BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041981
(379 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
Length = 481
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 277/345 (80%), Gaps = 4/345 (1%)
Query: 36 SGRADHFHEKVRQMQEFKASFSRRDLAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTG 95
SG + +MQ KAS RR+L A + P PQ GPRVY VISYGADPTG
Sbjct: 31 SGSMSPHDRALAEMQALKASLVRRNLPALVS---PPPTPPQAVPGPRVYQVISYGADPTG 87
Query: 96 KSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM 155
K DST+AILKA+ +AF+GP G LM+GI++LGGA I L+GG+YLIS+PLR P AG GNL+
Sbjct: 88 KLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLL 147
Query: 156 IHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTS 215
I GGTLRAS+DFP D YLI+L S Y +EYITL DL+ D NYRGGAI+VINSLRTS
Sbjct: 148 ISGGTLRASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTS 207
Query: 216 IDNCYIARF-TSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVT 274
IDNCYI RF +NGILV+SGHETYIRNSFLGQHITAGGD GER+F+GTAINLMGNDNAVT
Sbjct: 208 IDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVT 267
Query: 275 DVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIV 334
D VIFSA +G+MVSGQAN SGVHCYNKATGFGGTGIYL+LPG TQ RIVNSY+DYTGIV
Sbjct: 268 DTVIFSARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIV 327
Query: 335 AEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG 379
AEDPVQL IS +FFLGDAFI+LKSI G +GV+IVDN+FSG +G
Sbjct: 328 AEDPVQLQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFSGSGHG 372
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2
SV=1
Length = 361
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 261 GTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQ 320
G ++ L +AV D + AA + + N +S VHC K TG G TGIYL +
Sbjct: 224 GASLYLTTQLHAVGDGLRVIAAHNRQSTTEQNGYSFVHC--KVTGVG-TGIYLGRAWMSH 280
Query: 321 TRIVNSYMDYTGIV-----AEDPVQLHISSSFF 348
++V SY + + +V E+ V+ H + F+
Sbjct: 281 PKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFY 313
>sp|Q826C5|GLAA_STRAW Alpha-1,3-galactosidase A OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=glaA PE=3 SV=1
Length = 625
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 61 LAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDA 110
L A +P A +P+VT P V V YGADPTG++DST A+ AL A
Sbjct: 23 LGGATSPAAA---APRVT--PVVVDVDDYGADPTGRTDSTPAVAAALRHA 67
>sp|P42027|NDUS7_BRAOL NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial OS=Brassica oleracea PE=2 SV=1
Length = 215
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 18/138 (13%)
Query: 67 PGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLME---GI 123
P +PA +P + P G S A P G S + E ++ + D N R GS+ G+
Sbjct: 32 PALSPATTPTSYTRP---GPPSTSAPPPGLSKTAEFVISKVDDLMNWARRGSIWPMTFGL 88
Query: 124 SNLGGAEIHLEGGNYLISK--PLRLPDAGVGNLMIHGGTL---------RASDDFPTDGY 172
+ +H Y + + + P + MI GTL + D P +
Sbjct: 89 ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 148
Query: 173 LIDL-SASKSSSSYNYEY 189
+I + S + Y+Y Y
Sbjct: 149 VISMGSCANGGGYYHYSY 166
>sp|P49426|EXG1_COCCA Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum GN=EXG1 PE=1
SV=1
Length = 788
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 86 VISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPL 144
V YGA G +D ++A +A+SD G R G + S A +++ G YLI+KP+
Sbjct: 73 VKDYGAKGDGVTDDSDAFNRAISD---GSRCGPWVCDSSTDSPAVVYVPSGTYLINKPI 128
>sp|P64326|MFD_MYCTU Transcription-repair-coupling factor OS=Mycobacterium tuberculosis
GN=mfd PE=1 SV=1
Length = 1234
Score = 33.5 bits (75), Expect = 2.4, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 23/168 (13%)
Query: 62 AAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGP-REGSLM 120
A AT GYA +P + RV +S P G D +A + GP R+G ++
Sbjct: 420 AHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVII 479
Query: 121 EGI-------SNLGGAEIHLEGGNYLISKPLRLPDA---GVGNLMIHGGTLRASDDFPTD 170
G ++L G+ + G L +K + D G+L++H D
Sbjct: 480 PGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVH--------DQHGI 531
Query: 171 GYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDN 218
G +++ ++ EY+ LE + S RGG + L +D+
Sbjct: 532 GRFVEM-VERTVGGARREYLVLE---YASAKRGGGAKNTDKLYVPMDS 575
>sp|P64327|MFD_MYCBO Transcription-repair-coupling factor OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=mfd PE=3 SV=1
Length = 1234
Score = 33.5 bits (75), Expect = 2.4, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 23/168 (13%)
Query: 62 AAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGP-REGSLM 120
A AT GYA +P + RV +S P G D +A + GP R+G ++
Sbjct: 420 AHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVII 479
Query: 121 EGI-------SNLGGAEIHLEGGNYLISKPLRLPDA---GVGNLMIHGGTLRASDDFPTD 170
G ++L G+ + G L +K + D G+L++H D
Sbjct: 480 PGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVH--------DQHGI 531
Query: 171 GYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDN 218
G +++ ++ EY+ LE + S RGG + L +D+
Sbjct: 532 GRFVEM-VERTVGGARREYLVLE---YASAKRGGGAKNTDKLYVPMDS 575
>sp|Q96YQ2|DTDA_SULTO D-tyrosyl-tRNA(Tyr) deacylase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=dtdA PE=3 SV=1
Length = 237
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 20/85 (23%)
Query: 292 NTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGD 351
+ + + C NK GFGGT Y Y ++AE HI S ++L +
Sbjct: 147 DKYKDIECENKIVGFGGT----------------HYTPYFSLLAEKSCVGHIISKYYLAE 190
Query: 352 A--FIVLKSINGVAKGVNIV--DNL 372
++L+++N + ++ V DN+
Sbjct: 191 LSNEVILQTVNNTIEKIDTVMFDNV 215
>sp|B9JX63|TRPD_AGRVS Anthranilate phosphoribosyltransferase OS=Agrobacterium vitis
(strain S4 / ATCC BAA-846) GN=trpD PE=3 SV=1
Length = 340
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 251 GGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFS 295
GGD GE N L G NA DV + +AA ++++G+ANT +
Sbjct: 265 GGD-GEYNAKALRAVLEGEKNAYRDVALCNAAAALVIAGKANTLA 308
>sp|O31980|YOME_BACSU SPBc2 prophage-derived uncharacterized protein YomE OS=Bacillus
subtilis (strain 168) GN=yomE PE=4 SV=1
Length = 644
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 77 VTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGG 136
+ S P + V+ G P G D+T KALSD +S GG ++H G
Sbjct: 336 IESKP-TWNVLDLGFSPDGLIDNTAKFKKALSD-------------LSEKGGGKLHFPKG 381
Query: 137 NYLISK 142
YLI K
Sbjct: 382 TYLIGK 387
>sp|D4GYG7|AGLE_HALVD Glycosyltransferase AglE OS=Haloferax volcanii (strain ATCC 29605 /
DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=aglE PE=1 SV=1
Length = 304
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 88 SYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKP 143
SY A TG S+ AIL A D P + L G+S + G + L GGN + P
Sbjct: 76 SYAARNTGIEQSSGAIL-AFLDGDCSPHQQWLERGVSTISGTGVDLVGGNVEFTYP 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,460,791
Number of Sequences: 539616
Number of extensions: 6594655
Number of successful extensions: 16516
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 16505
Number of HSP's gapped (non-prelim): 30
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)