Query 041978
Match_columns 123
No_of_seqs 52 out of 54
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07333 SLR1-BP: S locus-rela 97.8 2.1E-05 4.5E-10 50.6 3.0 46 78-123 11-58 (58)
2 PF07333 SLR1-BP: S locus-rela 96.8 0.0013 2.8E-08 42.1 2.7 44 20-65 10-58 (58)
3 PF10868 DUF2667: Protein of u 96.7 0.00093 2E-08 47.6 2.1 50 15-64 26-80 (90)
4 PF00304 Gamma-thionin: Gamma- 91.9 0.066 1.4E-06 33.1 0.6 38 24-65 10-47 (47)
5 cd00107 Knot1 The "knottin" fo 84.7 0.97 2.1E-05 25.8 2.2 33 26-62 1-33 (33)
6 PF00451 Toxin_2: Scorpion sho 82.5 0.64 1.4E-05 27.2 0.9 30 28-62 3-32 (32)
7 smart00505 Knot1 Knottins. Kno 76.5 3.4 7.3E-05 24.4 2.7 35 25-63 10-45 (45)
8 PF01097 Defensin_2: Arthropod 71.1 3.1 6.8E-05 24.5 1.6 27 31-62 8-34 (34)
9 PF00537 Toxin_3: Scorpion tox 58.5 4.1 9E-05 26.1 0.5 31 31-63 18-49 (54)
10 PF07127 Nodulin_late: Late no 45.2 3.5 7.6E-05 25.9 -1.4 32 2-40 11-42 (54)
11 KOG3658 Tumor necrosis factor- 40.9 25 0.00054 33.4 2.8 39 47-95 544-584 (764)
12 PF14866 Toxin_38: Potassium c 39.4 16 0.00035 24.0 1.0 25 32-63 30-54 (56)
13 PF05453 Toxin_6: BmTXKS1/BmP0 26.9 28 0.0006 20.0 0.5 23 33-62 5-27 (28)
14 PF11119 DUF2633: Protein of u 24.5 10 0.00022 25.2 -1.9 10 1-10 14-23 (59)
15 PF11415 Toxin_37: Antifungal 23.1 34 0.00074 20.6 0.4 29 32-64 4-33 (35)
16 PF02950 Conotoxin: Conotoxin; 22.9 28 0.0006 22.4 0.0 10 1-10 6-15 (75)
No 1
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins. Adhesion of pollen grains to the stigmatic surface is a critical step during sexual reproduction in plants. In Brassica, S locus-related glycoprotein 1 (SLR1), a stigma-specific protein belonging to the S gene family of proteins, has been shown to be involved in this step. SLR1-BP specifically binds SLR1 with high affinity. The SLR1-BP gene is specifically expressed in pollen at late stages of development and is a member of the class A pollen coat protein (PCP) family, which includes PCP-A1, an SLG (S locus glycoprotein)-binding protein []. This entry also includes defensin-like proteins. The function of these proteins is uncharacterised.
Probab=97.80 E-value=2.1e-05 Score=50.56 Aligned_cols=46 Identities=33% Similarity=0.758 Sum_probs=37.3
Q ss_pred cccccccC-ccCCcchhhHHHHhcccCceeeeee-cCCccceEEEecC
Q 041978 78 CTAGLGAC-DQCRDLCCNGKCAAQFKGGQGFCDN-IGAQYLCQCTYDC 123 (123)
Q Consensus 78 C~~G~GlC-~~C~~~CCn~~Ca~kY~~G~G~C~~-~~~~~~C~C~Y~C 123 (123)
|..-+-+= ..|..+=|++.|++||+.+.|.|.. ..+...|+|+|+|
T Consensus 11 C~~~l~~~~~~C~~~~C~~~C~~k~~g~~G~C~~~~~~~~~C~C~Y~C 58 (58)
T PF07333_consen 11 CHEVLPNKPGPCDPQDCRSLCKKKYKGGVGTCIPKPKGPKQCLCTYNC 58 (58)
T ss_pred CceeCccCCCCCChHHHHHHHHHHcCCCceEeccCCCCCCeeEEEeeC
Confidence 55554444 5677778999999999999999999 5555899999998
No 2
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins. Adhesion of pollen grains to the stigmatic surface is a critical step during sexual reproduction in plants. In Brassica, S locus-related glycoprotein 1 (SLR1), a stigma-specific protein belonging to the S gene family of proteins, has been shown to be involved in this step. SLR1-BP specifically binds SLR1 with high affinity. The SLR1-BP gene is specifically expressed in pollen at late stages of development and is a member of the class A pollen coat protein (PCP) family, which includes PCP-A1, an SLG (S locus glycoprotein)-binding protein []. This entry also includes defensin-like proteins. The function of these proteins is uncharacterised.
Probab=96.76 E-value=0.0013 Score=42.12 Aligned_cols=44 Identities=39% Similarity=0.921 Sum_probs=35.5
Q ss_pred ccccccc----CCCCCccchHHhhhccCCCCcccccC-CCCCCccEEEcCC
Q 041978 20 TCQEGLG----QCGASNDCDLHCKTRHAGQGQGSCDR-TIQPPLCTCFYPC 65 (123)
Q Consensus 20 tCt~~lG----~C~~~~dC~~~Ck~~~~~~~~g~Cd~-~~g~nlCtC~Y~C 65 (123)
+|.++|- .|+ ..+|.+.|+.+|++ +.|.|.. ..+...|+|+|+|
T Consensus 10 ~C~~~l~~~~~~C~-~~~C~~~C~~k~~g-~~G~C~~~~~~~~~C~C~Y~C 58 (58)
T PF07333_consen 10 QCHEVLPNKPGPCD-PQDCRSLCKKKYKG-GVGTCIPKPKGPKQCLCTYNC 58 (58)
T ss_pred cCceeCccCCCCCC-hHHHHHHHHHHcCC-CceEeccCCCCCCeeEEEeeC
Confidence 3888876 788 48999999999987 4499975 3455679999987
No 3
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=96.74 E-value=0.00093 Score=47.59 Aligned_cols=50 Identities=28% Similarity=0.641 Sum_probs=39.1
Q ss_pred eeecc-cccccccCCCC-CccchHHhhhccCCCCcccccCCC---CCCccEEEcC
Q 041978 15 TIKGD-TCQEGLGQCGA-SNDCDLHCKTRHAGQGQGSCDRTI---QPPLCTCFYP 64 (123)
Q Consensus 15 ~V~g~-tCt~~lG~C~~-~~dC~~~Ck~~~~~~~~g~Cd~~~---g~nlCtC~Y~ 64 (123)
+|+|. .|...+|.|+. +.+|++.||.+++.-..|.|.+.. +...|.|.|.
T Consensus 26 eV~G~~~cd~~~G~C~~~~~~C~~~Ck~~~~~y~GG~C~~~~~~~~~~~C~Cc~~ 80 (90)
T PF10868_consen 26 EVDGRLKCDSPFGACTPFSSDCNEPCKKFGSNYYGGQCVPVGPPPGDGVCYCCYY 80 (90)
T ss_pred eeCCeEccCcccccCCchHHHHHHHHHhhccCCCCceeccCCCCCCCcEEEEecc
Confidence 57763 69889999998 489999999987554679998622 2467999996
No 4
>PF00304 Gamma-thionin: Gamma-thionin family; InterPro: IPR008176 The following small plant proteins are evolutionary related: Gamma-thionins from Triticum aestivum (Wheat) endosperm (gamma-purothionins) and gamma-hordothionins from Hordeum vulgare(Barley) are toxic to animal cells and inhibit protein synthesis in cell free systems []. A flower-specific thionin (FST) from Nicotiana tabacum (Common Tobacco)[]. Antifungal proteins (AFP) from the seeds of Brassicaceae species such as radish, mustard, turnip and Arabidopsis thaliana (Thale Cress)[]. Inhibitors of insect alpha-amylases from sorghum []. Probable protease inhibitor P322 from Solanum tuberosum (Potato). A germination-related protein from Vigna unguiculata (Cowpea) []. Anther-specific protein SF18 from sunflower. SF18 is a protein that contains a gamma-thionin domain at its N terminus and a proline-rich C-terminal domain. Glycine max (Soybean) sulphur-rich protein SE60 []. Vicia faba (Broad bean) antibacterial peptides fabatin-1 and -2. In their mature form, these proteins generally consist of about 45 to 50 amino-acid residues. As shown in the following schematic representation, these peptides contain eight conserved cysteines involved in disulphide bonds. +-------------------------------------------+ | +-------------------+ | | | | | xxCxxxxxxxxxxCxxxxxCxxxCxxxxxxxxxCxxxxxxCxCxxxC | | | | +---|----------------+ | +------------------+ 'C': conserved cysteine involved in a disulphide bond. The folded structure of Gamma-purothionin is characterised by a well-defined 3-stranded anti-parallel beta-sheet and a short alpha-helix []. Three disulphide bridges are located in the hydrophobic core between the helix and sheet, forming a cysteine-stabilised alpha-helical motif. This structure differs from that of the plant alpha- and beta- thionins, but is analogous to scorpion toxins and insect defensins.; GO: 0006952 defense response; PDB: 4AB0_A 4AAZ_B 1N4N_A 2KPY_A 1JKZ_A 1AYJ_A 1GPT_A 1BK8_A 2GL1_A 1GPS_A ....
Probab=91.85 E-value=0.066 Score=33.15 Aligned_cols=38 Identities=26% Similarity=0.592 Sum_probs=28.4
Q ss_pred cccCCCCCccchHHhhhccCCCCcccccCCCCCCccEEEcCC
Q 041978 24 GLGQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCFYPC 65 (123)
Q Consensus 24 ~lG~C~~~~dC~~~Ck~~~~~~~~g~Cd~~~g~nlCtC~Y~C 65 (123)
.-|.|....+|+.+|+.... ..|+|... ...|+|+++|
T Consensus 10 f~G~C~~~~~C~~~C~~eg~--~~G~C~~~--~~~C~C~~~C 47 (47)
T PF00304_consen 10 FKGLCFSDSNCANVCINEGF--TGGKCSGP--LRRCFCTKPC 47 (47)
T ss_dssp S-SS-SSHHHHHHHHHHCTS--SEEEEETT--TTEEEEEEEE
T ss_pred ceeECCCcchhhHHhccCCC--CCCEeCCC--CceEEEeCcC
Confidence 35788766789999999764 48999952 4679999976
No 5
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.
Probab=84.66 E-value=0.97 Score=25.75 Aligned_cols=33 Identities=30% Similarity=0.770 Sum_probs=22.6
Q ss_pred cCCCCCccchHHhhhccCCCCcccccCCCCCCccEEE
Q 041978 26 GQCGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCF 62 (123)
Q Consensus 26 G~C~~~~dC~~~Ck~~~~~~~~g~Cd~~~g~nlCtC~ 62 (123)
|.|.....|+..||.. + ...|.|... ...|+|+
T Consensus 1 g~C~~~~~C~~~Ck~~-g-~~~G~C~~~--~~~C~C~ 33 (33)
T cd00107 1 GTCFSDSYCDKECKKK-G-ASGGYCYGQ--GLACWCY 33 (33)
T ss_pred CcCCCchhHHHHHhHc-C-CCccEeCCC--CCeEEeC
Confidence 3565556799999987 3 367999751 2458874
No 6
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans. Among these peptides there is a family of short toxins (30 to 40 residues) [, ] including charybdotoxin, kaliotoxin [], noxiustoxin [] and iberiotoxin [, ]. Charybdotoxin consists of a single polypeptide chain and is a potent, selective inhibitor of calcium-activated potassium channels in pituitary and aortic smooth muscle cells - the toxin reversibly blocks channel activity by interacting at the external pore of the channel protein[]. The tertiary structure of the toxins comprises a 3-stranded beta-sheet and a short helix, and is stabilised by a number of disulphide bridges [] as shown in the following schematic representation: +---------------------+ | | | | xxxxxxxCxxxxxCxxxCxxxxxxxxxxxCxxxxCxCxxx | | | | | +----------------+ | +----------------------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TSK_A 2PTA_A 1BIG_A 3ODV_A 2UVS_A 2KTX_A 1XSW_A 1KTX_A 1WMT_A 1PNH_A ....
Probab=82.51 E-value=0.64 Score=27.23 Aligned_cols=30 Identities=33% Similarity=0.780 Sum_probs=25.3
Q ss_pred CCCCccchHHhhhccCCCCcccccCCCCCCccEEE
Q 041978 28 CGASNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCF 62 (123)
Q Consensus 28 C~~~~dC~~~Ck~~~~~~~~g~Cd~~~g~nlCtC~ 62 (123)
|..+.+|-..|+..++- ..|.|.+ +.|.|+
T Consensus 3 C~~s~~C~~~Ck~~~g~-~~gKCmN----~kC~Cy 32 (32)
T PF00451_consen 3 CTGSKDCWPPCKKATGC-LNGKCMN----GKCKCY 32 (32)
T ss_dssp TSSHHHHHHHHHHHTSS-SEEEEET----TEEEEE
T ss_pred cCCchHHHHHhhhhhCC-CCCCccC----CCceeC
Confidence 55567899999999985 8899997 689886
No 7
>smart00505 Knot1 Knottins. Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.
Probab=76.50 E-value=3.4 Score=24.44 Aligned_cols=35 Identities=31% Similarity=0.707 Sum_probs=24.8
Q ss_pred ccCCCCCc-cchHHhhhccCCCCcccccCCCCCCccEEEc
Q 041978 25 LGQCGASN-DCDLHCKTRHAGQGQGSCDRTIQPPLCTCFY 63 (123)
Q Consensus 25 lG~C~~~~-dC~~~Ck~~~~~~~~g~Cd~~~g~nlCtC~Y 63 (123)
-|.|..+. .|+..|+.. + ...|+|... ...|+|.+
T Consensus 10 ~g~C~~~~~~C~~~C~~~-g-~~~G~C~~~--~~~C~C~~ 45 (45)
T smart00505 10 SGNCKSSCALCAKLCKKK-G-AKGGYCRGT--TRRCFCYK 45 (45)
T ss_pred CCCccCCchHhHHHhhhc-C-CCCCCcCCc--CCceEeeC
Confidence 46777655 799999998 3 367999641 24698864
No 8
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ]. All these peptides range in length from 38 to 51 amino acids. There are six conserved cysteines all involved in intrachain disulphide bonds. A schematic representation of peptides from the arthropod defensin family is shown below. +----------------------------+ | | xxCxxxxxxxxxxxxxxCxxxCxxxxxxxxxCxxxxxCxCxx | | | | +---|---------------+ | +-----------------+ 'C': conserved cysteine involved in a disulphide bond. Although low level sequence similarities have been reported [] between the arthropod defensins and mammalian defensins, the topological arrangement of the disulphide bonds as well as the tertiary structure [] are completely different in the two families.; GO: 0006952 defense response; PDB: 1FJN_A 1ICA_A 1L4V_A 2LLD_A 3E7R_L 3E7U_X 1ZFU_A 2B68_A 2NZ3_A 2NY8_X ....
Probab=71.10 E-value=3.1 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=21.6
Q ss_pred CccchHHhhhccCCCCcccccCCCCCCccEEE
Q 041978 31 SNDCDLHCKTRHAGQGQGSCDRTIQPPLCTCF 62 (123)
Q Consensus 31 ~~dC~~~Ck~~~~~~~~g~Cd~~~g~nlCtC~ 62 (123)
...|.++|+++. ...|.|.. ...|+|+
T Consensus 8 ~~~C~~hC~~~g--~~GGyC~~---~~vC~Cr 34 (34)
T PF01097_consen 8 HSACAAHCLSIG--YRGGYCNG---KGVCVCR 34 (34)
T ss_dssp CHHHHHHHHHHT--CSEEEEET---TSCEEEE
T ss_pred HHHHHHHHHHhC--CcceeCCC---CCEEEeC
Confidence 456999999994 37899986 5789985
No 9
>PF00537 Toxin_3: Scorpion toxin-like domain ; InterPro: IPR002061 Scorpion toxins, which may be mammal or insect specific, bind to sodium channels, inhibiting the inactivation of activated channels and blocking neuronal transmission. The complete covalent structure of the toxins has been deduced: it comprises around 66 amino acid residues and is cross- linked by 4 disulphide bridges [, ]. An anti-epilepsy peptide isolated from scorpion venom [] shows similarity to both scorpion neurotoxins and anti-insect toxins. This family also contains a group of proteinase inhibitors from Arabidopsis thaliana and Brassica spp., which belong to MEROPS inhibitor family I18, clan I-. The Brassica napus (Oil seed rape) and Sinapis alba (White mustard) inhibitors [, ], inhibit the catalytic activity of bovine beta-trypsin and bovine alpha-chymotrypsin, which belong to MEROPS peptidase family S1 (IPR001254 from INTERPRO) [].; GO: 0008200 ion channel inhibitor activity, 0005576 extracellular region; PDB: 2LI7_A 2LJM_A 2B3C_A 1B3C_A 1WWN_A 1JZA_B 1JZB_A 4AEI_A 1AHO_A 1PTX_A ....
Probab=58.46 E-value=4.1 Score=26.05 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=21.9
Q ss_pred CccchHHhhhccCCCCcccccCCCCC-CccEEEc
Q 041978 31 SNDCDLHCKTRHAGQGQGSCDRTIQP-PLCTCFY 63 (123)
Q Consensus 31 ~~dC~~~Ck~~~~~~~~g~Cd~~~g~-nlCtC~Y 63 (123)
...|+..||. ++ +..|.|.....+ +.|+|.+
T Consensus 18 n~~C~~~Ck~-~g-a~~GyC~~~~~~g~aCwC~~ 49 (54)
T PF00537_consen 18 NEYCNKECKK-KG-AKSGYCYWWGPYGLACWCEG 49 (54)
T ss_dssp HHHHHHHHHH-TT-SSEEEEECTETTEEEEEEEE
T ss_pred cchhhHHHHh-cC-CCccEeeCCCCCCCeEECCC
Confidence 3679999999 44 368999874312 2399986
No 10
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=45.24 E-value=3.5 Score=25.94 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=19.4
Q ss_pred ceeeehheeeeeeeeecccccccccCCCCCccchHHhhh
Q 041978 2 LIQLINLRGNVVHTIKGDTCQEGLGQCGASNDCDLHCKT 40 (123)
Q Consensus 2 ~i~~lvl~a~v~~~V~g~tCt~~lG~C~~~~dC~~~Ck~ 40 (123)
+|+||-||.++.. +. ....|....||+..|..
T Consensus 11 mIiflslflv~~~-~~------~~~~C~~d~DCp~~c~~ 42 (54)
T PF07127_consen 11 MIIFLSLFLVVTN-VD------AIIPCKTDSDCPKDCPP 42 (54)
T ss_pred HHHHHHHHHhhcc-cC------CCcccCccccCCCCCCC
Confidence 3555555555443 22 45678777889988443
No 11
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=40.94 E-value=25 Score=33.38 Aligned_cols=39 Identities=26% Similarity=0.686 Sum_probs=28.6
Q ss_pred cccccCCCCCCccEEEcCCCCCCCCCCCCCccccccccC--ccCCcchhhH
Q 041978 47 QGSCDRTIQPPLCTCFYPCGSPSKRPSSPKKCTAGLGAC--DQCRDLCCNG 95 (123)
Q Consensus 47 ~g~Cd~~~g~nlCtC~Y~C~~~~p~~~~~~~C~~G~GlC--~~C~~~CCn~ 95 (123)
.+.|++..+ +|+ ++||+...-.|. ++|.| .+|-.+||-.
T Consensus 544 ~s~CnG~~a--------eCP-~s~~~~d~t~C~-~~~~C~~G~C~gs~c~~ 584 (764)
T KOG3658|consen 544 ESTCNGFSA--------ECP-PSPPKPDGTVCN-ETGVCINGKCIGSCCLM 584 (764)
T ss_pred cccccCCcc--------CCc-CCCCCCCCCccc-ccceEeCCcCccHHHHh
Confidence 566776544 664 445556788899 99999 9998888764
No 12
>PF14866 Toxin_38: Potassium channel toxin
Probab=39.41 E-value=16 Score=24.03 Aligned_cols=25 Identities=28% Similarity=0.804 Sum_probs=18.5
Q ss_pred ccchHHhhhccCCCCcccccCCCCCCccEEEc
Q 041978 32 NDCDLHCKTRHAGQGQGSCDRTIQPPLCTCFY 63 (123)
Q Consensus 32 ~dC~~~Ck~~~~~~~~g~Cd~~~g~nlCtC~Y 63 (123)
..|..||++.. ..|.|++ ..|.|.-
T Consensus 30 ~~Ce~HC~~~~---~~G~C~~----~kCkC~~ 54 (56)
T PF14866_consen 30 GWCEDHCQAKK---KEGKCHG----TKCKCGK 54 (56)
T ss_pred hHHHHHHHhcC---cCCeecC----cccccCC
Confidence 45888999942 6799997 4687753
No 13
>PF05453 Toxin_6: BmTXKS1/BmP02 toxin family; InterPro: IPR008911 This family consists of several scorpion toxins which act by blocking small conductance calcium activated potassium ion channels in their victim.; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ACW_A 1DU9_A 1WM8_A 2KTC_A 1WM7_A.
Probab=26.89 E-value=28 Score=20.00 Aligned_cols=23 Identities=35% Similarity=1.084 Sum_probs=16.7
Q ss_pred cchHHhhhccCCCCcccccCCCCCCccEEE
Q 041978 33 DCDLHCKTRHAGQGQGSCDRTIQPPLCTCF 62 (123)
Q Consensus 33 dC~~~Ck~~~~~~~~g~Cd~~~g~nlCtC~ 62 (123)
+|+.+|+.+. +.-.|+. ..|.|.
T Consensus 5 ~Cp~hC~~k~---ak~~c~n----~~C~C~ 27 (28)
T PF05453_consen 5 ECPMHCKGKN---AKPTCDN----GKCNCN 27 (28)
T ss_dssp CHHHCCCTTT----EEEEET----TEEEEE
T ss_pred cchhhhcccC---CcccccC----ceeecC
Confidence 5999999985 5677876 467764
No 14
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=24.51 E-value=10 Score=25.20 Aligned_cols=10 Identities=60% Similarity=0.760 Sum_probs=8.2
Q ss_pred Cceeeehhee
Q 041978 1 LLIQLINLRG 10 (123)
Q Consensus 1 ~~i~~lvl~a 10 (123)
|||+|+|||+
T Consensus 14 LLISfiIlfg 23 (59)
T PF11119_consen 14 LLISFIILFG 23 (59)
T ss_pred HHHHHHHHHH
Confidence 5788888887
No 15
>PF11415 Toxin_37: Antifungal peptide termicin; InterPro: IPR024723 Termicin is a cysteine-rich antifungal peptide, which also exhibits weak antibacterial activity. The global fold of termicin consists of an alpha-helical segment and a two-stranded antiparallel beta-sheet forming a cysteine stabilised alphabeta motif that is also found in antibacterial and antifungal defensins from insects and from plants. The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure compared to the antibacterial defensins [].; PDB: 1MM0_A.
Probab=23.12 E-value=34 Score=20.56 Aligned_cols=29 Identities=24% Similarity=0.722 Sum_probs=21.4
Q ss_pred ccchHHhhhccCCC-CcccccCCCCCCccEEEcC
Q 041978 32 NDCDLHCKTRHAGQ-GQGSCDRTIQPPLCTCFYP 64 (123)
Q Consensus 32 ~dC~~~Ck~~~~~~-~~g~Cd~~~g~nlCtC~Y~ 64 (123)
.+|=+.|+++|+-- ..-.||+ ..|.|.|.
T Consensus 4 ~~CWa~CqaqhgiyFRRAyCdG----s~C~Cvf~ 33 (35)
T PF11415_consen 4 QSCWANCQAQHGIYFRRAYCDG----SRCKCVFN 33 (35)
T ss_dssp HHHHHHHHHHS-TTEEEEEEET----TEEEEEE-
T ss_pred HHHHHHHHHhhcchhhhhhccC----CeeEEEec
Confidence 46888999999743 3688986 58999984
No 16
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=22.93 E-value=28 Score=22.39 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=0.0
Q ss_pred Cceeeehhee
Q 041978 1 LLIQLINLRG 10 (123)
Q Consensus 1 ~~i~~lvl~a 10 (123)
++|++++||+
T Consensus 6 vliVavLllt 15 (75)
T PF02950_consen 6 VLIVAVLLLT 15 (75)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3567777776
Done!