 113.1 23.1 138 559-706 253-390 (394)
148 3un9_A NLR family member X1; l 99.1 5.7E-12 1.9E-16 137.2 -3.4 61 620-680 155-223 (372)
149 4gt6_A Cell surface protein; l 99.0 2E-08 7E-13 110.7 24.4 110 564-680 281-390 (394)
150 2ifg_A High affinity nerve gro 99.0 1.4E-09 4.8E-14 118.0 13.4 102 576-681 13-116 (347)
151 2ra8_A Uncharacterized protein 98.7 7.2E-09 2.5E-13 111.6 5.7 40 758-797 278-321 (362)
152 4h09_A Hypothetical leucine ri 98.7 1.8E-06 6E-11 94.6 23.4 37 261-298 42-78 (379)
153 2ra8_A Uncharacterized protein 98.6 2.6E-08 8.8E-13 107.3 4.9 142 352-494 164-322 (362)
154 4h09_A Hypothetical leucine ri 98.5 5.3E-06 1.8E-10 90.8 21.4 108 565-676 234-341 (379)
155 3rw6_A Nuclear RNA export fact 98.3 3.6E-07 1.2E-11 93.0 3.8 67 780-848 167-237 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 2.7E-07 9.2E-12 89.5 2.7 86 759-844 65-164 (185)
157 3rw6_A Nuclear RNA export fact 98.2 7.4E-07 2.5E-11 90.6 5.6 79 757-837 168-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.1 4E-07 1.4E-11 88.2 0.2 93 564-657 29-136 (185)
159 3e4g_A ATP synthase subunit S, 97.9 1.7E-06 5.7E-11 81.4 -0.4 91 108-209 62-154 (176)
160 3e4g_A ATP synthase subunit S, 97.8 5.1E-06 1.7E-10 78.1 1.5 83 597-679 62-150 (176)
161 3rfe_A Platelet glycoprotein I 97.0 0.001 3.5E-08 59.6 6.9 56 787-844 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00056 1.9E-08 65.5 2.7 85 759-843 70-169 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0033 1.1E-07 56.1 5.7 58 762-821 11-69 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.3 0.001 3.6E-08 63.6 1.8 84 597-680 71-169 (197)
165 2lz0_A Uncharacterized protein 56.3 20 0.0007 29.5 5.8 46 607-653 7-52 (100)
166 2lz0_A Uncharacterized protein 45.2 20 0.00069 29.5 4.0 49 629-678 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-91 Score=843.86 Aligned_cols=739 Identities=30% Similarity=0.434 Sum_probs=553.4
Q ss_pred cCCCCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCcCccceeecCCCCeEEEEEcCCCCCCCC---CC
Q 041976 22 SYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGN---IP 98 (901)
Q Consensus 22 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~---~~ 98 (901)
.++..+.++||+|||+||+++.++. .+++|..+++||.|+||+|+ +|+|++|+|++..+.|. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-----------~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~ 70 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-----------LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVS 70 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-----------SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHH
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-----------cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccC
Confidence 3445567899999999999997432 58999988899999999998 69999999999999998 87
Q ss_pred CCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCc--ccccccccccchhhcccCCCCccEEE
Q 041976 99 TNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPY--EISFLKMSTVVLDSLKNLSSSLTSLS 176 (901)
Q Consensus 99 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~--~l~~l~~~~~~~~~~~~l~~~L~~L~ 176 (901)
+ ++.++++|+.++++.+.+.. +|+.++++++|++|+|++|.+.|.+|. .++++ ++|++|+
T Consensus 71 ~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l--------------~~L~~L~ 132 (768)
T 3rgz_A 71 S--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC--------------SGLKFLN 132 (768)
T ss_dssp H--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC--------------TTCCEEE
T ss_pred h--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCC--------------CCCCEEE
Confidence 7 89999999999999998744 678899999999999999999999998 89999 9999999
Q ss_pred cCCCcCCCCCcccc-CCCCCCCEEeCCCCCCCCccCCC----CCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCC
Q 041976 177 LSDCILQGNFPINI-FHLPNPQMIRLSQNPSLAGKFPA----NNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS 251 (901)
Q Consensus 177 Ls~~~~~~~~p~~l-~~l~~L~~L~L~~n~~l~~~~~~----~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n 251 (901)
+++|.+.+..|..+ .++++|++|++++| .+++..|. +..+++|++|++++|.+..... +..+++|++|++++|
T Consensus 133 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 210 (768)
T 3rgz_A 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSN 210 (768)
T ss_dssp CCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSS
T ss_pred CcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCC
Confidence 99999999888876 89999999999999 88887764 5778899999999998886533 378889999999999
Q ss_pred CCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCcc
Q 041976 252 QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSH 331 (901)
Q Consensus 252 ~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 331 (901)
.+.+.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..
T Consensus 211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCC
T ss_pred cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHH
Confidence 99887776 888999999999999998888888999999999999999888877766 7888999999999888888888
Q ss_pred ccCC-cCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC---CCCCCCEEEccCccCCCCCchhhhccc-
Q 041976 332 GSRL-QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGSIPSSIFELV- 406 (901)
Q Consensus 332 ~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~- 406 (901)
+... ++|++|++++|.+++.+|..++.+++|++|++++|.+.+.++.. .+++|++|++++|.+++.+|..+..++
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence 8765 88999999999888888888888888888888888777555431 445555555555555555555555554
Q ss_pred ccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCC-CCChhhccCCCCCEEe
Q 041976 407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNIS-AFPRFLRTQDELSYLD 485 (901)
Q Consensus 407 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~~~~L~~L~ 485 (901)
+|++|++++|.+++..++ .+.. ..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~-~~~~-----------------------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILP-NLCQ-----------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp TCSEEECCSSEEEEECCT-TTTC-----------------------STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcCh-hhhh-----------------------cccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 555555555555443331 1111 11344455555555444 4566677777777777
Q ss_pred CCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcccccccc
Q 041976 486 LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIH 565 (901)
Q Consensus 486 ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 565 (901)
+++|++.+.+|..+ ..+ ++|++|++++|.+++.+|.
T Consensus 425 Ls~N~l~~~~p~~l--~~l------------------------------------------~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 425 LSFNYLSGTIPSSL--GSL------------------------------------------SKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp CCSSEEESCCCGGG--GGC------------------------------------------TTCCEEECCSSCCCSCCCG
T ss_pred CcCCcccCcccHHH--hcC------------------------------------------CCCCEEECCCCcccCcCCH
Confidence 77777777777665 222 3455555566666666777
Q ss_pred ccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCc
Q 041976 566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTK 645 (901)
Q Consensus 566 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 645 (901)
.+..+++|++|++++|.+++.+|..+..+. +|++|++++|++++.+|..|+.+++|++|++++|++++.+|..+..+++
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 777777777777777777777777777765 7777777777777777777777777777777777777777777777777
Q ss_pred ccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhccc
Q 041976 646 VEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVS 725 (901)
Q Consensus 646 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~ 725 (901)
|++|++++|++++.+|.++.....+..+.+..+.-...+.... ...........+ .+.+..+.. +..+..+..++
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~~~~~ 614 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG-MKKECHGAGNLL---EFQGIRSEQ-LNRLSTRNPCN 614 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS-CCTTCCSSEEEE---ECTTCCGGG-GGGGGGTCCSC
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc-cccccccccccc---ccccccchh-hhccccccccc
Confidence 7777777777777777777666555444333211000000000 000000000000 122333322 12233333333
Q ss_pred ccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccC
Q 041976 726 ADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGN 805 (901)
Q Consensus 726 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 805 (901)
+..+.+..... .....++.|+.|||++|+++|.+|..++++++|++|+|++|+++|.+|..|++
T Consensus 615 l~~~~~~g~~~----------------~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 615 ITSRVYGGHTS----------------PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp TTSCEEEEECC----------------CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccceecccCc----------------hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 33322211100 01122678999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccccccCCcCCCCCCCCCCCCCCCCCCCC
Q 041976 806 LAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTF 885 (901)
Q Consensus 806 L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~l~~~c~~~~~~~~~ 885 (901)
+++|++|||++|+++|.+|+.+..+++|++|||++|+++|.||.++||.+|...+|.||+++||.|+. .|.... +.+|
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~-~~~~ 756 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN-ADGY 756 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-----
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc-cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 886544 4667
Q ss_pred CC
Q 041976 886 HE 887 (901)
Q Consensus 886 ~~ 887 (901)
+.
T Consensus 757 ~~ 758 (768)
T 3rgz_A 757 AH 758 (768)
T ss_dssp --
T ss_pred CC
Confidence 63
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-69 Score=656.70 Aligned_cols=646 Identities=30% Similarity=0.432 Sum_probs=503.3
Q ss_pred ccCceEeCCCCCCCCC--cCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCC
Q 041976 107 LHLQTLNLSHNDFDYS--EISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG 184 (901)
Q Consensus 107 ~~L~~L~Ls~n~~~~~--~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~ 184 (901)
.+++.|+|+++.+.+. .+|+.+.++++|+.++++.+.+. .+|..++.+ ++|++|+|++|.+.|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l--------------~~L~~L~Ls~n~l~~ 114 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCS--------------ASLTSLDLSRNSLSG 114 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCC--------------TTCCEEECCSSEEEE
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccC--------------CCCCEEECCCCcCCC
Confidence 4788999999988763 26778888999999999888764 467888888 899999999999988
Q ss_pred CCcc--ccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccc-cCCCCcCEEECCCCCCccCCCcc-
Q 041976 185 NFPI--NIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSI-GNLKLLGRLMLGYSQFVGPVPAS- 260 (901)
Q Consensus 185 ~~p~--~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~- 260 (901)
.+|. .++++++|++|++++| .+.+.+| ..+ .++++|++|++++|.+.+..|..
T Consensus 115 ~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 115 PVTTLTSLGSCSGLKFLNVSSN-TLDFPGK----------------------VSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp EGGGGGGGGGCTTCCEEECCSS-EEECCSS----------------------CCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred cCCChHHHhCCCCCCEEECcCC-ccCCcCC----------------------HHHhccCCCCCEEECCCCccCCcCChhh
Confidence 8888 8888999999999888 6666655 333 77888999999999888877766
Q ss_pred --ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCC
Q 041976 261 --LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL 338 (901)
Q Consensus 261 --l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 338 (901)
+.++++|++|++++|.+++..|. ..+++|++|++++|.+.+.+|.+.++++|++|++++|.+++.+|..++.+++|
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 78888888999888888876653 77888888888888888877778888888888888888888888888888888
Q ss_pred cEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC--C-CCCCCEEEccCccCCCCCchhhhcccccCceeccc
Q 041976 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--P-SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDS 415 (901)
Q Consensus 339 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 415 (901)
++|++++|.+++.+|.. .+++|++|++++|.+++.+|.. . +++|++|++++|.+++.+|..++.+++|++|++++
T Consensus 250 ~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp CEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 88888888888777654 7778888888888887666654 2 37777888877777777777777777777777777
Q ss_pred CcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCC-CCCEEeCCCCccccc
Q 041976 416 NNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQD-ELSYLDLSENKIDGQ 494 (901)
Q Consensus 416 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~-~L~~L~ls~n~l~~~ 494 (901)
|.+.+..+...+..+++|++|++++|.+++ .+|..+..++ +|++|++++|++.+.
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~------------------------~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSG------------------------ELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEE------------------------CCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCc------------------------cccHHHHhhhcCCcEEEccCCCcCCC
Confidence 777766555556666666666666665543 2345555555 777777777777776
Q ss_pred CChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCC
Q 041976 495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALD 574 (901)
Q Consensus 495 ~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 574 (901)
+|..+... .+++|++|++++|.+++.+|..+.++++|+
T Consensus 384 ~~~~~~~~------------------------------------------~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 384 ILPNLCQN------------------------------------------PKNTLQELYLQNNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp CCTTTTCS------------------------------------------TTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred cChhhhhc------------------------------------------ccCCccEEECCCCccccccCHHHhcCCCCC
Confidence 66554211 124577777788888888888888899999
Q ss_pred EEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCC
Q 041976 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNI 654 (901)
Q Consensus 575 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n 654 (901)
+|++++|.+++.+|..+..+. +|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 999999999888888888886 8999999999999888888989999999999999999888989999999999999999
Q ss_pred cCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhccccc-CCcccc
Q 041976 655 KINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD-EGKLRY 733 (901)
Q Consensus 655 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~-~~~~~~ 733 (901)
++++.+|.+++.+++|++|++++|++.+.+|... ..+++|+.|++++|+++|.+|..++... .+..+... ++.+.+
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVY 577 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTT-TCBCCSTTCSCEEEE
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhccc-chhhhhccccccccc
Confidence 9998999999999999999999999988877654 6788999999999999999997764322 22222221 111111
Q ss_pred cCccc-----eeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCC
Q 041976 734 LGEEY-----YQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK 808 (901)
Q Consensus 734 l~~~~-----~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~ 808 (901)
+.... ..........+........+..+..++++.|.++|.+|..++.+++|++|||++|+++|.+|..|+++++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 11100 0000111122222222233556677889999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC-CCCCCcccccccCC
Q 041976 809 LESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG-PQFNTFQEDSYIGN 864 (901)
Q Consensus 809 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~~n 864 (901)
|+.|+|++|+++|.+|+.++++++|++|||++|+++|.||.. ..+..+......+|
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999999999999975 23444444444444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-57 Score=544.70 Aligned_cols=600 Identities=22% Similarity=0.260 Sum_probs=401.5
Q ss_pred ceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccc
Q 041976 110 QTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPIN 189 (901)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~ 189 (901)
+.+|.+++.++. +|..+. +++++|+|++|.+.+..|..++++ ++|++|++++|.+++..|..
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~~~ 68 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRY--------------SQLTSLDVGFNTISKLEPEL 68 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGG--------------TTCSEEECCSSCCCCCCTTH
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCC--------------CcCcEEECCCCccCccCHHH
Confidence 467777777765 666554 677777777777765555556666 77777777777777666666
Q ss_pred cCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCccCCCccccCCCCCC
Q 041976 190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLT 268 (901)
Q Consensus 190 l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 268 (901)
++++++|++|++++| .+ +.+|. .++++++|++|++++|.+.+..|..++++++|+
T Consensus 69 ~~~l~~L~~L~L~~n-~l-----------------------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHN-EL-----------------------SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp HHHCTTCCEEECCSS-CC-----------------------CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhcccCcCEEECCCC-cc-----------------------CccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 666666666666666 33 33434 588888999999999988877777888899999
Q ss_pred EEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC---CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcC
Q 041976 269 LLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD---IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345 (901)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 345 (901)
+|++++|.+++..|..++++++|++|++++|.+++..+. ...+++|++|++++|.+++..|..+..+++|+.+++.+
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 999999988888888888888999999998888876654 23567888888888888888888888888888888888
Q ss_pred CcCcccCChhhc---CCCCCcEEEccCCccccccCCC--CC--CCCCEEEccCccCCCCCchhhhcccccCceecccCcC
Q 041976 346 NSFSGTIPSWLF---SLPLLEYVRLSDNQLSGHIDEF--PS--KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNF 418 (901)
Q Consensus 346 n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~--~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 418 (901)
+.+.+.....+. ..++|++|++++|.+.+..+.. .+ ++|+.|++++|.+++..|..|+.+++|++|++++|.+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 876543222211 3467777777777776655443 22 3477777777777766666677777777777777777
Q ss_pred CCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCCh----hhccCCCCCEEeCCCCccccc
Q 041976 419 SGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPR----FLRTQDELSYLDLSENKIDGQ 494 (901)
Q Consensus 419 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~----~l~~~~~L~~L~ls~n~l~~~ 494 (901)
.+..+ ..+.++++|++|++++|....... +..+|. .+..+++|++|++++|.+.+.
T Consensus 285 ~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~-------------------~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 285 QHLFS-HSLHGLFNVRYLNLKRSFTKQSIS-------------------LASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp SEECT-TTTTTCTTCCEEECTTCBCCC-------------------------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CccCh-hhhcCCCCccEEeccchhhhcccc-------------------cccccccChhhcccCCCCCEEECCCCccCCC
Confidence 66544 566667777777776554321110 002221 456677788888888877776
Q ss_pred CChhhhhcCCCCccEEEcCCCccCC--cccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCC
Q 041976 495 IPSWISEIGKDSLSYVNLSHNFITK--MKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA 572 (901)
Q Consensus 495 ~p~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 572 (901)
.+..+ ..+++|++|++++|.+.. ++...|..+ ..++|+.|++++|++++..+..+..+++
T Consensus 345 ~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~----------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 345 KSNMF--TGLINLKYLSLSNSFTSLRTLTNETFVSL----------------AHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTTT--TTCTTCCEEECTTCBSCCCEECTTTTGGG----------------TTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ChhHh--ccccCCcEEECCCCchhhhhcchhhhccc----------------ccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 66666 455666666666664321 111111100 0135666666666666666666666666
Q ss_pred CCEEECCCCcCcccCC-cchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccc--ccCCccccCCCcccEE
Q 041976 573 LDVLDLSNNRLNGTIP-ECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG--GAIPQSLVNCTKVEVL 649 (901)
Q Consensus 573 L~~L~Ls~n~l~~~~p-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L 649 (901)
|++|++++|.+++.+| ..+..+. +|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..|..+++|++|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 6666666666665555 3344443 6666666666666666666666666666666666654 3455556666666666
Q ss_pred eCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCC
Q 041976 650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEG 729 (901)
Q Consensus 650 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~ 729 (901)
++++|++++..+..+.++++|++|++++|++.+...... |..
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~~---------------- 527 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN----------------------PGG---------------- 527 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS----------------------TTS----------------
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc----------------------cCC----------------
Confidence 666666665555555555555555555555543211100 000
Q ss_pred cccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCC
Q 041976 730 KLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL 809 (901)
Q Consensus 730 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L 809 (901)
.. .....+++|++|+|++|+++...+..|+++++|++|+|++|++++..+..|.++++|
T Consensus 528 ~~---------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 528 PI---------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp CC---------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cc---------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence 00 000115677888888888885555678899999999999999998888888999999
Q ss_pred CEEeCCCCccCCCCCcCCc-CCCCCCeeeCCCCcCccCCCC
Q 041976 810 ESLDLSSNNVAGKIPKPLT-SLTSLSVLNLSHNRLDGPIPH 849 (901)
Q Consensus 810 ~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~iP~ 849 (901)
+.|+|++|++++..|..+. .+++|+.|++++|++...-+.
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999988888777 788999999999999876553
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-56 Score=539.11 Aligned_cols=594 Identities=22% Similarity=0.221 Sum_probs=446.8
Q ss_pred ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS 300 (901)
Q Consensus 221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 300 (901)
+.+++++++++.+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 456777777777776654 577788888877777666677777888888888887777777777778888888888887
Q ss_pred CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC
Q 041976 301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF 379 (901)
Q Consensus 301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 379 (901)
+++..+. +.++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 7766554 777778888888888777666677777888888888888877777777777888888888887776654431
Q ss_pred ----CCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhh--hhhcCCCcEEEccCCccccccccccCC
Q 041976 380 ----PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYM--FAKLIKLKYLYLSHNSLSLGNTFKIDS 453 (901)
Q Consensus 380 ----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~ 453 (901)
.+++|+.|++++|.+++..|..+..+++|+.+++.++.+........ ....++|++|++++|.+++.....+..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 44678888888888887778888888888888888877653321110 012367888888888777654433321
Q ss_pred -CCCCccEEecCCcCCCCCC-hhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCccc-CCCCCCce
Q 041976 454 -PFPKFSYLSLSACNISAFP-RFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQ-IPWKNLGY 530 (901)
Q Consensus 454 -~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~ 530 (901)
..++|++|++++|+++.++ ..+..+++|++|++++|.+.+..|..+ ..+++|+.+++++|....... ..++.+
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i-- 320 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKI-- 320 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEEECTTCBCCC------CCEE--
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh--cCCCCccEEeccchhhhccccccccccc--
Confidence 1144888888888777554 567778888888888888887777777 566777888777654332110 001110
Q ss_pred eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCccc-CCc-chhcC-CCCccEEECCCCc
Q 041976 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGT-IPE-CIGNF-SPSLSVLDLRNNR 607 (901)
Q Consensus 531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~-~~~~~-~~~L~~L~L~~n~ 607 (901)
.......+++|++|++++|.+++..+..+.++++|++|++++|.+... ++. .+... .++|+.|++++|+
T Consensus 321 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 321 --------DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp --------CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred --------ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence 011122357899999999999998888899999999999999986432 222 22222 1489999999999
Q ss_pred ccccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcc--cC
Q 041976 608 LNGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHG--SV 684 (901)
Q Consensus 608 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~--~~ 684 (901)
+++..|..|..+++|++|++++|++++.+| ..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.+ .+
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 999999999999999999999999987666 679999999999999999999999999999999999999999863 34
Q ss_pred CCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEE
Q 041976 685 REFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTI 764 (901)
Q Consensus 685 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 764 (901)
+.. +..+++|+.|++++|++++..+..+ .+ +++|++|
T Consensus 473 p~~--~~~l~~L~~L~Ls~N~l~~i~~~~~-~~----------------------------------------l~~L~~L 509 (680)
T 1ziw_A 473 PSP--FQPLRNLTILDLSNNNIANINDDML-EG----------------------------------------LEKLEIL 509 (680)
T ss_dssp SCT--TTTCTTCCEEECCSSCCCCCCTTTT-TT----------------------------------------CTTCCEE
T ss_pred Ccc--cccCCCCCEEECCCCCCCcCChhhh-cc----------------------------------------ccccCEE
Confidence 433 4788999999999999986544322 11 5678888
Q ss_pred Eccccccccccc--------hhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCee
Q 041976 765 DFSSNGFDGEIS--------QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVL 836 (901)
Q Consensus 765 ~Ls~N~l~~~~~--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 836 (901)
++++|++++..+ ..|+++++|++|+|++|+++.+.+..|+++++|+.|||++|++++..+..|..+++|++|
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence 999998886432 247899999999999999997766789999999999999999998888889999999999
Q ss_pred eCCCCcCccCCCCCC--CCCCcccccccCCcCCCCCC
Q 041976 837 NLSHNRLDGPIPHGP--QFNTFQEDSYIGNLGLCGFP 871 (901)
Q Consensus 837 ~Ls~N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg~~ 871 (901)
+|++|++++..|... .+..+....+.|||..|+|+
T Consensus 590 ~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp ECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999998666432 34566666677777766654
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-52 Score=494.66 Aligned_cols=520 Identities=19% Similarity=0.178 Sum_probs=328.8
Q ss_pred CcceeecCCCCCccC-CccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcc
Q 041976 219 PIEYLDVSETSFSEL-PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLS 297 (901)
Q Consensus 219 ~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 297 (901)
.+++|++++|.++.+ |..++++++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 455555555555544 3345555555555555555555445555555555555555555555555555555555555555
Q ss_pred CCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCc--EEEccCCcccc
Q 041976 298 SNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE--YVRLSDNQLSG 374 (901)
Q Consensus 298 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~ 374 (901)
+|.+++..+. +.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+.+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 5555543322 44555555555555555542222222355555555555555544445555555555 44555554444
Q ss_pred ccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCC
Q 041976 375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454 (901)
Q Consensus 375 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 454 (901)
..+. .+.. .+|+.|++++|.. .+..+..+.+++...+....+....
T Consensus 194 ~~~~----------------------~~~~-~~L~~L~l~~~~~----~~~~~~~l~~~~l~~l~~~~~~~~~------- 239 (606)
T 3t6q_A 194 IEPG----------------------AFDS-AVFQSLNFGGTQN----LLVIFKGLKNSTIQSLWLGTFEDMD------- 239 (606)
T ss_dssp ECTT----------------------TTTT-CEEEEEECTTCSC----HHHHHHHTTTCEEEEEECCCCTTSC-------
T ss_pred cChh----------------------Hhhh-ccccccccCCchh----HHHHhhhccccchhheechhhcccc-------
Confidence 3332 2221 2344444444431 0123333333332222221111000
Q ss_pred CCCccEEecCCcCCCCCC-hhhccCC--CCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCcee
Q 041976 455 FPKFSYLSLSACNISAFP-RFLRTQD--ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYL 531 (901)
Q Consensus 455 ~~~L~~L~l~~~~l~~lp-~~l~~~~--~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L 531 (901)
. ..++ ..+..+. +|+.|++++|.+.+..+..+ ..+++|+.|++++|.++.++.. +
T Consensus 240 -----~--------~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~lp~~-l------ 297 (606)
T 3t6q_A 240 -----D--------EDISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELDLTATHLSELPSG-L------ 297 (606)
T ss_dssp -----C--------CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT--TTCTTCSEEECTTSCCSCCCSS-C------
T ss_pred -----c--------cccChhHhchhhcCceeEEEeecCccCccCHHHh--ccccCCCEEeccCCccCCCChh-h------
Confidence 0 0000 1111111 34555555555554444444 3344444444444444433221 0
Q ss_pred eccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcc-hhcCCCCccEEECCCCcccc
Q 041976 532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPEC-IGNFSPSLSVLDLRNNRLNG 610 (901)
Q Consensus 532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l~~ 610 (901)
..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|.. +..+. +|++|++++|.+++
T Consensus 298 ------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 298 ------------VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIET 364 (606)
T ss_dssp ------------CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCE
T ss_pred ------------cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCcccc
Confidence 11356677777777777777777888888888888888888777655 55554 88888998888887
Q ss_pred cC--CcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcccc-ccCCCCCcEEEccCCcCcccCCCC
Q 041976 611 SI--PGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW-LGNLPELQVLVLRSNKFHGSVREF 687 (901)
Q Consensus 611 ~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~ 687 (901)
.. +..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..+.. +..+++|++|++++|.+.+..+..
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 65 777888888999999999888888888888889999999999888776544 788889999999999887766654
Q ss_pred CCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcc
Q 041976 688 EPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS 767 (901)
Q Consensus 688 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 767 (901)
. ..+++|++|++++|++.+...... . ....+++|++|+++
T Consensus 445 ~--~~l~~L~~L~L~~n~l~~~~~~~~----------------------~----------------~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 445 F--DGLPALQHLNLQGNHFPKGNIQKT----------------------N----------------SLQTLGRLEILVLS 484 (606)
T ss_dssp T--TTCTTCCEEECTTCBCGGGEECSS----------------------C----------------GGGGCTTCCEEECT
T ss_pred H--hCCCCCCEEECCCCCCCccccccc----------------------h----------------hhccCCCccEEECC
Confidence 4 678889999999998875211000 0 00125788999999
Q ss_pred ccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCC
Q 041976 768 SNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI 847 (901)
Q Consensus 768 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 847 (901)
+|++++..|..|+++++|++|+|++|++++.+|..|+++++| .|+|++|++++..|..+..+++|++|++++|++.+..
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999865
Q ss_pred C
Q 041976 848 P 848 (901)
Q Consensus 848 P 848 (901)
+
T Consensus 564 ~ 564 (606)
T 3t6q_A 564 S 564 (606)
T ss_dssp G
T ss_pred C
Confidence 5
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-51 Score=488.01 Aligned_cols=541 Identities=22% Similarity=0.231 Sum_probs=401.5
Q ss_pred CceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCC
Q 041976 134 LTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPA 213 (901)
Q Consensus 134 L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~ 213 (901)
-++++.++..++ .+|..+. +.+++|++++|.+++..|..++++++|++|+|++| .+.+..|
T Consensus 14 ~~~~~c~~~~l~-~iP~~l~----------------~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~- 74 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTLP----------------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHE- 74 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC----------------TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECT-
T ss_pred CceEECCCCCcc-cCcCCCC----------------CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeCh-
Confidence 356777777665 5665543 67888888888888777777888888888888877 5555444
Q ss_pred CCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCE
Q 041976 214 NNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTY 293 (901)
Q Consensus 214 ~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 293 (901)
..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..++++++|++
T Consensus 75 ---------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 75 ---------------------DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp ---------------------TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ---------------------hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 78999999999999999999988999999999999999999999877888999999999
Q ss_pred EEccCCcCccc-CCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCc--EEECcCCcCcccCChhhcCCCCCcEEEccCC
Q 041976 294 LDLSSNSFFGE-IPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLV--LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN 370 (901)
Q Consensus 294 L~Ls~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 370 (901)
|++++|.+.+. .|.+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+++..|..+.. .+|++|++++|
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~ 212 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGT 212 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCc
Confidence 99999999984 35577799999999999999988888999999999 9999999999887776644 67888888887
Q ss_pred ccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcC--CCcEEEccCCccccccc
Q 041976 371 QLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLI--KLKYLYLSHNSLSLGNT 448 (901)
Q Consensus 371 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~ 448 (901)
....... ..+..++...+....+. .+...++ ....+..+. +|+.|++++|.++....
T Consensus 213 ~~~~~~~-~~l~~~~l~~l~~~~~~-----------~~~~~~i---------~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 213 QNLLVIF-KGLKNSTIQSLWLGTFE-----------DMDDEDI---------SPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp SCHHHHH-HHTTTCEEEEEECCCCT-----------TSCCCCC---------CGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred hhHHHHh-hhccccchhheechhhc-----------ccccccc---------ChhHhchhhcCceeEEEeecCccCccCH
Confidence 5211000 01111111111111110 1111111 112233322 55666666666554332
Q ss_pred cccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCC
Q 041976 449 FKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNL 528 (901)
Q Consensus 449 ~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L 528 (901)
.. ...+++|++|++++|.++.+|..+..+++|++|++++|++.+..|..+ ..++
T Consensus 272 ~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~----------------------- 325 (606)
T 3t6q_A 272 NT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFP----------------------- 325 (606)
T ss_dssp TT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCT-----------------------
T ss_pred HH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh--hccC-----------------------
Confidence 22 234566666666666666777777777777777777777776655554 3333
Q ss_pred ceeeccCccccCCCCCCCCCCcEEEccCCcccccccc-ccccCCCCCEEECCCCcCcccC--CcchhcCCCCccEEECCC
Q 041976 529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIH-SICDIIALDVLDLSNNRLNGTI--PECIGNFSPSLSVLDLRN 605 (901)
Q Consensus 529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~~~~~L~~L~L~~ 605 (901)
+|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+. +|++|++++
T Consensus 326 -------------------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~ 385 (606)
T 3t6q_A 326 -------------------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSY 385 (606)
T ss_dssp -------------------TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECCS
T ss_pred -------------------cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC-CCCEEECCC
Confidence 344444444555433333 3667788888888888887554 56666665 888888888
Q ss_pred CcccccCCcCccCCCccCEEEccCCcccccCCcc-ccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCccc-
Q 041976 606 NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQS-LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS- 683 (901)
Q Consensus 606 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~- 683 (901)
|++.+..|..|..+++|++|++++|++++..+.. +..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 8888888888888888888888888888766544 78888888888888888888888888888888888888888763
Q ss_pred CCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeE
Q 041976 684 VREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTT 763 (901)
Q Consensus 684 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 763 (901)
++....+..+++|++|++++|++++..|..+ . .++.|++
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~----------------------------------------~l~~L~~ 504 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-T----------------------------------------SLKMMNH 504 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTT-T----------------------------------------TCTTCCE
T ss_pred cccchhhccCCCccEEECCCCccCccChhhh-c----------------------------------------cccCCCE
Confidence 2333345678899999999999887666432 1 1577899
Q ss_pred EEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCC
Q 041976 764 IDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIP 824 (901)
Q Consensus 764 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p 824 (901)
|+|++|++++.+|..+.++++| +|+|++|++++.+|..|+.+++|+.|++++|++.+..+
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999999 99999999999999999999999999999999987544
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-53 Score=503.03 Aligned_cols=521 Identities=17% Similarity=0.196 Sum_probs=359.8
Q ss_pred CCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCcCc---cceeecCCCCeEEEEEcCCCCCCCCCCCCccc
Q 041976 27 CPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSW---DGVTCDMATGNVISLDLSCSWLHGNIPTNTSL 103 (901)
Q Consensus 27 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l 103 (901)
....|++||.+||+++..+.-. ..+.+++..++|..+++||.| .||+|+.. |||++|+|+++++.|.+|+ ++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~--~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l 101 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWS--QQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AI 101 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCC--CCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GG
T ss_pred hHHHHHHHHHHHHHHcCCCCcc--cCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HH
Confidence 4457999999999998654210 122356677899988999999 99999864 9999999999999999998 99
Q ss_pred ccCccCceEeCCCCCCC------C-----CcCCccccCCCCCceeeCCCCcCCCCCCccccccccccc--chh--hcc-c
Q 041976 104 FHLLHLQTLNLSHNDFD------Y-----SEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTV--VLD--SLK-N 167 (901)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~------~-----~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~--~~~--~~~-~ 167 (901)
+++++|++|+|++|.+. + ..+|... +.+|+ ++++++.+.+.+|..++.+..... .+. .+. .
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 99999999999999752 1 0244433 56777 888888888888877764300000 000 000 0
Q ss_pred CCCCccEEEcC--CCcCCCCCccccCCCCCCCEEeCCCCCCCCcc-CCCCCCCCCcceeecCCCCC-ccCCcccc--CCC
Q 041976 168 LSSSLTSLSLS--DCILQGNFPINIFHLPNPQMIRLSQNPSLAGK-FPANNWTSPIEYLDVSETSF-SELPDSIG--NLK 241 (901)
Q Consensus 168 l~~~L~~L~Ls--~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~-~~~~~~~~~L~~L~Ls~~~l-~~lp~~l~--~l~ 241 (901)
....++.+.+. +|.+++ +|..++++++|++|+|++| .++|. ++. .+.+. +.... ..+|+.++ +++
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~-~~~~~------~~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS-PFVAENICE-AWENE------NSEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSS-SCSCT------TSHHHHHHTTSCCCGGGCT
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC-ccccccccc-ccccc------ccchhcccCchhhhhcccC
Confidence 00122222222 356666 6777777777777777777 56553 110 00000 00000 01668888 899
Q ss_pred CcCEEECCCCCCccCCCccccCCCCCCEEECCCCc-CCC-CCCccccCC------CCCCEEEccCCcCcccCC--CCCCC
Q 041976 242 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNN-FSG-HIPSSLSNL------VQLTYLDLSSNSFFGEIP--DIFNL 311 (901)
Q Consensus 242 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~~--~~~~l 311 (901)
+|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++..++ .+.++
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l 329 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccC
Confidence 99999999999888899889999999999999998 887 788887776 889999999999884333 37888
Q ss_pred CCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCC-CcEEEccCCccccccCCC---CCCCCCEE
Q 041976 312 TQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPL-LEYVRLSDNQLSGHIDEF---PSKSLQNI 387 (901)
Q Consensus 312 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~---~~~~L~~L 387 (901)
++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++...... .+++|+.|
T Consensus 330 ~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEE
T ss_pred CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEE
Confidence 999999999999988888 8888899999999999988 77888888888 999999999888433322 23479999
Q ss_pred EccCccCCCCCchhhh-------cccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCC------C
Q 041976 388 YLSNNRLQGSIPSSIF-------ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDS------P 454 (901)
Q Consensus 388 ~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------~ 454 (901)
++++|.+++.+|..+. .+++|++|++++|.++++ +...+..+++|++|++++|.++......+.. .
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 9999999988888887 778999999999999965 4466777899999999999887333222110 1
Q ss_pred CCCccEEecCCcCCCCCChhhc--cCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceee
Q 041976 455 FPKFSYLSLSACNISAFPRFLR--TQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLD 532 (901)
Q Consensus 455 ~~~L~~L~l~~~~l~~lp~~l~--~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~ 532 (901)
+++|++|++++|+++.+|..+. .+++|++|++++|++++ +|..+ ..+++|+.|++++|.
T Consensus 487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~--~~l~~L~~L~Ls~N~---------------- 547 (636)
T 4eco_A 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP--LNSSTLKGFGIRNQR---------------- 547 (636)
T ss_dssp GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG--GGCSSCCEEECCSCB----------------
T ss_pred cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhh--hcCCCCCEEECCCCc----------------
Confidence 1267777777777777776665 66777777777777765 55555 344444444444432
Q ss_pred ccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccc
Q 041976 533 LRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG 610 (901)
Q Consensus 533 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 610 (901)
++++|++.+.+|..+..+++|++|++++|.+ +.+|..+. ++|+.|++++|++..
T Consensus 548 --------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~---~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 --------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT---PNISVLDIKDNPNIS 601 (636)
T ss_dssp --------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---TTCCEEECCSCTTCE
T ss_pred --------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh---CcCCEEECcCCCCcc
Confidence 2344555556666666666666666666666 35555433 356666666665543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-51 Score=485.01 Aligned_cols=536 Identities=21% Similarity=0.173 Sum_probs=363.8
Q ss_pred ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS 300 (901)
Q Consensus 221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 300 (901)
+++++++++++.+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 466777777777776654 677777777777777666677777777888877777777777777777778888887777
Q ss_pred CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcc-cCChhhcCCCCCcEEEccCCccccccCC
Q 041976 301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG-TIPSWLFSLPLLEYVRLSDNQLSGHIDE 378 (901)
Q Consensus 301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 378 (901)
+++..|. +.++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 7776665 7777778888888777776666777777888888888877765 4577777788888888888777765544
Q ss_pred C--CCCC----CCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccC
Q 041976 379 F--PSKS----LQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID 452 (901)
Q Consensus 379 ~--~~~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 452 (901)
. .+.+ ++.+++++|.+++..+..+... +|+.|++++|.+.+...+..+++++.|+.+++..+.+........
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~- 249 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI- 249 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC-
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc-
Confidence 3 2222 4578888888775555544444 788888888888755555778888888888876554432211100
Q ss_pred CCCCCccEEecCCcCCCCCChhhccCCCCCEEeC-CCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCcee
Q 041976 453 SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDL-SENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYL 531 (901)
Q Consensus 453 ~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l-s~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L 531 (901)
+ .. ..+..+..+ .++.+++ ..+.+.+..|. + ..+++|+.+++++|.++.++. +.
T Consensus 250 --------~--~~----~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~l~~--l~----- 304 (606)
T 3vq2_A 250 --------F--EP----SIMEGLCDV-TIDEFRLTYTNDFSDDIVK-F--HCLANVSAMSLAGVSIKYLED--VP----- 304 (606)
T ss_dssp --------C--CG----GGGTTGGGS-EEEEEEECCCTTCCGGGGS-C--GGGTTCSEEEEESCCCCCCCC--CC-----
T ss_pred --------c--Ch----HHhhhhhhc-cHhheeccccccccccccc-c--ccCCCCCEEEecCccchhhhh--cc-----
Confidence 0 00 001112222 3556666 55566666655 3 455666777776666655541 11
Q ss_pred eccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccccc
Q 041976 532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS 611 (901)
Q Consensus 532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 611 (901)
..++|++|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..++ +|++|++++|.+++.
T Consensus 305 -------------~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~ 365 (606)
T 3vq2_A 305 -------------KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYLDLSRNALSFS 365 (606)
T ss_dssp -------------TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEEECCSSCEEEE
T ss_pred -------------ccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCC-CCCEEECcCCccCCC
Confidence 124555555666655 3444 33 6666666666666544333 233443 666777776666654
Q ss_pred --CCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcc-ccccCCCCCcEEEccCCcCcccCCCCC
Q 041976 612 --IPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFP-YWLGNLPELQVLVLRSNKFHGSVREFE 688 (901)
Q Consensus 612 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~ 688 (901)
.|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..+...
T Consensus 366 ~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 366 GCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp EECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 25566666677777777776664 34566667777777777777766665 556667777777777777666555433
Q ss_pred CCCCCCCCcEEEcCCCccccC-CcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcc
Q 041976 689 PKESFPKLRILDLSINNFSGY-LPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS 767 (901)
Q Consensus 689 ~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 767 (901)
..+++|++|++++|.+.+. +|..+ ..+++|++|+++
T Consensus 445 --~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------------------------~~l~~L~~L~Ls 481 (606)
T 3vq2_A 445 --LGLTSLNTLKMAGNSFKDNTLSNVF-----------------------------------------ANTTNLTFLDLS 481 (606)
T ss_dssp --TTCTTCCEEECTTCEEGGGEECSCC-----------------------------------------TTCTTCCEEECT
T ss_pred --cCCCCCCEEECCCCcCCCcchHHhh-----------------------------------------ccCCCCCEEECC
Confidence 5667777777777777652 33211 115678888888
Q ss_pred ccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCC-CCCeeeCCCCcCccC
Q 041976 768 SNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT-SLSVLNLSHNRLDGP 846 (901)
Q Consensus 768 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ 846 (901)
+|++++.+|..|+++++|++|+|++|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|++|++++|++.+.
T Consensus 482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 88888888888999999999999999999999999999999999999999998 5666788886 599999999999876
Q ss_pred CCC
Q 041976 847 IPH 849 (901)
Q Consensus 847 iP~ 849 (901)
.|.
T Consensus 561 c~~ 563 (606)
T 3vq2_A 561 CEH 563 (606)
T ss_dssp STT
T ss_pred Ccc
Confidence 553
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.6e-50 Score=473.13 Aligned_cols=523 Identities=23% Similarity=0.199 Sum_probs=263.6
Q ss_pred ccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCC
Q 041976 107 LHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNF 186 (901)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~ 186 (901)
+++++|+|++|.+++. .+..|+++++|++|+|++|.+.+..|..++++ ++|++|++++|.+++..
T Consensus 32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l--------------~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGL--------------HHLSNLILTGNPIQSFS 96 (606)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--------------TTCCEEECTTCCCCCCC
T ss_pred CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhch--------------hhcCEeECCCCcccccC
Confidence 4555555555555543 33345555555555555555554444444444 44555555554444444
Q ss_pred ccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCcc-CCCccccCCC
Q 041976 187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVG-PVPASLGNLT 265 (901)
Q Consensus 187 p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~ 265 (901)
|..++++++|++|++++| .+.+..+ ..++++++|++|++++|.+.+ .+|..+++++
T Consensus 97 p~~~~~l~~L~~L~L~~n-~l~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVET-KLASLES----------------------FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp TTSSTTCTTCCEEECTTS-CCCCSSS----------------------SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred hhhcCCcccCCEEEccCC-ccccccc----------------------cccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 444444444444444444 2222211 334555555555555555443 3344455555
Q ss_pred CCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcC
Q 041976 266 QLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345 (901)
Q Consensus 266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 345 (901)
+|++|++++|.+++..|..++.+++|+. .+++|++++|.+++..+..+... +|++|++++
T Consensus 154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~ 213 (606)
T 3vq2_A 154 NLVHVDLSYNYIQTITVNDLQFLRENPQ-------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG 213 (606)
T ss_dssp TCCEEECCSSCCCEECTTTTHHHHHCTT-------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEES
T ss_pred CCCEEEccCCcceecChhhhhhhhcccc-------------------ccceeeccCCCcceeCcccccCc-eeeeeeccC
Confidence 5555555555544444444433333220 02245555555543333333322 566666666
Q ss_pred CcCc-ccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceec-ccCcCCCccc
Q 041976 346 NSFS-GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQL-DSNNFSGIAE 423 (901)
Q Consensus 346 n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~ 423 (901)
|.+. +..|..+..++.|+.+++..+.+.+... +.. +....+..+..+ .++.+++ ..+.+.+..+
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~------l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN------LEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC------CSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGG
T ss_pred CccchhHHHHHhccccccccccccccccccCCc------ccc-------cChHHhhhhhhc-cHhheecccccccccccc
Confidence 6554 3455566666666666665443332110 000 001111122222 3445555 4455555544
Q ss_pred hhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcC
Q 041976 424 PYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG 503 (901)
Q Consensus 424 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 503 (901)
. +..+++|+.|++++|.+.... ....+++|++|++++|.+..+|.+ .+++|++|++++|+..+..+ +
T Consensus 280 -~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~--~---- 346 (606)
T 3vq2_A 280 -K-FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFK--K---- 346 (606)
T ss_dssp -S-CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECC--C----
T ss_pred -c-cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchh--h----
Confidence 2 566666666666666554322 122334444444444444444422 44444444444443221110 0
Q ss_pred CCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccc--cccccccCCCCCEEECCCC
Q 041976 504 KDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE--IIHSICDIIALDVLDLSNN 581 (901)
Q Consensus 504 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n 581 (901)
..+++|++|++++|.+++. .+..+..+++|++|++++|
T Consensus 347 ----------------------------------------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 347 ----------------------------------------VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp ----------------------------------------CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred ----------------------------------------ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 0123344444444444433 2344445555555555555
Q ss_pred cCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCCcCccCc
Q 041976 582 RLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAF 660 (901)
Q Consensus 582 ~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 660 (901)
.++ .+|. .|..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..
T Consensus 387 ~l~-~~~~-------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 387 GAI-IMSA-------------------------NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp SEE-EECC-------------------------CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred ccc-cchh-------------------------hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 544 2333 44444444444444444444443 34444445555555555554444
Q ss_pred cccccCCCCCcEEEccCCcCccc-CCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccce
Q 041976 661 PYWLGNLPELQVLVLRSNKFHGS-VREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYY 739 (901)
Q Consensus 661 ~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~ 739 (901)
|..+.++++|++|++++|++.+. ++... ..+++|++|++++|++++..|..+ .
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~-~----------------------- 494 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVF-D----------------------- 494 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTT-T-----------------------
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhh-c-----------------------
Confidence 44455555555555555554442 22222 445566666666666655444321 0
Q ss_pred eceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCC-CCCEEeCCCCc
Q 041976 740 QDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLA-KLESLDLSSNN 818 (901)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~Ls~N~ 818 (901)
.+++|++|++++|++++.+|..|+++++|++|+|++|+++ .+|..+..++ +|+.|++++|+
T Consensus 495 -----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 495 -----------------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp -----------------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred -----------------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 1466788888888888888889999999999999999999 5666688887 69999999999
Q ss_pred cCCCCC
Q 041976 819 VAGKIP 824 (901)
Q Consensus 819 l~~~~p 824 (901)
+.+..+
T Consensus 557 ~~c~c~ 562 (606)
T 3vq2_A 557 VACICE 562 (606)
T ss_dssp CCCSST
T ss_pred cccCCc
Confidence 987544
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-50 Score=483.20 Aligned_cols=518 Identities=17% Similarity=0.195 Sum_probs=284.0
Q ss_pred CCCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCC-----CCC--cCc------------cceeecCCCCeEE
Q 041976 24 AKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKD-----TNC--CSW------------DGVTCDMATGNVI 84 (901)
Q Consensus 24 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~-----~~~--c~w------------~gv~c~~~~~~v~ 84 (901)
+.++..+|++||++||+++.++ +|..+ .+| |.| .||+|+. .+||+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~---------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~ 326 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK---------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVT 326 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG---------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEE
T ss_pred ccccchHHHHHHHHHHHHcCCC---------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEE
Confidence 4456678999999999999532 46432 244 999 9999986 69999
Q ss_pred EEEcCCCCCCCCCCCCcccccCccCceEeC-CCCCCCCCcCCccccCC----C-----CCce------eeC-CCCcCCCC
Q 041976 85 SLDLSCSWLHGNIPTNTSLFHLLHLQTLNL-SHNDFDYSEISSGFSRF----R-----NLTH------FSL-SDSNINCK 147 (901)
Q Consensus 85 ~l~L~~~~~~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~~~~l~~l----~-----~L~~------L~L-s~~~~~~~ 147 (901)
+|+|+++++.|.+|+ ++++|++|++|+| ++|.+.+. .|-..... . .++. ++. ....+.+.
T Consensus 327 ~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp EEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred EEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 999999999999998 9999999999999 88876654 11110000 0 0000 000 00000000
Q ss_pred CCcccccccccccchhhcc-cCCCCccEEEcCC--CcCCCCCccccCCCCCCCEEeCCCCCCCCc---------------
Q 041976 148 IPYEISFLKMSTVVLDSLK-NLSSSLTSLSLSD--CILQGNFPINIFHLPNPQMIRLSQNPSLAG--------------- 209 (901)
Q Consensus 148 ~p~~l~~l~~~~~~~~~~~-~l~~~L~~L~Ls~--~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~--------------- 209 (901)
++..+..- .....+. .-...++.+.+.. |.+++ +|..++++++|++|+|++| .++|
T Consensus 404 ~~~~l~~~----~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 404 LQDAINRN----PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp HHHHHHTC----TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHH
T ss_pred HHHHhhhC----ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccc
Confidence 00000000 0000000 0002233333332 55555 5666666666666666666 5555
Q ss_pred --cCCC-CC--CCCCcceeecCCCCCc-cCCccccCCCCcCEEECCCCC-Ccc-CCCccccCCC-------CCCEEECCC
Q 041976 210 --KFPA-NN--WTSPIEYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQ-FVG-PVPASLGNLT-------QLTLLHLMH 274 (901)
Q Consensus 210 --~~~~-~~--~~~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~-~~~-~~p~~l~~l~-------~L~~L~L~~ 274 (901)
.+|. +. .+++|++|+|++|.+. .+|..++++++|++|++++|+ +++ .+|..+++++ +|++|++++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 2332 12 3333333333333322 334555556666666666655 554 4554443333 566666666
Q ss_pred CcCCCCCCc--cccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcC-CcEEECcCCcCccc
Q 041976 275 NNFSGHIPS--SLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQN-LVLIRLNNNSFSGT 351 (901)
Q Consensus 275 n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~ 351 (901)
|.++ .+|. .++++++|++|++++|.++ .+|.+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 6555 5555 5555666666666666555 4445555555666666655555 45555555555 566666555555 4
Q ss_pred CChhhcCCCC--CcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhh--cccccCceecccCcCCCccchhhh
Q 041976 352 IPSWLFSLPL--LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF--ELVNLTDLQLDSNNFSGIAEPYMF 427 (901)
Q Consensus 352 ~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l 427 (901)
+|..+..++. |+.|++++|.+.+.++... ..+. .+++|+.|++++|.++.+ +...+
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-------------------~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~ 693 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-------------------CSMDDYKGINASTVTLSYNEIQKF-PTELF 693 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-------------------SCTTTCCCCCEEEEECCSSCCCSC-CHHHH
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccch-------------------hhhccccCCCcCEEEccCCcCCcc-CHHHH
Confidence 4544444332 5555555555544333210 1111 223555666666665543 32444
Q ss_pred hhcCCCcEEEccCCccccccccccC------CCCCCccEEecCCcCCCCCChhhc--cCCCCCEEeCCCCcccccCChhh
Q 041976 428 AKLIKLKYLYLSHNSLSLGNTFKID------SPFPKFSYLSLSACNISAFPRFLR--TQDELSYLDLSENKIDGQIPSWI 499 (901)
Q Consensus 428 ~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~~L~~L~l~~~~l~~lp~~l~--~~~~L~~L~ls~n~l~~~~p~~~ 499 (901)
..+++|+.|++++|.++......+. ..+++|+.|++++|+++.+|..+. .+++|+.|++++|++.+ +|..+
T Consensus 694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence 4556666666666655522211111 112367777777777777776665 77777777777777776 55555
Q ss_pred hhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECC
Q 041976 500 SEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLS 579 (901)
Q Consensus 500 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 579 (901)
..+++|+.|++++|. ++++|++.+.+|..+.++++|++|+++
T Consensus 773 --~~L~~L~~L~Ls~N~------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 773 --LNSSQLKAFGIRHQR------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp --GGCTTCCEEECCCCB------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred --hcCCCCCEEECCCCC------------------------------------CcccccccccChHHHhcCCCCCEEECC
Confidence 344555555554442 334566666667777777777777777
Q ss_pred CCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccc
Q 041976 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG 633 (901)
Q Consensus 580 ~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 633 (901)
+|.+ +.+|..+. ++|+.|+|++|++....+..|.....+..+.|.+|+..
T Consensus 815 ~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 815 SNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp SSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCC-CccCHhhc---CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 7777 46666543 36777777777766555555554444555555555443
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-49 Score=482.96 Aligned_cols=545 Identities=21% Similarity=0.221 Sum_probs=346.0
Q ss_pred ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCC-CccccCCCCCCEEEccCC
Q 041976 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHI-PSSLSNLVQLTYLDLSSN 299 (901)
Q Consensus 221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n 299 (901)
+..+.++++++.+|. ..+++++|+|++|.+.+..|..|.++++|++|++++|...+.+ |..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 456777777888876 3467888888888887777777888888888888877554444 667777777777777777
Q ss_pred cCcccCCC-CCCCCCCCEEECCCCCCCCCCCcc--ccCCcCCcEEECcCCcCcccCC-hhhcCCCCCcEEEccCCccccc
Q 041976 300 SFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSH--GSRLQNLVLIRLNNNSFSGTIP-SWLFSLPLLEYVRLSDNQLSGH 375 (901)
Q Consensus 300 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~ 375 (901)
.+.+..|. +.++++|++|++++|.+++.+|.. ++.+++|++|++++|.+++..+ ..++++++|++|++++|.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-- 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-- 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC--
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC--
Confidence 77776665 667777777777777776655443 6667777777777776665443 35566666665555555443
Q ss_pred cCCCCCCCCCEEEccCccCCCCCchhhhcc--cccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCC
Q 041976 376 IDEFPSKSLQNIYLSNNRLQGSIPSSIFEL--VNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDS 453 (901)
Q Consensus 376 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 453 (901)
+..+..+..+ ++|+.|+++.|.+.+..+ ..++.+++
T Consensus 162 --------------------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~--------------------- 199 (844)
T 3j0a_A 162 --------------------LVCEHELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMN--------------------- 199 (844)
T ss_dssp --------------------CCCSGGGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSC---------------------
T ss_pred --------------------eeCHHHcccccCCccceEECCCCccccccc-cchhhcCC---------------------
Confidence 3444455554 566666666666655433 11111111
Q ss_pred CCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhh-cCCCCccEEEcCCCccCCcccCCCCCCceee
Q 041976 454 PFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE-IGKDSLSYVNLSHNFITKMKQIPWKNLGYLD 532 (901)
Q Consensus 454 ~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~ 532 (901)
.+.. ..|+.|++++|.+.+..+..+.. .....+..+.++.+.+.... .+.++..
T Consensus 200 --------------------~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~--~~~~l~~-- 254 (844)
T 3j0a_A 200 --------------------PFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF--GFHNIKD-- 254 (844)
T ss_dssp --------------------TTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS--SCSSSTT--
T ss_pred --------------------cccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc--cccccCC--
Confidence 0000 12344444444333333333211 11123334443322111000 0000000
Q ss_pred ccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccC
Q 041976 533 LRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSI 612 (901)
Q Consensus 533 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 612 (901)
...+.+.+ ..+++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+. +|++|++++|.+++..
T Consensus 255 ~~~~~f~~---l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 255 PDQNTFAG---LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELY 330 (844)
T ss_dssp GGGTTTTT---TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCC
T ss_pred CChhhhhc---cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccC
Confidence 00000000 1135677777777777777777777777777777777777766666666665 7777777777777777
Q ss_pred CcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCC
Q 041976 613 PGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES 692 (901)
Q Consensus 613 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 692 (901)
|..|..+++|++|++++|++.+..+..|..+++|++|++++|.+++. ..+++|+.|++++|++.. ++ ..
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~-----~~ 399 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LP-----KI 399 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CC-----CC
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cc-----cc
Confidence 77777777777777777777777777777777777777777777643 236777777777777762 22 12
Q ss_pred CCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccc
Q 041976 693 FPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFD 772 (901)
Q Consensus 693 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 772 (901)
..+++.|++++|++.+.-...++..+++|+.+++++|.+..+...... ..+++|+.|++++|.++
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---------------SENPSLEQLFLGENMLQ 464 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------CSCTTCCBCEEESCCCS
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------ccCCccccccCCCCccc
Confidence 456777777777777654444555677777777777766544321100 11467788888888876
Q ss_pred -----cccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCC
Q 041976 773 -----GEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI 847 (901)
Q Consensus 773 -----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 847 (901)
+..+..|.++++|++|+|++|++++.+|..|.++++|+.|+|++|++++..|..+. ++|++|+|++|++++.+
T Consensus 465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence 44456677888888888888888888888888888888888888888877776665 78888888888888877
Q ss_pred CCCCCCCCcccccccCCcCCCCCC
Q 041976 848 PHGPQFNTFQEDSYIGNLGLCGFP 871 (901)
Q Consensus 848 P~~~~~~~~~~~~~~~n~~lcg~~ 871 (901)
|.. +..+....+.|||..|+|+
T Consensus 543 ~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 543 PDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCC--CSSCCEEEEEEECCCCSSS
T ss_pred hhH--hCCcCEEEecCCCcccccc
Confidence 754 4566667777888777654
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-48 Score=476.08 Aligned_cols=524 Identities=21% Similarity=0.189 Sum_probs=364.9
Q ss_pred cCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCC-CcccccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976 105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKI-PYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ 183 (901)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~ 183 (901)
-.++|++|||++|.+++. .|..|+++++|++|+|++|...+.+ |..++++ ++|++|+|++|.+.
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L--------------~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL--------------PNLRILDLGSSKIY 86 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC--------------TTCCEEECTTCCCC
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCC--------------CCCCEEECCCCcCc
Confidence 346888888888888775 5777888888888888888766666 6667777 88888888888888
Q ss_pred CCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCC-cccc
Q 041976 184 GNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVP-ASLG 262 (901)
Q Consensus 184 ~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~l~ 262 (901)
+..|..++++++|++|+|++| .+++.+|. +..++++++|++|++++|.+.+..+ ..++
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~--------------------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFC-GLSDAVLK--------------------DGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTC-CCSSCCST--------------------TCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred ccCHhHccCCcccCEeeCcCC-CCCccccc--------------------CccccccCCCCEEECCCCcccccccchhHh
Confidence 777888888888888888888 66655441 0237888889999999988887654 5688
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCC--CCCCEEEccCCcCcccCCC-CCCCCC------CCEEECCCCCCCCCCCcccc
Q 041976 263 NLTQLTLLHLMHNNFSGHIPSSLSNL--VQLTYLDLSSNSFFGEIPD-IFNLTQ------VSFFDLSNNQLAGPIPSHGS 333 (901)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~-~~~l~~------L~~L~l~~n~l~~~~~~~~~ 333 (901)
++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+. +..+++ |++|++++|.+.+..+..+.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 88889999998888888888888777 7888888888888876654 444443 77777777777766665554
Q ss_pred CC---cCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccC----CCCCCCCCEEEccCccCCCCCchhhhccc
Q 041976 334 RL---QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID----EFPSKSLQNIYLSNNRLQGSIPSSIFELV 406 (901)
Q Consensus 334 ~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 406 (901)
.. .+++.+.++.+.+.... ..+.+.+... ....++|+.|++++|.+.+..+..+..++
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~---------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 290 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGF---------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSS---------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred hhcCcccccceecccccccccc---------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC
Confidence 32 45566665533322110 0111111110 11235677777777777766666777777
Q ss_pred ccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeC
Q 041976 407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDL 486 (901)
Q Consensus 407 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l 486 (901)
+|+.|++++|.+.+..+ ..|..+++|++|++++|.++.... ..+..+++|++|++
T Consensus 291 ~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYS------------------------SNFYGLPKVAYIDL 345 (844)
T ss_dssp CCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCCCS------------------------CSCSSCTTCCEEEC
T ss_pred CCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCccCH------------------------HHhcCCCCCCEEEC
Confidence 77777777777776644 566666777777777666653322 23344444555555
Q ss_pred CCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcccccc-cc
Q 041976 487 SENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEI-IH 565 (901)
Q Consensus 487 s~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~~ 565 (901)
++|.+.+..+..+ ..+++|+.|++++|.++.+.. +++|+.+++++|++. .+|....+++.|++++|.+++.. +.
T Consensus 346 ~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 346 QKNHIAIIQDQTF--KFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CSCCCCCCCSSCS--CSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred CCCCCCccChhhh--cCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcc-cccccccccceeecccCccccCchhh
Confidence 5554444444333 334455555555555554433 455666666666665 33444567888888888887643 23
Q ss_pred ccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc-----ccCCcCccCCCccCEEEccCCcccccCCccc
Q 041976 566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN-----GSIPGTFAESNWLRSLNLNNNELGGAIPQSL 640 (901)
Q Consensus 566 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 640 (901)
.+..+++|++|++++|.+++..+.......++|+.|++++|.++ +..+..|..+++|++|+|++|++++..|..|
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 500 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc
Confidence 45578899999999999886544333222358999999999887 3445678889999999999999998888889
Q ss_pred cCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHH
Q 041976 641 VNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLE 716 (901)
Q Consensus 641 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 716 (901)
..+++|++|++++|++++..+..+. ++|++|++++|++++..+.. +.+|+.+++++|++.+..+..++.
T Consensus 501 ~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-----~~~L~~l~l~~Np~~C~c~~~~f~ 569 (844)
T 3j0a_A 501 SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-----FVSLSVLDITHNKFICECELSTFI 569 (844)
T ss_dssp SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-----CSSCCEEEEEEECCCCSSSCCSHH
T ss_pred cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-----hCCcCEEEecCCCcccccccHHHH
Confidence 9999999999999999988777665 88999999999998876644 458899999999998876644433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=440.15 Aligned_cols=516 Identities=18% Similarity=0.171 Sum_probs=330.0
Q ss_pred ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS 300 (901)
Q Consensus 221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 300 (901)
+.++.++.+++.+|..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred cEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 345555555555555443 356666666666665555566666666666666666665555556666666666666666
Q ss_pred CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcc-cCChhhcCCCCCcEEEccCCccccccCC
Q 041976 301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG-TIPSWLFSLPLLEYVRLSDNQLSGHIDE 378 (901)
Q Consensus 301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 378 (901)
+++..+. +.++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 6655544 5566666666666666654444456666666666666666654 2456666666666666666655543322
Q ss_pred C--CCCCC----CEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccC
Q 041976 379 F--PSKSL----QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID 452 (901)
Q Consensus 379 ~--~~~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 452 (901)
. .+++| +.+++++|.+++..+..+... +|+.|++++|.......+..+..++.++...+....+....
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~----- 241 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG----- 241 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS-----
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch-----
Confidence 1 22333 455666666655555555444 56666666664443333345566666665555433221100
Q ss_pred CCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCC-cccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCcee
Q 041976 453 SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSEN-KIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYL 531 (901)
Q Consensus 453 ~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n-~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L 531 (901)
.++. +....+ ..+..+ .++.++++++ .+.+..|..+ ..+
T Consensus 242 ----~l~~--~~~~~~----~~l~~l-~l~~l~l~~~~~~~~~~~~~~--~~l--------------------------- 281 (570)
T 2z63_A 242 ----NLEK--FDKSAL----EGLCNL-TIEEFRLAYLDYYLDDIIDLF--NCL--------------------------- 281 (570)
T ss_dssp ----SCEE--CCTTTT----GGGGGS-EEEEEEEEETTEEESCSTTTT--GGG---------------------------
T ss_pred ----hhhh--cchhhh----cccccc-chhhhhhhcchhhhhhchhhh--cCc---------------------------
Confidence 0000 000000 001111 2344444444 3444444433 222
Q ss_pred eccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccccc
Q 041976 532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS 611 (901)
Q Consensus 532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 611 (901)
++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+. +|+.|++++|.+.+.
T Consensus 282 ---------------~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~-~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 282 ---------------TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK-SLKRLTFTSNKGGNA 340 (570)
T ss_dssp ---------------TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS-SCCEEEEESCBSCCB
T ss_pred ---------------CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccc-ccCEEeCcCCccccc
Confidence 34455555555555 344455555 7777777777776 5554 2333 777777777777665
Q ss_pred CCcCccCCCccCEEEccCCcccccC--CccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976 612 IPGTFAESNWLRSLNLNNNELGGAI--PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689 (901)
Q Consensus 612 ~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 689 (901)
.+. ..+++|++|++++|++++.. +..+..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..+. ..
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-~~ 416 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-SV 416 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS-CT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch-hh
Confidence 543 66777888888888777554 56677788888888888887776555 77888888888888887765442 12
Q ss_pred CCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976 690 KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN 769 (901)
Q Consensus 690 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 769 (901)
+..+++|++|++++|.+.+..|..+ ..+++|++|++++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~-----------------------------------------~~l~~L~~L~l~~n 455 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIF-----------------------------------------NGLSSLEVLKMAGN 455 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTT-----------------------------------------TTCTTCCEEECTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhh-----------------------------------------hcCCcCcEEECcCC
Confidence 3677888888888888877655322 11577889999999
Q ss_pred ccc-cccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCC
Q 041976 770 GFD-GEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP 848 (901)
Q Consensus 770 ~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP 848 (901)
.++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..|
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 987 6788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 041976 849 HG 850 (901)
Q Consensus 849 ~~ 850 (901)
..
T Consensus 536 ~~ 537 (570)
T 2z63_A 536 RI 537 (570)
T ss_dssp TT
T ss_pred ch
Confidence 65
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.1e-46 Score=433.72 Aligned_cols=494 Identities=17% Similarity=0.165 Sum_probs=275.3
Q ss_pred eeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcC
Q 041976 222 YLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSF 301 (901)
Q Consensus 222 ~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 301 (901)
+.+++++.++.+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..|+.+++|++|++++|.+
T Consensus 9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred eEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 35666667777776554 5777777777777766666777777777777777777766666677777777777777777
Q ss_pred cccCCC-CCCCCCCCEEECCCCCCCC-CCCccccCCcCCcEEECcCCcCcccC-ChhhcCCCCCcEEEccCCccccccCC
Q 041976 302 FGEIPD-IFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLIRLNNNSFSGTI-PSWLFSLPLLEYVRLSDNQLSGHIDE 378 (901)
Q Consensus 302 ~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~ 378 (901)
++..+. +.++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..+..+++|++|++++|.+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 161 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR----- 161 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence 666555 6666677777777766664 24555666666666666666632233 245555555555555555444
Q ss_pred CCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCc
Q 041976 379 FPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKF 458 (901)
Q Consensus 379 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 458 (901)
+..|..++.+++|++|+++.|.+... +...+..+++|++|++++|.+++......
T Consensus 162 -----------------~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------- 216 (549)
T 2z81_A 162 -----------------NYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPL------- 216 (549)
T ss_dssp -----------------EECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCC-------
T ss_pred -----------------ccChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCcccccccccc-------
Confidence 44455555566666666666655443 22334456666666666666654321100
Q ss_pred cEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhh--cCCCCccEEEcCCCccCCcccCCCCCCceeeccCc
Q 041976 459 SYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE--IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSN 536 (901)
Q Consensus 459 ~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n 536 (901)
.....+++|+.|++++|.+.+..+..+.. .....++.+++++|.+.++......
T Consensus 217 --------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~---------- 272 (549)
T 2z81_A 217 --------------PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS---------- 272 (549)
T ss_dssp --------------SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC----------
T ss_pred --------------chhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc----------
Confidence 00112334444444444444333322210 1123333343333333322111000
Q ss_pred cccCCCCCCCCCCcEEEccCCccccc-----cccccccCCCCCEEECCCCcCcccCCcchh-cCCCCccEEECCCCcccc
Q 041976 537 LLQGPLPVPPSSLRVLLISNNQFTGE-----IIHSICDIIALDVLDLSNNRLNGTIPECIG-NFSPSLSVLDLRNNRLNG 610 (901)
Q Consensus 537 ~l~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~~~L~~L~L~~n~l~~ 610 (901)
....+....+++.+++.++.+... .+..+....+|++|++++|.+. .+|..+. .+. +|++|++++|++++
T Consensus 273 --~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~-~L~~L~Ls~N~l~~ 348 (549)
T 2z81_A 273 --ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK-SLEFLDLSENLMVE 348 (549)
T ss_dssp --TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT-TCCEEECCSSCCCH
T ss_pred --chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc-cccEEEccCCcccc
Confidence 000111233445555554443321 1111222344555555555554 4444432 222 55555555555544
Q ss_pred cCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcc--ccccCCCCCcEEEccCCcCcccCCCCC
Q 041976 611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFP--YWLGNLPELQVLVLRSNKFHGSVREFE 688 (901)
Q Consensus 611 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~~~~~~~~~~ 688 (901)
..|.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.. +|...
T Consensus 349 ~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~ 406 (549)
T 2z81_A 349 EYLKN---------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC 406 (549)
T ss_dssp HHHHH---------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC
T ss_pred ccccc---------------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh
Confidence 33210 1123444444555555554444322 234445555555555555542 22221
Q ss_pred CCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccc
Q 041976 689 PKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSS 768 (901)
Q Consensus 689 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 768 (901)
..+++|++|++++|.+++ +|..+ ++.|++||+++
T Consensus 407 --~~~~~L~~L~Ls~N~l~~-l~~~~-------------------------------------------~~~L~~L~Ls~ 440 (549)
T 2z81_A 407 --QWPEKMRFLNLSSTGIRV-VKTCI-------------------------------------------PQTLEVLDVSN 440 (549)
T ss_dssp --CCCTTCCEEECTTSCCSC-CCTTS-------------------------------------------CTTCSEEECCS
T ss_pred --cccccccEEECCCCCccc-ccchh-------------------------------------------cCCceEEECCC
Confidence 345556666666665542 22110 24567778888
Q ss_pred cccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCC
Q 041976 769 NGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP 848 (901)
Q Consensus 769 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP 848 (901)
|++++.+ ..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..+++|++|++++|++.+..|
T Consensus 441 N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 441 NNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8777653 46889999999999998 5565 4678999999999999999989889999999999999999998877
Q ss_pred C
Q 041976 849 H 849 (901)
Q Consensus 849 ~ 849 (901)
.
T Consensus 515 ~ 515 (549)
T 2z81_A 515 R 515 (549)
T ss_dssp H
T ss_pred c
Confidence 4
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-45 Score=426.48 Aligned_cols=500 Identities=21% Similarity=0.218 Sum_probs=300.2
Q ss_pred cCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCc
Q 041976 108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFP 187 (901)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p 187 (901)
++++|++++|.+++. .+..|.++++|++|+|++|.+.+..|..++++ ++|++|++++|.+++..|
T Consensus 29 ~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l--------------~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--------------SHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTC--------------TTCCEEECTTCCCCEECT
T ss_pred cccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCc--------------hhCCEEeCcCCcCCccCH
Confidence 455555555555543 23345555555555555555544334444444 445555555544444444
Q ss_pred cccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCcc-CCCccccCCC
Q 041976 188 INIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVG-PVPASLGNLT 265 (901)
Q Consensus 188 ~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~ 265 (901)
..++++++|++|++++| .++.+|. .++++++|++|++++|.+.+ .+|..+++++
T Consensus 94 ~~~~~l~~L~~L~L~~n------------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 149 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVET------------------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (570)
T ss_dssp TTTTTCTTCCEEECTTS------------------------CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred hhhcCcccccccccccc------------------------ccccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence 44444444444444444 4444433 57777788888888887775 4677777778
Q ss_pred CCCEEECCCCcCCCCCCccccCCCCC----CEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC-CCCccccCCcCCcE
Q 041976 266 QLTLLHLMHNNFSGHIPSSLSNLVQL----TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVL 340 (901)
Q Consensus 266 ~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 340 (901)
+|++|++++|.+++..+..++.+++| ++|++++|.+.+..+......+|+.|++++|.... .++..+..+++++.
T Consensus 150 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~ 229 (570)
T 2z63_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229 (570)
T ss_dssp TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEE
T ss_pred CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccce
Confidence 88888888777776666677776666 67777777777666654333466666666654321 22333444444444
Q ss_pred EECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCc-cCCCCCchhhhcccccCceecccCcCC
Q 041976 341 IRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNN-RLQGSIPSSIFELVNLTDLQLDSNNFS 419 (901)
Q Consensus 341 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 419 (901)
..+....+.. ...++. +....+.+. ..-.++.++++++ .+.+..|..+..+++|+.|++++|.+.
T Consensus 230 ~~l~~~~~~~--------~~~l~~--~~~~~~~~l----~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 295 (570)
T 2z63_A 230 HRLVLGEFRN--------EGNLEK--FDKSALEGL----CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295 (570)
T ss_dssp EEEEEEECCC--------CSSCEE--CCTTTTGGG----GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC
T ss_pred eeeccccccC--------chhhhh--cchhhhccc----cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch
Confidence 4333221110 000000 000000000 0012334444444 344444555555555555555555555
Q ss_pred CccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhh
Q 041976 420 GIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWI 499 (901)
Q Consensus 420 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~ 499 (901)
+.. ..+..+ +|++|++++|.+ ..+|. ..+++|++|++++|.+.+..+.
T Consensus 296 ~l~--~~~~~~-~L~~L~l~~n~~-------------------------~~l~~--~~l~~L~~L~l~~n~~~~~~~~-- 343 (570)
T 2z63_A 296 RVK--DFSYNF-GWQHLELVNCKF-------------------------GQFPT--LKLKSLKRLTFTSNKGGNAFSE-- 343 (570)
T ss_dssp SCC--BCCSCC-CCSEEEEESCBC-------------------------SSCCB--CBCSSCCEEEEESCBSCCBCCC--
T ss_pred hhh--hhhccC-CccEEeeccCcc-------------------------cccCc--ccccccCEEeCcCCcccccccc--
Confidence 431 233333 444444444444 44433 2344455555555544433332
Q ss_pred hhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECC
Q 041976 500 SEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLS 579 (901)
Q Consensus 500 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 579 (901)
..+++|+.|++++|.++...... .....+++|++|++++|.+.+..+. +..+++|++|+++
T Consensus 344 --~~~~~L~~L~l~~n~l~~~~~~~----------------~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~ 404 (570)
T 2z63_A 344 --VDLPSLEFLDLSRNGLSFKGCCS----------------QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404 (570)
T ss_dssp --CBCTTCCEEECCSSCCBEEEEEE----------------HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred --ccCCCCCEEeCcCCccCcccccc----------------ccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence 22344444444444433221000 0000134566777777777765444 8889999999999
Q ss_pred CCcCcccCC-cchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccc-ccCCccccCCCcccEEeCCCCcCc
Q 041976 580 NNRLNGTIP-ECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG-GAIPQSLVNCTKVEVLDIGNIKIN 657 (901)
Q Consensus 580 ~n~l~~~~p-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~l~~n~l~ 657 (901)
+|.+.+..| ..+..+. +|++|++++|.+.+..|..|..+++|++|++++|+++ +.+|..+..+++|++|++++|+++
T Consensus 405 ~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence 999887666 3455555 9999999999999888889999999999999999997 578889999999999999999999
Q ss_pred cCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHH
Q 041976 658 DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF 714 (901)
Q Consensus 658 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 714 (901)
+..|.++..+++|++|++++|++.+..+... ..+++|+.|++++|++++.+|..+
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cCChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEEecCCcccCCCcchH
Confidence 9889999999999999999999987665543 678999999999999999888543
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-44 Score=420.92 Aligned_cols=488 Identities=21% Similarity=0.235 Sum_probs=338.4
Q ss_pred CcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCC
Q 041976 68 CCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCK 147 (901)
Q Consensus 68 ~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~ 147 (901)
.|.|.|+ |+.. ++.++ .+|+ .+ .++|++|+|++|.+++. .|..++++++|++|+|++|.+.+.
T Consensus 3 ~C~~~~~-c~~~----------~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDGR----------SRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EECT----------TSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EECC----------CCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 4999998 8643 33343 3444 33 37999999999999875 578899999999999999999988
Q ss_pred CCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCc-cC-CCCCCCCCcceeec
Q 041976 148 IPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAG-KF-PANNWTSPIEYLDV 225 (901)
Q Consensus 148 ~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~-~~-~~~~~~~~L~~L~L 225 (901)
.|..++.+ ++|++|++++|.+++..|..++++++|++|++++| .+++ .. +.+..+++|++|++
T Consensus 66 ~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 66 EGDAFYSL--------------GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp CTTTTTTC--------------TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEE
T ss_pred Chhhcccc--------------ccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEEC
Confidence 88889988 99999999999999888888999999999999999 7764 33 34677888888888
Q ss_pred CCCC-CccCC-ccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCcc-ccCCCCCCEEEccCCcCc
Q 041976 226 SETS-FSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS-LSNLVQLTYLDLSSNSFF 302 (901)
Q Consensus 226 s~~~-l~~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~ 302 (901)
++|. +..+| ..++++++|++|++++|.+.+..|..++++++|++|++++|.+. .+|.. +..+++|++|++++|+++
T Consensus 131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccc
Confidence 8887 56665 46788888888888888888777888888888888888888775 33433 356778888888888777
Q ss_pred ccC----CCCCCCCCCCEEECCCCCCCCCCC----ccccCCcCCcEEECcCCcCcccC------ChhhcCCCCCcEEEcc
Q 041976 303 GEI----PDIFNLTQVSFFDLSNNQLAGPIP----SHGSRLQNLVLIRLNNNSFSGTI------PSWLFSLPLLEYVRLS 368 (901)
Q Consensus 303 ~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~ 368 (901)
+.. +....+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+.. ...+..+++|+.|++.
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 642 113346667777777776654332 23345566666666666654321 1123344455555555
Q ss_pred CCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccc
Q 041976 369 DNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNT 448 (901)
Q Consensus 369 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 448 (901)
++.+...... ..++..+....+|+.|++++|.+..+ |...++.+++|++|++++|.+++..+
T Consensus 290 ~~~i~~~~~~-----------------~~l~~~~~~~~~L~~L~l~~n~l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 290 RLHIPQFYLF-----------------YDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp SCBCSCGGGS-----------------CCCCHHHHHSTTCCEEEEESSCCCCC-CHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred ccccchhhhc-----------------ccchhhhhhcccceEEEeccCccccC-CHHHHhcCccccEEEccCCccccccc
Confidence 4443321100 01222334455666667766666544 32344566777777777776654321
Q ss_pred --cccCCCCCCccEEecCCcCCCCCC---hhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccC
Q 041976 449 --FKIDSPFPKFSYLSLSACNISAFP---RFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQI 523 (901)
Q Consensus 449 --~~~~~~~~~L~~L~l~~~~l~~lp---~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~ 523 (901)
......+++|++|++++|+++.++ ..+..+++|++|++++|+++ .+|..+ ..+++|++|++++|.++.++..
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~~~~L~~L~Ls~N~l~~l~~~ 428 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC--QWPEKMRFLNLSSTGIRVVKTC 428 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC--CCCTTCCEEECTTSCCSCCCTT
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh--cccccccEEECCCCCcccccch
Confidence 112235667777777777776654 24667777777777777776 455544 4456666666666666544332
Q ss_pred CCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEEC
Q 041976 524 PWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDL 603 (901)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L 603 (901)
. +++|++|++++|++++.. ..+++|++|++++|+++ .+|. ...+ ++|++|++
T Consensus 429 ~---------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l-~~L~~L~L 480 (549)
T 2z81_A 429 I---------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLF-PVLLVMKI 480 (549)
T ss_dssp S---------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGC-TTCCEEEC
T ss_pred h---------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccC-ccCCEEec
Confidence 2 346677777777776542 46788999999999998 6776 3444 49999999
Q ss_pred CCCcccccCCcCccCCCccCEEEccCCcccccCC
Q 041976 604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP 637 (901)
Q Consensus 604 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 637 (901)
++|++++..|..|..+++|++|++++|++.+..|
T Consensus 481 s~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999888889999999999999999987655
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.2e-42 Score=409.01 Aligned_cols=513 Identities=22% Similarity=0.208 Sum_probs=283.9
Q ss_pred CCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976 218 SPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL 296 (901)
Q Consensus 218 ~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (901)
+++++|||++|.|+.+|. .|.++++|++|+|++|++.+..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 355666666666665543 4566666666666666665554555666666666666666665554555566666666666
Q ss_pred cCCcCcccCCC-CCCCCCCCEEECCCCCCCC-CCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976 297 SSNSFFGEIPD-IFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374 (901)
Q Consensus 297 s~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 374 (901)
++|++++..+. ++++++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+..+..+.+++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~----------- 200 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 200 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh-----------
Confidence 66666554444 5556666666666665543 2445555556666666666665555554444333222
Q ss_pred ccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccc----
Q 041976 375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFK---- 450 (901)
Q Consensus 375 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---- 450 (901)
.....++++.|.++...+.. .....+..+++.+|..........+..+..++...+..+.........
T Consensus 201 -------~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 201 -------LLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp -------TCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred -------hhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 11223444444444322222 222334455555554433333344555555555544332221110000
Q ss_pred -cCCCCCCccEEecCCcCCC----CCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCC-
Q 041976 451 -IDSPFPKFSYLSLSACNIS----AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIP- 524 (901)
Q Consensus 451 -~~~~~~~L~~L~l~~~~l~----~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~- 524 (901)
.......+....+..+... .++..+.....++.+++. ++.+..+....
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------------------------~~~~~~~~~~~~ 326 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV--------------------------SVTIERVKDFSY 326 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE--------------------------SCEEEECGGGGS
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc--------------------------cccccccccccc
Confidence 0001111111111111110 111222333344444444 44433333221
Q ss_pred CCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcc--cCCcchhcCCCCccEEE
Q 041976 525 WKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG--TIPECIGNFSPSLSVLD 602 (901)
Q Consensus 525 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~ 602 (901)
..+++.|++.+|.+.+..+.....++.+++.+|.+... .....+++|+.|++++|.+.. ..+....... +|+.++
T Consensus 327 ~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~ 403 (635)
T 4g8a_A 327 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLD 403 (635)
T ss_dssp CCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS-CCCEEE
T ss_pred chhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhh-hhhhhh
Confidence 23445555555554444444445556666666555432 223356667777777776642 2333344443 666666
Q ss_pred CCCCcccccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCc
Q 041976 603 LRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH 681 (901)
Q Consensus 603 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 681 (901)
+..|.+.. .+..+..+++|+.+++++|......+ ..|..+++++.++++.|.+.+..+..+..+++|++|++++|.+.
T Consensus 404 ~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 404 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp CCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred cccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 66666653 33455666666666666665544333 33555566666666666665555555555555555544444422
Q ss_pred ccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccce
Q 041976 682 GSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVF 761 (901)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 761 (901)
.. ..|..+ ..+++|
T Consensus 483 ~~-------------------------~~~~~~-----------------------------------------~~l~~L 496 (635)
T 4g8a_A 483 EN-------------------------FLPDIF-----------------------------------------TELRNL 496 (635)
T ss_dssp GG-------------------------EECSCC-----------------------------------------TTCTTC
T ss_pred cc-------------------------cCchhh-----------------------------------------hhcccc
Confidence 11 111110 014667
Q ss_pred eEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCC-CCCCeeeCCC
Q 041976 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL-TSLSVLNLSH 840 (901)
Q Consensus 762 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~ 840 (901)
++|||++|++++.+|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++..|+.|..+ ++|++|+|++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 788888888888888889999999999999999999999999999999999999999999999999988 6899999999
Q ss_pred CcCcc
Q 041976 841 NRLDG 845 (901)
Q Consensus 841 N~l~g 845 (901)
|++..
T Consensus 577 Np~~C 581 (635)
T 4g8a_A 577 NDFAC 581 (635)
T ss_dssp CCBCC
T ss_pred CCCcc
Confidence 99975
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=411.28 Aligned_cols=468 Identities=18% Similarity=0.183 Sum_probs=297.6
Q ss_pred ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS 300 (901)
Q Consensus 221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 300 (901)
++||+++|+++.+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..|+++++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 577888888888888776 789999999999888777888899999999999999988888889999999999999998
Q ss_pred CcccCCCCCCCCCCCEEECCCCCCCC-CCCccccCCcCCcEEECcCCcCcccCChhhcCCCCC--cEEEccCCccccccC
Q 041976 301 FFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLL--EYVRLSDNQLSGHID 377 (901)
Q Consensus 301 l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l~~~~~ 377 (901)
++...+ . .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+.+
T Consensus 81 l~~lp~-~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~--- 152 (520)
T 2z7x_B 81 LVKISC-H-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG--- 152 (520)
T ss_dssp CCEEEC-C-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT---
T ss_pred eeecCc-c-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc---
Confidence 885433 3 78888888888888876 467788888888888888888765 345555666 777766666511
Q ss_pred CCCCCCCCEEEccCccCCCCCchhhhccc-ccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCC
Q 041976 378 EFPSKSLQNIYLSNNRLQGSIPSSIFELV-NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456 (901)
Q Consensus 378 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 456 (901)
.+..|..+..+. +...+++++|.+.+..+...+..+++|+.+++++|.......
T Consensus 153 -----------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------- 207 (520)
T 2z7x_B 153 -----------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-------- 207 (520)
T ss_dssp -----------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH--------
T ss_pred -----------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc--------
Confidence 223333333322 122334444444443333334444444444444432000000
Q ss_pred CccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhh-cCCCCccEEEcCCCccCCcccCCCCCCceeeccC
Q 041976 457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE-IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRS 535 (901)
Q Consensus 457 ~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~ 535 (901)
.+......+..+++|+.|++++|.+.+..+..+.. ..
T Consensus 208 ----------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-------------------------------- 245 (520)
T 2z7x_B 208 ----------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW-------------------------------- 245 (520)
T ss_dssp ----------HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--------------------------------
T ss_pred ----------eeecchhhhccccchhhccccccccCHHHHHHHHHHhh--------------------------------
Confidence 00000013444555555555555554322221100 00
Q ss_pred ccccCCCCCCCCCCcEEEccCCcccccccccc-----ccCCCCCEEECCCCcCcccCC-cchhcC--CCCccEEECCCCc
Q 041976 536 NLLQGPLPVPPSSLRVLLISNNQFTGEIIHSI-----CDIIALDVLDLSNNRLNGTIP-ECIGNF--SPSLSVLDLRNNR 607 (901)
Q Consensus 536 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~p-~~~~~~--~~~L~~L~L~~n~ 607 (901)
.++|++|++++|++++.+|..+ ..++.|+.+++++|.+ .+| ..+... .++|+.|++++|.
T Consensus 246 ----------~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 246 ----------HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp ----------TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred ----------hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence 1234445555555555555555 6677777777777777 455 333332 0267788888877
Q ss_pred ccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCcc--CccccccCCCCCcEEEccCCcCcccCC
Q 041976 608 LNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIND--AFPYWLGNLPELQVLVLRSNKFHGSVR 685 (901)
Q Consensus 608 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~ 685 (901)
+.... .+..+++|++|++++|++++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++.+.++
T Consensus 314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred ccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 75432 12567777788888887777777777777777777777777776 445666677777777777666654333
Q ss_pred CCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEE
Q 041976 686 EFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTID 765 (901)
Q Consensus 686 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 765 (901)
.. .+..+++ |++|+
T Consensus 392 ~~-~~~~l~~-----------------------------------------------------------------L~~L~ 405 (520)
T 2z7x_B 392 KG-DCSWTKS-----------------------------------------------------------------LLSLN 405 (520)
T ss_dssp GC-SCCCCTT-----------------------------------------------------------------CCEEE
T ss_pred cc-hhccCcc-----------------------------------------------------------------CCEEE
Confidence 21 1123344 44555
Q ss_pred ccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976 766 FSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845 (901)
Q Consensus 766 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 845 (901)
+++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|++++
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 555555544444432 67888888888888 667777788888888888888885444448888888888998888887
Q ss_pred CCC
Q 041976 846 PIP 848 (901)
Q Consensus 846 ~iP 848 (901)
..|
T Consensus 483 ~c~ 485 (520)
T 2z7x_B 483 SCP 485 (520)
T ss_dssp CHH
T ss_pred cCC
Confidence 544
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-44 Score=426.10 Aligned_cols=362 Identities=20% Similarity=0.285 Sum_probs=220.0
Q ss_pred CcCcccCChhhcCCCCCcEEEccCCccccc-----------------cCCC----CCCCCCEEEccCccCCCCCchhhhc
Q 041976 346 NSFSGTIPSWLFSLPLLEYVRLSDNQLSGH-----------------IDEF----PSKSLQNIYLSNNRLQGSIPSSIFE 404 (901)
Q Consensus 346 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~ 404 (901)
|++++ +|..++++++|++|++++|.+++. +|.. .+++|++|++++|.+.+.+|..+++
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 44444 455555555555555555555542 3322 3556666666666667777778888
Q ss_pred ccccCceecccCc-CCC-ccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCCh--hhccCCC
Q 041976 405 LVNLTDLQLDSNN-FSG-IAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPR--FLRTQDE 480 (901)
Q Consensus 405 l~~L~~L~L~~n~-l~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~ 480 (901)
+++|++|++++|+ +++ ..| ..++.+.. ...+++|++|++++|+++.+|. .+..+++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~~-------------------~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~ 331 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLK-DDWQALAD-------------------APVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHH-HHHHHHHH-------------------SGGGGTCCEEECCSSCCSSCCCHHHHTTCTT
T ss_pred CCCCCEEECcCCCCCccccch-HHHHhhhc-------------------cccCCCCCEEECCCCcCCccCchhhhccCCC
Confidence 8888888888887 776 433 44544410 0012233333333344444555 5666666
Q ss_pred CCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccc
Q 041976 481 LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFT 560 (901)
Q Consensus 481 L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 560 (901)
|++|++++|++.|.+| .
T Consensus 332 L~~L~L~~N~l~g~ip-~-------------------------------------------------------------- 348 (636)
T 4eco_A 332 LGMLECLYNQLEGKLP-A-------------------------------------------------------------- 348 (636)
T ss_dssp CCEEECCSCCCEEECC-C--------------------------------------------------------------
T ss_pred CCEEeCcCCcCccchh-h--------------------------------------------------------------
Confidence 7777766666665555 2
Q ss_pred cccccccccCCCCCEEECCCCcCcccCCcchhcCCCC-ccEEECCCCcccccCCcCccCCC--ccCEEEccCCcccccCC
Q 041976 561 GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPS-LSVLDLRNNRLNGSIPGTFAESN--WLRSLNLNNNELGGAIP 637 (901)
Q Consensus 561 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~ 637 (901)
+..+++|++|++++|.++ .+|..+..+. + |++|++++|.++ .+|..+..++ +|++|++++|++++..|
T Consensus 349 ------~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 349 ------FGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp ------CEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ------hCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 233334444444444444 4444444443 3 444444444444 3344443332 45555555555555555
Q ss_pred cccc-------CCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC------CCCCCCCcEEEcCCC
Q 041976 638 QSLV-------NCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP------KESFPKLRILDLSIN 704 (901)
Q Consensus 638 ~~l~-------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~------~~~l~~L~~L~Ls~n 704 (901)
..+. .+++|++|++++|++....+..+..+++|++|++++|++. .++.... ...+++|+.|++++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 5444 4555666666666655443334445566666666666655 2222111 112337888888888
Q ss_pred ccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCC
Q 041976 705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS 784 (901)
Q Consensus 705 ~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 784 (901)
+++ .+|..+.. ..+++|+.|+|++|++++ +|..+.++++
T Consensus 499 ~l~-~lp~~~~~---------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 499 KLT-KLSDDFRA---------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp CCC-BCCGGGST---------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred cCC-ccChhhhh---------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence 887 56643210 015778889999999987 7888889999
Q ss_pred CCeEeC------CCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976 785 LRLLNL------SHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845 (901)
Q Consensus 785 L~~L~L------s~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 845 (901)
|++|+| ++|++.+.+|..++++++|++|+|++|++ +.+|..+. ++|++|+|++|++..
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 999999 56888999999999999999999999999 67888766 899999999998874
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.8e-43 Score=404.78 Aligned_cols=457 Identities=21% Similarity=0.197 Sum_probs=251.8
Q ss_pred ceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccc
Q 041976 110 QTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPIN 189 (901)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~ 189 (901)
++||+++|.++. +|..+. ++|++|+|++|.+.+..|..+..+ ++|++|++++|.+++..|..
T Consensus 3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~~~ 64 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTSDILSL--------------SKLRILIISHNRIQYLDISV 64 (520)
T ss_dssp CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTC--------------TTCCEEECCSSCCCEEEGGG
T ss_pred ceEecCCCCccc--cccccc--ccccEEECCCCcccccChhhcccc--------------ccccEEecCCCccCCcChHH
Confidence 467777777764 666555 777777777777776555667766 77777777777777777777
Q ss_pred cCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCcc--CCccccCCCCcCEEECCCCCCccCCCccccCCCCC
Q 041976 190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSE--LPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQL 267 (901)
Q Consensus 190 l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 267 (901)
++++++|++|+|++| .++ .+|.. .+++|++|++++|.++. +|..++++++|++|++++|.+.+ ..+..+++|
T Consensus 65 ~~~l~~L~~L~Ls~N-~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L 138 (520)
T 2z7x_B 65 FKFNQELEYLDLSHN-KLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL 138 (520)
T ss_dssp GTTCTTCCEEECCSS-CCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS
T ss_pred hhcccCCCEEecCCC-cee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc
Confidence 777777777777777 555 34433 44555555555555543 34555555555555555555543 234444444
Q ss_pred --CEEECCCCcC--CCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCC-ccccCCcCCcEEE
Q 041976 268 --TLLHLMHNNF--SGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIP-SHGSRLQNLVLIR 342 (901)
Q Consensus 268 --~~L~L~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 342 (901)
++|++++|.+ .+..|..+..+.. ....+++++|.+.+.++ ..+..+++|+.++
T Consensus 139 ~L~~L~l~~n~l~~~~~~~~~l~~l~~----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 139 NISKVLLVLGETYGEKEDPEGLQDFNT----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp CEEEEEEEECTTTTSSCCTTTTTTCCE----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred eeeEEEeeccccccccccccccccccc----------------------ceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 5555555555 4444444443331 12233444444433322 2344555556666
Q ss_pred CcCCc-------CcccCChhhcCCCCCcEEEccCCccccccCC-----CCCCCCCEEEccCccCCCCCchhh-----hcc
Q 041976 343 LNNNS-------FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE-----FPSKSLQNIYLSNNRLQGSIPSSI-----FEL 405 (901)
Q Consensus 343 L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-----~~~~~L~~L~L~~n~l~~~~~~~~-----~~l 405 (901)
+++|. +.+.++ .++.+++|+.|++++|.+.+.... ...++|++|++++|.+++.+|..+ +.+
T Consensus 197 l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l 275 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275 (520)
T ss_dssp EEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred ccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence 55554 444443 466666677777666655532111 123467777777777766666666 667
Q ss_pred cccCceecccCcCCCccchhhhhhc---CCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCC
Q 041976 406 VNLTDLQLDSNNFSGIAEPYMFAKL---IKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELS 482 (901)
Q Consensus 406 ~~L~~L~L~~n~l~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~ 482 (901)
++|+.+++++|.+ .. |...+..+ .+|+.|++++|.+.... ....+++|+
T Consensus 276 ~~L~~l~l~~n~~-~~-p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~~~l~~L~ 327 (520)
T 2z7x_B 276 KALSIHQVVSDVF-GF-PQSYIYEIFSNMNIKNFTVSGTRMVHML--------------------------CPSKISPFL 327 (520)
T ss_dssp CEEEEEEEEECCC-CS-CTHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CCSSCCCCC
T ss_pred ceeEeccccccce-ec-chhhhhcccccCceeEEEcCCCcccccc--------------------------chhhCCccc
Confidence 7777777777776 32 22333333 44555555555443211 012334444
Q ss_pred EEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccc
Q 041976 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE 562 (901)
Q Consensus 483 ~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~ 562 (901)
+|++++|++.+..|
T Consensus 328 ~L~Ls~n~l~~~~~------------------------------------------------------------------ 341 (520)
T 2z7x_B 328 HLDFSNNLLTDTVF------------------------------------------------------------------ 341 (520)
T ss_dssp EEECCSSCCCTTTT------------------------------------------------------------------
T ss_pred EEEeECCccChhhh------------------------------------------------------------------
Confidence 44444444443333
Q ss_pred cccccccCCCCCEEECCCCcCcc--cCCcchhcCCCCccEEECCCCcccccCC-cCccCCCccCEEEccCCcccccCCcc
Q 041976 563 IIHSICDIIALDVLDLSNNRLNG--TIPECIGNFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQS 639 (901)
Q Consensus 563 ~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 639 (901)
..+..+++|++|++++|.+++ .+|..+..+. +|++|++++|++++.+| ..|..+++|++|++++|++++..|..
T Consensus 342 --~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 342 --ENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp --TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred --hhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 333334444444444444442 2233333333 45555555555544222 23455555555666666555555444
Q ss_pred ccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976 640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL 715 (901)
Q Consensus 640 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 715 (901)
+. ++|++|++++|+++ .+|..+..+++|++|++++|++.. ++.. .+..+++|++|++++|++.+..+..++
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHH-HhccCCcccEEECcCCCCcccCCchHH
Confidence 43 45666666666665 445555566666666666666663 2222 235677788888888888777665444
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.2e-41 Score=398.22 Aligned_cols=524 Identities=23% Similarity=0.182 Sum_probs=332.3
Q ss_pred ccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCC
Q 041976 107 LHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNF 186 (901)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~ 186 (901)
+++++|||++|.++.. .+..|.++++|++|+|++|.+++..|..+.++ ++|++|+|++|++++..
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L--------------~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--------------SHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--------------TTCCEEECTTCCCCEEC
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCC--------------CCCCEEEccCCcCCCCC
Confidence 3678888888888763 34568888888888888888775555567777 78888888888777666
Q ss_pred ccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCcc-CCCccccCCC
Q 041976 187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVG-PVPASLGNLT 265 (901)
Q Consensus 187 p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~ 265 (901)
+..|.++++|++|+|++| .+++..+ ..|+++++|++|++++|.+.+ ..|..++.++
T Consensus 117 ~~~f~~L~~L~~L~Ls~N-~l~~l~~----------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVET-NLASLEN----------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp GGGGTTCTTCCEEECTTS-CCCCSTT----------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred HHHhcCCCCCCEEECCCC-cCCCCCh----------------------hhhhcCcccCeeccccCccccCCCchhhccch
Confidence 667777777777777777 5554333 346667777777777776654 3456666777
Q ss_pred CCCEEECCCCcCCCCCCccccCCCCC----CEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC-CCCccccCCcCCcE
Q 041976 266 QLTLLHLMHNNFSGHIPSSLSNLVQL----TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVL 340 (901)
Q Consensus 266 ~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 340 (901)
+|++|++++|++++..+..+..+.++ ..++++.|.+....+.......++.+++.+|.... ..+..+..+..++.
T Consensus 174 ~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~ 253 (635)
T 4g8a_A 174 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 253 (635)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccc
Confidence 77777777777776666666544333 35666777666555554445555666666654432 12233444455544
Q ss_pred EECcCCcC------cccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecc
Q 041976 341 IRLNNNSF------SGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLD 414 (901)
Q Consensus 341 L~L~~n~l------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 414 (901)
..+..+.. .......+.....+....+..+..... ....+..+..+.+++.+.+.
T Consensus 254 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 254 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY-------------------LDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp EEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC-------------------EEECTTTTGGGTTCSEEEEE
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhhccc-------------------ccchhhhhhhhccccccccc
Confidence 44332221 111112222223333333222211100 01122334455566666666
Q ss_pred cCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCccccc
Q 041976 415 SNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQ 494 (901)
Q Consensus 415 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~ 494 (901)
.+.+... ..+.....++.|++.+|.+...... .++.|+.+.+..+.+...+. ...+++|+.+++++|.+...
T Consensus 315 ~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 315 SVTIERV---KDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp SCEEEEC---GGGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEE
T ss_pred ccccccc---cccccchhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcc-cccccccccchhhccccccc
Confidence 6665544 2345556666677666665543321 34566666666666554432 33566777777777766533
Q ss_pred CChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccc-cccccCCCC
Q 041976 495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEII-HSICDIIAL 573 (901)
Q Consensus 495 ~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L 573 (901)
.+.........+++.++++.+.+...... ....++|+.+++.++......+ ..+..++.+
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-------------------~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSN-------------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSC-------------------CTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccchhhhhhhhhhhcccccccccccc-------------------ccccccccchhhhhcccccccccccccccccc
Confidence 22222224556666666666554433221 1123556666666665554333 456678888
Q ss_pred CEEECCCCcCcccCCcchhcCCCCccEEECCCCcc-cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL-NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652 (901)
Q Consensus 574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 652 (901)
+.++++.|.+.+..+..+.... .|+.|++++|.+ .+..|..|..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred ccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 8888888888876666666655 888888888874 44567888888889999999999988888888888999999999
Q ss_pred CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCC-CCCcEEEcCCCccccCCcHHHHHh
Q 041976 653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF-PKLRILDLSINNFSGYLPERFLEN 717 (901)
Q Consensus 653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~~ 717 (901)
+|++++..|..|.++++|++|+|++|++++..+... ..+ ++|++|++++|++.+.....+|..
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~~~~~~~ 590 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSFLQ 590 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence 999888888888888999999999999887776654 445 679999999999988766555443
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.1e-42 Score=408.92 Aligned_cols=361 Identities=20% Similarity=0.278 Sum_probs=208.9
Q ss_pred CCCccCCCccccCCCCCCEEECCCCcCCC-----------------CCCcccc--CCCCCCEEEccCCcCcccCCC-CCC
Q 041976 251 SQFVGPVPASLGNLTQLTLLHLMHNNFSG-----------------HIPSSLS--NLVQLTYLDLSSNSFFGEIPD-IFN 310 (901)
Q Consensus 251 n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~-~~~ 310 (901)
|.+++ +|..++++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|. +.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 44444 55555555555555555555554 2566655 666666666666666666665 666
Q ss_pred CCCCCEEECCCCC-CCC-CCCccccCCc-------CCcEEECcCCcCcccCCh--hhcCCCCCcEEEccCCccccccCCC
Q 041976 311 LTQVSFFDLSNNQ-LAG-PIPSHGSRLQ-------NLVLIRLNNNSFSGTIPS--WLFSLPLLEYVRLSDNQLSGHIDEF 379 (901)
Q Consensus 311 l~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~ 379 (901)
+++|++|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .++.+++|+.|++++|.+. .+|.+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~ 591 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAF 591 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhh
Confidence 6666666666666 665 5665554444 7777777777776 5666 6777777777777777766 44433
Q ss_pred -CCCCCCEEEccCccCCCCCchhhhcccc-cCceecccCcCCCccchhhhhhcC--CCcEEEccCCcccccccccc--C-
Q 041976 380 -PSKSLQNIYLSNNRLQGSIPSSIFELVN-LTDLQLDSNNFSGIAEPYMFAKLI--KLKYLYLSHNSLSLGNTFKI--D- 452 (901)
Q Consensus 380 -~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~--~- 452 (901)
.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++.+ | ..+..++ +|+.|++++|.+.+..+... .
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-P-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-C-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-c-hhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 5667777777777777 67777888887 88888888888754 2 3454443 37788888877765322110 0
Q ss_pred -CCCCCccEEecCCcCCCCCChhh-ccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCce
Q 041976 453 -SPFPKFSYLSLSACNISAFPRFL-RTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGY 530 (901)
Q Consensus 453 -~~~~~L~~L~l~~~~l~~lp~~l-~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~ 530 (901)
...++|+.|++++|.+..+|..+ ..+++|+.|++++|++. .+|..+ +....
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~-------------------------~~~~~- 721 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS-------------------------LKPKD- 721 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS-------------------------SSCTT-
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH-------------------------hcccc-
Confidence 12346666666666666666543 35666666666666665 333322 10000
Q ss_pred eeccCccccCCCCCCCCCCcEEEccCCccccccccccc--cCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCC---
Q 041976 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSIC--DIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN--- 605 (901)
Q Consensus 531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~--- 605 (901)
.....+++|+.|++++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+. +|+.|+|++
T Consensus 722 ----------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 722 ----------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQRD 788 (876)
T ss_dssp ----------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCBC
T ss_pred ----------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCCC
Confidence 00000124555555555555 4455554 66666666666666664 566666554 666666655
Q ss_pred ---CcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCc
Q 041976 606 ---NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAF 660 (901)
Q Consensus 606 ---n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 660 (901)
|++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 444444455555555555555555555 34444332 34455555555444433
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.1e-41 Score=362.61 Aligned_cols=294 Identities=27% Similarity=0.436 Sum_probs=258.5
Q ss_pred CCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCcC--ccceeecCCC--CeEEEEEcCCCCCCC--CCC
Q 041976 25 KHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCS--WDGVTCDMAT--GNVISLDLSCSWLHG--NIP 98 (901)
Q Consensus 25 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~g--~~~ 98 (901)
+.|.++|++||++||+++.++. .+++|..+++||. |.||+|+..+ ++|++|+|+++.+.| .++
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-----------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~ 69 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-----------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-----------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-----------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC
Confidence 3699999999999999996432 5899988889998 9999998655 899999999999999 788
Q ss_pred CCcccccCccCceEeCCC-CCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEc
Q 041976 99 TNTSLFHLLHLQTLNLSH-NDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSL 177 (901)
Q Consensus 99 ~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~L 177 (901)
+ .+.++++|++|++++ |.+.+. +|..++++++|++|+|++|.+.+.+|..++.+ ++|++|++
T Consensus 70 ~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--------------~~L~~L~L 132 (313)
T 1ogq_A 70 S--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--------------KTLVTLDF 132 (313)
T ss_dssp G--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGC--------------TTCCEEEC
T ss_pred h--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCC--------------CCCCEEeC
Confidence 7 899999999999995 888876 88899999999999999999998999999888 99999999
Q ss_pred CCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCC-CcCEEECCCCCCccC
Q 041976 178 SDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLK-LLGRLMLGYSQFVGP 256 (901)
Q Consensus 178 s~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~-~L~~L~L~~n~~~~~ 256 (901)
++|.+.+.+|..++.+++|++|++++| .+++.+| ..++.++ +|++|++++|.+.+.
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p----------------------~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGN-RISGAIP----------------------DSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECC----------------------GGGGCCCTTCCEEECCSSEEEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCC-cccCcCC----------------------HHHhhhhhcCcEEECcCCeeecc
Confidence 999999999999999999999999988 7777666 7788887 889999999998888
Q ss_pred CCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCc
Q 041976 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQ 336 (901)
Q Consensus 257 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 336 (901)
+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.++.+..+++|++|++++|.+++.+|.++..++
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 888888887 9999999999988888888999999999999999887777777888899999999988888888888888
Q ss_pred CCcEEECcCCcCcccCChhhcCCCCCcEEEccCCc
Q 041976 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQ 371 (901)
Q Consensus 337 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 371 (901)
+|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 8888999888888888875 778888888888886
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.7e-40 Score=385.37 Aligned_cols=470 Identities=17% Similarity=0.188 Sum_probs=279.8
Q ss_pred CCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976 217 TSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL 296 (901)
Q Consensus 217 ~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (901)
+...+++++++++++.+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3345888888888888887665 78888888888888777778888888888888888888777888888888888888
Q ss_pred cCCcCcccCCCCCCCCCCCEEECCCCCCCC-CCCccccCCcCCcEEECcCCcCcccCChhhcCCCCC--cEEEccCCccc
Q 041976 297 SSNSFFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLL--EYVRLSDNQLS 373 (901)
Q Consensus 297 s~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l~ 373 (901)
++|.++...+ . .+++|++|++++|++++ ..|..++++++|++|++++|.+++.. +..+++| ++|++++|.+.
T Consensus 108 s~N~l~~lp~-~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 108 SHNRLQNISC-C-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TTSCCCEECS-C-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred CCCcCCccCc-c-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccc
Confidence 8888774333 3 67777777777777765 34567777777777777777766432 3333333 66666655551
Q ss_pred cccCCCCCCCCCEEEccCccCCCCCchhhhccc-ccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccC
Q 041976 374 GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELV-NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID 452 (901)
Q Consensus 374 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 452 (901)
. ++..|..+..+. ..-.++++.|.+.+..+...+..+++|+.+++++|......
T Consensus 183 ~--------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~----- 237 (562)
T 3a79_B 183 I--------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR----- 237 (562)
T ss_dssp C--------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH-----
T ss_pred c--------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch-----
Confidence 0 333344443322 11133555555555444344455555555555554311000
Q ss_pred CCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhh-hcCCCCccEEEcCCCccCCcccCCCCCCcee
Q 041976 453 SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWIS-EIGKDSLSYVNLSHNFITKMKQIPWKNLGYL 531 (901)
Q Consensus 453 ~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~-~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L 531 (901)
+......+..++.|+.++++++.+.+.....+. ...
T Consensus 238 ---------------l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~---------------------------- 274 (562)
T 3a79_B 238 ---------------LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW---------------------------- 274 (562)
T ss_dssp ---------------HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT----------------------------
T ss_pred ---------------HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh----------------------------
Confidence 000112234445555555544443321111100 000
Q ss_pred eccCccccCCCCCCCCCCcEEEccCCcccccccccc-----ccCCCCCEEECCCCcCcccCCc-chhcC--CCCccEEEC
Q 041976 532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSI-----CDIIALDVLDLSNNRLNGTIPE-CIGNF--SPSLSVLDL 603 (901)
Q Consensus 532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~p~-~~~~~--~~~L~~L~L 603 (901)
..+|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+|. .+... .++|++|++
T Consensus 275 --------------~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 275 --------------PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp --------------TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred --------------cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 0133444444444444444433 3444444555555554 3331 11111 025777777
Q ss_pred CCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccC--ccccccCCCCCcEEEccCCcCc
Q 041976 604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDA--FPYWLGNLPELQVLVLRSNKFH 681 (901)
Q Consensus 604 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~ 681 (901)
++|.+.... ....+++|++|++++|++++..|..+.++++|++|++++|++++. .|..+.++++|++|++++|++.
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 777664321 125566677777777777766666667777777777777766653 2344556666666666666555
Q ss_pred ccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccce
Q 041976 682 GSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVF 761 (901)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 761 (901)
+.++... +..+ ++|
T Consensus 417 ~~~~~~~-~~~l-----------------------------------------------------------------~~L 430 (562)
T 3a79_B 417 SHAYDRT-CAWA-----------------------------------------------------------------ESI 430 (562)
T ss_dssp SCCSSCC-CCCC-----------------------------------------------------------------TTC
T ss_pred CccChhh-hcCc-----------------------------------------------------------------ccC
Confidence 4232211 1233 445
Q ss_pred eEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCC
Q 041976 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN 841 (901)
Q Consensus 762 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 841 (901)
++|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 5555555555555444432 68899999999998 56666669999999999999999544444889999999999999
Q ss_pred cCccCCC
Q 041976 842 RLDGPIP 848 (901)
Q Consensus 842 ~l~g~iP 848 (901)
++.+..|
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9998665
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-39 Score=380.20 Aligned_cols=463 Identities=23% Similarity=0.200 Sum_probs=328.0
Q ss_pred CCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCC-ccccCCCCcCEEECCCCCCccCCCccccCCCCCCEE
Q 041976 192 HLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLL 270 (901)
Q Consensus 192 ~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 270 (901)
.+...+++++++| .+++ +|.. ..++|++|++++|.++.++ ..++++++|++|++++|.+.+..|..|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~-~L~~-ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNR-NLTH-VPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTS-CCCS-CCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCC-CCcc-CCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3455699999999 8875 6642 2389999999999999887 589999999999999999999889999999999999
Q ss_pred ECCCCcCCCCCCccccCCCCCCEEEccCCcCcccC-CC-CCCCCCCCEEECCCCCCCCCCCccccCCcCC--cEEECcCC
Q 041976 271 HLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI-PD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL--VLIRLNNN 346 (901)
Q Consensus 271 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n 346 (901)
++++|.++ .+|.. .+++|++|++++|++.+.. |. +.++++|++|++++|.+.+. .+..+++| ++|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 99999998 56665 8999999999999999743 44 88999999999999999864 45555555 99999999
Q ss_pred cC--cccCChhhcCCCC-CcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCc-----C
Q 041976 347 SF--SGTIPSWLFSLPL-LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNN-----F 418 (901)
Q Consensus 347 ~l--~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l 418 (901)
.+ ++..|..+..+.. .-.+++++|.+.+.++.. .+..+++|+.+++++|. +
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~---------------------~~~~l~~L~~L~l~~n~~~~~~l 238 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM---------------------SVNALGHLQLSNIKLNDENCQRL 238 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE---------------------EESSEEEEEEEEEECCSTTHHHH
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhh---------------------cccccceEEEecccccccccchH
Confidence 99 8888887776551 114456666655433322 22334444444444442 1
Q ss_pred CCccchhhhhhcCCCcEEEccCCccccccccccC--CCCCCccEEecCCcCCC-CCChhh-----ccCCCCCEEeCCCCc
Q 041976 419 SGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID--SPFPKFSYLSLSACNIS-AFPRFL-----RTQDELSYLDLSENK 490 (901)
Q Consensus 419 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~L~~L~l~~~~l~-~lp~~l-----~~~~~L~~L~ls~n~ 490 (901)
.+. ...+..+++|+.+++.++.+.+....... ...++|++|++++|.+. .+|..+ ..++.|+.+++..+.
T Consensus 239 ~~~--~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 239 MTF--LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp HHH--HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred HHH--HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 111 12345555566565555544321111000 01124444444444443 344433 333444444444444
Q ss_pred ccccCCh-hhhh-cCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCC-CCCCCCcEEEccCCcccccccccc
Q 041976 491 IDGQIPS-WISE-IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP-VPPSSLRVLLISNNQFTGEIIHSI 567 (901)
Q Consensus 491 l~~~~p~-~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~ 567 (901)
+ .+|. ++.. ... .++++|++++|.+..... ..+++|++|++++|.+++..|..+
T Consensus 317 ~--~~p~~~~~~~~~~---------------------~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 317 F--LFSKEALYSVFAE---------------------MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp C--SSCHHHHHHHHHT---------------------CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred e--ecChhhhhhhhcc---------------------CcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhh
Confidence 3 2331 1100 011 235555555555544332 456889999999999998889999
Q ss_pred ccCCCCCEEECCCCcCcc--cCCcchhcCCCCccEEECCCCcccccCC-cCccCCCccCEEEccCCcccccCCccccCCC
Q 041976 568 CDIIALDVLDLSNNRLNG--TIPECIGNFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQSLVNCT 644 (901)
Q Consensus 568 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 644 (901)
..+++|++|++++|++++ .+|..+..+. +|++|++++|++++.+| ..|..+++|++|++++|++++..|..+. +
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred cccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 999999999999999985 3345566766 99999999999998444 5688999999999999999987777664 7
Q ss_pred cccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976 645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL 715 (901)
Q Consensus 645 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 715 (901)
+|++|++++|+++. +|..+..+++|++|++++|++++ ++.. .+..+++|+.|++++|++.+..+..++
T Consensus 451 ~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp TCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred cCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 99999999999984 66666699999999999999985 4433 347889999999999999998876554
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.1e-39 Score=363.41 Aligned_cols=429 Identities=24% Similarity=0.326 Sum_probs=186.4
Q ss_pred cccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcC
Q 041976 103 LFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL 182 (901)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~ 182 (901)
-...++|++|++++|.+ +. +|+.++++++|++|++++|.+.|.+|..++.+ ++|+++++..|..
T Consensus 7 ~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l--------------~~L~~l~l~~c~~ 70 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ--------------REMAVSRLRDCLD 70 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCC--------------HHHHHHHHHHHHH
T ss_pred ccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccc--------------hhcchhhhhhhhc
Confidence 34567888888888888 43 88888888888888888888888888888877 6666666655532
Q ss_pred CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976 183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262 (901)
Q Consensus 183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 262 (901)
.++++|++++| .+++ +|. ..++|++|++++|.++.+|+. +++|++|++++|.+.+ +|..
T Consensus 71 -----------~~l~~L~l~~~-~l~~-lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~-- 129 (454)
T 1jl5_A 71 -----------RQAHELELNNL-GLSS-LPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL-- 129 (454)
T ss_dssp -----------HTCSEEECTTS-CCSC-CCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC--
T ss_pred -----------cCCCEEEecCC-cccc-CCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC--
Confidence 34566666666 4443 222 124555555555555555542 2456666666665553 2211
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEE
Q 041976 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342 (901)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 342 (901)
.++|++|++++|.+++ +| .++++++|++|++++|++++ +|..+ .+|++|+
T Consensus 130 -~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~------------------------lp~~~---~~L~~L~ 179 (454)
T 1jl5_A 130 -PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK------------------------LPDLP---PSLEFIA 179 (454)
T ss_dssp -CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC------------------------CCCCC---TTCCEEE
T ss_pred -CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc------------------------cCCCc---ccccEEE
Confidence 1455555555555553 44 35555555555555555543 22221 2444555
Q ss_pred CcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCcc
Q 041976 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA 422 (901)
Q Consensus 343 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 422 (901)
+++|.+++ +| .++.+++|++|++++|++.+... . .++|++|++++|.++ .+| .++.+++|++|++++|++++..
T Consensus 180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-~-~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-L-PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-C-CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-C-cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc
Confidence 55554443 23 34455555555555555443211 1 135666666666655 444 3566666666666666666542
Q ss_pred chhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhc
Q 041976 423 EPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502 (901)
Q Consensus 423 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~ 502 (901)
. ..++|++|++++|.++ .+|.. .++|++|++++|++++. |.
T Consensus 254 ~-----~~~~L~~L~l~~N~l~-------------------------~l~~~---~~~L~~L~ls~N~l~~l-~~----- 294 (454)
T 1jl5_A 254 D-----LPPSLEALNVRDNYLT-------------------------DLPEL---PQSLTFLDVSENIFSGL-SE----- 294 (454)
T ss_dssp S-----CCTTCCEEECCSSCCS-------------------------CCCCC---CTTCCEEECCSSCCSEE-SC-----
T ss_pred c-----cccccCEEECCCCccc-------------------------ccCcc---cCcCCEEECcCCccCcc-cC-----
Confidence 1 1245555555555444 33321 13444555555544431 10
Q ss_pred CCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCc
Q 041976 503 GKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNR 582 (901)
Q Consensus 503 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 582 (901)
..++|+.|++++|.++++... .++|++|++++|++.+ +|..+++|++|++++|++++ +|. .+++|++|++++|+
T Consensus 295 ~~~~L~~L~l~~N~l~~i~~~-~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLCDL-PPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCTTCCEEECCSSCCSEECCC-CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred cCCcCCEEECcCCcCCcccCC-cCcCCEEECCCCcccc-ccccCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCC
Confidence 013455555555555443321 1355666666666554 34445677777777777774 343 35677788888887
Q ss_pred Ccc--cCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccc--cCCccccCCCcccEEeCCCCcCcc
Q 041976 583 LNG--TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG--AIPQSLVNCTKVEVLDIGNIKIND 658 (901)
Q Consensus 583 l~~--~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~n~l~~ 658 (901)
+++ .+|..+ ..| +.|.+.+.+|.. +++|++|++++|++++ .+|. +++.|.+.+|.+.+
T Consensus 369 l~~l~~ip~~l-------~~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 369 LREFPDIPESV-------EDL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVD 430 (454)
T ss_dssp CSSCCCCCTTC-------CEE--ECCC-----------------------------------------------------
T ss_pred CCcCCCChHHH-------Hhh--hhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCC
Confidence 775 444433 222 235555555542 4778899999999886 5553 45667788888888
Q ss_pred CccccccCC
Q 041976 659 AFPYWLGNL 667 (901)
Q Consensus 659 ~~~~~l~~l 667 (901)
..+.+....
T Consensus 431 ~~~~~~~~~ 439 (454)
T 1jl5_A 431 PYEFAHETT 439 (454)
T ss_dssp ---------
T ss_pred ccccCHHHh
Confidence 777665544
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.2e-38 Score=353.76 Aligned_cols=300 Identities=23% Similarity=0.292 Sum_probs=171.7
Q ss_pred CeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCccccccccccc
Q 041976 81 GNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTV 160 (901)
Q Consensus 81 ~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~ 160 (901)
.++++++++++.+ |.+|+ +++++++|++|++++|.+.+. +|..++++++|+++++++|..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~--~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~---------------- 70 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV--EAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLD---------------- 70 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHH----------------
T ss_pred ccchhhhcccCch-hhCCh--hHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhc----------------
Confidence 5789999999999 89998 899999999999999999887 999999999886665555431
Q ss_pred chhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCC
Q 041976 161 VLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNL 240 (901)
Q Consensus 161 ~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l 240 (901)
.++++|++++|.+++ +|.. .++|++|++++| .+++ +|. ..++|++|++++|.++.+|...
T Consensus 71 ---------~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n-~l~~-lp~--~~~~L~~L~l~~n~l~~l~~~~--- 130 (454)
T 1jl5_A 71 ---------RQAHELELNNLGLSS-LPEL---PPHLESLVASCN-SLTE-LPE--LPQSLKSLLVDNNNLKALSDLP--- 130 (454)
T ss_dssp ---------HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSS-CCSS-CCC--CCTTCCEEECCSSCCSCCCSCC---
T ss_pred ---------cCCCEEEecCCcccc-CCCC---cCCCCEEEccCC-cCCc-ccc--ccCCCcEEECCCCccCcccCCC---
Confidence 345666666665554 2221 245666666666 5554 442 2356666666666666554321
Q ss_pred CCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECC
Q 041976 241 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLS 320 (901)
Q Consensus 241 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~ 320 (901)
++|++|++++|.+.+ +| +++++++|++|++++|.+++ +|..+ .+|++|++++|++++ +|.+.++++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence 567777777777764 55 46777777777777777664 44432 367777777777765 4456677777777777
Q ss_pred CCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCch
Q 041976 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPS 400 (901)
Q Consensus 321 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 400 (901)
+|.+++ +|... ++|++|++++|.++ .+|. ++.+++|++|++++|++.+... ..++|+.|++++|.+++ +|.
T Consensus 204 ~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~-l~~ 274 (454)
T 1jl5_A 204 NNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD-LPE 274 (454)
T ss_dssp SSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSC-CCC
T ss_pred CCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccc-cCc
Confidence 777664 33322 46777777777776 4553 6677777777777777664222 23566666666666654 332
Q ss_pred hhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccc
Q 041976 401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444 (901)
Q Consensus 401 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 444 (901)
. .++|+.|++++|.+++... -.++|++|++++|.++
T Consensus 275 ~---~~~L~~L~ls~N~l~~l~~-----~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 275 L---PQSLTFLDVSENIFSGLSE-----LPPNLYYLNASSNEIR 310 (454)
T ss_dssp C---CTTCCEEECCSSCCSEESC-----CCTTCCEEECCSSCCS
T ss_pred c---cCcCCEEECcCCccCcccC-----cCCcCCEEECcCCcCC
Confidence 2 2456666666666655311 0134555555555444
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-36 Score=346.44 Aligned_cols=381 Identities=20% Similarity=0.233 Sum_probs=220.6
Q ss_pred ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCC-CccccCCCCCCEEEccCC
Q 041976 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHI-PSSLSNLVQLTYLDLSSN 299 (901)
Q Consensus 221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n 299 (901)
+.++.++++++.+|. +. ++|++|++++|.+.+..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 345566666666665 22 56777777777776666666777777777777777665433 445666777777777777
Q ss_pred cCcccCCC-CCCCCCCCEEECCCCCCCCCCCcc--ccCCcCCcEEECcCCcCcccCChh-hcCCCCCcEEEccCCccccc
Q 041976 300 SFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSH--GSRLQNLVLIRLNNNSFSGTIPSW-LFSLPLLEYVRLSDNQLSGH 375 (901)
Q Consensus 300 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~ 375 (901)
.+++..|. +.++++|++|++++|.+++..+.. ++.+++|++|++++|.+++..|.. +..+++|++|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 76666554 666677777777777666544333 666677777777777766665554 56666666666666666554
Q ss_pred cCCC----CCCCCCEEEccCccCCCCCchhh--------hcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcc
Q 041976 376 IDEF----PSKSLQNIYLSNNRLQGSIPSSI--------FELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443 (901)
Q Consensus 376 ~~~~----~~~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 443 (901)
.+.. ...+++.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+...
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~------------- 235 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA-KRFFDA------------- 235 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH-HHHHHH-------------
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch-hhhhcc-------------
Confidence 4332 12345555555555543322221 123344444444444443322 112111
Q ss_pred ccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccC
Q 041976 444 SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQI 523 (901)
Q Consensus 444 ~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~ 523 (901)
...++|+.|++++|...+.... .+.+
T Consensus 236 --------------------------------~~~~~L~~L~l~~~~~~~~~~~----------------~~~~------ 261 (455)
T 3v47_A 236 --------------------------------IAGTKIQSLILSNSYNMGSSFG----------------HTNF------ 261 (455)
T ss_dssp --------------------------------TTTCCEEEEECTTCTTTSCCTT----------------CCSS------
T ss_pred --------------------------------ccccceeeEeeccccccccccc----------------hhhh------
Confidence 0113344444444433221000 0000
Q ss_pred CCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccc--cCCCCCEEECCCCcCcccCCcchhcCCCCccEE
Q 041976 524 PWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSIC--DIIALDVLDLSNNRLNGTIPECIGNFSPSLSVL 601 (901)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 601 (901)
.+..+..+. ..++|++|++++|.+.+..|..+..+. +|++|
T Consensus 262 ------------------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L 304 (455)
T 3v47_A 262 ------------------------------------KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQL 304 (455)
T ss_dssp ------------------------------------CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEE
T ss_pred ------------------------------------ccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEE
Confidence 000000111 124566666666666655555555554 66666
Q ss_pred ECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCc
Q 041976 602 DLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH 681 (901)
Q Consensus 602 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 681 (901)
++++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|.++..+++|++|++++|++.
T Consensus 305 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 66666666666666666677777777777776666666777777777777777777666767777777777777777776
Q ss_pred ccCCCCCCCCCCCCCcEEEcCCCccccCCc
Q 041976 682 GSVREFEPKESFPKLRILDLSINNFSGYLP 711 (901)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 711 (901)
+..+.. +..+++|++|++++|++++.+|
T Consensus 385 ~~~~~~--~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 385 SVPDGI--FDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCTTT--TTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCHhH--hccCCcccEEEccCCCcccCCC
Confidence 544332 2567777888888888887777
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.3e-36 Score=341.39 Aligned_cols=389 Identities=19% Similarity=0.215 Sum_probs=270.5
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC--CCCCCCCCEEECCC
Q 041976 244 GRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVSFFDLSN 321 (901)
Q Consensus 244 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~l~~ 321 (901)
+.++.+++.++ .+|. +. ++|++|++++|.+++..|..|+++++|++|++++|.+.+.++. +.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666665 4554 22 6788888888888877777888888888888888877654433 67777788888887
Q ss_pred CCCCCCCCccccCCcCCcEEECcCCcCcccCChh--hcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCc
Q 041976 322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW--LFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIP 399 (901)
Q Consensus 322 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 399 (901)
|.+++..|..++++++|++|++++|.+++..+.. +..+++|++|++++|.+.+ ..|
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------~~~ 146 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK----------------------IQP 146 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS----------------------CCC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc----------------------cCc
Confidence 7777666777777777777777777776644433 6666666666666665554 333
Q ss_pred hh-hhcccccCceecccCcCCCccchhhhhhc--CCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhc
Q 041976 400 SS-IFELVNLTDLQLDSNNFSGIAEPYMFAKL--IKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLR 476 (901)
Q Consensus 400 ~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~ 476 (901)
.. +..+++|++|++++|.+++..+ ..+..+ .+|+.|++++|.+.......+.. .....+.
T Consensus 147 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~ 209 (455)
T 3v47_A 147 ASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPF 209 (455)
T ss_dssp CGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTT
T ss_pred ccccCCCCcccEEeCCCCcccccCh-hhhhccccccccccccccCcccccchhhccc----------------ccccccc
Confidence 33 5556666666666666655543 333333 34455555555443222111000 0001133
Q ss_pred cCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccC
Q 041976 477 TQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISN 556 (901)
Q Consensus 477 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 556 (901)
.+++|++|++++|++.+..|..+..... ..+++.|++++
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~-----------------------------------------~~~L~~L~l~~ 248 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIA-----------------------------------------GTKIQSLILSN 248 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTT-----------------------------------------TCCEEEEECTT
T ss_pred ccceeeeEecCCCcccccchhhhhcccc-----------------------------------------ccceeeEeecc
Confidence 4567888899998888877776632110 12344455555
Q ss_pred CccccccccccccCCCCCEEECCCCcCcccCCcchhcC-CCCccEEECCCCcccccCCcCccCCCccCEEEccCCccccc
Q 041976 557 NQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNF-SPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGA 635 (901)
Q Consensus 557 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 635 (901)
|.+.+.. +..+.+.+..+..+..+ .++|++|++++|.+++..|..|..+++|++|++++|++++.
T Consensus 249 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 5443321 11222222222222222 14899999999999999999999999999999999999999
Q ss_pred CCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976 636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL 715 (901)
Q Consensus 636 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 715 (901)
.|..|.++++|++|++++|++.+..|..+..+++|++|++++|++.+..+... ..+++|++|++++|++++ +|...+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~-~~~~~~ 391 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF--LGLPNLKELALDTNQLKS-VPDGIF 391 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSC-CCTTTT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc--cccccccEEECCCCcccc-CCHhHh
Confidence 99999999999999999999999999999999999999999999988766554 779999999999999996 555567
Q ss_pred HhhHhhhcccccCCcccc
Q 041976 716 ENLNAMRNVSADEGKLRY 733 (901)
Q Consensus 716 ~~l~~L~~l~l~~~~~~~ 733 (901)
..+++|+.+++++|.+..
T Consensus 392 ~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred ccCCcccEEEccCCCccc
Confidence 889999999999998754
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.7e-36 Score=336.12 Aligned_cols=267 Identities=19% Similarity=0.222 Sum_probs=204.2
Q ss_pred ccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc
Q 041976 102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI 181 (901)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~ 181 (901)
.+.++++|++|++++|.+++ +| .++.+++|++|+|++|.+++ +| ++.+ ++|++|++++|.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l--------------~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQN--------------TNLTYLACDSNK 96 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTC--------------TTCSEEECCSSC
T ss_pred ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccC--------------CCCCEEECcCCC
Confidence 67788999999999999887 45 68899999999999999886 44 7777 899999999998
Q ss_pred CCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccc
Q 041976 182 LQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261 (901)
Q Consensus 182 ~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l 261 (901)
+++. + ++++++|++|++++| .+++ +| +..+++|++|++++|.++.++ ++.+++|++|++++|...+.+ .+
T Consensus 97 l~~~-~--~~~l~~L~~L~L~~N-~l~~-l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 97 LTNL-D--VTPLTKLTYLNCDTN-KLTK-LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp CSCC-C--CTTCTTCCEEECCSS-CCSC-CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CC
T ss_pred Ccee-e--cCCCCcCCEEECCCC-cCCe-ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--cc
Confidence 8874 3 888899999999998 7776 34 677888888888888888774 778888888888888665555 47
Q ss_pred cCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEE
Q 041976 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI 341 (901)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 341 (901)
+.+++|++|++++|.+++ +| ++.+++|++|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|++|
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 778888888888888875 34 77788888888888888765 37777888888888888876 45 7777888888
Q ss_pred ECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCc
Q 041976 342 RLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI 421 (901)
Q Consensus 342 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 421 (901)
++++|.+++.. ++.+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQT------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTC------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCC------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence 88888887643 445677777777664 34566677776666555 35667777777777765554
Q ss_pred cc
Q 041976 422 AE 423 (901)
Q Consensus 422 ~~ 423 (901)
.+
T Consensus 302 l~ 303 (457)
T 3bz5_A 302 LD 303 (457)
T ss_dssp EE
T ss_pred ec
Confidence 33
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.8e-36 Score=339.42 Aligned_cols=361 Identities=20% Similarity=0.196 Sum_probs=216.4
Q ss_pred cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCC
Q 041976 236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVS 315 (901)
Q Consensus 236 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~ 315 (901)
.++++++|++|++++|.+.+. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + +.++++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-cCCCCcCC
Confidence 455666666666666666643 3 466666666666666666643 2 56666666666666666653 2 55666666
Q ss_pred EEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCC
Q 041976 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQ 395 (901)
Q Consensus 316 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~ 395 (901)
+|++++|++++ ++ ++.+++|++|++++|.+++. + ++.+++|++|++++|...+.++
T Consensus 110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~------------------ 165 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD------------------ 165 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC------------------
T ss_pred EEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc------------------
Confidence 66666666654 22 55566666666666665542 1 4555555555555554333332
Q ss_pred CCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhh
Q 041976 396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFL 475 (901)
Q Consensus 396 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l 475 (901)
+..+++|+.|++++|+++++. +..+++|++|++++|.++... ...+++|++|++++|+++.+| +
T Consensus 166 ------~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip--~ 229 (457)
T 3bz5_A 166 ------VTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID--V 229 (457)
T ss_dssp ------CTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ------cccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC--c
Confidence 334444555555555444431 344444555555554444321 113344444444444444444 4
Q ss_pred ccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEcc
Q 041976 476 RTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLIS 555 (901)
Q Consensus 476 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 555 (901)
..+++|+.|++++|++++ ++...+++|+.|+++.| +|+.|+++
T Consensus 230 ~~l~~L~~L~l~~N~l~~--------------------------~~~~~l~~L~~L~l~~n-----------~L~~L~l~ 272 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTE--------------------------LDVSTLSKLTTLHCIQT-----------DLLEIDLT 272 (457)
T ss_dssp TTCTTCSEEECCSSCCSC--------------------------CCCTTCTTCCEEECTTC-----------CCSCCCCT
T ss_pred cccCCCCEEEeeCCcCCC--------------------------cCHHHCCCCCEEeccCC-----------CCCEEECC
Confidence 445555555555555544 33333344444444433 34556667
Q ss_pred CCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccccc
Q 041976 556 NNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGA 635 (901)
Q Consensus 556 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 635 (901)
+|.+.+.+| +..+++|+.|++++|...+.+|.. . ++|+.|++++| ++|++|++++|++++.
T Consensus 273 ~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~-~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 273 HNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---A-AGITELDLSQN-------------PKLVYLYLNNTELTEL 333 (457)
T ss_dssp TCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---T-CCCSCCCCTTC-------------TTCCEEECTTCCCSCC
T ss_pred CCccCCccc--ccccccCCEEECCCCcccceeccC---C-CcceEechhhc-------------ccCCEEECCCCccccc
Confidence 777666665 456788888888888877776642 2 25666665554 5788899999998874
Q ss_pred CCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976 636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL 715 (901)
Q Consensus 636 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 715 (901)
.+..+++|++|++++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..++
T Consensus 334 ---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 334 ---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHh
Confidence 38888899999999998876 35667777888888765 2345678889999999999997664
Q ss_pred Hh
Q 041976 716 EN 717 (901)
Q Consensus 716 ~~ 717 (901)
..
T Consensus 396 ~~ 397 (457)
T 3bz5_A 396 DQ 397 (457)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-33 Score=319.73 Aligned_cols=349 Identities=26% Similarity=0.316 Sum_probs=215.9
Q ss_pred ccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976 104 FHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ 183 (901)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~ 183 (901)
..++++++|+++++.+.. +|. +..+++|++|+|++|.+.+. |. ++.+ ++|++|++++|.+.
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l--------------~~L~~L~l~~n~l~ 103 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDI-TP-LKNL--------------TKLVDILMNNNQIA 103 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTC--------------TTCCEEECCSSCCC
T ss_pred hHhccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCc-hh-hhcc--------------ccCCEEECCCCccc
Confidence 346677777777777655 443 66777777777777777643 32 6666 77777777777776
Q ss_pred CCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccC
Q 041976 184 GNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGN 263 (901)
Q Consensus 184 ~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 263 (901)
+..+ ++++++|++|++++| .+.+. +.+..+++|++|++++|.+..++ .++.+++|++|+++ +.+.+. ..+.+
T Consensus 104 ~~~~--~~~l~~L~~L~L~~n-~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~ 175 (466)
T 1o6v_A 104 DITP--LANLTNLTGLTLFNN-QITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDL--KPLAN 175 (466)
T ss_dssp CCGG--GTTCTTCCEEECCSS-CCCCC-GGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCC--GGGTT
T ss_pred cChh--hcCCCCCCEEECCCC-CCCCC-hHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCc--hhhcc
Confidence 5544 777777777777777 55543 23566667777777777766664 36777777777775 334332 23667
Q ss_pred CCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEEC
Q 041976 264 LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRL 343 (901)
Q Consensus 264 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 343 (901)
+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 77777777777776643 236677777777777777765444 55667777777777776642 34666677777777
Q ss_pred cCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccc
Q 041976 344 NNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE 423 (901)
Q Consensus 344 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 423 (901)
++|.+++..+ +..+++|++|++++|.+.+..+...+++|+.|++++|++++..+ +..+++|+.|++++|++++..+
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 7777665433 66666666666666666654443355566666666666554322 5556666666666666655532
Q ss_pred hhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcC
Q 041976 424 PYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG 503 (901)
Q Consensus 424 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 503 (901)
+..+++|++|++++|.++ .+ ..+..+++|++|++++|++.+..| + ..
T Consensus 327 ---~~~l~~L~~L~l~~n~l~-------------------------~~-~~l~~l~~L~~L~l~~n~l~~~~~--~--~~ 373 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNNKVS-------------------------DV-SSLANLTNINWLSAGHNQISDLTP--L--AN 373 (466)
T ss_dssp ---GGGCTTCCEEECCSSCCC-------------------------CC-GGGTTCTTCCEEECCSSCCCBCGG--G--TT
T ss_pred ---hccCccCCEeECCCCccC-------------------------Cc-hhhccCCCCCEEeCCCCccCccch--h--hc
Confidence 445555555555555544 33 234455556666666666655444 2 44
Q ss_pred CCCccEEEcCCCccCCcc
Q 041976 504 KDSLSYVNLSHNFITKMK 521 (901)
Q Consensus 504 ~~~L~~L~ls~n~l~~~~ 521 (901)
+++|+.|++++|.+++.+
T Consensus 374 l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 374 LTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CTTCCEEECCCEEEECCC
T ss_pred CCCCCEEeccCCcccCCc
Confidence 556666666666665543
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.4e-33 Score=318.34 Aligned_cols=146 Identities=24% Similarity=0.359 Sum_probs=71.7
Q ss_pred CCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEEC
Q 041976 193 LPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL 272 (901)
Q Consensus 193 l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 272 (901)
+++++.|+++++ .+. .+|.+..+++|++|++++|.++.+|. ++.+++|++|++++|.+.+..+ ++++++|++|++
T Consensus 45 l~~l~~L~l~~~-~i~-~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIK-SIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSS-CCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred hccccEEecCCC-CCc-cCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 456666666666 433 24444455555555555555555544 5555555555555555553322 555555555555
Q ss_pred CCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCc
Q 041976 273 MHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS 349 (901)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 349 (901)
++|.+++..+ +..+++|++|++++|.+.+ ++.+..+++|++|+++ +.+.+.. .++.+++|++|++++|.++
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 5555543321 4555555555555555443 2234444555555543 2222111 1444444444444444443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=328.40 Aligned_cols=347 Identities=19% Similarity=0.189 Sum_probs=263.7
Q ss_pred cEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccc
Q 041976 459 SYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLL 538 (901)
Q Consensus 459 ~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l 538 (901)
+.++.++++++.+|..+ .+.++.|++++|++.+..+..| ..+++|++|++++|.++.+....|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~----------- 78 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEF--ASFPHLEELELNENIVSAVEPGAFNN----------- 78 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTTTTT-----------
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHc--cCCCCCCEEECCCCccCEeChhhhhC-----------
Confidence 35566666666666543 2467777777777776666666 45566666666666665554433322
Q ss_pred cCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccC
Q 041976 539 QGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE 618 (901)
Q Consensus 539 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 618 (901)
+++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+. +|++|++++|.+++..+..|..
T Consensus 79 -------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 79 -------LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp -------CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTT
T ss_pred -------CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccC
Confidence 35677777777777766666778888899999999988877777777776 8999999999988888888889
Q ss_pred CCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcE
Q 041976 619 SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRI 698 (901)
Q Consensus 619 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 698 (901)
+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.++... ....+|+.
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~ 228 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTS 228 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccE
Confidence 9999999999999887777778889999999999999988888888889999999999988877666544 33458999
Q ss_pred EEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchh
Q 041976 699 LDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQV 778 (901)
Q Consensus 699 L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 778 (901)
|++++|.+++ +|...+. .+++|+.|+|++|.+++..+..
T Consensus 229 L~l~~n~l~~-~~~~~~~----------------------------------------~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 229 LSITHCNLTA-VPYLAVR----------------------------------------HLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp EEEESSCCCS-CCHHHHT----------------------------------------TCTTCCEEECCSSCCCEECTTS
T ss_pred EECcCCcccc-cCHHHhc----------------------------------------CccccCeeECCCCcCCccChhh
Confidence 9999998874 4533322 1567889999999999888888
Q ss_pred hhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCccc
Q 041976 779 IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQE 858 (901)
Q Consensus 779 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~ 858 (901)
|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++.+.-+....+.....
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~ 347 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR 347 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTS
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhc
Confidence 99999999999999999999899999999999999999999988888889999999999999998864321111111222
Q ss_pred ccccCCcCCCCCC
Q 041976 859 DSYIGNLGLCGFP 871 (901)
Q Consensus 859 ~~~~~n~~lcg~~ 871 (901)
..+.++...|+.|
T Consensus 348 ~~~~~~~~~C~~p 360 (477)
T 2id5_A 348 LNFNRQQPTCATP 360 (477)
T ss_dssp SCCTTCCCBEEES
T ss_pred cccCccCceeCCc
Confidence 3445555566443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-32 Score=304.33 Aligned_cols=351 Identities=18% Similarity=0.183 Sum_probs=272.9
Q ss_pred cCCCCCCCCCCcC-ccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCcc-ccCCCCCc
Q 041976 58 KMISWKKDTNCCS-WDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLT 135 (901)
Q Consensus 58 ~l~~w~~~~~~c~-w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~ 135 (901)
.+++|..+.+||. |.+..|....-+| ........... .-..++++++|+++++.+.. +|.. +..+++|+
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~ 72 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE 72 (390)
T ss_dssp -----CCEECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCS
T ss_pred CcCCCCCccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhh--CChhHhcccccCc
Confidence 4678998888875 6666564222222 22111111111 33467899999999999877 5654 78999999
Q ss_pred eeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCC-C
Q 041976 136 HFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPA-N 214 (901)
Q Consensus 136 ~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~-~ 214 (901)
+|+|++|.+.+..|..++.+ ++|++|++++|.+.+..|..++++++|++|++++| .++...+. +
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l--------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 137 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYA--------------HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF 137 (390)
T ss_dssp EEECTTSCCCEECTTTTTTC--------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred EEECCCCcccccChhhccCC--------------CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHh
Confidence 99999999987777788888 99999999999999988889999999999999999 77744443 4
Q ss_pred CCCCCcceeecCCCCCccCC-ccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCE
Q 041976 215 NWTSPIEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTY 293 (901)
Q Consensus 215 ~~~~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 293 (901)
..+++|++|++++|.+..++ ..++.+++|++|++++|.+.+. .+..+++|++|++++|.+++ +....+|++
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~ 209 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEE 209 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSE
T ss_pred cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceE
Confidence 78899999999999999775 4688999999999999998864 36678899999999998774 344568999
Q ss_pred EEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976 294 LDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373 (901)
Q Consensus 294 L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 373 (901)
|++++|.+...... ..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 210 L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 210 LDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp EECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred EECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 99999998865433 347899999999999853 67889999999999999999888999999999999999999988
Q ss_pred cccCCC-CCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcccccccc
Q 041976 374 GHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTF 449 (901)
Q Consensus 374 ~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 449 (901)
+..... .+++|+.|++++|+++ .+|..+..+++|+.|++++|.++... +..+++|++|++++|++......
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHH
T ss_pred ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC----chhhccCCEEEcCCCCccchhHH
Confidence 765444 6788999999999887 56777888888999999998887762 56778888888888887754433
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=314.54 Aligned_cols=319 Identities=20% Similarity=0.174 Sum_probs=258.9
Q ss_pred EEEcCCCccCCcccCCCCCCceeeccCccccCCCC---CCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcc
Q 041976 509 YVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP---VPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG 585 (901)
Q Consensus 509 ~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 585 (901)
.++.+++.++.++....++++.|++++|.+.+..+ ..+++|++|++++|.+++..|..|.++++|++|++++|.+++
T Consensus 15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 34444444554444444455555555555554433 235788999999999998888899999999999999999985
Q ss_pred cCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcccccc
Q 041976 586 TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG 665 (901)
Q Consensus 586 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 665 (901)
..+..+..+. +|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+.
T Consensus 95 ~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 95 IPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp CCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred cCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 4444566665 999999999999988889999999999999999999988888999999999999999999988888899
Q ss_pred CCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEE
Q 041976 666 NLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVV 745 (901)
Q Consensus 666 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~ 745 (901)
.+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+.+|...+.
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------- 222 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYS--FKRLYRLKVLEISHWPYLDTMTPNCLY----------------------------- 222 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTC--SCSCTTCCEEEEECCTTCCEECTTTTT-----------------------------
T ss_pred ccCCCcEEeCCCCcCcEeChhh--cccCcccceeeCCCCccccccCccccc-----------------------------
Confidence 9999999999999988765543 377899999999999887666543211
Q ss_pred eecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCc
Q 041976 746 TLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPK 825 (901)
Q Consensus 746 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~ 825 (901)
..+|++|++++|++++..+..+.++++|++|+|++|.+++..+..|..+++|+.|+|++|++++..|.
T Consensus 223 ------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 223 ------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp ------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred ------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 24789999999999977778899999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCeeeCCCCcCccCCCCC-CCCCCcccccccCCcCCCCCC
Q 041976 826 PLTSLTSLSVLNLSHNRLDGPIPHG-PQFNTFQEDSYIGNLGLCGFP 871 (901)
Q Consensus 826 ~l~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~ 871 (901)
.|..+++|++|+|++|++++..|.. ..+..+....+.+|+..|+++
T Consensus 291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9999999999999999999754432 234455666677777766543
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-33 Score=301.94 Aligned_cols=257 Identities=30% Similarity=0.510 Sum_probs=179.1
Q ss_pred CCEEECCCCcCcc--cCCcchhcCCCCccEEECCC-CcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEE
Q 041976 573 LDVLDLSNNRLNG--TIPECIGNFSPSLSVLDLRN-NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVL 649 (901)
Q Consensus 573 L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 649 (901)
+++|++++|.+.+ .+|..+..+. +|++|++++ |.+.+.+|..|..+++|++|++++|++++.+|..|.++++|++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4444444444444 4444444443 444444442 44444444445555555555555555554555555555555555
Q ss_pred eCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCC-CCcEEEcCCCccccCCcHHHHHhhHhhhcccccC
Q 041976 650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP-KLRILDLSINNFSGYLPERFLENLNAMRNVSADE 728 (901)
Q Consensus 650 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~ 728 (901)
++++|++.+.+|..+..+++|++|++++|++.+.++... ..++ +|++|++++|++++.+|..+.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~~------------- 195 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTFA------------- 195 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGGG-------------
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHHh-------------
Confidence 555555555555555555555555555555554444332 3344 667777777777766665431
Q ss_pred CcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCC
Q 041976 729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK 808 (901)
Q Consensus 729 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~ 808 (901)
.+. |++|++++|.+++.+|..|+++++|++|+|++|++++.+|. +..+++
T Consensus 196 ----------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~ 245 (313)
T 1ogq_A 196 ----------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245 (313)
T ss_dssp ----------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTT
T ss_pred ----------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCC
Confidence 023 78899999999989999999999999999999999987776 888999
Q ss_pred CCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccccccCCcCCCCCCCCCCC
Q 041976 809 LESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKC 876 (901)
Q Consensus 809 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~l~~~c 876 (901)
|++|+|++|++++.+|..+..+++|++|+|++|+++|.+|...++..+....+.+|+.+||.|+. .|
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999999999999999999999999999999888889999999999999998875 56
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-31 Score=314.42 Aligned_cols=346 Identities=19% Similarity=0.218 Sum_probs=277.9
Q ss_pred cCCCCCCCCCCcC----ccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCc-cccCCC
Q 041976 58 KMISWKKDTNCCS----WDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISS-GFSRFR 132 (901)
Q Consensus 58 ~l~~w~~~~~~c~----w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~ 132 (901)
.+++|..+.+||. |.++.|+. + ++-........+ .-..+.+++.+++++|.+.. +|. .+++++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~--lp~~~~~~l~ 75 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRK--LPAALLDSFR 75 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC---E---ECSSCCCCEESC----SSGGGCCCSEEEESSCEESE--ECTHHHHHCC
T ss_pred cccCCCCCCcCcccCcCceeEecCc---e---ecccccccccCc----ccccCCCceEEEeeCCCCCC--cCHHHHccCC
Confidence 6889998888874 55555441 1 111111111111 23457899999999999877 554 478899
Q ss_pred CCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCC
Q 041976 133 NLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFP 212 (901)
Q Consensus 133 ~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~ 212 (901)
+|++|+|++|.+.+..|..++.+ ++|++|+|++|.+++..|..++++++|++|+|++| .+++..+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l--------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~ 140 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYA--------------HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR 140 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTC--------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCcEEECCCCCCCCCChHHhcCC--------------CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCH
Confidence 99999999999998778888888 99999999999999988888999999999999999 7776555
Q ss_pred C-CCCCCCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCC
Q 041976 213 A-NNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQ 290 (901)
Q Consensus 213 ~-~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 290 (901)
. +..+++|++|++++|.+..++. .++.+++|++|++++|.+.+. .++.+++|+.|++++|.+++ +....+
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~ 212 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIA 212 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTT
T ss_pred HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCch
Confidence 4 4789999999999999997754 689999999999999998864 35668899999999998874 345578
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCC
Q 041976 291 LTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN 370 (901)
Q Consensus 291 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 370 (901)
|++|++++|.+....+.+ .++|+.|++++|.+++ +..+..+++|++|++++|.+++..|..++.+++|+.|++++|
T Consensus 213 L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 213 VEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp CSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred hheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 999999999988655443 2689999999999986 477889999999999999999998999999999999999999
Q ss_pred ccccccCCC-CCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcccccc
Q 041976 371 QLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGN 447 (901)
Q Consensus 371 ~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 447 (901)
.+++..... .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|++....
T Consensus 289 ~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 289 RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCCCChh
Confidence 998765544 5788999999999988 57778888899999999999888762 567788888888888876544
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.3e-33 Score=298.68 Aligned_cols=277 Identities=21% Similarity=0.279 Sum_probs=155.6
Q ss_pred CCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCC----CCCCCCcCccceeecC--------CCCeEEEEEcCCCC
Q 041976 25 KHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISW----KKDTNCCSWDGVTCDM--------ATGNVISLDLSCSW 92 (901)
Q Consensus 25 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w----~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~ 92 (901)
..+..+|++||++||+++..++.+ .+++| ....++|.|.|+.|+. ..++|+.|+|+++.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~---------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~ 92 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNR---------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP 92 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTT---------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred cccCchHHHHHHHHHHhccCCchh---------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCC
Confidence 446678999999999998655432 56788 4467899999999952 22456666666666
Q ss_pred CCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCc
Q 041976 93 LHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSL 172 (901)
Q Consensus 93 ~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L 172 (901)
+. .+++ .++.+++|++|+|++|.++. +|..++++++|++|+|++|.+. .+|..++.+ ++|
T Consensus 93 l~-~lp~--~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l--------------~~L 152 (328)
T 4fcg_A 93 LP-QFPD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASL--------------NRL 152 (328)
T ss_dssp CS-SCCS--CGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGC--------------TTC
T ss_pred ch-hcCh--hhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcC--------------cCC
Confidence 55 4444 45556666666666666552 5555566666666666666555 555555555 555
Q ss_pred cEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCC
Q 041976 173 TSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQ 252 (901)
Q Consensus 173 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~ 252 (901)
++|++++|.+.+.+|..++. .++.+ .+..+++|++|++++|.++.+|..++++++|++|++++|.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~------~~~~~---------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAS------TDASG---------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEE------EC-CC---------CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred CEEECCCCCCccccChhHhh------ccchh---------hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence 55555555555555543322 00000 0122444555555555555555555555555555555555
Q ss_pred CccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCcc
Q 041976 253 FVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSH 331 (901)
Q Consensus 253 ~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 331 (901)
+.+ +|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.+|..
T Consensus 218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 553 444455555555555555555555555555555555555555555444443 444455555555555544445555
Q ss_pred ccCCcCCcEEECcCC
Q 041976 332 GSRLQNLVLIRLNNN 346 (901)
Q Consensus 332 ~~~l~~L~~L~L~~n 346 (901)
++++++|+.+++..+
T Consensus 297 l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 297 IAQLPANCIILVPPH 311 (328)
T ss_dssp GGGSCTTCEEECCGG
T ss_pred HhhccCceEEeCCHH
Confidence 555555554444433
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.4e-30 Score=285.08 Aligned_cols=306 Identities=22% Similarity=0.270 Sum_probs=175.1
Q ss_pred cccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcC
Q 041976 103 LFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL 182 (901)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~ 182 (901)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ +|. +..+ ++|++|++++|.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l--------------~~L~~L~L~~n~i 100 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNL--------------VKLTNLYIGTNKI 100 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTC--------------TTCCEEECCSSCC
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcC--------------CcCCEEEccCCcc
Confidence 4456666666666666654 33 25666666666666666553 232 4555 6666666666665
Q ss_pred CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976 183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262 (901)
Q Consensus 183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 262 (901)
++. ..+..+++|++|++++| .+.+. +.+..+++|++|++++|.....+..+..+++|++|++++|.+.+..+ +.
T Consensus 101 ~~~--~~~~~l~~L~~L~l~~n-~i~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 174 (347)
T 4fmz_A 101 TDI--SALQNLTNLRELYLNED-NISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IA 174 (347)
T ss_dssp CCC--GGGTTCTTCSEEECTTS-CCCCC-GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred cCc--hHHcCCCcCCEEECcCC-cccCc-hhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hc
Confidence 542 24556666666666666 44332 22445555555555555433333446666666666666666554322 55
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEE
Q 041976 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342 (901)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 342 (901)
.+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred cCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence 66666666666666653322 5566666666666666654433 5556666666666666654322 56666666666
Q ss_pred CcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCcc
Q 041976 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA 422 (901)
Q Consensus 343 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 422 (901)
+++|.+++. ..+..+++|++|++++|.+.+......+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 666666542 345666666666666666655422224556666666666666666666666666666666666666653
Q ss_pred chhhhhhcCCCcEEEccCCcc
Q 041976 423 EPYMFAKLIKLKYLYLSHNSL 443 (901)
Q Consensus 423 ~~~~l~~l~~L~~L~L~~n~l 443 (901)
+ +..+++|++|++++|.+
T Consensus 328 ~---~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 328 P---LASLSKMDSADFANQVI 345 (347)
T ss_dssp G---GGGCTTCSEESSSCC--
T ss_pred C---hhhhhccceeehhhhcc
Confidence 3 55566666666666554
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.2e-30 Score=282.19 Aligned_cols=308 Identities=21% Similarity=0.327 Sum_probs=210.4
Q ss_pred cccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCC
Q 041976 127 GFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPS 206 (901)
Q Consensus 127 ~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~ 206 (901)
.+..+++|++|+++++.+. .+| .+..+ ++|++|++++|.+++..+ +..+++|++|++++| .
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~--------------~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~ 99 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQ-GIEYL--------------TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-K 99 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCT-TGGGC--------------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred cchhcccccEEEEeCCccc-cch-hhhhc--------------CCccEEEccCCccccchh--hhcCCcCCEEEccCC-c
Confidence 3567889999999999886 344 36666 899999999998886543 888899999999988 6
Q ss_pred CCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCcccc
Q 041976 207 LAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLS 286 (901)
Q Consensus 207 l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 286 (901)
++. ++.+..+++|++|++++|.+..++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +.
T Consensus 100 i~~-~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~ 174 (347)
T 4fmz_A 100 ITD-ISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IA 174 (347)
T ss_dssp CCC-CGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred ccC-chHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hc
Confidence 654 4567777888888888888887765 7778888888888876554443 37777888888888887764433 67
Q ss_pred CCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEE
Q 041976 287 NLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVR 366 (901)
Q Consensus 287 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 366 (901)
.+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred cCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence 77788888888877765433 6677777777777777765433 6677777777777777764433 66777777777
Q ss_pred ccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccc
Q 041976 367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLG 446 (901)
Q Consensus 367 L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 446 (901)
+++|.+.+......+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++
T Consensus 250 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l--- 323 (347)
T 4fmz_A 250 IGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHI--- 323 (347)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSC---
T ss_pred CCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCcc---
Confidence 7777666542223556666666666666543 345566666666666666655433 4455555555555555554
Q ss_pred cccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCccc
Q 041976 447 NTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKID 492 (901)
Q Consensus 447 ~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~ 492 (901)
+.++. +..+++|++|++++|.++
T Consensus 324 ----------------------~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 ----------------------TDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ----------------------CCCGG-GGGCTTCSEESSSCC---
T ss_pred ----------------------ccccC-hhhhhccceeehhhhccc
Confidence 44433 566777777777777664
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-30 Score=306.71 Aligned_cols=333 Identities=22% Similarity=0.242 Sum_probs=211.5
Q ss_pred CCccEEecCCcCCCCCCh-hhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeecc
Q 041976 456 PKFSYLSLSACNISAFPR-FLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLR 534 (901)
Q Consensus 456 ~~L~~L~l~~~~l~~lp~-~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 534 (901)
++++.+++++|.+..+|. .+..+++|++|++++|.+.+..|..+ ..+++|+.|++++|.+++++...|.+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~------- 121 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPPHVFQN------- 121 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCTTTTTT-------
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh--cCCCCCCEEECCCCcCCCCCHHHHcC-------
Confidence 445555555555555554 45667777777777777776666555 44555555555555555444332211
Q ss_pred CccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCc
Q 041976 535 SNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG 614 (901)
Q Consensus 535 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~ 614 (901)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+. +|++|++++|.+++..
T Consensus 122 -----------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 122 -----------VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECTTSCCSBCC--
T ss_pred -----------CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-cCcEEECcCCCCCCcC--
Confidence 23455555555555544444455566666666666666555555555544 6666666666655432
Q ss_pred CccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCC
Q 041976 615 TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694 (901)
Q Consensus 615 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 694 (901)
+..+++|+.|++++|.+++ +...++|++|++++|.+....+.. .++|++|++++|.+.+. ..+..++
T Consensus 188 -~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~----~~l~~l~ 254 (597)
T 3oja_B 188 -LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT----AWLLNYP 254 (597)
T ss_dssp -GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC----GGGGGCT
T ss_pred -hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC----hhhccCC
Confidence 3445556666666665553 223345666666666655433221 24566666666666542 1234566
Q ss_pred CCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccc
Q 041976 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE 774 (901)
Q Consensus 695 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 774 (901)
+|+.|++++|.+.+..|..+ ..+++|+.|+|++|.+++
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~-----------------------------------------~~l~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPF-----------------------------------------VKMQRLERLYISNNRLVA- 292 (597)
T ss_dssp TCSEEECCSSCCCEEESGGG-----------------------------------------TTCSSCCEEECTTSCCCE-
T ss_pred CCCEEECCCCccCCCCHHHh-----------------------------------------cCccCCCEEECCCCCCCC-
Confidence 66666666666665544322 115778899999999986
Q ss_pred cchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCC
Q 041976 775 ISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFN 854 (901)
Q Consensus 775 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~ 854 (901)
+|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++.. +..+++|++|+|++|++.+..+ ...+.
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~ 367 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFR 367 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTT
T ss_pred CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHH
Confidence 5666788999999999999999 57778899999999999999998763 6678899999999999987532 22456
Q ss_pred CcccccccCCcCCCCCC
Q 041976 855 TFQEDSYIGNLGLCGFP 871 (901)
Q Consensus 855 ~~~~~~~~~n~~lcg~~ 871 (901)
.+....+.++...|+.+
T Consensus 368 ~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 368 NVARPAVDDADQHCKID 384 (597)
T ss_dssp TCCTTTBCCCCCCCCTT
T ss_pred HHhhhccccccccCCcc
Confidence 66777788999999764
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=7e-30 Score=284.14 Aligned_cols=289 Identities=20% Similarity=0.161 Sum_probs=180.2
Q ss_pred CCCcceeecCCCCCccCCcc-ccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEE
Q 041976 217 TSPIEYLDVSETSFSELPDS-IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLD 295 (901)
Q Consensus 217 ~~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 295 (901)
++++++|+++++.+..+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34556666666666666554 46667777777777776665555666777777777777777666666667777777777
Q ss_pred ccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976 296 LSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374 (901)
Q Consensus 296 Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 374 (901)
+++|.++...+. +.++++|++|++++|.+.+..+..++.+++|++|++++|.+++. .+..+++|+.|++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 777776654444 45667777777777777666666667777777777777776643 24456667777777766654
Q ss_pred ccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCC
Q 041976 375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454 (901)
Q Consensus 375 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 454 (901)
.. ..++|+.|++++|.++.. |. ...++|+.|++++|.+++. ..+..+++|++|++++|.++...... ...
T Consensus 201 ~~---~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~ 270 (390)
T 3o6n_A 201 LA---IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHP-FVK 270 (390)
T ss_dssp EE---CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGG-GTT
T ss_pred cC---CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhH-ccc
Confidence 32 224567777777766533 22 1235677777777776654 35666677777777777666543322 234
Q ss_pred CCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcc
Q 041976 455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMK 521 (901)
Q Consensus 455 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~ 521 (901)
+++|++|++++|+++.+|..+..+++|++|++++|++. .+|..+ ..+++|+.|++++|.++.++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~--~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH--HHHTTCSEEECCSSCCCCCC
T ss_pred cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc--cccCcCCEEECCCCccceeC
Confidence 56666666666666666655566666777777777666 334434 33455666666666555544
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=6.8e-32 Score=308.02 Aligned_cols=388 Identities=20% Similarity=0.148 Sum_probs=234.6
Q ss_pred CCCCEEEccCccCCCCCch-hhhcccccCceecccCcCCCcc---chhhhhhcCCCcEEEccCCccccccccccCCCCC-
Q 041976 382 KSLQNIYLSNNRLQGSIPS-SIFELVNLTDLQLDSNNFSGIA---EPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP- 456 (901)
Q Consensus 382 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~- 456 (901)
++|++|++++|.++..... .+..+++|++|++++|.+++.. -+..+..+++|++|++++|.+.......+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3456666666666543322 2667777888888887776431 1245666778888888887776543333322333
Q ss_pred ---CccEEecCCcCCC-----CCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCC
Q 041976 457 ---KFSYLSLSACNIS-----AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNL 528 (901)
Q Consensus 457 ---~L~~L~l~~~~l~-----~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L 528 (901)
+|++|++++|+++ .++..+..+++|++|++++|.+.+..+..+...-.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~------------------------ 138 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL------------------------ 138 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT------------------------
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh------------------------
Confidence 5777777777765 34566777778888888888776554444321100
Q ss_pred ceeeccCccccCCCCCCCCCCcEEEccCCccccc----cccccccCCCCCEEECCCCcCcccCCcchhc----CCCCccE
Q 041976 529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE----IIHSICDIIALDVLDLSNNRLNGTIPECIGN----FSPSLSV 600 (901)
Q Consensus 529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~----~~~~L~~ 600 (901)
...++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. ..++|++
T Consensus 139 ---------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~ 203 (461)
T 1z7x_W 139 ---------------DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203 (461)
T ss_dssp ---------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCE
T ss_pred ---------------cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceE
Confidence 0012455555555555543 2444556677777777777776543333322 1237777
Q ss_pred EECCCCccccc----CCcCccCCCccCEEEccCCcccccC-----CccccCCCcccEEeCCCCcCccC----ccccccCC
Q 041976 601 LDLRNNRLNGS----IPGTFAESNWLRSLNLNNNELGGAI-----PQSLVNCTKVEVLDIGNIKINDA----FPYWLGNL 667 (901)
Q Consensus 601 L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l 667 (901)
|++++|.+++. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|++++. ++..+..+
T Consensus 204 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 77777777653 3455666777778888877776432 22233567778888888777664 45556667
Q ss_pred CCCcEEEccCCcCcccCCCCCC---CCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeE
Q 041976 668 PELQVLVLRSNKFHGSVREFEP---KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVV 744 (901)
Q Consensus 668 ~~L~~L~L~~n~~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~ 744 (901)
++|++|++++|.+.+..+.... ....++|++|++++|.+++.....+...
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------------- 336 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV--------------------------- 336 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH---------------------------
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH---------------------------
Confidence 7777888877776432111100 1223578888888887765422221111
Q ss_pred EeecchhHHHhhhccceeEEEccccccccccchhhhc-----cCCCCeEeCCCCcCCC----CCCccccCCCCCCEEeCC
Q 041976 745 VTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGK-----LHSLRLLNLSHNHFTG----QIPSSLGNLAKLESLDLS 815 (901)
Q Consensus 745 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls 815 (901)
...+++|++|++++|.+++..+..+.. .++|++|+|++|.+++ .+|..+..+++|++|||+
T Consensus 337 ----------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 337 ----------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp ----------HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred ----------HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 112467788888888887665555543 5688888888888875 667777788888888888
Q ss_pred CCccCCCCCcCC-----cCCCCCCeeeCCCCcCcc
Q 041976 816 SNNVAGKIPKPL-----TSLTSLSVLNLSHNRLDG 845 (901)
Q Consensus 816 ~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g 845 (901)
+|++++.....+ .....|+.|++.++.+..
T Consensus 407 ~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp SSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 888875421111 123356666666665543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=7e-28 Score=261.41 Aligned_cols=199 Identities=21% Similarity=0.267 Sum_probs=110.3
Q ss_pred CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCc-cccCCCCcCEEEC
Q 041976 170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLML 248 (901)
Q Consensus 170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L 248 (901)
++|++|++++|.+++..|..++++++|++|++++| .++ .+|.. ..++|++|++++|.+..++. .+.++++|++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLK-ELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCS-BCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCC-ccChh-hcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 44444444444444444444444555555555554 333 22211 11344555555555554433 4666677777777
Q ss_pred CCCCCcc--CCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCC
Q 041976 249 GYSQFVG--PVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLA 325 (901)
Q Consensus 249 ~~n~~~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~ 325 (901)
++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++|++++|.+++..+. +..+++|++|++++|.++
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 7776642 455566666666666666666653 343332 5666666666666655444 556666666666666666
Q ss_pred CCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccc
Q 041976 326 GPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGH 375 (901)
Q Consensus 326 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 375 (901)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++.
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 555555666666666666666665 4555556666666666666655543
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6.4e-28 Score=261.87 Aligned_cols=283 Identities=21% Similarity=0.260 Sum_probs=180.9
Q ss_pred cCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCc
Q 041976 108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFP 187 (901)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p 187 (901)
++++++++++.++. +|..+. ++|++|+|++|.+.+..|..++.+ ++|++|++++|.+++..|
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l--------------~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGL--------------QHLYALVLVNNKISKIHE 95 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTC--------------TTCCEEECCSSCCCEECG
T ss_pred cCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCC--------------CCCcEEECCCCccCccCH
Confidence 34444444444442 444332 456666666666654445555555 666666666666666666
Q ss_pred cccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCc--cCCCccccCC
Q 041976 188 INIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFV--GPVPASLGNL 264 (901)
Q Consensus 188 ~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~--~~~p~~l~~l 264 (901)
..++++++|++|++++| .++ .+|.... ++|++|++++|.+..+|. .+..+++|++|++++|.+. +..+..+..+
T Consensus 96 ~~~~~l~~L~~L~L~~n-~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKN-HLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GGSTTCTTCCEEECCSS-CCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred hHhhCcCCCCEEECCCC-cCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 66666666666666666 444 3332111 567777777777776654 4777888888888888875 3566667766
Q ss_pred CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEEC
Q 041976 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRL 343 (901)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 343 (901)
+|++|++++|.+++ +|..+. ++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 173 -~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 173 -KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp -CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred -ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence 78888888888774 554443 6788888888888776655 777888888888888887776777788888888888
Q ss_pred cCCcCcccCChhhcCCCCCcEEEccCCccccccCCC--------CCCCCCEEEccCccCC--CCCchhhhcccccCceec
Q 041976 344 NNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--------PSKSLQNIYLSNNRLQ--GSIPSSIFELVNLTDLQL 413 (901)
Q Consensus 344 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L 413 (901)
++|.++ .+|..+..+++|++|++++|.+++..+.. ....|+.|++++|.+. +..|..|..+++|+.+++
T Consensus 249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 888877 66767777888888888888776544332 1234555555555544 334444444555555555
Q ss_pred ccC
Q 041976 414 DSN 416 (901)
Q Consensus 414 ~~n 416 (901)
++|
T Consensus 328 ~~n 330 (332)
T 2ft3_A 328 GNY 330 (332)
T ss_dssp ---
T ss_pred ccc
Confidence 444
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.1e-28 Score=264.22 Aligned_cols=265 Identities=18% Similarity=0.207 Sum_probs=199.0
Q ss_pred ceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcc
Q 041976 529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL 608 (901)
Q Consensus 529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 608 (901)
+.++++++.+.......++.+++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+. +|++|++++|++
T Consensus 34 ~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 112 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQL 112 (330)
T ss_dssp TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCC
T ss_pred eEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCEEECCCCcC
Confidence 3444444444333333346677778888888777777788888888888888888876677777776 888888888888
Q ss_pred cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCcc--CccccccCCCCCcEEEccCCcCcccCCC
Q 041976 609 NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIND--AFPYWLGNLPELQVLVLRSNKFHGSVRE 686 (901)
Q Consensus 609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 686 (901)
+. +|..+. ++|++|++++|++++..+..|.++++|++|++++|++.. ..+..+.++++|++|++++|.+... +.
T Consensus 113 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~ 188 (330)
T 1xku_A 113 KE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQ 188 (330)
T ss_dssp SB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CS
T ss_pred Cc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Cc
Confidence 74 444443 678888888888887777778888888888888888853 6677788888888888888887643 22
Q ss_pred CCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEc
Q 041976 687 FEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDF 766 (901)
Q Consensus 687 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 766 (901)
. ..++|++|++++|.+++..|..+ . .+++|++|++
T Consensus 189 ~----~~~~L~~L~l~~n~l~~~~~~~~-~----------------------------------------~l~~L~~L~L 223 (330)
T 1xku_A 189 G----LPPSLTELHLDGNKITKVDAASL-K----------------------------------------GLNNLAKLGL 223 (330)
T ss_dssp S----CCTTCSEEECTTSCCCEECTGGG-T----------------------------------------TCTTCCEEEC
T ss_pred c----ccccCCEEECCCCcCCccCHHHh-c----------------------------------------CCCCCCEEEC
Confidence 2 23788899999988876555332 1 1467788888
Q ss_pred cccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCC------CCCCeeeCCC
Q 041976 767 SSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL------TSLSVLNLSH 840 (901)
Q Consensus 767 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~ 840 (901)
++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|... ++|+.+++++
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 888888877778888888888888888888 667778888888888888888888777777543 6788888888
Q ss_pred CcCc
Q 041976 841 NRLD 844 (901)
Q Consensus 841 N~l~ 844 (901)
|++.
T Consensus 303 N~~~ 306 (330)
T 1xku_A 303 NPVQ 306 (330)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 8875
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2e-28 Score=265.77 Aligned_cols=285 Identities=21% Similarity=0.233 Sum_probs=143.5
Q ss_pred CccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCC---CCCCCcEEEccCCccccccccccccCCCCCEEECCCCc
Q 041976 506 SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPV---PPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNR 582 (901)
Q Consensus 506 ~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 582 (901)
.++.++++++.++.++...+++++.|++++|.+.+..+. .+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 467777777777766655555555555555555443321 23445555555555554445555555555555555555
Q ss_pred CcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccc--ccCCccccCCCcccEEeCCCCcCccCc
Q 041976 583 LNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG--GAIPQSLVNCTKVEVLDIGNIKINDAF 660 (901)
Q Consensus 583 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~ 660 (901)
++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.++ +..+..+..+ +|++|++++|++++.
T Consensus 114 l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l- 187 (332)
T 2ft3_A 114 LV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI- 187 (332)
T ss_dssp CC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-
T ss_pred CC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-
Confidence 54 3443332 24555555555555444444555555555555555553 2334444444 455555555554442
Q ss_pred cccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCcccee
Q 041976 661 PYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQ 740 (901)
Q Consensus 661 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~ 740 (901)
|..+. ++|++|++++|.+.+..+... ..+++|+.|++++|.+.+..+..+
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~-------------------------- 237 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSL-------------------------- 237 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGG--------------------------
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHh--------------------------
Confidence 22221 344445555554443332221 344444444444444443222111
Q ss_pred ceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCC------CCCCEEeC
Q 041976 741 DSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNL------AKLESLDL 814 (901)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L------~~L~~L~L 814 (901)
..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|... .+|+.|++
T Consensus 238 ---------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 238 ---------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp ---------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred ---------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 01355566666666665 455556666666666666666665555555432 45566666
Q ss_pred CCCccC--CCCCcCCcCCCCCCeeeCCCCc
Q 041976 815 SSNNVA--GKIPKPLTSLTSLSVLNLSHNR 842 (901)
Q Consensus 815 s~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 842 (901)
++|.+. +..|..|..+++|+.+++++|+
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccccCcccccccchhhhhhccccc
Confidence 666665 4555556666666666666653
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.6e-31 Score=301.14 Aligned_cols=367 Identities=17% Similarity=0.185 Sum_probs=215.3
Q ss_pred cccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEe
Q 041976 406 VNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLD 485 (901)
Q Consensus 406 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ 485 (901)
++|++|++++|+++.......+..+++|++|++++|.++..... .++..+..+++|++|+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--------------------~l~~~l~~~~~L~~L~ 62 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK--------------------DISSALRVNPALAELN 62 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH--------------------HHHHHHHTCTTCCEEE
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH--------------------HHHHHHHhCCCcCEEe
Confidence 56788888888877665444477777888887777776533211 2345566677777777
Q ss_pred CCCCcccccCChhhhhcCCC----CccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcccc
Q 041976 486 LSENKIDGQIPSWISEIGKD----SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTG 561 (901)
Q Consensus 486 ls~n~l~~~~p~~~~~~~~~----~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 561 (901)
+++|.+.+..+..+.. .+. +|++|++++|.++......+ .......++|++|++++|.+++
T Consensus 63 Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~i~~~~~~~l--------------~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVL--------------SSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp CTTCCCHHHHHHHHHH-TTCSTTCCCCEEECTTSCCBGGGHHHH--------------HHHTTSCTTCCEEECCSSBCHH
T ss_pred CCCCcCChHHHHHHHH-HHhhCCCceeEEEccCCCCCHHHHHHH--------------HHHHccCCceeEEECCCCcCch
Confidence 7777776544433321 111 34444444444332110000 0000112345555555555544
Q ss_pred cccccccc-----CCCCCEEECCCCcCcccC----CcchhcCCCCccEEECCCCcccccCCcCcc-----CCCccCEEEc
Q 041976 562 EIIHSICD-----IIALDVLDLSNNRLNGTI----PECIGNFSPSLSVLDLRNNRLNGSIPGTFA-----ESNWLRSLNL 627 (901)
Q Consensus 562 ~~~~~~~~-----l~~L~~L~Ls~n~l~~~~----p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L 627 (901)
..+..+.. .++|++|++++|.+++.. +..+..++ +|++|++++|.+++..+..+. ..++|++|++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 33332222 345666666666665432 33333333 666666666666543322222 2345666666
Q ss_pred cCCccccc----CCccccCCCcccEEeCCCCcCccCc-----cccccCCCCCcEEEccCCcCccc----CCCCCCCCCCC
Q 041976 628 NNNELGGA----IPQSLVNCTKVEVLDIGNIKINDAF-----PYWLGNLPELQVLVLRSNKFHGS----VREFEPKESFP 694 (901)
Q Consensus 628 s~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~~~l~ 694 (901)
++|.++.. ++..+..+++|++|++++|++.+.. +..+..+++|++|++++|.++.. ++.. +..++
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~ 284 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV--LRAKE 284 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH--HHHCT
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH--HhhCC
Confidence 66666542 3445555666666666666655432 22223455666666666655432 1111 12345
Q ss_pred CCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccc
Q 041976 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE 774 (901)
Q Consensus 695 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 774 (901)
+|++|++++|.+.+..+..+... .....+.|++|++++|.+++.
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~------------------------------------l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCET------------------------------------LLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHH------------------------------------HTSTTCCCCEEECTTSCCBGG
T ss_pred CcceEECCCCCCchHHHHHHHHH------------------------------------hccCCccceeeEcCCCCCchH
Confidence 56666666665543222111100 001135899999999999876
Q ss_pred ----cchhhhccCCCCeEeCCCCcCCCCCCccccC-----CCCCCEEeCCCCccCC----CCCcCCcCCCCCCeeeCCCC
Q 041976 775 ----ISQVIGKLHSLRLLNLSHNHFTGQIPSSLGN-----LAKLESLDLSSNNVAG----KIPKPLTSLTSLSVLNLSHN 841 (901)
Q Consensus 775 ----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----L~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N 841 (901)
++..+..+++|++|+|++|.+++..+..+.. .++|++|+|++|++++ .+|..+..+++|++|++++|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 6777888999999999999998766655543 6799999999999996 78888999999999999999
Q ss_pred cCccC
Q 041976 842 RLDGP 846 (901)
Q Consensus 842 ~l~g~ 846 (901)
++++.
T Consensus 409 ~i~~~ 413 (461)
T 1z7x_W 409 CLGDA 413 (461)
T ss_dssp SCCHH
T ss_pred CCCHH
Confidence 99754
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=260.69 Aligned_cols=273 Identities=20% Similarity=0.198 Sum_probs=194.5
Q ss_pred eccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccccc
Q 041976 532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS 611 (901)
Q Consensus 532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 611 (901)
+++++.++......++++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+. +|++|++++|++++.
T Consensus 37 ~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNL 115 (353)
T ss_dssp ECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSC
T ss_pred eCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcC
Confidence 3333333333333345677777777777766666777888888888888888766666677665 888888888888765
Q ss_pred CCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCC-cCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976 612 IPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNI-KINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689 (901)
Q Consensus 612 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 689 (901)
.+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+.+..+...
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l- 194 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL- 194 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-
Confidence 55557788888888888888875444 46778888888888887 4666667778888888888888888876655544
Q ss_pred CCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976 690 KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN 769 (901)
Q Consensus 690 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 769 (901)
..+++|++|++++|.+. .+|..++.. +++|++|++++|
T Consensus 195 -~~l~~L~~L~l~~n~l~-~~~~~~~~~----------------------------------------~~~L~~L~L~~n 232 (353)
T 2z80_A 195 -KSIQNVSHLILHMKQHI-LLLEIFVDV----------------------------------------TSSVECLELRDT 232 (353)
T ss_dssp -TTCSEEEEEEEECSCST-THHHHHHHH----------------------------------------TTTEEEEEEESC
T ss_pred -hccccCCeecCCCCccc-cchhhhhhh----------------------------------------cccccEEECCCC
Confidence 66778888888888874 344433322 456777777777
Q ss_pred ccccccchhh---hccCCCCeEeCCCCcCCC----CCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCc
Q 041976 770 GFDGEISQVI---GKLHSLRLLNLSHNHFTG----QIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNR 842 (901)
Q Consensus 770 ~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 842 (901)
.+++..+..+ .....++.++|+++.+++ .+|..+..+++|+.|||++|+++...+..|..+++|++|++++|+
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 7776554433 235667778888887775 467778888888899999998885444446888899999999998
Q ss_pred CccCCC
Q 041976 843 LDGPIP 848 (901)
Q Consensus 843 l~g~iP 848 (901)
+.+..|
T Consensus 313 ~~~~~~ 318 (353)
T 2z80_A 313 WDCSCP 318 (353)
T ss_dssp BCCCHH
T ss_pred ccCcCC
Confidence 888665
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.2e-26 Score=257.85 Aligned_cols=230 Identities=25% Similarity=0.285 Sum_probs=138.2
Q ss_pred CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL 625 (901)
Q Consensus 546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 625 (901)
++++++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|+|++|++++..+..|..+++|++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 34555555555555555555555555555555555555544444444443 55555555555554444445555555555
Q ss_pred EccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCc
Q 041976 626 NLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINN 705 (901)
Q Consensus 626 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 705 (901)
+|++|+++...+..|..+++|++|++++ |...+.++.. .+..+++|++|++++|.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~------------------------~~~l~~i~~~-~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGE------------------------LKKLEYISEG-AFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCC------------------------CTTCCEECTT-TTTTCTTCCEEECTTSC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCC------------------------CCCccccChh-hccCCCCCCEEECCCCc
Confidence 5555555544444445555555555544 3322222221 12445555555555555
Q ss_pred cccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCC
Q 041976 706 FSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSL 785 (901)
Q Consensus 706 l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 785 (901)
+++. |. + ..+++|++|+|++|.+++..|..|.++++|
T Consensus 208 l~~~-~~-~-----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 208 IKDM-PN-L-----------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp CSSC-CC-C-----------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred cccc-cc-c-----------------------------------------cccccccEEECcCCcCcccCcccccCccCC
Confidence 5431 21 0 014566777777777777777778888888
Q ss_pred CeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc
Q 041976 786 RLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844 (901)
Q Consensus 786 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 844 (901)
++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 88888888888877888888888888888888888777777888888888888888764
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.7e-26 Score=246.04 Aligned_cols=247 Identities=24% Similarity=0.263 Sum_probs=158.4
Q ss_pred eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCccc--CCcchhcCCCCccEEECCCCcc
Q 041976 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGT--IPECIGNFSPSLSVLDLRNNRL 608 (901)
Q Consensus 531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~~~~~L~~L~L~~n~l 608 (901)
++++++.++......++++++|++++|.++...+..+.++++|++|++++|.++.. .|..+..+. +|++|++++|.+
T Consensus 12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i 90 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFNGV 90 (306)
T ss_dssp EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSCSE
T ss_pred EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCCcc
Confidence 33333333333333345666666666666654444566677777777777776522 234444443 666666666666
Q ss_pred cccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcc-cCCC
Q 041976 609 NGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHG-SVRE 686 (901)
Q Consensus 609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~ 686 (901)
+. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+.
T Consensus 91 ~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 91 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 53 34446666666666666666665443 345556666666666666555555555555555555555554432 1111
Q ss_pred CCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEc
Q 041976 687 FEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDF 766 (901)
Q Consensus 687 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 766 (901)
.. .. +++|++|++
T Consensus 170 ~~--~~-----------------------------------------------------------------l~~L~~L~L 182 (306)
T 2z66_A 170 IF--TE-----------------------------------------------------------------LRNLTFLDL 182 (306)
T ss_dssp CC--TT-----------------------------------------------------------------CTTCCEEEC
T ss_pred HH--hh-----------------------------------------------------------------CcCCCEEEC
Confidence 11 12 355667777
Q ss_pred cccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCC-CCCeeeCCCCcCcc
Q 041976 767 SSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT-SLSVLNLSHNRLDG 845 (901)
Q Consensus 767 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g 845 (901)
++|++++..|..+.++++|++|+|++|++++..+..|..+++|+.|||++|++++..|..+..++ +|++|+|++|++++
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 77777767777788888899999999998888777888888999999999999888888888884 89999999999886
Q ss_pred C
Q 041976 846 P 846 (901)
Q Consensus 846 ~ 846 (901)
.
T Consensus 263 ~ 263 (306)
T 2z66_A 263 T 263 (306)
T ss_dssp S
T ss_pred c
Confidence 4
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.8e-26 Score=255.46 Aligned_cols=229 Identities=23% Similarity=0.309 Sum_probs=141.6
Q ss_pred CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL 625 (901)
Q Consensus 546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 625 (901)
+++++.|++++|++++..+..|.++++|++|++++|.+++..+..+..+. +|++|+|++|++++..+..|..+++|++|
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 45556666666666655556666666666666666666544444454444 66666666666655555555566666666
Q ss_pred EccCCcccccCCccccCCCcccEEeCCCCc-CccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCC
Q 041976 626 NLNNNELGGAIPQSLVNCTKVEVLDIGNIK-INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN 704 (901)
Q Consensus 626 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n 704 (901)
+|++|+++...+..|..+++|++|++++|+ +....+..|.++++ |++|++++|
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~--------------------------L~~L~L~~n 195 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN--------------------------LRYLNLAMC 195 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS--------------------------CCEEECTTS
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc--------------------------cCeecCCCC
Confidence 666666655555555555555555555532 22222333444444 445555554
Q ss_pred ccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCC
Q 041976 705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS 784 (901)
Q Consensus 705 ~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 784 (901)
.++. +|. + ..+++|++|+|++|++++..|..|.++++
T Consensus 196 ~l~~-~~~-~-----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 196 NLRE-IPN-L-----------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp CCSS-CCC-C-----------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCcc-ccc-c-----------------------------------------CCCcccCEEECCCCccCccChhhhccCcc
Confidence 4431 221 0 01355667777777777666777777778
Q ss_pred CCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc
Q 041976 785 LRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844 (901)
Q Consensus 785 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 844 (901)
|++|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 888888888887777777777888888888888887777777777788888888888764
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.9e-27 Score=259.08 Aligned_cols=285 Identities=22% Similarity=0.239 Sum_probs=181.6
Q ss_pred CCCCCCCCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCC
Q 041976 61 SWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLS 140 (901)
Q Consensus 61 ~w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 140 (901)
.|.....+|.|.|+ |+- +++.+. .+|. .+ .++|++|++++|.+++. .+..+.++++|++|+|+
T Consensus 22 ~~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~ 84 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKG----------SSGSLN-SIPS--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLT 84 (353)
T ss_dssp -----CCEECTTSE-EEC----------CSTTCS-SCCT--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECT
T ss_pred CCCccCCCCCCCeE-eeC----------CCCCcc-cccc--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECC
Confidence 35455677999988 753 334444 3443 33 25899999999999873 34478999999999999
Q ss_pred CCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCC--CCCCCC
Q 041976 141 DSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFP--ANNWTS 218 (901)
Q Consensus 141 ~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~--~~~~~~ 218 (901)
+|.+++..|..++.+ ++|++|++++|.+++..+..++++++|++|++++| .+.+..+ .+..++
T Consensus 85 ~n~l~~~~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 85 SNGINTIEEDSFSSL--------------GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLT 149 (353)
T ss_dssp TSCCCEECTTTTTTC--------------TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCT
T ss_pred CCccCccCHhhcCCC--------------CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCC
Confidence 999987777788888 99999999999998766666889999999999998 6664322 356677
Q ss_pred CcceeecCCC-CCccC-CccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976 219 PIEYLDVSET-SFSEL-PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL 296 (901)
Q Consensus 219 ~L~~L~Ls~~-~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (901)
+|++|++++| .+..+ |..++.+++|++|++++|.+.+..|..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 7777777777 35555 345667777777777777777666677777777777777777765332233445667777777
Q ss_pred cCCcCcccCCC-C---CCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcc
Q 041976 297 SSNSFFGEIPD-I---FNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL 372 (901)
Q Consensus 297 s~n~l~~~~~~-~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 372 (901)
++|.+++..+. + ...+.++.++++++.+.+. .+. .+|..+..+++|++|++++|++
T Consensus 230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp ESCBCTTCCCC------CCCCCCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCC
T ss_pred CCCccccccccccccccccchhhccccccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCC
Confidence 77766654332 1 1233444444444444321 000 2344455555555555555555
Q ss_pred ccccCCC--CCCCCCEEEccCccCCCC
Q 041976 373 SGHIDEF--PSKSLQNIYLSNNRLQGS 397 (901)
Q Consensus 373 ~~~~~~~--~~~~L~~L~L~~n~l~~~ 397 (901)
+...+.. .+++|++|++++|.+.+.
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 5332221 345555666666655544
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.3e-26 Score=248.17 Aligned_cols=277 Identities=17% Similarity=0.226 Sum_probs=225.6
Q ss_pred cCCCCCC--CCCCcCccceeecCCCCeEEEEEcCCCCCCCC----CCCCcccccCccCceEeCCCCCCCCCcCCccccCC
Q 041976 58 KMISWKK--DTNCCSWDGVTCDMATGNVISLDLSCSWLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRF 131 (901)
Q Consensus 58 ~l~~w~~--~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~----~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 131 (901)
.+..|.. ..++|.|.++.|....+. -..+...|. ++....-...+++++|+|++|.++. +|..++++
T Consensus 31 aLl~~k~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~--lp~~l~~l 103 (328)
T 4fcg_A 31 VLSQWQRHYNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAFRL 103 (328)
T ss_dssp HHHHHHHHHHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS--CCSCGGGG
T ss_pred HHHHHHHhccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCchh--cChhhhhC
Confidence 5677875 357899999888422110 000111111 0000012345899999999999984 89999999
Q ss_pred CCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccC
Q 041976 132 RNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKF 211 (901)
Q Consensus 132 ~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~ 211 (901)
++|++|+|++|.+. .+|..++.+ ++|++|++++|.+. .+|..++++++|++|++++| .+.+.+
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l--------------~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-~~~~~~ 166 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQF--------------AGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-PELTEL 166 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGG--------------TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE-TTCCCC
T ss_pred CCCCEEECCCCCcc-chhHHHhcc--------------CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC-CCcccc
Confidence 99999999999998 899999999 99999999999998 78999999999999999998 777777
Q ss_pred CCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCC
Q 041976 212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL 291 (901)
Q Consensus 212 ~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 291 (901)
|.. +... .++..++.+++|++|++++|.+. .+|..++++++|++|++++|.+++ +|..++.+++|
T Consensus 167 p~~-----~~~~--------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L 231 (328)
T 4fcg_A 167 PEP-----LAST--------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231 (328)
T ss_dssp CSC-----SEEE--------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred Chh-----Hhhc--------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence 721 0000 12234566999999999999998 788899999999999999999994 67789999999
Q ss_pred CEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCC
Q 041976 292 TYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN 370 (901)
Q Consensus 292 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 370 (901)
++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999999999988887 889999999999999999999999999999999999999999999999999999999998877
Q ss_pred ccc
Q 041976 371 QLS 373 (901)
Q Consensus 371 ~l~ 373 (901)
.+.
T Consensus 312 ~~~ 314 (328)
T 4fcg_A 312 LQA 314 (328)
T ss_dssp GSC
T ss_pred HHH
Confidence 554
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.4e-28 Score=260.28 Aligned_cols=246 Identities=25% Similarity=0.259 Sum_probs=175.9
Q ss_pred CcEEEccCCccccccccccccCCCCCEEECCCCcCc-ccCCcchh-------cCCCCccEEECCCCcccccCCcCc--cC
Q 041976 549 LRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLN-GTIPECIG-------NFSPSLSVLDLRNNRLNGSIPGTF--AE 618 (901)
Q Consensus 549 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~--~~ 618 (901)
|+++++++|.+ .+|..+... |++|++++|.+. ..+|..+. .+. +|++|++++|++++.+|..+ ..
T Consensus 45 L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 45 LEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp CTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred ceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHhc
Confidence 44445555555 344444333 566666666663 33444433 344 77777777777776666655 67
Q ss_pred CCccCEEEccCCcccccCCccccCC-----CcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccC--CCCCCCC
Q 041976 619 SNWLRSLNLNNNELGGAIPQSLVNC-----TKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV--REFEPKE 691 (901)
Q Consensus 619 l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~~~~~~~ 691 (901)
+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..++.+++|++|++++|++.+.+ +....+.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 77777777777777766 6666655 77888888888887777777778888888888888766542 1122235
Q ss_pred CCCCCcEEEcCCCccccC--CcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976 692 SFPKLRILDLSINNFSGY--LPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN 769 (901)
Q Consensus 692 ~l~~L~~L~Ls~n~l~~~--~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 769 (901)
.+++|++|++++|.+++. ++..++ ..+++|++|++++|
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~----------------------------------------~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALA----------------------------------------AARVQLQGLDLSHN 238 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHH----------------------------------------HTTCCCSEEECTTS
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHH----------------------------------------hcCCCCCEEECCCC
Confidence 678888888888888631 111111 12577899999999
Q ss_pred ccccccc-hhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976 770 GFDGEIS-QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845 (901)
Q Consensus 770 ~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 845 (901)
++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9998775 45677899999999999999 6777776 8999999999999987 66 8999999999999999986
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.3e-29 Score=295.47 Aligned_cols=431 Identities=15% Similarity=0.099 Sum_probs=294.6
Q ss_pred CcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCC--CcCCcccc------------CCCC
Q 041976 68 CCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDY--SEISSGFS------------RFRN 133 (901)
Q Consensus 68 ~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~~~~~l~------------~l~~ 133 (901)
|++|.++.+.. .+ .+.+... .....+. .+..+++|++|+++++.... ..+|..++ .+++
T Consensus 41 ck~W~~~~~~~--~~--~l~~~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 41 CRRWFKIDSET--RE--HVTMALC-YTATPDR--LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp CHHHHHHHHHH--CC--EEEESCG-GGSCHHH--HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred hHHHHHhhhcc--cc--EEEEeec-cccChHH--HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 45899986542 12 2233322 1222222 45678999999998854210 01333333 7899
Q ss_pred CceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc-CCC-CCccccCCCCCCCEEeCCCCCCCCccC
Q 041976 134 LTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI-LQG-NFPINIFHLPNPQMIRLSQNPSLAGKF 211 (901)
Q Consensus 134 L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~-~~~-~~p~~l~~l~~L~~L~L~~n~~l~~~~ 211 (901)
|++|+|++|.+++..+..++.. ++.+|++|++++|. +.. .++....++++|++|+|++| .+++.-
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~------------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~ 180 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKA------------RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKD 180 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHH------------HGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCC
T ss_pred CCeEEeeccEecHHHHHHHHHh------------ccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcc
Confidence 9999999998776555544431 11349999999886 221 12333457899999999999 655431
Q ss_pred ----CC-CCCCCCcceeecCCCCCc-----cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCC---
Q 041976 212 ----PA-NNWTSPIEYLDVSETSFS-----ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS--- 278 (901)
Q Consensus 212 ----~~-~~~~~~L~~L~Ls~~~l~-----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~--- 278 (901)
+. ...+++|++|++++|.++ .++..+..+++|++|++++|.+.+ +|..+.++++|++|+++.....
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch
Confidence 11 245788999999999886 334456688999999999988875 6777888999999999854332
Q ss_pred CCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCC-ccccCCcCCcEEECcCCcCcccCChhh
Q 041976 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIP-SHGSRLQNLVLIRLNNNSFSGTIPSWL 356 (901)
Q Consensus 279 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l 356 (901)
...+..+..+++|++|+++++... .++. +..+++|++|++++|.+++... ..+..+++|++|+++++...+.++...
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence 234456778889999999876433 3344 6678899999999998764433 346788999999998443333444555
Q ss_pred cCCCCCcEEEccC-----------CccccccC-C--CCCCCCCEEEccCccCCCCCchhhhc-ccccCceecc----cCc
Q 041976 357 FSLPLLEYVRLSD-----------NQLSGHID-E--FPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLD----SNN 417 (901)
Q Consensus 357 ~~l~~L~~L~L~~-----------n~l~~~~~-~--~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~ 417 (901)
..+++|++|++++ +.+++... . ..+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 6788999999993 44443211 1 14788999999888888777777765 8899999996 567
Q ss_pred CCCccc----hhhhhhcCCCcEEEccCCc--cccccccccCCCCCCccEEecCCcCCC--CCChhhccCCCCCEEeCCCC
Q 041976 418 FSGIAE----PYMFAKLIKLKYLYLSHNS--LSLGNTFKIDSPFPKFSYLSLSACNIS--AFPRFLRTQDELSYLDLSEN 489 (901)
Q Consensus 418 l~~~~~----~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~L~~L~l~~~~l~--~lp~~l~~~~~L~~L~ls~n 489 (901)
+++... +..+.++++|++|+++.|. +++.....+...+++|++|++++|+++ .++..+..+++|++|++++|
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 776421 2346778999999997543 554444444445788999999999886 35566778899999999999
Q ss_pred cccccCChhhhhcCCCCccEEEcCCCccCCcc
Q 041976 490 KIDGQIPSWISEIGKDSLSYVNLSHNFITKMK 521 (901)
Q Consensus 490 ~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~ 521 (901)
.+++.....+. ..+++|+.|++++|+++...
T Consensus 499 ~l~~~~~~~~~-~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 499 CFSERAIAAAV-TKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp CCBHHHHHHHH-HHCSSCCEEEEESCBCCTTC
T ss_pred CCcHHHHHHHH-HhcCccCeeECcCCcCCHHH
Confidence 87655443332 35688999999999887653
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.3e-26 Score=245.46 Aligned_cols=250 Identities=20% Similarity=0.257 Sum_probs=161.0
Q ss_pred cCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCc-cccCCCCCceeeCCCCcCCC-
Q 041976 69 CSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISS-GFSRFRNLTHFSLSDSNINC- 146 (901)
Q Consensus 69 c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L~Ls~~~~~~- 146 (901)
|.|.+|.|... ++. .+|. .+ .++|++|++++|.++. +|. .++++++|++|+|++|.+..
T Consensus 7 C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 7 CSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp EETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred eCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence 78999998642 222 2332 22 2578888888888875 554 46788888888888887762
Q ss_pred -CCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeec
Q 041976 147 -KIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDV 225 (901)
Q Consensus 147 -~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~L 225 (901)
..|..+..+ ++|++|++++|.+. .+|..+..+++|++|++++| .+.+..+
T Consensus 68 ~~~~~~~~~~--------------~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n-~l~~~~~------------- 118 (306)
T 2z66_A 68 GCCSQSDFGT--------------TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS-NLKQMSE------------- 118 (306)
T ss_dssp EEEEHHHHSC--------------SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTS-EEESSTT-------------
T ss_pred cCcccccccc--------------cccCEEECCCCccc-cChhhcCCCCCCCEEECCCC-ccccccc-------------
Confidence 224444445 67777777777665 34555666666666666666 3332211
Q ss_pred CCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCC-CCCccccCCCCCCEEEccCCcCccc
Q 041976 226 SETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG-HIPSSLSNLVQLTYLDLSSNSFFGE 304 (901)
Q Consensus 226 s~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ 304 (901)
+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++.
T Consensus 119 --------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 119 --------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp --------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred --------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence 0245666677777777776666666666667777777777777665 4566666777777777777777666
Q ss_pred CCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCC-CCcEEEccCCcccc
Q 041976 305 IPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLP-LLEYVRLSDNQLSG 374 (901)
Q Consensus 305 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~ 374 (901)
.+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+.+
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 554 66666777777777776665555666667777777777777666666666663 66666666665543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.5e-26 Score=241.57 Aligned_cols=236 Identities=19% Similarity=0.173 Sum_probs=132.8
Q ss_pred CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCc-ccccCCcCccCCCccCE
Q 041976 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNR-LNGSIPGTFAESNWLRS 624 (901)
Q Consensus 546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 624 (901)
++++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+. +|++|++++|. +....|..|..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 34455555555555544444455555555555555555544444444443 55555555554 44443444455555555
Q ss_pred EEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCC
Q 041976 625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN 704 (901)
Q Consensus 625 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n 704 (901)
|++++|++++..|..|..+++|++|++++|++.+..+..+.. +++|++|++++|
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------l~~L~~L~l~~n 163 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------------------------LGNLTHLFLHGN 163 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------CTTCCEEECCSS
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc--------------------------CCCccEEECCCC
Confidence 555555554444444444444444444444444444433444 455555555555
Q ss_pred ccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCC
Q 041976 705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS 784 (901)
Q Consensus 705 ~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 784 (901)
.+++..+..+ . .+++|++|++++|.+++..|..|+++++
T Consensus 164 ~l~~~~~~~~-~----------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 164 RISSVPERAF-R----------------------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp CCCEECTTTT-T----------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cccccCHHHh-c----------------------------------------CccccCEEECCCCcccccCHhHccCccc
Confidence 5543222111 0 1355667777777777777777778888
Q ss_pred CCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC
Q 041976 785 LRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG 850 (901)
Q Consensus 785 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~ 850 (901)
|++|++++|++++..+..+..+++|+.|+|++|++.+..+.. .-...++.+..+.+.+.+..|..
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 888888888888777777888888888888888887543321 11233455566777777777754
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=3.2e-28 Score=286.97 Aligned_cols=240 Identities=15% Similarity=0.061 Sum_probs=142.0
Q ss_pred CCccccCCCCCceeeCCCCcC---CCCCCcccccccccccchhhcc-cCCCCccEEEcCCCcCCCCCccccCC-CCC-CC
Q 041976 124 ISSGFSRFRNLTHFSLSDSNI---NCKIPYEISFLKMSTVVLDSLK-NLSSSLTSLSLSDCILQGNFPINIFH-LPN-PQ 197 (901)
Q Consensus 124 ~~~~l~~l~~L~~L~Ls~~~~---~~~~p~~l~~l~~~~~~~~~~~-~l~~~L~~L~Ls~~~~~~~~p~~l~~-l~~-L~ 197 (901)
.+..+.++++|++|+|+++.. .+.+|...+.. ....+..+. .+ ++|++|+|++|.+++..+..++. +++ |+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~ 141 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGY--VTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKARADDLE 141 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCB--CHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred hHHHHHhCCCCeEEEecCCcchhhccccccccccc--chHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence 345567899999999988653 24556554432 111112222 33 88999999999888777777766 444 99
Q ss_pred EEeCCCCCCCCc-cCCC-CCCCCCcceeecCCCCCccC-----CccccCCCCcCEEECCCCCCc----cCCCccccCCCC
Q 041976 198 MIRLSQNPSLAG-KFPA-NNWTSPIEYLDVSETSFSEL-----PDSIGNLKLLGRLMLGYSQFV----GPVPASLGNLTQ 266 (901)
Q Consensus 198 ~L~L~~n~~l~~-~~~~-~~~~~~L~~L~Ls~~~l~~l-----p~~l~~l~~L~~L~L~~n~~~----~~~p~~l~~l~~ 266 (901)
+|++++|..+.. .++. ...+++|++|++++|.+... +..+..+++|++|++++|.+. +.++..+.++++
T Consensus 142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 999998832211 1111 12456777777777765432 223445677777777777765 223334456677
Q ss_pred CCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCc---ccC-CCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEE
Q 041976 267 LTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFF---GEI-PDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342 (901)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 342 (901)
|++|++++|.+.+ +|..+..+++|++|+++..... ... ..+..+++|+.|+++++.. +.+|..+..+++|++|+
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD 299 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence 7777777776664 5566667777777777643221 011 1245566666666665432 24555566666666666
Q ss_pred CcCCcCcccCC-hhhcCCCCCcEEEcc
Q 041976 343 LNNNSFSGTIP-SWLFSLPLLEYVRLS 368 (901)
Q Consensus 343 L~~n~l~~~~~-~~l~~l~~L~~L~L~ 368 (901)
+++|.+++... ..+..+++|++|+++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 66666543322 234556666666665
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.8e-25 Score=236.95 Aligned_cols=212 Identities=24% Similarity=0.189 Sum_probs=125.3
Q ss_pred CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECC
Q 041976 170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLG 249 (901)
Q Consensus 170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~ 249 (901)
++|++|++++|.+++..|..+..+++|++|++++|..+....+ ..+..+++|++|+++
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~----------------------~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP----------------------ATFHGLGRLHTLHLD 113 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT----------------------TTTTTCTTCCEEECT
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH----------------------HHhcCCcCCCEEECC
Confidence 4444444444444444444455555555555555511222212 445555566666666
Q ss_pred CCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCC
Q 041976 250 YSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPI 328 (901)
Q Consensus 250 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 328 (901)
+|.+.+..|..+.++++|++|++++|.+++..+..++.+++|++|++++|++++..+. +..+++|++|++++|.+++..
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 6666555555666666666666666666655555566677777777777776665554 666777777777777777666
Q ss_pred CccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC-CCCCCCEEEccCccCCCCCchhhh
Q 041976 329 PSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIF 403 (901)
Q Consensus 329 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~ 403 (901)
|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+.. ....++.+....+.+....|..+.
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhC
Confidence 777777777777777777777666666777777777777777765432221 111223333444444445555443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.5e-25 Score=252.26 Aligned_cols=251 Identities=21% Similarity=0.199 Sum_probs=212.3
Q ss_pred CCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652 (901)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 652 (901)
...++.++..++ .+|..+. +++++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456778888877 6776543 489999999999999889999999999999999999999988999999999999999
Q ss_pred CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCccc
Q 041976 653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLR 732 (901)
Q Consensus 653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~ 732 (901)
+|++++..+..|..+++|++|++++|++....+.. +..+++|+.|++++|+..+.++...+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~---------------- 193 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFE---------------- 193 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhH--HhcCCcccEEeCCCCCCccccChhhcc----------------
Confidence 99999988888999999999999999998654433 378999999999997655555432211
Q ss_pred ccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEE
Q 041976 733 YLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESL 812 (901)
Q Consensus 733 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L 812 (901)
.+++|++|+|++|++++. | .+..+++|++|+|++|++++..|..|.++++|+.|
T Consensus 194 ------------------------~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 247 (452)
T 3zyi_A 194 ------------------------GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247 (452)
T ss_dssp ------------------------TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEE
T ss_pred ------------------------CCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEE
Confidence 157889999999999865 4 48889999999999999999999999999999999
Q ss_pred eCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC-CCCCCcccccccCCcCCCCCC
Q 041976 813 DLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG-PQFNTFQEDSYIGNLGLCGFP 871 (901)
Q Consensus 813 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~ 871 (901)
+|++|++++..|..|..+++|++|+|++|++++..|.. ..+..+....+.+||.-|+|.
T Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred EeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 99999999999999999999999999999999655443 235566677778888777665
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=250.41 Aligned_cols=251 Identities=20% Similarity=0.225 Sum_probs=207.6
Q ss_pred CCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652 (901)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 652 (901)
...++.+++.++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456777777777 6776554 488999999999998888889999999999999999998888889999999999999
Q ss_pred CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCccc
Q 041976 653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLR 732 (901)
Q Consensus 653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~ 732 (901)
+|+++...+..|..+++|++|++++|++....+.. +..+++|++|++++|+..+.++...+.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~---------------- 182 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFE---------------- 182 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHH--hhhCcccCEeCCCCCCCcceeCcchhh----------------
Confidence 99998888888889999999999999987654433 367889999999986655544432211
Q ss_pred ccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEE
Q 041976 733 YLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESL 812 (901)
Q Consensus 733 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L 812 (901)
.+++|++|++++|+++. +| .+..+++|++|+|++|++++..|..|.++++|+.|
T Consensus 183 ------------------------~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 183 ------------------------GLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp ------------------------TCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ------------------------cccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEE
Confidence 15788999999999984 44 48899999999999999999999999999999999
Q ss_pred eCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC-CCCCCcccccccCCcCCCCCC
Q 041976 813 DLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG-PQFNTFQEDSYIGNLGLCGFP 871 (901)
Q Consensus 813 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~ 871 (901)
+|++|++++..|..|..+++|++|+|++|++++..|.. ..+..+....+.+||.-|+|.
T Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999999999999999999999655443 345566667777887777653
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.3e-25 Score=257.05 Aligned_cols=291 Identities=20% Similarity=0.253 Sum_probs=172.8
Q ss_pred cCCCCCCCCCCcCccceeecC------CCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCC
Q 041976 58 KMISWKKDTNCCSWDGVTCDM------ATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRF 131 (901)
Q Consensus 58 ~l~~w~~~~~~c~w~gv~c~~------~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 131 (901)
.++.|..+.+||.|+|..|.- ....++.|+++++.+. .+|. .+. ++|++|++++|.++. +|. .+
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~---~l 80 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---LP 80 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---CC
T ss_pred HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---cC
Confidence 577888788999997754421 0123555666665555 3333 222 455555555555543 343 34
Q ss_pred CCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccC
Q 041976 132 RNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKF 211 (901)
Q Consensus 132 ~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~ 211 (901)
++|++|+|++|.++ .+|. .+ ++|++|++++|.+++ +
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l--------------~~L~~L~Ls~N~l~~--------------------------l 116 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LP--------------PGLLELSIFSNPLTH--------------------------L 116 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CC--------------TTCCEEEECSCCCCC--------------------------C
T ss_pred CCCCEEEcCCCcCC-cCCC---CC--------------CCCCEEECcCCcCCC--------------------------C
Confidence 55555555555544 2333 22 444555555444443 2
Q ss_pred CCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCC
Q 041976 212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL 291 (901)
Q Consensus 212 ~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 291 (901)
|. .+++|++|++++|.++.+|.. +++|++|++++|.+.+ +|. .+++|+.|++++|.+++ +| ..+++|
T Consensus 117 ~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L 183 (622)
T 3g06_A 117 PA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGL 183 (622)
T ss_dssp CC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred CC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCC
Confidence 21 344555555555555555543 2566666666666653 332 23556666777666663 34 345667
Q ss_pred CEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCc
Q 041976 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQ 371 (901)
Q Consensus 292 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 371 (901)
++|++++|.+++..+ ..++|+.|++++|.++. +|.. +++|++|++++|.+++ +| ..+++|+.|++++|.
T Consensus 184 ~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 184 QELSVSDNQLASLPT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR 252 (622)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred cEEECCCCCCCCCCC---ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence 777777776664322 23567777777777663 4432 3667777777777774 44 445777788888877
Q ss_pred cccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhc
Q 041976 372 LSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKL 430 (901)
Q Consensus 372 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l 430 (901)
++.... .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+ ..+..+
T Consensus 253 L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~L 307 (622)
T 3g06_A 253 LTSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL-QALREI 307 (622)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH-HHHHHH
T ss_pred CCcCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH-HHHHhc
Confidence 774333 5677888888888887 667788888888888888888887654 445444
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.9e-27 Score=255.35 Aligned_cols=244 Identities=21% Similarity=0.223 Sum_probs=161.8
Q ss_pred cCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcC-CCCCCcccc-------cccccccchhhcccCCCCccEEE
Q 041976 105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI-NCKIPYEIS-------FLKMSTVVLDSLKNLSSSLTSLS 176 (901)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~-~~~~p~~l~-------~l~~~~~~~~~~~~l~~~L~~L~ 176 (901)
..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. .+ ++|++|+
T Consensus 41 ~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l--------------~~L~~L~ 101 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI--------------SGLQELT 101 (312)
T ss_dssp EEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT--------------SCCCEEE
T ss_pred cCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc--------------CCccEEE
Confidence 345566666666666 255544433 66666666666 334554443 34 6666666
Q ss_pred cCCCcCCCCCcccc--CCCCCCCEEeCCCCCCCCccCCC-CCCC-----CCcceeecCCCCCccCC-ccccCCCCcCEEE
Q 041976 177 LSDCILQGNFPINI--FHLPNPQMIRLSQNPSLAGKFPA-NNWT-----SPIEYLDVSETSFSELP-DSIGNLKLLGRLM 247 (901)
Q Consensus 177 Ls~~~~~~~~p~~l--~~l~~L~~L~L~~n~~l~~~~~~-~~~~-----~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~ 247 (901)
+++|.+++..|..+ +.+++|++|++++| .+++. |. +..+ ++|++|++++|.+..++ ..++.+++|++|+
T Consensus 102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 102 LENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp EEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred ccCCcccchhHHHHHHhcCCCccEEEccCC-CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence 66666666666654 66666666666666 55554 32 2222 56666666666666655 6778888888888
Q ss_pred CCCCCCccC--CCccc--cCCCCCCEEECCCCcCCCC--CC-ccccCCCCCCEEEccCCcCcccCCC--CCCCCCCCEEE
Q 041976 248 LGYSQFVGP--VPASL--GNLTQLTLLHLMHNNFSGH--IP-SSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVSFFD 318 (901)
Q Consensus 248 L~~n~~~~~--~p~~l--~~l~~L~~L~L~~n~l~~~--~p-~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~ 318 (901)
+++|++.+. +|..+ .++++|++|++++|.+++. ++ ..+..+++|++|++++|.+.+..|. +..+++|++|+
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 888887654 23344 7788888888888887731 22 3345678888888888888876642 55678888888
Q ss_pred CCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976 319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374 (901)
Q Consensus 319 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 374 (901)
+++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus 260 Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8888887 6676665 7788888888888765 54 7777778888887777654
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.8e-24 Score=248.15 Aligned_cols=262 Identities=23% Similarity=0.280 Sum_probs=157.9
Q ss_pred CCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcc
Q 041976 480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQF 559 (901)
Q Consensus 480 ~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l 559 (901)
.++.|++++|.++ .+|..+ .++|+.|++++|.++.++. .+++|++|++++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l----~~~L~~L~L~~N~l~~lp~----------------------~l~~L~~L~Ls~N~l 93 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLTSLPA----------------------LPPELRTLEVSGNQL 93 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCC----CTTCSEEEECSCCCSCCCC----------------------CCTTCCEEEECSCCC
T ss_pred CCcEEEecCCCcC-ccChhh----CCCCcEEEecCCCCCCCCC----------------------cCCCCCEEEcCCCcC
Confidence 3556666666555 334332 1445555555555544433 345556666666655
Q ss_pred ccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCcc
Q 041976 560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQS 639 (901)
Q Consensus 560 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 639 (901)
++ +|. .+++|++|++++|.+++ +|. ..++|+.|++++|++++ +|.. +++|++|++++|++++. |.
T Consensus 94 ~~-lp~---~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~- 158 (622)
T 3g06_A 94 TS-LPV---LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA- 158 (622)
T ss_dssp SC-CCC---CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC-
T ss_pred Cc-CCC---CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC-
Confidence 53 222 45566666666666652 333 12366666666666664 3322 35666666666666642 32
Q ss_pred ccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhH
Q 041976 640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLN 719 (901)
Q Consensus 640 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~ 719 (901)
..++|+.|++++|++++. | ..+++|+.|++++|.+.+ ++. .+++|+.|++++|.++. +|.
T Consensus 159 --~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~-l~~------- 218 (622)
T 3g06_A 159 --LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLTS-LPA------- 218 (622)
T ss_dssp --CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSS-CCC-------
T ss_pred --ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCcccc-cCC-------
Confidence 235566666666666553 2 345667777777776654 221 23567777777776652 221
Q ss_pred hhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCC
Q 041976 720 AMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQI 799 (901)
Q Consensus 720 ~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 799 (901)
.+++|++|++++|.+++ +| ..+++|++|+|++|+|++ +
T Consensus 219 -------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-l 256 (622)
T 3g06_A 219 -------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-L 256 (622)
T ss_dssp -------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred -------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-C
Confidence 03567777888887775 44 446778888888888874 4
Q ss_pred CccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCC
Q 041976 800 PSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH 849 (901)
Q Consensus 800 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 849 (901)
|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 44 4677888888888888 5677788888888888888888877664
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=5.8e-27 Score=252.15 Aligned_cols=246 Identities=20% Similarity=0.209 Sum_probs=132.8
Q ss_pred CCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEE
Q 041976 547 SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLN 626 (901)
Q Consensus 547 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 626 (901)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+. +|++|++++|++++.. ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC-CCCEEECcCCcccccc-----CCCCcCEEE
Confidence 345555555555554444445555555555555555543322 33333 4555555555544321 124455555
Q ss_pred ccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcc
Q 041976 627 LNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF 706 (901)
Q Consensus 627 Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 706 (901)
+++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+.+..+... ...+++|++|++++|.+
T Consensus 106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-hhccCcCCEEECCCCcC
Confidence 5555554433322 2344555555555544444444444455555555554443322211 01234444444444444
Q ss_pred ccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCC
Q 041976 707 SGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR 786 (901)
Q Consensus 707 ~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 786 (901)
++ ++... .+++|++|++++|++++..+ .+..+++|+
T Consensus 182 ~~-------------------------~~~~~------------------~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~ 217 (317)
T 3o53_A 182 YD-------------------------VKGQV------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVT 217 (317)
T ss_dssp CE-------------------------EECCC------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCS
T ss_pred cc-------------------------ccccc------------------ccccCCEEECCCCcCCcchh-hhcccCccc
Confidence 32 21100 14667778888888875444 477778888
Q ss_pred eEeCCCCcCCCCCCccccCCCCCCEEeCCCCccC-CCCCcCCcCCCCCCeeeCCC-CcCccCCCC
Q 041976 787 LLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA-GKIPKPLTSLTSLSVLNLSH-NRLDGPIPH 849 (901)
Q Consensus 787 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~-N~l~g~iP~ 849 (901)
+|+|++|++++ +|..+..+++|+.|+|++|+++ +.+|..+..+++|+.+++++ +.+.|..|.
T Consensus 218 ~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 88888888774 5666777778888888888877 66677777777777777773 346665554
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.6e-23 Score=220.75 Aligned_cols=227 Identities=23% Similarity=0.215 Sum_probs=177.8
Q ss_pred EECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCc
Q 041976 576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIK 655 (901)
Q Consensus 576 L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~ 655 (901)
.+..+..+. .+|..+ +++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344455554 456543 2478888888888887777778888888888888888887777778888888888888888
Q ss_pred CccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccC-CcHHHHHhhHhhhcccccCCccccc
Q 041976 656 INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGY-LPERFLENLNAMRNVSADEGKLRYL 734 (901)
Q Consensus 656 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~l~l~~~~~~~l 734 (901)
+.+..+..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+. +|..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~-------------------- 145 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYF-------------------- 145 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGG--------------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchh--cccCCCCCEEECcCCccceecCchhh--------------------
Confidence 88877777888888888888888877654433 36778888888888888753 35322
Q ss_pred CccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCC----eEeCCCCcCCCCCCccccCCCCCC
Q 041976 735 GEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR----LLNLSHNHFTGQIPSSLGNLAKLE 810 (901)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~L~~L~ 810 (901)
..+++|++|++++|++++..+..+..+++|+ +|++++|.+++..+..+.. .+|+
T Consensus 146 ---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~ 203 (276)
T 2z62_A 146 ---------------------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLK 203 (276)
T ss_dssp ---------------------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEE
T ss_pred ---------------------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-Cccc
Confidence 1157788999999999988888888888877 8999999999877766655 4899
Q ss_pred EEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC
Q 041976 811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG 850 (901)
Q Consensus 811 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~ 850 (901)
.|+|++|++++..+..|..+++|++|++++|++.+..|.-
T Consensus 204 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp EEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred EEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 9999999999888888899999999999999999877643
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.9e-23 Score=215.41 Aligned_cols=214 Identities=25% Similarity=0.294 Sum_probs=110.5
Q ss_pred CCCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCC
Q 041976 66 TNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNIN 145 (901)
Q Consensus 66 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~ 145 (901)
.++|.|.|+.|.- .+.++.++++++.+.. +|. .+. +++++|++++|.++.. .+..+.++++|++|+|++|.++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence 4789999999963 3456678888877774 443 222 5677777777777653 3345666777777777776665
Q ss_pred CCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeec
Q 041976 146 CKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDV 225 (901)
Q Consensus 146 ~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~L 225 (901)
...+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++| .+++..+
T Consensus 75 ~i~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------- 126 (270)
T 2o6q_A 75 TLPAGIFKEL--------------KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPP------------- 126 (270)
T ss_dssp CCCTTTTSSC--------------TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCT-------------
T ss_pred eeChhhhcCC--------------CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCH-------------
Confidence 3222233445 56666666666555444444444555555555444 3332222
Q ss_pred CCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccC
Q 041976 226 SETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI 305 (901)
Q Consensus 226 s~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 305 (901)
..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 127 ---------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 127 ---------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp ---------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ---------HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 23344444444444444444333333444444444444444444333333444444444444444444333
Q ss_pred CC-CCCCCCCCEEECCCCC
Q 041976 306 PD-IFNLTQVSFFDLSNNQ 323 (901)
Q Consensus 306 ~~-~~~l~~L~~L~l~~n~ 323 (901)
+. +..+++|+.|++++|.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhccccCCCEEEecCCC
Confidence 22 3333344444444433
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5e-25 Score=250.85 Aligned_cols=236 Identities=20% Similarity=0.201 Sum_probs=125.8
Q ss_pred CCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEE
Q 041976 547 SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLN 626 (901)
Q Consensus 547 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 626 (901)
++|++|++++|.+++..|..+..+++|++|++++|.+++..| +..+. +|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 456666666666666666666666666666666666664443 44443 66666666666654322 25566666
Q ss_pred ccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcc
Q 041976 627 LNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF 706 (901)
Q Consensus 627 Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 706 (901)
+++|.+++..+.. +++|++|++++|.+++..|..++.+++|++|++++|.+.+..+.... ..+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcc
Confidence 6666666544432 34566666666666665555555556666666665555543332210 1344555555555554
Q ss_pred ccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCC
Q 041976 707 SGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR 786 (901)
Q Consensus 707 ~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 786 (901)
++..+.. .+++|++|+|++|.+++.+|. +..+++|+
T Consensus 182 ~~~~~~~-------------------------------------------~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~ 217 (487)
T 3oja_A 182 YDVKGQV-------------------------------------------VFAKLKTLDLSSNKLAFMGPE-FQSAAGVT 217 (487)
T ss_dssp CEEECCC-------------------------------------------CCTTCCEEECCSSCCCEECGG-GGGGTTCS
T ss_pred ccccccc-------------------------------------------cCCCCCEEECCCCCCCCCCHh-HcCCCCcc
Confidence 4321100 034455555555555543332 55555555
Q ss_pred eEeCCCCcCCCCCCccccCCCCCCEEeCCCCccC-CCCCcCCcCCCCCCeeeCC
Q 041976 787 LLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA-GKIPKPLTSLTSLSVLNLS 839 (901)
Q Consensus 787 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls 839 (901)
.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 55555555553 3444555555555555555555 3444444455555555443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.1e-25 Score=249.64 Aligned_cols=223 Identities=22% Similarity=0.220 Sum_probs=186.2
Q ss_pred cCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccE
Q 041976 569 DIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEV 648 (901)
Q Consensus 569 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 648 (901)
.+++|++|++++|.+++..|..+..+. +|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 445899999999999977777887776 99999999999987765 8899999999999999986443 388999
Q ss_pred EeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccC
Q 041976 649 LDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADE 728 (901)
Q Consensus 649 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~ 728 (901)
|++++|.+.+..+. .+++|++|++++|.+.+..+... ..+++|+.|++++|.+++.+|..+..
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~------------ 166 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA------------ 166 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG------------
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh------------
Confidence 99999999887664 46889999999999987766544 56889999999999998876654321
Q ss_pred CcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCC
Q 041976 729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK 808 (901)
Q Consensus 729 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~ 808 (901)
.+++|++|+|++|.+++..+ +..+++|++|+|++|.+++.+| .|..+++
T Consensus 167 ----------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~ 215 (487)
T 3oja_A 167 ----------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG 215 (487)
T ss_dssp ----------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred ----------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCC
Confidence 15778999999999997744 3469999999999999997655 5999999
Q ss_pred CCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc-cCCC
Q 041976 809 LESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD-GPIP 848 (901)
Q Consensus 809 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~iP 848 (901)
|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|
T Consensus 216 L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9999999999996 6778999999999999999998 5554
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=4.7e-25 Score=237.22 Aligned_cols=257 Identities=15% Similarity=0.153 Sum_probs=125.2
Q ss_pred CceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCcc
Q 041976 109 LQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPI 188 (901)
Q Consensus 109 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~ 188 (901)
++..+++.+.+... +...+..+++|++|+|++|.+.+..|..++.+ ++|++|++++|.+++..+
T Consensus 12 l~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~- 75 (317)
T 3o53_A 12 YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPF--------------TKLELLNLSSNVLYETLD- 75 (317)
T ss_dssp EEEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC--------------TTCCEEECTTSCCEEEEE-
T ss_pred eeEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCC--------------CcCCEEECCCCcCCcchh-
Confidence 44445555544332 22334455566666666666665545555555 666666666666654433
Q ss_pred ccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCC
Q 041976 189 NIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLT 268 (901)
Q Consensus 189 ~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 268 (901)
+..+++|++|++++| .+++.. ..++|++|++++|.++.++.. .+++|++|++++|.+.+..+..+..+++|+
T Consensus 76 -~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 76 -LESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp -ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred -hhhcCCCCEEECcCC-cccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 556666666666666 333221 124455555555544443321 234444444444444443344444444444
Q ss_pred EEECCCCcCCCCCCccc-cCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCc
Q 041976 269 LLHLMHNNFSGHIPSSL-SNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347 (901)
Q Consensus 269 ~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 347 (901)
+|++++|.+++..+..+ ..+++|++|++++|.+++. +... .+++|++|++++|.
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~------------------------~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQV------------------------VFAKLKTLDLSSNK 202 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCC------------------------CCTTCCEEECCSSC
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cccc------------------------ccccCCEEECCCCc
Confidence 44444444444333333 2344444444444444432 2222 24445555555555
Q ss_pred CcccCChhhcCCCCCcEEEccCCccccccCCC-CCCCCCEEEccCccCC-CCCchhhhcccccCceeccc
Q 041976 348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQ-GSIPSSIFELVNLTDLQLDS 415 (901)
Q Consensus 348 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 415 (901)
+++. |..+..+++|++|++++|.+++..... .+++|+.|++++|.+. +.++.++..+++|+.+++++
T Consensus 203 l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 203 LAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 4432 222444455555555555444322211 3344555555555554 45566677777777777764
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.1e-25 Score=265.58 Aligned_cols=407 Identities=15% Similarity=0.129 Sum_probs=204.7
Q ss_pred CCCCCCEEEccCccCCCCCchhhh-cccccCceecccC-cCCCccchhhhhhcCCCcEEEccCCccccccc---cccCCC
Q 041976 380 PSKSLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSN-NFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNT---FKIDSP 454 (901)
Q Consensus 380 ~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~ 454 (901)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++....+....++++|++|++++|.+++... ..+...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 356777777777777666555665 6788888888887 44443223445578888888888888765432 223345
Q ss_pred CCCccEEecCCcC--CC--CCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCce
Q 041976 455 FPKFSYLSLSACN--IS--AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGY 530 (901)
Q Consensus 455 ~~~L~~L~l~~~~--l~--~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~ 530 (901)
+++|++|++++|. +. .++.....+++|++|++++|...+.++..+ ..+++|+.|+++.+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~------------- 247 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGYTA------------- 247 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBCCC-------------
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccccC-------------
Confidence 6788888888776 21 122234557888888888873322345544 4455666666544321
Q ss_pred eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEE-ECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVL-DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609 (901)
Q Consensus 531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 609 (901)
++..+.+.+ ++..+.++++|+.| .+.+... +.++..+..+. +|++|++++|.++
T Consensus 248 ----------------------~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~-~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 248 ----------------------EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS-RLTTLNLSYATVQ 302 (594)
T ss_dssp ----------------------CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT-TCCEEECTTCCCC
T ss_pred ----------------------ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhC-CCCEEEccCCCCC
Confidence 011122222 22244455555555 2222221 12232222332 5555555555543
Q ss_pred ccC-CcCccCCCccCEEEccCCccccc-CCccccCCCcccEEeCC---------CCcCccCcccccc-CCCCCcEEEccC
Q 041976 610 GSI-PGTFAESNWLRSLNLNNNELGGA-IPQSLVNCTKVEVLDIG---------NIKINDAFPYWLG-NLPELQVLVLRS 677 (901)
Q Consensus 610 ~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~---------~n~l~~~~~~~l~-~l~~L~~L~L~~ 677 (901)
+.. +..+..+++|++|++++| ++.. ++.....+++|++|++. .+.+++.....+. .+++|++|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 221 111334455555555555 2211 11112235555555552 2233322222222 255555555555
Q ss_pred CcCcccCCCCCCCCCCCCCcEEEcC--C----CccccCCcH----HHHHhhHhhhcccccCCcccccCccceeceeEEee
Q 041976 678 NKFHGSVREFEPKESFPKLRILDLS--I----NNFSGYLPE----RFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTL 747 (901)
Q Consensus 678 n~~~~~~~~~~~~~~l~~L~~L~Ls--~----n~l~~~~p~----~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~ 747 (901)
|.+++...... ...+++|+.|+++ + +.+++.... ..+..+++|+.+++++ .+...
T Consensus 382 ~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~------------- 446 (594)
T 2p1m_B 382 RQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK------------- 446 (594)
T ss_dssp SCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH-------------
T ss_pred CCcCHHHHHHH-HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH-------------
Confidence 55433211111 0124555555555 2 233211101 1123334444444432 11000
Q ss_pred cchhHHHhhhccceeEEEccccccccccchhh-hccCCCCeEeCCCCcCCCCCCc-cccCCCCCCEEeCCCCccCCCCCc
Q 041976 748 KGTEIEMQKILTVFTTIDFSSNGFDGEISQVI-GKLHSLRLLNLSHNHFTGQIPS-SLGNLAKLESLDLSSNNVAGKIPK 825 (901)
Q Consensus 748 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~L~~L~~L~Ls~N~l~~~~p~ 825 (901)
....+...+++|+.|+|++|.+++..+..+ .++++|++|+|++|.+++..+. ....+++|+.|++++|+++....+
T Consensus 447 --~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 524 (594)
T 2p1m_B 447 --VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACK 524 (594)
T ss_dssp --HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHH
T ss_pred --HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH
Confidence 000111225677788888888776555444 6678888888888877544333 334577788888888877543333
Q ss_pred CC-cCCCCCCeeeCCCCcCc
Q 041976 826 PL-TSLTSLSVLNLSHNRLD 844 (901)
Q Consensus 826 ~l-~~l~~L~~L~Ls~N~l~ 844 (901)
.+ ..++.|+...+..+.-.
T Consensus 525 ~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 525 LLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHCTTEEEEEECSSSCG
T ss_pred HHHHhCCCCEEEEecCCCcc
Confidence 33 34566666666655443
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=4e-26 Score=269.27 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=65.3
Q ss_pred cccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCc-cCCCccCEEEccCCcccccCCc-cccCCC
Q 041976 567 ICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTF-AESNWLRSLNLNNNELGGAIPQ-SLVNCT 644 (901)
Q Consensus 567 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~ 644 (901)
+..+++|++|++++ .+++..+..+....++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++.... ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 45566777777766 55544444444423367777777777655433333 4566777777777777543332 334467
Q ss_pred cccEEeCCCCcCccCccccc-cCCCCCcEEEccCCc
Q 041976 645 KVEVLDIGNIKINDAFPYWL-GNLPELQVLVLRSNK 679 (901)
Q Consensus 645 ~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~ 679 (901)
+|++|++++|+++......+ ..+|.|+...+..+.
T Consensus 507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 77777777777644433333 345666665555543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6.2e-22 Score=207.63 Aligned_cols=205 Identities=25% Similarity=0.289 Sum_probs=151.1
Q ss_pred CCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeC
Q 041976 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDI 651 (901)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 651 (901)
..+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4567777777777 5665443 37778888888777666667777777778877777777666666677777777777
Q ss_pred CCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcc
Q 041976 652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL 731 (901)
Q Consensus 652 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~ 731 (901)
++|++.+..+..+..+++|++|++++|.+.+..+... ..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~--------------------------------------- 131 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DS--------------------------------------- 131 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TT---------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--Cc---------------------------------------
Confidence 7777776666666666666666666665543322211 22
Q ss_pred cccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCE
Q 041976 732 RYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLES 811 (901)
Q Consensus 732 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 811 (901)
+++|++|++++|.+++..+..|+.+++|++|+|++|++++..+..|..+++|+.
T Consensus 132 --------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 132 --------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp --------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred --------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 345566666666666655666788899999999999999888888999999999
Q ss_pred EeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCC
Q 041976 812 LDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI 847 (901)
Q Consensus 812 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 847 (901)
|+|++|++++..+..|..+++|++|+|++|++...-
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 999999999888888999999999999999987643
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.9e-22 Score=210.14 Aligned_cols=209 Identities=21% Similarity=0.233 Sum_probs=120.9
Q ss_pred CCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652 (901)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 652 (901)
|++|++++|.+++..+..+..+. +|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 44444444444433332333333 44444444444444444444445555555555555554444445555555555555
Q ss_pred CCcCccCccccccCCCCCcEEEccCCcCccc-CCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcc
Q 041976 653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGS-VREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL 731 (901)
Q Consensus 653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~ 731 (901)
+|++.+..+..+..+++|++|++++|.+.+. ++.. +..+++|++|++++|++++..+.. +..+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~--~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L---------- 175 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM---------- 175 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--GGGCTTCCEEECCSSCCCEECGGG-GHHHHTC----------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchh--hccCCCCCEEECCCCCCCcCCHHH-hhhhhhc----------
Confidence 5555544444455555555555555555431 1222 244566666666666666543322 2322222
Q ss_pred cccCccceeceeEEeecchhHHHhhhcccee-EEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCC
Q 041976 732 RYLGEEYYQDSVVVTLKGTEIEMQKILTVFT-TIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE 810 (901)
Q Consensus 732 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 810 (901)
+.+. +|++++|.+++..+..+.. .+|++|+|++|++++..+..|..+++|+
T Consensus 176 ---------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 176 ---------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp ---------------------------TTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred ---------------------------cccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccccc
Confidence 2222 7899999998766665554 4899999999999988888889999999
Q ss_pred EEeCCCCccCCCC
Q 041976 811 SLDLSSNNVAGKI 823 (901)
Q Consensus 811 ~L~Ls~N~l~~~~ 823 (901)
.|+|++|++++..
T Consensus 228 ~L~l~~N~~~c~c 240 (276)
T 2z62_A 228 KIWLHTNPWDCSC 240 (276)
T ss_dssp EEECCSSCBCCCT
T ss_pred EEEccCCcccccC
Confidence 9999999998654
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=217.62 Aligned_cols=230 Identities=22% Similarity=0.225 Sum_probs=168.3
Q ss_pred CCCEEECCCCcCcccCCc---chhcCCCCccEEECCCCcccccCCcCc--cCCCccCEEEccCCcccccCC----ccccC
Q 041976 572 ALDVLDLSNNRLNGTIPE---CIGNFSPSLSVLDLRNNRLNGSIPGTF--AESNWLRSLNLNNNELGGAIP----QSLVN 642 (901)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~---~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~----~~l~~ 642 (901)
.++.+.+.++.++..... ...... +|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 355566666555421100 111222 68888888888887777777 778888888888888876544 33456
Q ss_pred CCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCccc--CCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHh
Q 041976 643 CTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS--VREFEPKESFPKLRILDLSINNFSGYLPERFLENLNA 720 (901)
Q Consensus 643 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 720 (901)
+++|++|++++|++.+..+..+..+++|++|++++|++.+. ++.......+++|++|++++|+++. ++....
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~----- 217 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA----- 217 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH-----
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH-----
Confidence 88888888888888888888888888888888888887642 2222223568899999999998863 222110
Q ss_pred hhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhcc---CCCCeEeCCCCcCCC
Q 041976 721 MRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKL---HSLRLLNLSHNHFTG 797 (901)
Q Consensus 721 L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~Ls~N~l~~ 797 (901)
.....+++|++|||++|++++..|..+..+ ++|++|+|++|+++
T Consensus 218 --------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~- 264 (310)
T 4glp_A 218 --------------------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE- 264 (310)
T ss_dssp --------------------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-
T ss_pred --------------------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-
Confidence 001125778899999999998888777776 69999999999999
Q ss_pred CCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976 798 QIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845 (901)
Q Consensus 798 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 845 (901)
.+|..+. ++|++|||++|++++. |. +..+++|++|+|++|+++.
T Consensus 265 ~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 265 QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 5677665 7999999999999975 43 6788999999999999974
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=4.2e-22 Score=209.08 Aligned_cols=207 Identities=21% Similarity=0.254 Sum_probs=146.1
Q ss_pred CCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEEC
Q 041976 193 LPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL 272 (901)
Q Consensus 193 l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 272 (901)
+++|+.|++++| .+. .++.+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 40 l~~L~~L~l~~~-~i~-~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIK-SVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTS-CCC-CCTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCC-Ccc-cccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 344444444444 222 223344445555555555555554 35777778888888888877666666777888888888
Q ss_pred CCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCccc
Q 041976 273 MHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351 (901)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 351 (901)
++|.+++..+..++.+++|++|++++|.+++..+. +..+++|++|++++|++++..+..++.+++|++|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 88888876666678888888888888888766665 56788888888888888876666778888888888888888877
Q ss_pred CChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccc
Q 041976 352 IPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN 407 (901)
Q Consensus 352 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 407 (901)
.+..+..+++|++|++++|.+.+. ++.++.+++..|.++|.+|.+++.+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~-----~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCT-----CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC-----TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CHHHHhCCcCCCEEEccCCCcccc-----CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 777778888888888888876643 446777777777777777777665543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=5.4e-21 Score=202.06 Aligned_cols=176 Identities=20% Similarity=0.183 Sum_probs=100.8
Q ss_pred CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECC
Q 041976 170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLG 249 (901)
Q Consensus 170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~ 249 (901)
+.+++|++++|.+++..+..+..+++|++|++++| .+++..+ ...+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 45666666666666655666666677777777766 5543222 245556666666666666666666666666666666
Q ss_pred CCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCC
Q 041976 250 YSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPI 328 (901)
Q Consensus 250 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 328 (901)
+|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+. +..+++|++|++++|+++ .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 6666655555566666666666666666655445555566666666666655544433 344555555555555554 34
Q ss_pred CccccCCcCCcEEECcCCcC
Q 041976 329 PSHGSRLQNLVLIRLNNNSF 348 (901)
Q Consensus 329 ~~~~~~l~~L~~L~L~~n~l 348 (901)
|..+..+.+|+.+++++|.+
T Consensus 188 p~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCB
T ss_pred ChhhcccccCCeEEeCCCCc
Confidence 44444444444444444443
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.3e-23 Score=227.29 Aligned_cols=259 Identities=18% Similarity=0.170 Sum_probs=177.9
Q ss_pred EEccCCccccccccccccCCCCCEEECCCCcCcccCC----cchhcCCCCccEEECCCCcccccCCcCccCC-----Ccc
Q 041976 552 LLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIP----ECIGNFSPSLSVLDLRNNRLNGSIPGTFAES-----NWL 622 (901)
Q Consensus 552 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L 622 (901)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++.+|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5667777777777766666668888888888775444 4444443368888888888877666666554 778
Q ss_pred CEEEccCCcccccCCccc----cCC-CcccEEeCCCCcCccCcccccc----C-CCCCcEEEccCCcCcccCCCCC--CC
Q 041976 623 RSLNLNNNELGGAIPQSL----VNC-TKVEVLDIGNIKINDAFPYWLG----N-LPELQVLVLRSNKFHGSVREFE--PK 690 (901)
Q Consensus 623 ~~L~Ls~N~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~~~~~~~~~~--~~ 690 (901)
++|+|++|++++..+..+ ..+ ++|++|++++|++++..+..+. . .++|++|++++|.+.+...... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 888888888876665543 333 7888888888888776665433 3 2588888888888764221110 00
Q ss_pred CCC-CCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976 691 ESF-PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN 769 (901)
Q Consensus 691 ~~l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 769 (901)
..+ ++|++|++++|++++..+..+...+.. ..++|++|||++|
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~------------------------------------~~~~L~~L~Ls~N 206 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLAS------------------------------------IPASVTSLDLSAN 206 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHT------------------------------------SCTTCCEEECTTS
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHh------------------------------------CCCCCCEEECCCC
Confidence 123 378888888888877665443221111 0147888899999
Q ss_pred ccccc----cchhhhc-cCCCCeEeCCCCcCCCCCC----ccccCCCCCCEEeCCCCccCCCCC-------cCCcCCCCC
Q 041976 770 GFDGE----ISQVIGK-LHSLRLLNLSHNHFTGQIP----SSLGNLAKLESLDLSSNNVAGKIP-------KPLTSLTSL 833 (901)
Q Consensus 770 ~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~L~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L 833 (901)
.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..+ +.+..+++|
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 88863 5556666 3589999999999987655 345677889999999998665433 367788889
Q ss_pred CeeeCCCCcCccC
Q 041976 834 SVLNLSHNRLDGP 846 (901)
Q Consensus 834 ~~L~Ls~N~l~g~ 846 (901)
++||+++|++.+.
T Consensus 287 ~~LdL~~N~l~~~ 299 (362)
T 3goz_A 287 ILVDKNGKEIHPS 299 (362)
T ss_dssp EEECTTSCBCCGG
T ss_pred EEEecCCCcCCCc
Confidence 9999999998765
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.7e-21 Score=204.42 Aligned_cols=209 Identities=21% Similarity=0.171 Sum_probs=119.8
Q ss_pred cccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcC
Q 041976 103 LFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL 182 (901)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~ 182 (901)
...+++|++|+++++.+.. + ..++.+++|++|+|++|.+.+ + ..++.+ ++|++|++++|.+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l--------------~~L~~L~L~~n~l 97 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVRYLALGGNKLHD-I-SALKEL--------------TNLTYLILTGNQL 97 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTC--------------TTCCEEECTTSCC
T ss_pred cccccceeeeeeCCCCccc--c-cccccCCCCcEEECCCCCCCC-c-hhhcCC--------------CCCCEEECCCCcc
Confidence 4455666666666665544 2 235556666666666665543 1 244444 5555555555555
Q ss_pred CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976 183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262 (901)
Q Consensus 183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 262 (901)
++..+..++++++|++|++++| .+++..+ ..++.+++|++|++++|.+.+..+..+.
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVEN-QLQSLPD----------------------GVFDKLTNLTYLNLAHNQLQSLPKGVFD 154 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS-CCCCCCT----------------------TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccChhHhcCCcCCCEEECCCC-cCCccCH----------------------HHhccCCCCCEEECCCCccCccCHHHhc
Confidence 5444444555555555555555 3333222 2355666666666666666655555556
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEE
Q 041976 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI 341 (901)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 341 (901)
.+++|++|++++|.+++..+..++.+++|++|++++|.+++..+. +..+++|++|++++|.+.+ .+++|+.+
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l 227 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL 227 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHH
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHH
Confidence 666666666666666655555566666666666666666665555 5566666666666666553 23456666
Q ss_pred ECcCCcCcccCChhhcCCC
Q 041976 342 RLNNNSFSGTIPSWLFSLP 360 (901)
Q Consensus 342 ~L~~n~l~~~~~~~l~~l~ 360 (901)
+++.|.++|.+|..++.++
T Consensus 228 ~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 228 SEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHHHTGGGBBCTTSCBC
T ss_pred HHHHHhCCCcccCcccccC
Confidence 6666666666666655443
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.5e-23 Score=228.02 Aligned_cols=210 Identities=19% Similarity=0.165 Sum_probs=140.6
Q ss_pred CCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccC--ccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcC
Q 041976 67 NCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHL--LHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI 144 (901)
Q Consensus 67 ~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~ 144 (901)
-|.+|.++.|+. ..++.++++++.+.+ . .+..+ +++++|++++|.+.+. +..+.++++|++|+|++|.+
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEE
T ss_pred HHHHHHHHhcCc--hhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc--chhhccCCCCCEEEccCCCc
Confidence 455899998863 457889999887762 2 56666 8999999999998875 33467899999999999998
Q ss_pred CCC-CCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCcc-CCC-CCCCCCcc
Q 041976 145 NCK-IPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGK-FPA-NNWTSPIE 221 (901)
Q Consensus 145 ~~~-~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~-~~~-~~~~~~L~ 221 (901)
.+. +|..+..+ ++|++|++++|.+++..+..++.+++|++|++++|..+++. ++. +..+++|+
T Consensus 106 ~~~~~~~~~~~~--------------~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 106 EVSTLHGILSQC--------------SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CHHHHHHHHTTB--------------CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHhhC--------------CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 765 77777777 99999999999998888888999999999999998545542 332 23445555
Q ss_pred eeecCCC-CCcc--CCccccCCC-CcCEEECCCC--CCc-cCCCccccCCCCCCEEECCCCc-CCCCCCccccCCCCCCE
Q 041976 222 YLDVSET-SFSE--LPDSIGNLK-LLGRLMLGYS--QFV-GPVPASLGNLTQLTLLHLMHNN-FSGHIPSSLSNLVQLTY 293 (901)
Q Consensus 222 ~L~Ls~~-~l~~--lp~~l~~l~-~L~~L~L~~n--~~~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~ 293 (901)
+|++++| .++. ++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 5555555 5542 344445555 5555555555 232 2333344445555555555554 44444444455555555
Q ss_pred EEccCC
Q 041976 294 LDLSSN 299 (901)
Q Consensus 294 L~Ls~n 299 (901)
|++++|
T Consensus 252 L~l~~~ 257 (336)
T 2ast_B 252 LSLSRC 257 (336)
T ss_dssp EECTTC
T ss_pred eeCCCC
Confidence 555554
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.9e-21 Score=198.35 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=68.3
Q ss_pred ceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCC
Q 041976 760 VFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLS 839 (901)
Q Consensus 760 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 839 (901)
+|++|+|++|++++..+..|+++++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|+++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 34444444444444444556778888888888888888777788888899999999999988888888888999999999
Q ss_pred CCcCccCCC
Q 041976 840 HNRLDGPIP 848 (901)
Q Consensus 840 ~N~l~g~iP 848 (901)
+|++.+..+
T Consensus 188 ~N~~~c~~~ 196 (251)
T 3m19_A 188 GNQFDCSRC 196 (251)
T ss_dssp SCCBCTTST
T ss_pred CCceeCCcc
Confidence 999887644
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=4e-20 Score=195.37 Aligned_cols=204 Identities=21% Similarity=0.187 Sum_probs=169.1
Q ss_pred ccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc
Q 041976 102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI 181 (901)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~ 181 (901)
.+.+++++++++++++.++. +|..+. +++++|+|++|.+.+..|..+..+ ++|++|++++|.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~L~~n~ 66 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPY--------------TRLTQLNLDRAE 66 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTC--------------TTCCEEECTTSC
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcC--------------CCCCEEECCCCc
Confidence 46677888888888888876 666554 688888888888887667777777 888888888888
Q ss_pred CCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCC-ccccCCCCcCEEECCCCCCccCCCcc
Q 041976 182 LQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPAS 260 (901)
Q Consensus 182 ~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~ 260 (901)
+++..+. +.+++|++|++++| .+......+..+++|++|++++|.++.+| ..+..+++|++|++++|++.+..+..
T Consensus 67 l~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 67 LTKLQVD--GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp CCEEECC--SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cCcccCC--CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 8754332 77888999999988 76633334577888999999999999887 56899999999999999999877777
Q ss_pred ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC
Q 041976 261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG 326 (901)
Q Consensus 261 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 326 (901)
+..+++|++|++++|+++...+..|..+++|++|++++|+++...+.++..++|+.+++++|.+..
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 889999999999999999766667889999999999999999666568888999999999998863
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.2e-22 Score=216.63 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=170.0
Q ss_pred CCcEEEccCCccccccccccccC--CCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccccc-CCcCccCCCccCE
Q 041976 548 SLRVLLISNNQFTGEIIHSICDI--IALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS-IPGTFAESNWLRS 624 (901)
Q Consensus 548 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 624 (901)
.++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+. +|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4566777777665 3444555 6777788887777755544 34444 777788877777654 5666777777777
Q ss_pred EEccCCcccccCCccccCCCcccEEeCCCC-cCccC-ccccccCCCCCcEEEccCC-cCccc-CCCCCCCCCCC-CCcEE
Q 041976 625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNI-KINDA-FPYWLGNLPELQVLVLRSN-KFHGS-VREFEPKESFP-KLRIL 699 (901)
Q Consensus 625 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~~~~~-~~~~~~~~~l~-~L~~L 699 (901)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.. ...++ +|++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L 200 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQL 200 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEE
Confidence 777777777666777777777777777777 56552 5555667777777777777 66532 1211 13456 77777
Q ss_pred EcCCCc--cc-cCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccc-ccccc
Q 041976 700 DLSINN--FS-GYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG-FDGEI 775 (901)
Q Consensus 700 ~Ls~n~--l~-~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 775 (901)
++++|. ++ +.+|. ....+++|++|++++|. +++..
T Consensus 201 ~l~~~~~~~~~~~l~~-----------------------------------------~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 201 NLSGYRKNLQKSDLST-----------------------------------------LVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp ECCSCGGGSCHHHHHH-----------------------------------------HHHHCTTCSEEECTTCTTCCGGG
T ss_pred EeCCCcccCCHHHHHH-----------------------------------------HHhhCCCCCEEeCCCCCcCCHHH
Confidence 777773 32 11111 11225788899999998 77777
Q ss_pred chhhhccCCCCeEeCCCCc-CCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCC-CCCCeeeCCCCcCccCCCCC
Q 041976 776 SQVIGKLHSLRLLNLSHNH-FTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL-TSLSVLNLSHNRLDGPIPHG 850 (901)
Q Consensus 776 ~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~iP~~ 850 (901)
+..+.++++|++|++++|. ++......++++++|+.|++++| ++ .+.+..+ ..+..|++++|++++..|..
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 8888999999999999995 33222236788999999999998 33 2344444 34778889999999887753
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=5.6e-21 Score=196.49 Aligned_cols=197 Identities=21% Similarity=0.223 Sum_probs=126.1
Q ss_pred CCccEEECCCCcccccCCcCccCCCccCEEEccCCc-ccccCCccccCCCcccEEeCCC-CcCccCccccccCCCCCcEE
Q 041976 596 PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNE-LGGAIPQSLVNCTKVEVLDIGN-IKINDAFPYWLGNLPELQVL 673 (901)
Q Consensus 596 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L 673 (901)
++|++|++++|+++++.+..|..+++|++|++++|+ ++++.+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378888888888887777778888888888888886 7766666788888888888887 78877777777788888888
Q ss_pred EccCCcCcccCCCCCCCCCCCCCc---EEEcCCC-ccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecc
Q 041976 674 VLRSNKFHGSVREFEPKESFPKLR---ILDLSIN-NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKG 749 (901)
Q Consensus 674 ~L~~n~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~ 749 (901)
++++|++.+ ++. +..+++|+ +|++++| .+.+..+..+ .
T Consensus 111 ~l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~--------------------------------- 152 (239)
T 2xwt_C 111 GIFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTSIPVNAF-Q--------------------------------- 152 (239)
T ss_dssp EEEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCEECTTTT-T---------------------------------
T ss_pred eCCCCCCcc-ccc---cccccccccccEEECCCCcchhhcCcccc-c---------------------------------
Confidence 888887765 333 24444554 6666666 5543222111 0
Q ss_pred hhHHHhhhcccee-EEEccccccccccchhhhccCCCCeEeCCCCc-CCCCCCccccCC-CCCCEEeCCCCccCCCCCcC
Q 041976 750 TEIEMQKILTVFT-TIDFSSNGFDGEISQVIGKLHSLRLLNLSHNH-FTGQIPSSLGNL-AKLESLDLSSNNVAGKIPKP 826 (901)
Q Consensus 750 ~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L-~~L~~L~Ls~N~l~~~~p~~ 826 (901)
.+++|+ +|++++|+++...+..+.. ++|++|+|++|+ +++..+..|..+ ++|+.||+++|++++..+.
T Consensus 153 -------~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~- 223 (239)
T 2xwt_C 153 -------GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK- 223 (239)
T ss_dssp -------TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-
T ss_pred -------chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-
Confidence 134555 6666666666333333333 566666666663 665555566666 6666666666666643332
Q ss_pred CcCCCCCCeeeCCCC
Q 041976 827 LTSLTSLSVLNLSHN 841 (901)
Q Consensus 827 l~~l~~L~~L~Ls~N 841 (901)
.+++|+.|+++++
T Consensus 224 --~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 --GLEHLKELIARNT 236 (239)
T ss_dssp --TCTTCSEEECTTC
T ss_pred --HhccCceeeccCc
Confidence 3455666666554
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=2.8e-22 Score=219.94 Aligned_cols=259 Identities=17% Similarity=0.166 Sum_probs=184.1
Q ss_pred eccCccccCCCCC---CCCCCcEEEccCCccccccc----cccccCC-CCCEEECCCCcCcccCCcchhcC----CCCcc
Q 041976 532 DLRSNLLQGPLPV---PPSSLRVLLISNNQFTGEII----HSICDII-ALDVLDLSNNRLNGTIPECIGNF----SPSLS 599 (901)
Q Consensus 532 ~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~~----~~~L~ 599 (901)
+++.|.+.+.+|. .+.+|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+... .++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 4455555554332 24568888888888887776 6677788 89999999999987666666554 24899
Q ss_pred EEECCCCcccccCCcCc----cCC-CccCEEEccCCcccccCCcccc----C-CCcccEEeCCCCcCccCcc----cccc
Q 041976 600 VLDLRNNRLNGSIPGTF----AES-NWLRSLNLNNNELGGAIPQSLV----N-CTKVEVLDIGNIKINDAFP----YWLG 665 (901)
Q Consensus 600 ~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~~~~~l~----~-l~~L~~L~l~~n~l~~~~~----~~l~ 665 (901)
+|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+. . .++|++|++++|++.+..+ ..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 99999999987666543 344 7899999999999876665543 3 4689999999999986443 3445
Q ss_pred CCC-CCcEEEccCCcCcccCCCCC--CCCCC-CCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceec
Q 041976 666 NLP-ELQVLVLRSNKFHGSVREFE--PKESF-PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD 741 (901)
Q Consensus 666 ~l~-~L~~L~L~~n~~~~~~~~~~--~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~ 741 (901)
.++ +|++|++++|++.+..+... .+..+ ++|++|++++|.+++.....+...+.
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~---------------------- 221 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS---------------------- 221 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH----------------------
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh----------------------
Confidence 565 89999999999875443211 11233 58999999999987643332221111
Q ss_pred eeEEeecchhHHHhhhccceeEEEccccccccccc----hhhhccCCCCeEeCCCCcCCCCCC-------ccccCCCCCC
Q 041976 742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEIS----QVIGKLHSLRLLNLSHNHFTGQIP-------SSLGNLAKLE 810 (901)
Q Consensus 742 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~L~~L~ 810 (901)
...++|++|||++|.+++..+ ..+..+++|++|+|++|.+.+..+ ..+.++++|+
T Consensus 222 --------------~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 222 --------------SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp --------------HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred --------------cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 113578899999999987655 334667899999999999665443 4677889999
Q ss_pred EEeCCCCccCCCCCcC
Q 041976 811 SLDLSSNNVAGKIPKP 826 (901)
Q Consensus 811 ~L~Ls~N~l~~~~p~~ 826 (901)
.||+++|++....+..
T Consensus 288 ~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 288 LVDKNGKEIHPSHSIP 303 (362)
T ss_dssp EECTTSCBCCGGGCHH
T ss_pred EEecCCCcCCCcchHH
Confidence 9999999998764433
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=7.3e-23 Score=227.02 Aligned_cols=249 Identities=17% Similarity=0.248 Sum_probs=167.4
Q ss_pred cccccccCCCCCEEECCCCcCcccCCc----chhcCCCCccEEECCCCc---ccccCCcCc-------cCCCccCEEEcc
Q 041976 563 IIHSICDIIALDVLDLSNNRLNGTIPE----CIGNFSPSLSVLDLRNNR---LNGSIPGTF-------AESNWLRSLNLN 628 (901)
Q Consensus 563 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~~~~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~Ls 628 (901)
++..+..++.|++|++++|.+++..+. .+..+. +|++|+|++|. +++.+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 444556667777777777777654332 233444 77777777753 333444333 567778888888
Q ss_pred CCcccc----cCCccccCCCcccEEeCCCCcCccCcccccc----CC---------CCCcEEEccCCcCcc-cCCCC-CC
Q 041976 629 NNELGG----AIPQSLVNCTKVEVLDIGNIKINDAFPYWLG----NL---------PELQVLVLRSNKFHG-SVREF-EP 689 (901)
Q Consensus 629 ~N~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~L~~n~~~~-~~~~~-~~ 689 (901)
+|.++. .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|++.. .++.. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 887776 3566677777888888888877654443333 23 777777777777652 22210 01
Q ss_pred CCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976 690 KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN 769 (901)
Q Consensus 690 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 769 (901)
+..+++|++|++++|.++.. ....-.+ .....+++|++|+|++|
T Consensus 183 l~~~~~L~~L~L~~n~l~~~---g~~~l~~---------------------------------~~l~~~~~L~~L~Ls~n 226 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE---GIEHLLL---------------------------------EGLAYCQELKVLDLQDN 226 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH---HHHHHHH---------------------------------TTGGGCTTCCEEECCSS
T ss_pred HHhCCCcCEEECcCCCCCHh---HHHHHHH---------------------------------HHhhcCCCccEEECcCC
Confidence 23456777777777766521 0000000 00112578899999999
Q ss_pred ccc----cccchhhhccCCCCeEeCCCCcCCCC----CCcccc--CCCCCCEEeCCCCccCC----CCCcCC-cCCCCCC
Q 041976 770 GFD----GEISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLG--NLAKLESLDLSSNNVAG----KIPKPL-TSLTSLS 834 (901)
Q Consensus 770 ~l~----~~~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~L~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~ 834 (901)
.++ +.+|..+..+++|++|+|++|.+++. +|..+. .+++|+.|+|++|.+++ .+|..+ .++++|+
T Consensus 227 ~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 996 67888899999999999999999876 566664 48999999999999998 477777 6689999
Q ss_pred eeeCCCCcCccCCC
Q 041976 835 VLNLSHNRLDGPIP 848 (901)
Q Consensus 835 ~L~Ls~N~l~g~iP 848 (901)
+|++++|++++..|
T Consensus 307 ~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 307 FLELNGNRFSEEDD 320 (386)
T ss_dssp EEECTTSBSCTTSH
T ss_pred EEEccCCcCCcchh
Confidence 99999999997654
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=202.73 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=136.6
Q ss_pred cCceEeCCCCCCCCCcCCcc--ccCCCCCceeeCCCCcCCCCCCccc--ccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976 108 HLQTLNLSHNDFDYSEISSG--FSRFRNLTHFSLSDSNINCKIPYEI--SFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ 183 (901)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~--l~~l~~L~~L~Ls~~~~~~~~p~~l--~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~ 183 (901)
.++.+++.++.++...+... +..+++|++|+|++|.+.+..|..+ +.+ ++|++|++++|.+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--------------~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG--------------LALSSLRLRNVSWA 130 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC--------------BCCSSCEEESCCCS
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC--------------CCCCEEEeeccccc
Confidence 45566666655543211111 1223556666666666666666665 555 66666666666666
Q ss_pred CCCc----cccCCCCCCCEEeCCCCCCCCccCC-CCCCCCCcceeecCCCCCcc---CC--ccccCCCCcCEEECCCCCC
Q 041976 184 GNFP----INIFHLPNPQMIRLSQNPSLAGKFP-ANNWTSPIEYLDVSETSFSE---LP--DSIGNLKLLGRLMLGYSQF 253 (901)
Q Consensus 184 ~~~p----~~l~~l~~L~~L~L~~n~~l~~~~~-~~~~~~~L~~L~Ls~~~l~~---lp--~~l~~l~~L~~L~L~~n~~ 253 (901)
+..+ ..+..+++|++|++++| .+.+..+ .+..+++|++|++++|.+.. ++ ..++.+++|++|++++|++
T Consensus 131 ~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 131 TGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp STTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred chhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 5444 23445666666766666 5554443 34566667777777666542 22 2335677777777777776
Q ss_pred ccCCCc----cccCCCCCCEEECCCCcCCCCCCccccCC---CCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC
Q 041976 254 VGPVPA----SLGNLTQLTLLHLMHNNFSGHIPSSLSNL---VQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG 326 (901)
Q Consensus 254 ~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 326 (901)
+. ++. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++.....+. ++|++|++++|++++
T Consensus 210 ~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 210 ET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS
T ss_pred Cc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC
Confidence 52 222 23566777777777777776666666665 577777777777774332243 677778888887775
Q ss_pred CCCccccCCcCCcEEECcCCcCcc
Q 041976 327 PIPSHGSRLQNLVLIRLNNNSFSG 350 (901)
Q Consensus 327 ~~~~~~~~l~~L~~L~L~~n~l~~ 350 (901)
. |. +..+++|++|++++|.++.
T Consensus 287 ~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 287 A-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred C-ch-hhhCCCccEEECcCCCCCC
Confidence 3 33 5667788888888887753
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=5.4e-20 Score=189.09 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=114.6
Q ss_pred CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL 625 (901)
Q Consensus 546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 625 (901)
+.++++|++++|++++..+..+.++++|++|++++|. .++++.+..|..+++|++|
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~------------------------~l~~i~~~~f~~l~~L~~L 85 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV------------------------TLQQLESHSFYNLSKVTHI 85 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS------------------------SCCEECTTTEESCTTCCEE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC------------------------CcceeCHhHcCCCcCCcEE
Confidence 3445555555555554444445555555555555554 1443333444444455555
Q ss_pred EccC-CcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCc---EEEccCC-cCcccCCCCCCCCCCCCCc-EE
Q 041976 626 NLNN-NELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQ---VLVLRSN-KFHGSVREFEPKESFPKLR-IL 699 (901)
Q Consensus 626 ~Ls~-N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~~~~~~~~~~~~~~l~~L~-~L 699 (901)
++++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| .+.+..+.. +..+++|+ +|
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~--~~~l~~L~~~L 161 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA--FQGLCNETLTL 161 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT--TTTTBSSEEEE
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc--ccchhcceeEE
Confidence 5544 44444444444455555555555555444 222 44444444 5555555 444332222 24455666 66
Q ss_pred EcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccc-cccccchh
Q 041976 700 DLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG-FDGEISQV 778 (901)
Q Consensus 700 ~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 778 (901)
++++|.++ .+|...+. .++|+.|++++|+ +++..+..
T Consensus 162 ~l~~n~l~-~i~~~~~~-----------------------------------------~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 162 KLYNNGFT-SVQGYAFN-----------------------------------------GTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp ECCSCCCC-EECTTTTT-----------------------------------------TCEEEEEECTTCTTCCEECTTT
T ss_pred EcCCCCCc-ccCHhhcC-----------------------------------------CCCCCEEEcCCCCCcccCCHHH
Confidence 66666655 33322110 2467888999994 88777788
Q ss_pred hhcc-CCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCc
Q 041976 779 IGKL-HSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNN 818 (901)
Q Consensus 779 l~~l-~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 818 (901)
|.++ ++|++|++++|++++..+. .+++|+.|+++++.
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred hhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9999 9999999999999965544 56789999998874
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=3.2e-22 Score=221.87 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=67.4
Q ss_pred ccccCCCCcCEEECCCCCCccCCCccc----cCC---------CCCCEEECCCCcCC-CCCC---ccccCCCCCCEEEcc
Q 041976 235 DSIGNLKLLGRLMLGYSQFVGPVPASL----GNL---------TQLTLLHLMHNNFS-GHIP---SSLSNLVQLTYLDLS 297 (901)
Q Consensus 235 ~~l~~l~~L~~L~L~~n~~~~~~p~~l----~~l---------~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~Ls 297 (901)
..+..+++|++|++++|.+.+..+..+ ..+ ++|++|++++|.++ +.++ ..+..+++|++|+++
T Consensus 116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 444555555555555555543222222 222 55666666666554 2222 234455566666666
Q ss_pred CCcCcc-----cCC-CCCCCCCCCEEECCCCCCC----CCCCccccCCcCCcEEECcCCcCccc----CChhhc--CCCC
Q 041976 298 SNSFFG-----EIP-DIFNLTQVSFFDLSNNQLA----GPIPSHGSRLQNLVLIRLNNNSFSGT----IPSWLF--SLPL 361 (901)
Q Consensus 298 ~n~l~~-----~~~-~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~--~l~~ 361 (901)
+|.+.. ..+ .+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .+++
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 665541 222 2445555555555555553 33444555555555555555555433 233332 2444
Q ss_pred CcEEEccCCccc
Q 041976 362 LEYVRLSDNQLS 373 (901)
Q Consensus 362 L~~L~L~~n~l~ 373 (901)
|++|++++|.++
T Consensus 276 L~~L~L~~n~i~ 287 (386)
T 2ca6_A 276 LQTLRLQYNEIE 287 (386)
T ss_dssp CCEEECCSSCCB
T ss_pred eEEEECcCCcCC
Confidence 555555444444
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=3.5e-19 Score=184.39 Aligned_cols=178 Identities=20% Similarity=0.210 Sum_probs=150.1
Q ss_pred ceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcc
Q 041976 529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL 608 (901)
Q Consensus 529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 608 (901)
++++++++.+.......++.+++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+. +|++|++++|++
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 95 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQL 95 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCC
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCcc
Confidence 3444444444444444456788888888888888888899999999999999999977777777776 999999999999
Q ss_pred cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCC
Q 041976 609 NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFE 688 (901)
Q Consensus 609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 688 (901)
++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..+..+..+++|++|+|++|++.+..+...
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 98888889999999999999999998888888999999999999999998888889999999999999999987655443
Q ss_pred CCCCCCCCcEEEcCCCccccC
Q 041976 689 PKESFPKLRILDLSINNFSGY 709 (901)
Q Consensus 689 ~~~~l~~L~~L~Ls~n~l~~~ 709 (901)
..+++|+.|++++|++.+.
T Consensus 176 --~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 --DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --TTCTTCCEEECCSCCBCTT
T ss_pred --hCCCCCCEEEeeCCceeCC
Confidence 6789999999999999876
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=8.1e-20 Score=195.10 Aligned_cols=107 Identities=26% Similarity=0.392 Sum_probs=51.3
Q ss_pred ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcE
Q 041976 261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVL 340 (901)
Q Consensus 261 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 340 (901)
+..+++|++|++++|.+++..+ ++.+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 199 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIE 199 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCE
Confidence 3344444444444444432211 4444444444444444443222 4444455555555555443222 455555555
Q ss_pred EECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976 341 IRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374 (901)
Q Consensus 341 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 374 (901)
|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 200 L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 200 VHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred EEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 555555555433 25556666666666666543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2.1e-19 Score=191.85 Aligned_cols=173 Identities=25% Similarity=0.336 Sum_probs=80.3
Q ss_pred ccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCE
Q 041976 237 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSF 316 (901)
Q Consensus 237 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~ 316 (901)
+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++. + .+..+++|++|++++|.+++. +.+..+++|++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCE
Confidence 444444555555444444322 1 44444555555555444422 1 344444555555555544432 22444444444
Q ss_pred EECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCC
Q 041976 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 396 (901)
Q Consensus 317 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~ 396 (901)
|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+ ++
T Consensus 134 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l----------------------~~ 187 (308)
T 1h6u_A 134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI----------------------SD 187 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC----------------------CC
T ss_pred EECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc----------------------Cc
Confidence 4444444443221 4444445555555544443221 44444444444444433 32
Q ss_pred CCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcccc
Q 041976 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL 445 (901)
Q Consensus 397 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 445 (901)
..+ +..+++|++|++++|++++.. .+..+++|++|++++|+++.
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeec
Confidence 211 455555555666655555542 25556666666666666553
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=8.4e-20 Score=209.00 Aligned_cols=210 Identities=19% Similarity=0.240 Sum_probs=128.0
Q ss_pred cCCCCCCCCCCc-----Cccce-eecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCC
Q 041976 58 KMISWKKDTNCC-----SWDGV-TCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRF 131 (901)
Q Consensus 58 ~l~~w~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 131 (901)
.+.+|..+.++| .|.|+ .|.. ++++.|+|+++.+.+ +|. .+ +++|++|+|++|.++. +| ..+
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~~l 99 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---ELP 99 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---CCC
T ss_pred HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---ccc
Confidence 356676666677 69999 7862 478889998888876 555 33 3778888888888774 56 456
Q ss_pred CCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccC
Q 041976 132 RNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKF 211 (901)
Q Consensus 132 ~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~ 211 (901)
++|++|+|++|.+++ +|. +. .+|++|++++|.+++ +|. .+++|++|++++| .+++ +
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~----------------~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N-~l~~-l 155 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LP----------------ASLKHLDVDNNQLTM-LPE---LPALLEYINADNN-QLTM-L 155 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC----------------TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSC-C
T ss_pred CCCCEEEccCCCCCC-cch-hh----------------cCCCEEECCCCcCCC-CCC---cCccccEEeCCCC-ccCc-C
Confidence 777777777777765 555 22 366677777776665 444 4556666666666 4443 3
Q ss_pred CCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCC
Q 041976 212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL 291 (901)
Q Consensus 212 ~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 291 (901)
| . .+++|++|++++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +|
T Consensus 156 p----------------------~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L 202 (571)
T 3cvr_A 156 P----------------------E---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN 202 (571)
T ss_dssp C----------------------C---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----
T ss_pred C----------------------C---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh
Confidence 3 3 33455555555555543 343 33 55555555555555 3343 332 44
Q ss_pred -------CEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCc
Q 041976 292 -------TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQ 336 (901)
Q Consensus 292 -------~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 336 (901)
++|++++|.++...+.++.+++|+.|++++|.+++.+|..+..+.
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 666666666664333355666777777777777666666655443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.1e-18 Score=190.08 Aligned_cols=239 Identities=17% Similarity=0.137 Sum_probs=124.1
Q ss_pred eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcc-hhcCCCCcc-EEECCCCcc
Q 041976 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPEC-IGNFSPSLS-VLDLRNNRL 608 (901)
Q Consensus 531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~-~L~L~~n~l 608 (901)
++++++.++......++++++|++++|+|+...+..|.++++|++|+|++|.+.+.+|.. +.++. ++. .+.+++|++
T Consensus 14 v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEETTC
T ss_pred EEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCCcc
Confidence 334444443322223455666666666666555555666666666666666665445433 23333 333 344455556
Q ss_pred cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC-CcCccCccccccCCCCCcEEEccCCcCcccCCCC
Q 041976 609 NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN-IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687 (901)
Q Consensus 609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 687 (901)
+.+.|..|..+++|++|++++|+++...+..+....++..+++.+ +++....+..|..+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~------------------- 153 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS------------------- 153 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-------------------
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc-------------------
Confidence 555555566666666666666665554444444444455555533 333333333333322
Q ss_pred CCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcc
Q 041976 688 EPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS 767 (901)
Q Consensus 688 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 767 (901)
..++.|++++|+++. +|...+. ...+++++++
T Consensus 154 ------~~l~~L~L~~N~i~~-i~~~~f~-----------------------------------------~~~L~~l~l~ 185 (350)
T 4ay9_X 154 ------FESVILWLNKNGIQE-IHNSAFN-----------------------------------------GTQLDELNLS 185 (350)
T ss_dssp ------SSCEEEECCSSCCCE-ECTTSST-----------------------------------------TEEEEEEECT
T ss_pred ------hhhhhhccccccccC-CChhhcc-----------------------------------------ccchhHHhhc
Confidence 235555555555542 2211100 2345666665
Q ss_pred c-cccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCC
Q 041976 768 S-NGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN 841 (901)
Q Consensus 768 ~-N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 841 (901)
+ |.++...+..|+++++|++|||++|+|+.+.+..|. +|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4 444443344567777777777777777755444443 34444444444334555 3666777777777653
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1e-18 Score=190.46 Aligned_cols=237 Identities=16% Similarity=0.110 Sum_probs=172.3
Q ss_pred CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccE-EeC
Q 041976 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEV-LDI 651 (901)
Q Consensus 574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~-L~l 651 (901)
++++.++++++ .+|..+ ++++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777888887 777655 3489999999999997777789999999999999999876554 56888888775 566
Q ss_pred CCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcc
Q 041976 652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL 731 (901)
Q Consensus 652 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~ 731 (901)
+.|++....|..|..+++|++|++++|++....+... ....++..+++.++.-...+|...+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~--------------- 150 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFV--------------- 150 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSST---------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccchh---------------
Confidence 6789998888999999999999999999875543322 44566778888664322233321110
Q ss_pred cccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCC-CcCCCCCCccccCCCCCC
Q 041976 732 RYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSH-NHFTGQIPSSLGNLAKLE 810 (901)
Q Consensus 732 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~ 810 (901)
.....++.|++++|+|+...+..| ...+|++|++++ |.++.+.+..|+++++|+
T Consensus 151 ------------------------~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 151 ------------------------GLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp ------------------------TSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred ------------------------hcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 012457899999999996555544 456899999985 667766667899999999
Q ss_pred EEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccc
Q 041976 811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQED 859 (901)
Q Consensus 811 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~ 859 (901)
+|||++|+|+...+..|.+++ .|.+.++.--..+|.-..+..+...
T Consensus 206 ~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 206 ILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp EEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred hhhcCCCCcCccChhhhccch---HhhhccCCCcCcCCCchhCcChhhC
Confidence 999999999977666665554 5555455444577764444444433
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.5e-18 Score=174.05 Aligned_cols=174 Identities=21% Similarity=0.229 Sum_probs=145.8
Q ss_pred eeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976 530 YLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609 (901)
Q Consensus 530 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 609 (901)
.++++++.+.......++++++|++++|++++..+..+..+++|++|++++|.+++..+..+..+. +|++|++++|+++
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcCC
Confidence 444455555444444466788888888888877777788999999999999999855444556665 9999999999999
Q ss_pred ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976 610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689 (901)
Q Consensus 610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 689 (901)
+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------- 161 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------- 161 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------
Confidence 887778899999999999999999888888999999999999999999888888899999999999999876
Q ss_pred CCCCCCCcEEEcCCCccccCCcHH
Q 041976 690 KESFPKLRILDLSINNFSGYLPER 713 (901)
Q Consensus 690 ~~~l~~L~~L~Ls~n~l~~~~p~~ 713 (901)
..+++|+.|+++.|+++|.+|..
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred -cCCCCHHHHHHHHHhCCceeecc
Confidence 34678999999999999999964
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=4.3e-18 Score=170.68 Aligned_cols=180 Identities=22% Similarity=0.208 Sum_probs=149.5
Q ss_pred ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS 300 (901)
Q Consensus 221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 300 (901)
+.++++++.++.+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56777777888887665 3589999999999887666678889999999999999987766678889999999999999
Q ss_pred CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC
Q 041976 301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF 379 (901)
Q Consensus 301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 379 (901)
+++..+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---- 163 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---- 163 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----
Confidence 9877666 67889999999999999877777788899999999999999877777788899999999999977643
Q ss_pred CCCCCCEEEccCccCCCCCchhhhcccc
Q 041976 380 PSKSLQNIYLSNNRLQGSIPSSIFELVN 407 (901)
Q Consensus 380 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 407 (901)
++.|+.|+++.|.++|.+|.+++.++.
T Consensus 164 -~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 -CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -CCCHHHHHHHHHhCCceeeccCccccC
Confidence 467888888888888888888776654
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=2.7e-18 Score=196.57 Aligned_cols=188 Identities=23% Similarity=0.329 Sum_probs=136.8
Q ss_pred cCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCc
Q 041976 108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFP 187 (901)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p 187 (901)
+|++|++++|.+++ +|..+. ++|++|+|++|.++ .+| ..+ ++|++|++++|.+++ +|
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l--------------~~L~~L~Ls~N~l~~-ip 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNLP--PQITVLEITQNALI-SLP---ELP--------------ASLEYLDACDNRLST-LP 116 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCCC--TTCSEEECCSSCCS-CCC---CCC--------------TTCCEEECCSSCCSC-CC
T ss_pred CccEEEeCCCCCCc--cCHhHc--CCCCEEECcCCCCc-ccc---ccc--------------CCCCEEEccCCCCCC-cc
Confidence 66666666666655 555442 56666666666655 444 223 555555555555544 33
Q ss_pred cccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCC
Q 041976 188 INIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQL 267 (901)
Q Consensus 188 ~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 267 (901)
. +.. +|++|++++|.++.+|. .+++|++|++++|.+++ +|. .+++|
T Consensus 117 ~-l~~--------------------------~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L 162 (571)
T 3cvr_A 117 E-LPA--------------------------SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSL 162 (571)
T ss_dssp C-CCT--------------------------TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred h-hhc--------------------------CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCc
Confidence 3 322 55555566666666666 67899999999999986 665 57899
Q ss_pred CEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCC-------CEEECCCCCCCCCCCccccCCcCCcE
Q 041976 268 TLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQV-------SFFDLSNNQLAGPIPSHGSRLQNLVL 340 (901)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~ 340 (901)
++|++++|.+++ +|. |. ++|++|++++|.++.. |.+.. +| +.|++++|.++ .+|..+..+++|+.
T Consensus 163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l-p~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL-PAVPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234 (571)
T ss_dssp CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC-CCCC----------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch-hhHHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence 999999999996 676 66 8999999999999954 44443 67 99999999999 58888888999999
Q ss_pred EECcCCcCcccCChhhcCCC
Q 041976 341 IRLNNNSFSGTIPSWLFSLP 360 (901)
Q Consensus 341 L~L~~n~l~~~~~~~l~~l~ 360 (901)
|++++|.+++.+|..+..++
T Consensus 235 L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 235 IILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EECCSSSCCHHHHHHHHHHH
T ss_pred EEeeCCcCCCcCHHHHHHhh
Confidence 99999999999998877654
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.2e-17 Score=193.38 Aligned_cols=172 Identities=22% Similarity=0.324 Sum_probs=85.1
Q ss_pred cccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcC
Q 041976 103 LFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL 182 (901)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~ 182 (901)
+..+++|++|++++|.+.. ++ .++.+++|++|+|++|.+.+..| +..+ ++|++|+|++|.+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l--------------~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNL--------------KNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGC--------------TTCCEEECCSSCC
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccC--------------CCCCEEECcCCCC
Confidence 3455555555555555544 22 35555555555555555543222 4444 5555555555555
Q ss_pred CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976 183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262 (901)
Q Consensus 183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 262 (901)
.+ + ..+..+++|++|+|++| .+..+ +.+..+++|+.|+|++|.+.+. ..+.
T Consensus 100 ~~-l-~~l~~l~~L~~L~Ls~N------------------------~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~ 150 (605)
T 1m9s_A 100 KD-L-SSLKDLKKLKSLSLEHN------------------------GISDI-NGLVHLPQLESLYLGNNKITDI--TVLS 150 (605)
T ss_dssp CC-C-TTSTTCTTCCEEECTTS------------------------CCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGG
T ss_pred CC-C-hhhccCCCCCEEEecCC------------------------CCCCC-ccccCCCccCEEECCCCccCCc--hhhc
Confidence 43 1 23444555555555554 44443 2344455555555555555432 3444
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCC
Q 041976 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLA 325 (901)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 325 (901)
.+++|+.|+|++|.+++..| +..+++|++|+|++|.+.+. +.+..+++|+.|++++|.+.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEE
T ss_pred ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCc
Confidence 55555555555555544333 44555555555555555432 33445555555555555544
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.9e-17 Score=172.65 Aligned_cols=174 Identities=21% Similarity=0.314 Sum_probs=102.3
Q ss_pred ccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc
Q 041976 102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI 181 (901)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~ 181 (901)
.+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+..| ++.+ ++|++|++++|.
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l--------------~~L~~L~l~~n~ 101 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANL--------------KNLGWLFLDENK 101 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTC--------------TTCCEEECCSSC
T ss_pred chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccC--------------CCCCEEECCCCc
Confidence 34567777777777777765 33 36677777777777777664322 5555 667777777776
Q ss_pred CCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccc
Q 041976 182 LQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261 (901)
Q Consensus 182 ~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l 261 (901)
+.+ +..+..+++|++|++++| .+. .+ +.+..+++|++|++++|.+.+. ..+
T Consensus 102 l~~--~~~l~~l~~L~~L~L~~n-~i~-----------------------~~-~~l~~l~~L~~L~l~~n~l~~~--~~l 152 (291)
T 1h6t_A 102 VKD--LSSLKDLKKLKSLSLEHN-GIS-----------------------DI-NGLVHLPQLESLYLGNNKITDI--TVL 152 (291)
T ss_dssp CCC--GGGGTTCTTCCEEECTTS-CCC-----------------------CC-GGGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred CCC--ChhhccCCCCCEEECCCC-cCC-----------------------CC-hhhcCCCCCCEEEccCCcCCcc--hhh
Confidence 654 223666666666666666 443 33 2345555555555555555543 345
Q ss_pred cCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC
Q 041976 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG 326 (901)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 326 (901)
..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+++|+.|++++|++..
T Consensus 153 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccC
Confidence 555566666666665554333 55566666666666655542 335556666666666665543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=164.20 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=92.7
Q ss_pred CCEEECCCCcCcccCCc-chhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeC
Q 041976 573 LDVLDLSNNRLNGTIPE-CIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDI 651 (901)
Q Consensus 573 L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 651 (901)
+++|++++|.+++..|. .+..+. +|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45666666666544332 234443 6666666666666666666667777777777777776666666777777777777
Q ss_pred CCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHH
Q 041976 652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLE 716 (901)
Q Consensus 652 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 716 (901)
++|++.+..|..|..+++|++|+|++|++.+..+... ..+++|+.|++++|++.+..+..++.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~l~ 175 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAWLG 175 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHHHH
Confidence 7777777666667777777777777777766555443 56777777777777777766655543
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=6.3e-17 Score=163.29 Aligned_cols=140 Identities=20% Similarity=0.241 Sum_probs=65.0
Q ss_pred CCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeC
Q 041976 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDI 651 (901)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 651 (901)
.+++|++++|.+++..+..+..+. +|++|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 344444444444432222333333 4444444444444444444444444444444444444443344444455555555
Q ss_pred CCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHH
Q 041976 652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF 714 (901)
Q Consensus 652 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 714 (901)
++|++.+..|..|..+++|++|+|++|++.+..+... ..+++|+.|++++|++.....-.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccHH
Confidence 5555544444445555555555555555544333222 345555555666665554443333
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.2e-17 Score=180.54 Aligned_cols=177 Identities=26% Similarity=0.305 Sum_probs=113.7
Q ss_pred CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCcc-CCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFA-ESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652 (901)
Q Consensus 574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 652 (901)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..|. .+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46777777776 5665443 3677788888887777777676 77777788887777777777777777777777777
Q ss_pred CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCccc
Q 041976 653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLR 732 (901)
Q Consensus 653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~ 732 (901)
+|++....+..|.++++|++|+|++|++.+..+... ..+++|+.|+|++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~------------------------- 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS------------------------- 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC-------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC-------------------------
Confidence 777776666666666666666666666554333222 33444444444444443
Q ss_pred ccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhh---hccCCCCeEeCCCCcCCCCCCccccCCCC-
Q 041976 733 YLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVI---GKLHSLRLLNLSHNHFTGQIPSSLGNLAK- 808 (901)
Q Consensus 733 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~- 808 (901)
+..+..| ..+++|++|+|++|+|++..+..|..++.
T Consensus 150 ----------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 150 ----------------------------------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp ----------------------------------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred ----------------------------------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence 2222222 45677777777777777666666777665
Q ss_pred -CCEEeCCCCccCC
Q 041976 809 -LESLDLSSNNVAG 821 (901)
Q Consensus 809 -L~~L~Ls~N~l~~ 821 (901)
++.|+|++|.+..
T Consensus 190 ~l~~l~l~~N~~~C 203 (361)
T 2xot_A 190 VKNGLYLHNNPLEC 203 (361)
T ss_dssp HHTTEECCSSCEEC
T ss_pred hcceEEecCCCccC
Confidence 3677777777764
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=8.8e-17 Score=162.24 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=130.5
Q ss_pred ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS 300 (901)
Q Consensus 221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 300 (901)
+.+++++++++.+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 577888888888888765 689999999999987777788899999999999999998888899999999999999999
Q ss_pred CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976 301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373 (901)
Q Consensus 301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 373 (901)
++...+. +..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9876666 678899999999999998888888999999999999999998877777888888888888888765
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=4.6e-17 Score=172.09 Aligned_cols=170 Identities=24% Similarity=0.299 Sum_probs=86.2
Q ss_pred CCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEE
Q 041976 191 FHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLL 270 (901)
Q Consensus 191 ~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 270 (901)
..+++|++|++++| .+.. ++.+..+++|++|++++|.++.++. +..+++|++|++++|.+.+ + ..+..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~-~i~~-~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKS-VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTS-CCCC-CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred hhcCcccEEEccCC-Cccc-ChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence 34666777777766 4432 2444555555555555555555544 5555555555555555543 2 235555555555
Q ss_pred ECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcc
Q 041976 271 HLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG 350 (901)
Q Consensus 271 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 350 (901)
++++|.+++. ..+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 5555555532 2345555555555555555433 334445555555555555543322 4444555555555554443
Q ss_pred cCChhhcCCCCCcEEEccCCcc
Q 041976 351 TIPSWLFSLPLLEYVRLSDNQL 372 (901)
Q Consensus 351 ~~~~~l~~l~~L~~L~L~~n~l 372 (901)
. + .+..+++|+.|++++|.+
T Consensus 193 l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEEEE
T ss_pred C-h-hhccCCCCCEEECcCCcc
Confidence 2 2 244444444444444444
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.7e-16 Score=160.16 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=140.0
Q ss_pred CceeeccCccccCCCCCCCCCCcEEEccCCccccccc-cccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCC
Q 041976 528 LGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEII-HSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNN 606 (901)
Q Consensus 528 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n 606 (901)
-+.+++++|.+.......+..+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+. +|++|++++|
T Consensus 13 ~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCC
Confidence 3689999999988665667889999999999998755 4588999999999999999977776788776 9999999999
Q ss_pred cccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCccc
Q 041976 607 RLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS 683 (901)
Q Consensus 607 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 683 (901)
++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999998754
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=9.9e-17 Score=185.84 Aligned_cols=169 Identities=25% Similarity=0.307 Sum_probs=124.1
Q ss_pred CeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCccccccccccc
Q 041976 81 GNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTV 160 (901)
Q Consensus 81 ~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~ 160 (901)
.+++.|+++++.+... + .+..+++|++|+|++|.+.+ ++. +..+++|++|+|++|.+.+ +| .+..+
T Consensus 43 ~~L~~L~l~~n~i~~l-~---~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l----- 108 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDL----- 108 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T---TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTC-----
T ss_pred CCCCEEECcCCCCCCC-h---HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCC-Ch-hhccC-----
Confidence 4678899999887753 2 68899999999999999988 444 9999999999999999974 34 67777
Q ss_pred chhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCC
Q 041976 161 VLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNL 240 (901)
Q Consensus 161 ~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l 240 (901)
++|++|+|++|.+.+. ..+..+++|+.|+|++| .+.+. + .+..+
T Consensus 109 ---------~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~l-~-----------------------~l~~l 152 (605)
T 1m9s_A 109 ---------KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNN-KITDI-T-----------------------VLSRL 152 (605)
T ss_dssp ---------TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSS-CCCCC-G-----------------------GGGSC
T ss_pred ---------CCCCEEEecCCCCCCC--ccccCCCccCEEECCCC-ccCCc-h-----------------------hhccc
Confidence 9999999999999863 45788888888888888 55543 3 45555
Q ss_pred CCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcc
Q 041976 241 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFG 303 (901)
Q Consensus 241 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 303 (901)
++|++|+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 566666666666554433 55666666666666666543 245666666666666666654
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=8.2e-19 Score=202.13 Aligned_cols=215 Identities=17% Similarity=0.189 Sum_probs=104.3
Q ss_pred ccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEE-cCCCcC
Q 041976 104 FHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLS-LSDCIL 182 (901)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~-Ls~~~~ 182 (901)
...++|+.|+|++|.+.. +|+.+++|++|+.|++++|.....+|..+..++..+..+..+.++ ++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~--Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV--LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHHh--hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhccc
Confidence 457788888888887764 788888888888888866641111111111111111122222222 5566665 343322
Q ss_pred CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976 183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262 (901)
Q Consensus 183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 262 (901)
. .|+.+.+++| .+... + ...|++|++++|.++.+|. ++.+++|++|++++|.+. .+|..++
T Consensus 423 ~-----------~L~~l~l~~n-~i~~l-~----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 423 D-----------DLRSKFLLEN-SVLKM-E----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp H-----------HHHHHHHHHH-HHHHH-H----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred c-----------hhhhhhhhcc-ccccc-C----ccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhh
Confidence 1 1111111111 11100 0 0124445555555555544 555555555555555555 4455555
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccC-CC-CCCCCCCCEEECCCCCCCCCCCc---cccCCcC
Q 041976 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI-PD-IFNLTQVSFFDLSNNQLAGPIPS---HGSRLQN 337 (901)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~ 337 (901)
++++|++|++++|.+++ +| .++.+++|++|++++|.+++.. |. +..+++|+.|++++|.+++..|. .+..+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 55555555555555553 34 4555555555555555555543 33 55555555555555555543221 1223555
Q ss_pred CcEEE
Q 041976 338 LVLIR 342 (901)
Q Consensus 338 L~~L~ 342 (901)
|+.|+
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 66554
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=2e-18 Score=205.38 Aligned_cols=220 Identities=20% Similarity=0.148 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCC-CCCCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCccccc
Q 041976 27 CPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKK-DTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFH 105 (901)
Q Consensus 27 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~-~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~ 105 (901)
..+.++++|+++........ +..-..|.. .+..+.|.++.++ ++++++++|.++.+.... . .
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~~-~--~--- 191 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSK---------TAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEAN-Q--A--- 191 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHH---------TTC------------------------------------------------
T ss_pred ccccchhhhhhhhhhccccc---------CcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcch-h--h---
Confidence 45678899999998764322 123455754 3456789998886 478999999988876532 2 2
Q ss_pred CccCceEeCCCCCCCCC--------cCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEc
Q 041976 106 LLHLQTLNLSHNDFDYS--------EISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSL 177 (901)
Q Consensus 106 l~~L~~L~Ls~n~~~~~--------~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~L 177 (901)
.++.++|+.+.+.+. ..+..+..+++|++|+|++|.+. .+|..+..+ ++|++|+|
T Consensus 192 --~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l--------------~~L~~L~L 254 (727)
T 4b8c_D 192 --LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKY--------------DFLTRLYL 254 (727)
T ss_dssp --------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC--------------CSCSCCBC
T ss_pred --HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCC--------------CCCCEEEe
Confidence 234444444443331 13455666666666666666665 566655555 66666666
Q ss_pred CCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCC
Q 041976 178 SDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPV 257 (901)
Q Consensus 178 s~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~ 257 (901)
++|.++ .+|..++++++|++|+|++| .++ .+|..++.+++|++|+|++|.+. .+
T Consensus 255 s~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~-----------------------~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 255 NGNSLT-ELPAEIKNLSNLRVLDLSHN-RLT-----------------------SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TTSCCS-CCCGGGGGGTTCCEEECTTS-CCS-----------------------SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred eCCcCc-ccChhhhCCCCCCEEeCcCC-cCC-----------------------ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 666665 55555555555555555555 333 33466666666666666666665 55
Q ss_pred CccccCCCCCCEEECCCCcCCCCCCccccCCCC-CCEEEccCCcCcccCC
Q 041976 258 PASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQ-LTYLDLSSNSFFGEIP 306 (901)
Q Consensus 258 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~~ 306 (901)
|..|+++++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 666666666666666666666666655543211 1224556666655444
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=5e-16 Score=157.85 Aligned_cols=151 Identities=22% Similarity=0.198 Sum_probs=123.8
Q ss_pred cceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCC
Q 041976 220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSN 299 (901)
Q Consensus 220 L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 299 (901)
.+.++++++.+..+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567888888888887665 78999999999998887888888899999999999987666667788889999999999
Q ss_pred cCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976 300 SFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373 (901)
Q Consensus 300 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 373 (901)
++++..+. +..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88877666 677888888888888888 67788888888888888888888766667777777887777777665
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4e-16 Score=158.58 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=73.3
Q ss_pred eeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976 530 YLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609 (901)
Q Consensus 530 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 609 (901)
.++++++.+.......+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 23 ~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~------------------------- 77 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG------------------------- 77 (229)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------
T ss_pred EeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-------------------------
Confidence 3444444433333333344555555555555544555555555555555555554
Q ss_pred ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976 610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689 (901)
Q Consensus 610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 689 (901)
...+..|..+++|++|+|++|++++..+..|..+++|++|++++|++. .+|..+..+++|++|++++|++.+..+..
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~-- 154 (229)
T 3e6j_A 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA-- 154 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT--
T ss_pred CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH--
Confidence 333334444444444444444444444444444444444555444444 23444444555555555555554332221
Q ss_pred CCCCCCCcEEEcCCCccccCCc
Q 041976 690 KESFPKLRILDLSINNFSGYLP 711 (901)
Q Consensus 690 ~~~l~~L~~L~Ls~n~l~~~~p 711 (901)
+..+++|+.|++++|++.+..+
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTBG
T ss_pred HhCCCCCCEEEeeCCCccCCcc
Confidence 2445556666666666655443
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=175.01 Aligned_cols=177 Identities=23% Similarity=0.162 Sum_probs=117.2
Q ss_pred eeccCccccCCCCCCCCCCcEEEccCCccccccccccc-cCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSIC-DIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609 (901)
Q Consensus 531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 609 (901)
++++++.+.......+..++.|++++|++++..+..+. .+++|++|++++|.+++..+..+..+. +|++|+|++|+++
T Consensus 23 l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLH 101 (361)
T ss_dssp EECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC
T ss_pred EEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCC
Confidence 33444444333223345566777777777766666666 777788888888887765555666665 7888888888877
Q ss_pred ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccc---cCCCCCcEEEccCCcCcccCCC
Q 041976 610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWL---GNLPELQVLVLRSNKFHGSVRE 686 (901)
Q Consensus 610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~~~~~~~~ 686 (901)
+..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+ ..+++|++|+|++|++.+..+.
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 7777777777888888888888877777777777888888888887777655555 4577777777777777643221
Q ss_pred CCCCCCCCC--CcEEEcCCCccccCC
Q 041976 687 FEPKESFPK--LRILDLSINNFSGYL 710 (901)
Q Consensus 687 ~~~~~~l~~--L~~L~Ls~n~l~~~~ 710 (901)
. +..++. ++.|++++|++....
T Consensus 182 ~--~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 182 D--LQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp H--HHHSCHHHHTTEECCSSCEECCH
T ss_pred H--hhhccHhhcceEEecCCCccCCc
Confidence 1 123333 366777777776543
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.3e-16 Score=165.71 Aligned_cols=168 Identities=20% Similarity=0.293 Sum_probs=95.0
Q ss_pred cCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCC
Q 041976 105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG 184 (901)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~ 184 (901)
.+++++.++++++.+++ ++ .+..+++|++|++++|.+. .+| .+..+ ++|++|++++|.+++
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l--------------~~L~~L~L~~N~i~~ 77 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFF--------------TNLKELHLSHNQISD 77 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGC--------------TTCCEEECCSSCCCC
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhC--------------CCCCEEECCCCccCC
Confidence 46667777778777766 33 4677788888888888776 455 56666 778888888887775
Q ss_pred CCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCC
Q 041976 185 NFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNL 264 (901)
Q Consensus 185 ~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 264 (901)
..+ +.++++|++|++++| .+++ +|.... ++|++|++++|.++.++ .+..+++|++|++++|++++. + .+..+
T Consensus 78 ~~~--l~~l~~L~~L~L~~N-~l~~-l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l 149 (263)
T 1xeu_A 78 LSP--LKDLTKLEELSVNRN-RLKN-LNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFL 149 (263)
T ss_dssp CGG--GTTCSSCCEEECCSS-CCSC-CTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGC
T ss_pred Chh--hccCCCCCEEECCCC-ccCC-cCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccC
Confidence 544 777777777777777 5554 332222 44555555555554442 344444444444444444432 1 34444
Q ss_pred CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcC
Q 041976 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSF 301 (901)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 301 (901)
++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 4444444444444432 2334444444444444433
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.7e-19 Score=205.04 Aligned_cols=205 Identities=19% Similarity=0.127 Sum_probs=160.1
Q ss_pred ccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc-------------CCCCCccccCCCC
Q 041976 128 FSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI-------------LQGNFPINIFHLP 194 (901)
Q Consensus 128 l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~-------------~~~~~p~~l~~l~ 194 (901)
+..+++|+.|+|++|.+. .+|.+++++ ++|+.|++++|. ..+..|..++.++
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l--------------~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~ 409 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESC--------------KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHH--------------HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHH--------------HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH
Confidence 367899999999999986 889999998 899999997775 5566777778888
Q ss_pred CCCEEe-CCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECC
Q 041976 195 NPQMIR-LSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLM 273 (901)
Q Consensus 195 ~L~~L~-L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~ 273 (901)
+|+.|+ ++.| . +..|+.+.+++|.+..+|. ..|++|++++|.+++ +|. ++.+++|++|+++
T Consensus 410 ~L~~L~~l~~n-~----------~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls 471 (567)
T 1dce_A 410 TLKAVDPMRAA-Y----------LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLS 471 (567)
T ss_dssp HHHHHCGGGHH-H----------HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECC
T ss_pred hcccCcchhhc-c----------cchhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecC
Confidence 888887 5554 2 2346666677777666543 258889999998886 665 8888999999999
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCC-CccccCCcCCcEEECcCCcCcccC
Q 041976 274 HNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPI-PSHGSRLQNLVLIRLNNNSFSGTI 352 (901)
Q Consensus 274 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 352 (901)
+|.++ .+|..++.+++|++|+|++|.+++ +|.+..+++|++|++++|.+++.. |..++.+++|++|++++|.+++..
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 99888 778888899999999999998887 457888888888888888888766 888888888888888888887654
Q ss_pred Ch---hhcCCCCCcEEEc
Q 041976 353 PS---WLFSLPLLEYVRL 367 (901)
Q Consensus 353 ~~---~l~~l~~L~~L~L 367 (901)
|. .+..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 42 2334677777753
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=1.8e-16 Score=157.18 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=54.1
Q ss_pred cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCC
Q 041976 236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVS 315 (901)
Q Consensus 236 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~ 315 (901)
.+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..|..++.+++|++|++++|...+.++.+..+++|+
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~ 162 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK 162 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCC
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCC
Confidence 45555555555555555555455555555555555555555555445555555555555555554222223344444444
Q ss_pred EEECCCCCCCCCCCccccCCcCCcEEECcCCcC
Q 041976 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSF 348 (901)
Q Consensus 316 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 348 (901)
+|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 44444444442 11 334444444444444443
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.7e-16 Score=154.90 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=96.2
Q ss_pred CCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976 217 TSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL 296 (901)
Q Consensus 217 ~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (901)
+++|++|++++|.+..+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 345556666666666665 5677777777777777554 2346667777777777777777666666777777777777
Q ss_pred cCCcCcccCCC-CCCCCCCCEEECCCCC-CCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976 297 SSNSFFGEIPD-IFNLTQVSFFDLSNNQ-LAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373 (901)
Q Consensus 297 s~n~l~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 373 (901)
++|.+++..+. +..+++|++|++++|. +. .++ .+..+++|++|++++|.+++. + .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 77777654444 6667777777777776 43 333 466666777777777766642 2 4566666666666666554
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.8e-16 Score=156.22 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=95.1
Q ss_pred ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976 758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN 837 (901)
Q Consensus 758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 837 (901)
+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..|+++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 57788999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccCCCCCCCCCCcccccccCCcCCCCCC
Q 041976 838 LSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFP 871 (901)
Q Consensus 838 Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~ 871 (901)
|++|++.+..|.......+....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999876532111112233445566667655
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.1e-15 Score=158.73 Aligned_cols=166 Identities=23% Similarity=0.234 Sum_probs=94.1
Q ss_pred CcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccC
Q 041976 219 PIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSS 298 (901)
Q Consensus 219 ~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 298 (901)
++..++++.+.++.++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 3445555555555554 45566666666666666653 33 45666666666666666664333 66666666666666
Q ss_pred CcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCC
Q 041976 299 NSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE 378 (901)
Q Consensus 299 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 378 (901)
|++++. +.+.. ++|++|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++.+....
T Consensus 95 N~l~~l-~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~~~l 168 (263)
T 1xeu_A 95 NRLKNL-NGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNTGGL 168 (263)
T ss_dssp SCCSCC-TTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBCTTS
T ss_pred CccCCc-Ccccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcchHHh
Confidence 666643 23222 6666666666666542 2456666666666666666543 2 455666666666666665544222
Q ss_pred CCCCCCCEEEccCccCC
Q 041976 379 FPSKSLQNIYLSNNRLQ 395 (901)
Q Consensus 379 ~~~~~L~~L~L~~n~l~ 395 (901)
..+++|+.|++++|.++
T Consensus 169 ~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTCCCCCEEEEEEEEEE
T ss_pred ccCCCCCEEeCCCCccc
Confidence 24445555555555544
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.6e-15 Score=163.53 Aligned_cols=267 Identities=14% Similarity=0.173 Sum_probs=169.8
Q ss_pred CCcEEEccCCcccccccccccc-CCCCCEEECCCCcCc--ccCCcchhcCCCCccEEECCCCcccccCCcCccC------
Q 041976 548 SLRVLLISNNQFTGEIIHSICD-IIALDVLDLSNNRLN--GTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE------ 618 (901)
Q Consensus 548 ~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------ 618 (901)
+++.|.++++ +.......+.. +++|++|||++|++. ...+. ..+ .+..+.+..|. +.+.+|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~-~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYP-NGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSG-GGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccc-ccccccccccc---cCHHHhcccccccc
Confidence 4555555543 22222223333 677888888888776 21111 111 23445555553 33456777
Q ss_pred --CCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccC--CCCCCCCCCC
Q 041976 619 --SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV--REFEPKESFP 694 (901)
Q Consensus 619 --l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~~~~~~~~l~ 694 (901)
+++|+.|+|.+ .++.+.+.+|.+|++|+++++++|.+..+.+.+|.++.++..+....+...... -....+..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88888888888 777777777888888888888888887777777877777777666553221000 0111223344
Q ss_pred CCc-EEEcCCCccccCCcHHHHHh---hHhhhcccccCCcccccCccceeceeEEeecchhH-HHhhhccceeEEEcccc
Q 041976 695 KLR-ILDLSINNFSGYLPERFLEN---LNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI-EMQKILTVFTTIDFSSN 769 (901)
Q Consensus 695 ~L~-~L~Ls~n~l~~~~p~~~~~~---l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~N 769 (901)
.|+ .+++... +.++..++.. ..++..+...+. +..... .+...+++|++++|++|
T Consensus 177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~-----------------l~~~~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK-----------------LDNADFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC-----------------CCHHHHHHHHHHCTTCCEEECTTB
T ss_pred ccceeEEecCC---CcHHHHHhhcccCccccceEEEeee-----------------ecHHHHHHHHHhcCCCeEEECCCC
Confidence 555 4555432 2334333322 111111111100 011111 12234789999999999
Q ss_pred ccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCC-EEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976 770 GFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE-SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845 (901)
Q Consensus 770 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 845 (901)
+++...+..|.++++|++|+|++| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 999877888999999999999998 8878888999999999 999998 8888888999999999999999999874
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.4e-14 Score=142.61 Aligned_cols=136 Identities=24% Similarity=0.291 Sum_probs=103.1
Q ss_pred CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCc-CccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG-TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652 (901)
Q Consensus 574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 652 (901)
+++++++|.++ .+|..+. +++++|++++|++++..+. .|..+++|++|+|++|++++..|..|.++++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56777777775 6665443 2778888888888766654 47778888888888888887777788888888888888
Q ss_pred CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976 653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL 715 (901)
Q Consensus 653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 715 (901)
+|++++..+..|.++++|++|++++|++.+..+... ..+++|++|++++|++.+..+..++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHH
Confidence 888888777778888888888888888877666544 6678888888888888887775544
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=5.5e-16 Score=184.45 Aligned_cols=120 Identities=25% Similarity=0.291 Sum_probs=55.9
Q ss_pred CccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCC
Q 041976 234 PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQ 313 (901)
Q Consensus 234 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 313 (901)
|+.+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++..+..++++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 344444444555555554444 34444444455555555555544 4444445555555555555554422112444555
Q ss_pred CCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhh
Q 041976 314 VSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWL 356 (901)
Q Consensus 314 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 356 (901)
|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 555555555444 344445555555555555555555444444
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.3e-13 Score=135.68 Aligned_cols=137 Identities=21% Similarity=0.268 Sum_probs=95.7
Q ss_pred CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC
Q 041976 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653 (901)
Q Consensus 574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 653 (901)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|+|++|++++..+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45667777766 5565432 36777777777776 4556777777777777777777777777777777777777777
Q ss_pred CcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHh
Q 041976 654 IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLEN 717 (901)
Q Consensus 654 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 717 (901)
|++++..+..|..+++|++|+|++|++....+.. +..+++|+.|++++|++.+.....++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA--FNDLSALSHLAIGANPLYCDCNMQWLSD 149 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh--hhcCccccEEEeCCCCeecCCcCHHHHH
Confidence 7777777777777777777777777776544432 2567788888888888876555444443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=2.3e-14 Score=138.00 Aligned_cols=132 Identities=23% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCCcEEEccCCccc-cccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976 547 SSLRVLLISNNQFT-GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL 625 (901)
Q Consensus 547 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 625 (901)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+. +|++|++++|++++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45666666666665 44555555666666666666666533 3444443 56666666666655455555555666666
Q ss_pred EccCCcccccC-CccccCCCcccEEeCCCCcCccCcc---ccccCCCCCcEEEccCCcCc
Q 041976 626 NLNNNELGGAI-PQSLVNCTKVEVLDIGNIKINDAFP---YWLGNLPELQVLVLRSNKFH 681 (901)
Q Consensus 626 ~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~~~ 681 (901)
++++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666655432 1455555666666666666555444 34555555555555555543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=2.5e-14 Score=137.74 Aligned_cols=127 Identities=20% Similarity=0.143 Sum_probs=61.5
Q ss_pred cceeecCCCCCc--cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcc
Q 041976 220 IEYLDVSETSFS--ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLS 297 (901)
Q Consensus 220 L~~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 297 (901)
|++|++++|.+. .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 344444444443 4445555555666666666655543 445555555555555555554455555555555555555
Q ss_pred CCcCcccC--CCCCCCCCCCEEECCCCCCCCCCC---ccccCCcCCcEEECcCCcC
Q 041976 298 SNSFFGEI--PDIFNLTQVSFFDLSNNQLAGPIP---SHGSRLQNLVLIRLNNNSF 348 (901)
Q Consensus 298 ~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l 348 (901)
+|.+++.. +.+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55554432 124444444444444444443222 2334444444444444433
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=135.78 Aligned_cols=128 Identities=22% Similarity=0.289 Sum_probs=102.5
Q ss_pred cEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccC
Q 041976 550 RVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNN 629 (901)
Q Consensus 550 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 629 (901)
+.+++++|.++. +|..+ .+.|++|++++|.++ .+|..+..+. +|+.|++++|.+++..+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 456677777663 44433 257888888888887 6777777776 888888888888887778888888888888888
Q ss_pred CcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcc
Q 041976 630 NELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHG 682 (901)
Q Consensus 630 N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 682 (901)
|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|++.+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888888888888889999999888888777778888899999999998764
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=3.1e-14 Score=133.96 Aligned_cols=126 Identities=19% Similarity=0.146 Sum_probs=70.0
Q ss_pred CCccEEEcCCCcCC-CCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCcc-CCccccCCCCcCEEE
Q 041976 170 SSLTSLSLSDCILQ-GNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSE-LPDSIGNLKLLGRLM 247 (901)
Q Consensus 170 ~~L~~L~Ls~~~~~-~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~ 247 (901)
++|++|++++|.+. +.+|..+..+++|++|++++| .+++. +.+..+++|++|++++|.++. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 455555556666666666666 44433 333444444444444444444 445555566666666
Q ss_pred CCCCCCccC-CCccccCCCCCCEEECCCCcCCCCCC---ccccCCCCCCEEEcc
Q 041976 248 LGYSQFVGP-VPASLGNLTQLTLLHLMHNNFSGHIP---SSLSNLVQLTYLDLS 297 (901)
Q Consensus 248 L~~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls 297 (901)
+++|.+.+. .+..++.+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23555666666666666666654443 345556666666554
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=1.1e-13 Score=149.11 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=62.4
Q ss_pred CccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCccc-EEeCCCCcCccCccccccCCCCCcEEEc
Q 041976 597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVE-VLDIGNIKINDAFPYWLGNLPELQVLVL 675 (901)
Q Consensus 597 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L 675 (901)
+|+.+++++|+++.+.+.+|.++.+|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 6666666666666666666666666666666666 5555556666666666 666665 555555666666666666666
Q ss_pred cCCcCcccCCCCCCCCCCCCCcEEE
Q 041976 676 RSNKFHGSVREFEPKESFPKLRILD 700 (901)
Q Consensus 676 ~~n~~~~~~~~~~~~~~l~~L~~L~ 700 (901)
++|.+....... +.++++|+.++
T Consensus 305 ~~n~i~~I~~~a--F~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDEL--FGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTTT--TCTTCCCCEEE
T ss_pred CCCccCccchhh--hcCCcchhhhc
Confidence 666665433322 35566666654
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=3.9e-14 Score=133.32 Aligned_cols=125 Identities=21% Similarity=0.243 Sum_probs=59.3
Q ss_pred CcCEEECCCCCCc-cCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEEC
Q 041976 242 LLGRLMLGYSQFV-GPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDL 319 (901)
Q Consensus 242 ~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l 319 (901)
+|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|. +..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444443 33344344444444444444444432 3344444444444444444443333 223444555555
Q ss_pred CCCCCCCC-CCccccCCcCCcEEECcCCcCcccCC---hhhcCCCCCcEEEcc
Q 041976 320 SNNQLAGP-IPSHGSRLQNLVLIRLNNNSFSGTIP---SWLFSLPLLEYVRLS 368 (901)
Q Consensus 320 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~ 368 (901)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55554431 22455555666666666666654444 355666666666654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=4e-13 Score=130.48 Aligned_cols=130 Identities=25% Similarity=0.237 Sum_probs=82.2
Q ss_pred cceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCC
Q 041976 220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSN 299 (901)
Q Consensus 220 L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 299 (901)
.+.+++++++++.+|..+. ++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3566666777777665443 56777777777776555555666777777777777776555555666677777777777
Q ss_pred cCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCccc
Q 041976 300 SFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351 (901)
Q Consensus 300 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 351 (901)
.+++..+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 66655554 45566666666666666644444455566666666666655543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=4.1e-13 Score=130.40 Aligned_cols=113 Identities=20% Similarity=0.256 Sum_probs=73.1
Q ss_pred CCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEe
Q 041976 571 IALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLD 650 (901)
Q Consensus 571 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 650 (901)
++|++|++++|.+++..+..+..+. +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4556666666666543333344443 666666666666655555566677777777777777766666666777777777
Q ss_pred CCCCcCccCccccccCCCCCcEEEccCCcCcccC
Q 041976 651 IGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV 684 (901)
Q Consensus 651 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 684 (901)
+++|++++..+..+..+++|++|++++|++.+..
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777777666655667777777777777776543
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=7.7e-13 Score=145.53 Aligned_cols=239 Identities=10% Similarity=0.086 Sum_probs=147.0
Q ss_pred CcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEcc
Q 041976 549 LRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLN 628 (901)
Q Consensus 549 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 628 (901)
++.+.+.+ .++......|.++ +|+.+.+.++ ++..-..+|.+ . +|+.+.+.. .++.+.+.+|.+|.+|+.+++.
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-S-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-C-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-C-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 34444432 3444445556654 5777777665 44233333433 3 677777775 5666666777777788888887
Q ss_pred CCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcccc
Q 041976 629 NNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG 708 (901)
Q Consensus 629 ~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 708 (901)
+|+++.+....|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ +. .+... .+.. .+|+.+.+.++ +.
T Consensus 189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~-aF~~-~~L~~i~lp~~-i~- 260 (401)
T 4fdw_A 189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQE-AFRE-SGITTVKLPNG-VT- 260 (401)
T ss_dssp TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTT-TTTT-CCCSEEEEETT-CC-
T ss_pred CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccc-cccc-CCccEEEeCCC-cc-
Confidence 7777766666666 577777777743 66666677777777777777764 22 12211 1233 56666666332 22
Q ss_pred CCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccc-----cccchhhhccC
Q 041976 709 YLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFD-----GEISQVIGKLH 783 (901)
Q Consensus 709 ~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~l~~l~ 783 (901)
.++...|.+ +++|+.+++.+|.+. ...+..|.+++
T Consensus 261 ~I~~~aF~~----------------------------------------c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 261 NIASRAFYY----------------------------------------CPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp EECTTTTTT----------------------------------------CTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred EEChhHhhC----------------------------------------CCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 222222222 455666666665543 34456677777
Q ss_pred CCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc
Q 041976 784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844 (901)
Q Consensus 784 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 844 (901)
+|+.++|. +.++.+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+.
T Consensus 301 ~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 301 KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 77777777 4466666677777777777777544 666667777777 7777777777665
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=4.1e-13 Score=129.11 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=85.0
Q ss_pred ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976 758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN 837 (901)
Q Consensus 758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 837 (901)
.+.+++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 36688999999999999999999999999999999999998888899999999999999999998888899999999999
Q ss_pred CCCCcCccCCC
Q 041976 838 LSHNRLDGPIP 848 (901)
Q Consensus 838 Ls~N~l~g~iP 848 (901)
|++|++.+..+
T Consensus 109 L~~N~~~c~c~ 119 (170)
T 3g39_A 109 LLNNPWDCACS 119 (170)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCCCCCch
Confidence 99999987654
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=1.6e-11 Score=134.93 Aligned_cols=91 Identities=10% Similarity=0.037 Sum_probs=54.6
Q ss_pred cCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCC
Q 041976 611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK 690 (901)
Q Consensus 611 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 690 (901)
+.+.+|.+|++|+.+++. +.++.+...+|.+|++|+.+.+..+ +..+...+|.++ +|+.+++.+|......... +
T Consensus 291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~--F 365 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV--W 365 (401)
T ss_dssp ECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS--C
T ss_pred ECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc--c
Confidence 445666667777777776 3466555666777777777777443 555556666666 7777777776654322221 2
Q ss_pred CCC-CCCcEEEcCCCcc
Q 041976 691 ESF-PKLRILDLSINNF 706 (901)
Q Consensus 691 ~~l-~~L~~L~Ls~n~l 706 (901)
..+ .+++.|.+..+.+
T Consensus 366 ~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 366 YGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCSCTTCCEEEECGGGH
T ss_pred cCCCCCccEEEeCHHHH
Confidence 334 3567777766543
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.2e-12 Score=126.26 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=83.4
Q ss_pred ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976 758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN 837 (901)
Q Consensus 758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 837 (901)
.+.++.|+|++|++++.+|..|+++++|++|+|++|+|+++.+..|..+++|+.|+|++|+|++..+..|..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 36788999999999999999999999999999999999998888899999999999999999988887899999999999
Q ss_pred CCCCcCccCC
Q 041976 838 LSHNRLDGPI 847 (901)
Q Consensus 838 Ls~N~l~g~i 847 (901)
|++|++....
T Consensus 112 L~~N~~~c~~ 121 (174)
T 2r9u_A 112 LYNNPWDCEC 121 (174)
T ss_dssp CCSSCBCTTB
T ss_pred eCCCCccccc
Confidence 9999998643
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=7.6e-15 Score=145.52 Aligned_cols=84 Identities=29% Similarity=0.303 Sum_probs=66.0
Q ss_pred ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCC-ccccCCCCCCEEeCCCCccCCCCCcC----------
Q 041976 758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIP-SSLGNLAKLESLDLSSNNVAGKIPKP---------- 826 (901)
Q Consensus 758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~~p~~---------- 826 (901)
+++|++|++++|++++ +| .++.+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 3567888888888886 44 58888889999999999886443 57888899999999999988776653
Q ss_pred CcCCCCCCeeeCCCCcCcc
Q 041976 827 LTSLTSLSVLNLSHNRLDG 845 (901)
Q Consensus 827 l~~l~~L~~L~Ls~N~l~g 845 (901)
+..+++|++|| +|+++.
T Consensus 170 ~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHCSSCSEEC--CGGGTT
T ss_pred HHhCCCcEEEC--CcccCH
Confidence 77888899887 677663
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=6.4e-13 Score=128.79 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCCCcCEEECCCCCCccCCCccccCCC-CCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCE
Q 041976 239 NLKLLGRLMLGYSQFVGPVPASLGNLT-QLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSF 316 (901)
Q Consensus 239 ~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~ 316 (901)
++.+|++|++++|.+.. +|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+. +..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34444444444444442 222 22222 555555555555433 3455555555555555555544434 245555666
Q ss_pred EECCCCCCCCCCCc--cccCCcCCcEEECcCCcCcccCCh----hhcCCCCCcEEEccCCccc
Q 041976 317 FDLSNNQLAGPIPS--HGSRLQNLVLIRLNNNSFSGTIPS----WLFSLPLLEYVRLSDNQLS 373 (901)
Q Consensus 317 L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~ 373 (901)
|++++|.+. .+|. .+..+++|++|++++|.++. +|. .+..+++|+.|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666554 3343 55666666666666666653 333 3666777777777766544
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=6.6e-11 Score=130.82 Aligned_cols=329 Identities=13% Similarity=0.091 Sum_probs=161.4
Q ss_pred CCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCC
Q 041976 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRL 335 (901)
Q Consensus 257 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l 335 (901)
-..+|.++++|+.+.+..+ ++.+-..+|.++.+|+.+++..+ ++..... +.++..|+.+.+..+ +......+|..+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 3456777888888888643 55455566777888888877654 3322222 556666666555433 222233344444
Q ss_pred cCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceeccc
Q 041976 336 QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDS 415 (901)
Q Consensus 336 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 415 (901)
..+........ ......+|.++++|+.+.+..+. .......|.++.+|+.+.+..
T Consensus 140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-----------------------~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-----------------------ETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-----------------------CEECTTTTTTCTTCCBCCCCT
T ss_pred cccccccCccc--cccchhhhcccCCCcEEecCCcc-----------------------ceeccccccCCCCceEEEcCC
Confidence 33222221111 11222345555555555543321 112233455566666666654
Q ss_pred CcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCC-hhhccCCCCCEEeCCCCccccc
Q 041976 416 NNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP-RFLRTQDELSYLDLSENKIDGQ 494 (901)
Q Consensus 416 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~ls~n~l~~~ 494 (901)
+ ++.+. ...|.++..|+.+.+..+...... .......|+.+.+... ++.+. ..+..+..++.+.+..+... .
T Consensus 195 ~-~~~I~-~~~F~~~~~L~~i~~~~~~~~i~~---~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i 267 (394)
T 4fs7_A 195 N-LKIIR-DYCFAECILLENMEFPNSLYYLGD---FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-I 267 (394)
T ss_dssp T-CCEEC-TTTTTTCTTCCBCCCCTTCCEECT---TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-E
T ss_pred C-ceEeC-chhhccccccceeecCCCceEeeh---hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-e
Confidence 4 22222 245566666665555443222111 0112233444433221 11121 13334444444444433211 1
Q ss_pred CChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCC
Q 041976 495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALD 574 (901)
Q Consensus 495 ~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 574 (901)
....| .. +..++.+......+ ....+..+.+|+
T Consensus 268 ~~~~F--~~------------------------------------------~~~l~~~~~~~~~i---~~~~F~~~~~L~ 300 (394)
T 4fs7_A 268 GGSLF--YN------------------------------------------CSGLKKVIYGSVIV---PEKTFYGCSSLT 300 (394)
T ss_dssp CSCTT--TT------------------------------------------CTTCCEEEECSSEE---CTTTTTTCTTCC
T ss_pred ecccc--cc------------------------------------------ccccceeccCceee---cccccccccccc
Confidence 11111 11 22233333332221 123445566666
Q ss_pred EEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCC
Q 041976 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNI 654 (901)
Q Consensus 575 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n 654 (901)
.+.+.++ +...-..++..+. +|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++..+
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6666544 3322233444444 6777777543 55566677888888888888766 66666677888888888887654
Q ss_pred cCccCccccccCCCCCcEE
Q 041976 655 KINDAFPYWLGNLPELQVL 673 (901)
Q Consensus 655 ~l~~~~~~~l~~l~~L~~L 673 (901)
+. .+..+|.++++|+.+
T Consensus 377 -~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 -LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -GG-GGGGGBCTTCEEEEE
T ss_pred -CE-EhhheecCCCCCcEE
Confidence 22 224567777777654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.8e-12 Score=125.57 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=98.9
Q ss_pred ccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCc
Q 041976 566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTK 645 (901)
Q Consensus 566 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 645 (901)
.+.++.+|++|++++|.++ .+|. +....++|+.|++++|.+++. ..|..+++|++|++++|++++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3456677788888888877 4443 444445788888888888765 56788888888888888888665555688888
Q ss_pred ccEEeCCCCcCccCcc-ccccCCCCCcEEEccCCcCcccCCCC--CCCCCCCCCcEEEcCCCccc
Q 041976 646 VEVLDIGNIKINDAFP-YWLGNLPELQVLVLRSNKFHGSVREF--EPKESFPKLRILDLSINNFS 707 (901)
Q Consensus 646 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~--~~~~~l~~L~~L~Ls~n~l~ 707 (901)
|++|++++|++....+ ..+..+++|++|++++|++... +.. ..+..+++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888855332 2677888888888888888632 221 01256788889998888764
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=6.5e-12 Score=120.65 Aligned_cols=105 Identities=24% Similarity=0.295 Sum_probs=71.7
Q ss_pred CCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652 (901)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 652 (901)
.+++++++|.++ .+|..+. ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456777777776 4665442 377777777777777767777777777777777777776666666777777777777
Q ss_pred CCcCccCccccccCCCCCcEEEccCCcCc
Q 041976 653 NIKINDAFPYWLGNLPELQVLVLRSNKFH 681 (901)
Q Consensus 653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 681 (901)
+|++++..+..|..+++|++|+|++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77776666655666666666666665554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=4.1e-15 Score=147.50 Aligned_cols=127 Identities=23% Similarity=0.240 Sum_probs=71.4
Q ss_pred cccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCC
Q 041976 127 GFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPS 206 (901)
Q Consensus 127 ~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~ 206 (901)
.++.+++|++|+|++|.+.+ +| .+..+ ++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l--------------~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N-- 103 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGM--------------ENLRILSLGRNLIK-KIENLDAVADTLEELWISYN-- 103 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHH--------------TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEE--
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccC--------------CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCC--
Confidence 56666666666666666554 44 55555 56666666666555 34444444445555555544
Q ss_pred CCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCC-ccccCCCCCCEEECCCCcCCCCCCcc-
Q 041976 207 LAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVP-ASLGNLTQLTLLHLMHNNFSGHIPSS- 284 (901)
Q Consensus 207 l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~- 284 (901)
.++.+| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..
T Consensus 104 ----------------------~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 104 ----------------------QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp ----------------------ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred ----------------------cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 333333 35556666666666666553211 34566666666666666665544432
Q ss_pred ---------ccCCCCCCEEE
Q 041976 285 ---------LSNLVQLTYLD 295 (901)
Q Consensus 285 ---------l~~l~~L~~L~ 295 (901)
+..+++|++||
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC
T ss_pred chHHHHHHHHHhCCCcEEEC
Confidence 56677777765
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.3e-11 Score=118.84 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=73.1
Q ss_pred CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC
Q 041976 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653 (901)
Q Consensus 574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 653 (901)
+.+++++|.+. .+|..+. ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777775 6666543 3777888888887777777777777777777777777766666667777777777777
Q ss_pred CcCccCccccccCCCCCcEEEccCCcCc
Q 041976 654 IKINDAFPYWLGNLPELQVLVLRSNKFH 681 (901)
Q Consensus 654 n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 681 (901)
|++.+..+..|..+++|++|+|++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7777665555666666666666666554
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=3.5e-10 Score=125.01 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=94.2
Q ss_pred cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCC
Q 041976 236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVS 315 (901)
Q Consensus 236 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~ 315 (901)
.+.++++|+.+.+..+. ...-..+|.++.+|+.+++..+ ++......|.++..|+.+.+..+... ..........|+
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~ 233 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVK 233 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCC
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCc
Confidence 45566666666665432 2223345556666666666544 33333445666666666655544322 111233445566
Q ss_pred EEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCC
Q 041976 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQ 395 (901)
Q Consensus 316 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~ 395 (901)
.+.+.... +......+..+..|+.+.+..+... .....+..+..++.+......+. ......+.+|+.+.+..+ ++
T Consensus 234 ~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 234 NIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp EEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CC
T ss_pred eEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-cccccccccccccccccc-cc
Confidence 66654332 2223344556666666666554332 34445555666666555443221 111124455555555433 33
Q ss_pred CCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccC
Q 041976 396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440 (901)
Q Consensus 396 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 440 (901)
.....+|.++.+|+.+++..+ ++.+.. .+|.++.+|+.+.+..
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPL 352 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCT
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECc
Confidence 333344555555555555432 333322 4455555555555443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=1.8e-12 Score=141.22 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=85.9
Q ss_pred CccCEEEccCCcccccCCccccC-----CCcccEEeCCCCcCccCcccccc-CCCCCcEEEccCCcCcccCCCCCC--C-
Q 041976 620 NWLRSLNLNNNELGGAIPQSLVN-----CTKVEVLDIGNIKINDAFPYWLG-NLPELQVLVLRSNKFHGSVREFEP--K- 690 (901)
Q Consensus 620 ~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~--~- 690 (901)
+.|+.|+|++|.++......+.. .++|++|++++|.+++.....+. .+++|++|+|++|.+......... .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46788888888887543333322 26788888888877654333332 345666777777666432111100 0
Q ss_pred CCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccc
Q 041976 691 ESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG 770 (901)
Q Consensus 691 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 770 (901)
...++|++|+|++|.++..-...+... ....+.|++|||++|.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------------------------L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEG-------------------------------------LAGNTSVTHLSLLHTG 194 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHH-------------------------------------HHTCSSCCEEECTTSS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHH-------------------------------------HhcCCCcCEEeCCCCC
Confidence 123456666666665542111111000 0113456666666666
Q ss_pred cccc----cchhhhccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeCCCCccCCC
Q 041976 771 FDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSNNVAGK 822 (901)
Q Consensus 771 l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~ 822 (901)
+++. ++..+...++|++|+|++|.|+.. ++..+...++|++|||++|.|+..
T Consensus 195 l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 195 LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 6542 244455556666666666666542 223333445666666666666543
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=1.5e-10 Score=125.75 Aligned_cols=87 Identities=22% Similarity=0.188 Sum_probs=67.9
Q ss_pred ccceeEEEccc-cccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCee
Q 041976 758 LTVFTTIDFSS-NGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVL 836 (901)
Q Consensus 758 l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 836 (901)
+++|+.|+|++ |.|++..+..|+++++|++|+|++|+|++.+|..|++|++|+.|||++|+|++..+..|..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 45678888885 888877777788888888888888888887777888888888888888888876666666665 8888
Q ss_pred eCCCCcCcc
Q 041976 837 NLSHNRLDG 845 (901)
Q Consensus 837 ~Ls~N~l~g 845 (901)
+|++|++..
T Consensus 109 ~l~~N~~~c 117 (347)
T 2ifg_A 109 VLSGNPLHC 117 (347)
T ss_dssp ECCSSCCCC
T ss_pred EeeCCCccC
Confidence 888888764
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.06 E-value=1e-08 Score=113.05 Aligned_cols=138 Identities=12% Similarity=0.162 Sum_probs=92.5
Q ss_pred cccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCc
Q 041976 559 FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQ 638 (901)
Q Consensus 559 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 638 (901)
+.......|.++..|+.+.+.++... .-..++..+. .|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred ceEcccceeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 33344567778888888888766543 3334455554 88888886 4566677788999999999999764 6667777
Q ss_pred cccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcc
Q 041976 639 SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF 706 (901)
Q Consensus 639 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 706 (901)
+|.+|++|+.+.+..+ ++.+...+|.+|++|+.+++.++.... ..+....+|+.+.+..+.+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence 8999999999999754 667777888999999999998876432 1224456777777766543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=5.7e-12 Score=137.23 Aligned_cols=61 Identities=26% Similarity=0.219 Sum_probs=25.6
Q ss_pred CccCEEEccCCccccc----CCccccCCCcccEEeCCCCcCccCc----cccccCCCCCcEEEccCCcC
Q 041976 620 NWLRSLNLNNNELGGA----IPQSLVNCTKVEVLDIGNIKINDAF----PYWLGNLPELQVLVLRSNKF 680 (901)
Q Consensus 620 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~ 680 (901)
++|++|+|++|.++.. ++..+..+++|++|+|++|.+.+.. +..+...++|++|+|++|.+
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 3444444444444321 1222234444444444444443321 22333344444555554444
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=2e-08 Score=110.72 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=67.4
Q ss_pred ccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCC
Q 041976 564 IHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNC 643 (901)
Q Consensus 564 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 643 (901)
...|.+++.|+.+.+.. .++..-..+|..+. +|+.+++..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|
T Consensus 281 ~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C 356 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSS-RITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNC 356 (394)
T ss_dssp TTTTTTCTTCCEEECCT-TCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTC
T ss_pred CcccccccccccccCCC-cccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCC
Confidence 34556667777777753 33322223444444 7888888654 55566778888888988888654 666667788889
Q ss_pred CcccEEeCCCCcCccCccccccCCCCCcEEEccCCcC
Q 041976 644 TKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKF 680 (901)
Q Consensus 644 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 680 (901)
++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 357 ~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 357 TALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999999888875432 3566778888887776653
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=1.4e-09 Score=117.96 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=59.3
Q ss_pred EECCCC-cCcccCCcchhcCCCCccEEECCC-CcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC
Q 041976 576 LDLSNN-RLNGTIPECIGNFSPSLSVLDLRN-NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653 (901)
Q Consensus 576 L~Ls~n-~l~~~~p~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 653 (901)
++.+++ .++ .+|. +..+. +|+.|+|++ |.++++.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 456665 555 4555 55444 566666664 666655555666666666666666666666666666666666666666
Q ss_pred CcCccCccccccCCCCCcEEEccCCcCc
Q 041976 654 IKINDAFPYWLGNLPELQVLVLRSNKFH 681 (901)
Q Consensus 654 n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 681 (901)
|++++..+..+..++ |+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666555444444433 555555555543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=7.2e-09 Score=111.58 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=21.3
Q ss_pred ccceeEEEccccccccc----cchhhhccCCCCeEeCCCCcCCC
Q 041976 758 LTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTG 797 (901)
Q Consensus 758 l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~ 797 (901)
++.|++|||+.|.+++. ++..+..+++|+.|+|++|.++.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 34556666666666543 22333445566666666665553
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.68 E-value=1.8e-06 Score=94.62 Aligned_cols=37 Identities=5% Similarity=0.126 Sum_probs=19.6
Q ss_pred ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccC
Q 041976 261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSS 298 (901)
Q Consensus 261 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 298 (901)
+....+|+.+.+.. .++.+-..+|.++.+|+.+.+..
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC
Confidence 33445566666653 23333444566666666666643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=2.6e-08 Score=107.26 Aligned_cols=142 Identities=17% Similarity=0.273 Sum_probs=74.6
Q ss_pred CChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhh--cccccCceeccc--CcCCCccch---
Q 041976 352 IPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF--ELVNLTDLQLDS--NNFSGIAEP--- 424 (901)
Q Consensus 352 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~~~--- 424 (901)
+...+..+|+|+.|++++|.-.. .+....++|+.|++..+.++......+. .+++|+.|+|+. +...+....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34555677778888887763111 1223466777777777766544333443 567777777743 111111000
Q ss_pred -hhh--hhcCCCcEEEccCCccccccccccC--CCCCCccEEecCCcCCCC-----CChhhccCCCCCEEeCCCCccccc
Q 041976 425 -YMF--AKLIKLKYLYLSHNSLSLGNTFKID--SPFPKFSYLSLSACNISA-----FPRFLRTQDELSYLDLSENKIDGQ 494 (901)
Q Consensus 425 -~~l--~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~-----lp~~l~~~~~L~~L~ls~n~l~~~ 494 (901)
..+ ..+++|++|++.+|.+.......+. ..+++|++|+++.|.++. ++..+..+++|+.|++++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 011 2356777777776665532211111 135566666666665542 233334556666666666665543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=5.3e-06 Score=90.79 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=54.6
Q ss_pred cccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCC
Q 041976 565 HSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCT 644 (901)
Q Consensus 565 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 644 (901)
..+.++..|+.+.+..+ ++..-...+..+. +|+.+.+..+ +..+....|.++.+|+.+.+.++.++.+...+|.+|.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 34445555555555443 2212222233333 5555555432 3334445566666666666666655555555666666
Q ss_pred cccEEeCCCCcCccCccccccCCCCCcEEEcc
Q 041976 645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLR 676 (901)
Q Consensus 645 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 676 (901)
+|+.+.+..+ ++.+...+|.++.+|+.+.+.
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 6666666533 444444555555555555543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=3.6e-07 Score=92.96 Aligned_cols=67 Identities=27% Similarity=0.348 Sum_probs=43.7
Q ss_pred hccCCCCeEeCCCCcCCC--CCCccccCCCCCCEEeCCCCccCCCCCcCCcCCC--CCCeeeCCCCcCccCCC
Q 041976 780 GKLHSLRLLNLSHNHFTG--QIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT--SLSVLNLSHNRLDGPIP 848 (901)
Q Consensus 780 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~g~iP 848 (901)
.++++|++|+|++|+|++ .+|..++.+++|+.|+|++|+|++. +.+..+. +|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 456677777777777776 3345566677777777777777654 3333333 67777777777776665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=2.7e-07 Score=89.46 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=47.4
Q ss_pred cceeEEEccccccccc----cchhhhccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeC--CCCccCCC----CC
Q 041976 759 TVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDL--SSNNVAGK----IP 824 (901)
Q Consensus 759 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~L--s~N~l~~~----~p 824 (901)
+.|++|+|++|.+... +...+...++|++|+|++|.|+.. +...+...++|++|+| ++|.|... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3455555555555432 233344455666666666666542 2344555566666666 66666543 22
Q ss_pred cCCcCCCCCCeeeCCCCcCc
Q 041976 825 KPLTSLTSLSVLNLSHNRLD 844 (901)
Q Consensus 825 ~~l~~l~~L~~L~Ls~N~l~ 844 (901)
+.+...++|++|+|++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 33444566777777777654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=7.4e-07 Score=90.65 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=67.0
Q ss_pred hccceeEEEcccccccc--ccchhhhccCCCCeEeCCCCcCCCCCCccccCCC--CCCEEeCCCCccCCCCCc-------
Q 041976 757 ILTVFTTIDFSSNGFDG--EISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLA--KLESLDLSSNNVAGKIPK------- 825 (901)
Q Consensus 757 ~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~--~L~~L~Ls~N~l~~~~p~------- 825 (901)
.++.|++|+|++|+|++ .+|..++.+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 36889999999999998 5678889999999999999999976 3455555 999999999999987763
Q ss_pred CCcCCCCCCeee
Q 041976 826 PLTSLTSLSVLN 837 (901)
Q Consensus 826 ~l~~l~~L~~L~ 837 (901)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467789999886
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=4e-07 Score=88.20 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=45.0
Q ss_pred ccccccCCCCCEEECCCC-cCccc----CCcchhcCCCCccEEECCCCcccccC----CcCccCCCccCEEEccCCcccc
Q 041976 564 IHSICDIIALDVLDLSNN-RLNGT----IPECIGNFSPSLSVLDLRNNRLNGSI----PGTFAESNWLRSLNLNNNELGG 634 (901)
Q Consensus 564 ~~~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~ 634 (901)
...+...+.|++|++++| .+... +...+.... +|++|+|++|.+.... ...+...++|++|+|++|.|+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 344556677777777777 66532 112222222 5666666666654321 1223333445555555555543
Q ss_pred c----CCccccCCCcccEEeC--CCCcCc
Q 041976 635 A----IPQSLVNCTKVEVLDI--GNIKIN 657 (901)
Q Consensus 635 ~----~~~~l~~l~~L~~L~l--~~n~l~ 657 (901)
. +...+...++|++|++ ++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2 2233444444555555 444443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=1.7e-06 Score=81.43 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=60.6
Q ss_pred cCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCc-CCCCCCcccccccccccchhhcccCCCCccEEEcCCCc-CCCC
Q 041976 108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSN-INCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI-LQGN 185 (901)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~-~~~~ 185 (901)
.|++||++++.++...+ ..+.++++|++|+|++|. +++.--..++.+ .+.+++|++|++++|. +++.
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~----------~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQL----------ENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTC----------HHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhc----------ccccCCCCEEEcCCCCcCCHH
Confidence 57777777777665533 346788888888888885 443222222221 0012478999999984 7776
Q ss_pred CccccCCCCCCCEEeCCCCCCCCc
Q 041976 186 FPINIFHLPNPQMIRLSQNPSLAG 209 (901)
Q Consensus 186 ~p~~l~~l~~L~~L~L~~n~~l~~ 209 (901)
--..+.++++|++|++++|+.++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 667788899999999999866553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=5.1e-06 Score=78.10 Aligned_cols=83 Identities=11% Similarity=0.106 Sum_probs=46.5
Q ss_pred CccEEECCCCcccccCCcCccCCCccCEEEccCCc-ccccCCccccCC----CcccEEeCCCCc-CccCccccccCCCCC
Q 041976 597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNE-LGGAIPQSLVNC----TKVEVLDIGNIK-INDAFPYWLGNLPEL 670 (901)
Q Consensus 597 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~L 670 (901)
.|+.||+++|.++...-..+..+++|++|+|++|. ++...-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666776666655444445666667777777664 543333334332 356666666653 555444445555555
Q ss_pred cEEEccCCc
Q 041976 671 QVLVLRSNK 679 (901)
Q Consensus 671 ~~L~L~~n~ 679 (901)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.04 E-value=0.001 Score=59.55 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=29.4
Q ss_pred eEeCCCCcCC-CCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc
Q 041976 787 LLNLSHNHFT-GQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844 (901)
Q Consensus 787 ~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 844 (901)
.++.+++.++ ..+|..+. .+|+.|||++|+|+.+.+..|..+++|++|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23343332 24555666666665555555555566666666666553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.74 E-value=0.00056 Score=65.49 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=61.8
Q ss_pred cceeEEEccccccccc----cchhhhccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeCCCCcc---CC----CC
Q 041976 759 TVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSNNV---AG----KI 823 (901)
Q Consensus 759 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l---~~----~~ 823 (901)
+.|+.|+|++|+|... +.+.+..-+.|++|+|++|.|+.. +-+.+..-+.|++|+|++|.. .. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 5688999999998753 455666778999999999999853 234455567899999987633 32 13
Q ss_pred CcCCcCCCCCCeeeCCCCcC
Q 041976 824 PKPLTSLTSLSVLNLSHNRL 843 (901)
Q Consensus 824 p~~l~~l~~L~~L~Ls~N~l 843 (901)
.+.+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 34566668899999988764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0033 Score=56.12 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=48.3
Q ss_pred eEEEccccccc-cccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCC
Q 041976 762 TTIDFSSNGFD-GEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821 (901)
Q Consensus 762 ~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~ 821 (901)
..++.++++++ ..+|..+ -.+|++|+|++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36888999987 3555443 3479999999999999888899999999999999998863
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.35 E-value=0.001 Score=63.63 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=43.8
Q ss_pred CccEEECCCCcccccCCc----CccCCCccCEEEccCCccccc----CCccccCCCcccEEeCCCC---cCccC----cc
Q 041976 597 SLSVLDLRNNRLNGSIPG----TFAESNWLRSLNLNNNELGGA----IPQSLVNCTKVEVLDIGNI---KINDA----FP 661 (901)
Q Consensus 597 ~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n---~l~~~----~~ 661 (901)
.|+.|+|++|.|...... .+..-+.|++|+|++|.|... +.+.+..-+.|++|+|++| .+... +.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 555555555555432222 222334566666666666532 2234455566777777654 23321 23
Q ss_pred ccccCCCCCcEEEccCCcC
Q 041976 662 YWLGNLPELQVLVLRSNKF 680 (901)
Q Consensus 662 ~~l~~l~~L~~L~L~~n~~ 680 (901)
..+..-+.|+.|+++.|.+
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 3344556777777776654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.28 E-value=20 Score=29.47 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=24.3
Q ss_pred cccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC
Q 041976 607 RLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653 (901)
Q Consensus 607 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 653 (901)
.++.+...+|.+|.+|+.+.|-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444555666666666665543 3334445555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.24 E-value=20 Score=29.52 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=38.4
Q ss_pred CCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCC
Q 041976 629 NNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSN 678 (901)
Q Consensus 629 ~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 678 (901)
+..++.+...+|.+|++|+.+.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566677788999999999999864 56667778889999998888764
Done!