BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041981
MARKTLGLLSLMTGLASLIIMHAYGESVPVTTPFSSGRADHFHEKVRQMQEFKASFSRRD
LAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLM
EGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASK
SSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIR
NSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCY
NKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSIN
GVAKGVNIVDNLFSGKNNG

High Scoring Gene Products

Symbol, full name Information P value
QRT3
QUARTET 3
protein from Arabidopsis thaliana 3.5e-123
AT4G20040 protein from Arabidopsis thaliana 5.0e-60

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041981
        (379 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119832 - symbol:QRT3 "QUARTET 3" species:3702...  1211  3.5e-123  1
TAIR|locus:2119817 - symbol:AT4G20040 "AT4G20040" species...   615  5.0e-60   1


>TAIR|locus:2119832 [details] [associations]
            symbol:QRT3 "QUARTET 3" species:3702 "Arabidopsis
            thaliana" [GO:0005576 "extracellular region" evidence=ISM]
            [GO:0010584 "pollen exine formation" evidence=RCA;IMP] [GO:0004650
            "polygalacturonase activity" evidence=IDA] [GO:0009556
            "microsporogenesis" evidence=IMP] [GO:0009827 "plant-type cell wall
            modification" evidence=RCA] [GO:0009860 "pollen tube growth"
            evidence=RCA] GO:GO:0005618 GO:GO:0005576 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0010584 EMBL:AL021637 EMBL:AL161552
            GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
            InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
            GO:GO:0009556 EMBL:AY268942 EMBL:AY268941 IPI:IPI00548352
            PIR:T04889 RefSeq:NP_001078410.1 RefSeq:NP_193738.1
            UniGene:At.32754 ProteinModelPortal:O49432 SMR:O49432 PaxDb:O49432
            PRIDE:O49432 EnsemblPlants:AT4G20050.1 EnsemblPlants:AT4G20050.2
            GeneID:827750 KEGG:ath:AT4G20050 TAIR:At4g20050 eggNOG:NOG299408
            HOGENOM:HOG000030805 InParanoid:O49432 OMA:NATMTGG PhylomeDB:O49432
            ProtClustDB:CLSN2685725 Genevestigator:O49432 Uniprot:O49432
        Length = 481

 Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
 Identities = 238/339 (70%), Positives = 273/339 (80%)

Query:    43 HEK-VRQMQEFKASFSRRDLXXXXXXXXXXXXXXQVTSGPRVYGVISYGADPTGKSDSTE 101
             H++ + +MQ  KAS  RR+L              Q   GPRVY VISYGADPTGK DST+
Sbjct:    37 HDRALAEMQALKASLVRRNLPALVSPPPTPP---QAVPGPRVYQVISYGADPTGKLDSTD 93

Query:   102 AILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTL 161
             AILKA+ +AF+GP  G LM+GI++LGGA I L+GG+YLIS+PLR P AG GNL+I GGTL
Sbjct:    94 AILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTL 153

Query:   162 RASDDFPTDGYLIDLXXXXXXXXYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYI 221
             RAS+DFP D YLI+L        Y +EYITL DL+ D NYRGGAI+VINSLRTSIDNCYI
Sbjct:   154 RASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYI 213

Query:   222 ARF-TSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFS 280
              RF  +NGILV+SGHETYIRNSFLGQHITAGGD GER+F+GTAINLMGNDNAVTD VIFS
Sbjct:   214 TRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFS 273

Query:   281 AAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQ 340
             A +G+MVSGQAN  SGVHCYNKATGFGGTGIYL+LPG TQ RIVNSY+DYTGIVAEDPVQ
Sbjct:   274 ARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQ 333

Query:   341 LHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG 379
             L IS +FFLGDAFI+LKSI G  +GV+IVDN+FSG  +G
Sbjct:   334 LQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFSGSGHG 372


>TAIR|locus:2119817 [details] [associations]
            symbol:AT4G20040 "AT4G20040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002687 Gene3D:2.160.20.10
            InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
            SMART:SM00710 SUPFAM:SSF51126 GO:GO:0016829 HOGENOM:HOG000030805
            ProtClustDB:CLSN2685725 UniGene:At.26265 UniGene:At.71246
            EMBL:AF428273 EMBL:AY133626 IPI:IPI00544910 RefSeq:NP_567595.1
            ProteinModelPortal:Q944M6 PRIDE:Q944M6 EnsemblPlants:AT4G20040.1
            GeneID:827749 KEGG:ath:AT4G20040 TAIR:At4g20040 InParanoid:Q944M6
            OMA:RIRITNC PhylomeDB:Q944M6 Genevestigator:Q944M6 Uniprot:Q944M6
        Length = 483

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 119/194 (61%), Positives = 146/194 (75%)

Query:   187 YEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQ 246
             YE +T +D++FDS +RGG I VI+S R  I NCY   FT+ GI VQ GHETYI NSFLGQ
Sbjct:   190 YEDVTFQDVLFDSRFRGGGILVIDSARIRITNCYFLHFTTQGIKVQGGHETYISNSFLGQ 249

Query:   247 HITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGF 306
             H T GGD  ER FTGT I++  NDNA+TDVVIFSA +GI ++G AN  +GVHCYNKAT F
Sbjct:   250 HSTVGGDREERGFTGTGIDISSNDNAITDVVIFSAGIGISLNGGANMVTGVHCYNKATWF 309

Query:   307 GGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGV 366
             GG GI +K   +  TRI N Y+DYTGIV EDPV +H++++ FLGDA IVL+S++G   GV
Sbjct:   310 GGIGILVK---SHLTRIDNCYLDYTGIVIEDPVHVHVTNALFLGDANIVLRSVHGKISGV 366

Query:   367 NIVDNLFSG--KNN 378
             NIV+N+FSG  KNN
Sbjct:   367 NIVNNMFSGTAKNN 380

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 116/317 (36%), Positives = 168/317 (52%)

Query:    80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYL 139
             G  +Y  I YGADPTG  DS++AIL+AL+DAF       ++  +++LGG  I L+GG+Y+
Sbjct:    66 GKVIYP-IGYGADPTGGQDSSDAILEALTDAFQLQTGLEMLPRVADLGGLVIDLQGGSYM 124

Query:   140 ISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLXXXXXXXXYNYEYITLEDLMFDS 199
             I KPLR P +G GNL++ GGT RAS+ FP D +L++L             ++ E+   D 
Sbjct:   125 IGKPLRFPSSGGGNLVVKGGTFRASELFPGDRHLVELVASNAKKPMK---MSPEESFSDQ 181

Query:   200 NYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNF 259
               +   I   +   T  D  + +RF   GILV       I N +     T G      + 
Sbjct:   182 KDQSSGIFYEDV--TFQDVLFDSRFRGGGILVIDSARIRITNCYFLHFTTQGIKVQGGHE 239

Query:   260 TGTAINLMGNDNAV---TDVVIFSAAVGIMVSGQANTFSGVHCYNKATGF---GG----T 309
             T  + + +G  + V    +   F+   GI +S   N  + V  ++   G    GG    T
Sbjct:   240 TYISNSFLGQHSTVGGDREERGFTGT-GIDISSNDNAITDVVIFSAGIGISLNGGANMVT 298

Query:   310 GI--YLK---------LPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKS 358
             G+  Y K         L  +  TRI N Y+DYTGIV EDPV +H++++ FLGDA IVL+S
Sbjct:   299 GVHCYNKATWFGGIGILVKSHLTRIDNCYLDYTGIVIEDPVHVHVTNALFLGDANIVLRS 358

Query:   359 INGVAKGVNIVDNLFSG 375
             ++G   GVNIV+N+FSG
Sbjct:   359 VHGKISGVNIVNNMFSG 375


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      379       357   0.00080  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  201 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.01u 0.10s 26.11t   Elapsed:  00:00:01
  Total cpu time:  26.01u 0.10s 26.11t   Elapsed:  00:00:01
  Start:  Sat May 11 14:55:19 2013   End:  Sat May 11 14:55:20 2013

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