BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041979
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1
SV=1
Length = 211
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 140/254 (55%), Gaps = 48/254 (18%)
Query: 4 RSHVPKFGNWENEDNVPYTMYFDKARKGRT-GGTMINPNDPQENPDLLSDYEAQAPAPPS 62
RS+VPKFGNWE E+NVPYT YFDKARK R G ++NPNDP+ N SD ++QAP P
Sbjct: 3 RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYN----SDSQSQAPPHPP 58
Query: 63 KIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTSSGETYKKPV 122
+ +PE+ + VR + E R++E +L+Q D A SS E K
Sbjct: 59 SSRTKPEQ---VDTVRRSREHMRSREESELKQFGD------------AGGSSNEAANK-- 101
Query: 123 RNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRMRP-NPRVD 181
Q R + S D+ SP ++ NS+ G+SR +P N R D
Sbjct: 102 ----------------RQGRASQNNSYDNKSP------LHKNSYDGTGKSRPKPTNLRAD 139
Query: 182 ESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNS-AGRAGMQSPSTQRNYHRPTN 240
ESP+K VPKFGDWDENNPSSADGYTHIFN+VREER+S A +G T ++ P N
Sbjct: 140 ESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNN 199
Query: 241 NDGVKSCCFPWGKK 254
CCF +G K
Sbjct: 200 TSSC--CCFGFGGK 211
>sp|Q8S3M3|NOIL_ELAOL NOI-like protein OS=Elaeis oleifera PE=2 SV=1
Length = 228
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 1 MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMI-NPNDPQENPDLL 50
MAQ +HVPKFGNW+ E N+ YT YF+ + + G+ I NPNDP+ENP
Sbjct: 1 MAQPAHVPKFGNWDGE-NISYTTYFETVHRDKGDGSKIFNPNDPEENPQAF 50
>sp|P20279|RL3_HALMA 50S ribosomal protein L3P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl3p PE=1
SV=5
Length = 338
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 5 SHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMIN--PNDPQENPDLLSDYEAQAPA--- 59
S P+F +W ++D P F + G T ++N PN P+E E P
Sbjct: 22 SETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPNSPREG------MEETVPVTVI 75
Query: 60 --PPSK---IKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHD 103
PP + ++A + P GQ R E W ++ +L ++ D P HD
Sbjct: 76 ETPPMRAVALRAYEDTPYGQ---RPLTEVWTDEFHSELDRTLDVPEDHD 121
>sp|A8FKL9|MURD_CAMJ8 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Campylobacter
jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC
11828) GN=murD PE=3 SV=1
Length = 402
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 7 VPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAPPSKIKA 66
V KFG ++ D+ +F + +K G ++NPND +N LSD E +P P
Sbjct: 20 VDKFGPFDIYDD-----HFTETKKDTLGNLLLNPNDFDDN---LSDIEIPSPGFP----- 66
Query: 67 EPEKPLGQEA 76
P+ L Q+A
Sbjct: 67 -PKHKLIQKA 75
>sp|Q9PI73|MURD_CAMJE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Campylobacter
jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)
GN=murD PE=3 SV=1
Length = 402
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 7 VPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAPPSKIKA 66
V KFG ++ D+ +F + +K G ++NPND +N LSD E +P P
Sbjct: 20 VDKFGPFDIYDD-----HFTETKKDTLGNLLLNPNDFDDN---LSDIEIPSPGFP----- 66
Query: 67 EPEKPLGQEA 76
P+ L Q+A
Sbjct: 67 -PKHKLIQKA 75
>sp|A1VYE9|MURD_CAMJJ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Campylobacter
jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
GN=murD PE=3 SV=1
Length = 402
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 7 VPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAPPSKIKA 66
V KFG ++ D+ +F + +K G ++NPND +N LSD E +P P
Sbjct: 20 VDKFGPFDIYDD-----HFIETKKDTLGNLLLNPNDFDDN---LSDIEIPSPGFP----- 66
Query: 67 EPEKPLGQEA 76
P+ L Q+A
Sbjct: 67 -PKHKLIQKA 75
>sp|B7JYA9|SYL_CYAP8 Leucine--tRNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=leuS
PE=3 SV=1
Length = 856
Score = 31.2 bits (69), Expect = 6.6, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 26 DKARKG-RTGGTMINPNDPQENPDLLSDY 53
DK ++G TGGT INP + QE P L++DY
Sbjct: 300 DKPKRGILTGGTAINPFNGQEIPILIADY 328
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,907,860
Number of Sequences: 539616
Number of extensions: 4989582
Number of successful extensions: 9132
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 9051
Number of HSP's gapped (non-prelim): 198
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)