Query 041979
Match_columns 254
No_of_seqs 127 out of 149
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nud_C RIN4, RPM1-interacting 99.7 1E-19 3.5E-24 120.4 0.1 35 184-218 1-35 (35)
2 2nud_C RIN4, RPM1-interacting 98.9 6.4E-10 2.2E-14 73.6 1.8 29 4-32 4-35 (35)
3 1ac0_A Glucoamylase; hydrolase 14.7 57 0.0019 24.4 1.2 15 5-19 27-41 (108)
4 2z0b_A GDE5, KIAA1434, putativ 7.7 92 0.0032 24.4 0.2 15 6-20 30-44 (131)
5 2lk0_A RNA-binding protein 5; 7.4 93 0.0032 19.1 0.1 8 8-15 1-8 (32)
6 3rh0_A Arsenate reductase; oxi 7.2 65 0.0022 26.0 -1.0 23 193-217 115-137 (148)
7 2k5k_A Uncharacterized protein 7.0 1.5E+02 0.0052 21.9 1.0 9 9-17 49-57 (70)
8 2wcr_A TNF-alpha inducer prote 6.8 1E+02 0.0035 25.8 0.0 20 25-44 85-104 (159)
9 4dkx_A RAS-related protein RAB 6.8 79 0.0027 26.1 -0.7 15 202-216 158-172 (216)
10 3t38_A Arsenate reductase; low 6.4 1.2E+02 0.0041 26.0 0.3 24 192-215 173-198 (213)
No 1
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=99.74 E-value=1e-19 Score=120.41 Aligned_cols=35 Identities=86% Similarity=1.443 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceehhHHHHHHH
Q 041979 184 PDKGAAVPKFGDWDENNPSSADGYTHIFNQVREER 218 (254)
Q Consensus 184 ~~~~~~vPkFG~WD~~np~s~~~yT~iF~k~r~ek 218 (254)
|+++++|||||+||++||+++++|||||+||||||
T Consensus 1 ~~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K 35 (35)
T 2nud_C 1 PEKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35 (35)
T ss_dssp --------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred CCCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence 46789999999999999999999999999999997
No 2
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=98.85 E-value=6.4e-10 Score=73.57 Aligned_cols=29 Identities=41% Similarity=0.852 Sum_probs=17.5
Q ss_pred CCCCCCCCCccCCC---CccceeeecccccCC
Q 041979 4 RSHVPKFGNWENED---NVPYTMYFDKARKGR 32 (254)
Q Consensus 4 ~~~vPkFG~Wd~~~---~~pyT~~Fe~aR~~k 32 (254)
..+|||||+||.++ ...||++|++||..|
T Consensus 4 ~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K 35 (35)
T 2nud_C 4 VTVVPKFGDWDENNPSSADGYTHIFNKVREER 35 (35)
T ss_dssp -----CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred CCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence 35899999999764 357999999999876
No 3
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=14.65 E-value=57 Score=24.35 Aligned_cols=15 Identities=27% Similarity=0.948 Sum_probs=11.0
Q ss_pred CCCCCCCCccCCCCc
Q 041979 5 SHVPKFGNWENEDNV 19 (254)
Q Consensus 5 ~~vPkFG~Wd~~~~~ 19 (254)
+.+|.||+|+....+
T Consensus 27 Gs~~~LG~W~~~~a~ 41 (108)
T 1ac0_A 27 GSISQLGDWETSDGI 41 (108)
T ss_dssp CSSSTTCSSSGGGSC
T ss_pred eCcHHHCCCCHHHCc
Confidence 468999999874443
No 4
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=7.72 E-value=92 Score=24.42 Aligned_cols=15 Identities=27% Similarity=0.725 Sum_probs=11.1
Q ss_pred CCCCCCCccCCCCcc
Q 041979 6 HVPKFGNWENEDNVP 20 (254)
Q Consensus 6 ~vPkFG~Wd~~~~~p 20 (254)
.+|.||+|+....++
T Consensus 30 s~~~LG~W~p~~av~ 44 (131)
T 2z0b_A 30 SCDALGNWNPQNAVA 44 (131)
T ss_dssp SSGGGTTTCGGGCEE
T ss_pred CCCcCCCCCcccccc
Confidence 579999998754443
No 5
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=7.38 E-value=93 Score=19.09 Aligned_cols=8 Identities=38% Similarity=0.929 Sum_probs=5.3
Q ss_pred CCCCCccC
Q 041979 8 PKFGNWEN 15 (254)
Q Consensus 8 PkFG~Wd~ 15 (254)
||.|+|.-
T Consensus 1 pk~gDW~C 8 (32)
T 2lk0_A 1 XKFEDWLC 8 (32)
T ss_dssp -CCSEEEC
T ss_pred CCCCCCCc
Confidence 67788876
No 6
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=7.18 E-value=65 Score=25.96 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCceehhHHHHHH
Q 041979 193 FGDWDENNPSSADGYTHIFNQVREE 217 (254)
Q Consensus 193 FG~WD~~np~s~~~yT~iF~k~r~e 217 (254)
|+.||..||.... ...|.+++++
T Consensus 115 ~~~w~VpDPy~~~--~~~F~~v~d~ 137 (148)
T 3rh0_A 115 LERWSIEEPDAQG--MERMRIVRDQ 137 (148)
T ss_dssp EEEECCCCCSCCH--HHHHHHHHHH
T ss_pred eecCCcCCCCCCC--HHHHHHHHHH
Confidence 8999999996542 1245555554
No 7
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=6.99 E-value=1.5e+02 Score=21.93 Aligned_cols=9 Identities=44% Similarity=1.420 Sum_probs=7.1
Q ss_pred CCCCccCCC
Q 041979 9 KFGNWENED 17 (254)
Q Consensus 9 kFG~Wd~~~ 17 (254)
.||+||..+
T Consensus 49 RYGDWE~kG 57 (70)
T 2k5k_A 49 RFGDWEKKG 57 (70)
T ss_dssp SCCCCCCCS
T ss_pred ccccchhcc
Confidence 699999743
No 8
>2wcr_A TNF-alpha inducer protein; HP0596, TIP-alpha, immune system; 1.70A {Helicobacter pylori} PDB: 2wcq_A 3guq_A
Probab=6.84 E-value=1e+02 Score=25.85 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=12.9
Q ss_pred ecccccCCCCCCcCCCCCCC
Q 041979 25 FDKARKGRTGGTMINPNDPQ 44 (254)
Q Consensus 25 Fe~aR~~k~~g~~~NPNDP~ 44 (254)
|+.+-+--..|.+||||+.+
T Consensus 85 ~~Sl~k~~qLG~YINPNN~E 104 (159)
T 2wcr_A 85 YDSLMNVDRLGIYINPNNEE 104 (159)
T ss_dssp HHHEEEEEEEEEEECTTTCC
T ss_pred HHHHhhHHHhhceeCCCChh
Confidence 44444444468999999754
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=6.75 E-value=79 Score=26.13 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=10.2
Q ss_pred CCCCCceehhHHHHH
Q 041979 202 SSADGYTHIFNQVRE 216 (254)
Q Consensus 202 ~s~~~yT~iF~k~r~ 216 (254)
..+++-..+|+.|-+
T Consensus 158 ktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 158 KAGYNVKQLFRRVAA 172 (216)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 345677778888754
No 10
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum}
Probab=6.37 E-value=1.2e+02 Score=25.96 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCC--CCCceehhHHHH
Q 041979 192 KFGDWDENNPSS--ADGYTHIFNQVR 215 (254)
Q Consensus 192 kFG~WD~~np~s--~~~yT~iF~k~r 215 (254)
.|+.||..||.. .++|-.+|+.|.
T Consensus 173 ~~~~w~IpDPy~~~~~~F~~v~d~Ie 198 (213)
T 3t38_A 173 HYLDWELADPSDEGEDKIQEIIEEID 198 (213)
T ss_dssp EEEESCC-----CCCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 478999999965 346666666554
Done!