BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041977
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 29/98 (29%)
Query: 28 KTCNVERDITVTLTDSGICPDSE-------------------------VESKIIGARYY- 61
+ VE +I V + D+GI P+S KIIGAR Y
Sbjct: 16 RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYH 75
Query: 62 ---PSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFF 96
P S RD HGT T+ST G V + +
Sbjct: 76 IGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLY 113
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 44 GIC-PDSEVES-----KIIGARYY--------PSSEAGNYTTRDIENHGTCTSSTTGGNE 89
GIC P ++ + K+IGA Y+ P+ + RD + HGT +S T GN
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115
Query: 90 VKDVSFF 96
K VS F
Sbjct: 116 AKGVSHF 122
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 113 LRYIKSYASAAGVA--VMTISIG----HAHSLNIRDESIYNDLKFC 152
L +KS A+A V V T S G H L + DES ++D++FC
Sbjct: 108 LGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFC 153
>pdb|2XI1|B Chain B, Crystal Structure Of The Hiv-1 Nef Sequenced From A
Patient's Sample
Length = 208
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 59 RYYPSSEAGNYTTRDIENHGTCTSS---TTGGNEVKDVSF 95
R P++E ++D+ HG TSS TT +E ++V F
Sbjct: 31 RAQPAAEGVGAASQDLGRHGALTSSNTDTTNADEEEEVGF 70
>pdb|2XI1|A Chain A, Crystal Structure Of The Hiv-1 Nef Sequenced From A
Patient's Sample
Length = 208
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 59 RYYPSSEAGNYTTRDIENHGTCTSS---TTGGNEVKDVSF 95
R P++E ++D+ HG TSS TT +E ++V F
Sbjct: 31 RAQPAAEGVGAASQDLGRHGALTSSNTDTTNADEEEEVGF 70
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 101 KVLKEVVFLWQELRYIKSYASAAGVAVMTISIGHAHSLN------IRDESIYNDL 149
K + ++V+ W IK Y + + + T+S HS + I+DES+YN+L
Sbjct: 221 KSIYDMVYYWPHYTPIK-YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNL 274
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 101 KVLKEVVFLWQELRYIKSYASAAGVAVMTISIGHAHSLN------IRDESIYNDL 149
K + ++V+ W IK Y + + + T+S HS + I+DES+YN+L
Sbjct: 221 KSIYDMVYYWPHYTPIK-YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNL 274
>pdb|2EEZ|A Chain A, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|C Chain C, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|D Chain D, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|E Chain E, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|F Chain F, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|G Chain G, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
Length = 369
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 34 RDITVTLTDSGICPDSEVESKIIGARYYPSSEAGNYTTRDI 74
R IT+T T++ I + +IGA P ++A TRD+
Sbjct: 212 RVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDM 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,717,941
Number of Sequences: 62578
Number of extensions: 177139
Number of successful extensions: 453
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 21
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)