Query 041981
Match_columns 379
No_of_seqs 260 out of 727
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 12:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03808 RR_plus_rpt_1 twin-a 100.0 7.7E-30 1.7E-34 258.6 20.5 258 80-377 34-308 (455)
2 PLN02793 Probable polygalactur 99.9 1.6E-25 3.6E-30 229.8 27.8 208 80-314 49-308 (443)
3 PLN02218 polygalacturonase ADP 99.9 7.9E-25 1.7E-29 224.0 27.5 196 80-302 64-311 (431)
4 PLN02155 polygalacturonase 99.9 1.6E-24 3.6E-29 219.5 25.9 155 80-247 24-216 (394)
5 PLN03003 Probable polygalactur 99.9 3.5E-24 7.7E-29 219.8 25.5 194 80-303 20-258 (456)
6 PLN03010 polygalacturonase 99.9 3.4E-23 7.3E-28 210.7 26.4 152 80-247 43-228 (409)
7 PLN02188 polygalacturonase/gly 99.9 3.4E-23 7.4E-28 210.5 25.4 152 80-247 33-226 (404)
8 PF12708 Pectate_lyase_3: Pect 99.9 2.6E-21 5.7E-26 176.7 18.7 203 83-327 1-221 (225)
9 COG5434 PGU1 Endopygalactoruna 99.5 4.2E-13 9.1E-18 140.6 17.3 203 78-301 77-368 (542)
10 TIGR03805 beta_helix_1 paralle 99.1 1.2E-08 2.6E-13 101.2 22.6 228 103-377 1-284 (314)
11 PF00295 Glyco_hydro_28: Glyco 99.1 3.7E-09 8E-14 105.1 16.7 173 127-315 5-224 (326)
12 PF13229 Beta_helix: Right han 98.5 1.6E-06 3.5E-11 74.2 10.7 150 205-373 2-158 (158)
13 PF05048 NosD: Periplasmic cop 98.2 3.1E-05 6.7E-10 72.8 14.4 81 206-300 38-120 (236)
14 PF13229 Beta_helix: Right han 98.1 2.2E-05 4.7E-10 67.2 9.7 130 227-375 1-136 (158)
15 TIGR03805 beta_helix_1 paralle 97.8 0.0011 2.4E-08 65.9 17.9 151 188-353 86-285 (314)
16 PF01696 Adeno_E1B_55K: Adenov 97.8 0.005 1.1E-07 63.0 21.5 174 85-303 45-221 (386)
17 PF05048 NosD: Periplasmic cop 97.8 0.00052 1.1E-08 64.5 13.2 147 204-373 14-165 (236)
18 PLN02188 polygalacturonase/gly 97.3 0.0038 8.2E-08 64.4 12.9 118 205-336 157-286 (404)
19 PF12218 End_N_terminal: N ter 97.0 0.00078 1.7E-08 51.9 3.9 38 91-144 1-38 (67)
20 PLN02793 Probable polygalactur 96.9 0.013 2.8E-07 61.3 13.2 123 205-336 179-308 (443)
21 PLN02218 polygalacturonase ADP 96.9 0.01 2.2E-07 61.8 12.4 118 205-336 194-323 (431)
22 PLN03003 Probable polygalactur 96.7 0.018 3.9E-07 60.4 12.4 121 202-336 137-269 (456)
23 PF07602 DUF1565: Protein of u 96.7 0.046 1E-06 53.0 14.0 114 101-233 16-143 (246)
24 PLN02665 pectinesterase family 96.6 0.46 9.9E-06 48.7 21.4 199 93-329 74-296 (366)
25 PLN02155 polygalacturonase 96.4 0.051 1.1E-06 56.0 13.0 118 205-336 147-276 (394)
26 PLN03010 polygalacturonase 96.3 0.07 1.5E-06 55.3 13.6 132 191-336 137-288 (409)
27 PF00295 Glyco_hydro_28: Glyco 96.3 0.067 1.5E-06 53.4 12.7 119 204-336 93-223 (326)
28 PLN02682 pectinesterase family 96.1 1.3 2.9E-05 45.4 21.3 197 99-329 81-303 (369)
29 TIGR03808 RR_plus_rpt_1 twin-a 95.7 0.23 5.1E-06 52.0 14.0 160 195-374 100-281 (455)
30 PLN02773 pectinesterase 95.6 2.2 4.8E-05 43.0 20.0 204 93-329 11-238 (317)
31 PLN02432 putative pectinestera 95.3 2 4.3E-05 42.8 18.3 192 93-329 17-228 (293)
32 PF01095 Pectinesterase: Pecti 95.2 1.5 3.2E-05 43.7 17.2 129 99-248 11-149 (298)
33 PLN02480 Probable pectinestera 95.2 3.1 6.8E-05 42.3 19.7 41 93-147 54-94 (343)
34 PLN02170 probable pectinestera 94.9 1.5 3.3E-05 46.9 17.4 199 93-329 231-450 (529)
35 PLN02468 putative pectinestera 94.7 2.1 4.5E-05 46.4 18.0 197 94-329 265-488 (565)
36 PLN02506 putative pectinestera 94.7 2.4 5.2E-05 45.6 18.2 197 93-329 238-457 (537)
37 PLN02201 probable pectinestera 94.6 1.6 3.5E-05 46.7 16.6 198 93-329 212-440 (520)
38 PLN02916 pectinesterase family 94.5 3.6 7.9E-05 43.9 18.8 201 93-329 193-424 (502)
39 PLN02176 putative pectinestera 94.3 6.4 0.00014 40.1 19.4 192 92-329 44-269 (340)
40 PLN02708 Probable pectinestera 94.3 4.8 0.0001 43.5 19.4 199 94-329 248-485 (553)
41 PF14592 Chondroitinas_B: Chon 94.2 3.7 8E-05 43.0 17.9 34 99-148 3-36 (425)
42 PLN02314 pectinesterase 94.1 3.9 8.5E-05 44.5 18.6 193 99-329 289-507 (586)
43 PLN02713 Probable pectinestera 94.1 5.1 0.00011 43.5 19.3 55 93-159 256-311 (566)
44 PLN02217 probable pectinestera 93.7 4.1 8.9E-05 45.0 17.8 197 94-329 257-484 (670)
45 PLN02933 Probable pectinestera 93.6 7 0.00015 42.1 18.9 199 93-329 224-452 (530)
46 PLN02301 pectinesterase/pectin 93.5 5.2 0.00011 43.2 18.0 198 93-329 242-470 (548)
47 PLN02990 Probable pectinestera 93.5 5.3 0.00012 43.4 18.0 200 93-329 265-494 (572)
48 PLN02416 probable pectinestera 93.3 2.7 5.9E-05 45.3 15.4 198 94-329 237-464 (541)
49 PF03718 Glyco_hydro_49: Glyco 93.2 6.4 0.00014 42.4 17.7 74 214-302 358-436 (582)
50 PLN02488 probable pectinestera 93.1 4.5 9.8E-05 43.2 16.5 198 94-329 204-431 (509)
51 PLN02484 probable pectinestera 92.8 5.1 0.00011 43.6 16.7 198 94-329 279-507 (587)
52 PLN02745 Putative pectinestera 92.7 8 0.00017 42.2 18.1 193 99-329 296-519 (596)
53 PLN02497 probable pectinestera 92.0 13 0.00028 37.8 17.4 193 94-329 39-262 (331)
54 PLN03043 Probable pectinestera 91.7 8 0.00017 41.7 16.4 201 94-329 230-460 (538)
55 PLN02671 pectinesterase 91.7 18 0.00038 37.2 19.2 202 93-329 65-293 (359)
56 PLN02995 Probable pectinestera 91.5 8.2 0.00018 41.7 16.3 201 93-329 229-459 (539)
57 PLN02197 pectinesterase 91.3 17 0.00036 39.8 18.4 200 93-329 281-512 (588)
58 PF12708 Pectate_lyase_3: Pect 91.2 5.7 0.00012 35.9 13.0 117 214-350 94-219 (225)
59 PRK10123 wcaM putative colanic 91.1 5.4 0.00012 40.1 13.3 57 80-145 31-89 (464)
60 COG3420 NosD Nitrous oxidase a 91.1 3.1 6.6E-05 42.5 11.7 19 226-244 120-138 (408)
61 smart00656 Amb_all Amb_all dom 90.8 4.6 9.9E-05 37.4 12.1 60 226-289 60-122 (190)
62 PF00544 Pec_lyase_C: Pectate 89.1 10 0.00022 35.4 12.9 21 226-246 75-95 (200)
63 COG3420 NosD Nitrous oxidase a 89.1 16 0.00035 37.4 14.9 146 202-355 149-311 (408)
64 COG3866 PelB Pectate lyase [Ca 88.3 12 0.00027 37.7 13.4 85 201-290 114-207 (345)
65 PLN02313 Pectinesterase/pectin 87.1 31 0.00067 37.7 16.8 51 94-159 282-333 (587)
66 COG5434 PGU1 Endopygalactoruna 86.6 5 0.00011 43.3 10.3 75 207-290 242-317 (542)
67 PF01696 Adeno_E1B_55K: Adenov 86.1 10 0.00022 39.2 11.9 81 213-306 122-204 (386)
68 PF12541 DUF3737: Protein of u 85.4 26 0.00057 34.6 13.7 37 208-246 54-90 (277)
69 PLN02304 probable pectinestera 85.0 52 0.0011 34.1 21.2 52 92-158 80-132 (379)
70 PLN02634 probable pectinestera 82.7 62 0.0013 33.3 20.8 51 93-158 62-113 (359)
71 smart00656 Amb_all Amb_all dom 81.2 33 0.00072 31.7 12.2 108 260-375 59-188 (190)
72 TIGR03804 para_beta_helix para 75.3 4.6 9.9E-05 28.1 3.6 39 205-244 1-39 (44)
73 TIGR03804 para_beta_helix para 70.4 6.9 0.00015 27.2 3.6 31 318-351 12-42 (44)
74 PRK10123 wcaM putative colanic 59.0 80 0.0017 32.0 9.7 52 214-269 179-233 (464)
75 PF00544 Pec_lyase_C: Pectate 56.9 49 0.0011 30.8 7.6 84 290-375 46-157 (200)
76 PF07602 DUF1565: Protein of u 50.7 1.2E+02 0.0025 29.7 9.3 83 262-351 89-188 (246)
77 PF09251 PhageP22-tail: Salmon 50.5 1.4E+02 0.003 31.8 10.1 46 260-305 324-370 (549)
78 smart00722 CASH Domain present 46.6 1.6E+02 0.0036 24.1 10.1 41 330-370 93-137 (146)
79 PRK10531 acyl-CoA thioesterase 45.1 4E+02 0.0087 28.2 22.7 51 92-156 87-137 (422)
80 COG3866 PelB Pectate lyase [Ca 43.7 1.3E+02 0.0028 30.6 8.5 87 289-376 124-229 (345)
81 PF14592 Chondroitinas_B: Chon 43.0 96 0.0021 32.7 7.8 90 263-352 238-364 (425)
82 PLN02480 Probable pectinestera 40.8 4.2E+02 0.009 27.2 12.1 120 190-329 134-275 (343)
83 PRK13658 hypothetical protein; 37.3 47 0.001 25.3 3.3 24 41-64 24-47 (59)
84 PRK02919 oxaloacetate decarbox 36.5 1.2E+02 0.0027 24.6 6.0 9 101-109 68-76 (82)
85 PF09251 PhageP22-tail: Salmon 33.8 1.2E+02 0.0027 32.1 6.8 77 272-358 314-395 (549)
86 PF12541 DUF3737: Protein of u 29.0 5.9E+02 0.013 25.4 12.7 40 292-336 191-230 (277)
87 PRK09718 hypothetical protein; 26.3 1.4E+02 0.003 32.2 5.7 55 292-350 145-199 (512)
88 PF04277 OAD_gamma: Oxaloaceta 25.0 3.1E+02 0.0066 21.3 6.4 9 101-109 67-75 (79)
89 PF08480 Disaggr_assoc: Disagg 23.2 2.7E+02 0.0058 26.4 6.5 20 332-351 57-76 (198)
90 PF08218 Citrate_ly_lig: Citra 21.0 55 0.0012 30.6 1.5 20 128-148 58-77 (182)
91 smart00710 PbH1 Parallel beta- 20.7 1.2E+02 0.0025 17.3 2.5 20 213-232 3-22 (26)
No 1
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.97 E-value=7.7e-30 Score=258.64 Aligned_cols=258 Identities=23% Similarity=0.297 Sum_probs=204.4
Q ss_pred CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEEEc-
Q 041981 80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHG- 158 (379)
Q Consensus 80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~igd- 158 (379)
+.+.|||++|||+|||++|+|+|||+||++|.+ ++.+|.||+|+|+. +||+++. ...+.+.
T Consensus 34 p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa~--------------gG~tV~Lp~G~Y~~-G~L~L~s---pltL~G~~ 95 (455)
T TIGR03808 34 STLGRDATQYGVRPNSPDDQTRALQRAIDEAAR--------------AQTPLALPPGVYRT-GPLRLPS---GAQLIGVR 95 (455)
T ss_pred CccCCCHHHcCcCCCCcchHHHHHHHHHHHhhc--------------CCCEEEECCCceec-ccEEECC---CcEEEecC
Confidence 566699999999999999999999999998742 25689999999987 5999995 3333333
Q ss_pred cEEEecCCCCCCeEEEEecCCCCCCCCCccccceeEEEEeccc-----ccCCceEEcccceEEeeEEEEeecCCceeEee
Q 041981 159 GTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNY-----RGGAISVINSLRTSIDNCYIARFTSNGILVQS 233 (379)
Q Consensus 159 GtI~A~~~f~gd~~lI~g~~~~~~~~~~~~~i~lrnl~~D~n~-----~~~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~ 233 (379)
+..+. .+.+...+|. ......+++++|+||+.. +..+|.+..+.++.|+||++.+.-.-||+++.
T Consensus 96 gAt~~--vIdG~~~lIi--------ai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~ 165 (455)
T TIGR03808 96 GATRL--VFTGGPSLLS--------SEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLET 165 (455)
T ss_pred CcEEE--EEcCCceEEE--------EecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEc
Confidence 33210 1112222332 123467889999999643 56789998999999999999996458999998
Q ss_pred eeeEEEecceeeeecccCCCCCccccceeeEEecCCccEEEEEE-----E---EecceeEEEcccceeeeeeEEecCcee
Q 041981 234 GHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVV-----I---FSAAVGIMVSGQANTFSGVHCYNKATG 305 (379)
Q Consensus 234 s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~~vsD~~-----i---~~g~~G~~v~gqqn~i~~i~~~n~~Tg 305 (379)
+. ..|++..|.... +.+++.+...++.+++| .|.++. | .-+.+|.++.+ |++++|+...++|+
T Consensus 166 ~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N--~I~g~RD~gi~i~r~~~~~dg~~v~~--n~i~~i~a~~gg~~ 236 (455)
T TIGR03808 166 VS-GDISGNTITQIA----VTAIVSFDALGLIVARN--TIIGANDNGIEILRSAIGDDGTIVTD--NRIEDIKAGPGGSG 236 (455)
T ss_pred Cc-ceEecceEeccc----cceEEEeccCCCEEECC--EEEccCCCCeEEEEeeecCCcceeec--cccccccccCCCcC
Confidence 76 888888777763 56699999999999999 777763 2 34789999998 99999999999999
Q ss_pred eeeeeeEEeccc---ccceeEecceeccceEEEcCCccEEEEceeeeecceeEeeeccceeeeeEEEeeeccCCC
Q 041981 306 FGGTGIYLKLPG---NTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKN 377 (379)
Q Consensus 306 ~~G~GI~~~~~g---~~~~~I~nCyldy~~i~~~~~~~i~I~~~~~~g~~~v~l~~~~~~~~~~~i~~n~f~~~~ 377 (379)
+.||||++|+++ +++|+|++| +|+||+.|+++++||.+|.|++.+||+|-..-+ -.|-.|.+|.|.|..
T Consensus 237 ~~GNGI~~~~a~~v~V~gN~I~~~--r~dgI~~nsss~~~i~~N~~~~~R~~alhymfs-~~g~~i~~N~~~g~~ 308 (455)
T TIGR03808 237 QYGNAINAFRAGNVIVRGNRIRNC--DYSAVRGNSASNIQITGNSVSDVREVALYSEFA-FEGAVIANNTVDGAA 308 (455)
T ss_pred CccccEEEEccCCeEEECCEEecc--ccceEEEEcccCcEEECcEeeeeeeeEEEEEEe-CCCcEEeccEEecCc
Confidence 999999999998 899999999 999999999999999999999999999876622 122345566665543
No 2
>PLN02793 Probable polygalacturonase
Probab=99.95 E-value=1.6e-25 Score=229.79 Aligned_cols=208 Identities=18% Similarity=0.236 Sum_probs=135.9
Q ss_pred CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCC-EEEEecceEecCCCcccEEE-E
Q 041981 80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGG-NYLISKPLRLPDAGVGNLMI-H 157 (379)
Q Consensus 80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~G-tYlVs~pI~f~gpc~gti~i-g 157 (379)
..++|||+||||++||++|||+|||+||++||+.. ++++|+||+| +|++ +||.|.|||+.++.+ .
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~------------ggg~v~vP~G~~fl~-~~i~l~gpcks~vtL~l 115 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK------------VKTRIVIPAGYTFLV-RPIDLGGPCKAKLTLQI 115 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC------------CCCEEEECCCceEEE-EEEEECCccCCCeEEEE
Confidence 45899999999999999999999999999987532 5789999999 5987 599999999887765 4
Q ss_pred ccEEEecCCC---CCC--eEE----------------EEecCCCCCCCCC-----c-cccceeEEEEe--cccccCCceE
Q 041981 158 GGTLRASDDF---PTD--GYL----------------IDLSASKSSSSYN-----Y-EYITLEDLMFD--SNYRGGAISV 208 (379)
Q Consensus 158 dGtI~A~~~f---~gd--~~l----------------I~g~~~~~~~~~~-----~-~~i~lrnl~~D--~n~~~~gi~~ 208 (379)
+|+|+|+.+. ++. ..| |+|.+..||...+ + ....++-|.|. .+....++++
T Consensus 116 ~g~l~~~~d~~~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl 195 (443)
T PLN02793 116 SGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNV 195 (443)
T ss_pred EEEEEccCChHHccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEE
Confidence 7999998743 321 112 3334433442211 1 11124455555 2456778888
Q ss_pred EcccceE----------EeeEEEEe----ecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEec-CCcc-E
Q 041981 209 INSLRTS----------IDNCYIAR----FTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLM-GNDN-A 272 (379)
Q Consensus 209 ~nSq~~~----------I~N~~i~~----~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~-gn~~-~ 272 (379)
+||+..+ |+|++|.. .||||||+..+++|.|+||.|.+- |.. |.+. +..+ .
T Consensus 196 ~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-----DDc--------Iaik~~s~nI~ 262 (443)
T PLN02793 196 IDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-----DDC--------ISIVGNSSRIK 262 (443)
T ss_pred EcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-----CCe--------EEecCCcCCEE
Confidence 8877644 34555544 399999999999999999999874 332 2332 2233 6
Q ss_pred EEEEEEEecceeEEEccc-----ceeeeeeEEecCceeeeeeeeEEe
Q 041981 273 VTDVVIFSAAVGIMVSGQ-----ANTFSGVHCYNKATGFGGTGIYLK 314 (379)
Q Consensus 273 vsD~~i~~g~~G~~v~gq-----qn~i~~i~~~n~~Tg~~G~GI~~~ 314 (379)
|.++....| .|+.++.. ..-++||.+.||.-.---+|+.+|
T Consensus 263 I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIK 308 (443)
T PLN02793 263 IRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIK 308 (443)
T ss_pred EEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEE
Confidence 666665433 45555542 123566666665433222444444
No 3
>PLN02218 polygalacturonase ADPG
Probab=99.94 E-value=7.9e-25 Score=224.01 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=132.5
Q ss_pred CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCC-EEEEecceEecCCCcccEEE-E
Q 041981 80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGG-NYLISKPLRLPDAGVGNLMI-H 157 (379)
Q Consensus 80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~G-tYlVs~pI~f~gpc~gti~i-g 157 (379)
++++|||+||||+|||++|||+|||+||++||+.. |+++|+||+| +|++ +||.|.|||+..+.+ .
T Consensus 64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~------------Ggg~v~vP~G~tyl~-~~i~l~gp~ks~~~l~l 130 (431)
T PLN02218 64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSN------------GAVNLLVPKGNTYLL-KSIQLTGPCKSIRTVQI 130 (431)
T ss_pred CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcC------------CCcEEEECCCCeEEE-eeeEecCccCCceEEEE
Confidence 56789999999999999999999999999997532 5679999999 6998 599999999876554 4
Q ss_pred ccEEEecCC---CCCCeEE----------EEe--------cCCCCCCCCCc------cccceeEEEEe--cccccCCceE
Q 041981 158 GGTLRASDD---FPTDGYL----------IDL--------SASKSSSSYNY------EYITLEDLMFD--SNYRGGAISV 208 (379)
Q Consensus 158 dGtI~A~~~---f~gd~~l----------I~g--------~~~~~~~~~~~------~~i~lrnl~~D--~n~~~~gi~~ 208 (379)
+|+|+|+++ |+....| |+| .+..||...+. +...++-|.|. .+....++++
T Consensus 131 ~g~L~~s~d~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl 210 (431)
T PLN02218 131 FGTLSASQKRSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRV 210 (431)
T ss_pred EEEEEeCCChhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEE
Confidence 799999865 3221112 222 22224422111 11223455554 3556788998
Q ss_pred EcccceEE----------eeEEEEe----ecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCc-c-E
Q 041981 209 INSLRTSI----------DNCYIAR----FTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGND-N-A 272 (379)
Q Consensus 209 ~nSq~~~I----------~N~~i~~----~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~-~-~ 272 (379)
+||+..+| +|++|.. .||||||+.++++|.|++|.|.+- |.. |.|..++ + .
T Consensus 211 ~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tG-----DDc--------IaIksgs~nI~ 277 (431)
T PLN02218 211 RNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTG-----DDC--------ISIESGSQNVQ 277 (431)
T ss_pred EcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecC-----Cce--------EEecCCCceEE
Confidence 88876443 4445543 299999999999999999999884 442 3333333 4 7
Q ss_pred EEEEEEEecceeEEEccc-----ceeeeeeEEecC
Q 041981 273 VTDVVIFSAAVGIMVSGQ-----ANTFSGVHCYNK 302 (379)
Q Consensus 273 vsD~~i~~g~~G~~v~gq-----qn~i~~i~~~n~ 302 (379)
|.|+.+.. ..|+.++.. ...+++|++.||
T Consensus 278 I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~ 311 (431)
T PLN02218 278 INDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGA 311 (431)
T ss_pred EEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEcc
Confidence 77777643 346666542 124666666665
No 4
>PLN02155 polygalacturonase
Probab=99.93 E-value=1.6e-24 Score=219.46 Aligned_cols=155 Identities=25% Similarity=0.334 Sum_probs=110.9
Q ss_pred CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ec
Q 041981 80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HG 158 (379)
Q Consensus 80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gd 158 (379)
..++|||+||||++||+||||+|||+||++||... |+++|+||+|+|++ +||.|.|||+.++.+ .+
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~------------gGg~v~vP~G~yl~-g~i~l~gpcksnv~l~l~ 90 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSA------------SSATVVVPTGTFLL-KVITFGGPCKSKITFQVA 90 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccC------------CCeEEEECCCcEEE-EEEEEcccCCCCceEEEe
Confidence 34689999999999999999999999999887532 57899999999997 599999999888765 36
Q ss_pred cEEEecCCCCC---CeEEEE---------------ecCCCCCC---CCCccccceeEEEEe--cccccCCceEEcccceE
Q 041981 159 GTLRASDDFPT---DGYLID---------------LSASKSSS---SYNYEYITLEDLMFD--SNYRGGAISVINSLRTS 215 (379)
Q Consensus 159 GtI~A~~~f~g---d~~lI~---------------g~~~~~~~---~~~~~~i~lrnl~~D--~n~~~~gi~~~nSq~~~ 215 (379)
|+|++++++.. ..+|+. +.+..||. ...+....+|-+.|. .+....+++++||+..+
T Consensus 91 G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~ 170 (394)
T PLN02155 91 GTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSH 170 (394)
T ss_pred eEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeE
Confidence 99999987632 123443 22222221 111111122334443 34566788888877644
Q ss_pred E----------eeEEEEe----ecCCceeEeeeeeEEEecceeeee
Q 041981 216 I----------DNCYIAR----FTSNGILVQSGHETYIRNSFLGQH 247 (379)
Q Consensus 216 I----------~N~~i~~----~ntdGIhi~~s~~v~I~ns~Ig~~ 247 (379)
+ +|++|.. .|||||++..+++|.|+||.|.+-
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~g 216 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTG 216 (394)
T ss_pred EEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecC
Confidence 3 4455543 399999999999999999988873
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.93 E-value=3.5e-24 Score=219.82 Aligned_cols=194 Identities=20% Similarity=0.280 Sum_probs=132.0
Q ss_pred CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCC-EEEEecceEecCCCccc-EEE-
Q 041981 80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGG-NYLISKPLRLPDAGVGN-LMI- 156 (379)
Q Consensus 80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~G-tYlVs~pI~f~gpc~gt-i~i- 156 (379)
++++|||+||||++||++|||+|||+||++||... ++++|+||+| +|++ +||.|.|||+++ +.+
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~------------ggg~v~VP~G~~yl~-~pl~l~gpck~~~~~~~ 86 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGT------------GDGQFVVPAGMTFML-QPLKFQGSCKSTPVFVQ 86 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhcc------------CCCEEEECCCceEEe-eeeEeCCCccCcceeec
Confidence 56789999999999999999999999999997532 5789999999 5887 599999999875 444
Q ss_pred EccEEEecCC--CCCC-eEEEE----------------ecCCCCCCCCCccccceeEEEEe--cccccCCceEEcccceE
Q 041981 157 HGGTLRASDD--FPTD-GYLID----------------LSASKSSSSYNYEYITLEDLMFD--SNYRGGAISVINSLRTS 215 (379)
Q Consensus 157 gdGtI~A~~~--f~gd-~~lI~----------------g~~~~~~~~~~~~~i~lrnl~~D--~n~~~~gi~~~nSq~~~ 215 (379)
.+|+|+|+.. |.+. ..||. |.+..||... ....+-|.|. .+....+++++||+..+
T Consensus 87 i~G~i~ap~~~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~---~~rP~~l~f~~~~nv~I~gitl~NSp~w~ 163 (456)
T PLN03003 87 MLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK---GSRPTALKFRSCNNLRLSGLTHLDSPMAH 163 (456)
T ss_pred cCceEecCccccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc---cCCceEEEEEecCCcEEeCeEEecCCcEE
Confidence 4799999764 3221 12432 2232233221 1224455555 35677889988888744
Q ss_pred E----------eeEEEEe----ecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCC-cc-EEEEEEEE
Q 041981 216 I----------DNCYIAR----FTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGN-DN-AVTDVVIF 279 (379)
Q Consensus 216 I----------~N~~i~~----~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn-~~-~vsD~~i~ 279 (379)
+ +|++|.. .||||||+..+++|.|+||.|.+- |.. |.+..+ .+ .|.++...
T Consensus 164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tG-----DDC--------Iaiksgs~NI~I~n~~c~ 230 (456)
T PLN03003 164 IHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATG-----DDC--------IAINSGTSNIHISGIDCG 230 (456)
T ss_pred EEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecC-----CCe--------EEeCCCCccEEEEeeEEE
Confidence 3 4444443 299999999999999999999884 432 333333 24 66677664
Q ss_pred ecceeEEEccc-----ceeeeeeEEecCc
Q 041981 280 SAAVGIMVSGQ-----ANTFSGVHCYNKA 303 (379)
Q Consensus 280 ~g~~G~~v~gq-----qn~i~~i~~~n~~ 303 (379)
.| .|+.++.. ...++||++.||.
T Consensus 231 ~G-HGISIGSlg~~g~~~~V~NV~v~n~~ 258 (456)
T PLN03003 231 PG-HGISIGSLGKDGETATVENVCVQNCN 258 (456)
T ss_pred CC-CCeEEeeccCCCCcceEEEEEEEeeE
Confidence 43 45555442 1246666666664
No 6
>PLN03010 polygalacturonase
Probab=99.92 E-value=3.4e-23 Score=210.70 Aligned_cols=152 Identities=20% Similarity=0.341 Sum_probs=105.7
Q ss_pred CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCC-EEEEecceEecCCCcc-cEEE-
Q 041981 80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGG-NYLISKPLRLPDAGVG-NLMI- 156 (379)
Q Consensus 80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~G-tYlVs~pI~f~gpc~g-ti~i- 156 (379)
..++|||+||||++||++|||+|||+||++||... + ++++|+||+| +|+++ ||.|.+||+. ++.+
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~--g---------~~g~v~vP~G~~yl~~-~i~l~~pc~~~~v~l~ 110 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGE--G---------NINTLLIPSGKTYLLQ-PIEFKGPCKSTSIKVQ 110 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCC--C---------CceEEEECCCCeEEEE-eEEecCCCCCCcEEEE
Confidence 45789999999999999999999999999986421 0 1379999999 79985 9999999975 4554
Q ss_pred EccEEEecCCC---CC--CeEEEEecCCC----------CCCCCCccccceeEEEEe--cccccCCceEEcccc------
Q 041981 157 HGGTLRASDDF---PT--DGYLIDLSASK----------SSSSYNYEYITLEDLMFD--SNYRGGAISVINSLR------ 213 (379)
Q Consensus 157 gdGtI~A~~~f---~g--d~~lI~g~~~~----------~~~~~~~~~i~lrnl~~D--~n~~~~gi~~~nSq~------ 213 (379)
.+|+|++++++ +. ...|+.+.+.. ..+++.+.. .|.|. .+....+++++||+.
T Consensus 111 l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~----~l~~~~~~nv~v~gitl~nsp~~~i~i~ 186 (409)
T PLN03010 111 LDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE----ALHISKCDNLTINGITSIDSPKNHISIK 186 (409)
T ss_pred EccEEEccCChhhccCCCCcceEEEecccccEEeeceEEeCCCccccc----eEEEEeecCeEEeeeEEEcCCceEEEEe
Confidence 47999999864 22 11244322211 001111110 12232 344556777777665
Q ss_pred ----eEEeeEEEEe----ecCCceeEeeeeeEEEecceeeee
Q 041981 214 ----TSIDNCYIAR----FTSNGILVQSGHETYIRNSFLGQH 247 (379)
Q Consensus 214 ----~~I~N~~i~~----~ntdGIhi~~s~~v~I~ns~Ig~~ 247 (379)
+.|+|++|.. .|||||++..+++|.|++|.|.+-
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~g 228 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTG 228 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecC
Confidence 4445666654 399999999999999999999883
No 7
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.92 E-value=3.4e-23 Score=210.54 Aligned_cols=152 Identities=21% Similarity=0.283 Sum_probs=107.9
Q ss_pred CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCccc--EEEE
Q 041981 80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGN--LMIH 157 (379)
Q Consensus 80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gt--i~ig 157 (379)
..++|||+||||+|||++|||+|||+||++||+.. |+++|+||+|+|++. ||.|.|||+.. +.+
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~------------Ggg~V~vP~G~yl~g-~i~lkgpc~~~s~v~l- 98 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACAST------------GAVTLLIPPGTYYIG-PVQFHGPCTNVSSLTF- 98 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccC------------CCeEEEECCCeEEEE-eEEeCCCcCcceeEEE-
Confidence 55789999999999999999999999999987532 578999999999985 99999999753 333
Q ss_pred ccEEEecCCC---CCC-e---------------EEEEecCCCCCCCC-C----ccccceeEEEEe--cccccCCceEEcc
Q 041981 158 GGTLRASDDF---PTD-G---------------YLIDLSASKSSSSY-N----YEYITLEDLMFD--SNYRGGAISVINS 211 (379)
Q Consensus 158 dGtI~A~~~f---~gd-~---------------~lI~g~~~~~~~~~-~----~~~i~lrnl~~D--~n~~~~gi~~~nS 211 (379)
+|++++++ +.. . -.|+|.+..||... + .....++-|.|. .+....+++++||
T Consensus 99 --~L~~s~d~~~y~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS 176 (404)
T PLN02188 99 --TLKAATDLSRYGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS 176 (404)
T ss_pred --EEEcCCCHHHCCCccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC
Confidence 88888764 211 1 13444444343211 0 111123444443 2445677888876
Q ss_pred cc----------eEEeeEEEEe----ecCCceeEeeeeeEEEecceeeee
Q 041981 212 LR----------TSIDNCYIAR----FTSNGILVQSGHETYIRNSFLGQH 247 (379)
Q Consensus 212 q~----------~~I~N~~i~~----~ntdGIhi~~s~~v~I~ns~Ig~~ 247 (379)
+. +.|+|++|.. .|||||++..+++|.|+||+|.+-
T Consensus 177 p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G 226 (404)
T PLN02188 177 KFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG 226 (404)
T ss_pred CCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC
Confidence 65 3445555554 299999999999999999998874
No 8
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.88 E-value=2.6e-21 Score=176.74 Aligned_cols=203 Identities=24% Similarity=0.262 Sum_probs=128.7
Q ss_pred eeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEEEcc---
Q 041981 83 VYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGG--- 159 (379)
Q Consensus 83 v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~igdG--- 159 (379)
.+||+||||+|||++|||+|||+||+++... ++.+||||+|+|++++||.+++ +..+.++|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~-------------~g~~v~~P~G~Y~i~~~l~~~s---~v~l~G~g~~~ 64 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAA-------------GGGVVYFPPGTYRISGTLIIPS---NVTLRGAGGNS 64 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCST-------------TSEEEEE-SEEEEESS-EEE-T---TEEEEESSTTT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccC-------------CCeEEEEcCcEEEEeCCeEcCC---CeEEEccCCCe
Confidence 3799999999999999999999999555321 4789999999999999999993 54555652
Q ss_pred -EEEecCCCCCC---eEEEEecCCCCCCCCCccccceeEEEEeccccc-----CCceEEcccceEEeeEEEEeecCCcee
Q 041981 160 -TLRASDDFPTD---GYLIDLSASKSSSSYNYEYITLEDLMFDSNYRG-----GAISVINSLRTSIDNCYIARFTSNGIL 230 (379)
Q Consensus 160 -tI~A~~~f~gd---~~lI~g~~~~~~~~~~~~~i~lrnl~~D~n~~~-----~gi~~~nSq~~~I~N~~i~~~ntdGIh 230 (379)
+++........ ......+. .......+++|+.||+.... .++++..++.+.|+||++.+.+.+||.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~ 139 (225)
T PF12708_consen 65 TILFLSGSGDSFSVVPGIGVFDS-----GNSNIGIQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIY 139 (225)
T ss_dssp EEEEECTTTSTSCCEEEEEECCS-----CSCCEEEEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEE
T ss_pred eEEEecCcccccccccceeeeec-----CCCCceEEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEE
Confidence 34322221111 11111111 01111145999999986533 467888899999999999999899998
Q ss_pred EeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc--EEEEEEEEecceeEEEcccceeeeeeEEec-Cceeee
Q 041981 231 VQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN--AVTDVVIFSAAVGIMVSGQANTFSGVHCYN-KATGFG 307 (379)
Q Consensus 231 i~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~--~vsD~~i~~g~~G~~v~gqqn~i~~i~~~n-~~Tg~~ 307 (379)
+.......+.++... .++.++++++ .+.++.+.++..|+..+.|+.+++++.+.+ +.+|+.
T Consensus 140 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~n~~~~~~~~~gi~ 203 (225)
T PF12708_consen 140 FNTGTDYRIIGSTHV----------------SGIFIDNGSNNVIVNNCIFNGGDNGIILGNNNITISNNTFEGNCGNGIN 203 (225)
T ss_dssp EECCEECEEECCEEE----------------EEEEEESCEEEEEEECEEEESSSCSEECEEEEEEEECEEEESSSSESEE
T ss_pred EEccccCcEeecccc----------------eeeeeccceeEEEECCccccCCCceeEeecceEEEEeEEECCccceeEE
Confidence 875444444444211 1444454433 448899999999966666788888888877 655552
Q ss_pred ---eeeeEEecccccceeEecce
Q 041981 308 ---GTGIYLKLPGNTQTRIVNSY 327 (379)
Q Consensus 308 ---G~GI~~~~~g~~~~~I~nCy 327 (379)
+..+. +++++|.||.
T Consensus 204 i~~~~~~~-----i~n~~i~~~~ 221 (225)
T PF12708_consen 204 IEGGSNII-----ISNNTIENCD 221 (225)
T ss_dssp EEECSEEE-----EEEEEEESSS
T ss_pred EECCeEEE-----EEeEEEECCc
Confidence 22211 4667888884
No 9
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=4.2e-13 Score=140.60 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=125.1
Q ss_pred CCCCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEEE
Q 041981 78 TSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIH 157 (379)
Q Consensus 78 ~~~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~ig 157 (379)
++...+++|.+|||++||.+|+++|||+||+++.. .++..|+||+|+|+ +.||.+.+ ..++.+-
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~-------------a~Gg~V~lPaGtyl-sg~l~LKS--~~~L~l~ 140 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACAS-------------AGGGTVLLPAGTYL-SGPLFLKS--NVTLHLA 140 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHhhhh-------------hcCceEEECCceeE-eeeEEEec--ccEEEec
Confidence 44677899999999999999999999999999632 15789999999995 68999996 3444454
Q ss_pred cc-EEEecCC---CCC---------Ce---------EEEEec------CCC----------------------------C
Q 041981 158 GG-TLRASDD---FPT---------DG---------YLIDLS------ASK----------------------------S 181 (379)
Q Consensus 158 dG-tI~A~~~---f~g---------d~---------~lI~g~------~~~----------------------------~ 181 (379)
.| ||+++++ |+. .. ..+.+. ... +
T Consensus 141 egatl~~~~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~ 220 (542)
T COG5434 141 EGATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKW 220 (542)
T ss_pred CCceeeCCCChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhh
Confidence 55 8888764 331 00 011100 000 0
Q ss_pred C--CC---CCccc--cceeEEEEe--cccccCCc----------eEEcccceEEeeEEEEee---cCCceeEeeeeeEEE
Q 041981 182 S--SS---YNYEY--ITLEDLMFD--SNYRGGAI----------SVINSLRTSIDNCYIARF---TSNGILVQSGHETYI 239 (379)
Q Consensus 182 ~--~~---~~~~~--i~lrnl~~D--~n~~~~gi----------~~~nSq~~~I~N~~i~~~---ntdGIhi~~s~~v~I 239 (379)
+ .. ..... +..+.+.|- .|....++ |.+.+..+++.|++|... |+||+.+.++.++.|
T Consensus 221 ~~~~g~~~~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI 300 (542)
T COG5434 221 FSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLI 300 (542)
T ss_pred hhcccchhhcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEE
Confidence 0 00 00000 111122221 12222333 334455566666655543 899999999999999
Q ss_pred ecceeeeecccCCCCCccccceeeEEe---cCCc-c-EEEEEEEEecceeEEEcc------cceeeeeeEEec
Q 041981 240 RNSFLGQHITAGGDPGERNFTGTAINL---MGND-N-AVTDVVIFSAAVGIMVSG------QANTFSGVHCYN 301 (379)
Q Consensus 240 ~ns~Ig~~~~~ggd~~~~~~~gtGI~i---~gn~-~-~vsD~~i~~g~~G~~v~g------qqn~i~~i~~~n 301 (379)
++|+|-+ ||..+.-..|-++.. -+-+ + .|.||.|..|.-|+.++. |...++++++.+
T Consensus 301 ~~~~fdt-----gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~ 368 (542)
T COG5434 301 EGCRFDT-----GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDN 368 (542)
T ss_pred eccEEec-----CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeecc
Confidence 9999988 577777777777662 1112 2 788888776555555433 234555555554
No 10
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.13 E-value=1.2e-08 Score=101.23 Aligned_cols=228 Identities=22% Similarity=0.277 Sum_probs=153.3
Q ss_pred HHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ecc---E-EEecCCCC-CCeEEEEe
Q 041981 103 ILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HGG---T-LRASDDFP-TDGYLIDL 176 (379)
Q Consensus 103 iq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gdG---t-I~A~~~f~-gd~~lI~g 176 (379)
||+|++.|- .+-+|+||+|+|.++++|.+.. ..+++ +.| + |....... ++..++.
T Consensus 1 iQ~Ai~~A~---------------~GDtI~l~~G~Y~~~~~l~I~~---~~Iti~G~g~~~tvid~~~~~~~~~~i~v~- 61 (314)
T TIGR03805 1 LQEALIAAQ---------------PGDTIVLPEGVFQFDRTLSLDA---DGVTIRGAGMDETILDFSGQVGGAEGLLVT- 61 (314)
T ss_pred CHhHHhhCC---------------CCCEEEECCCEEEcceeEEEeC---CCeEEEecCCCccEEecccCCCCCceEEEE-
Confidence 688999982 1569999999999877888873 34544 322 2 22211111 1222222
Q ss_pred cCCCCCCCCCccccceeEEEEecccccCCceEEcccceEEeeEEEEee-------cCCceeEeeeeeEEEecceeeeecc
Q 041981 177 SASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARF-------TSNGILVQSGHETYIRNSFLGQHIT 249 (379)
Q Consensus 177 ~~~~~~~~~~~~~i~lrnl~~D~n~~~~gi~~~nSq~~~I~N~~i~~~-------ntdGIhi~~s~~v~I~ns~Ig~~~~ 249 (379)
...+++++|.+... ...+|.+..+..+.|+++++..- ..+||.+..++++.|++|.+....
T Consensus 62 ----------a~~VtI~~ltI~~~-~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~- 129 (314)
T TIGR03805 62 ----------SDDVTLSDLAVENT-KGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGAS- 129 (314)
T ss_pred ----------eCCeEEEeeEEEcC-CCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCC-
Confidence 24677888888543 34688889999999999988632 357999999999999999985542
Q ss_pred cCCCCCccccceeeEEecCCcc-EEEEEEEEecceeEEEc-ccceeeeeeEEecCceeeeeeeeEEe-----------cc
Q 041981 250 AGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAVGIMVS-GQANTFSGVHCYNKATGFGGTGIYLK-----------LP 316 (379)
Q Consensus 250 ~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~G~~v~-gqqn~i~~i~~~n~~Tg~~G~GI~~~-----------~~ 316 (379)
| .||.+..+++ .|.+..++....|+.+- .+.+.+++=.++++. .||.++ +.
T Consensus 130 ---d--------~GIyv~~s~~~~v~nN~~~~n~~GI~i~~S~~~~v~~N~~~~N~-----~Gi~v~~~p~~~~~~s~~~ 193 (314)
T TIGR03805 130 ---D--------AGIYVGQSQNIVVRNNVAEENVAGIEIENSQNADVYNNIATNNT-----GGILVFDLPGLPQPGGSNV 193 (314)
T ss_pred ---c--------ccEEECCCCCeEEECCEEccCcceEEEEecCCcEEECCEEeccc-----eeEEEeecCCCCcCCccce
Confidence 1 4888877666 88888898888898884 344555544455543 455552 11
Q ss_pred cccceeEecceec--------------cceEEEcCCccEEEEceeeeec--ceeEeeec---------cc-----eeeee
Q 041981 317 GNTQTRIVNSYMD--------------YTGIVAEDPVQLHISSSFFLGD--AFIVLKSI---------NG-----VAKGV 366 (379)
Q Consensus 317 g~~~~~I~nCyld--------------y~~i~~~~~~~i~I~~~~~~g~--~~v~l~~~---------~~-----~~~~~ 366 (379)
=++.|+|.+.+.. =+||.+..+.++.|.+|.|.+. +.|++-+- ++ ..+.+
T Consensus 194 ~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (314)
T TIGR03805 194 RVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPYPRNI 273 (314)
T ss_pred EEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCCCcce
Confidence 1567777766432 1277777888999999999998 44444311 11 55789
Q ss_pred EEEeeeccCCC
Q 041981 367 NIVDNLFSGKN 377 (379)
Q Consensus 367 ~i~~n~f~~~~ 377 (379)
.|.+|.|....
T Consensus 274 ~i~~N~~~~~g 284 (314)
T TIGR03805 274 SIHDNTFSDGG 284 (314)
T ss_pred EEEccEeecCC
Confidence 99999998763
No 11
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.08 E-value=3.7e-09 Score=105.08 Aligned_cols=173 Identities=24% Similarity=0.277 Sum_probs=100.5
Q ss_pred CccEEEEcCCEEEEecceEecCCCcccEE-EEccEEEecCC---CCCCeEEE----------------EecCCCCCCCCC
Q 041981 127 GGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGGTLRASDD---FPTDGYLI----------------DLSASKSSSSYN 186 (379)
Q Consensus 127 ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdGtI~A~~~---f~gd~~lI----------------~g~~~~~~~~~~ 186 (379)
++.+|++|+|+|++. ||.|.+||.-... ..+|+++++.. ++. ..|| +|.+..||...+
T Consensus 5 ~~~~v~vP~g~~~~~-~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~ 82 (326)
T PF00295_consen 5 GGGTVVVPAGTYLLG-PLFLKSTLHSDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWWDGSG 82 (326)
T ss_dssp EEESEEESTSTEEEE-ETSEETECETTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTCSSCT
T ss_pred cCCEEEECCCCeEEc-eeEEEcccCCCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhhcccc
Confidence 456899999999985 9999987754433 35788888732 221 2333 344433442221
Q ss_pred ----ccccceeEEEEec--ccccCCceEEcccc----------eEEeeEEEEe----ecCCceeEeeeeeEEEecceeee
Q 041981 187 ----YEYITLEDLMFDS--NYRGGAISVINSLR----------TSIDNCYIAR----FTSNGILVQSGHETYIRNSFLGQ 246 (379)
Q Consensus 187 ----~~~i~lrnl~~D~--n~~~~gi~~~nSq~----------~~I~N~~i~~----~ntdGIhi~~s~~v~I~ns~Ig~ 246 (379)
.....++-|.|+. +....++++++|+. +.|++++|.. .|||||++..++++.|+||+|..
T Consensus 83 ~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~ 162 (326)
T PF00295_consen 83 DANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN 162 (326)
T ss_dssp THCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES
T ss_pred ccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc
Confidence 1222344455542 45566777777665 3344555554 28999999999999999999877
Q ss_pred ecccCCCCCccccceeeEEecCCc-c-EEEEEEEEecceeEEEccc-----ceeeeeeEEecCceeeeeeeeEEec
Q 041981 247 HITAGGDPGERNFTGTAINLMGND-N-AVTDVVIFSAAVGIMVSGQ-----ANTFSGVHCYNKATGFGGTGIYLKL 315 (379)
Q Consensus 247 ~~~~ggd~~~~~~~gtGI~i~gn~-~-~vsD~~i~~g~~G~~v~gq-----qn~i~~i~~~n~~Tg~~G~GI~~~~ 315 (379)
. |.. |.+..+. + .|.++.+.. ..|+.++.. +..+++|.|.||.---.-+|+.++.
T Consensus 163 g-----DD~--------Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt 224 (326)
T PF00295_consen 163 G-----DDC--------IAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKT 224 (326)
T ss_dssp S-----SES--------EEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEE
T ss_pred c-----cCc--------ccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEE
Confidence 4 433 3333333 3 777777754 344444322 2457788887776544446666654
No 12
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.46 E-value=1.6e-06 Score=74.20 Aligned_cols=150 Identities=24% Similarity=0.345 Sum_probs=87.7
Q ss_pred CceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecce
Q 041981 205 AISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAV 283 (379)
Q Consensus 205 gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~ 283 (379)
|+.+.+...+.|+||+|.+...+||++..+..+.|++|.|.. .+.||.+.+..+ .+.++.|.....
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-------------~~~gi~~~~~~~~~i~~~~~~~~~~ 68 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-------------GGYGIYVSGGSNVTISNNTISDNGS 68 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-------------STTSEEEECCES-EEES-EEES-SE
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-------------CCcEEEEecCCCeEEECeEEEEccc
Confidence 455556666778888888877888888877777888887766 125666666544 888888877667
Q ss_pred eEEEc-ccceeeeeeEEecCceeeeeeeeEEecccccceeEecceecc---ceEEEcCCc--cEEEEceeeeecceeEee
Q 041981 284 GIMVS-GQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDY---TGIVAEDPV--QLHISSSFFLGDAFIVLK 357 (379)
Q Consensus 284 G~~v~-gqqn~i~~i~~~n~~Tg~~G~GI~~~~~g~~~~~I~nCyldy---~~i~~~~~~--~i~I~~~~~~g~~~v~l~ 357 (379)
|+.+. ....++++.++.++.. .||.+.. ..+...|.+|.+.. .||.+.+.. ++.|.+|.|.+...--+.
T Consensus 69 ~i~~~~~~~~~i~~~~i~~~~~----~gi~~~~-~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~ 143 (158)
T PF13229_consen 69 GIYVSGSSNITIENNRIENNGD----YGIYISN-SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIY 143 (158)
T ss_dssp EEECCS-CS-EEES-EEECSSS-----SCE-TC-EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE
T ss_pred eEEEEecCCceecCcEEEcCCC----ccEEEec-cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEE
Confidence 77764 3467788888877743 2665541 12445555555543 467777766 888888888887755554
Q ss_pred eccceeeeeEEEeeec
Q 041981 358 SINGVAKGVNIVDNLF 373 (379)
Q Consensus 358 ~~~~~~~~~~i~~n~f 373 (379)
-..+.- ++.|.+|-|
T Consensus 144 ~~~~~~-~~~v~~n~~ 158 (158)
T PF13229_consen 144 LISGSS-NCTVTNNTF 158 (158)
T ss_dssp -TT-SS---EEES-E-
T ss_pred EECCCC-eEEEECCCC
Confidence 443322 677777765
No 13
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.23 E-value=3.1e-05 Score=72.76 Aligned_cols=81 Identities=30% Similarity=0.370 Sum_probs=35.8
Q ss_pred ceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEeccee
Q 041981 206 ISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAVG 284 (379)
Q Consensus 206 i~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~G 284 (379)
+.+..+....|.+++|... ..||++..++...|+++.+... ..||.+....+ .|.+..|.....|
T Consensus 38 i~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-------------~~Gi~l~~s~~~~I~~N~i~~n~~G 103 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-------------GYGIYLMGSSNNTISNNTISNNGYG 103 (236)
T ss_pred EEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-------------CCCEEEEcCCCcEEECCEecCCCce
Confidence 3444444455555444443 4455555444444444443332 13444444332 4445555444445
Q ss_pred EEEcc-cceeeeeeEEe
Q 041981 285 IMVSG-QANTFSGVHCY 300 (379)
Q Consensus 285 ~~v~g-qqn~i~~i~~~ 300 (379)
+.+.. ..++|++-.+.
T Consensus 104 I~l~~s~~~~I~~N~i~ 120 (236)
T PF05048_consen 104 IYLYGSSNNTISNNTIS 120 (236)
T ss_pred EEEeeCCceEEECcEEe
Confidence 54432 22344444443
No 14
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.10 E-value=2.2e-05 Score=67.19 Aligned_cols=130 Identities=25% Similarity=0.352 Sum_probs=86.1
Q ss_pred CceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecceeEEEcc-cceeeeeeEEecCce
Q 041981 227 NGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAVGIMVSG-QANTFSGVHCYNKAT 304 (379)
Q Consensus 227 dGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~G~~v~g-qqn~i~~i~~~n~~T 304 (379)
+||++..+..+.|++|.|... .+.||.+.+.+. .|.++.|.....|+.+.+ ...++++..+.++.
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~------------~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~~~~~~i~~~~~~~~~- 67 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNN------------GGDGIHVSGSSNITIENCTISNGGYGIYVSGGSNVTISNNTISDNG- 67 (158)
T ss_dssp -CEEETTCEC-EEESEEEESS------------SSECEEE-SSCESEEES-EEESSTTSEEEECCES-EEES-EEES-S-
T ss_pred CEEEEECCcCeEEeeeEEEeC------------CCeEEEEEcCCCeEEECeEEECCCcEEEEecCCCeEEECeEEEEcc-
Confidence 589999889999999998876 358899998888 999999999889999976 57899999998887
Q ss_pred eeeeeeeEEeccc---ccceeEecceeccceEEEcC-CccEEEEceeeeecceeEeeeccceeeeeEEEeeeccC
Q 041981 305 GFGGTGIYLKLPG---NTQTRIVNSYMDYTGIVAED-PVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSG 375 (379)
Q Consensus 305 g~~G~GI~~~~~g---~~~~~I~nCyldy~~i~~~~-~~~i~I~~~~~~g~~~v~l~~~~~~~~~~~i~~n~f~~ 375 (379)
.|+.+.... +..++|.+|. -.||.+.+ ..++.|.+|.|.....-.+....+.-..+.|.+|.|.+
T Consensus 68 ----~~i~~~~~~~~~i~~~~i~~~~--~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~ 136 (158)
T PF13229_consen 68 ----SGIYVSGSSNITIENNRIENNG--DYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISN 136 (158)
T ss_dssp ----EEEECCS-CS-EEES-EEECSS--S-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEEC
T ss_pred ----ceEEEEecCCceecCcEEEcCC--CccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEe
Confidence 555554211 4556666662 22899988 88999999999998755555554433345555555554
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.85 E-value=0.0011 Score=65.93 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=104.8
Q ss_pred cccceeEEEEecc------cccCCceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccce
Q 041981 188 EYITLEDLMFDSN------YRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTG 261 (379)
Q Consensus 188 ~~i~lrnl~~D~n------~~~~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~g 261 (379)
..+.++++.+..+ ...-|+....|+.+.|++|++.+....||.++.++++.|+++.+-. +.
T Consensus 86 ~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~-------------n~ 152 (314)
T TIGR03805 86 DGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEE-------------NV 152 (314)
T ss_pred CCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEcc-------------Cc
Confidence 3566788888643 2345889999999999999999976679999999999999998743 22
Q ss_pred eeEEecCCcc-EEEEEEEEecceeEEE---------cccceeeeeeEEecCcee------------eeeeeeEEeccc--
Q 041981 262 TAINLMGNDN-AVTDVVIFSAAVGIMV---------SGQANTFSGVHCYNKATG------------FGGTGIYLKLPG-- 317 (379)
Q Consensus 262 tGI~i~gn~~-~vsD~~i~~g~~G~~v---------~gqqn~i~~i~~~n~~Tg------------~~G~GI~~~~~g-- 317 (379)
.||.++.+.+ .|.+-.++....|+.+ .+...++++=.+.+..+. ..|.||.+....
T Consensus 153 ~GI~i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v 232 (314)
T TIGR03805 153 AGIEIENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDV 232 (314)
T ss_pred ceEEEEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccce
Confidence 5777775544 7888888777778877 233344444344433322 145677665443
Q ss_pred -ccceeEecceeccceEE------------Ec------CCccEEEEceeeeecce
Q 041981 318 -NTQTRIVNSYMDYTGIV------------AE------DPVQLHISSSFFLGDAF 353 (379)
Q Consensus 318 -~~~~~I~nCyldy~~i~------------~~------~~~~i~I~~~~~~g~~~ 353 (379)
+..|+|.+|+. .||. .. -|.+++|-+|.|.+.+.
T Consensus 233 ~I~~N~i~~n~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~N~~~~~g~ 285 (314)
T TIGR03805 233 EIFGNVISNNDT--ANVLISSYHSTGLPDQPPDDGFDPYPRNISIHDNTFSDGGT 285 (314)
T ss_pred EEECCEEeCCcc--eeEEEEecccccCCCCCcCCCccCCCcceEEEccEeecCCC
Confidence 68899999954 3332 11 24599999999998754
No 16
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.79 E-value=0.005 Score=62.98 Aligned_cols=174 Identities=18% Similarity=0.273 Sum_probs=110.1
Q ss_pred EeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCC-EEEEecceEecCCCcccEEEEcc-EEE
Q 041981 85 GVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGG-NYLISKPLRLPDAGVGNLMIHGG-TLR 162 (379)
Q Consensus 85 nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~G-tYlVs~pI~f~gpc~gti~igdG-tI~ 162 (379)
.|+-|=..|+- | +.+||+. -++|+|-|| +|.|++||.++++|| +||.| +++
T Consensus 45 qvkt~~~~P~e--D----le~~I~~------------------haKVaL~Pg~~Y~i~~~V~I~~~cY---IiGnGA~V~ 97 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQ------------------HAKVALRPGAVYVIRKPVNIRSCCY---IIGNGATVR 97 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHh------------------cCEEEeCCCCEEEEeeeEEecceEE---EECCCEEEE
Confidence 78888888864 4 2334444 357888888 799999999998763 45554 444
Q ss_pred ecCCCCCCeEEEEecCCCCCCCCCccccceeEEEEecccccCCceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecc
Q 041981 163 ASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNS 242 (379)
Q Consensus 163 A~~~f~gd~~lI~g~~~~~~~~~~~~~i~lrnl~~D~n~~~~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns 242 (379)
.... .+-+.-+.-.+. ...-..-+.+++.|++|+....-.++-+.+.-.+.|.+|.|.+++ |.-+.....+.|++|
T Consensus 98 v~~~-~~~~f~v~~~~~-~P~V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~--g~cl~~~~~~~VrGC 173 (386)
T PF01696_consen 98 VNGP-DRVAFRVCMQSM-GPGVVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH--GTCLESWAGGEVRGC 173 (386)
T ss_pred EeCC-CCceEEEEcCCC-CCeEeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc--ceeEEEcCCcEEeee
Confidence 4211 111111111110 111123356788999999877667788888888999999999974 333444456677777
Q ss_pred eeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecceeEEEcccceeeeeeEEecCc
Q 041981 243 FLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAVGIMVSGQANTFSGVHCYNKA 303 (379)
Q Consensus 243 ~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~G~~v~gqqn~i~~i~~~n~~ 303 (379)
..-.-- .||.-.+... .|.-++|+...+|+...| ..++++--+.+|.
T Consensus 174 ~F~~C~-------------~gi~~~~~~~lsVk~C~FekC~igi~s~G-~~~i~hn~~~ec~ 221 (386)
T PF01696_consen 174 TFYGCW-------------KGIVSRGKSKLSVKKCVFEKCVIGIVSEG-PARIRHNCASECG 221 (386)
T ss_pred EEEEEE-------------EEeecCCcceEEeeheeeeheEEEEEecC-CeEEecceecccc
Confidence 542221 4454344444 888899999999996544 5677777776664
No 17
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.76 E-value=0.00052 Score=64.45 Aligned_cols=147 Identities=26% Similarity=0.323 Sum_probs=116.7
Q ss_pred CCceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecc
Q 041981 204 GAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAA 282 (379)
Q Consensus 204 ~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~ 282 (379)
.|+.+.++....|+++.+... .+||.+..+.++.|+++.+... ..||.+.+... .|.+..|....
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~~-------------~~GI~~~~s~~~~i~~n~i~~n~ 79 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISNN-------------RYGIHLMGSSNNTIENNTISNNG 79 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEECC-------------CeEEEEEccCCCEEEeEEEEccC
Confidence 788889999999988888765 7999999999999999976554 37888888876 99999999988
Q ss_pred eeEEEccc-ceeeeeeEEecCceeeeeeeeEEeccc---ccceeEecceeccceEEEcCCccEEEEceeeeecceeEeee
Q 041981 283 VGIMVSGQ-ANTFSGVHCYNKATGFGGTGIYLKLPG---NTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKS 358 (379)
Q Consensus 283 ~G~~v~gq-qn~i~~i~~~n~~Tg~~G~GI~~~~~g---~~~~~I~nCyldy~~i~~~~~~~i~I~~~~~~g~~~v~l~~ 358 (379)
.|+.+... ..+|++-++.++.. ||.+.... +++|.|.+| ..||.+.++.+..|++|.|......-|.-
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~-----GI~l~~s~~~~I~~N~i~~~---~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGY-----GIYLYGSSNNTISNNTISNN---GYGIYLSSSSNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCc-----eEEEeeCCceEEECcEEeCC---CEEEEEEeCCCCEEECeEEeCCCccceEE
Confidence 99999764 47999999988865 77776533 455555544 36999999999999999999996665552
Q ss_pred ccceeeeeEEEeeec
Q 041981 359 INGVAKGVNIVDNLF 373 (379)
Q Consensus 359 ~~~~~~~~~i~~n~f 373 (379)
.. .-.+-.|.+|.|
T Consensus 152 ~~-~s~~n~I~~N~f 165 (236)
T PF05048_consen 152 LS-GSSGNTIYNNNF 165 (236)
T ss_pred ec-cCCCCEEECCCc
Confidence 21 124578999999
No 18
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.27 E-value=0.0038 Score=64.42 Aligned_cols=118 Identities=13% Similarity=0.071 Sum_probs=88.6
Q ss_pred CceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecce
Q 041981 205 AISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAV 283 (379)
Q Consensus 205 gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~ 283 (379)
.+.+.+++.+.|+++++.++----||+..++++.|++-.|-... .+-+.-||+++...+ .|.|+.|..+.+
T Consensus 157 ~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~--------~spNtDGidi~~s~nV~I~n~~I~~GDD 228 (404)
T PLN02188 157 SVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPS--------DSPNTDGIHIERSSGVYISDSRIGTGDD 228 (404)
T ss_pred EEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCC--------CCCCCCcEeeeCcccEEEEeeEEeCCCc
Confidence 44566677778888888887777888989999999998875532 134678999998888 999999999999
Q ss_pred eEEEc--ccceeeeeeEEecCceeeeeeeeEEe-------cccccceeEecceecc--ceEEEc
Q 041981 284 GIMVS--GQANTFSGVHCYNKATGFGGTGIYLK-------LPGNTQTRIVNSYMDY--TGIVAE 336 (379)
Q Consensus 284 G~~v~--gqqn~i~~i~~~n~~Tg~~G~GI~~~-------~~g~~~~~I~nCyldy--~~i~~~ 336 (379)
.+.+. .++.+++++.|.. |.||.+= ..++++..|+||++.- +|+|..
T Consensus 229 cIaiksg~~nI~I~n~~c~~------ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriK 286 (404)
T PLN02188 229 CISIGQGNSQVTITRIRCGP------GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIK 286 (404)
T ss_pred EEEEccCCccEEEEEEEEcC------CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEE
Confidence 99994 4577888877743 3444431 2458888999998754 488875
No 19
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.04 E-value=0.00078 Score=51.86 Aligned_cols=38 Identities=37% Similarity=0.402 Sum_probs=24.6
Q ss_pred ccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecce
Q 041981 91 ADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPL 144 (379)
Q Consensus 91 A~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI 144 (379)
|+|||+||||+||.+|+++.- .+.+|..-+=||.|+ .|
T Consensus 1 A~GDGvtdDt~A~~a~l~a~~---------------~g~~IDg~GlTykVs-~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEASP---------------VGRKIDGAGLTYKVS-SL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----------------TTS-EE-TT-EEEES-S-
T ss_pred CCCccccCcHHHHHHHHhccC---------------CCeEEecCCceEEEe-eC
Confidence 799999999999999999862 255677665699997 44
No 20
>PLN02793 Probable polygalacturonase
Probab=96.93 E-value=0.013 Score=61.26 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=85.6
Q ss_pred CceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecce
Q 041981 205 AISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAV 283 (379)
Q Consensus 205 gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~ 283 (379)
.+.+.++.++.|+++++.+...--+|+..++++.|++-.|-... .+.+.-||++....+ .|.|+.|..+.+
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~--------~spNTDGIdi~~s~nV~I~n~~I~~gDD 250 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPA--------TSPNTDGIHISASRGVVIKDSIVRTGDD 250 (443)
T ss_pred EEEEEeeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCC--------CCCCCCcEeeeccceEEEEeCEEeCCCC
Confidence 45666677777888888876666678888889999987775542 134778999999888 999999999999
Q ss_pred eEEEc--ccceeeeeeEEecCcee--eeeeeeEEecccccceeEecceecc--ceEEEc
Q 041981 284 GIMVS--GQANTFSGVHCYNKATG--FGGTGIYLKLPGNTQTRIVNSYMDY--TGIVAE 336 (379)
Q Consensus 284 G~~v~--gqqn~i~~i~~~n~~Tg--~~G~GI~~~~~g~~~~~I~nCyldy--~~i~~~ 336 (379)
.+.+. .++-+|+|+.|..+ .| +|--|-+-...++++..++||.+.- +|+|+.
T Consensus 251 cIaik~~s~nI~I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIK 308 (443)
T PLN02793 251 CISIVGNSSRIKIRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIK 308 (443)
T ss_pred eEEecCCcCCEEEEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEE
Confidence 99995 34667777776543 11 1111111122347888999998743 477765
No 21
>PLN02218 polygalacturonase ADPG
Probab=96.93 E-value=0.01 Score=61.83 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=85.6
Q ss_pred CceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecce
Q 041981 205 AISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAV 283 (379)
Q Consensus 205 gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~ 283 (379)
.+.+.++..+.|+++++.+.----+|+..++++.|++-.|-... .+-+.-||++.+..+ .|.|+.|..|.+
T Consensus 194 ~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~--------~spNTDGIdi~ss~nV~I~n~~I~tGDD 265 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPA--------DSPNTDGIHITNTQNIRVSNSIIGTGDD 265 (431)
T ss_pred EEEEEccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCC--------CCCCCCcEeecccceEEEEccEEecCCc
Confidence 34556677777888888887667788889999999998775431 224778999999988 999999999999
Q ss_pred eEEEcc--cceeeeeeEEecCceeeeeeeeEEe-------cccccceeEecceecc--ceEEEc
Q 041981 284 GIMVSG--QANTFSGVHCYNKATGFGGTGIYLK-------LPGNTQTRIVNSYMDY--TGIVAE 336 (379)
Q Consensus 284 G~~v~g--qqn~i~~i~~~n~~Tg~~G~GI~~~-------~~g~~~~~I~nCyldy--~~i~~~ 336 (379)
.+.+.+ +.-+++++.|.. |-||.+= ..++++..++||++.- +|+|+.
T Consensus 266 cIaIksgs~nI~I~n~~c~~------GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIK 323 (431)
T PLN02218 266 CISIESGSQNVQINDITCGP------GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIK 323 (431)
T ss_pred eEEecCCCceEEEEeEEEEC------CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEe
Confidence 999864 345666666643 2333321 2347788899998753 477765
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.74 E-value=0.018 Score=60.39 Aligned_cols=121 Identities=13% Similarity=0.125 Sum_probs=90.2
Q ss_pred ccCCceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEe
Q 041981 202 RGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFS 280 (379)
Q Consensus 202 ~~~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~ 280 (379)
++..+++.+++.+.|+++++.++----+|+..++++.|++-.|-... .+-+--||++.+..+ .|.|+.|..
T Consensus 137 rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~--------~spNTDGIDi~~S~nV~I~n~~I~t 208 (456)
T PLN03003 137 RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPE--------SSPNTDGIDVGASSNVVIQDCIIAT 208 (456)
T ss_pred CceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCC--------CCCCCCcEeecCcceEEEEecEEec
Confidence 34467778888888999988887667788888999999987766542 234668999999888 999999999
Q ss_pred cceeEEEcc--cceeeeeeEEecCceeeeeeeeEEec-------ccccceeEecceec--cceEEEc
Q 041981 281 AAVGIMVSG--QANTFSGVHCYNKATGFGGTGIYLKL-------PGNTQTRIVNSYMD--YTGIVAE 336 (379)
Q Consensus 281 g~~G~~v~g--qqn~i~~i~~~n~~Tg~~G~GI~~~~-------~g~~~~~I~nCyld--y~~i~~~ 336 (379)
+.+.+.+.. .+-+++++.|..+ -||.+=- .++++..|+||++. .+|+|+.
T Consensus 209 GDDCIaiksgs~NI~I~n~~c~~G------HGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIK 269 (456)
T PLN03003 209 GDDCIAINSGTSNIHISGIDCGPG------HGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIK 269 (456)
T ss_pred CCCeEEeCCCCccEEEEeeEEECC------CCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEE
Confidence 999999964 3557777777543 3343322 23788889999874 3577765
No 23
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.69 E-value=0.046 Score=53.00 Aligned_cols=114 Identities=24% Similarity=0.270 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEe----cceEecCCCcccEEEEccEEEecCC--CC--CCeE
Q 041981 101 EAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLIS----KPLRLPDAGVGNLMIHGGTLRASDD--FP--TDGY 172 (379)
Q Consensus 101 ~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs----~pI~f~gpc~gti~igdGtI~A~~~--f~--gd~~ 172 (379)
+-|++|++.|. .+.+|+|-||+|.-. -||.++ .+-.++++..-|...+ +. ....
T Consensus 16 ~Ti~~A~~~a~---------------~g~~i~l~~GtY~~~~ge~fPi~i~---~gVtl~G~~~~kG~~~il~~g~~~~~ 77 (246)
T PF07602_consen 16 KTITKALQAAQ---------------PGDTIQLAPGTYSEATGETFPIIIK---PGVTLIGNESNKGQIDILITGGGTGP 77 (246)
T ss_pred HHHHHHHHhCC---------------CCCEEEECCceeccccCCcccEEec---CCeEEeecccCCCcceEEecCCceEE
Confidence 45888888873 256999999999764 256776 3444455421111000 00 1122
Q ss_pred EEEecCCCCC-CC---CCccccceeEEEEecc--cccCCceEEcccceEEeeEEEEeecCCceeEee
Q 041981 173 LIDLSASKSS-SS---YNYEYITLEDLMFDSN--YRGGAISVINSLRTSIDNCYIARFTSNGILVQS 233 (379)
Q Consensus 173 lI~g~~~~~~-~~---~~~~~i~lrnl~~D~n--~~~~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~ 233 (379)
+|++.++... .. ....+.+++.+++-.. .++.++++..+ ...|.||+|.+...+||.+..
T Consensus 78 ~I~g~~~~~~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g 143 (246)
T PF07602_consen 78 TISGGGPDLSGQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNGREGIFVTG 143 (246)
T ss_pred eEeccCccccceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCccccEEEEe
Confidence 4555443211 00 0123445666666543 25566666555 788889999887778877744
No 24
>PLN02665 pectinesterase family protein
Probab=96.63 E-value=0.46 Score=48.69 Aligned_cols=199 Identities=14% Similarity=0.222 Sum_probs=102.2
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ecc---EEEecCCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HGG---TLRASDDFP 168 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gdG---tI~A~~~f~ 168 (379)
.||.. |=.-||+|++++-.. +....+|+|.+|+|. ..|.++-. +.++++ |+| |+..-++-.
T Consensus 74 ~dG~G-df~TIq~AIdaiP~~-----------~~~r~vI~Ik~GvY~--EkV~Ip~~-kp~Itl~G~~~~~tiIt~~~~a 138 (366)
T PLN02665 74 KDGSG-DFKTITDAIKSIPAG-----------NTQRVIIDIGPGEYN--EKITIDRS-KPFVTLYGSPGAMPTLTFDGTA 138 (366)
T ss_pred CCCCC-CccCHHHHHhhCccc-----------CCceEEEEEeCcEEE--EEEEecCC-CCEEEEEecCCCCCEEEECCcc
Confidence 34443 367799999987321 113578999999998 35777631 234443 442 222111100
Q ss_pred CCeEEEEecCCC-CC-CCCCccccceeEEEEeccccc--------CCceE-EcccceEEeeEEEEeecCCceeEeeeeeE
Q 041981 169 TDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRG--------GAISV-INSLRTSIDNCYIARFTSNGILVQSGHET 237 (379)
Q Consensus 169 gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~--------~gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v 237 (379)
.. .+.. +. ......+...+||+|-++... ..+.+ +.+.+..+.||.|.+. -|=+.... ..-
T Consensus 139 ~~------~gT~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~-QDTL~~~~-gr~ 210 (366)
T PLN02665 139 AK------YGTVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGF-QDTLCDDK-GRH 210 (366)
T ss_pred CC------CCCcceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccc-cceeEeCC-CCE
Confidence 00 0000 00 000123455778888776421 11221 2345577789999886 23232222 345
Q ss_pred EEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEeccee--EEEcccc----eeeeeeEEecCceeeeeee
Q 041981 238 YIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAVG--IMVSGQA----NTFSGVHCYNKATGFGGTG 310 (379)
Q Consensus 238 ~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~G--~~v~gqq----n~i~~i~~~n~~Tg~~G~G 310 (379)
+.++|.|..... .|-|+.. ..-+|.|..-..| -.+..|. ..-.+.-|.+|.--=.+..
T Consensus 211 yf~~CyIeG~VD---------------FIFG~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~ 275 (366)
T PLN02665 211 FFKDCYIEGTVD---------------FIFGSGKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTG 275 (366)
T ss_pred EEEeeEEeeccc---------------eeccccceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCc
Confidence 888998877653 2234443 6667776543332 2233321 1123555555542111234
Q ss_pred eEEeccc--ccceeEecceec
Q 041981 311 IYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 311 I~~~~~g--~~~~~I~nCyld 329 (379)
++|=|+= .++.-+.+|||+
T Consensus 276 ~yLGRpW~~ysrvVf~~t~m~ 296 (366)
T PLN02665 276 AYLGRAWMSRPRVVFAYTEMS 296 (366)
T ss_pred eeecCCCCCcceEEEEccccC
Confidence 6666653 678889999886
No 25
>PLN02155 polygalacturonase
Probab=96.40 E-value=0.051 Score=56.04 Aligned_cols=118 Identities=11% Similarity=0.116 Sum_probs=73.0
Q ss_pred CceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecce
Q 041981 205 AISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAV 283 (379)
Q Consensus 205 gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~ 283 (379)
.+.+.+++.+.|+++++.++-.--+|+..++++.|++-.|-.... +-+.-||++....+ .|.|+.|..+.+
T Consensus 147 ~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~--------~~NtDGidi~~s~nV~I~~~~I~~gDD 218 (394)
T PLN02155 147 SISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGN--------SPNTDGFHVQFSTGVTFTGSTVQTGDD 218 (394)
T ss_pred ceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCC--------CCCCCccccccceeEEEEeeEEecCCc
Confidence 355566666667777777665556667777888888776655321 23556777777777 888888888888
Q ss_pred eEEEcc--cceeeeeeEEecCceeeeeeeeEE-------ecccccceeEecceec--cceEEEc
Q 041981 284 GIMVSG--QANTFSGVHCYNKATGFGGTGIYL-------KLPGNTQTRIVNSYMD--YTGIVAE 336 (379)
Q Consensus 284 G~~v~g--qqn~i~~i~~~n~~Tg~~G~GI~~-------~~~g~~~~~I~nCyld--y~~i~~~ 336 (379)
.+.++. +.-+++++.|.. |-||.+ ...++++..++||.+. -+|+|+.
T Consensus 219 cIaik~gs~nI~I~n~~c~~------GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIK 276 (394)
T PLN02155 219 CVAIGPGTRNFLITKLACGP------GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIK 276 (394)
T ss_pred eEEcCCCCceEEEEEEEEEC------CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEE
Confidence 877764 344555555543 222222 1234667777777653 3366664
No 26
>PLN03010 polygalacturonase
Probab=96.34 E-value=0.07 Score=55.32 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=88.7
Q ss_pred ceeEEEEeccccc--C------CceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCcccccee
Q 041981 191 TLEDLMFDSNYRG--G------AISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGT 262 (379)
Q Consensus 191 ~lrnl~~D~n~~~--~------gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gt 262 (379)
.++|+.+.+.... . .+.+.+++.+.|+++++.+..---+|+..++++.|++-.|-... .+.+.-
T Consensus 137 ~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~--------~s~NTD 208 (409)
T PLN03010 137 TVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPE--------TSPNTD 208 (409)
T ss_pred cccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCC--------CCCCCC
Confidence 3456666653321 1 35667788899999999887667788888899999987765532 235678
Q ss_pred eEEecCCcc-EEEEEEEEecceeEEEccc--ceeeeeeEEecCceeeeeeeeEEecc-------cccceeEecceecc--
Q 041981 263 AINLMGNDN-AVTDVVIFSAAVGIMVSGQ--ANTFSGVHCYNKATGFGGTGIYLKLP-------GNTQTRIVNSYMDY-- 330 (379)
Q Consensus 263 GI~i~gn~~-~vsD~~i~~g~~G~~v~gq--qn~i~~i~~~n~~Tg~~G~GI~~~~~-------g~~~~~I~nCyldy-- 330 (379)
||++....+ .|.|+.|..+.+.+.+... .-.++++.|.. |-||.+-.. .+++..|+||++.-
T Consensus 209 GiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~------gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~ 282 (409)
T PLN03010 209 GIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGP------GHGISVGSLGADGANAKVSDVHVTHCTFNQTT 282 (409)
T ss_pred ceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeEC------cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC
Confidence 999988888 9999999999999888642 34444444432 233333222 25677788887743
Q ss_pred ceEEEc
Q 041981 331 TGIVAE 336 (379)
Q Consensus 331 ~~i~~~ 336 (379)
+|+|+.
T Consensus 283 ~GirIK 288 (409)
T PLN03010 283 NGARIK 288 (409)
T ss_pred cceEEE
Confidence 366654
No 27
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.26 E-value=0.067 Score=53.42 Aligned_cols=119 Identities=14% Similarity=0.121 Sum_probs=83.3
Q ss_pred CCceEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecc
Q 041981 204 GAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAA 282 (379)
Q Consensus 204 ~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~ 282 (379)
..+.+.+++.+.|+++++.+..---+++..++++.|++-.|-..... .+.-||++.+..+ .|.|+.|..+.
T Consensus 93 ~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~--------~NtDGid~~~s~nv~I~n~~i~~gD 164 (326)
T PF00295_consen 93 RLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANS--------PNTDGIDIDSSKNVTIENCFIDNGD 164 (326)
T ss_dssp ESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGC--------TS--SEEEESEEEEEEESEEEESSS
T ss_pred ceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCC--------CCcceEEEEeeeEEEEEEeeccccc
Confidence 45667777788888888888766778888899999999888776431 4678999998888 99999999999
Q ss_pred eeEEEccc--ceeeeeeEEecCceeeeeeeeEEecc-------cccceeEecceec--cceEEEc
Q 041981 283 VGIMVSGQ--ANTFSGVHCYNKATGFGGTGIYLKLP-------GNTQTRIVNSYMD--YTGIVAE 336 (379)
Q Consensus 283 ~G~~v~gq--qn~i~~i~~~n~~Tg~~G~GI~~~~~-------g~~~~~I~nCyld--y~~i~~~ 336 (379)
+.+.+.+. .-++++++|.++ .||.+-.. .++...++||.+. ..|+++.
T Consensus 165 D~Iaiks~~~ni~v~n~~~~~g------hGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iK 223 (326)
T PF00295_consen 165 DCIAIKSGSGNILVENCTCSGG------HGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIK 223 (326)
T ss_dssp ESEEESSEECEEEEESEEEESS------SEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEE
T ss_pred CcccccccccceEEEeEEEecc------ccceeeeccCCccccEEEeEEEEEEEeeccceEEEEE
Confidence 99999753 456677776543 23333211 2567777777653 3466654
No 28
>PLN02682 pectinesterase family protein
Probab=96.12 E-value=1.3 Score=45.43 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ecc---EEEecCCCCCCeEEE
Q 041981 99 STEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HGG---TLRASDDFPTDGYLI 174 (379)
Q Consensus 99 dT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gdG---tI~A~~~f~gd~~lI 174 (379)
|=.-||+|++++-.. +....+|+|-+|+|. ..|.++.. +.++++ |+| |+.--++-.... --
T Consensus 81 df~TIQ~AIdavP~~-----------~~~r~vI~Ik~G~Y~--EkV~Ip~~-k~~Itl~G~g~~~TiIt~~~~a~~~-~~ 145 (369)
T PLN02682 81 DFTTIQAAIDSLPVI-----------NLVRVVIKVNAGTYR--EKVNIPPL-KAYITLEGAGADKTIIQWGDTADTP-GP 145 (369)
T ss_pred CccCHHHHHhhcccc-----------CCceEEEEEeCceee--EEEEEecc-CceEEEEecCCCccEEEeccccCcc-CC
Confidence 466799999987321 113678999999997 35777521 345543 542 333211000000 00
Q ss_pred Eec--CCC-CC-CCCCccccceeEEEEeccccc--------CCceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEec
Q 041981 175 DLS--ASK-SS-SSYNYEYITLEDLMFDSNYRG--------GAISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRN 241 (379)
Q Consensus 175 ~g~--~~~-~~-~~~~~~~i~lrnl~~D~n~~~--------~gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~n 241 (379)
++. +.. +. ..........+||+|-++... ..+.+ +++.+..+.||.|.+. -|=+.. ....-+.++
T Consensus 146 ~g~~~gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~-QDTLy~-~~gRqyf~~ 223 (369)
T PLN02682 146 GGRPLGTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGA-QDTLYD-HLGRHYFKD 223 (369)
T ss_pred CCCccccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecc-ccceEE-CCCCEEEEe
Confidence 000 000 00 000123455788888776521 11222 3456677889999986 232222 223458899
Q ss_pred ceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEe--cceeEEEcccc----eeeeeeEEecCceeeeeeeeEEe
Q 041981 242 SFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFS--AAVGIMVSGQA----NTFSGVHCYNKATGFGGTGIYLK 314 (379)
Q Consensus 242 s~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~--g~~G~~v~gqq----n~i~~i~~~n~~Tg~~G~GI~~~ 314 (379)
|.|..... .|=|+.. ..-+|.|.. ...|.+ ..|. ..-.+.-|.+|.---.| -.+|=
T Consensus 224 C~IeG~VD---------------FIFG~g~a~Fe~C~I~s~~~~~G~I-TA~~r~~~~~~~GfvF~~C~itg~g-~~yLG 286 (369)
T PLN02682 224 CYIEGSVD---------------FIFGNGLSLYEGCHLHAIARNFGAL-TAQKRQSVLEDTGFSFVNCKVTGSG-ALYLG 286 (369)
T ss_pred eEEccccc---------------EEecCceEEEEccEEEEecCCCeEE-ecCCCCCCCCCceEEEEeeEecCCC-ceEee
Confidence 98887653 2334443 566676643 123432 2221 11234555555321112 24455
Q ss_pred ccc--ccceeEecceec
Q 041981 315 LPG--NTQTRIVNSYMD 329 (379)
Q Consensus 315 ~~g--~~~~~I~nCyld 329 (379)
|+= .++.-+.+|||+
T Consensus 287 RpW~~yarvVf~~t~m~ 303 (369)
T PLN02682 287 RAWGTFSRVVFAYTYMD 303 (369)
T ss_pred cCCCCcceEEEEeccCC
Confidence 543 678889999885
No 29
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=95.70 E-value=0.23 Score=51.95 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=103.4
Q ss_pred EEEecccccCCceEEcccceEEeeEEEEee------cCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecC
Q 041981 195 LMFDSNYRGGAISVINSLRTSIDNCYIARF------TSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMG 268 (379)
Q Consensus 195 l~~D~n~~~~gi~~~nSq~~~I~N~~i~~~------ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~g 268 (379)
+.||.. ...+..+.++.+.|.+++|.+. ...+|++..++++.|+++.|... .+.||.+++
T Consensus 100 ~vIdG~--~~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gs------------g~FGI~L~~ 165 (455)
T TIGR03808 100 LVFTGG--PSLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGS------------GGNGIWLET 165 (455)
T ss_pred EEEcCC--ceEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcC------------CcceEEEEc
Confidence 455654 3444567788899999988886 36799999999999999988653 137899998
Q ss_pred CccEEEEEEEEe-cceeEEE-cccceeeeeeEEecCceeeeeeeeEEecc--c-----ccceeEec-cee-----c-cce
Q 041981 269 NDNAVTDVVIFS-AAVGIMV-SGQANTFSGVHCYNKATGFGGTGIYLKLP--G-----NTQTRIVN-SYM-----D-YTG 332 (379)
Q Consensus 269 n~~~vsD~~i~~-g~~G~~v-~gqqn~i~~i~~~n~~Tg~~G~GI~~~~~--g-----~~~~~I~n-Cyl-----d-y~~ 332 (379)
.+..|.|-.|.+ ...++.+ ..+..++++=++..+ .-+||.+.|. + ++.|||.+ |-. + -+|
T Consensus 166 ~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~----RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNG 241 (455)
T TIGR03808 166 VSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGA----NDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNA 241 (455)
T ss_pred CcceEecceEeccccceEEEeccCCCEEECCEEEcc----CCCCeEEEEeeecCCcceeeccccccccccCCCcCCcccc
Confidence 877888887766 3455543 223344444444433 3356666655 2 66777776 211 1 347
Q ss_pred EEEcCCccEEEEceeeeecceeEeeeccceeeeeEEEeeecc
Q 041981 333 IVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFS 374 (379)
Q Consensus 333 i~~~~~~~i~I~~~~~~g~~~v~l~~~~~~~~~~~i~~n~f~ 374 (379)
|-+=.+.++.|++|....-++=.+... ..+..+|.+|.|+
T Consensus 242 I~~~~a~~v~V~gN~I~~~r~dgI~~n--sss~~~i~~N~~~ 281 (455)
T TIGR03808 242 INAFRAGNVIVRGNRIRNCDYSAVRGN--SASNIQITGNSVS 281 (455)
T ss_pred EEEEccCCeEEECCEEeccccceEEEE--cccCcEEECcEee
Confidence 777788899999999987764333322 2234445555444
No 30
>PLN02773 pectinesterase
Probab=95.59 E-value=2.2 Score=42.97 Aligned_cols=204 Identities=17% Similarity=0.271 Sum_probs=106.9
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ec---cEEEecCCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HG---GTLRASDDFP 168 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gd---GtI~A~~~f~ 168 (379)
+||..| =.-||+|++++-... ....+|+|.+|+|. ..|.++.. +.++++ ++ .|+..-++..
T Consensus 11 ~dGsGd-f~TIq~Aida~P~~~-----------~~~~~I~Ik~G~Y~--E~V~I~~~-k~~itl~G~~~~~TiI~~~~~a 75 (317)
T PLN02773 11 QDGSGD-YCTVQDAIDAVPLCN-----------RCRTVIRVAPGVYR--QPVYVPKT-KNLITLAGLSPEATVLTWNNTA 75 (317)
T ss_pred CCCCCC-ccCHHHHHhhchhcC-----------CceEEEEEeCceEE--EEEEECcC-CccEEEEeCCCCceEEEccCcc
Confidence 355444 667999999883211 12578999999997 46888642 234543 53 3444322111
Q ss_pred C----Ce-EEEEecCCC-CC-CCCCccccceeEEEEeccccc---CCceE-EcccceEEeeEEEEeecCCceeEeeeeeE
Q 041981 169 T----DG-YLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRG---GAISV-INSLRTSIDNCYIARFTSNGILVQSGHET 237 (379)
Q Consensus 169 g----d~-~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~---~gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v 237 (379)
. +. .-..+++.. +. ..........+||+|.++... ..+.+ +++.+..+.||.|.+. -|=+..+. ..-
T Consensus 76 ~~~~~~~~~~~~g~gT~~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~-QDTL~~~~-gr~ 153 (317)
T PLN02773 76 TKIDHHQASRVIGTGTFGCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGW-QDTLYLHY-GKQ 153 (317)
T ss_pred ccccccccccccCcCccCceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecc-cceeEeCC-CCE
Confidence 0 00 000011110 00 001123455788888876432 12222 3356677889999986 33333322 346
Q ss_pred EEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecceeEEEcccc----eeeeeeEEecCc-eeeee-ee
Q 041981 238 YIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAVGIMVSGQA----NTFSGVHCYNKA-TGFGG-TG 310 (379)
Q Consensus 238 ~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~G~~v~gqq----n~i~~i~~~n~~-Tg~~G-~G 310 (379)
+.++|.|..... .|=|+.. ..-+|.|..-..|.+. .|. ..-.+.-|.+|. |+-+. .-
T Consensus 154 yf~~c~IeG~VD---------------FIFG~g~a~Fe~c~i~s~~~g~IT-A~~r~~~~~~~GfvF~~c~it~~~~~~~ 217 (317)
T PLN02773 154 YLRDCYIEGSVD---------------FIFGNSTALLEHCHIHCKSAGFIT-AQSRKSSQESTGYVFLRCVITGNGGSGY 217 (317)
T ss_pred EEEeeEEeeccc---------------EEeeccEEEEEeeEEEEccCcEEE-CCCCCCCCCCceEEEEccEEecCCCCcc
Confidence 889998877642 2234443 6677777654456543 221 112355555554 22111 12
Q ss_pred eEEeccc--ccceeEecceec
Q 041981 311 IYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 311 I~~~~~g--~~~~~I~nCyld 329 (379)
.+|=|+= .++.-+.+|||+
T Consensus 218 ~yLGRpW~~~a~vVf~~t~l~ 238 (317)
T PLN02773 218 MYLGRPWGPFGRVVFAYTYMD 238 (317)
T ss_pred eeecCCCCCCceEEEEecccC
Confidence 4555542 678889999886
No 31
>PLN02432 putative pectinesterase
Probab=95.27 E-value=2 Score=42.80 Aligned_cols=192 Identities=17% Similarity=0.233 Sum_probs=101.3
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ec---cEEEecCC--
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HG---GTLRASDD-- 166 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gd---GtI~A~~~-- 166 (379)
+||..| =.-||+|++++-... ..+.+|+|.+|+|. ..|.+|-. +.++++ ++ .|+.--.+
T Consensus 17 ~~Gsg~-f~TIq~Aida~p~~~-----------~~~~~I~I~~G~Y~--E~V~ip~~-k~~itl~G~~~~~TvI~~~~~~ 81 (293)
T PLN02432 17 QSGKGD-FRKIQDAIDAVPSNN-----------SQLVFIWVKPGIYR--EKVVVPAD-KPFITLSGTQASNTIITWNDGG 81 (293)
T ss_pred CCCCCC-ccCHHHHHhhccccC-----------CceEEEEEeCceeE--EEEEEecc-CceEEEEEcCCCCeEEEecCCc
Confidence 344443 667999999883211 13678999999996 46777531 345544 44 23321110
Q ss_pred --CCCCeEEEEecCCCCCCCCCccccceeEEEEecccccCC--ceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEec
Q 041981 167 --FPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGA--ISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRN 241 (379)
Q Consensus 167 --f~gd~~lI~g~~~~~~~~~~~~~i~lrnl~~D~n~~~~g--i~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~n 241 (379)
+......+ ......++||+|.++.-..+ +.+ +++.+..+.||.|.+. -|=+... ...-+..+
T Consensus 82 ~~~~saT~~v-----------~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~-QDTLy~~-~gr~yf~~ 148 (293)
T PLN02432 82 DIFESPTLSV-----------LASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSY-QDTLLDD-TGRHYYRN 148 (293)
T ss_pred ccccceEEEE-----------ECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecc-cceeEEC-CCCEEEEe
Confidence 11101111 12345678888887653222 222 3355677889999986 3333222 23458899
Q ss_pred ceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec--ceeEEEcccc----eeeeeeEEecCceeeeeeeeEEe
Q 041981 242 SFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA--AVGIMVSGQA----NTFSGVHCYNKATGFGGTGIYLK 314 (379)
Q Consensus 242 s~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g--~~G~~v~gqq----n~i~~i~~~n~~Tg~~G~GI~~~ 314 (379)
|.|..... .|=|+.. ..-+|.|..- ..|.+. .|. ..-.+.-|.+|.---.| -.+|=
T Consensus 149 c~I~G~VD---------------FIFG~g~a~Fe~c~i~s~~~~~g~it-A~~r~~~~~~~Gfvf~~c~itg~g-~~yLG 211 (293)
T PLN02432 149 CYIEGATD---------------FICGNAASLFEKCHLHSLSPNNGAIT-AQQRTSASENTGFTFLGCKLTGAG-TTYLG 211 (293)
T ss_pred CEEEeccc---------------EEecCceEEEEeeEEEEecCCCCeEE-ecCCCCCCCCceEEEEeeEEcccc-hhhcc
Confidence 98887653 2234433 6667776532 224332 110 11124444444321011 24455
Q ss_pred ccc--ccceeEecceec
Q 041981 315 LPG--NTQTRIVNSYMD 329 (379)
Q Consensus 315 ~~g--~~~~~I~nCyld 329 (379)
|+= .++.-+.+|||+
T Consensus 212 RpW~~~srvvf~~t~l~ 228 (293)
T PLN02432 212 RPWGPYSRVVFALSYMS 228 (293)
T ss_pred CCCCCccEEEEEecccC
Confidence 442 678889999875
No 32
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=95.19 E-value=1.5 Score=43.67 Aligned_cols=129 Identities=19% Similarity=0.347 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEc---cEEEecC-CCCCCeEE
Q 041981 99 STEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHG---GTLRASD-DFPTDGYL 173 (379)
Q Consensus 99 dT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igd---GtI~A~~-~f~gd~~l 173 (379)
|=.-||+||+++-... ..+.+|+|.||+|. ..|.++.. +.+++ +++ .|+.... +.. +..
T Consensus 11 df~TIq~Aida~p~~~-----------~~~~~I~I~~G~Y~--E~V~i~~~-k~~v~l~G~~~~~tiI~~~~~~~-~~~- 74 (298)
T PF01095_consen 11 DFTTIQAAIDAAPDNN-----------TSRYTIFIKPGTYR--EKVTIPRS-KPNVTLIGEGRDKTIITGNDNAA-DGG- 74 (298)
T ss_dssp SBSSHHHHHHHS-SSS-----------SS-EEEEE-SEEEE----EEE-ST-STTEEEEES-TTTEEEEE---TT-TB--
T ss_pred CccCHHHHHHhchhcC-----------CceEEEEEeCeeEc--cccEeccc-cceEEEEecCCCceEEEEecccc-ccc-
Confidence 4566999999983211 12578999999998 46888742 24554 454 2322211 110 000
Q ss_pred EEecCCCCC-CCCCccccceeEEEEeccccc---CCce-EEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeec
Q 041981 174 IDLSASKSS-SSYNYEYITLEDLMFDSNYRG---GAIS-VINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHI 248 (379)
Q Consensus 174 I~g~~~~~~-~~~~~~~i~lrnl~~D~n~~~---~gi~-~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~ 248 (379)
....+. .........++||+|-++.-. ..+. .+.+.+..+.||.|... -|=+... +..-+..+|.|....
T Consensus 75 ---~t~~saT~~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~-QDTL~~~-~~r~y~~~c~IeG~v 149 (298)
T PF01095_consen 75 ---GTFRSATFSVNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGY-QDTLYAN-GGRQYFKNCYIEGNV 149 (298)
T ss_dssp ---HCGGC-SEEE-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-S-TT-EEE--SSEEEEES-EEEESE
T ss_pred ---cccccccccccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccc-cceeeec-cceeEEEeeEEEecC
Confidence 000000 011124556788988764321 2222 24566788899999987 4444443 356788999988764
No 33
>PLN02480 Probable pectinesterase
Probab=95.18 E-value=3.1 Score=42.33 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEec
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLP 147 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~ 147 (379)
.||. .|=.-||+|+++|-... ....+|+|.+|+|. ..|.++
T Consensus 54 ~~G~-g~f~TIQ~AIdaap~~~-----------~~~~~I~Ik~GvY~--E~V~I~ 94 (343)
T PLN02480 54 INGK-GDFTSVQSAIDAVPVGN-----------SEWIIVHLRKGVYR--EKVHIP 94 (343)
T ss_pred CCCC-CCcccHHHHHhhCccCC-----------CceEEEEEcCcEEE--EEEEEC
Confidence 3554 45778999999983211 12567999999997 478876
No 34
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.91 E-value=1.5 Score=46.93 Aligned_cols=199 Identities=18% Similarity=0.263 Sum_probs=103.5
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEecCCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRASDDFP 168 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A~~~f~ 168 (379)
+||..| -.-||+|++++.... .....+|||.+|+|. ..|.++.. +.+++ +|+| |+..-+...
T Consensus 231 ~dGsG~-f~TIq~AI~a~~~~~----------~~~r~vI~Ik~GvY~--E~V~I~~~-k~nItl~G~g~~~TiIt~~~~~ 296 (529)
T PLN02170 231 ADGSGT-HKTIGEALLSTSLES----------GGGRTVIYLKAGTYH--ENLNIPTK-QKNVMLVGDGKGKTVIVGSRSN 296 (529)
T ss_pred CCCCCc-hhhHHHHHHhccccc----------CCceEEEEEeCCeeE--EEEecCCC-CceEEEEEcCCCCeEEEeCCcC
Confidence 455444 678999999763111 113679999999998 35777632 34565 4653 443221111
Q ss_pred CCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecc
Q 041981 169 TDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNS 242 (379)
Q Consensus 169 gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns 242 (379)
.+ +++.. +. ..........+||+|-++.-.. .+.+ +++.+..+.||.|.+. -|=+..+. ..-+.++|
T Consensus 297 ~~-----g~~T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~Gy-QDTLy~~~-~Rqyy~~C 369 (529)
T PLN02170 297 RG-----GWTTYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGY-QDSLYTHS-KRQFYRET 369 (529)
T ss_pred CC-----CCccccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEecc-CCcceeCC-CCEEEEee
Confidence 11 11100 00 0001123456788887764322 2222 3355677889999986 33333332 34588999
Q ss_pred eeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec----ceeEEEcccc----eeeeeeEEecCceeeeeeeeEE
Q 041981 243 FLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA----AVGIMVSGQA----NTFSGVHCYNKATGFGGTGIYL 313 (379)
Q Consensus 243 ~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g----~~G~~v~gqq----n~i~~i~~~n~~Tg~~G~GI~~ 313 (379)
.|...+. .|-|+.. +.-+|.|..- ..|. +..|. ..-.++-|.+|.---.+ -.++
T Consensus 370 ~I~GtVD---------------FIFG~a~avFq~C~I~~~~~~~~~g~-ITAq~R~~~~~~~Gfvf~~C~it~~~-~~yL 432 (529)
T PLN02170 370 DITGTVD---------------FIFGNSAVVFQSCNIAARKPSGDRNY-VTAQGRSDPNQNTGISIHNCRITAES-MTYL 432 (529)
T ss_pred EEccccc---------------eecccceEEEeccEEEEecCCCCceE-EEecCCCCCCCCceEEEEeeEEecCC-ceee
Confidence 8887653 2335544 5566666432 1232 33221 22235555555321111 2455
Q ss_pred eccc--ccceeEecceec
Q 041981 314 KLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 314 ~~~g--~~~~~I~nCyld 329 (379)
=|+= .+++-+.+|||+
T Consensus 433 GRPW~~ysrvVf~~t~l~ 450 (529)
T PLN02170 433 GRPWKEYSRTVVMQSFID 450 (529)
T ss_pred eCCCCCCceEEEEecccC
Confidence 5542 678888999885
No 35
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=94.74 E-value=2.1 Score=46.37 Aligned_cols=197 Identities=17% Similarity=0.225 Sum_probs=102.4
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCCC
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDFP 168 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f~ 168 (379)
||..| =.-||+|++++-... ....+|||.+|+|. ..|..+-+ +.+++ +|+| |+.. ..++.
T Consensus 265 dGsg~-f~tI~~Av~a~p~~~-----------~~~~vI~ik~GvY~--E~V~i~~~-k~~i~~~G~g~~~tiIt~~~~~~ 329 (565)
T PLN02468 265 DGSGK-YKTISEALKDVPEKS-----------EKRTIIYVKKGVYF--ENVRVEKK-KWNVVMVGDGMSKTIVSGSLNFV 329 (565)
T ss_pred CCCCC-ccCHHHHHHhchhcC-----------CCcEEEEEeCCceE--EEEEecCC-CCeEEEEecCCCCCEEEeCCccC
Confidence 44333 567999998873211 13679999999997 36777643 34554 4664 3322 11111
Q ss_pred CCeEEEEecCCC-C-CCCCCccccceeEEEEecccccCC---ceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecc
Q 041981 169 TDGYLIDLSASK-S-SSSYNYEYITLEDLMFDSNYRGGA---ISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNS 242 (379)
Q Consensus 169 gd~~lI~g~~~~-~-~~~~~~~~i~lrnl~~D~n~~~~g---i~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns 242 (379)
++.... + ...........+||.|.++.-..+ +.+ +.+.+..+.||.|.+. -|=+..+ +..-+.++|
T Consensus 330 ------dg~~t~~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~-QDTLy~~-~~rq~y~~C 401 (565)
T PLN02468 330 ------DGTPTFSTATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAF-QDTLYAH-AQRQFYREC 401 (565)
T ss_pred ------CCCCccceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEec-cchhccC-CCceEEEee
Confidence 111100 0 000112345578898877653322 222 3355677889999986 2323222 244578888
Q ss_pred eeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEccc----ceeeeeeEEecCceeeee----
Q 041981 243 FLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQ----ANTFSGVHCYNKATGFGG---- 308 (379)
Q Consensus 243 ~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gq----qn~i~~i~~~n~~Tg~~G---- 308 (379)
.|...+. +|-|+.. +.-+|.|..- ..|. ++.| .+.-.++-|.+|.---.+
T Consensus 402 ~I~GtvD---------------FIFG~a~avfq~c~i~~~~~~~~~~~~-iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~ 465 (565)
T PLN02468 402 NIYGTVD---------------FIFGNSAVVFQNCNILPRRPMKGQQNT-ITAQGRTDPNQNTGISIQNCTILPLGDLTS 465 (565)
T ss_pred EEecccc---------------eeeccceEEEeccEEEEecCCCCCCce-EEecCCCCCCCCceEEEEccEEecCCCccc
Confidence 8877653 2335544 5556665321 2232 3322 122335666666322111
Q ss_pred eeeEEeccc--ccceeEecceec
Q 041981 309 TGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 309 ~GI~~~~~g--~~~~~I~nCyld 329 (379)
.-.+|=|+= .+++-+.+|||+
T Consensus 466 ~~~yLGRPW~~~sr~v~~~s~~~ 488 (565)
T PLN02468 466 VKTFLGRPWKNYSTTVIMHSMMG 488 (565)
T ss_pred cceeeecCCCCCceEEEEecccC
Confidence 123454442 678888999874
No 36
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.66 E-value=2.4 Score=45.62 Aligned_cols=197 Identities=16% Similarity=0.258 Sum_probs=104.4
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDF 167 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f 167 (379)
.||..| =.-||+|++++-.. ..+..+|||.+|+|.= .|..+.. +.+++ +|+| |+.- ...+
T Consensus 238 ~dGsG~-f~TIq~Av~a~p~~-----------~~~r~vI~Vk~GvY~E--~V~I~~~-k~~i~l~G~g~~~tiIt~~~~~ 302 (537)
T PLN02506 238 LDGSGH-YRTITEAINEAPNH-----------SNRRYIIYVKKGVYKE--NIDMKKK-KTNIMLVGDGIGQTVVTGNRNF 302 (537)
T ss_pred CCCCCC-ccCHHHHHHhchhc-----------CCCcEEEEEeCCeeeE--EEeccCC-CceEEEEEcCCCCeEEEeCccc
Confidence 345433 66799999987321 1136799999999973 4666531 34554 4653 3322 1111
Q ss_pred CCCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEec
Q 041981 168 PTDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRN 241 (379)
Q Consensus 168 ~gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~n 241 (379)
.+++... +. ..........+||+|.++.-.. .+.+ +++.+..+.||.|.+. -|=+..+ +..-+.++
T Consensus 303 ------~~g~~T~~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~-QDTLy~~-~~rqyy~~ 374 (537)
T PLN02506 303 ------MQGWTTFRTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGY-QDTLYAH-SLRQFYRE 374 (537)
T ss_pred ------cCCCCcccceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecc-cccceec-CCceEEEe
Confidence 1111110 00 0011233456788888765322 2222 3355677889999886 2333322 24458899
Q ss_pred ceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEccc----ceeeeeeEEecCceeeeeeee
Q 041981 242 SFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQ----ANTFSGVHCYNKATGFGGTGI 311 (379)
Q Consensus 242 s~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gq----qn~i~~i~~~n~~Tg~~G~GI 311 (379)
|.|...+. +|-|+.. +.-+|.|..- ..| .++.| .+.-.++-|.+|.-- +-.-.
T Consensus 375 C~I~GtVD---------------FIFG~a~avfq~C~i~~r~~~~~~~~-~iTA~~r~~~~~~~G~vf~~c~i~-~~~~~ 437 (537)
T PLN02506 375 CEIYGTID---------------FIFGNGAAVLQNCKIYTRVPLPLQKV-TITAQGRKSPHQSTGFSIQDSYVL-ATQPT 437 (537)
T ss_pred eEEecccc---------------eEccCceeEEeccEEEEccCCCCCCc-eEEccCCCCCCCCcEEEEEcCEEc-cCCce
Confidence 98877543 2335544 6667766432 123 23333 122346777777421 11235
Q ss_pred EEeccc--ccceeEecceec
Q 041981 312 YLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 312 ~~~~~g--~~~~~I~nCyld 329 (379)
++=|+= .+++-+.+|||+
T Consensus 438 yLGRPW~~~sr~v~~~t~l~ 457 (537)
T PLN02506 438 YLGRPWKQYSRTVFMNTYMS 457 (537)
T ss_pred EEecCCCCCceEEEEecCCC
Confidence 565542 788889999874
No 37
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.60 E-value=1.6 Score=46.71 Aligned_cols=198 Identities=17% Similarity=0.251 Sum_probs=105.3
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDF 167 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f 167 (379)
.||.. |=.-||+|++++-.. ...+.+|||.+|+|. ..|.+|.. +.+++ +|+| |+.- ...+
T Consensus 212 ~dGsG-~f~TIq~Ai~a~P~~-----------~~~r~vI~Ik~GvY~--E~V~I~~~-k~~i~l~G~g~~~TiIt~~~~~ 276 (520)
T PLN02201 212 ADGTG-NFTTIMDAVLAAPDY-----------STKRYVIYIKKGVYL--ENVEIKKK-KWNIMMVGDGIDATVITGNRSF 276 (520)
T ss_pred CCCCC-CccCHHHHHHhchhc-----------CCCcEEEEEeCceeE--EEEEecCC-CceEEEEecCCCCcEEEeCCcc
Confidence 45543 467899999987321 113679999999998 36888742 34555 4653 3332 1111
Q ss_pred CCCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEec
Q 041981 168 PTDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRN 241 (379)
Q Consensus 168 ~gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~n 241 (379)
.++++.. +. ..........+||+|.++.-.. .+.+ +.+.+..+.||.|.+. -|=+..+. ..-+.++
T Consensus 277 ------~~g~~T~~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~-QDTLy~~~-~Rqyy~~ 348 (520)
T PLN02201 277 ------IDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGY-QDTLYTHT-MRQFYRE 348 (520)
T ss_pred ------CCCCcccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeecc-CCeeEeCC-CCEEEEe
Confidence 1111110 00 0001123446888888765322 2222 2355577789999986 33333332 3457889
Q ss_pred ceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEccc----ceeeeeeEEecCce-eeee--
Q 041981 242 SFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQ----ANTFSGVHCYNKAT-GFGG-- 308 (379)
Q Consensus 242 s~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gq----qn~i~~i~~~n~~T-g~~G-- 308 (379)
|.|...+. +|-|+.. ..-+|.|..- ..|.+ +.| .+.-.+.-|.+|.- +-.+
T Consensus 349 C~I~GtVD---------------FIFG~a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~C~it~~~~~~ 412 (520)
T PLN02201 349 CRITGTVD---------------FIFGDATAVFQNCQILAKKGLPNQKNTI-TAQGRKDPNQPTGFSIQFSNISADTDLL 412 (520)
T ss_pred eEEeeccc---------------EEecCceEEEEccEEEEecCCCCCCceE-EecCCCCCCCCcEEEEEeeEEecCcccc
Confidence 98888653 2345544 6667776431 12332 222 12223555555531 1111
Q ss_pred -----eeeEEeccc--ccceeEecceec
Q 041981 309 -----TGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 309 -----~GI~~~~~g--~~~~~I~nCyld 329 (379)
.-.||=|+= .+++-+.+|||+
T Consensus 413 ~~~~~~~~yLGRPW~~ysrvv~~~t~l~ 440 (520)
T PLN02201 413 PYLNTTATYLGRPWKLYSRTVFMQNYMS 440 (520)
T ss_pred ccccccceEeecCCCCCceEEEEecCcC
Confidence 135565553 788999999885
No 38
>PLN02916 pectinesterase family protein
Probab=94.50 E-value=3.6 Score=43.91 Aligned_cols=201 Identities=18% Similarity=0.272 Sum_probs=102.8
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDF 167 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f 167 (379)
.||.. |=.-||+|++++-... ..+....+|||.+|+|. ..|..|.. +.+++ +|+| |+.- ....
T Consensus 193 ~dGsG-~f~TIq~AI~a~P~~~--------~~~~~r~vI~Ik~GvY~--E~V~I~~~-k~~i~l~G~g~~~TiIt~~~~~ 260 (502)
T PLN02916 193 RDGSG-THRTINQALAALSRMG--------KSRTNRVIIYVKAGVYN--EKVEIDRH-MKNVMFVGDGMDKTIITNNRNV 260 (502)
T ss_pred CCCCC-CccCHHHHHHhccccc--------CCCCceEEEEEeCceee--EEEEecCC-CceEEEEecCCCCcEEEeCCcc
Confidence 34443 3667999999873210 01123679999999997 35777632 23554 4654 3332 1111
Q ss_pred CCCeEEEEecCCC-C-CCCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEec
Q 041981 168 PTDGYLIDLSASK-S-SSSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRN 241 (379)
Q Consensus 168 ~gd~~lI~g~~~~-~-~~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~n 241 (379)
. ++.... + ...........+||+|.++.-.. .+.+ +++.+..+.||.|.+. -|=+..+. ..-+.++
T Consensus 261 ~------~g~~T~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~-QDTLy~~~-~Rqyy~~ 332 (502)
T PLN02916 261 P------DGSTTYSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGY-QDTLFVHS-LRQFYRD 332 (502)
T ss_pred C------CCCcceeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecc-CceeEeCC-CCEEEEe
Confidence 1 110000 0 00001123456888888765322 2222 2355677889999986 23333332 3458899
Q ss_pred ceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEccc----ceeeeeeEEecCce-ee----
Q 041981 242 SFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQ----ANTFSGVHCYNKAT-GF---- 306 (379)
Q Consensus 242 s~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gq----qn~i~~i~~~n~~T-g~---- 306 (379)
|.|...+. +|-|+.. ..-+|.|..- ..| .+..| ...-.++-|.+|.- +-
T Consensus 333 C~I~GtVD---------------FIFG~a~avFq~C~I~~~~~~~~~~g-~ITAq~r~~~~~~tGfvf~~C~it~~~~~~ 396 (502)
T PLN02916 333 CHIYGTID---------------FIFGDAAVVFQNCDIFVRRPMDHQGN-MITAQGRDDPHENTGISIQHSRVRASPEFE 396 (502)
T ss_pred cEEecccc---------------eeccCceEEEecCEEEEecCCCCCcc-eEEecCCCCCCCCcEEEEEeeEEecCcccc
Confidence 98887653 2335543 5556665331 123 23322 12223555555532 11
Q ss_pred --ee-eeeEEeccc--ccceeEecceec
Q 041981 307 --GG-TGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 307 --~G-~GI~~~~~g--~~~~~I~nCyld 329 (379)
.| .-.+|=|+= .+++-+.+|||+
T Consensus 397 ~~~g~~~~yLGRPW~~ysrvVf~~t~~~ 424 (502)
T PLN02916 397 AVKGRFKSFLGRPWKKYSRTVFLKTDLD 424 (502)
T ss_pred ccccccceEeecCCCCCceEEEEecccC
Confidence 01 124555543 788999999875
No 39
>PLN02176 putative pectinesterase
Probab=94.32 E-value=6.4 Score=40.07 Aligned_cols=192 Identities=14% Similarity=0.204 Sum_probs=102.6
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ecc---EEEecCCC
Q 041981 92 DPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HGG---TLRASDDF 167 (379)
Q Consensus 92 ~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gdG---tI~A~~~f 167 (379)
.+||..| =.-||+|++++-... ....+|+|.+|+|. ..|..+.+ +.++++ |+| |+..-.+-
T Consensus 44 a~dGsGd-f~TIq~AIdavP~~~-----------~~~~~I~Ik~GvY~--EkV~Ip~~-k~~vtl~G~g~~~TiIt~~~~ 108 (340)
T PLN02176 44 NPNDARY-FKTVQSAIDSIPLQN-----------QNWIRILIQNGIYR--EKVTIPKE-KGYIYMQGKGIEKTIIAYGDH 108 (340)
T ss_pred CCCCCCC-ccCHHHHHhhchhcC-----------CceEEEEECCcEEE--EEEEECCC-CccEEEEEcCCCceEEEEeCC
Confidence 3455444 778999999873211 12568999999998 36887632 345654 553 44321110
Q ss_pred CC---C-eEEEEecCCCCCCCCCccccceeEEEEeccccc---------CCce-EEcccceEEeeEEEEeecCCceeEee
Q 041981 168 PT---D-GYLIDLSASKSSSSYNYEYITLEDLMFDSNYRG---------GAIS-VINSLRTSIDNCYIARFTSNGILVQS 233 (379)
Q Consensus 168 ~g---d-~~lI~g~~~~~~~~~~~~~i~lrnl~~D~n~~~---------~gi~-~~nSq~~~I~N~~i~~~ntdGIhi~~ 233 (379)
.. . ...+ .......+||+|.++.-. ..+. .+.+.+..+.||.|.+. -|=+.. .
T Consensus 109 ~~t~~saT~~v-----------~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~-QDTLy~-~ 175 (340)
T PLN02176 109 QATDTSATFTS-----------YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGF-QDTLFD-G 175 (340)
T ss_pred cccccceEEEE-----------ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecc-cceeEe-C
Confidence 00 0 0111 123445778888765421 1111 23355677889999985 232322 2
Q ss_pred eeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec--------ceeEEEcccc----eeeeeeEEe
Q 041981 234 GHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA--------AVGIMVSGQA----NTFSGVHCY 300 (379)
Q Consensus 234 s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g--------~~G~~v~gqq----n~i~~i~~~ 300 (379)
...-+.++|.|..... .|-|+.. ..-+|.|..- ..|.+. .|. ..-.+.-|.
T Consensus 176 ~gRqyf~~CyIeG~VD---------------FIFG~a~a~Fe~C~I~s~~~~~~~~~~~g~IT-A~~r~~~~~~~GfvF~ 239 (340)
T PLN02176 176 KGRHYYKRCVISGGID---------------FIFGYAQSIFEGCTLKLTLGIYPPNEPYGTIT-AQGRPSPSDKGGFVFK 239 (340)
T ss_pred CcCEEEEecEEEeccc---------------EEecCceEEEeccEEEEecccCCCCCCcEEEE-eCCCCCCCCCcEEEEE
Confidence 3446888998888653 2335544 5667776531 123332 211 111345555
Q ss_pred cCceeeeeee-eEEeccc--ccceeEecceec
Q 041981 301 NKATGFGGTG-IYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 301 n~~Tg~~G~G-I~~~~~g--~~~~~I~nCyld 329 (379)
+|.-- |.| .+|=|+= .++.-+.+|||+
T Consensus 240 ~C~it--g~g~~yLGRPW~~yarvVf~~t~m~ 269 (340)
T PLN02176 240 DCTVT--GVGKALLGRAWGSYARVIFYRSRFS 269 (340)
T ss_pred CCEEc--cCcceeeecCCCCCceEEEEecCcC
Confidence 55421 222 3454443 678888999875
No 40
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=94.25 E-value=4.8 Score=43.49 Aligned_cols=199 Identities=14% Similarity=0.202 Sum_probs=103.4
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEecC-CCC
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRASD-DFP 168 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A~~-~f~ 168 (379)
||.. |=.-||+|++++-... ..+..+|||.+|+|.= .|..+-. +.+++ +|+| |+..-+ ++.
T Consensus 248 dGsg-~f~TIq~Av~a~p~~~----------~~~r~vI~vk~GvY~E--~V~i~~~-k~~v~l~G~g~~~TiIt~~~~~~ 313 (553)
T PLN02708 248 DGNC-CYKTVQEAVNAAPDNN----------GDRKFVIRIKEGVYEE--TVRVPLE-KKNVVFLGDGMGKTVITGSLNVG 313 (553)
T ss_pred CCCC-CccCHHHHHHhhhhcc----------CCccEEEEEeCceEEe--eeeecCC-CccEEEEecCCCceEEEecCccC
Confidence 4443 3667999999883210 1135799999999983 5777632 34555 4664 333211 111
Q ss_pred CCeEEEEecCCC-C-CCCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecc
Q 041981 169 TDGYLIDLSASK-S-SSSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNS 242 (379)
Q Consensus 169 gd~~lI~g~~~~-~-~~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns 242 (379)
.++ ++.. + ...........+||+|.++.-.. .+.+ +.+.+..+.||.|.+. -|=...+ +..-+.++|
T Consensus 314 ~~g-----~~T~~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~-QDTLy~~-~~rq~y~~C 386 (553)
T PLN02708 314 QPG-----ISTYNTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGN-QDTLYAH-SLRQFYKSC 386 (553)
T ss_pred CCC-----cCccceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeec-cccceeC-CCceEEEee
Confidence 011 0000 0 00001124457888888765322 2222 2355677889999986 3333333 344588889
Q ss_pred eeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEe---------cceeEEEccc----ceeeeeeEEecCcee-ee
Q 041981 243 FLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFS---------AAVGIMVSGQ----ANTFSGVHCYNKATG-FG 307 (379)
Q Consensus 243 ~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~---------g~~G~~v~gq----qn~i~~i~~~n~~Tg-~~ 307 (379)
.|...+. +|-|+.. +.-+|.|.. +..|.+ ..| .+.-.++-|.+|.-- -.
T Consensus 387 ~I~GtVD---------------FIFG~a~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~C~it~~~ 450 (553)
T PLN02708 387 RIQGNVD---------------FIFGNSAAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQSTGFVFQNCLINGTE 450 (553)
T ss_pred EEeecCC---------------EEecCceEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCCCceEEEEccEEecCC
Confidence 8877653 2335544 555666642 122322 222 122235666666421 00
Q ss_pred -----------eeeeEEeccc--ccceeEecceec
Q 041981 308 -----------GTGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 308 -----------G~GI~~~~~g--~~~~~I~nCyld 329 (379)
-.-.++=|+= .+++-+.+|||+
T Consensus 451 ~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~ 485 (553)
T PLN02708 451 EYMKLYRSNPKVHKNFLGRPWKEYSRTVFIGCNLE 485 (553)
T ss_pred cccccccccccccceeeecCCCCcceEEEEecccC
Confidence 1124555542 678888999874
No 41
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=94.25 E-value=3.7 Score=42.96 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecC
Q 041981 99 STEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPD 148 (379)
Q Consensus 99 dT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~g 148 (379)
+.++||+|++.|-. +-+|+|+.|+|. ...|.|.+
T Consensus 3 s~~~lq~Ai~~a~p---------------GD~I~L~~Gty~-~~~i~~~~ 36 (425)
T PF14592_consen 3 SVAELQSAIDNAKP---------------GDTIVLADGTYK-DVEIVFKG 36 (425)
T ss_dssp SHHHHHHHHHH--T---------------T-EEEE-SEEEE-T-EEEE-S
T ss_pred CHHHHHHHHHhCCC---------------CCEEEECCceee-cceEEEEe
Confidence 47899999998831 568999999998 44688876
No 42
>PLN02314 pectinesterase
Probab=94.13 E-value=3.9 Score=44.46 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---E-EEecCCCCCCeEE
Q 041981 99 STEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---T-LRASDDFPTDGYL 173 (379)
Q Consensus 99 dT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---t-I~A~~~f~gd~~l 173 (379)
|=.-||+|++++-... ....+|||-+|+|. ..|..+-. +.+++ +|+| | |....++.
T Consensus 289 ~f~TI~~Av~a~p~~~-----------~~r~vI~ik~G~Y~--E~V~i~~~-k~~i~l~G~g~~~tiIt~~~~~~----- 349 (586)
T PLN02314 289 DVKTINEAVASIPKKS-----------KSRFVIYVKEGTYV--ENVLLDKS-KWNVMIYGDGKDKTIISGSLNFV----- 349 (586)
T ss_pred CccCHHHHHhhccccC-----------CceEEEEEcCceEE--EEEEecCC-CceEEEEecCCCCcEEEecCCcC-----
Confidence 3566999999873211 13679999999998 36777632 34555 4664 3 22222221
Q ss_pred EEecCCC-CC-CCCCccccceeEEEEecccccCC---ceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeee
Q 041981 174 IDLSASK-SS-SSYNYEYITLEDLMFDSNYRGGA---ISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQH 247 (379)
Q Consensus 174 I~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~g---i~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~ 247 (379)
++.... +. ..........+||.|.++.-..+ +.+ +++.+..+.||.|.+. -|=+..+. ..-+.++|.|...
T Consensus 350 -~g~~t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~-QDTLy~~~-~rq~y~~C~I~Gt 426 (586)
T PLN02314 350 -DGTPTFSTATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAF-QDTLYAHS-NRQFYRDCDITGT 426 (586)
T ss_pred -CCCCccceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEec-cchheeCC-CCEEEEeeEEEec
Confidence 110000 00 00011234568888887643222 222 2355567789999986 23232222 3458888988776
Q ss_pred cccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEccc----ceeeeeeEEecCceeeee---eeeEEe
Q 041981 248 ITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQ----ANTFSGVHCYNKATGFGG---TGIYLK 314 (379)
Q Consensus 248 ~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gq----qn~i~~i~~~n~~Tg~~G---~GI~~~ 314 (379)
+. +|-|+.. +.-+|.|..- ..| .++.| .+.-.++-|.+|.-.-.+ ...||=
T Consensus 427 vD---------------FIFG~a~avf~~c~i~~~~~~~~~~~-~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~yLG 490 (586)
T PLN02314 427 ID---------------FIFGNAAVVFQNCNIQPRQPLPNQFN-TITAQGKKDPNQNTGISIQRCTISAFGNLTAPTYLG 490 (586)
T ss_pred cc---------------eeccCceeeeeccEEEEecCCCCCCc-eEecCCCCCCCCCCEEEEEeeEEecCCccccccccc
Confidence 53 3345544 6667776431 123 23333 122346666666421111 123444
Q ss_pred cc-c-ccceeEecceec
Q 041981 315 LP-G-NTQTRIVNSYMD 329 (379)
Q Consensus 315 ~~-g-~~~~~I~nCyld 329 (379)
|+ . .+++-+.+|||+
T Consensus 491 RpW~~ysr~v~~~s~i~ 507 (586)
T PLN02314 491 RPWKDFSTTVIMQSYIG 507 (586)
T ss_pred CCCCCCceEEEEecccC
Confidence 43 2 678889999885
No 43
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=94.12 E-value=5.1 Score=43.46 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG 159 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG 159 (379)
.||..| =.-||+|++++-.... ...+..+|||.+|+|. ..|..+.. +.+++ +|+|
T Consensus 256 ~dGsG~-f~TIq~Av~a~p~~~~--------~~~~~~vI~Ik~G~Y~--E~V~i~~~-k~~i~l~G~g 311 (566)
T PLN02713 256 QNGTGN-FTTINDAVAAAPNNTD--------GSNGYFVIYVTAGVYE--EYVSIPKN-KKYLMMIGDG 311 (566)
T ss_pred CCCCCC-CCCHHHHHHhhhcccC--------CCCceEEEEEcCcEEE--EEEEecCC-CceEEEEecC
Confidence 344433 6679999988732100 0113578999999998 36877632 34554 4664
No 44
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=93.70 E-value=4.1 Score=44.96 Aligned_cols=197 Identities=16% Similarity=0.238 Sum_probs=103.8
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCCC
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDFP 168 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f~ 168 (379)
||.. |=.-||+|++++-... ....+|||-+|+|.= .|.++.+ +.+++ +|+| |+.- ...+.
T Consensus 257 dGsG-~f~TIq~Av~a~P~~~-----------~~r~vI~Ik~GvY~E--~V~I~~~-k~~i~l~Gdg~~~TiIt~~~~~~ 321 (670)
T PLN02217 257 DGSG-QYKTINEALNFVPKKK-----------NTTFVVHIKAGIYKE--YVQVNRS-MTHLVFIGDGPDKTVISGSKSYK 321 (670)
T ss_pred CCCC-CccCHHHHHHhccccC-----------CceEEEEEeCCceEE--EEEEcCC-CCcEEEEecCCCCeEEEcCCccC
Confidence 4433 3667999999883211 136799999999973 5887743 34554 5664 3332 21111
Q ss_pred CCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecc
Q 041981 169 TDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNS 242 (379)
Q Consensus 169 gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns 242 (379)
++++.. +. ..........+||+|.++.-.. .+.+ +++.+..+.||.|.+. -|=+..+. ..-+.++|
T Consensus 322 ------dg~~T~~SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~-QDTLy~~~-~Rqyy~~C 393 (670)
T PLN02217 322 ------DGITTYKTATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGY-QDTLYAHS-HRQFYRDC 393 (670)
T ss_pred ------CCCCccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeec-cchhccCC-CcEEEEeC
Confidence 111100 00 0001123456888888765322 2222 3355677889999986 33333332 44589999
Q ss_pred eeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEcccc----eeeeeeEEecCceeee-----
Q 041981 243 FLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQA----NTFSGVHCYNKATGFG----- 307 (379)
Q Consensus 243 ~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gqq----n~i~~i~~~n~~Tg~~----- 307 (379)
.|...+. +|-|+.. ..-+|.|..- ..| .++.|. +.-.++-|.+|.-.=.
T Consensus 394 ~I~GtVD---------------FIFG~a~avfq~C~I~~r~~~~~~~~-~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~ 457 (670)
T PLN02217 394 TISGTID---------------FLFGDAAAVFQNCTLLVRKPLLNQAC-PITAHGRKDPRESTGFVLQGCTIVGEPDYLA 457 (670)
T ss_pred EEEEecc---------------EEecCceEEEEccEEEEccCCCCCce-eEecCCCCCCCCCceEEEEeeEEecCccccc
Confidence 9888653 2345544 5566766431 122 233331 1223555555532111
Q ss_pred --e-eeeEEeccc--ccceeEecceec
Q 041981 308 --G-TGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 308 --G-~GI~~~~~g--~~~~~I~nCyld 329 (379)
+ .-.||=|+= ++++-+.+|||+
T Consensus 458 ~~~~~~~yLGRPW~~ysrvVf~~t~l~ 484 (670)
T PLN02217 458 VKETSKAYLGRPWKEYSRTIIMNTFIP 484 (670)
T ss_pred cccccceeeccCCCCCceEEEEecccC
Confidence 0 123454432 788999999885
No 45
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.56 E-value=7 Score=42.06 Aligned_cols=199 Identities=19% Similarity=0.266 Sum_probs=104.4
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEecCCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRASDDFP 168 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A~~~f~ 168 (379)
.||.. |=.-||+|++++-.. .....+|||-+|+|. ..|.+|.. +.+++ +|+| |+.-.+..
T Consensus 224 ~dGsG-~f~TIq~Ai~a~P~~-----------~~~r~vI~Ik~GvY~--E~V~I~~~-k~~itl~G~g~~~TiIt~~~~- 287 (530)
T PLN02933 224 IDGTG-NFTTINEAVSAAPNS-----------SETRFIIYIKGGEYF--ENVELPKK-KTMIMFIGDGIGKTVIKANRS- 287 (530)
T ss_pred CCCCC-CccCHHHHHHhchhc-----------CCCcEEEEEcCceEE--EEEEecCC-CceEEEEEcCCCCcEEEeCCc-
Confidence 45543 366799999987321 113679999999998 36888742 34554 4653 33221111
Q ss_pred CCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecc
Q 041981 169 TDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNS 242 (379)
Q Consensus 169 gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns 242 (379)
..++++.. +. ..........+||+|.++.-.. .+.+ +.+.+..+.||.|.+. -|=+..+. ..-+.++|
T Consensus 288 ----~~dg~~T~~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~-QDTLy~~~-~Rqyy~~C 361 (530)
T PLN02933 288 ----RIDGWSTFQTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGY-QDTLYVHS-AKQFYREC 361 (530)
T ss_pred ----cCCCCccccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEec-ccccccCC-CceEEEee
Confidence 11111110 00 0001123457888888765322 2222 2355577889999986 23333332 34589999
Q ss_pred eeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEccc----ceeeeeeEEecCce-eeee---
Q 041981 243 FLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQ----ANTFSGVHCYNKAT-GFGG--- 308 (379)
Q Consensus 243 ~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gq----qn~i~~i~~~n~~T-g~~G--- 308 (379)
.|...+. +|-|+.. ..-+|.|..- ..|.+ ..| .+.-.++-|.+|.- +-.+
T Consensus 362 ~IeGtVD---------------FIFG~a~avFq~C~i~~~~~~~~~~~~i-TAq~r~~~~~~tGfvf~~C~it~~~~~~~ 425 (530)
T PLN02933 362 DIYGTID---------------FIFGNAAVVFQNCSLYARKPNPNHKIAF-TAQSRNQSDQPTGISIISSRILAAPDLIP 425 (530)
T ss_pred EEecccc---------------eeccCceEEEeccEEEEeccCCCCceEE-EecCCCCCCCCceEEEEeeEEecCCcccc
Confidence 9888753 2335544 5566666332 22332 222 12223555555532 1111
Q ss_pred ----eeeEEeccc--ccceeEecceec
Q 041981 309 ----TGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 309 ----~GI~~~~~g--~~~~~I~nCyld 329 (379)
.-.+|=|+= .+++-+.+|||+
T Consensus 426 ~~~~~~~yLGRPW~~ysrvVf~~s~l~ 452 (530)
T PLN02933 426 VKENFKAYLGRPWRKYSRTVIIKSFID 452 (530)
T ss_pred cccccceEeccCCCCCceEEEEecccC
Confidence 124555542 788999999885
No 46
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.52 E-value=5.2 Score=43.23 Aligned_cols=198 Identities=20% Similarity=0.306 Sum_probs=102.1
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEE-ecCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLR-ASDDF 167 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~-A~~~f 167 (379)
.||.. |=.-||+|++++-.. . ....+|||-+|+|.= .|.++-. +.+++ +|+| |+. ...++
T Consensus 242 ~dGsG-~f~TIq~Ai~a~P~~---~--------~~r~vI~Ik~G~Y~E--~V~i~~~-k~~i~l~G~g~~~TiIt~~~~~ 306 (548)
T PLN02301 242 KDGSG-KYKTVKEAVASAPDN---S--------KTRYVIYVKKGTYKE--NVEIGKK-KKNLMLVGDGMDSTIITGSLNV 306 (548)
T ss_pred CCCCC-CcccHHHHHHhhhhc---C--------CceEEEEEeCceeeE--EEEecCC-CceEEEEecCCCCcEEEeCCcc
Confidence 34443 367799999988321 1 135799999999983 5877632 34554 4664 322 22111
Q ss_pred CCCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEec
Q 041981 168 PTDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRN 241 (379)
Q Consensus 168 ~gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~n 241 (379)
. ++.... +. ..........+||.|-++.-.. .+.+ +.+.+..+.||.|.+. -|=+..+. ..-+.++
T Consensus 307 ~------dg~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~-QDTLy~~~-~Rqyy~~ 378 (548)
T PLN02301 307 I------DGSTTFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAY-QDTLYAHS-LRQFYRD 378 (548)
T ss_pred C------CCCCceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeec-cccceecC-CcEEEEe
Confidence 1 111000 00 0001123446788887664322 2222 2355677889999986 23333322 3358889
Q ss_pred ceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEccc----ceeeeeeEEecCceeee----
Q 041981 242 SFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQ----ANTFSGVHCYNKATGFG---- 307 (379)
Q Consensus 242 s~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gq----qn~i~~i~~~n~~Tg~~---- 307 (379)
|.|...+. +|-|+.. +.-+|.|..- ..|. ++.| .+.-.++-|.+|.---.
T Consensus 379 C~I~GtVD---------------FIFG~a~avfq~c~i~~~~~~~~~~~~-iTAqgr~~~~~~tG~vf~~c~i~~~~~~~ 442 (548)
T PLN02301 379 SYITGTVD---------------FIFGNAAVVFQNCKIVARKPMAGQKNM-VTAQGRTDPNQNTGISIQKCDIIASSDLE 442 (548)
T ss_pred eEEEeccc---------------eecccceeEEeccEEEEecCCCCCCce-EEecCCCCCCCCCEEEEEeeEEecCcccc
Confidence 98887653 2335544 5556665331 1222 2222 12223566666642111
Q ss_pred ---ee-eeEEeccc--ccceeEecceec
Q 041981 308 ---GT-GIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 308 ---G~-GI~~~~~g--~~~~~I~nCyld 329 (379)
+. -.|+=|+= .+++-+.+|||+
T Consensus 443 ~~~~~~~~yLGRPW~~ysr~V~~~s~l~ 470 (548)
T PLN02301 443 PVKGSFKTYLGRPWKEYSRTVVMQSYID 470 (548)
T ss_pred ccccccceeeecCCCCCceEEEEecccC
Confidence 11 23555542 778888999874
No 47
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.48 E-value=5.3 Score=43.36 Aligned_cols=200 Identities=19% Similarity=0.265 Sum_probs=103.2
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDF 167 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f 167 (379)
.||.. |=.-||+|++++-.. .....+|||.+|+|.= .|..+.. +.+++ +|+| |+.. ..++
T Consensus 265 ~dGsG-~f~TIq~Av~a~p~~-----------~~~r~vI~Ik~GvY~E--~V~i~~~-k~~i~l~G~g~~~TiIt~~~~~ 329 (572)
T PLN02990 265 QDGSG-QYKTINEALNAVPKA-----------NQKPFVIYIKQGVYNE--KVDVTKK-MTHVTFIGDGPTKTKITGSLNF 329 (572)
T ss_pred CCCCC-CCcCHHHHHhhCccc-----------CCceEEEEEeCceeEE--EEEecCC-CCcEEEEecCCCceEEEecccc
Confidence 34443 356799999988321 1135799999999983 5777632 34555 4664 3222 2122
Q ss_pred CCCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEec
Q 041981 168 PTDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRN 241 (379)
Q Consensus 168 ~gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~n 241 (379)
.... ++.. +. ..........+||+|.++.-.. .+.+ +.+.+..+.||.|.+. -|=+..+. ..-+.++
T Consensus 330 ~~g~-----~~T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~-QDTLy~~~-~Rqyy~~ 402 (572)
T PLN02990 330 YIGK-----VKTYLTATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGY-QDTLYVHS-HRQFFRD 402 (572)
T ss_pred CCCC-----ccceeeeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecc-cchhccCC-CcEEEEe
Confidence 1100 0000 00 0001123457888887765321 1222 2355577789999986 23232222 3457889
Q ss_pred ceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecc--e--eEEEccc----ceeeeeeEEecCce-eee----
Q 041981 242 SFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAA--V--GIMVSGQ----ANTFSGVHCYNKAT-GFG---- 307 (379)
Q Consensus 242 s~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~--~--G~~v~gq----qn~i~~i~~~n~~T-g~~---- 307 (379)
|.|...+. +|-|+.. +.-+|.|..-. . .-.+..| .+.-.++-|.+|.- +-.
T Consensus 403 C~I~GtVD---------------FIFG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~ 467 (572)
T PLN02990 403 CTVSGTVD---------------FIFGDAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIP 467 (572)
T ss_pred eEEecccc---------------eEccCceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccc
Confidence 98877653 2345544 66677764311 1 1233322 11223566666642 111
Q ss_pred --e-eeeEEeccc--ccceeEecceec
Q 041981 308 --G-TGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 308 --G-~GI~~~~~g--~~~~~I~nCyld 329 (379)
+ .-.||=|+= .+++-+.+|||+
T Consensus 468 ~~~~~~~yLGRpW~~ysrvV~~~s~i~ 494 (572)
T PLN02990 468 VKSINKAYLGRPWKEFSRTIIMGTTID 494 (572)
T ss_pred cccccceEeecCCCCCceEEEEecccC
Confidence 0 113555542 788899999875
No 48
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=93.28 E-value=2.7 Score=45.27 Aligned_cols=198 Identities=19% Similarity=0.252 Sum_probs=100.8
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEecCCCCC
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRASDDFPT 169 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A~~~f~g 169 (379)
||.. |=.-||+|++++-... ....+|||.+|+|. ..|.++-. +.+++ +|+| |+.--....
T Consensus 237 dGsG-~f~TIq~Ai~a~p~~~-----------~~r~vI~Ik~GvY~--E~V~i~~~-k~~i~l~G~g~~~TiIt~~~~~- 300 (541)
T PLN02416 237 DGTG-NFSTITDAINFAPNNS-----------NDRIIIYVREGVYE--ENVEIPIY-KTNIVLIGDGSDVTFITGNRSV- 300 (541)
T ss_pred CCCC-CccCHHHHHHhhhhcC-----------CceEEEEEeCceeE--EEEecCCC-CccEEEEecCCCceEEeCCCcc-
Confidence 4433 3667999999873211 13578999999997 35776521 34555 4654 443321111
Q ss_pred CeEEEEecCCC-CC-CCCCccccceeEEEEecccccCC---ceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecce
Q 041981 170 DGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGGA---ISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNSF 243 (379)
Q Consensus 170 d~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~g---i~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~ 243 (379)
.++++.. +. ..........+||+|.++.-..+ +.+ +++.+..+.||.|.+. -|=+..+ +..-+.++|.
T Consensus 301 ----~~g~~T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~-QDTLy~~-~~Rqyy~~C~ 374 (541)
T PLN02416 301 ----VDGWTTFRSATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGY-QDTLYVH-SFRQFYRECD 374 (541)
T ss_pred ----CCCCCccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecc-cchhccC-CCceEEEeeE
Confidence 1111110 00 00011234567888876643322 222 3355577789999986 2323222 2445889998
Q ss_pred eeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEcccc----eeeeeeEEecCcee-ee-----
Q 041981 244 LGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQA----NTFSGVHCYNKATG-FG----- 307 (379)
Q Consensus 244 Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gqq----n~i~~i~~~n~~Tg-~~----- 307 (379)
|...+. .|-|+.. ..-+|.|..- ..| .+..|. +.-.++-|.+|.-- -.
T Consensus 375 I~GtVD---------------FIFG~a~avfq~c~i~~~~~~~~~~~-~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~ 438 (541)
T PLN02416 375 IYGTID---------------YIFGNAAVVFQACNIVSKMPMPGQFT-VITAQSRDTPDEDTGISIQNCSILATEDLYSN 438 (541)
T ss_pred Eeeccc---------------eeeccceEEEeccEEEEecCCCCCce-EEECCCCCCCCCCCEEEEEeeEEecCCccccc
Confidence 887653 2335544 5555665331 123 333321 12235566666421 11
Q ss_pred -ee-eeEEecc--cccceeEecceec
Q 041981 308 -GT-GIYLKLP--GNTQTRIVNSYMD 329 (379)
Q Consensus 308 -G~-GI~~~~~--g~~~~~I~nCyld 329 (379)
+. -.++=|+ -.+++-+.+|||+
T Consensus 439 ~~~~~~yLGRPW~~~sr~v~~~s~i~ 464 (541)
T PLN02416 439 SNSVKSYLGRPWRVYSRTVVLESYID 464 (541)
T ss_pred cccccccccCCCCCCccEEEEecccC
Confidence 01 1244443 2678889999764
No 49
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=93.24 E-value=6.4 Score=42.36 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=35.6
Q ss_pred eEEeeEEEEe---ecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCccEEEEEEEEecceeEEE--c
Q 041981 214 TSIDNCYIAR---FTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMV--S 288 (379)
Q Consensus 214 ~~I~N~~i~~---~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~~vsD~~i~~g~~G~~v--~ 288 (379)
.+|+|.+..+ ++||||.+..++ .|++||+-.. |..+ -|-.++-.|.|+++|...-|-++ +
T Consensus 358 ~~i~nyKqVGaW~~qtDGi~ly~nS--~i~dcF~h~n-----DD~i--------KlYhS~v~v~~~ViWk~~Ngpiiq~G 422 (582)
T PF03718_consen 358 MNISNYKQVGAWYFQTDGIELYPNS--TIRDCFIHVN-----DDAI--------KLYHSNVSVSNTVIWKNENGPIIQWG 422 (582)
T ss_dssp EEEEEEEEE---CTT----B--TT---EEEEEEEEES-----S-SE--------E--STTEEEEEEEEEE-SSS-SEE--
T ss_pred ceeeceeeeeeEEeccCCccccCCC--eeeeeEEEec-----Cchh--------heeecCcceeeeEEEecCCCCeEEee
Confidence 4556666665 399999997544 6789999886 3333 22333338999999985544222 2
Q ss_pred ccceeeeeeEEecC
Q 041981 289 GQANTFSGVHCYNK 302 (379)
Q Consensus 289 gqqn~i~~i~~~n~ 302 (379)
=---.+++|++.|+
T Consensus 423 W~pr~isnv~veni 436 (582)
T PF03718_consen 423 WTPRNISNVSVENI 436 (582)
T ss_dssp CS---EEEEEEEEE
T ss_pred ccccccCceEEeee
Confidence 11123556666554
No 50
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=93.10 E-value=4.5 Score=43.24 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=102.0
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEecCCCCC
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRASDDFPT 169 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A~~~f~g 169 (379)
||.. |=.-||+||+++-.. .....+|||-+|+|.= .|.++.. +.+++ +|+| |+..-..-..
T Consensus 204 dGsG-~f~TIq~AI~a~P~~-----------~~~r~vI~Ik~GvY~E--~V~I~~~-k~nItliGdg~~~TiIt~n~~~~ 268 (509)
T PLN02488 204 DGSG-KYNTVNAAIAAAPEH-----------SRKRFVIYIKTGVYDE--IVRIGST-KPNLTLIGDGQDSTIITGNLSAS 268 (509)
T ss_pred CCCC-CccCHHHHHHhchhc-----------CCCcEEEEEeCCeeEE--EEEecCC-CccEEEEecCCCceEEEEccccc
Confidence 4432 466799999988321 1136799999999983 5777631 34554 4653 3332111101
Q ss_pred CeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecce
Q 041981 170 DGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNSF 243 (379)
Q Consensus 170 d~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~ 243 (379)
+ ++... +. ..........+||+|.++.-+. .+.+ +.+.+..+.||.|.+. -|=... .+..-+.++|.
T Consensus 269 ~-----g~~T~~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~Gy-QDTLy~-~~~RqyyrdC~ 341 (509)
T PLN02488 269 N-----GKRTFYTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGY-QDALYP-HRDRQFYRECF 341 (509)
T ss_pred C-----CCCceeeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-Ccceee-CCCCEEEEeeE
Confidence 1 00000 00 0001123346788887665321 2222 2355577789999986 232322 23446888998
Q ss_pred eeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEcccc----eeeeeeEEecCceeeee-----
Q 041981 244 LGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQA----NTFSGVHCYNKATGFGG----- 308 (379)
Q Consensus 244 Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gqq----n~i~~i~~~n~~Tg~~G----- 308 (379)
|...+. +|-|+.. +.-+|.|..- ..| .++.|. +.-.++-|.+|.---.+
T Consensus 342 I~GtVD---------------FIFG~a~avFq~C~I~sr~~~~~~~~-~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~ 405 (509)
T PLN02488 342 ITGTVD---------------FICGNAAAVFQFCQIVARQPMMGQSN-VITAQSRESKDDNSGFSIQKCNITASSDLDPV 405 (509)
T ss_pred Eeeccc---------------eEecceEEEEEccEEEEecCCCCCCE-EEEeCCCCCCCCCcEEEEEeeEEecCCccccc
Confidence 887653 2335543 5566666431 223 333331 22335666666421111
Q ss_pred ---eeeEEeccc--ccceeEecceec
Q 041981 309 ---TGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 309 ---~GI~~~~~g--~~~~~I~nCyld 329 (379)
.-.+|=|+= .+++-+.+|||+
T Consensus 406 ~~~~~~YLGRPW~~ySrvVf~~s~i~ 431 (509)
T PLN02488 406 KATVKTYLGRPWRKYSTVAVLQSFIG 431 (509)
T ss_pred ccccceeecCCCCCCccEEEEeccCC
Confidence 123555442 788888999875
No 51
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=92.76 E-value=5.1 Score=43.63 Aligned_cols=198 Identities=18% Similarity=0.256 Sum_probs=104.8
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCCC
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDFP 168 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f~ 168 (379)
||..| =.-||+|++++-.. +....+|||-+|+|.= +.|..+.. +.+++ +|+| |+.- ..++.
T Consensus 279 dGsG~-f~TIq~Ai~a~P~~-----------~~~r~vI~Ik~G~Y~E-~~v~i~~~-k~ni~l~G~g~~~TiIt~~~~~~ 344 (587)
T PLN02484 279 DGNGT-FKTISEAIKKAPEH-----------SSRRTIIYVKAGRYEE-NNLKVGRK-KTNLMFIGDGKGKTVITGGKSIF 344 (587)
T ss_pred CCCCC-cccHHHHHHhcccc-----------CCCcEEEEEeCCEEEE-EEEEECCC-CceEEEEecCCCCeEEecCCccc
Confidence 44433 66799999988321 1136799999999974 13777632 34554 4653 3332 11110
Q ss_pred CCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecc
Q 041981 169 TDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNS 242 (379)
Q Consensus 169 gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns 242 (379)
+ +.+.. +. ..........+||+|.++.-.. .+.+ +.+.+..+.||.|.+. -|=+..+ +..-+.++|
T Consensus 345 -~-----~~~t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~-QDTLy~~-~~Rqyy~~C 416 (587)
T PLN02484 345 -D-----NLTTFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGY-QDTLYVH-SNRQFFREC 416 (587)
T ss_pred -C-----CCcccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEecc-CcccccC-CCcEEEEec
Confidence 1 00000 00 0001123456788887765322 2222 2355577789999986 2323222 234589999
Q ss_pred eeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEccc----ceeeeeeEEecCceeee-----
Q 041981 243 FLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQ----ANTFSGVHCYNKATGFG----- 307 (379)
Q Consensus 243 ~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gq----qn~i~~i~~~n~~Tg~~----- 307 (379)
.|...+. +|-|+.. ..-+|.|..- ..|. ++.| .+.-.++-|.+|.-.=.
T Consensus 417 ~I~GtVD---------------FIFG~a~avfq~C~i~~~~~~~~~~~~-ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~ 480 (587)
T PLN02484 417 DIYGTVD---------------FIFGNAAVVLQNCSIYARKPMAQQKNT-ITAQNRKDPNQNTGISIHACRILAASDLAA 480 (587)
T ss_pred EEEeccc---------------eecccceeEEeccEEEEecCCCCCceE-EEecCCCCCCCCcEEEEEeeEEecCCcccc
Confidence 9988653 2345544 6667776431 2233 3332 12334666666643111
Q ss_pred --eee-eEEeccc--ccceeEecceec
Q 041981 308 --GTG-IYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 308 --G~G-I~~~~~g--~~~~~I~nCyld 329 (379)
+.. .||=|+= .+++-+.+|||+
T Consensus 481 ~~~~~~~yLGRPW~~ysrvV~~~s~i~ 507 (587)
T PLN02484 481 SKGSFPTYLGRPWKLYSRTVYMMSYMG 507 (587)
T ss_pred ccCccceeccCCCCCCceEEEEecccC
Confidence 111 3555542 788999999885
No 52
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=92.73 E-value=8 Score=42.21 Aligned_cols=193 Identities=18% Similarity=0.226 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCCCCCeEE
Q 041981 99 STEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDFPTDGYL 173 (379)
Q Consensus 99 dT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f~gd~~l 173 (379)
|=.-||+|++++-.. .....+|||.+|+|.= .|..+.. +.+++ +|+| |+.- ..++. +
T Consensus 296 ~f~TIq~Ai~a~P~~-----------~~~r~vI~Ik~GvY~E--~V~I~~~-k~~i~l~G~g~~~TiIt~~~~~~-~--- 357 (596)
T PLN02745 296 NFTTISDALAAMPAK-----------YEGRYVIYVKQGIYDE--TVTVDKK-MVNVTMYGDGSQKTIVTGNKNFA-D--- 357 (596)
T ss_pred CcccHHHHHHhcccc-----------CCceEEEEEeCCeeEE--EEEEcCC-CceEEEEecCCCceEEEECCccc-C---
Confidence 467799999987321 1136799999999983 5777632 34554 4653 3332 22221 1
Q ss_pred EEecCCC-C-CCCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeee
Q 041981 174 IDLSASK-S-SSSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQH 247 (379)
Q Consensus 174 I~g~~~~-~-~~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~ 247 (379)
+++.. + ...........+||.|-++.... .+.+ +.+-+..+.||.|.+. -|=+..+. ..-+.++|.|...
T Consensus 358 --g~~T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~-QDTLy~~~-~Rqyy~~C~I~Gt 433 (596)
T PLN02745 358 --GVRTFRTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGY-QDTLYAQT-HRQFYRSCVITGT 433 (596)
T ss_pred --CCcceeeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeec-ccccccCC-CcEEEEeeEEEee
Confidence 10000 0 00001123456788887764322 1222 2355577889999986 23232222 3458899988876
Q ss_pred cccCCCCCccccceeeEEecCCcc-EEEEEEEEec-----ceeEEEcccc----eeeeeeEEecCcee-eee-------e
Q 041981 248 ITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-----AVGIMVSGQA----NTFSGVHCYNKATG-FGG-------T 309 (379)
Q Consensus 248 ~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-----~~G~~v~gqq----n~i~~i~~~n~~Tg-~~G-------~ 309 (379)
+. +|-|+.. ..-+|.|..- ..|. ++.|. +.-.++-|.+|.-- -.+ .
T Consensus 434 VD---------------FIFG~a~avf~~C~i~~~~~~~~~~~~-iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~ 497 (596)
T PLN02745 434 ID---------------FIFGDAAAIFQNCLIFVRKPLPNQQNT-VTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEV 497 (596)
T ss_pred cc---------------EEecceeEEEEecEEEEecCCCCCCce-EEecCCCCCCCCceEEEEeeEEecCcccccccccc
Confidence 53 2345544 5556665431 1232 33221 12235555555321 000 0
Q ss_pred eeEEeccc--ccceeEecceec
Q 041981 310 GIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 310 GI~~~~~g--~~~~~I~nCyld 329 (379)
-.||=|+= .+++-+.+|||+
T Consensus 498 ~~yLGRPW~~ysrvv~~~s~l~ 519 (596)
T PLN02745 498 KSYLGRPWKEFSRTIVMESTIE 519 (596)
T ss_pred ceeccCCCCCCccEEEEecccC
Confidence 13444432 778888899875
No 53
>PLN02497 probable pectinesterase
Probab=91.98 E-value=13 Score=37.81 Aligned_cols=193 Identities=17% Similarity=0.223 Sum_probs=98.6
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ecc---EEEecCCCCC
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HGG---TLRASDDFPT 169 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gdG---tI~A~~~f~g 169 (379)
||..| =.-+|+|++++-.. . ....+|+|=+|+|+ ..|.+|.. +.++++ |+| |+..-.+-.+
T Consensus 39 dGsGd-f~TIq~AIdavP~~---~--------~~~~~I~Ik~G~Y~--EkV~Ip~~-k~~itl~G~g~~~tiIt~~~~~~ 103 (331)
T PLN02497 39 SGHGN-FTTIQSAIDSVPSN---N--------KHWFCINVKAGLYR--EKVKIPYD-KPFIVLVGAGKRRTRIEWDDHDS 103 (331)
T ss_pred CCCCC-ccCHHHHHhhcccc---C--------CceEEEEEeCcEEE--EEEEecCC-CCcEEEEecCCCCceEEEecccc
Confidence 44433 66799999987321 1 12568999999997 36777631 334543 542 3222111000
Q ss_pred C--eEEEEecCCCCCCCCCccccceeEEEEeccccc----------CCce-EEcccceEEeeEEEEeecCCceeEeeeee
Q 041981 170 D--GYLIDLSASKSSSSYNYEYITLEDLMFDSNYRG----------GAIS-VINSLRTSIDNCYIARFTSNGILVQSGHE 236 (379)
Q Consensus 170 d--~~lI~g~~~~~~~~~~~~~i~lrnl~~D~n~~~----------~gi~-~~nSq~~~I~N~~i~~~ntdGIhi~~s~~ 236 (379)
. ...+. ........+||+|.++.-. ..+. .+++.+..+.||.|.+. -|=+.. ....
T Consensus 104 t~~SaT~~---------v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~-QDTLy~-~~gR 172 (331)
T PLN02497 104 TAQSPTFS---------TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGV-QDTLWD-SDGR 172 (331)
T ss_pred ccCceEEE---------EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecc-ccceee-CCCc
Confidence 0 00000 1123445778888765421 1111 23355677889999986 232322 2344
Q ss_pred EEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec-------ceeEEEcccc----eeeeeeEEecCce
Q 041981 237 TYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA-------AVGIMVSGQA----NTFSGVHCYNKAT 304 (379)
Q Consensus 237 v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g-------~~G~~v~gqq----n~i~~i~~~n~~T 304 (379)
-+.++|.|..... .|-|+.. ..-+|.|..- ..|. +..|. ..-.+.-|.+|.-
T Consensus 173 qyf~~C~IeG~VD---------------FIFG~g~a~Fe~C~I~s~~~~~~~~~~g~-ITA~~r~~~~~~~GfvF~~C~i 236 (331)
T PLN02497 173 HYFKRCTIQGAVD---------------FIFGSGQSIYESCVIQVLGGQLEPGLAGF-ITAQGRTNPYDANGFVFKNCLV 236 (331)
T ss_pred EEEEeCEEEeccc---------------EEccCceEEEEccEEEEecCcCCCCCceE-EEecCCCCCCCCceEEEEccEE
Confidence 5888998887653 2335544 5566666431 1133 22221 1122444555542
Q ss_pred eeeeeeeEEeccc--ccceeEecceec
Q 041981 305 GFGGTGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 305 g~~G~GI~~~~~g--~~~~~I~nCyld 329 (379)
-=.| -.+|=|+= .++.-+.+|||+
T Consensus 237 tg~g-~~yLGRPW~~ysrvvf~~t~m~ 262 (331)
T PLN02497 237 YGTG-SAYLGRPWRGYSRVLFYNSNLT 262 (331)
T ss_pred ccCC-CEEEeCCCCCCceEEEEecccC
Confidence 1112 23454443 678888999774
No 54
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=91.66 E-value=8 Score=41.72 Aligned_cols=201 Identities=18% Similarity=0.238 Sum_probs=103.6
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEecCCCCC
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRASDDFPT 169 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A~~~f~g 169 (379)
||.. |=.-||+|++++-... ....+..+|||.+|+|. ..|..+-. +.+++ +|+| |+.--+.
T Consensus 230 dGsG-~f~TI~~Av~a~p~~~--------~~~~~r~vI~vk~G~Y~--E~V~i~~~-k~~i~l~G~g~~~tiIt~~~--- 294 (538)
T PLN03043 230 YGTD-NFTTITDAIAAAPNNS--------KPEDGYFVIYAREGYYE--EYVVVPKN-KKNIMLIGDGINKTIITGNH--- 294 (538)
T ss_pred CCCC-CCcCHHHHHHhccccC--------CCCcceEEEEEcCeeeE--EEEEeCCC-CCcEEEEecCCCCeEEEeCC---
Confidence 4443 3667999998873210 00113569999999997 35777632 35665 4664 3332111
Q ss_pred CeEEEEecCCCC-C-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecce
Q 041981 170 DGYLIDLSASKS-S-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNSF 243 (379)
Q Consensus 170 d~~lI~g~~~~~-~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~ 243 (379)
...+++.... . ..........+||+|-++.-.. .+.+ +++.+..+.||.|.+. -|=+..+ +..-+.++|.
T Consensus 295 --~~~dg~~T~~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gy-QDTLy~~-~~rq~y~~c~ 370 (538)
T PLN03043 295 --SVVDGWTTFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGY-QDTLYVH-SLRQFYRECD 370 (538)
T ss_pred --ccCCCCccccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEecc-CcccccC-CCcEEEEeeE
Confidence 1112221110 0 0001133457888887664322 2222 2355577889999986 2323222 2445888998
Q ss_pred eeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEe-----cceeEEEccc----ceeeeeeEEecCceee-e-----
Q 041981 244 LGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFS-----AAVGIMVSGQ----ANTFSGVHCYNKATGF-G----- 307 (379)
Q Consensus 244 Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~-----g~~G~~v~gq----qn~i~~i~~~n~~Tg~-~----- 307 (379)
|...+. +|-|+.. +.-+|.|.. +..|.+ +.| .+.-.++-|.+|.--- .
T Consensus 371 I~GtVD---------------FIFG~a~avfq~c~i~~r~~~~~~~~~i-TA~~r~~~~~~tG~~~~~c~i~~~~~~~~~ 434 (538)
T PLN03043 371 IYGTVD---------------FIFGNAAAIFQNCNLYARKPMANQKNAF-TAQGRTDPNQNTGISIINCTIEAAPDLAMD 434 (538)
T ss_pred Eeeccc---------------eEeecceeeeeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEecEEecCCccccc
Confidence 887653 2345544 566666633 122332 222 1222356666664211 1
Q ss_pred --eeeeEEeccc--ccceeEecceec
Q 041981 308 --GTGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 308 --G~GI~~~~~g--~~~~~I~nCyld 329 (379)
..-.+|=|+= .+++-+.+|||+
T Consensus 435 ~~~~~~yLGRpW~~ysr~v~~~s~i~ 460 (538)
T PLN03043 435 PNSTMNFLGRPWKPYSRTVYMQSYIG 460 (538)
T ss_pred ccccceeccCCCCCCceEEEEecccC
Confidence 0123444442 788889999875
No 55
>PLN02671 pectinesterase
Probab=91.66 E-value=18 Score=37.21 Aligned_cols=202 Identities=16% Similarity=0.194 Sum_probs=99.1
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc-----EEEecCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG-----TLRASDD 166 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG-----tI~A~~~ 166 (379)
.||..| =.-+|+||+++-... ....+|+|-||+|. ..|..+.. +.+++ ++++ |+..-.+
T Consensus 65 ~dGsGd-f~TIQ~AIdavP~~~-----------~~~~~I~Ik~GvY~--EkV~I~~~-k~~Itl~G~g~~~~~TvIt~~~ 129 (359)
T PLN02671 65 KNGGGD-SLTVQGAVDMVPDYN-----------SQRVKIYILPGIYR--EKVLVPKS-KPYISFIGNESRAGDTVISWND 129 (359)
T ss_pred CCCCCC-ccCHHHHHHhchhcC-----------CccEEEEEeCceEE--EEEEECCC-CCeEEEEecCCCCCCEEEEcCC
Confidence 355444 667999999873211 13579999999997 35777631 34554 4542 3322111
Q ss_pred CCCCeEEEEec--CCC-CC-CCCCccccceeEEEEeccccc-------CCce-EEcccceEEeeEEEEeecCCceeEeee
Q 041981 167 FPTDGYLIDLS--ASK-SS-SSYNYEYITLEDLMFDSNYRG-------GAIS-VINSLRTSIDNCYIARFTSNGILVQSG 234 (379)
Q Consensus 167 f~gd~~lI~g~--~~~-~~-~~~~~~~i~lrnl~~D~n~~~-------~gi~-~~nSq~~~I~N~~i~~~ntdGIhi~~s 234 (379)
...+. --++. +.. +. ......+...+||+|.++... ..+. .+++.+..+.||.|.+. -|=+. ...
T Consensus 130 ~a~~~-~~~g~~~gT~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~-QDTLy-~~~ 206 (359)
T PLN02671 130 KASDL-DSNGFELGTYRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGA-QDTLL-DET 206 (359)
T ss_pred ccccc-ccCCccccceeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEecc-ccccE-eCC
Confidence 11000 00000 000 00 000112344678888766321 1111 13355677789999886 23222 223
Q ss_pred eeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEec--ceeEEEcccc----eeeeeeEEecCceeee
Q 041981 235 HETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSA--AVGIMVSGQA----NTFSGVHCYNKATGFG 307 (379)
Q Consensus 235 ~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g--~~G~~v~gqq----n~i~~i~~~n~~Tg~~ 307 (379)
..-+.++|.|..... .|=|+.. ..-+|.|..- ..|.+ ..|. ..-.+.-|.+|.-.=.
T Consensus 207 gR~yf~~CyIeG~VD---------------FIFG~g~A~Fe~C~I~s~~~~~G~I-TA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 207 GSHYFYQCYIQGSVD---------------FIFGNAKSLYQDCVIQSTAKRSGAI-AAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred CcEEEEecEEEEecc---------------EEecceeEEEeccEEEEecCCCeEE-EeeccCCCCCCccEEEEccEEccC
Confidence 445888998887653 2234433 5556666432 22432 2211 1223555555542101
Q ss_pred eeeeEEeccc--ccceeEecceec
Q 041981 308 GTGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 308 G~GI~~~~~g--~~~~~I~nCyld 329 (379)
| -.+|=|+= .++.-+.||||+
T Consensus 271 g-~vyLGRPW~~yarvVf~~t~m~ 293 (359)
T PLN02671 271 G-KIYLGRAWGNYSRTVYSNCFIA 293 (359)
T ss_pred c-cEEEeCCCCCCceEEEEecccC
Confidence 1 24454442 678888999774
No 56
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=91.53 E-value=8.2 Score=41.66 Aligned_cols=201 Identities=16% Similarity=0.252 Sum_probs=102.5
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEecCCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRASDDFP 168 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A~~~f~ 168 (379)
.||.. |=.-||+|++++-... .+.+..+|||-+|+|.= .|..|.. +.+++ +|+| |+.....-.
T Consensus 229 ~dGsG-~f~TIq~Ai~a~p~~~---------~~~~r~vI~Ik~G~Y~E--~V~i~~~-k~~i~l~G~g~~~TvIt~~~~~ 295 (539)
T PLN02995 229 KDGSG-HFNTVQAAIDVAGRRK---------VTSGRFVIYVKRGIYQE--NINVRLN-NDDIMLVGDGMRSTIITGGRSV 295 (539)
T ss_pred CCCCC-CccCHHHHHHhccccc---------CCCceEEEEEeCCEeEE--EEEecCC-CCcEEEEEcCCCCeEEEeCCcc
Confidence 34433 4667999999873110 01136799999999983 5777631 34565 4664 433211111
Q ss_pred CCeEEEEecCCC-CC-CCCCccccceeEEEEeccccc---CCceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecc
Q 041981 169 TDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRG---GAISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNS 242 (379)
Q Consensus 169 gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~---~gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns 242 (379)
.++ ++.. +. ..........+||+|.++.-. ..+.+ +.+.+..+.||.|.+. -|=+..+. ..-+.++|
T Consensus 296 ~~~-----~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~-QDTLy~~~-~Rqyy~~C 368 (539)
T PLN02995 296 KGG-----YTTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGY-QDTLMVHS-QRQFYREC 368 (539)
T ss_pred CCC-----CcccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecc-cchhccCC-CceEEEee
Confidence 110 1000 00 000112345678888776532 12222 2355577789999986 23222222 33488999
Q ss_pred eeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecc-----eeEEEcccc----eeeeeeEEecCce-eeee---
Q 041981 243 FLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAA-----VGIMVSGQA----NTFSGVHCYNKAT-GFGG--- 308 (379)
Q Consensus 243 ~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~-----~G~~v~gqq----n~i~~i~~~n~~T-g~~G--- 308 (379)
.|...+. +|-|+.. ..-+|.|..-. .| .++.|. +.-.++-|.+|.- +-.+
T Consensus 369 ~I~GtVD---------------FIFG~a~avf~~C~i~~~~~~~~~~~-~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~ 432 (539)
T PLN02995 369 YIYGTVD---------------FIFGNAAAVFQNCIILPRRPLKGQAN-VITAQGRADPFQNTGISIHNSRILPAPDLKP 432 (539)
T ss_pred EEeeccc---------------eEecccceEEeccEEEEecCCCCCcc-eEecCCCCCCCCCceEEEEeeEEecCCcccc
Confidence 8877643 2335544 56667664321 23 333331 2224555655531 1111
Q ss_pred ---e-eeEEeccc--ccceeEecceec
Q 041981 309 ---T-GIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 309 ---~-GI~~~~~g--~~~~~I~nCyld 329 (379)
. -.++=|+= .+++-+.+|||+
T Consensus 433 ~~~~~~~yLGRPW~~ysrvv~~~t~~~ 459 (539)
T PLN02995 433 VVRTVKTYMGRPWMKFSRTVVLQTYLD 459 (539)
T ss_pred cccccceeccCCCCCCcceEEEecccc
Confidence 1 13454442 678888899884
No 57
>PLN02197 pectinesterase
Probab=91.30 E-value=17 Score=39.79 Aligned_cols=200 Identities=18% Similarity=0.251 Sum_probs=102.8
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc---EEEe-cCCC
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG---TLRA-SDDF 167 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG---tI~A-~~~f 167 (379)
.||.. |=.-||+|++++-.. .....+|||-+|+|. ..|.++.. +.+++ +|+| |+.- ....
T Consensus 281 ~dGsG-~f~TIq~Ai~a~P~~-----------~~~r~vI~Ik~GvY~--E~V~I~~~-k~ni~l~G~g~~~TiIt~~~~~ 345 (588)
T PLN02197 281 KDGSG-QFKTISQAVMACPDK-----------NPGRCIIHIKAGIYN--EQVTIPKK-KNNIFMFGDGARKTVISYNRSV 345 (588)
T ss_pred CCCCC-CcCCHHHHHHhcccc-----------CCceEEEEEeCceEE--EEEEccCC-CceEEEEEcCCCCeEEEecccc
Confidence 34433 366799999988321 113568999999998 35777631 24554 4653 3332 1111
Q ss_pred CCCeEEEEecCCC-CC-CCCCccccceeEEEEecccccC---CceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEec
Q 041981 168 PTDGYLIDLSASK-SS-SSYNYEYITLEDLMFDSNYRGG---AISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRN 241 (379)
Q Consensus 168 ~gd~~lI~g~~~~-~~-~~~~~~~i~lrnl~~D~n~~~~---gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~n 241 (379)
.. .++.... +. ..........+||+|.++.-.. .+.+ +.+.+..+.||.|.++ -|=+..+. ..-+.++
T Consensus 346 ~~----~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~Gy-QDTLy~~~-~Rqyy~~ 419 (588)
T PLN02197 346 KL----SPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGY-QDTLYVNN-GRQFYRN 419 (588)
T ss_pred cc----CCCCcccceeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEec-CcceEecC-CCEEEEe
Confidence 00 0010000 00 0001223456788888765322 2222 2355577889999987 33333333 3458899
Q ss_pred ceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEe--c---ceeEEEcccc-----eeeeeeEEecCceeeee--
Q 041981 242 SFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFS--A---AVGIMVSGQA-----NTFSGVHCYNKATGFGG-- 308 (379)
Q Consensus 242 s~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~--g---~~G~~v~gqq-----n~i~~i~~~n~~Tg~~G-- 308 (379)
|.|...+. +|-|+.. ..-+|.|.. . ..|. ++.|. +.-.++-|.+|.--=.+
T Consensus 420 C~I~GtVD---------------FIFG~a~avfq~C~i~~r~~~~~~~~~-iTAqgr~~~~~~~tG~vf~~C~it~~~~~ 483 (588)
T PLN02197 420 IVVSGTVD---------------FIFGKSATVIQNSLIVVRKGSKGQYNT-VTADGNEKGLAMKIGIVLQNCRIVPDKKL 483 (588)
T ss_pred eEEEeccc---------------ccccceeeeeecCEEEEecCCCCCcee-EECCCCCCCCCCCcEEEEEccEEecCCcc
Confidence 99887653 2234433 455565532 1 1232 33331 22346666666421111
Q ss_pred ------eeeEEeccc--ccceeEecceec
Q 041981 309 ------TGIYLKLPG--NTQTRIVNSYMD 329 (379)
Q Consensus 309 ------~GI~~~~~g--~~~~~I~nCyld 329 (379)
.-.||=|+= .+++-+.+|||+
T Consensus 484 ~~~~~~~~~yLGRPW~~ysrvV~~~s~~~ 512 (588)
T PLN02197 484 TAERLTVASYLGRPWKKFSTTVIISTEIG 512 (588)
T ss_pred cccccccccccCCCCCCCceEEEEecccC
Confidence 113444442 788999999884
No 58
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=91.17 E-value=5.7 Score=35.92 Aligned_cols=117 Identities=23% Similarity=0.233 Sum_probs=63.6
Q ss_pred eEEeeEEEEeec------CCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCccEEEEEEEEecceeEEE
Q 041981 214 TSIDNCYIARFT------SNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMV 287 (379)
Q Consensus 214 ~~I~N~~i~~~n------tdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~~vsD~~i~~g~~G~~v 287 (379)
..|.|+.|.... ..||++..++.+.|+|+.+...- ..+.+-....+..+.+. .....+.+..+.
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~----~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~----- 163 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSG----GDGIYFNTGTDYRIIGS-THVSGIFIDNGS----- 163 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-S----S-SEEEECCEECEEECC-EEEEEEEEESCE-----
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccC----ccEEEEEccccCcEeec-ccceeeeeccce-----
Confidence 347777777652 25788888899999998776531 12222111122111111 011133333322
Q ss_pred cccceeeeeeEEecCceeeeeeeeEEecccccceeEecceecc---ceEEEcCCccEEEEceeeee
Q 041981 288 SGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDY---TGIVAEDPVQLHISSSFFLG 350 (379)
Q Consensus 288 ~gqqn~i~~i~~~n~~Tg~~G~GI~~~~~g~~~~~I~nCyldy---~~i~~~~~~~i~I~~~~~~g 350 (379)
.+..+.++.+..+..+ +.+. -.+..|.||+.+- +||.+++..++.|.+|.|.+
T Consensus 164 --~~~~~~~~~~~~~~~g-----~~~~---~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~ 219 (225)
T PF12708_consen 164 --NNVIVNNCIFNGGDNG-----IILG---NNNITISNNTFEGNCGNGINIEGGSNIIISNNTIEN 219 (225)
T ss_dssp --EEEEEECEEEESSSCS-----EECE---EEEEEEECEEEESSSSESEEEEECSEEEEEEEEEES
T ss_pred --eEEEECCccccCCCce-----eEee---cceEEEEeEEECCccceeEEEECCeEEEEEeEEEEC
Confidence 2344466777777655 2111 1355677776643 58888888888888877764
No 59
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=91.13 E-value=5.4 Score=40.05 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=34.7
Q ss_pred CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCc-cccccccCccEEEEcCC-EEEEecceE
Q 041981 80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSL-MEGISNLGGAEIHLEGG-NYLISKPLR 145 (379)
Q Consensus 80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~-~~g~t~~ggavV~lP~G-tYlVs~pI~ 145 (379)
....+|+.||-. .|=-++|..|++++-..--...+ |.-+ ..-|++|+| |.+|-+.|.
T Consensus 31 ~~~~vni~dy~~-----~dwiasfkqaf~e~qtvvvpagl~ceni----nt~ifip~gktl~v~g~l~ 89 (464)
T PRK10123 31 ARQSVNINDYNP-----HDWIASFKQAFSEGQTVVVPAGLVCDNI----NTGIFIPPGKTLHILGSLR 89 (464)
T ss_pred CCceeehhhcCc-----ccHHHHHHHHhccCcEEEecCccEeccc----ccceEeCCCCeEEEEEEee
Confidence 566789999964 35578899999887321000111 3333 335899999 566655554
No 60
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=91.11 E-value=3.1 Score=42.47 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=10.0
Q ss_pred CCceeEeeeeeEEEeccee
Q 041981 226 SNGILVQSGHETYIRNSFL 244 (379)
Q Consensus 226 tdGIhi~~s~~v~I~ns~I 244 (379)
.-||.+..+..+.|+...|
T Consensus 120 ~~Gi~l~~s~d~~i~~n~i 138 (408)
T COG3420 120 SFGIYLHGSADVRIEGNTI 138 (408)
T ss_pred ceEEEEeccCceEEEeeEE
Confidence 4555555555555554443
No 61
>smart00656 Amb_all Amb_all domain.
Probab=90.84 E-value=4.6 Score=37.43 Aligned_cols=60 Identities=13% Similarity=0.307 Sum_probs=30.9
Q ss_pred CCceeEeeeeeEEEecceeeee-cccCCCCCccccceeeEEec-CCcc-EEEEEEEEecceeEEEcc
Q 041981 226 SNGILVQSGHETYIRNSFLGQH-ITAGGDPGERNFTGTAINLM-GNDN-AVTDVVIFSAAVGIMVSG 289 (379)
Q Consensus 226 tdGIhi~~s~~v~I~ns~Ig~~-~~~ggd~~~~~~~gtGI~i~-gn~~-~vsD~~i~~g~~G~~v~g 289 (379)
.|+|.++.++.+-|.+|.+... +.+. +....++ -+++. +.++ +|+.+.|.....|..++.
T Consensus 60 ~D~i~~~~~~~VwIDHct~s~~~~~~~---~~~~~D~-~~di~~~s~~vTvs~~~f~~h~~~~liG~ 122 (190)
T smart00656 60 GDAISIDGSSNVWIDHVSLSGCTVTGF---GDDTYDG-LIDIKNGSTYVTISNNYFHNHWKVMLLGH 122 (190)
T ss_pred CCEEEEeCCCeEEEEccEeEcceeccC---CCCCCCc-cEEECcccccEEEECceEecCCEEEEEcc
Confidence 3666666666666666665542 1100 0000111 12332 3344 777778877777777765
No 62
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=89.09 E-value=10 Score=35.40 Aligned_cols=21 Identities=10% Similarity=0.272 Sum_probs=8.1
Q ss_pred CCceeEeeeeeEEEecceeee
Q 041981 226 SNGILVQSGHETYIRNSFLGQ 246 (379)
Q Consensus 226 tdGIhi~~s~~v~I~ns~Ig~ 246 (379)
.|+|.+..++.+-|.+|.+..
T Consensus 75 ~Dai~i~~~~nVWIDH~sfs~ 95 (200)
T PF00544_consen 75 GDAISIDNSSNVWIDHCSFSW 95 (200)
T ss_dssp --SEEEESTEEEEEES-EEEE
T ss_pred CCeEEEEecccEEEeccEEec
Confidence 344444444444444444433
No 63
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=89.07 E-value=16 Score=37.42 Aligned_cols=146 Identities=19% Similarity=0.192 Sum_probs=69.7
Q ss_pred ccCCceEEcccceEEeeEEEEeecCCceeEeeeeeEEEe-----cceeeeecccCCCCCc--ccc--ceeeEEecCCcc-
Q 041981 202 RGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIR-----NSFLGQHITAGGDPGE--RNF--TGTAINLMGNDN- 271 (379)
Q Consensus 202 ~~~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~-----ns~Ig~~~~~ggd~~~--~~~--~gtGI~i~gn~~- 271 (379)
++.||++.|++...|..-.|... .|||-.+.|++-.|+ .|..|.|.-...+... .++ +-+|.-+.-++.
T Consensus 149 rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~~~RygvHyM~t~~s~i~dn~s~~N~vG~ALMys~~l 227 (408)
T COG3420 149 RGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFRDLRYGVHYMYTNDSRISDNSSRDNRVGYALMYSDRL 227 (408)
T ss_pred ccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchhheeeeEEEEeccCcEeecccccCCcceEEEEEeccE
Confidence 46788999999877755455544 688888777766554 4555555321111111 000 223333222222
Q ss_pred EEEEEEEEe-cceeEEEcccceeeeeeEEecCceeeeeeeeEEeccc-----ccceeEecceeccceEEEc-CCccEEEE
Q 041981 272 AVTDVVIFS-AAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPG-----NTQTRIVNSYMDYTGIVAE-DPVQLHIS 344 (379)
Q Consensus 272 ~vsD~~i~~-g~~G~~v~gqqn~i~~i~~~n~~Tg~~G~GI~~~~~g-----~~~~~I~nCyldy~~i~~~-~~~~i~I~ 344 (379)
.|+|..=++ -..|+++.=-++ ++|+ .||..+ .-.|.++|-.+ ++.|.+.+||+ ||-.. .+.-..|.
T Consensus 228 ~V~~nrS~Gnrd~Gillnya~~--s~i~-~N~v~g-~~~Gk~vfiyn~~~~ki~~n~feg~~i---GIhltagsegn~~~ 300 (408)
T COG3420 228 KVSDNRSSGNRDHGILLNYANY--SRIV-GNRVAG-NVSGKCVFIYNANYNKIRGNSFEGCAI---GIHLTAGSEGNEII 300 (408)
T ss_pred EEEcCcccCccccceeeeeeec--ccee-ccEEEe-cccceEEEEeccchhhhccceeecceE---EEEEeccccCcEEe
Confidence 444443333 235666542111 1111 222222 22345555555 44555555543 22222 23345677
Q ss_pred ceeeeecceeE
Q 041981 345 SSFFLGDAFIV 355 (379)
Q Consensus 345 ~~~~~g~~~v~ 355 (379)
+|.|-|+.+=+
T Consensus 301 gNsFigNr~QV 311 (408)
T COG3420 301 GNSFIGNRVQV 311 (408)
T ss_pred cccccccceeE
Confidence 88888875433
No 64
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=88.33 E-value=12 Score=37.65 Aligned_cols=85 Identities=13% Similarity=0.250 Sum_probs=56.5
Q ss_pred cccCCceEEcccceEEeeEEEEeec-----CCceeE-eeeeeEEEecceeeeecccCCCCCccccceee-EEecCCcc--
Q 041981 201 YRGGAISVINSLRTSIDNCYIARFT-----SNGILV-QSGHETYIRNSFLGQHITAGGDPGERNFTGTA-INLMGNDN-- 271 (379)
Q Consensus 201 ~~~~gi~~~nSq~~~I~N~~i~~~n-----tdGIhi-~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtG-I~i~gn~~-- 271 (379)
..+.++.+.+++.+-|+|++|.++- -|+|.| ..+|++-|.+|.+-.+.. +-.-..+-| ++|....+
T Consensus 114 ~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~-----~~~~~h~DGl~Dik~~AnyI 188 (345)
T COG3866 114 LVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSY-----NASGSHGDGLVDIKKDANYI 188 (345)
T ss_pred EEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccc-----cccccCCCccEEeccCCcEE
Confidence 3456777777888888888888872 388888 788889999888766432 100111222 23333334
Q ss_pred EEEEEEEEecceeEEEccc
Q 041981 272 AVTDVVIFSAAVGIMVSGQ 290 (379)
Q Consensus 272 ~vsD~~i~~g~~G~~v~gq 290 (379)
+|+-.-|.....+.+++.+
T Consensus 189 TiS~n~fhdh~Kssl~G~s 207 (345)
T COG3866 189 TISYNKFHDHDKSSLLGSS 207 (345)
T ss_pred EEEeeeeecCCeeeeeccC
Confidence 7778888888888888764
No 65
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=87.09 E-value=31 Score=37.69 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEE-EEcc
Q 041981 94 TGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM-IHGG 159 (379)
Q Consensus 94 DG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~-igdG 159 (379)
||.. |=.-||+|++++-.. .....+|||-+|+|.= .|..+-. +.+++ +|+|
T Consensus 282 dGsG-~f~TI~~Av~a~p~~-----------~~~r~vI~ik~GvY~E--~V~i~~~-k~ni~l~Gdg 333 (587)
T PLN02313 282 DGSG-DFTTVAAAVAAAPEK-----------SNKRFVIHIKAGVYRE--NVEVTKK-KKNIMFLGDG 333 (587)
T ss_pred CCCC-CCccHHHHHHhcccc-----------CCceEEEEEeCceeEE--EEEeCCC-CCeEEEEecC
Confidence 4433 466899999988321 1136799999999983 5777632 34554 5664
No 66
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=86.56 E-value=5 Score=43.30 Aligned_cols=75 Identities=7% Similarity=-0.051 Sum_probs=49.2
Q ss_pred eEEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCcc-EEEEEEEEecceeE
Q 041981 207 SVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDN-AVTDVVIFSAAVGI 285 (379)
Q Consensus 207 ~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~-~vsD~~i~~g~~G~ 285 (379)
.+..+..+.+++++|....-.++|...+.++.|+|-.|-..- .. +--|++++.-.+ -|.+|.|..|.+.+
T Consensus 242 ~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~----~~-----NtDG~d~~sc~NvlI~~~~fdtgDD~I 312 (542)
T COG5434 242 VLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANR----FD-----NTDGFDPGSCSNVLIEGCRFDTGDDCI 312 (542)
T ss_pred EEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCC----CC-----CCCccccccceeEEEeccEEecCCceE
Confidence 334455555666666666667788888888888887766641 11 445777777777 77777777777776
Q ss_pred EEccc
Q 041981 286 MVSGQ 290 (379)
Q Consensus 286 ~v~gq 290 (379)
.+...
T Consensus 313 ~iksg 317 (542)
T COG5434 313 AIKSG 317 (542)
T ss_pred Eeecc
Confidence 66543
No 67
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=86.07 E-value=10 Score=39.24 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=46.1
Q ss_pred ceEEeeEEEEeec-CCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCCccEEEEEEEEecceeEEEcc-c
Q 041981 213 RTSIDNCYIARFT-SNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSG-Q 290 (379)
Q Consensus 213 ~~~I~N~~i~~~n-tdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~~vsD~~i~~g~~G~~v~g-q 290 (379)
++.+.||.|..-. -.|+.+....++.|++|..-.+ .|+.|.+.. +..|..|.|.+.-.|+.-.+ -
T Consensus 122 ~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf------------~g~cl~~~~-~~~VrGC~F~~C~~gi~~~~~~ 188 (386)
T PF01696_consen 122 GVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF------------HGTCLESWA-GGEVRGCTFYGCWKGIVSRGKS 188 (386)
T ss_pred eeEEEEEEEecCCccceeEEEecceEEEEeeEEecC------------cceeEEEcC-CcEEeeeEEEEEEEEeecCCcc
Confidence 4666777777754 5677777777778888775554 445555442 22555555555555554332 2
Q ss_pred ceeeeeeEEecCceee
Q 041981 291 ANTFSGVHCYNKATGF 306 (379)
Q Consensus 291 qn~i~~i~~~n~~Tg~ 306 (379)
+.+++...|..|.-|+
T Consensus 189 ~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 189 KLSVKKCVFEKCVIGI 204 (386)
T ss_pred eEEeeheeeeheEEEE
Confidence 4455555555554443
No 68
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=85.42 E-value=26 Score=34.64 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=17.5
Q ss_pred EEcccceEEeeEEEEeecCCceeEeeeeeEEEecceeee
Q 041981 208 VINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQ 246 (379)
Q Consensus 208 ~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~ 246 (379)
+..+..+.|+||++.--...||+- ++++.|.+|.|.-
T Consensus 54 ~Wh~~~~~i~~~~f~~~aRa~iWY--s~~i~m~d~~i~a 90 (277)
T PF12541_consen 54 LWHSDNIKIENCYFTEMARAAIWY--SNNITMKDSVIQA 90 (277)
T ss_pred eEEECCeEEEeeEEeecceeeeeE--eCCEEEEeeeccC
Confidence 334444555555554444445442 2445555554443
No 69
>PLN02304 probable pectinesterase
Probab=84.95 E-value=52 Score=34.15 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=32.7
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ec
Q 041981 92 DPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HG 158 (379)
Q Consensus 92 ~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gd 158 (379)
.+||..| =.-+|+||+++-... ....+|+|-+|+|. ..|..+.. +.++++ |+
T Consensus 80 a~dGsGd-f~TIQ~AIdavP~~~-----------~~r~vI~Ik~GvY~--EkV~Ip~~-K~~Itl~G~ 132 (379)
T PLN02304 80 DPNGCCN-FTTVQSAVDAVGNFS-----------QKRNVIWINSGIYY--EKVTVPKT-KPNITFQGQ 132 (379)
T ss_pred CCCCCCC-ccCHHHHHhhCcccC-----------CCcEEEEEeCeEeE--EEEEECCC-CCcEEEEec
Confidence 3455544 567999999973211 12578999999997 35777531 345543 44
No 70
>PLN02634 probable pectinesterase
Probab=82.67 E-value=62 Score=33.32 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE-Ec
Q 041981 93 PTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI-HG 158 (379)
Q Consensus 93 gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i-gd 158 (379)
+||.. |=.-||+|++++-.. +....+|+|=+|+|. ..|.++.. +.++++ |+
T Consensus 62 ~dGsG-df~TIQaAIda~P~~-----------~~~r~vI~Ik~GvY~--EkV~Ip~~-k~~ItL~G~ 113 (359)
T PLN02634 62 ANGHG-DFRSVQDAVDSVPKN-----------NTMSVTIKINAGFYR--EKVVVPAT-KPYITFQGA 113 (359)
T ss_pred CCCCC-CccCHHHHHhhCccc-----------CCccEEEEEeCceEE--EEEEEcCC-CCeEEEEec
Confidence 34543 366799999998321 113678999999997 35777631 345543 54
No 71
>smart00656 Amb_all Amb_all domain.
Probab=81.25 E-value=33 Score=31.71 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=58.3
Q ss_pred ceeeEEecCCcc-EEEEEEEEec---------ceeEEE-c--ccceeeeeeEEecCceeeeeeeeEEeccc------ccc
Q 041981 260 TGTAINLMGNDN-AVTDVVIFSA---------AVGIMV-S--GQANTFSGVHCYNKATGFGGTGIYLKLPG------NTQ 320 (379)
Q Consensus 260 ~gtGI~i~gn~~-~vsD~~i~~g---------~~G~~v-~--gqqn~i~~i~~~n~~Tg~~G~GI~~~~~g------~~~ 320 (379)
.+.+|.+++.++ .|--|.|..+ .+|... . ...-++++.+|.+.. .+..+-.-. .-+
T Consensus 59 ~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~-----~~~liG~~d~~~~~~~~~ 133 (190)
T smart00656 59 DGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHW-----KVMLLGHSDSDTDDGKMR 133 (190)
T ss_pred CCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCC-----EEEEEccCCCccccccce
Confidence 456788888777 5666677666 566543 2 234555555654433 333322100 012
Q ss_pred eeEecceeccceEE---EcCCccEEEEceeeeecceeEeeeccceeeeeEEEeeeccC
Q 041981 321 TRIVNSYMDYTGIV---AEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSG 375 (379)
Q Consensus 321 ~~I~nCyldy~~i~---~~~~~~i~I~~~~~~g~~~v~l~~~~~~~~~~~i~~n~f~~ 375 (379)
..+.+||.+-+.-| +.. .++|+-+|.|.....-++..-.+. -+-+.+|.|..
T Consensus 134 vT~h~N~~~~~~~R~P~~r~-g~~hv~NN~~~n~~~~~~~~~~~~--~v~~E~N~F~~ 188 (190)
T smart00656 134 VTIAHNYFGNLRQRAPRVRF-GYVHVYNNYYTGWTSYAIGGRMGA--TILSEGNYFEA 188 (190)
T ss_pred EEEECcEEcCcccCCCcccC-CEEEEEeeEEeCcccEeEecCCCc--EEEEECeEEEC
Confidence 34455554332222 111 279999999998775555544322 45667788764
No 72
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=75.25 E-value=4.6 Score=28.09 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=29.3
Q ss_pred CceEEcccceEEeeEEEEeecCCceeEeeeeeEEEeccee
Q 041981 205 AISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFL 244 (379)
Q Consensus 205 gi~~~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~I 244 (379)
||.+..|....|.+.++... .+||++..++...|++..+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~-~~GI~~~~s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN-SYGIYLTDSSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCC-CCEEEEEeCCCCEeECCEE
Confidence 56677778877888888875 5699998887777766654
No 73
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=70.36 E-value=6.9 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=21.9
Q ss_pred ccceeEecceeccceEEEcCCccEEEEceeeeec
Q 041981 318 NTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGD 351 (379)
Q Consensus 318 ~~~~~I~nCyldy~~i~~~~~~~i~I~~~~~~g~ 351 (379)
+..|+|.+| .+ ||.......-.|.+|.+.+.
T Consensus 12 i~~N~i~~~--~~-GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 12 LENNTASNN--SY-GIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred EECcEEeCC--CC-EEEEEeCCCCEeECCEEEcC
Confidence 445555555 45 88888888888888887754
No 74
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=59.00 E-value=80 Score=32.00 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=28.0
Q ss_pred eEEeeEEEEeecCCceeEee---eeeEEEecceeeeecccCCCCCccccceeeEEecCC
Q 041981 214 TSIDNCYIARFTSNGILVQS---GHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGN 269 (379)
Q Consensus 214 ~~I~N~~i~~~ntdGIhi~~---s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn 269 (379)
..|.||+|.+...|.|.+.. -.++.|++-.|...- |. .-..-=|.||.+.|+
T Consensus 179 aritn~rfs~lqgdaiewnvaindr~ilisdhvie~in-ct---ngkinwgigiglags 233 (464)
T PRK10123 179 ANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERIN-CT---NGKINWGIGIGLAGS 233 (464)
T ss_pred ceeeccccccccCceEEEEEEecccceeeehheheeec-cc---CCcccceeeeeeccc
Confidence 55677777777667766642 234445544444321 11 111224678888876
No 75
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=56.93 E-value=49 Score=30.78 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=47.4
Q ss_pred cceeeeeeEEec-----------CceeeeeeeeEEecccccceeEecceeccc----------eE-E-EcCCccEEEEce
Q 041981 290 QANTFSGVHCYN-----------KATGFGGTGIYLKLPGNTQTRIVNSYMDYT----------GI-V-AEDPVQLHISSS 346 (379)
Q Consensus 290 qqn~i~~i~~~n-----------~~Tg~~G~GI~~~~~g~~~~~I~nCyldy~----------~i-~-~~~~~~i~I~~~ 346 (379)
++..+|+++|.+ ......+.+|.+. +.+..+|+-|.+... +. - ..++.++.|+.|
T Consensus 46 ~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~--~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n 123 (200)
T PF00544_consen 46 SNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID--NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNN 123 (200)
T ss_dssp EEEEEES-EEECEEEECSTEEETTEEECS--SEEEE--STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-
T ss_pred CeEEEECCEEEeccccCCcccCCCccccCCCeEEEE--ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEch
Confidence 345666677766 1222356777776 466888999965333 22 2 236779999999
Q ss_pred eeeecceeEeeecc----c-eeeeeEEEeeeccC
Q 041981 347 FFLGDAFIVLKSIN----G-VAKGVNIVDNLFSG 375 (379)
Q Consensus 347 ~~~g~~~v~l~~~~----~-~~~~~~i~~n~f~~ 375 (379)
.|.+.-...|.... . .-.-+++-+|.|..
T Consensus 124 ~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~ 157 (200)
T PF00544_consen 124 IFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFAN 157 (200)
T ss_dssp EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEE
T ss_pred hccccccccccCCCCCccccCCceEEEEeEEECc
Confidence 99887665554432 0 11467777887753
No 76
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=50.74 E-value=1.2e+02 Score=29.71 Aligned_cols=83 Identities=19% Similarity=0.328 Sum_probs=50.4
Q ss_pred eeEEecCCc-cEEEEEEEEecc----eeEEEcccceeeeeeEEecCceeeeeeeeEEec----cc-----ccceeEecce
Q 041981 262 TAINLMGND-NAVTDVVIFSAA----VGIMVSGQANTFSGVHCYNKATGFGGTGIYLKL----PG-----NTQTRIVNSY 327 (379)
Q Consensus 262 tGI~i~gn~-~~vsD~~i~~g~----~G~~v~gqqn~i~~i~~~n~~Tg~~G~GI~~~~----~g-----~~~~~I~nCy 327 (379)
.-+.|...+ ..|+-++|.-.. .|+++.+-..+|++.+|.+|. +.||.+.. +. +++|.+.+|.
T Consensus 89 qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess~~tI~Nntf~~~~----~~GI~v~g~~~~~~i~~~vI~GN~~~~~~ 164 (246)
T PF07602_consen 89 QNVTIILANNATISGVTITNPNIARGTGIWIESSSPTIANNTFTNNG----REGIFVTGTSANPGINGNVISGNSIYFNK 164 (246)
T ss_pred eeEEEEecCCCEEEEEEEEcCCCCcceEEEEecCCcEEEeeEEECCc----cccEEEEeeecCCcccceEeecceEEecC
Confidence 333444333 388888875543 578887778999999999973 33443322 12 3455555553
Q ss_pred eccceEEEcCCc---cEEEEceeeeec
Q 041981 328 MDYTGIVAEDPV---QLHISSSFFLGD 351 (379)
Q Consensus 328 ldy~~i~~~~~~---~i~I~~~~~~g~ 351 (379)
+||...+.. .-+|.+|.+..+
T Consensus 165 ---~Gi~i~~~~~~~~n~I~NN~I~~N 188 (246)
T PF07602_consen 165 ---TGISISDNAAPVENKIENNIIENN 188 (246)
T ss_pred ---cCeEEEcccCCccceeeccEEEeC
Confidence 466655433 347788777764
No 77
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=50.45 E-value=1.4e+02 Score=31.81 Aligned_cols=46 Identities=22% Similarity=0.492 Sum_probs=32.5
Q ss_pred ceeeEEecCCccEEEEEEEEe-cceeEEEcccceeeeeeEEecCcee
Q 041981 260 TGTAINLMGNDNAVTDVVIFS-AAVGIMVSGQANTFSGVHCYNKATG 305 (379)
Q Consensus 260 ~gtGI~i~gn~~~vsD~~i~~-g~~G~~v~gqqn~i~~i~~~n~~Tg 305 (379)
-|.|+.|+|..++|+++++.. ..-|+...+..+.++||..-.|.+.
T Consensus 324 lGVG~~~DG~~~yvsni~~~d~~g~G~~~~~~~~~ftNitvId~N~~ 370 (549)
T PF09251_consen 324 LGVGIGMDGKGGYVSNITVQDCAGAGIFIRGTNKVFTNITVIDTNTD 370 (549)
T ss_dssp SSESCEEECCS-EEEEEEEES-SSESEEEECCS-EEEEEEEES-STT
T ss_pred ceeeeeecCCCceEeeEEeecccCCceEEeecCCceeeeEEEecccc
Confidence 467778888878888888765 4577777777788888888777654
No 78
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=46.61 E-value=1.6e+02 Score=24.13 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=30.8
Q ss_pred cceEEEcCCccEEEEceeee----ecceeEeeeccceeeeeEEEe
Q 041981 330 YTGIVAEDPVQLHISSSFFL----GDAFIVLKSINGVAKGVNIVD 370 (379)
Q Consensus 330 y~~i~~~~~~~i~I~~~~~~----g~~~v~l~~~~~~~~~~~i~~ 370 (379)
+.||.........+.+|.+. +++..+.+.....+.+.+++.
T Consensus 93 ~~Gi~~~~~~~~~~~~N~i~~~~~g~G~~~~~~~~~~~~~~~~~~ 137 (146)
T smart00722 93 GAGIVVTAGSEGLFIGNRIITNNDGDGNYLSDSSGGDLIGNRIYD 137 (146)
T ss_pred eEEEEEECCccceEecCeEEeecCCCCEEEeCCCCcEEEcceeEe
Confidence 67999998888888888887 777777777776666644433
No 79
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=45.06 E-value=4e+02 Score=28.16 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=31.5
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEE
Q 041981 92 DPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMI 156 (379)
Q Consensus 92 ~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~i 156 (379)
.+||..| =.-||+||++|.... .....+|+|-+|+|. ..|.+|.- +.++++
T Consensus 87 a~dGsGd-f~TIQaAIdAa~~~~----------~~~r~~I~Ik~GvY~--EkV~Ip~~-kp~ItL 137 (422)
T PRK10531 87 AGTQGVT-HTTVQAAVDAAIAKR----------TNKRQYIAVMPGTYQ--GTVYVPAA-APPITL 137 (422)
T ss_pred CCCCCCC-ccCHHHHHhhccccC----------CCceEEEEEeCceeE--EEEEeCCC-CceEEE
Confidence 4555444 567999999873211 112578999999997 35777621 345543
No 80
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=43.71 E-value=1.3e+02 Score=30.63 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=55.3
Q ss_pred ccceeeeeeEEecCceeee-eeeeEEecccccceeEecceecc----------ceE--EEcCCccEEEEceeeeecceeE
Q 041981 289 GQANTFSGVHCYNKATGFG-GTGIYLKLPGNTQTRIVNSYMDY----------TGI--VAEDPVQLHISSSFFLGDAFIV 355 (379)
Q Consensus 289 gqqn~i~~i~~~n~~Tg~~-G~GI~~~~~g~~~~~I~nCyldy----------~~i--~~~~~~~i~I~~~~~~g~~~v~ 355 (379)
.++-.||||+|..-.++-. =++|.+. -+-+..+|+.|.|-+ .|. ..+++..|.|+.|.|.......
T Consensus 124 a~NVIirNltf~~~~~~d~~~D~Isi~-~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kss 202 (345)
T COG3866 124 AGNVIIRNLTFEGFYQGDPNYDAISIY-DDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSS 202 (345)
T ss_pred CCcEEEEeeEEEeeccCCCCCCcEEec-cCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeee
Confidence 3456677777765543322 1566665 235778899995532 122 2568889999999999877666
Q ss_pred eeecc------ceeeeeEEEeeeccCC
Q 041981 356 LKSIN------GVAKGVNIVDNLFSGK 376 (379)
Q Consensus 356 l~~~~------~~~~~~~i~~n~f~~~ 376 (379)
|=... ..-.-++|-+|.|.+.
T Consensus 203 l~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 203 LLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred eeccCCcccccCCceeEEEeccccccc
Confidence 54431 1234588888888765
No 81
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=42.96 E-value=96 Score=32.70 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=42.2
Q ss_pred eEEec-CCccEEEEEEEEecc-----eeEEEcccceeeeeeEEecCceeeeeeeeE---------------Eecccccce
Q 041981 263 AINLM-GNDNAVTDVVIFSAA-----VGIMVSGQANTFSGVHCYNKATGFGGTGIY---------------LKLPGNTQT 321 (379)
Q Consensus 263 GI~i~-gn~~~vsD~~i~~g~-----~G~~v~gqqn~i~~i~~~n~~Tg~~G~GI~---------------~~~~g~~~~ 321 (379)
+|.++ |+.+.|.+-.|.+.. =|+++-++.-+|.+=.|+++.+.-..-++. ++++-+..|
T Consensus 238 ~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~N 317 (425)
T PF14592_consen 238 SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANN 317 (425)
T ss_dssp EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-
T ss_pred eEEEecCCCceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecc
Confidence 45555 555688888887632 388988887777777787774332222221 111224677
Q ss_pred eEecce--eccce--------------EEEcCCccEEEEceeeeecc
Q 041981 322 RIVNSY--MDYTG--------------IVAEDPVQLHISSSFFLGDA 352 (379)
Q Consensus 322 ~I~nCy--ldy~~--------------i~~~~~~~i~I~~~~~~g~~ 352 (379)
.+.||. +.|.+ |+..-|.++++.+|.+..+-
T Consensus 318 T~In~~~~i~~g~g~~~~~~~~~~~~~i~s~~p~~~~~~nN~i~~~~ 364 (425)
T PF14592_consen 318 TFINCKSPIHFGAGSDEERKDVLPASNIRSARPINSTFANNIIYNDD 364 (425)
T ss_dssp EEES-SEEEESST-THHHHHHHHHHCT---B---SEEEES-EEE--S
T ss_pred eEEccCCceEEccccccccccccccccccccCCceEEeeCCeEEcCC
Confidence 788884 22222 35566889999999888774
No 82
>PLN02480 Probable pectinesterase
Probab=40.79 E-value=4.2e+02 Score=27.15 Aligned_cols=120 Identities=13% Similarity=0.256 Sum_probs=67.5
Q ss_pred cceeEEEEecccc--------cCCceE-EcccceEEeeEEEEeecCCceeEeeeeeEEEecceeeeecccCCCCCccccc
Q 041981 190 ITLEDLMFDSNYR--------GGAISV-INSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFT 260 (379)
Q Consensus 190 i~lrnl~~D~n~~--------~~gi~~-~nSq~~~I~N~~i~~~ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~ 260 (379)
..++||+|.+... ...+.+ +.+.+..|.||.|.+. -|=+. .....-+.++|.|.....
T Consensus 134 f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~-QDTLy-~~~gR~yf~~C~IeG~VD----------- 200 (343)
T PLN02480 134 FVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYST-HNTLF-DYKGRHYYHSCYIQGSID----------- 200 (343)
T ss_pred EEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecc-cceeE-eCCCCEEEEeCEEEeeee-----------
Confidence 4578888876532 123433 4566788899999886 23222 223456889999887653
Q ss_pred eeeEEecCCcc-EEEEEEEEecc------eeEEEcccc---eeeeeeEEecCceeeeee-eeEEeccc--ccceeEecce
Q 041981 261 GTAINLMGNDN-AVTDVVIFSAA------VGIMVSGQA---NTFSGVHCYNKATGFGGT-GIYLKLPG--NTQTRIVNSY 327 (379)
Q Consensus 261 gtGI~i~gn~~-~vsD~~i~~g~------~G~~v~gqq---n~i~~i~~~n~~Tg~~G~-GI~~~~~g--~~~~~I~nCy 327 (379)
+|-|+.. ..-+|.|..-. .|.+ ..|. ..-.+.-|.+|.- .|. -.+|=|+= .+++-+.+||
T Consensus 201 ----FIFG~g~a~fe~C~i~s~~~~~~~~~G~I-TA~~r~~~~~~GfvF~~C~i--~g~g~~yLGRPW~~ya~vVf~~t~ 273 (343)
T PLN02480 201 ----FIFGRGRSIFHNCEIFVIADRRVKIYGSI-TAHNRESEDNSGFVFIKGKV--YGIGEVYLGRAKGAYSRVIFAKTY 273 (343)
T ss_pred ----EEccceeEEEEccEEEEecCCCCCCceEE-EcCCCCCCCCCEEEEECCEE--cccCceeeecCCCCcceEEEEecc
Confidence 2335544 66677765421 2432 2221 1123555555542 121 24555543 7888899998
Q ss_pred ec
Q 041981 328 MD 329 (379)
Q Consensus 328 ld 329 (379)
|+
T Consensus 274 l~ 275 (343)
T PLN02480 274 LS 275 (343)
T ss_pred cC
Confidence 85
No 83
>PRK13658 hypothetical protein; Provisional
Probab=37.32 E-value=47 Score=25.28 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHhhhhcccccc
Q 041981 41 HFHEKVRQMQEFKASFSRRDLAAA 64 (379)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~ 64 (379)
.||-+++.|+-||+.|...-...+
T Consensus 24 dyHSAI~NLEILKaELL~~~~~~~ 47 (59)
T PRK13658 24 DYHSAIHNLEILKAELLRQVAEST 47 (59)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccc
Confidence 899999999999999997733333
No 84
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=36.51 E-value=1.2e+02 Score=24.62 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 041981 101 EAILKALSD 109 (379)
Q Consensus 101 ~Aiq~Ai~~ 109 (379)
+||.+|+..
T Consensus 68 avIsAAI~~ 76 (82)
T PRK02919 68 PVIAAAIHH 76 (82)
T ss_pred HHHHHHHHH
Confidence 356666543
No 85
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=33.84 E-value=1.2e+02 Score=32.14 Aligned_cols=77 Identities=18% Similarity=0.386 Sum_probs=46.6
Q ss_pred EEEEEEEEec-ceeEEEcccceeeeeeEEecCceeeeeeeeEEeccc--ccceeEecce-eccceEEEcCCccEEEEc-e
Q 041981 272 AVTDVVIFSA-AVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPG--NTQTRIVNSY-MDYTGIVAEDPVQLHISS-S 346 (379)
Q Consensus 272 ~vsD~~i~~g-~~G~~v~gqqn~i~~i~~~n~~Tg~~G~GI~~~~~g--~~~~~I~nCy-ldy~~i~~~~~~~i~I~~-~ 346 (379)
-|.++.+.+. .+|++.-+|-+.++||..+.| .|.|++...-+ +++..+.+|- +.| +..||.|.| |
T Consensus 314 iidNi~~~~~lGVG~~~DG~~~yvsni~~~d~----~g~G~~~~~~~~~ftNitvId~N~~n~------~~nQI~i~G~~ 383 (549)
T PF09251_consen 314 IIDNILVRGSLGVGIGMDGKGGYVSNITVQDC----AGAGIFIRGTNKVFTNITVIDTNTDNF------NANQIYIEGAC 383 (549)
T ss_dssp EEEEEEEES-SSESCEEECCS-EEEEEEEES-----SSESEEEECCS-EEEEEEEES-STT-S------SSECEEE-SS-
T ss_pred hhhhhheeccceeeeeecCCCceEeeEEeecc----cCCceEEeecCCceeeeEEEeccccCC------CCceEEEecce
Confidence 5666666554 588999999999999999999 78888887655 5666666661 111 335777777 5
Q ss_pred eeeecceeEeee
Q 041981 347 FFLGDAFIVLKS 358 (379)
Q Consensus 347 ~~~g~~~v~l~~ 358 (379)
-..|-+-|-+++
T Consensus 384 ~vnGir~igi~~ 395 (549)
T PF09251_consen 384 IVNGIRLIGIKP 395 (549)
T ss_dssp EEEEEEE-ECC-
T ss_pred EEcceeEeeeec
Confidence 555544443443
No 86
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=29.04 E-value=5.9e+02 Score=25.41 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=18.7
Q ss_pred eeeeeeEEecCceeeeeeeeEEecccccceeEecceeccceEEEc
Q 041981 292 NTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAE 336 (379)
Q Consensus 292 n~i~~i~~~n~~Tg~~G~GI~~~~~g~~~~~I~nCyldy~~i~~~ 336 (379)
+.-+||++-||.-- +=.|... ..+-.+.||.|.-+-.--|
T Consensus 191 W~SkNltliNC~I~-g~QpLCY----~~~L~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 191 WNSKNLTLINCTIE-GTQPLCY----CDNLVLENCTMIDTDLAFE 230 (277)
T ss_pred EEcCCeEEEEeEEe-ccCccEe----ecceEEeCcEeecceeeee
Confidence 33445677666311 1122222 2445567777654433333
No 87
>PRK09718 hypothetical protein; Validated
Probab=26.26 E-value=1.4e+02 Score=32.25 Aligned_cols=55 Identities=5% Similarity=0.024 Sum_probs=30.0
Q ss_pred eeeeeeEEecCceeeeeeeeEEecccccceeEecceeccceEEEcCCccEEEEceeeee
Q 041981 292 NTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLG 350 (379)
Q Consensus 292 n~i~~i~~~n~~Tg~~G~GI~~~~~g~~~~~I~nCyldy~~i~~~~~~~i~I~~~~~~g 350 (379)
-.+++++|.+|. ..|.++..+.+.+..+.+|-|.|+....-.=.++...++.+.+
T Consensus 145 A~L~rvsFinCK----LsGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLse 199 (512)
T PRK09718 145 RRLHNVIFIKAS----GEYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYA 199 (512)
T ss_pred ceecceEEEecc----ccCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCc
Confidence 455667777774 4555555555566666666665554443334444444444443
No 88
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=24.95 E-value=3.1e+02 Score=21.25 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 041981 101 EAILKALSD 109 (379)
Q Consensus 101 ~Aiq~Ai~~ 109 (379)
+||-+|+..
T Consensus 67 AaI~AAi~~ 75 (79)
T PF04277_consen 67 AAIAAAIAA 75 (79)
T ss_pred HHHHHHHHH
Confidence 344444443
No 89
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=23.23 E-value=2.7e+02 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=11.5
Q ss_pred eEEEcCCccEEEEceeeeec
Q 041981 332 GIVAEDPVQLHISSSFFLGD 351 (379)
Q Consensus 332 ~i~~~~~~~i~I~~~~~~g~ 351 (379)
||+.+...+..|.+|-|-|.
T Consensus 57 GIv~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 57 GIVTSGFYNTLIENNVFDGV 76 (198)
T ss_pred eEEeccccccEEEeeeeccc
Confidence 55555555556666666555
No 90
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=21.03 E-value=55 Score=30.62 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.8
Q ss_pred ccEEEEcCCEEEEecceEecC
Q 041981 128 GAEIHLEGGNYLISKPLRLPD 148 (379)
Q Consensus 128 gavV~lP~GtYlVs~pI~f~g 148 (379)
+-+.++|.|.|+|| ..+||+
T Consensus 58 ~NV~V~~~g~YiIS-~aTFPs 77 (182)
T PF08218_consen 58 PNVTVHPGGDYIIS-SATFPS 77 (182)
T ss_pred CCEEEEcCCCeeee-cccChh
Confidence 56889999999998 899994
No 91
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=20.71 E-value=1.2e+02 Score=17.33 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=13.0
Q ss_pred ceEEeeEEEEeecCCceeEe
Q 041981 213 RTSIDNCYIARFTSNGILVQ 232 (379)
Q Consensus 213 ~~~I~N~~i~~~ntdGIhi~ 232 (379)
.+.|.+|+|.....+||.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 45677777777655566654
Done!