Query 041977
Match_columns 158
No_of_seqs 165 out of 1097
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 99.9 3.9E-27 8.5E-32 196.5 13.7 146 9-156 1-204 (307)
2 PTZ00262 subtilisin-like prote 99.9 2.4E-25 5.3E-30 201.7 10.0 134 16-157 296-464 (639)
3 cd07479 Peptidases_S8_SKI-1_li 99.9 8.6E-24 1.9E-28 173.2 9.1 101 27-135 1-110 (255)
4 cd07475 Peptidases_S8_C5a_Pept 99.9 5.7E-23 1.2E-27 173.3 10.4 132 25-157 1-177 (346)
5 cd07476 Peptidases_S8_thiazoli 99.9 1.2E-22 2.5E-27 167.9 10.2 126 26-157 2-139 (267)
6 cd07483 Peptidases_S8_Subtilis 99.9 1.5E-22 3.2E-27 168.6 10.0 120 34-156 1-171 (291)
7 cd07489 Peptidases_S8_5 Peptid 99.9 3.3E-22 7.2E-27 167.0 10.3 129 24-156 3-154 (312)
8 cd07485 Peptidases_S8_Fervidol 99.9 4.3E-22 9.4E-27 163.5 10.5 129 25-155 1-154 (273)
9 cd07484 Peptidases_S8_Thermita 99.9 1.3E-21 2.8E-26 158.9 10.7 127 22-157 17-154 (260)
10 cd07487 Peptidases_S8_1 Peptid 99.9 2.1E-21 4.5E-26 157.0 10.5 124 33-157 1-139 (264)
11 cd07494 Peptidases_S8_10 Pepti 99.9 2.9E-21 6.2E-26 161.9 10.9 122 23-157 10-146 (298)
12 cd07480 Peptidases_S8_12 Pepti 99.8 4E-21 8.7E-26 159.8 10.3 100 30-135 4-113 (297)
13 cd05562 Peptidases_S53_like Pe 99.8 2.7E-21 5.8E-26 160.6 8.8 111 31-155 2-121 (275)
14 cd07491 Peptidases_S8_7 Peptid 99.8 4.1E-21 9E-26 157.2 8.3 113 33-156 2-136 (247)
15 cd07493 Peptidases_S8_9 Peptid 99.8 2.6E-20 5.6E-25 152.0 11.7 117 35-156 1-147 (261)
16 cd07497 Peptidases_S8_14 Pepti 99.8 4.4E-21 9.4E-26 162.0 7.1 102 33-135 1-142 (311)
17 cd07474 Peptidases_S8_subtilis 99.8 2.7E-20 5.8E-25 153.3 11.4 121 33-156 1-149 (295)
18 cd07496 Peptidases_S8_13 Pepti 99.8 1.3E-20 2.8E-25 155.7 9.2 118 35-156 1-166 (285)
19 cd07498 Peptidases_S8_15 Pepti 99.8 3E-20 6.4E-25 149.3 9.7 115 36-154 1-127 (242)
20 cd07481 Peptidases_S8_Bacillop 99.8 5.5E-20 1.2E-24 150.4 10.9 103 33-137 1-132 (264)
21 cd04059 Peptidases_S8_Protein_ 99.8 2E-20 4.4E-25 154.4 7.8 113 22-135 27-149 (297)
22 cd04077 Peptidases_S8_PCSK9_Pr 99.8 7.8E-20 1.7E-24 148.3 10.7 114 26-155 17-145 (255)
23 cd07490 Peptidases_S8_6 Peptid 99.8 8.8E-20 1.9E-24 147.3 10.5 114 35-153 1-124 (254)
24 cd05561 Peptidases_S8_4 Peptid 99.8 4.3E-20 9.2E-25 150.0 8.6 108 36-157 1-121 (239)
25 cd07478 Peptidases_S8_CspA-lik 99.8 6.2E-20 1.4E-24 162.0 9.3 119 32-151 2-177 (455)
26 cd04842 Peptidases_S8_Kp43_pro 99.8 2.5E-19 5.5E-24 147.2 11.4 101 29-136 2-127 (293)
27 cd04843 Peptidases_S8_11 Pepti 99.8 1.1E-19 2.4E-24 151.1 9.2 124 23-156 4-142 (277)
28 cd07477 Peptidases_S8_Subtilis 99.8 2.8E-19 6E-24 142.0 9.7 114 35-156 1-124 (229)
29 cd07473 Peptidases_S8_Subtilis 99.8 2.8E-19 6E-24 144.8 9.4 114 34-148 2-144 (259)
30 cd07492 Peptidases_S8_8 Peptid 99.8 2.7E-19 5.8E-24 142.5 9.0 111 35-156 1-121 (222)
31 cd07482 Peptidases_S8_Lantibio 99.8 9.1E-19 2E-23 143.7 9.8 118 35-157 1-146 (294)
32 cd04848 Peptidases_S8_Autotran 99.8 2.8E-18 6.1E-23 137.8 9.3 103 32-136 1-115 (267)
33 cd04847 Peptidases_S8_Subtilis 99.8 1.8E-18 3.9E-23 143.3 7.3 96 37-136 2-114 (291)
34 cd04857 Peptidases_S8_Tripepti 99.7 1.1E-17 2.3E-22 146.4 11.6 64 72-136 182-256 (412)
35 PF00082 Peptidase_S8: Subtila 99.7 1.5E-17 3.2E-22 135.2 8.7 120 37-157 1-139 (282)
36 KOG1153 Subtilisin-related pro 99.7 2E-16 4.3E-21 138.0 8.7 106 32-154 217-342 (501)
37 cd00306 Peptidases_S8_S53 Pept 99.6 3.2E-14 7E-19 110.9 10.4 116 36-155 1-130 (241)
38 KOG4266 Subtilisin kexin isozy 99.5 9.2E-15 2E-19 132.0 7.6 119 23-156 190-317 (1033)
39 COG1404 AprE Subtilisin-like s 99.4 9.6E-13 2.1E-17 112.0 11.3 129 23-154 129-273 (508)
40 KOG1114 Tripeptidyl peptidase 99.3 1.2E-11 2.5E-16 115.8 10.5 83 74-157 309-402 (1304)
41 cd07488 Peptidases_S8_2 Peptid 99.1 1.2E-10 2.5E-15 95.7 4.9 104 39-154 5-120 (247)
42 KOG3526 Subtilisin-like propro 98.7 1.7E-08 3.6E-13 87.9 5.6 130 4-135 128-274 (629)
43 cd04056 Peptidases_S53 Peptida 95.9 0.018 3.9E-07 49.6 5.7 60 96-156 84-153 (361)
44 KOG3525 Subtilisin-like propro 94.5 0.086 1.9E-06 47.0 5.9 80 23-103 22-107 (431)
45 COG0299 PurN Folate-dependent 33.0 21 0.00046 28.8 1.0 45 2-48 98-146 (200)
46 COG2899 Uncharacterized protei 25.6 21 0.00046 30.6 -0.2 29 126-158 45-73 (346)
47 KOG1406 Peroxisomal 3-ketoacyl 25.1 60 0.0013 28.0 2.4 33 125-157 334-367 (408)
48 PF08344 TRP_2: Transient rece 23.1 54 0.0012 21.6 1.4 16 142-157 39-54 (63)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=3.9e-27 Score=196.55 Aligned_cols=146 Identities=27% Similarity=0.355 Sum_probs=112.2
Q ss_pred cccccc----ccccCCCCCcccccccCCCCCcEEEEeccccCCCCcC----------------------------CCcee
Q 041977 9 LQLHKR----DLGILYVSMDPLIKTCNVERDITVTLTDSGICPDSEV----------------------------ESKII 56 (158)
Q Consensus 9 ~~l~tt----~lg~~~~~~~~~W~~~~~G~GV~VaViDTGid~~hp~----------------------------~~~i~ 56 (158)
|+|||+ |||+.......+|....+|+||+|||||||||++||+ +.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 689999 9999875444467778899999999999999999998 24677
Q ss_pred eeEeCCCCC---------CCCCCCCCCCCCCccccccccCCccCC--------CceeeecccCCeeE--EecCc-----h
Q 041977 57 GARYYPSSE---------AGNYTTRDIENHGTCTSSTTGGNEVKD--------VSFFWDWGKVLKEV--VFLWQ-----E 112 (158)
Q Consensus 57 g~~~~~~~~---------~~~~~~~D~~GHGTHvAgiiag~~~~~--------~~~~G~vapg~~a~--kv~~~-----~ 112 (158)
+.++|.++. .+...+.|..||||||||||||+...+ ..+.| +||+++.. |+++. .
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~G-vAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASG-VAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEE-ECCCCeEEEEEEecCCCCccH
Confidence 777776531 124566889999999999999987542 23568 99999543 77754 5
Q ss_pred hHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhc
Q 041977 113 LRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 113 s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~ 156 (158)
++++++ +|++++++|||||||.... ..+.+.+..++.++.+.+
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~g 204 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAG 204 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCC
Confidence 678888 9999999999999998732 455677777776665544
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.92 E-value=2.4e-25 Score=201.71 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=99.0
Q ss_pred cccCCCCCcccccc--cCCCCCcEEEEeccccCCCCcCCC-ce------e-e----------------eEeCCCCCCCCC
Q 041977 16 LGILYVSMDPLIKT--CNVERDITVTLTDSGICPDSEVES-KI------I-G----------------ARYYPSSEAGNY 69 (158)
Q Consensus 16 lg~~~~~~~~~W~~--~~~G~GV~VaViDTGid~~hp~~~-~i------~-g----------------~~~~~~~~~~~~ 69 (158)
+||+....+.+|+. ..+|+||+|||||||||++||+.. ++ + | +++|.++ ..
T Consensus 296 WgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~vdd~~G~nfVd~---~~ 372 (639)
T PTZ00262 296 WGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGNVDDEYGANFVNN---DG 372 (639)
T ss_pred cCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCcccccccccccCC---CC
Confidence 34444445667764 347999999999999999999922 11 1 1 1122221 24
Q ss_pred CCCCCCCCCccccccccCCccCCCceeeecccCCee--EEecCc-----hhHHHHH--HHHHCCCcEEEEccCCCCCCCc
Q 041977 70 TTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKE--VVFLWQ-----ELRYIKS--YASAAGVAVMTISIGHAHSLNI 140 (158)
Q Consensus 70 ~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a--~kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~ 140 (158)
.|.|.+||||||||||||...++.++.| +||+++. .|+++. .++++.| ||++.|++|||||||+...
T Consensus 373 ~P~D~~GHGTHVAGIIAA~gnN~~Gi~G-VAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~~--- 448 (639)
T PTZ00262 373 GPMDDNYHGTHVSGIISAIGNNNIGIVG-VDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDEY--- 448 (639)
T ss_pred CCCCCCCcchHHHHHHhccccCCCceee-eecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCCc---
Confidence 5689999999999999998877788999 9999843 388764 6788888 9999999999999997632
Q ss_pred hHHHHHHHHHHHHHhcc
Q 041977 141 RDESIYNDLKFCWQLRF 157 (158)
Q Consensus 141 ~~d~i~~~~~~aw~~~~ 157 (158)
...+..++++|++.+.
T Consensus 449 -s~~l~~AV~~A~~kGI 464 (639)
T PTZ00262 449 -SGIFNESVKYLEEKGI 464 (639)
T ss_pred -cHHHHHHHHHHHHCCC
Confidence 3456777777777653
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.90 E-value=8.6e-24 Score=173.22 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=80.7
Q ss_pred ccccCCCCCcEEEEeccccCCCCcCCCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE
Q 041977 27 IKTCNVERDITVTLTDSGICPDSEVESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV 106 (158)
Q Consensus 27 W~~~~~G~GV~VaViDTGid~~hp~~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~ 106 (158)
|+.+.+|+||+||||||||+.+||+...++...+|... ....|..||||||||||+++.. +..| +||+++..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~~~~~~~----~~~~d~~gHGT~VAGiIa~~~~---~~~G-vAp~a~l~ 72 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKERTNWTNE----KTLDDGLGHGTFVAGVIASSRE---QCLG-FAPDAEIY 72 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccccccccCCC----CCCCCCCCcHHHHHHHHHccCC---Ccee-ECCCCEEE
Confidence 88999999999999999999999995444443444422 3456888999999999999753 3579 99999544
Q ss_pred --EecCc-----hhHHHHH--HHHHCCCcEEEEccCCC
Q 041977 107 --VFLWQ-----ELRYIKS--YASAAGVAVMTISIGHA 135 (158)
Q Consensus 107 --kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~ 135 (158)
|++.. .+.++.+ +|++++++|||||||..
T Consensus 73 ~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~ 110 (255)
T cd07479 73 IFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGP 110 (255)
T ss_pred EEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCC
Confidence 78754 3567777 99999999999999986
No 4
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.89 E-value=5.7e-23 Score=173.25 Aligned_cols=132 Identities=18% Similarity=0.200 Sum_probs=97.8
Q ss_pred ccccccC-CCCCcEEEEeccccCCCCcCC------------------------------CceeeeEeCCCCCCCCCCCCC
Q 041977 25 PLIKTCN-VERDITVTLTDSGICPDSEVE------------------------------SKIIGARYYPSSEAGNYTTRD 73 (158)
Q Consensus 25 ~~W~~~~-~G~GV~VaViDTGid~~hp~~------------------------------~~i~g~~~~~~~~~~~~~~~D 73 (158)
++|++.. +|+||+|+||||||+++||+. .+++..++|.++..+.....|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 4899987 899999999999999999971 122334455544333333457
Q ss_pred CCCCCccccccccCCccC---CCceeeecccCCeeE--EecC--c-----hhHHHHH--HHHHCCCcEEEEccCCCCCCC
Q 041977 74 IENHGTCTSSTTGGNEVK---DVSFFWDWGKVLKEV--VFLW--Q-----ELRYIKS--YASAAGVAVMTISIGHAHSLN 139 (158)
Q Consensus 74 ~~GHGTHvAgiiag~~~~---~~~~~G~vapg~~a~--kv~~--~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~ 139 (158)
..+|||||||||+|...+ +..+.| +||+++.. |++. . ...++++ +|++.|++|||||||......
T Consensus 81 ~~~HGT~vagiiag~~~~~~~~~~~~G-iAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~ 159 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEEDNGEGIKG-VAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFV 159 (346)
T ss_pred CCCcHHHHHHHHhcCCCccccCCceEE-eCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCC
Confidence 889999999999998865 456789 99999443 6664 1 4556666 899999999999999874443
Q ss_pred chHHHHHHHHHHHHHhcc
Q 041977 140 IRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 140 ~~~d~i~~~~~~aw~~~~ 157 (158)
...+.+..+++++.+.+.
T Consensus 160 ~~~~~~~~~~~~a~~~gi 177 (346)
T cd07475 160 DLDDPEQQAIKRAREAGV 177 (346)
T ss_pred CCCCHHHHHHHHHhhCCe
Confidence 556677777788777653
No 5
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.88 E-value=1.2e-22 Score=167.88 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=93.9
Q ss_pred cccccCCCCCcEEEEeccccCCCCcCC--CceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCC
Q 041977 26 LIKTCNVERDITVTLTDSGICPDSEVE--SKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVL 103 (158)
Q Consensus 26 ~W~~~~~G~GV~VaViDTGid~~hp~~--~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~ 103 (158)
+|..+..|+||+|||||||||.+||+. .++.....+.. ......|..||||||||||+|+..+ +..| +||++
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~---~~~~~~~~~gHGT~VAgii~g~~~~--~~~G-vAp~a 75 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAA---AACQDGGASAHGTHVASLIFGQPCS--SVEG-IAPLC 75 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccc---cCCCCCCCCCcHHHHHHHHhcCCCC--Ccee-ECcCC
Confidence 799999999999999999999999982 22222111211 1234567889999999999987543 4679 99998
Q ss_pred eeE--EecCc------hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhcc
Q 041977 104 KEV--VFLWQ------ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 104 ~a~--kv~~~------~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~~ 157 (158)
+.. +++.. ..+++.+ +|+++|++|||||||.........+.+..+++++.+.+.
T Consensus 76 ~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gv 139 (267)
T cd07476 76 RGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNV 139 (267)
T ss_pred eEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCC
Confidence 433 66543 3467777 999999999999999764444556788888888887654
No 6
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.88 E-value=1.5e-22 Score=168.63 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=85.1
Q ss_pred CCcEEEEeccccCCCCcCCCc-e----------------------eeeEeCCCC--------------------CCCCCC
Q 041977 34 RDITVTLTDSGICPDSEVESK-I----------------------IGARYYPSS--------------------EAGNYT 70 (158)
Q Consensus 34 ~GV~VaViDTGid~~hp~~~~-i----------------------~g~~~~~~~--------------------~~~~~~ 70 (158)
++|+|||||||||++||+... + +.+.+|... +.+...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 689999999999999998211 0 222333310 011223
Q ss_pred CCCCCCCCccccccccCCccCCCceeeecccCCeeE--EecCc----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchH
Q 041977 71 TRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLWQ----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRD 142 (158)
Q Consensus 71 ~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~~----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~ 142 (158)
+.|..||||||||||++...++.++.| +||+++.. |++.. .++++.| +|++.|++|||||||.... ...
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~~g~~G-vAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~~--~~~ 157 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNGIGIDG-VADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSFS--PNK 157 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCCCceEE-ECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCCCC--Ccc
Confidence 446889999999999999877778899 99999443 66643 5677788 9999999999999997521 123
Q ss_pred HHHHHHHHHHHHhc
Q 041977 143 ESIYNDLKFCWQLR 156 (158)
Q Consensus 143 d~i~~~~~~aw~~~ 156 (158)
+.+..+++++.+.+
T Consensus 158 ~~~~~ai~~a~~~g 171 (291)
T cd07483 158 EWVDDAIKYAESKG 171 (291)
T ss_pred HHHHHHHHHHHhCC
Confidence 45666677776654
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.87 E-value=3.3e-22 Score=167.03 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=93.6
Q ss_pred cccccccCCCCCcEEEEeccccCCCCcCC-------CceeeeEeCCCCC-------CCCCCCCCCCCCCccccccccCCc
Q 041977 24 DPLIKTCNVERDITVTLTDSGICPDSEVE-------SKIIGARYYPSSE-------AGNYTTRDIENHGTCTSSTTGGNE 89 (158)
Q Consensus 24 ~~~W~~~~~G~GV~VaViDTGid~~hp~~-------~~i~g~~~~~~~~-------~~~~~~~D~~GHGTHvAgiiag~~ 89 (158)
+.+|+.+.+|+||+||||||||+++||+. .++.+..+|.... .+...+.|..||||||||+|+++.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~ 82 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVPDDDPMDCQGHGTHVAGIIAANP 82 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccCCcccccccCCCCCCCCCCCCCcHHHHHHHHhcCC
Confidence 46999999999999999999999999982 1233333443211 223456788999999999999987
Q ss_pred cCCCceeeecccCCeeE--EecCc-----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhc
Q 041977 90 VKDVSFFWDWGKVLKEV--VFLWQ-----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 90 ~~~~~~~G~vapg~~a~--kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~ 156 (158)
.+ ..+.| +||+++.. |++.. ...++++ +|++++++|||||||... .+..+.++..++++.+.+
T Consensus 83 ~~-~~~~G-iAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~--~~~~~~~~~~~~~~~~~g 154 (312)
T cd07489 83 NA-YGFTG-VAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS--GWSEDPWAVVASRIVDAG 154 (312)
T ss_pred CC-CceEE-ECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC--CCCCCHHHHHHHHHHHCC
Confidence 55 56789 99999543 66532 4455666 999999999999999863 223356666666666554
No 8
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.87 E-value=4.3e-22 Score=163.53 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=90.3
Q ss_pred ccccccCCCCCcEEEEeccccCCCCcCC-Cc--eeeeEeCCCCC-------CCCCCCCCCCCCCccccccccCCccCCCc
Q 041977 25 PLIKTCNVERDITVTLTDSGICPDSEVE-SK--IIGARYYPSSE-------AGNYTTRDIENHGTCTSSTTGGNEVKDVS 94 (158)
Q Consensus 25 ~~W~~~~~G~GV~VaViDTGid~~hp~~-~~--i~g~~~~~~~~-------~~~~~~~D~~GHGTHvAgiiag~~~~~~~ 94 (158)
++|+.+.+|+||+|+|||||||++||+. .+ ..+...+.... +......|..||||||||||++...+...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~ 80 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPAVNGYNFVPNVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGG 80 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHcccCCCcc
Confidence 4899999999999999999999999982 22 11111111110 01234467889999999999997644322
Q ss_pred ------eeeecccCCeeE--EecCc-----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHh
Q 041977 95 ------FFWDWGKVLKEV--VFLWQ-----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQL 155 (158)
Q Consensus 95 ------~~G~vapg~~a~--kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~ 155 (158)
..| +||+++.. |++.. ...++.+ +|++.|++|||||||...+ ..+.+.+..+++++++.
T Consensus 81 ~g~i~~~~g-vap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~-~~~~~~~~~a~~~~~~~ 154 (273)
T cd07485 81 VGGIAGAGG-VAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGG-GIYSPLLKDAFDYFIEN 154 (273)
T ss_pred eeccccccc-cCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCc-cccCHHHHHHHHHHHHh
Confidence 346 88988443 66653 5566777 9999999999999998732 33456677777777765
No 9
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.86 E-value=1.3e-21 Score=158.91 Aligned_cols=127 Identities=15% Similarity=0.209 Sum_probs=97.1
Q ss_pred CCcccccccCCCCCcEEEEeccccCCCCcC--CCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeec
Q 041977 22 SMDPLIKTCNVERDITVTLTDSGICPDSEV--ESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDW 99 (158)
Q Consensus 22 ~~~~~W~~~~~G~GV~VaViDTGid~~hp~--~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~v 99 (158)
..+.+|+.. +|+||+|+||||||+++||+ +.++....++.+.+ ..+.|..||||||||||++...++..+.| +
T Consensus 17 ~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~~~~~~~~~~~---~~~~d~~~HGT~vagii~~~~~~~~~~~G-i 91 (260)
T cd07484 17 GAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKFVLGYDFVDND---SDAMDDNGHGTHVAGIIAAATNNGTGVAG-V 91 (260)
T ss_pred ChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCcccceeccCCC---CCCCCCCCcHHHHHHHHhCccCCCCceEe-E
Confidence 355799988 89999999999999999998 34444445555432 33668899999999999998766667889 9
Q ss_pred ccCCeeE--EecCc-----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhcc
Q 041977 100 GKVLKEV--VFLWQ-----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 100 apg~~a~--kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~~ 157 (158)
||+++.. +++.. ..+++.+ ++++.|++|||||||... +...+...++++++.+.
T Consensus 92 ap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~----~~~~~~~~~~~a~~~gi 154 (260)
T cd07484 92 APKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL----GSTALQEAINYAWNKGV 154 (260)
T ss_pred CCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCC
Confidence 9998443 66654 4566667 899999999999999873 34556666677776543
No 10
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.86 E-value=2.1e-21 Score=157.00 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=92.3
Q ss_pred CCCcEEEEeccccCCCCcCC-CceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccC-CCceeeecccCCeeE--Ee
Q 041977 33 ERDITVTLTDSGICPDSEVE-SKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVK-DVSFFWDWGKVLKEV--VF 108 (158)
Q Consensus 33 G~GV~VaViDTGid~~hp~~-~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~-~~~~~G~vapg~~a~--kv 108 (158)
|+||+|+||||||+.+||+. .++.....+...........|..||||||||+|+|+..+ +..+.| +||+++.. |+
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiiag~~~~~~~~~~G-iap~a~i~~~~v 79 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRFADFVNTVNGRTTPYDDNGHGTHVAGIIAGSGRASNGKYKG-VAPGANLVGVKV 79 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccccccccccccCCCCCCCCCCchHHHHHHHhcCCcccCCceEE-ECCCCeEEEEEe
Confidence 79999999999999999982 233222223221112345678889999999999998765 455789 99999443 66
Q ss_pred cCc-----hhHHHHH--HHHHC----CCcEEEEccCCCCCCCchHHHHHHHHHHHHHhcc
Q 041977 109 LWQ-----ELRYIKS--YASAA----GVAVMTISIGHAHSLNIRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 109 ~~~-----~s~iiaa--~Av~~----g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~~ 157 (158)
+.. .++++.+ ++++. +++|||||||.......+.+.+..+++++++.+.
T Consensus 80 ~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gi 139 (264)
T cd07487 80 LDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGI 139 (264)
T ss_pred ecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 643 4667777 88888 9999999999875445667888889998888654
No 11
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.85 E-value=2.9e-21 Score=161.93 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=89.5
Q ss_pred CcccccccCCCCCcEEEEeccccCCCCcCCCc-eeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeeccc
Q 041977 23 MDPLIKTCNVERDITVTLTDSGICPDSEVESK-IIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGK 101 (158)
Q Consensus 23 ~~~~W~~~~~G~GV~VaViDTGid~~hp~~~~-i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vap 101 (158)
.+++|+.+.+|+||+||||||||+.+||.... +-+...+..+ ......|++|||||||+++ .| +||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~~~~~~~~~~~~~~~~--~~~~~~D~~gHGT~vag~i----------~G-vAP 76 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPFFESRGYQVRVVLAPG--ATDPACDENGHGTGESANL----------FA-IAP 76 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCchhhcCCccceeecCCC--CCCCCCCCCCcchheeece----------eE-eCC
Confidence 45799999999999999999999999985222 1111112211 1234578899999999864 47 999
Q ss_pred CCeeE--EecCc-hhHHHHH--HHHHCCCcEEEEccCCCCCC---------CchHHHHHHHHHHHHHhcc
Q 041977 102 VLKEV--VFLWQ-ELRYIKS--YASAAGVAVMTISIGHAHSL---------NIRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 102 g~~a~--kv~~~-~s~iiaa--~Av~~g~dVInmSlG~~~~~---------~~~~d~i~~~~~~aw~~~~ 157 (158)
+++.. |++.. .++++.+ ||++++++|||||||..... +...+++++++++|++.+.
T Consensus 77 ~a~i~~vkv~~~~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi 146 (298)
T cd07494 77 GAQFIGVKLGGPDLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGI 146 (298)
T ss_pred CCeEEEEEccCCCcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCc
Confidence 88543 77764 5667777 99999999999999986321 1235678899999888654
No 12
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.85 E-value=4e-21 Score=159.84 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=76.8
Q ss_pred cCCCCCcEEEEeccccCCCCcC-CCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE--
Q 041977 30 CNVERDITVTLTDSGICPDSEV-ESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV-- 106 (158)
Q Consensus 30 ~~~G~GV~VaViDTGid~~hp~-~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~-- 106 (158)
.++|+||+||||||||+.+||+ ..+.+...+|.+. ..+.|.+||||||||||+|+..++. ..| +||+++..
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~~~~~~~~~~----~~~~d~~gHGT~VAgiiag~~~~~~-~~G-vAp~a~i~~~ 77 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRDITTKSFVGG----EDVQDGHGHGTHCAGTIFGRDVPGP-RYG-VARGAEIALI 77 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCcccCcccCCC----CCCCCCCCcHHHHHHHHhcccCCCc-ccc-cCCCCEEEEE
Confidence 4689999999999999999999 3333333445433 2357889999999999999876533 468 99998533
Q ss_pred EecCc-----hhHHHHH--HHHHCCCcEEEEccCCC
Q 041977 107 VFLWQ-----ELRYIKS--YASAAGVAVMTISIGHA 135 (158)
Q Consensus 107 kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~ 135 (158)
|++.. .+.++.+ +|++.|++|||||||..
T Consensus 78 ~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 113 (297)
T cd07480 78 GKVLGDGGGGDGGILAGIQWAVANGADVISMSLGAD 113 (297)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 66643 4567777 99999999999999986
No 13
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.85 E-value=2.7e-21 Score=160.60 Aligned_cols=111 Identities=12% Similarity=0.007 Sum_probs=81.2
Q ss_pred CCCCCcEEEEeccccCCCCcC-----CCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCee
Q 041977 31 NVERDITVTLTDSGICPDSEV-----ESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKE 105 (158)
Q Consensus 31 ~~G~GV~VaViDTGid~~hp~-----~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a 105 (158)
.+|+||+|+|||||||..||+ ..++.+...+... .....|..||||||||||+ | +||+++.
T Consensus 2 ~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~~~~---~~~~~d~~gHGT~vAgii~----------G-vAP~a~l 67 (275)
T cd05562 2 VDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNVLGD---LDGGSGGGDEGRAMLEIIH----------D-IAPGAEL 67 (275)
T ss_pred CCCCceEEEEEeCCccccccccccccCCCCCcceeeccc---cCCCCCCCchHHHHHHHHh----------c-cCCCCEE
Confidence 579999999999999998872 3333332222221 2345688999999999995 6 8998844
Q ss_pred E--EecCchhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHh
Q 041977 106 V--VFLWQELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQL 155 (158)
Q Consensus 106 ~--kv~~~~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~ 155 (158)
. ++....++++++ ||+++|++|||||||......+....++.+++++++.
T Consensus 68 ~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~ 121 (275)
T cd05562 68 AFHTAGGGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVVAS 121 (275)
T ss_pred EEEecCCCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHHHc
Confidence 3 555547788888 9999999999999998633222334678888888775
No 14
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=4.1e-21 Score=157.16 Aligned_cols=113 Identities=18% Similarity=0.119 Sum_probs=80.6
Q ss_pred CCCcEEEEeccccCCCCcC-CCceeeeEeCCCCCCC----CCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE-
Q 041977 33 ERDITVTLTDSGICPDSEV-ESKIIGARYYPSSEAG----NYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV- 106 (158)
Q Consensus 33 G~GV~VaViDTGid~~hp~-~~~i~g~~~~~~~~~~----~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~- 106 (158)
+++|+|||||||||++||+ .++++..+.|.....+ .....|..||||||||||+ | +||+++..
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiI~----------g-vap~a~i~~ 70 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARMIC----------R-ICPSAKLYV 70 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHHHH----------H-HCCCCeEEE
Confidence 7899999999999999999 3345555555543211 1123578999999999996 4 77777433
Q ss_pred -EecCc-----------hhHHHHH--HHHHCCCcEEEEccCCCCCC--CchHHHHHHHHHHHHHhc
Q 041977 107 -VFLWQ-----------ELRYIKS--YASAAGVAVMTISIGHAHSL--NIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 107 -kv~~~-----------~s~iiaa--~Av~~g~dVInmSlG~~~~~--~~~~d~i~~~~~~aw~~~ 156 (158)
|++.. ...++.| ||+++|+||||||||...+. +...+.+..++++|.+.+
T Consensus 71 ~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~G 136 (247)
T cd07491 71 IKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRG 136 (247)
T ss_pred EEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCC
Confidence 67642 2457777 99999999999999986321 123567777777777654
No 15
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=2.6e-20 Score=151.95 Aligned_cols=117 Identities=19% Similarity=0.167 Sum_probs=85.3
Q ss_pred CcEEEEeccccCCCCcCC--------CceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE
Q 041977 35 DITVTLTDSGICPDSEVE--------SKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV 106 (158)
Q Consensus 35 GV~VaViDTGid~~hp~~--------~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~ 106 (158)
||+||||||||+++||+. .++.+.++|.+...+ ...|.+||||||||||++.... .+.| +||+++..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~HGT~vagiia~~~~~--~~~G-vAp~a~l~ 75 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFKNLRILGEYDFVDNSNN--TNYTDDDHGTAVLSTMAGYTPG--VMVG-TAPNASYY 75 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccccCCceeeeecCccCCCC--CCCCCCCchhhhheeeeeCCCC--CEEE-eCCCCEEE
Confidence 799999999999999984 567777777765321 1367889999999999997642 3679 99998432
Q ss_pred --EecCc-------hhHHHHH--HHHHCCCcEEEEccCCCCCCCc-----------hHHHHHHHHHHHHHhc
Q 041977 107 --VFLWQ-------ELRYIKS--YASAAGVAVMTISIGHAHSLNI-----------RDESIYNDLKFCWQLR 156 (158)
Q Consensus 107 --kv~~~-------~s~iiaa--~Av~~g~dVInmSlG~~~~~~~-----------~~d~i~~~~~~aw~~~ 156 (158)
|++.. ...++.+ +|.+.|++|||||||....... ....+.++++++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~g 147 (261)
T cd07493 76 LARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKG 147 (261)
T ss_pred EEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCC
Confidence 44322 2345555 8999999999999998632111 2246778888888765
No 16
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=4.4e-21 Score=162.03 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=68.2
Q ss_pred CCCcEEEEeccccCCCCcCCC-ce-eee---Ee----CCCCC----CCCCCCCCCCCCCccccccccCCccC--------
Q 041977 33 ERDITVTLTDSGICPDSEVES-KI-IGA---RY----YPSSE----AGNYTTRDIENHGTCTSSTTGGNEVK-------- 91 (158)
Q Consensus 33 G~GV~VaViDTGid~~hp~~~-~i-~g~---~~----~~~~~----~~~~~~~D~~GHGTHvAgiiag~~~~-------- 91 (158)
|+||+|||||||||.+||+.. +. .+. .+ +..+. .....+.|++||||||||||||+..+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~~~~~~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~~~~~~~~~~ 80 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNFSWKLKFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGKMEYNLYGYT 80 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCCCcccccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCcccccccccc
Confidence 799999999999999999931 11 000 00 11110 01134679999999999999998642
Q ss_pred -CCceeeecccCCeeE--EecCc-----hhHHHH-------H----HHHHCCCcEEEEccCCC
Q 041977 92 -DVSFFWDWGKVLKEV--VFLWQ-----ELRYIK-------S----YASAAGVAVMTISIGHA 135 (158)
Q Consensus 92 -~~~~~G~vapg~~a~--kv~~~-----~s~iia-------a----~Av~~g~dVInmSlG~~ 135 (158)
..++.| +||+++.. |+|.. ...+++ + ++.+++++|||||||..
T Consensus 81 ~~~g~~G-VAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~ 142 (311)
T cd07497 81 GKFLIRG-IAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGIS 142 (311)
T ss_pred cccceee-eCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcC
Confidence 235789 99999543 88742 112222 1 34478999999999986
No 17
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=2.7e-20 Score=153.32 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=88.6
Q ss_pred CCCcEEEEeccccCCCCcCC-------CceeeeEeCCCCCCCCC------------CCCCCCCCCccccccccCCccCCC
Q 041977 33 ERDITVTLTDSGICPDSEVE-------SKIIGARYYPSSEAGNY------------TTRDIENHGTCTSSTTGGNEVKDV 93 (158)
Q Consensus 33 G~GV~VaViDTGid~~hp~~-------~~i~g~~~~~~~~~~~~------------~~~D~~GHGTHvAgiiag~~~~~~ 93 (158)
|+||+||||||||+++||+. .+++...+|........ ...|..+|||||||+|+|...+..
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~n~~ 80 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVNVG 80 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCCccC
Confidence 79999999999999999994 55666666654321111 134588999999999999987777
Q ss_pred ceeeecccCCeeE--EecCc-----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhc
Q 041977 94 SFFWDWGKVLKEV--VFLWQ-----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 94 ~~~G~vapg~~a~--kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~ 156 (158)
.+.| +||+++.. |++.. ..+++.+ +|++++++|||||||.... ...+.+..+++++-+.+
T Consensus 81 ~~~G-iap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~--~~~~~~~~~~~~~~~~g 149 (295)
T cd07474 81 TIKG-VAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVN--GPDDPDAIAINNAVKAG 149 (295)
T ss_pred ceEe-ECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCHHHHHHHHHHhcC
Confidence 7889 99999443 66642 5677777 9999999999999997632 12345555555554443
No 18
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=1.3e-20 Score=155.66 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=82.7
Q ss_pred CcEEEEeccccCCCCcC-CCceeeeEeCCCCC-------------CC----------------CCCCCCCCCCCcccccc
Q 041977 35 DITVTLTDSGICPDSEV-ESKIIGARYYPSSE-------------AG----------------NYTTRDIENHGTCTSST 84 (158)
Q Consensus 35 GV~VaViDTGid~~hp~-~~~i~g~~~~~~~~-------------~~----------------~~~~~D~~GHGTHvAgi 84 (158)
||+||||||||+++||+ ..+++..++|.... .+ .....|..|||||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgi 80 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVAGT 80 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHHHHHH
Confidence 79999999999999998 33333334443210 00 12234577899999999
Q ss_pred ccCCccCCCceeeecccCCeeE--EecCc----hhHHHHH--HHH----------HCCCcEEEEccCCCCCCCchHHHHH
Q 041977 85 TGGNEVKDVSFFWDWGKVLKEV--VFLWQ----ELRYIKS--YAS----------AAGVAVMTISIGHAHSLNIRDESIY 146 (158)
Q Consensus 85 iag~~~~~~~~~G~vapg~~a~--kv~~~----~s~iiaa--~Av----------~~g~dVInmSlG~~~~~~~~~d~i~ 146 (158)
|+|...++.++.| +||+++.. |++.. .++++.+ ||+ .++++|||||||..... ...+.
T Consensus 81 iaa~~~~~~~~~G-vAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~~---~~~~~ 156 (285)
T cd07496 81 IAAVTNNGVGVAG-VAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGAC---SATMQ 156 (285)
T ss_pred HhCcCCCCCCcee-ecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCCC---CHHHH
Confidence 9999877778889 99999543 77654 5678877 776 56789999999987331 34455
Q ss_pred HHHHHHHHhc
Q 041977 147 NDLKFCWQLR 156 (158)
Q Consensus 147 ~~~~~aw~~~ 156 (158)
.+++++.+.+
T Consensus 157 ~ai~~a~~~G 166 (285)
T cd07496 157 NAINDVRARG 166 (285)
T ss_pred HHHHHHHHCC
Confidence 5566655543
No 19
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=3e-20 Score=149.32 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=87.7
Q ss_pred cEEEEeccccCCCCcCCCc---eeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE--EecC
Q 041977 36 ITVTLTDSGICPDSEVESK---IIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLW 110 (158)
Q Consensus 36 V~VaViDTGid~~hp~~~~---i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~ 110 (158)
|+||||||||+++||+... ++....+... ...+.|..||||||||||+++..++.++.| +||+++.. |++.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~~~~~~~~~~~---~~~~~~~~~HGT~vAgiiag~~~~~~~~~G-vap~a~i~~~~~~~ 76 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPKLVPGWNFVSN---NDPTSDIDGHGTACAGVAAAVGNNGLGVAG-VAPGAKLMPVRIAD 76 (242)
T ss_pred CEEEEecCCCCCCChhhccCcCccCCccccCC---CCCCCCCCCCHHHHHHHHHhccCCCceeEe-ECCCCEEEEEEEEC
Confidence 7899999999999998222 3332333322 124578899999999999998766677889 99999543 5664
Q ss_pred c-----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHH
Q 041977 111 Q-----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQ 154 (158)
Q Consensus 111 ~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~ 154 (158)
. .+++..+ +|++.+++|||||||.......+.+.+..+++++++
T Consensus 77 ~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~ 127 (242)
T cd07498 77 SLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRN 127 (242)
T ss_pred CCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 3 4566666 899999999999999875555677888888888877
No 20
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.82 E-value=5.5e-20 Score=150.39 Aligned_cols=103 Identities=18% Similarity=0.125 Sum_probs=71.3
Q ss_pred CCCcEEEEeccccCCCCcCCC-ceee--------eEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCC
Q 041977 33 ERDITVTLTDSGICPDSEVES-KIIG--------ARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVL 103 (158)
Q Consensus 33 G~GV~VaViDTGid~~hp~~~-~i~g--------~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~ 103 (158)
|+||+||||||||+++||+.. ++.+ ...+.+.......+.|..||||||||||+|....+. ..| +||++
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~~~~~~-~~G-vAp~a 78 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGDGQ-QIG-VAPGA 78 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccccCCCCcccccccccCCCCCCCCCCCCCchhhhhhheeecCCCCC-ceE-ECCCC
Confidence 799999999999999999821 1110 001111111234567889999999999998765443 389 99999
Q ss_pred eeE--EecCc----hhHHHHH--HHH------------HCCCcEEEEccCCCCC
Q 041977 104 KEV--VFLWQ----ELRYIKS--YAS------------AAGVAVMTISIGHAHS 137 (158)
Q Consensus 104 ~a~--kv~~~----~s~iiaa--~Av------------~~g~dVInmSlG~~~~ 137 (158)
+.. |++.. .++++.+ +++ +.+++|||||||....
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~ 132 (264)
T cd07481 79 RWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG 132 (264)
T ss_pred eEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC
Confidence 533 66653 4566666 554 3789999999998743
No 21
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.82 E-value=2e-20 Score=154.40 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=78.8
Q ss_pred CCcccccccCCCCCcEEEEeccccCCCCcCC-Ccee--eeEeCCCCCCCCCCC-CCCCCCCccccccccCCccCCCceee
Q 041977 22 SMDPLIKTCNVERDITVTLTDSGICPDSEVE-SKII--GARYYPSSEAGNYTT-RDIENHGTCTSSTTGGNEVKDVSFFW 97 (158)
Q Consensus 22 ~~~~~W~~~~~G~GV~VaViDTGid~~hp~~-~~i~--g~~~~~~~~~~~~~~-~D~~GHGTHvAgiiag~~~~~~~~~G 97 (158)
+.+.+|+.+.+|+||+|+||||||+.+||+. .++. ..++|.....+.... .|..||||||||||+|+..+..+..|
T Consensus 27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~vAgiiag~~~~~~~~~G 106 (297)
T cd04059 27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRYDDDNSHGTRCAGEIAAVGNNGICGVG 106 (297)
T ss_pred ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccccccccCCCCCCCCccccccccCcceeeEEEeecCCCccccc
Confidence 3578999989999999999999999999992 2222 333444332222222 27889999999999998755545689
Q ss_pred ecccCCeeE--EecCc---hhHHHHH-HHHHCCCcEEEEccCCC
Q 041977 98 DWGKVLKEV--VFLWQ---ELRYIKS-YASAAGVAVMTISIGHA 135 (158)
Q Consensus 98 ~vapg~~a~--kv~~~---~s~iiaa-~Av~~g~dVInmSlG~~ 135 (158)
+||+++.. |++.. ...+..+ ....+.++|||||||..
T Consensus 107 -vAp~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~ 149 (297)
T cd04059 107 -VAPGAKLGGIRMLDGDVTDVVEAESLGLNPDYIDIYSNSWGPD 149 (297)
T ss_pred -ccccceEeEEEecCCccccHHHHHHHhcccCCceEEECCCCCC
Confidence 99998543 66654 2222233 33344569999999976
No 22
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.82 E-value=7.8e-20 Score=148.28 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=83.7
Q ss_pred cccccCCCCCcEEEEeccccCCCCcC-CCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCe
Q 041977 26 LIKTCNVERDITVTLTDSGICPDSEV-ESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLK 104 (158)
Q Consensus 26 ~W~~~~~G~GV~VaViDTGid~~hp~-~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~ 104 (158)
.|....+|+||+|+||||||+.+||+ ..++...+.|... ....|..||||||||||+++. .| +||+++
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~~~~~~~~----~~~~d~~~HGT~vAgiia~~~------~G-vAp~a~ 85 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIWGADFVGG----DPDSDCNGHGTHVAGTVGGKT------YG-VAKKAN 85 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCeeeeeecCCC----CCCCCCCccHHHHHHHHHccc------cC-cCCCCe
Confidence 66667899999999999999999998 3444444455433 226788999999999999863 58 999884
Q ss_pred eE--EecCc-----hhHHHHH--HHHHC-----CCcEEEEccCCCCCCCchHHHHHHHHHHHHHh
Q 041977 105 EV--VFLWQ-----ELRYIKS--YASAA-----GVAVMTISIGHAHSLNIRDESIYNDLKFCWQL 155 (158)
Q Consensus 105 a~--kv~~~-----~s~iiaa--~Av~~-----g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~ 155 (158)
.. |++.. .+.++.+ ++++. +++|||||||... .+.+..+++++.+.
T Consensus 86 i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~ 145 (255)
T cd04077 86 LVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-----STALDAAVAAAVNA 145 (255)
T ss_pred EEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHC
Confidence 33 66653 4667777 78876 4899999999873 34445555555554
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=8.8e-20 Score=147.33 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=81.6
Q ss_pred CcEEEEeccccCCCCcC-CCceeeeEeCCCC-CCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE--EecC
Q 041977 35 DITVTLTDSGICPDSEV-ESKIIGARYYPSS-EAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLW 110 (158)
Q Consensus 35 GV~VaViDTGid~~hp~-~~~i~g~~~~~~~-~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~ 110 (158)
||+||||||||+++||+ ..++.....|... ........|..||||||||||+++..+ ....| +||+++.. |++.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~~-~~~~G-vAp~a~i~~~~v~~ 78 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQWADFDENRRISATEVFDAGGHGTHVSGTIGGGGAK-GVYIG-VAPEADLLHGKVLD 78 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCCCC-CCEEE-ECCCCEEEEEEEec
Confidence 79999999999999998 4444444555422 112345567889999999999998763 34678 99999443 6664
Q ss_pred c----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHH
Q 041977 111 Q----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCW 153 (158)
Q Consensus 111 ~----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw 153 (158)
. .++++.+ +|++.+++|||||||..... .+.+...++.+-
T Consensus 79 ~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~ 124 (254)
T cd07490 79 DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALS 124 (254)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHH
Confidence 3 5677777 89999999999999987321 344444444443
No 24
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=4.3e-20 Score=149.96 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=79.0
Q ss_pred cEEEEeccccCCCCcCC-CceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE--EecCc-
Q 041977 36 ITVTLTDSGICPDSEVE-SKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLWQ- 111 (158)
Q Consensus 36 V~VaViDTGid~~hp~~-~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~~- 111 (158)
|+||||||||+.+||+. .+++...++.. ..+.|..+|||||||||+++..+. .| +||+++.. |++..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~~~~~~~-----~~~~~~~~HGT~vAgiia~~~~~~---~G-vap~a~i~~~~v~~~~ 71 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIARLFFAG-----PGAPAPSAHGTAVASLLAGAGAQR---PG-LLPGADLYGADVFGRA 71 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccccccCCC-----CCCCCCCCCHHHHHHHHhCCCCCC---cc-cCCCCEEEEEEEecCC
Confidence 78999999999999993 33333222221 245678899999999999986543 68 99999443 66542
Q ss_pred -------hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhcc
Q 041977 112 -------ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 112 -------~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~~ 157 (158)
..+++.+ ||++.|++|||||||+. . .+.+..+++++.+.+.
T Consensus 72 ~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-~----~~~l~~ai~~a~~~gi 121 (239)
T cd05561 72 GGGEGASALALARALDWLAEQGVRVVNISLAGP-P----NALLAAAVAAAAARGM 121 (239)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-C----CHHHHHHHHHHHHCCC
Confidence 3567777 99999999999999975 2 2456677777776653
No 25
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.81 E-value=6.2e-20 Score=162.00 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=79.6
Q ss_pred CCCCcEEEEeccccCCCCcCC------CceeeeE-----------------eCCC--------C--CCCCCCCCCCCCCC
Q 041977 32 VERDITVTLTDSGICPDSEVE------SKIIGAR-----------------YYPS--------S--EAGNYTTRDIENHG 78 (158)
Q Consensus 32 ~G~GV~VaViDTGid~~hp~~------~~i~g~~-----------------~~~~--------~--~~~~~~~~D~~GHG 78 (158)
+|+||+|||||||||+.||+. .++.... .+.+ . ..+.....|.+|||
T Consensus 2 tG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GHG 81 (455)
T cd07478 2 TGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGHG 81 (455)
T ss_pred CCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCch
Confidence 699999999999999999981 1221110 0110 0 01123457899999
Q ss_pred ccccccccCCccCCCceeeecccCCeeE--EecCc---------------hhHHHHH--HHHHC-----CCcEEEEccCC
Q 041977 79 TCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLWQ---------------ELRYIKS--YASAA-----GVAVMTISIGH 134 (158)
Q Consensus 79 THvAgiiag~~~~~~~~~G~vapg~~a~--kv~~~---------------~s~iiaa--~Av~~-----g~dVInmSlG~ 134 (158)
|||||||||+..++.++.| +||+++.. |++.. .++++.| ++++. .+.|||||||.
T Consensus 82 ThvAGIiag~~~~~~~~~G-vAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VInlSlG~ 160 (455)
T cd07478 82 THVAGIAAGNGDNNPDFKG-VAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGT 160 (455)
T ss_pred HHHHHHHhcCCCCCCCccc-cCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 9999999999877778899 99999332 55432 5688888 55543 35799999998
Q ss_pred CCCCCchHHHHHHHHHH
Q 041977 135 AHSLNIRDESIYNDLKF 151 (158)
Q Consensus 135 ~~~~~~~~d~i~~~~~~ 151 (158)
......-.++++++++.
T Consensus 161 ~~g~~~g~~~l~~~i~~ 177 (455)
T cd07478 161 NFGSHDGTSLLERYIDA 177 (455)
T ss_pred CCCCCCCccHHHHHHHH
Confidence 64333333444444443
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.81 E-value=2.5e-19 Score=147.20 Aligned_cols=101 Identities=17% Similarity=0.072 Sum_probs=73.4
Q ss_pred ccCCCCCcEEEEeccccCCCCcCC------------CceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCC---
Q 041977 29 TCNVERDITVTLTDSGICPDSEVE------------SKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDV--- 93 (158)
Q Consensus 29 ~~~~G~GV~VaViDTGid~~hp~~------------~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~--- 93 (158)
.+.+|+||+||||||||+.+||+. +++.....+. ....|..||||||||||++...+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~------~~~~d~~~HGT~vAgiia~~~~~~~~~~ 75 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNKTNLFHRKIVRYDSLS------DTKDDVDGHGTHVAGIIAGKGNDSSSIS 75 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCcCccCcccEEEeeccC------CCCCCCCCCcchhheeeccCCcCCCccc
Confidence 456899999999999999999982 1121111111 2223789999999999999876654
Q ss_pred ceeeecccCCeeE--EecCc------hhHHHHH--HHHHCCCcEEEEccCCCC
Q 041977 94 SFFWDWGKVLKEV--VFLWQ------ELRYIKS--YASAAGVAVMTISIGHAH 136 (158)
Q Consensus 94 ~~~G~vapg~~a~--kv~~~------~s~iiaa--~Av~~g~dVInmSlG~~~ 136 (158)
.+.| +||+++.. +++.. ..++..+ ++.+.+++|||||||...
T Consensus 76 ~~~G-vAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~ 127 (293)
T cd04842 76 LYKG-VAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPV 127 (293)
T ss_pred cccc-ccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCC
Confidence 6789 99998444 66543 2234444 788899999999999874
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.80 E-value=1.1e-19 Score=151.09 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=87.5
Q ss_pred CcccccccC-CCCCcEEEEeccccCCCCcCC-CceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecc
Q 041977 23 MDPLIKTCN-VERDITVTLTDSGICPDSEVE-SKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWG 100 (158)
Q Consensus 23 ~~~~W~~~~-~G~GV~VaViDTGid~~hp~~-~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~va 100 (158)
.+++|+... .|+||+|+|||||||.+||+. .+++. ...+ ..+.|++||||||||||++.. ++.+..| +|
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~---~~~~----~~~~d~~gHGT~VAGiIaa~~-n~~G~~G-vA 74 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT---LISG----LTDQADSDHGTAVLGIIVAKD-NGIGVTG-IA 74 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc---ccCC----CCCCCCCCCcchhheeeeeec-CCCceee-ec
Confidence 567998864 489999999999999999992 22211 1111 125688999999999999863 5556789 99
Q ss_pred cCCeeE--EecCchhHHHHH--HHHH----CCCcEEEEccCCCCCC-----CchHHHHHHHHHHHHHhc
Q 041977 101 KVLKEV--VFLWQELRYIKS--YASA----AGVAVMTISIGHAHSL-----NIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 101 pg~~a~--kv~~~~s~iiaa--~Av~----~g~dVInmSlG~~~~~-----~~~~d~i~~~~~~aw~~~ 156 (158)
|+++.. |++. .++++.+ +|++ .++.+||||||..... ..+.+++..++++|.+.+
T Consensus 75 p~a~l~~i~v~~-~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G 142 (277)
T cd04843 75 HGAQAAVVSSTR-VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLG 142 (277)
T ss_pred cCCEEEEEEecC-CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCC
Confidence 999544 7764 3455555 6666 3467899999986221 134566777888887654
No 28
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.80 E-value=2.8e-19 Score=142.02 Aligned_cols=114 Identities=15% Similarity=0.206 Sum_probs=82.6
Q ss_pred CcEEEEeccccCCCCcC-CCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE--EecCc
Q 041977 35 DITVTLTDSGICPDSEV-ESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLWQ 111 (158)
Q Consensus 35 GV~VaViDTGid~~hp~-~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~~ 111 (158)
||+|+||||||+.+||+ ..++....+|..... ....|..+|||||||+|++..... .+.| +||+++.. |++..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~~~~~~~~~~~--~~~~~~~~HGT~vA~ii~~~~~~~-~~~g-iap~a~i~~~~~~~~ 76 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIVGGANFTGDDN--NDYQDGNGHGTHVAGIIAALDNGV-GVVG-VAPEADLYAVKVLND 76 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccccCcccccCCCC--CCCCCCCCCHHHHHHHHhcccCCC-ccEe-eCCCCEEEEEEEECC
Confidence 79999999999999998 334444455544321 356678899999999999976443 5778 99999443 66654
Q ss_pred -----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhc
Q 041977 112 -----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 112 -----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~ 156 (158)
.++++.+ +|++.|++|||||||...... .+..+++++.+.+
T Consensus 77 ~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~~~----~~~~~~~~a~~~g 124 (229)
T cd07477 77 DGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSP----ALREAIKKAYAAG 124 (229)
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECCccCCCCH----HHHHHHHHHHHCC
Confidence 4567777 999999999999999874333 3445555555543
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=2.8e-19 Score=144.82 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=79.9
Q ss_pred CCcEEEEeccccCCCCcCC-Cceee-------------eEeCCCC------CCCCCCCCCCCCCCccccccccCCccCCC
Q 041977 34 RDITVTLTDSGICPDSEVE-SKIIG-------------ARYYPSS------EAGNYTTRDIENHGTCTSSTTGGNEVKDV 93 (158)
Q Consensus 34 ~GV~VaViDTGid~~hp~~-~~i~g-------------~~~~~~~------~~~~~~~~D~~GHGTHvAgiiag~~~~~~ 93 (158)
+||+|+|||||||++||+. .++.- ...|.+. ..+..++.|..||||||||||++...++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~~~~~~~~ 81 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNNGI 81 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHHCcCCCCC
Confidence 6999999999999999982 22110 0011111 01124457889999999999999987777
Q ss_pred ceeeecccCCeeE--EecCc-----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHH
Q 041977 94 SFFWDWGKVLKEV--VFLWQ-----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYND 148 (158)
Q Consensus 94 ~~~G~vapg~~a~--kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~ 148 (158)
.+.| +||+++.. |++.. ..+++.+ +|++.+++|||||||.....+.+.+.+.++
T Consensus 82 ~~~G-vAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~ 144 (259)
T cd07473 82 GIAG-VAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIARA 144 (259)
T ss_pred ceEE-eCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 7889 99999443 56543 4567777 899999999999999874433334444333
No 30
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=2.7e-19 Score=142.47 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=74.9
Q ss_pred CcEEEEeccccCCCCcC-CCceeeeEeCCCC--CCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeEEecCc
Q 041977 35 DITVTLTDSGICPDSEV-ESKIIGARYYPSS--EAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEVVFLWQ 111 (158)
Q Consensus 35 GV~VaViDTGid~~hp~-~~~i~g~~~~~~~--~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~kv~~~ 111 (158)
||+||||||||+++||+ ...+...+.+... ..+.....|..||||||||||++.. +++.+.. .|++..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~-p~~~i~~--------~~v~~~ 71 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDGEVTIDLEIIVVSAEGGDKDGHGTACAGIIKKYA-PEAEIGS--------IKILGE 71 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccccccccccccccCCCCCCCCCCcHHHHHHHHHccC-CCCeEEE--------EEEeCC
Confidence 79999999999999998 2233333333211 1123455688999999999999864 3332221 144433
Q ss_pred -----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhc
Q 041977 112 -----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 112 -----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~ 156 (158)
..+++.+ +|+++|++|||||||.... ...+.+..+++++++.+
T Consensus 72 ~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~--~~~~~~~~~~~~a~~~g 121 (222)
T cd07492 72 DGRCNSFVLEKALRACVENDIRIVNLSLGGPGD--RDFPLLKELLEYAYKAG 121 (222)
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--CcCHHHHHHHHHHHHCC
Confidence 4567777 9999999999999998632 23456777777777744
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.78 E-value=9.1e-19 Score=143.74 Aligned_cols=118 Identities=19% Similarity=0.168 Sum_probs=80.6
Q ss_pred CcEEEEeccccCCCCcCCC-cee-eeEeCCC-CC---------CCCCCCCCCCCCCccccccccCCccCCCceeeecccC
Q 041977 35 DITVTLTDSGICPDSEVES-KII-GARYYPS-SE---------AGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKV 102 (158)
Q Consensus 35 GV~VaViDTGid~~hp~~~-~i~-g~~~~~~-~~---------~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg 102 (158)
.|+||||||||+++||+.. ++. ..+.+.. +. .+.....|..||||||||+|+++... .| +||+
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~----~G-vAp~ 75 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIAANGNI----KG-VAPG 75 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHhcCCCC----ce-eCCC
Confidence 4899999999999999832 221 1222211 10 01233457799999999999986432 38 9999
Q ss_pred CeeE--EecCc-----hhHHHHH--HHHHCCCcEEEEccCCCCCC-------CchHHHHHHHHHHHHHhcc
Q 041977 103 LKEV--VFLWQ-----ELRYIKS--YASAAGVAVMTISIGHAHSL-------NIRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 103 ~~a~--kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~-------~~~~d~i~~~~~~aw~~~~ 157 (158)
++.. |+++. .++++.+ +|++.+++|||||||..... ....+.+..+++++++.+.
T Consensus 76 a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~ 146 (294)
T cd07482 76 IGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGS 146 (294)
T ss_pred CEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCC
Confidence 9543 66653 4577777 99999999999999975221 2234667777888877653
No 32
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.76 E-value=2.8e-18 Score=137.77 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=73.3
Q ss_pred CCCCcEEEEeccccCCCCcCCC-ceeeeEeCCCC-CCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE--E
Q 041977 32 VERDITVTLTDSGICPDSEVES-KIIGARYYPSS-EAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--V 107 (158)
Q Consensus 32 ~G~GV~VaViDTGid~~hp~~~-~i~g~~~~~~~-~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--k 107 (158)
+|+||+|+||||||+.+||+.. ++.....+... ........|.++|||||||+|+|+..+ ....| +||+++.. |
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vagiiag~~~~-~~~~G-iAp~a~i~~~~ 78 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVAVNDAGYASNGDGDSHGTHVAGVIAAARDG-GGMHG-VAPDATLYSAR 78 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccccccccCCCCCCCCChHHHHHHHHhcCcCC-CCccc-CCcCCEEEEEe
Confidence 5999999999999999999832 22221222111 111234567889999999999998654 45678 99998443 6
Q ss_pred ecCc------hhHHHHH--HHHHCCCcEEEEccCCCC
Q 041977 108 FLWQ------ELRYIKS--YASAAGVAVMTISIGHAH 136 (158)
Q Consensus 108 v~~~------~s~iiaa--~Av~~g~dVInmSlG~~~ 136 (158)
+++. ...++.+ ++++.+++|||||||...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 79 ASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred ccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 6643 2445555 899999999999999874
No 33
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.75 E-value=1.8e-18 Score=143.26 Aligned_cols=96 Identities=17% Similarity=0.025 Sum_probs=68.0
Q ss_pred EEEEeccccCCCCcCC-CceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE--EecCc--
Q 041977 37 TVTLTDSGICPDSEVE-SKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLWQ-- 111 (158)
Q Consensus 37 ~VaViDTGid~~hp~~-~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~~-- 111 (158)
+||||||||+.+||+. .++.....+... ...+.|.+||||||||||++...++....| ++|+++.. |++..
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~~~~~~~~~---~~~~~d~~gHGT~vAgiia~~~~~~~~~~g-vap~~~l~~~kv~~~~g 77 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALAEDDLDSDE---PGWTADDLGHGTAVAGLALYGDLTLPGNGL-PRPGCRLESVRVLPPNG 77 (291)
T ss_pred EEEEecCCCCCCChhhhhhhccccccccC---CCCcCCCCCChHHHHHHHHcCcccCCCCCC-cccceEEEEEEEcCCCC
Confidence 7999999999999993 333322233221 112678999999999999976655445678 99988443 66643
Q ss_pred -------hhHHHHH--HHHHCC---CcEEEEccCCCC
Q 041977 112 -------ELRYIKS--YASAAG---VAVMTISIGHAH 136 (158)
Q Consensus 112 -------~s~iiaa--~Av~~g---~dVInmSlG~~~ 136 (158)
.++++.+ +|++.. ++|||||||...
T Consensus 78 ~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~ 114 (291)
T cd04847 78 ENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPL 114 (291)
T ss_pred CCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCC
Confidence 3456667 888753 499999999873
No 34
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.75 E-value=1.1e-17 Score=146.40 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=52.1
Q ss_pred CCCCCCCccccccccCCccCCCceeeecccCCeeE--EecCc-------hhHHHHH--HHHHCCCcEEEEccCCCC
Q 041977 72 RDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLWQ-------ELRYIKS--YASAAGVAVMTISIGHAH 136 (158)
Q Consensus 72 ~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~~-------~s~iiaa--~Av~~g~dVInmSlG~~~ 136 (158)
.|+.||||||||||+|+..++..+.| +||+++.. |++.. ..+++.+ +|++.|++|||||||...
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~~~~G-VAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~~~ 256 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEPERNG-VAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGEAT 256 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCceEE-ecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCCcCC
Confidence 36789999999999998766677889 99999543 77653 1356777 899999999999999863
No 35
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.72 E-value=1.5e-17 Score=135.20 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=89.7
Q ss_pred EEEEeccccCCCCcCCC--ceee-----eEeCCCCCCCCCCCCCCCCCCccccccccCCc-cCCCceeeecccCCeeE--
Q 041977 37 TVTLTDSGICPDSEVES--KIIG-----ARYYPSSEAGNYTTRDIENHGTCTSSTTGGNE-VKDVSFFWDWGKVLKEV-- 106 (158)
Q Consensus 37 ~VaViDTGid~~hp~~~--~i~g-----~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~-~~~~~~~G~vapg~~a~-- 106 (158)
+|||||||||++||+.. ++.. .+.|.+.........|..||||||||+|++.. .++....| ++|+++..
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~~~~~~~~~G-va~~a~l~~~ 79 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFIWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNGGNNGPGING-VAPNAKLYSY 79 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEEEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTTSSSSSSETC-SSTTSEEEEE
T ss_pred CEEEEcCCcCCCChhHccCCcccccccceeeccCCCCCcCccccCCCccchhhhhcccccccccccccc-cccccccccc
Confidence 69999999999999933 4443 34555543234556788999999999999997 55666789 99998544
Q ss_pred EecCc----hhHHHHH--HHH-HCCCcEEEEccCC--CCCCCchHHHHHHHHHHHHHhcc
Q 041977 107 VFLWQ----ELRYIKS--YAS-AAGVAVMTISIGH--AHSLNIRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 107 kv~~~----~s~iiaa--~Av-~~g~dVInmSlG~--~~~~~~~~d~i~~~~~~aw~~~~ 157 (158)
|++.. ...++.+ +++ +.+++|||||||. ....+...+.+...++++++.+.
T Consensus 80 ~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~ 139 (282)
T PF00082_consen 80 KIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGI 139 (282)
T ss_dssp ECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTE
T ss_pred ccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCc
Confidence 77654 4566777 788 8999999999988 32334566778888888888764
No 36
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2e-16 Score=137.98 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=78.1
Q ss_pred CCCCcEEEEeccccCCCCcC--CCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCC--eeEE
Q 041977 32 VERDITVTLTDSGICPDSEV--ESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVL--KEVV 107 (158)
Q Consensus 32 ~G~GV~VaViDTGid~~hp~--~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~--~a~k 107 (158)
.|+||..+|+||||+.+||+ .+.+.|+. +... ....|++||||||||+|++.. +| +|+.+ .+.|
T Consensus 217 aG~gvtaYv~DTGVni~H~dFegRa~wGa~-i~~~----~~~~D~nGHGTH~AG~I~sKt------~G-vAK~s~lvaVK 284 (501)
T KOG1153|consen 217 AGKGVTAYVLDTGVNIEHPDFEGRAIWGAT-IPPK----DGDEDCNGHGTHVAGLIGSKT------FG-VAKNSNLVAVK 284 (501)
T ss_pred cCCCeEEEEecccccccccccccceecccc-cCCC----CcccccCCCcceeeeeeeccc------cc-cccccceEEEE
Confidence 79999999999999999998 33343432 2211 345789999999999999975 78 99988 3448
Q ss_pred ecCc-----hhHHHHH--HHHHC---------CCcEEEEccCCCCCCCchHHHHHHHHHHHHH
Q 041977 108 FLWQ-----ELRYIKS--YASAA---------GVAVMTISIGHAHSLNIRDESIYNDLKFCWQ 154 (158)
Q Consensus 108 v~~~-----~s~iiaa--~Av~~---------g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~ 154 (158)
|+.. .|++|.+ ++++. +..|.|||+|+. .+. ++.-|+++|-+
T Consensus 285 Vl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-~S~----aLn~AV~~A~~ 342 (501)
T KOG1153|consen 285 VLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-RSA----ALNMAVNAASE 342 (501)
T ss_pred EeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-ccH----HHHHHHHHHhh
Confidence 8754 7999999 66654 457999999997 333 44444444433
No 37
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.56 E-value=3.2e-14 Score=110.88 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=75.4
Q ss_pred cEEEEeccccCCCCcC----CCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE--Eec
Q 041977 36 ITVTLTDSGICPDSEV----ESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFL 109 (158)
Q Consensus 36 V~VaViDTGid~~hp~----~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~ 109 (158)
|+|+|||+|++++||+ ........++...........|..+||||||++|++...+... .| ++|+++.. |+.
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~~~~-~g-~a~~a~i~~~~~~ 78 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANNGGG-VG-VAPGAKLIPVKVL 78 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccCcccccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCCCCC-EE-eCCCCEEEEEEEe
Confidence 6899999999999995 1111111222221111134567889999999999998754433 67 88888433 444
Q ss_pred Cc-----hhHHHHH--HHH-HCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHh
Q 041977 110 WQ-----ELRYIKS--YAS-AAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQL 155 (158)
Q Consensus 110 ~~-----~s~iiaa--~Av-~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~ 155 (158)
.. ...++.+ +++ ..+++|||||||..... ....+...++++.+.
T Consensus 79 ~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~ 130 (241)
T cd00306 79 DGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYALAK 130 (241)
T ss_pred cCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHHHh
Confidence 32 4556666 788 89999999999987321 344555555555543
No 38
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.2e-15 Score=132.00 Aligned_cols=119 Identities=19% Similarity=0.278 Sum_probs=91.0
Q ss_pred CcccccccCCCCCcEEEEeccccCCCCcCCCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccC
Q 041977 23 MDPLIKTCNVERDITVTLTDSGICPDSEVESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKV 102 (158)
Q Consensus 23 ~~~~W~~~~~G~GV~VaViDTGid~~hp~~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg 102 (158)
++-+|+.+++|++|+|||+|||+..+||--+++.-..+++. ...-.|..||||.|||+||+.. ...| .|+.
T Consensus 190 Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvKERTNWTN----E~tLdD~lgHGTFVAGvia~~~----ec~g-fa~d 260 (1033)
T KOG4266|consen 190 ADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNVKERTNWTN----EDTLDDNLGHGTFVAGVIAGRN----ECLG-FASD 260 (1033)
T ss_pred hhhHHhccccCCceEEEEeecccccCCccccchhhhcCCcC----ccccccCcccceeEeeeeccch----hhcc-cCCc
Confidence 56799999999999999999999999998544433223332 2455678899999999999874 2468 9998
Q ss_pred Cee--EEecCc-----hhHHHHH--HHHHCCCcEEEEccCCCCCCCchHHHHHHHHHHHHHhc
Q 041977 103 LKE--VVFLWQ-----ELRYIKS--YASAAGVAVMTISIGHAHSLNIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 103 ~~a--~kv~~~-----~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~ 156 (158)
+.. .+|+.+ +|..+.| +||...+||+|+|+|++. +.+- -.++.+|++-
T Consensus 261 ~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD---fmD~---PFVeKVwElt 317 (1033)
T KOG4266|consen 261 TEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD---FMDL---PFVEKVWELT 317 (1033)
T ss_pred cceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc---cccc---hHHHHHHhhc
Confidence 843 366644 7899999 999999999999999983 2211 2467788763
No 39
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.6e-13 Score=112.03 Aligned_cols=129 Identities=15% Similarity=0.110 Sum_probs=86.0
Q ss_pred Ccccccc--cCCCCCcEEEEeccccCCCCcCC-CceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCc-cCCCceeee
Q 041977 23 MDPLIKT--CNVERDITVTLTDSGICPDSEVE-SKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNE-VKDVSFFWD 98 (158)
Q Consensus 23 ~~~~W~~--~~~G~GV~VaViDTGid~~hp~~-~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~-~~~~~~~G~ 98 (158)
....|.. ..+|+||+++|||+||+..||+. .......+|.+...+ ....|.++|||||++++++.. .+.....|
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~hGt~vag~ia~~~~~~~~~~~g- 206 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAGGDFVDGDPE-PPFLDDNGHGTHVAGTIAAVIFDNGAGVAG- 206 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhcccccccccccCCCC-CCCCCCCCCcceeeeeeeeecccCCCcccc-
Confidence 4567876 77899999999999999999982 222222345443211 125789999999999999953 34445778
Q ss_pred cccCCee--EEecCc------hhHHHHH--HHHHCC--CcEEEEccCCCCCCCchHHHHHHHHHHHHH
Q 041977 99 WGKVLKE--VVFLWQ------ELRYIKS--YASAAG--VAVMTISIGHAHSLNIRDESIYNDLKFCWQ 154 (158)
Q Consensus 99 vapg~~a--~kv~~~------~s~iiaa--~Av~~g--~dVInmSlG~~~~~~~~~d~i~~~~~~aw~ 154 (158)
++|+... .|++.. .++++.+ ++++.+ +++||||+|.. ........+..++++++.
T Consensus 207 ~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~ 273 (508)
T COG1404 207 VAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-LSDSASPALGDALAAAAN 273 (508)
T ss_pred ccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHH
Confidence 8888732 255542 4555555 889998 99999999985 222233444444444443
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.2e-11 Score=115.82 Aligned_cols=83 Identities=12% Similarity=-0.007 Sum_probs=60.6
Q ss_pred CCCCCccccccccCCccCCCceeeecccCCeeE--EecCc-------hhHHHHH--HHHHCCCcEEEEccCCCCCCCchH
Q 041977 74 IENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLWQ-------ELRYIKS--YASAAGVAVMTISIGHAHSLNIRD 142 (158)
Q Consensus 74 ~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~~-------~s~iiaa--~Av~~g~dVInmSlG~~~~~~~~~ 142 (158)
..-|||||||||+|+-......-| +|||++.. ++-+. ...+..| .++++.+||||||||-....|..-
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~~NG-vAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a~~pn~G 387 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPELNG-VAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDAHLPNSG 387 (1304)
T ss_pred CCCCcceehhhhccCCCCCccccC-CCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccCCCCCcc
Confidence 345999999999998755545678 99999543 44433 2344455 889999999999999876566655
Q ss_pred HHHHHHHHHHHHhcc
Q 041977 143 ESIYNDLKFCWQLRF 157 (158)
Q Consensus 143 d~i~~~~~~aw~~~~ 157 (158)
..+...-+.+|+.+.
T Consensus 388 RviEl~~e~vnKr~v 402 (1304)
T KOG1114|consen 388 RVIELLRELVNKRGV 402 (1304)
T ss_pred hHHHHHHHHhhhccE
Confidence 666666677887653
No 41
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.08 E-value=1.2e-10 Score=95.74 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=59.2
Q ss_pred EEeccccCCCCcCCCceeeeEeCCCCCCCCCCCCCCCCCCccccccccCCccCCCceeeecccCCeeE-EecCc--hhHH
Q 041977 39 TLTDSGICPDSEVESKIIGARYYPSSEAGNYTTRDIENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV-VFLWQ--ELRY 115 (158)
Q Consensus 39 aViDTGid~~hp~~~~i~g~~~~~~~~~~~~~~~D~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~-kv~~~--~s~i 115 (158)
+++|.+....+|. .. .+.|.....-.....|.+||||||||||+|.. + .+|++... ..+.. .+.+
T Consensus 5 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~HGThVAgiiag~~-------~-~~p~a~~~~~~~~~~~~~~~ 72 (247)
T cd07488 5 FLWDKNDSKNAPN-TL---AAVFIRNNPRFGRNNTFDDHATLVASIMGGRD-------G-GLPAVNLYSSAFGIKSNNGQ 72 (247)
T ss_pred cccccccccCccc-ee---eeeeccccccccCCCCCCCHHHHHHHHHHhcc-------C-CCCccceehhhhCCCCCCcc
Confidence 4577777776663 10 11121111000145689999999999999974 3 45666322 11111 2334
Q ss_pred HHH--HH--HHCCCcEEEEccCCCCCCC-----chHHHHHHHHHHHHH
Q 041977 116 IKS--YA--SAAGVAVMTISIGHAHSLN-----IRDESIYNDLKFCWQ 154 (158)
Q Consensus 116 iaa--~A--v~~g~dVInmSlG~~~~~~-----~~~d~i~~~~~~aw~ 154 (158)
+.+ |+ .+.+++|||||||...... +-.+.+++++.++.+
T Consensus 73 ~~~i~~~~~~~~gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~ 120 (247)
T cd07488 73 WQECLEAQQNGNNVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSR 120 (247)
T ss_pred HHHHHHHHHhcCCceEEEeCCccCCCCCccccccccchHHHHHHHHHh
Confidence 444 66 6789999999999863322 122456666665543
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.7e-08 Score=87.88 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=81.4
Q ss_pred ccCCCcccccccc-ccCC--CCCcccccccCCCCCcEEEEeccccCCCCcC---CCceeeeEeCCCCCCCCCCCC--C--
Q 041977 4 MAGNTLQLHKRDL-GILY--VSMDPLIKTCNVERDITVTLTDSGICPDSEV---ESKIIGARYYPSSEAGNYTTR--D-- 73 (158)
Q Consensus 4 ~~~~~~~l~tt~l-g~~~--~~~~~~W~~~~~G~GV~VaViDTGid~~hp~---~~~i~g~~~~~~~~~~~~~~~--D-- 73 (158)
|+-|+|...|-.- |.+. -+-.++|..+++|++|+++|.|.|||+-||+ +-.-.-.++|.+.+ +...|+ |
T Consensus 128 f~~qwylkntgqaggk~rldlnv~~awa~g~tgknvttaimddgvdymhpdlk~nynaeasydfssnd-pfpyprytddw 206 (629)
T KOG3526|consen 128 FTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNYNAEASYDFSSND-PFPYPRYTDDW 206 (629)
T ss_pred cceeeeeecccccCCcccccccHHHHHhhcccCCCceEEeecCCchhcCcchhcccCceeecccccCC-CCCCCcccchh
Confidence 5556665555411 1111 1246799999999999999999999999999 22222334555432 222222 3
Q ss_pred CCCCCccccccccCCccCCCceeeecccCCeeE--EecCc--hhHHHHHHHHH---CCCcEEEEccCCC
Q 041977 74 IENHGTCTSSTTGGNEVKDVSFFWDWGKVLKEV--VFLWQ--ELRYIKSYASA---AGVAVMTISIGHA 135 (158)
Q Consensus 74 ~~GHGTHvAgiiag~~~~~~~~~G~vapg~~a~--kv~~~--~s~iiaa~Av~---~g~dVInmSlG~~ 135 (158)
-+.|||-|||-+++...++.--.| ||...+.- +.++. -.|+|.|-.+. ..++|-+-|||-.
T Consensus 207 fnshgtrcagev~aardngicgvg-vaydskvagirmldqpymtdlieansmghep~kihiysaswgpt 274 (629)
T KOG3526|consen 207 FNSHGTRCAGEVVAARDNGICGVG-VAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPT 274 (629)
T ss_pred hhccCccccceeeeeccCCceeee-eeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcC
Confidence 378999999998887766654456 66554211 33333 45666552222 2468999999965
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=95.87 E-value=0.018 Score=49.58 Aligned_cols=60 Identities=10% Similarity=-0.144 Sum_probs=42.9
Q ss_pred eeecccCCeeE--EecCc-hhHHHHH--HHHHC---CCcEEEEccCCCCCC--CchHHHHHHHHHHHHHhc
Q 041977 96 FWDWGKVLKEV--VFLWQ-ELRYIKS--YASAA---GVAVMTISIGHAHSL--NIRDESIYNDLKFCWQLR 156 (158)
Q Consensus 96 ~G~vapg~~a~--kv~~~-~s~iiaa--~Av~~---g~dVInmSlG~~~~~--~~~~d~i~~~~~~aw~~~ 156 (158)
.| +||+++.. ++++. ....+.+ +++++ +++|||||||..... ..+.+.+.+.++++..++
T Consensus 84 ~g-vAP~a~i~~~~~~~~~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 84 GA-IAPGANITLYFAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred Hh-ccCCCeEEEEEECCcCccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 57 99998544 66654 3455555 78877 999999999987332 245678888888887765
No 44
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.086 Score=46.96 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=53.1
Q ss_pred CcccccccCCCCCcEEEEeccccCCCCcC---CCceeeeEeCCCCCCC---CCCCCCCCCCCccccccccCCccCCCcee
Q 041977 23 MDPLIKTCNVERDITVTLTDSGICPDSEV---ESKIIGARYYPSSEAG---NYTTRDIENHGTCTSSTTGGNEVKDVSFF 96 (158)
Q Consensus 23 ~~~~W~~~~~G~GV~VaViDTGid~~hp~---~~~i~g~~~~~~~~~~---~~~~~D~~GHGTHvAgiiag~~~~~~~~~ 96 (158)
...+|....+|.++.++++|.|+...||+ +....+..++.+...+ -.+....+.|||-|++-.+....+..=..
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~~~~~s~d~~~~~~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C~v 101 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNYDPLGSYDVNRHDNDPEPRCDGTNENKHGTRCAGCVAARANNLTCGV 101 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccccCcceeEeeecCCCCcccccCCCCccccCCCCCcccccccCCCcCCC
Confidence 45799999999999999999999999998 3333444444432211 12222358899999999988753322223
Q ss_pred eecccCC
Q 041977 97 WDWGKVL 103 (158)
Q Consensus 97 G~vapg~ 103 (158)
| ++++.
T Consensus 102 g-~~~~~ 107 (431)
T KOG3525|consen 102 G-VAYNA 107 (431)
T ss_pred C-cccCc
Confidence 4 44444
No 45
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=32.96 E-value=21 Score=28.82 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=36.6
Q ss_pred ccccCCCcccccc----ccccCCCCCcccccccCCCCCcEEEEeccccCCC
Q 041977 2 QNMAGNTLQLHKR----DLGILYVSMDPLIKTCNVERDITVTLTDSGICPD 48 (158)
Q Consensus 2 ~v~~~~~~~l~tt----~lg~~~~~~~~~W~~~~~G~GV~VaViDTGid~~ 48 (158)
+-|++|++.+|.. |=|+.. -.++|..+.+-.|.+|=.+|.|+|..
T Consensus 98 ~~~~grIlNIHPSLLP~f~G~h~--~~~A~~aG~k~sG~TVH~V~e~vD~G 146 (200)
T COG0299 98 SRFEGRILNIHPSLLPAFPGLHA--HEQALEAGVKVSGCTVHFVTEGVDTG 146 (200)
T ss_pred HHhhcceEecCcccccCCCCchH--HHHHHHcCCCccCcEEEEEccCCCCC
Confidence 4589999999999 666543 24688888888999999999999965
No 46
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.55 E-value=21 Score=30.61 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=19.8
Q ss_pred cEEEEccCCCCCCCchHHHHHHHHHHHHHhccC
Q 041977 126 AVMTISIGHAHSLNIRDESIYNDLKFCWQLRFL 158 (158)
Q Consensus 126 dVInmSlG~~~~~~~~~d~i~~~~~~aw~~~~~ 158 (158)
--||+||-.. ..+..+=+.+...||.|||
T Consensus 45 LEiSLSFDNA----IvNA~iLk~MS~~Wqk~FL 73 (346)
T COG2899 45 LEISLSFDNA----IVNAAILKDMSPFWQKRFL 73 (346)
T ss_pred hhhheechHH----HhhHHHHHhccHHHHHHHH
Confidence 3455555432 5566677778899999996
No 47
>KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism]
Probab=25.06 E-value=60 Score=27.96 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=24.2
Q ss_pred CcEEEEccCCCC-CCCchHHHHHHHHHHHHHhcc
Q 041977 125 VAVMTISIGHAH-SLNIRDESIYNDLKFCWQLRF 157 (158)
Q Consensus 125 ~dVInmSlG~~~-~~~~~~d~i~~~~~~aw~~~~ 157 (158)
.=|||=|=|--+ ..|.-..-+++..+.|||||=
T Consensus 334 kwvinpsggliskghplgatglaqcaelcwqlrg 367 (408)
T KOG1406|consen 334 KWVINPSGGLISKGHPLGATGLAQCAELCWQLRG 367 (408)
T ss_pred eEEECCCCccccCCCcCccchHHHHHHHHHHHhh
Confidence 348888866421 345556789999999999984
No 48
>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability. The molecular architecture of TRP channels is reminiscent of voltage-gated channels and comprises six putative transmembrane segments (S1-S6), intracellular N- and C-termini, and a pore-forming reentrant loop between S5 and S6 []. TRP channels represent a superfamily conserved from worms to humans that comprise seven subfamilies []: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin or long TRPs), TRPA (ankyrin), whose only member is the transmembrane protein 1, TRPP(polycystin), TRPML (mucolipin) and TRPN (Nomp-C homologues), which has a single member that can be found in worms, flies, and zebrafish. TRPs are classified essentially according to their primary amino acid sequence rather than selectivity or ligand affinity, due to their heterogenous properties and complex regulation. TRP channels are involved in many physiological functions, ranging from pure sensory functions, such as pheromone signalling, taste transduction, nociception, and temperature sensation, over homeostatic functions, such as Ca2+ and Mg2+ reabsorption and osmoregulation, to many other motile functions, such as muscle contraction and vaso-motor control []. This domain is found in Trp proteins, generally located to the C terminus of the Ankyrin repeats (IPR002110 from INTERPRO).
Probab=23.07 E-value=54 Score=21.61 Aligned_cols=16 Identities=31% Similarity=0.792 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhcc
Q 041977 142 DESIYNDLKFCWQLRF 157 (158)
Q Consensus 142 ~d~i~~~~~~aw~~~~ 157 (158)
.|||..+++..|+|+-
T Consensus 39 ~DPi~~AF~Ls~eL~~ 54 (63)
T PF08344_consen 39 DDPILTAFELSWELRE 54 (63)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 5999999999999973
Done!