BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041977
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1
Length = 749
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 34/98 (34%)
Query: 31 NVERDITVTLTDSGICPDSE--------------------------VESKIIGARYY--- 61
ERD+ + + D+GI PDSE +KIIGA+Y+
Sbjct: 134 KAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHD 193
Query: 62 ---PSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFF 96
P+ E + DI+ HGT TSST G V + S +
Sbjct: 194 GNVPAGEV--RSPIDIDGHGTHTSSTVAGVLVANASLY 229
>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1
Length = 731
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 29/98 (29%)
Query: 28 KTCNVERDITVTLTDSGICPDS-------------------------EVESKIIGARYY- 61
+ VE +I V + D+GI P+S KIIGAR Y
Sbjct: 126 RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYH 185
Query: 62 ---PSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFF 96
P S RD HGT T+ST G V + +
Sbjct: 186 IGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLY 223
>sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2
SV=1
Length = 775
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 19/66 (28%)
Query: 44 GICPDSEVES------KIIGARYY-------------PSSEAGNYTTRDIENHGTCTSST 84
GIC + E S K+IGAR++ P+ + RD HGT T+ST
Sbjct: 170 GICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTAST 229
Query: 85 TGGNEV 90
GG+ V
Sbjct: 230 VGGSSV 235
>sp|Q5F3I6|TM104_CHICK Transmembrane protein 104 OS=Gallus gallus GN=TMEM104 PE=2 SV=1
Length = 497
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 106 VVFLWQELRYIKSYASAAGVAVM--TISIGHAHSLNIRDESIYNDLKFCW 153
+++L+ +L YA+A V++M T +IG+ HS N+ D + YND CW
Sbjct: 155 IIYLYGDL---AIYAAAVPVSLMQVTCAIGN-HSCNVGDGTKYNDTDKCW 200
>sp|B8D6U7|PUR9_BUCAT Bifunctional purine biosynthesis protein PurH OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
GN=purH PE=3 SV=1
Length = 525
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 101 KVLKEVVFLWQELRYIKSYASAAGVAVMTISIGHAHSLNIRDESIYN 147
K LK+ +F WQ +++KS A G +TI IG I + N
Sbjct: 408 KELKDSIFCWQVAKFVKSNAIVYGSDEITIGIGAGQMSRIYSTKLAN 454
>sp|P57143|PUR9_BUCAI Bifunctional purine biosynthesis protein PurH OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=purH PE=3 SV=1
Length = 525
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 101 KVLKEVVFLWQELRYIKSYASAAGVAVMTISIGHAHSLNIRDESIYN 147
K LK+ +F WQ +++KS A G +TI IG I + N
Sbjct: 408 KELKDSIFCWQVAKFVKSNAIVYGSDEITIGIGAGQMSRIYSTKLAN 454
>sp|B8D8J3|PUR9_BUCA5 Bifunctional purine biosynthesis protein PurH OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain 5A)
GN=purH PE=3 SV=1
Length = 525
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 101 KVLKEVVFLWQELRYIKSYASAAGVAVMTISIGHAHSLNIRDESIYN 147
K LK+ +F WQ +++KS A G +TI IG I + N
Sbjct: 408 KELKDSIFCWQVAKFVKSNAIVYGSDEITIGIGAGQMSRIYSTKLAN 454
>sp|P05858|NEF_HV1RH Protein Nef OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=nef PE=3 SV=3
Length = 208
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 62 PSSEAGNYTTRDIENHGTCTSSTTGGN 88
P+++ +RD+E HGT TSS T N
Sbjct: 25 PAADGVGAASRDLEKHGTITSSNTAAN 51
>sp|Q0WVD6|ANM3_ARATH Probable protein arginine N-methyltransferase 3 OS=Arabidopsis
thaliana GN=PRMT3 PE=2 SV=1
Length = 601
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 60 YYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEVVFLWQELRYIKSY 119
+Y S + NY + + C S ++ KDV F WD K LK WQE + S+
Sbjct: 93 FYSSFKLINYIRSQVAEN-MCFSWKIEADDYKDVKFPWDEEKYLKP---FWQEDSLLYSF 148
Query: 120 A 120
A
Sbjct: 149 A 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,421,320
Number of Sequences: 539616
Number of extensions: 2147400
Number of successful extensions: 5240
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5233
Number of HSP's gapped (non-prelim): 18
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)