BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041978
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82773|DF182_ARATH Defensin-like protein 182 OS=Arabidopsis thaliana GN=PDF3.2 PE=2
SV=1
Length = 129
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 1 LLIQLINLRGNVVHTIKGDTCQEGLGQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCT 60
++ L+ + +VV+ +GDTC +GLG C N+CD CK +H + SCDR++ PLC
Sbjct: 9 FIVNLLIIFTSVVNQARGDTCIDGLGYC---NNCDERCKAKHGPSSESSCDRSVGVPLCK 65
Query: 61 CFYPCGSPSKRPSSPKKCTAGLGACDQ-CRDLCCNGKCAAQFKGGQGFCDNIGAQYLCQC 119
C+Y C SP P+ PKKC G G C Q C+ CC+ CA ++ GG GFC+ +G CQC
Sbjct: 66 CYYECESPPSPPAPPKKCDGGAGICSQRCQGQCCDMNCAQKYIGGHGFCNTLGTFSFCQC 125
Query: 120 TYDC 123
Y C
Sbjct: 126 EYPC 129
>sp|P82733|DF183_ARATH Defensin-like protein 183 OS=Arabidopsis thaliana GN=LCR19 PE=2
SV=1
Length = 126
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 1 LLIQLINLRGNVVHTIKGDTCQEGLGQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCT 60
+ I + +V + + +TC EG+G C CD+ CK RH +G+CD Q LCT
Sbjct: 9 VFIIFSIMLASVENKVNANTCIEGIGNC---QQCDVRCKARHGPAAKGACDSKFQ--LCT 63
Query: 61 CFYPCGS-PSKRPSSPKKCTAGLGAC-DQCRDLCCNGKCAAQFKGGQGFCDNIGAQYLCQ 118
C YPCG PS P PKKC G G C D+C CCN CA ++ G GFCD+IG LC+
Sbjct: 64 CNYPCGQGPS--PPQPKKCYGGAGICSDRCGAQCCNQNCAQKYNQGSGFCDSIGNTSLCK 121
Query: 119 CTYDC 123
C Y+C
Sbjct: 122 CQYNC 126
>sp|P82789|DF181_ARATH Defensin-like protein 181 OS=Arabidopsis thaliana GN=PDF3.1 PE=2
SV=2
Length = 122
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 2 LIQLINLRGNVVHTIKGDTCQEGLGQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTC 61
L+ L+ + VV+ + C + LG C + CD CK +H + CD + LCTC
Sbjct: 10 LVSLLIIFATVVNQTRASICNDRLGLC---DGCDQRCKAKHGPSCESKCDGPVGMLLCTC 66
Query: 62 FYPCGSPSKRPSSPKKCTAGLGAC-DQCRDLCCNGKCAAQFKGGQGFCDNIGAQYLCQCT 120
Y CG K C GLG C + C + CC+ CA ++ GG G+C+ + LC C
Sbjct: 67 TYECGPT-------KLCNGGLGNCGESCNEQCCDRNCAQRYNGGHGYCNTLDDFSLCLCK 119
Query: 121 YDC 123
Y C
Sbjct: 120 YPC 122
>sp|P82772|DF180_ARATH Putative defensin-like protein 180 OS=Arabidopsis thaliana GN=LCR58
PE=3 SV=1
Length = 127
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 1 LLIQLINLRGNVVHTIKGDTCQEGLGQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCT 60
+ + + V+ + D+C E LG C CD C+ +H CD + CT
Sbjct: 9 FFASFLIIFVSGVNQTRADSCDESLGLC---ETCDERCQAKHGPSCISKCDGEVGMLSCT 65
Query: 61 CFYPCGSPSKRPSSPKKCTAGLGACD-QCRDLCCNGKCAAQFKGGQGFCDNIGAQYLCQC 119
C Y CG P P C+ G G C +C CC+ CA ++ GG+GFC++ G CQC
Sbjct: 66 CTYECGPP--LPPKGNVCSGGTGMCSGKCPYKCCDTSCAQKYNGGRGFCNSFGNYNFCQC 123
Query: 120 TYDC 123
Y C
Sbjct: 124 EYPC 127
>sp|P82771|DF179_ARATH Putative defensin-like protein 179 OS=Arabidopsis thaliana GN=LCR57
PE=3 SV=1
Length = 120
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 10 GNVVHTIKGDTCQEGLGQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCFYPCGSPS 69
+ V+ I+ TC E L C +CD CK +H C+ C F P
Sbjct: 19 ASAVNQIRAQTCDENLSSC---ENCDQRCKAKHGPSSVSKCNGPDGTCGCASFKP----- 70
Query: 70 KRPSSPKKCTAGLGAC-DQCRDLCCNGKCAAQFKGGQGFCDNIGAQYLCQCTYDC 123
K C C D+C CC+ +CA ++K G+G C + +C C Y C
Sbjct: 71 -----AKLCIGATDMCTDKCPTSCCDRQCAIKYKNGKGGCVDYAGYRMCICEYTC 120
>sp|P82775|DF171_ARATH Defensin-like protein 171 OS=Arabidopsis thaliana GN=LCR61 PE=3
SV=1
Length = 78
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 21 CQEGLGQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCFYPCGSPSKRP 72
C LG CG DC C +R Q +G CDR C C YPC P+ +P
Sbjct: 27 CMAVLGSCGVITDCSGECISRFGPQARGYCDRDGGSGTCVCVYPC--PADKP 76
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 78 CTAGLGACDQCRDLCCNGKCAAQF-KGGQGFCDNIGAQYLCQCTYDC 123
C A LG+C D C+G+C ++F +G+CD G C C Y C
Sbjct: 27 CMAVLGSCGVITD--CSGECISRFGPQARGYCDRDGGSGTCVCVYPC 71
>sp|P82776|DF170_ARATH Putative defensin-like protein 170 OS=Arabidopsis thaliana
GN=LCR62 PE=3 SV=2
Length = 78
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 20/45 (44%)
Query: 21 CQEGLGQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCFYPC 65
C LG CG DC CKT+ G CDR C C YPC
Sbjct: 27 CMAVLGSCGVITDCSGSCKTKFGQDASGDCDRDGGQGTCMCGYPC 71
>sp|Q8BYI9|TENR_MOUSE Tenascin-R OS=Mus musculus GN=Tnr PE=1 SV=2
Length = 1358
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 28/128 (21%)
Query: 10 GNVVHTIKGDTCQEG-LGQCGASNDCDLHCKTRHAG-QGQGSCDRTIQPPLCT---CFYP 64
GN G C EG G+ + C L C +R GQ CD C+ C
Sbjct: 179 GNFSFESCGCICNEGWFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTD 238
Query: 65 CGSPSKRPSSPKKCTAGLGACDQ------CRDLCCNGKCAAQFKGGQGFCDNIGAQYLCQ 118
C SS C G C++ CR+L C G C+ + + G C LCQ
Sbjct: 239 C-------SSRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGQCANGTC-------LCQ 284
Query: 119 CTY---DC 123
Y DC
Sbjct: 285 EGYAGEDC 292
>sp|Q05546|TENR_RAT Tenascin-R OS=Rattus norvegicus GN=Tnr PE=1 SV=1
Length = 1356
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 28/128 (21%)
Query: 10 GNVVHTIKGDTCQEG-LGQCGASNDCDLHCKTRHAG-QGQGSCDRTIQPPLCT---CFYP 64
GN G C EG G+ + C L C +R GQ CD C+ C
Sbjct: 179 GNFSFESCGCICNEGWFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTD 238
Query: 65 CGSPSKRPSSPKKCTAGLGACDQ------CRDLCCNGKCAAQFKGGQGFCDNIGAQYLCQ 118
C SS C G C++ CR+L C G C+ + + G C LCQ
Sbjct: 239 C-------SSRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGQCANGTC-------LCQ 284
Query: 119 CTY---DC 123
Y DC
Sbjct: 285 EGYAGEDC 292
>sp|Q92752|TENR_HUMAN Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3
Length = 1358
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 10 GNVVHTIKGDTCQEG-LGQCGASNDCDLHCKTRHAG-QGQGSCDRTIQPPLCT---CFYP 64
GN G C EG G+ + C L C +R GQ CD C+ C
Sbjct: 179 GNFSFESCGCICNEGWFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTD 238
Query: 65 CGSPSKRPSSPKKCTAGLGACDQ------CRDLCCNGKCAAQFKGGQGFC 108
C SS C G C++ CR+L C G C+ + + G C
Sbjct: 239 C-------SSRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGRCANGTC 281
>sp|O24332|DEF3_RAPSA Defensin-like protein 3 OS=Raphanus sativus GN=AFP3 PE=3 SV=1
Length = 79
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 26 GQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCFYPC 65
G CG +N C C R G GSC+ C C++PC
Sbjct: 41 GVCGNNNACKNQC-IRLEGAQHGSCNYVFPAHKCICYFPC 79
>sp|Q39313|DEF3_BRANA Defensin-like protein 3 OS=Brassica napus GN=AFP3 PE=3 SV=1
Length = 79
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 26 GQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCFYPC 65
G CG +N C C R G GSC+ C C++PC
Sbjct: 41 GVCGNNNACKNQC-IRLEGAQHGSCNYVFPAHKCICYFPC 79
>sp|O80995|DEF14_ARATH Defensin-like protein 14 OS=Arabidopsis thaliana GN=PDF1.3 PE=2
SV=1
Length = 80
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 26 GQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCFYPC 65
G CG SN C C G GSC+ C C++PC
Sbjct: 42 GVCGNSNACKNQCINLE-GAKHGSCNYVFPAHKCICYFPC 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.501
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,062,752
Number of Sequences: 539616
Number of extensions: 2161815
Number of successful extensions: 5778
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 5402
Number of HSP's gapped (non-prelim): 487
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)