BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041980
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1RE29|MOBA_SHESW Molybdenum cofactor guanylyltransferase OS=Shewanella sp. (strain
W3-18-1) GN=mobA PE=3 SV=1
Length = 196
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 68 MMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQ 126
M Q++ LA G + R+ +D+ + L GE +I+ +RI+P KE A+R Q
Sbjct: 1 MSSQIDAVILA---GGMARRMGGDDKGLVELNGEAMIKHTIDRIKPQVKEILINANRNQ 56
>sp|A9KW43|MOBA_SHEB9 Molybdenum cofactor guanylyltransferase OS=Shewanella baltica
(strain OS195) GN=mobA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 68 MMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQ 126
M Q++ LA G + R+ +D+ + L GE +I+ +RI+P KE A+R Q
Sbjct: 1 MSSQIDAVILA---GGMARRMGGDDKGLVELNGEAMIKHTIDRIKPQVKEILINANRNQ 56
>sp|A6WUE5|MOBA_SHEB8 Molybdenum cofactor guanylyltransferase OS=Shewanella baltica
(strain OS185) GN=mobA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 68 MMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQ 126
M Q++ LA G + R+ +D+ + L GE +I+ +RI+P KE A+R Q
Sbjct: 1 MSSQIDAVILA---GGMARRMGGDDKGLVELNGEAMIKHTIDRIKPQVKEILINANRNQ 56
>sp|A3CYQ1|MOBA_SHEB5 Molybdenum cofactor guanylyltransferase OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=mobA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 68 MMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQ 126
M Q++ LA G + R+ +D+ + L GE +I+ +RI+P KE A+R Q
Sbjct: 1 MSSQIDAVILA---GGMARRMGGDDKGLVELNGEAMIKHTIDRIKPQVKEILINANRNQ 56
>sp|B8EDQ5|MOBA_SHEB2 Molybdenum cofactor guanylyltransferase OS=Shewanella baltica
(strain OS223) GN=mobA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 68 MMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQ 126
M Q++ LA G + R+ +D+ + L GE +I+ +RI+P KE A+R Q
Sbjct: 1 MSSQIDAVILA---GGMARRMGGDDKGLVELNGEAMIKHTIDRIKPQVKEILINANRNQ 56
>sp|A4L9P8|K1731_RAT Centrosomal protein KIAA1731 homolog OS=Rattus norvegicus PE=2 SV=2
Length = 2395
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 45 QATNSRNPQLEAELRRTARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLI 104
QA R Q E R ++ + N+ERL E L +LQR++ R AA L+
Sbjct: 227 QAAQERMEQSERAHARGSQAMKKIHLAQNQERLMEELKQLQREDLACKRQTAAQMPSQLL 286
Query: 105 RKPYER 110
PY R
Sbjct: 287 ELPYRR 292
>sp|B0TN10|MOBA_SHEHH Molybdenum cofactor guanylyltransferase OS=Shewanella halifaxensis
(strain HAW-EB4) GN=mobA PE=3 SV=1
Length = 200
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 68 MMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQE 127
M QV+ LA G + R+ ND+ + L +I ERIQP KE A+R Q
Sbjct: 1 MTAQVDAVILA---GGMARRMGGNDKGLVELENRPMIEHAIERIQPQVKEILINANRNQN 57
Query: 128 K 128
+
Sbjct: 58 R 58
>sp|A5DEZ6|FMP52_PICGU Protein FMP52, mitochondrial OS=Meyerozyma guilliermondii (strain
ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279
/ NRRL Y-324) GN=FMP52 PE=3 SV=2
Length = 232
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 2 SVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYC 42
SV+ + S+ W I+RK +D+ F AF T + G G+
Sbjct: 46 SVIEKDSDVWGDIIRKQKDNDVFISAFGTTKKLAGGNEGFL 86
>sp|Q9AJQ8|METH_VIBFI Methionine synthase OS=Vibrio fischeri GN=metH PE=3 SV=1
Length = 1226
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 38 VVGYCVMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAE----YLGELQRKEDTNDR 93
+ G+ V R +L E + + +M Q +RLAE YL E RKE
Sbjct: 1061 IGGFAVTGGIGER--ELADEYKANGDDYNAIMIQAVADRLAEAFAEYLHEKVRKEIWGYS 1118
Query: 94 YVAALRGETLIRKPYERIQPIP 115
L + LIR+ Y+ I+P P
Sbjct: 1119 PNETLSNDDLIREKYQGIRPAP 1140
>sp|Q5E814|METH_VIBF1 Methionine synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=metH PE=3 SV=1
Length = 1226
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 38 VVGYCVMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAE----YLGELQRKEDTNDR 93
+ G+ V R +L E + + +M Q +RLAE YL E RKE
Sbjct: 1061 IGGFAVTGGIGER--ELADEYKANGDDYNAIMIQAVADRLAEAFAEYLHEKVRKEIWGYS 1118
Query: 94 YVAALRGETLIRKPYERIQPIP 115
L + LIR+ Y+ I+P P
Sbjct: 1119 PNETLSNDDLIREKYQGIRPAP 1140
>sp|Q7MHB1|METH_VIBVY Methionine synthase OS=Vibrio vulnificus (strain YJ016) GN=metH PE=3
SV=1
Length = 1226
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 38 VVGYCVMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAE----YLGELQRKEDTNDR 93
+ + V N R +L + + + +M Q +RLAE YL E RKE
Sbjct: 1060 IGAFAVTGGVNER--ELADQFKAQGDDYNAIMIQAVADRLAEAFAEYLHERVRKEIWGYA 1117
Query: 94 YVAALRGETLIRKPYERIQPIP 115
L E LIR+ Y+ I+P P
Sbjct: 1118 ADENLSNEELIREKYQGIRPAP 1139
>sp|Q8DCJ7|METH_VIBVU Methionine synthase OS=Vibrio vulnificus (strain CMCP6) GN=metH PE=3
SV=1
Length = 1226
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 38 VVGYCVMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAE----YLGELQRKEDTNDR 93
+ + V N R +L + + + +M Q +RLAE YL E RKE
Sbjct: 1060 IGAFAVTGGVNER--ELADQFKAQGDDYNAIMIQAVADRLAEAFAEYLHERVRKEIWGYA 1117
Query: 94 YVAALRGETLIRKPYERIQPIP 115
L E LIR+ Y+ I+P P
Sbjct: 1118 ADENLSNEELIREKYQGIRPAP 1139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,418,580
Number of Sequences: 539616
Number of extensions: 1708408
Number of successful extensions: 4424
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4417
Number of HSP's gapped (non-prelim): 16
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)