Query 041979
Match_columns 254
No_of_seqs 127 out of 149
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 22:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041979.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041979hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kula_ b.3.1.1 (A:) Glucoamyl 12.3 31 0.0023 24.2 0.9 17 5-21 27-43 (108)
2 d3bmva2 b.3.1.1 (A:579-683) Cy 9.5 30 0.0022 24.3 -0.0 15 6-20 28-42 (105)
3 d1vema1 b.3.1.1 (A:418-516) be 8.9 49 0.0036 22.9 1.0 16 186-201 22-37 (99)
4 d1cyga2 b.3.1.1 (A:575-680) Cy 8.3 36 0.0026 23.8 -0.1 16 6-21 28-43 (106)
5 d1lnga_ d.201.1.1 (A:) SRP19 { 8.2 66 0.0048 22.4 1.4 31 19-50 2-32 (87)
6 d1qhoa2 b.3.1.1 (A:577-686) Cy 7.9 52 0.0038 23.0 0.7 15 6-20 29-43 (110)
7 d1kvva_ d.201.1.1 (A:) SRP19 { 6.1 92 0.0067 22.2 1.3 32 18-50 4-35 (104)
8 d1jida_ d.201.1.1 (A:) SRP19 { 4.8 1.3E+02 0.0096 21.7 1.5 32 18-50 12-43 (114)
9 d2piaa3 d.15.4.2 (A:224-321) P 4.6 1.6E+02 0.012 20.1 1.8 20 12-33 6-25 (98)
10 d1mkca_ g.5.1.2 (A:) Midkine, 4.0 1.5E+02 0.011 18.5 1.0 13 192-204 4-16 (43)
No 1
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}
Probab=12.33 E-value=31 Score=24.16 Aligned_cols=17 Identities=24% Similarity=0.843 Sum_probs=12.5
Q ss_pred CCCCCCCCccCCCCccc
Q 041979 5 SHVPKFGNWENEDNVPY 21 (254)
Q Consensus 5 ~~vPkFG~Wd~~~~~py 21 (254)
+.+|.||+|+.+..++.
T Consensus 27 Gs~~~LG~W~~~~a~~l 43 (108)
T d1kula_ 27 GSISQLGDWETSDGIAL 43 (108)
T ss_dssp CSSGGGTTTCTTTSEEC
T ss_pred eChHHhCCCCHHHCccc
Confidence 46899999988655544
No 2
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=9.48 E-value=30 Score=24.28 Aligned_cols=15 Identities=27% Similarity=0.840 Sum_probs=10.9
Q ss_pred CCCCCCCccCCCCcc
Q 041979 6 HVPKFGNWENEDNVP 20 (254)
Q Consensus 6 ~vPkFG~Wd~~~~~p 20 (254)
.+|.||+|+-...++
T Consensus 28 s~~~LG~W~~~~a~~ 42 (105)
T d3bmva2 28 NVAELGNWDTSKAIG 42 (105)
T ss_dssp SSGGGTTTCGGGCBC
T ss_pred CcHHHCCCCHHHCcc
Confidence 579999998754443
No 3
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}
Probab=8.90 E-value=49 Score=22.92 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 041979 186 KGAAVPKFGDWDENNP 201 (254)
Q Consensus 186 ~~~~vPkFG~WD~~np 201 (254)
--...|.||.||.++.
T Consensus 22 vvGs~~eLG~W~~~ka 37 (99)
T d1vema1 22 ITGNRAELGSWDTKQY 37 (99)
T ss_dssp EEESSGGGTTTCSSSS
T ss_pred EEeCcHHHCCCChhhh
Confidence 3457899999997753
No 4
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.31 E-value=36 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=11.6
Q ss_pred CCCCCCCccCCCCccc
Q 041979 6 HVPKFGNWENEDNVPY 21 (254)
Q Consensus 6 ~vPkFG~Wd~~~~~py 21 (254)
..|.+|+|+.+..++.
T Consensus 28 s~~~LG~W~~~~a~~l 43 (106)
T d1cyga2 28 NVYELGNWDTSKAIGP 43 (106)
T ss_dssp SSGGGBTTCGGGCBCC
T ss_pred CHHHHCCCCHHHCccc
Confidence 5789999987555443
No 5
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.17 E-value=66 Score=22.37 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=21.6
Q ss_pred ccceeeecccccCCCCCCcCCCCCCCCCCccc
Q 041979 19 VPYTMYFDKARKGRTGGTMINPNDPQENPDLL 50 (254)
Q Consensus 19 ~pyT~~Fe~aR~~k~~g~~~NPNDP~enPe~~ 50 (254)
+-|.+|||..+.-+. |+-+.-+---+||.+.
T Consensus 2 vIyP~Y~Ds~~sr~e-GRRv~k~~aV~~P~~~ 32 (87)
T d1lnga_ 2 IIWPSYIDKKKSRRE-GRKVPEELAIEKPSLK 32 (87)
T ss_dssp EECGGGTBTTSCTTT-TCCSCTTTCBSSCCHH
T ss_pred EEcchhhcCCCChhh-cCccCHHHHccCCCHH
Confidence 348999998776665 4666555556788655
No 6
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}
Probab=7.94 E-value=52 Score=22.99 Aligned_cols=15 Identities=27% Similarity=0.911 Sum_probs=11.2
Q ss_pred CCCCCCCccCCCCcc
Q 041979 6 HVPKFGNWENEDNVP 20 (254)
Q Consensus 6 ~vPkFG~Wd~~~~~p 20 (254)
.+|.+|+|+....++
T Consensus 29 ~~~~LG~W~~~~a~~ 43 (110)
T d1qhoa2 29 NIPELGNWSTDTSGA 43 (110)
T ss_dssp SSGGGTTTCCCCSSC
T ss_pred CcHHHCCCChhhccc
Confidence 579999998865443
No 7
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.05 E-value=92 Score=22.21 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=23.6
Q ss_pred CccceeeecccccCCCCCCcCCCCCCCCCCccc
Q 041979 18 NVPYTMYFDKARKGRTGGTMINPNDPQENPDLL 50 (254)
Q Consensus 18 ~~pyT~~Fe~aR~~k~~g~~~NPNDP~enPe~~ 50 (254)
.+-|.+|||.-+.-+. |+-+.-+.-.+||.+.
T Consensus 4 ~vIyP~Y~Ds~~sr~e-GRRv~k~~aV~~P~~~ 35 (104)
T d1kvva_ 4 SVVWTVNLDSKKSRAE-GRRIPRRFAVPNVKLH 35 (104)
T ss_dssp EEEETTTTCTTSCTTT-CCCSCTTTCCSSCCHH
T ss_pred EEEechhhcCCCChhh-cCccCHHHhcCCCCHH
Confidence 4669999998776665 5777666667888665
No 8
>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.79 E-value=1.3e+02 Score=21.70 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=24.2
Q ss_pred CccceeeecccccCCCCCCcCCCCCCCCCCccc
Q 041979 18 NVPYTMYFDKARKGRTGGTMINPNDPQENPDLL 50 (254)
Q Consensus 18 ~~pyT~~Fe~aR~~k~~g~~~NPNDP~enPe~~ 50 (254)
-+-|.+|||+-+.-+. |+-+.-+.--+||.+.
T Consensus 12 ~iIyP~Y~Ds~~tr~e-GRRv~k~~aV~~P~~~ 43 (114)
T d1jida_ 12 ICIYPAYLNNKKTIAE-GRRIPISKAVENPTAT 43 (114)
T ss_dssp EEECGGGGBTTSCTTT-TCCSCTTTCBSSCCHH
T ss_pred EEECCccccCCCChhh-cCccCHHHhccCCCHH
Confidence 3579999998776665 5777777777888766
No 9
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=4.63 E-value=1.6e+02 Score=20.06 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=14.0
Q ss_pred CccCCCCccceeeecccccCCC
Q 041979 12 NWENEDNVPYTMYFDKARKGRT 33 (254)
Q Consensus 12 ~Wd~~~~~pyT~~Fe~aR~~k~ 33 (254)
+++..+|.|||+.|. +.|+.
T Consensus 6 ~~~~~~~~~~~V~l~--~~g~~ 25 (98)
T d2piaa3 6 NTNARENTPFTVRLS--RSGTS 25 (98)
T ss_dssp CCCCSCCCCEEEEET--TTCCE
T ss_pred CCCCCCCCCEEEEEe--CCCEE
Confidence 344557999999995 45554
No 10
>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic}
Probab=4.05 E-value=1.5e+02 Score=18.54 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q 041979 192 KFGDWDENNPSSA 204 (254)
Q Consensus 192 kFG~WD~~np~s~ 204 (254)
||+.|-+=|++.+
T Consensus 4 kF~~WG~CD~~Tg 16 (43)
T d1mkca_ 4 KFENWGACDGGTG 16 (43)
T ss_dssp EECCCCSSCSSSS
T ss_pred cccccccccccCC
Confidence 6999998887655
Done!