BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041984
MKVSNLELVFTCTYGPMSFLNGKVVIKLSLEGHKSRSKALKIAVRVSGVESVALKGDDRS
QIEVTGDGMDPVLLTSLLRKTMRFAELLTVINLKPKIM

High Scoring Gene Products

Symbol, full name Information P value
AT3G07600 protein from Arabidopsis thaliana 3.1e-12
AT5G48290 protein from Arabidopsis thaliana 6.4e-12
AT4G05030 protein from Arabidopsis thaliana 8.4e-10
AT3G20180 protein from Arabidopsis thaliana 2.6e-08
AT1G01490 protein from Arabidopsis thaliana 0.00012

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041984
        (98 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2091112 - symbol:AT3G07600 species:3702 "Arabi...   164  3.1e-12   1
TAIR|locus:2156253 - symbol:AT5G48290 species:3702 "Arabi...   161  6.4e-12   1
TAIR|locus:2138376 - symbol:AT4G05030 "AT4G05030" species...   141  8.4e-10   1
TAIR|locus:2087580 - symbol:AT3G20180 "AT3G20180" species...   127  2.6e-08   1
TAIR|locus:2025421 - symbol:AT1G01490 species:3702 "Arabi...    94  0.00012   1


>TAIR|locus:2091112 [details] [associations]
            symbol:AT3G07600 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0030001 EMBL:AC009176
            ProtClustDB:CLSN2684848 IPI:IPI00519941 RefSeq:NP_187417.1
            UniGene:At.18333 UniGene:At.48632 ProteinModelPortal:Q9SSF0
            SMR:Q9SSF0 EnsemblPlants:AT3G07600.1 GeneID:819951
            KEGG:ath:AT3G07600 eggNOG:NOG286763 OMA:QDPNCRI
            Genevestigator:Q9SSF0 Uniprot:Q9SSF0
        Length = 157

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/73 (43%), Positives = 53/73 (72%)

Query:    23 KVVIKLSLEGHKSRSKALKIAVRVSGVESVALKGDDRSQIEVTGDGMDPVLLTSLLRKTM 82
             K++I++++    +R+KA+K AV+  GV +V +KGD R+QIEVTG  +D + L + LRK +
Sbjct:     4 KILIRIAMTDDTTRAKAMKTAVQFKGVNAVEIKGDHRNQIEVTGVEVDMIALINTLRKKV 63

Query:    83 RFAELLTVINLKP 95
              FAEL++V  ++P
Sbjct:    64 AFAELVSVAKVEP 76


>TAIR|locus:2156253 [details] [associations]
            symbol:AT5G48290 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0030001
            HOGENOM:HOG000237719 EMBL:BT020300 EMBL:BT020469 IPI:IPI00541268
            RefSeq:NP_568695.1 UniGene:At.28683 ProteinModelPortal:Q5PNZ7
            SMR:Q5PNZ7 EnsemblPlants:AT5G48290.1 GeneID:834882
            KEGG:ath:AT5G48290 TAIR:At5g48290 eggNOG:NOG241974
            InParanoid:Q5PNZ7 OMA:NDIGEPV PhylomeDB:Q5PNZ7
            ProtClustDB:CLSN2684848 Genevestigator:Q5PNZ7 Uniprot:Q5PNZ7
        Length = 181

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 32/73 (43%), Positives = 53/73 (72%)

Query:    23 KVVIKLSLEGHKSRSKALKIAVRVSGVESVALKGDDRSQIEVTGDGMDPVLLTSLLRKTM 82
             K++I++++   K+R+KA+  AV+  GV +V +KGD R+QIEVTG  +D + L  +LRK +
Sbjct:     4 KILIRVTMTDDKTRAKAMTKAVQFKGVSAVEIKGDHRNQIEVTGVEVDMIPLIQILRKKV 63

Query:    83 RFAELLTVINLKP 95
              FAEL++V  ++P
Sbjct:    64 AFAELVSVTKVEP 76


>TAIR|locus:2138376 [details] [associations]
            symbol:AT4G05030 "AT4G05030" species:3702 "Arabidopsis
            thaliana" [GO:0046872 "metal ion binding" evidence=ISS]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161502 EMBL:AF162444
            IPI:IPI00529329 PIR:C85063 RefSeq:NP_567284.1 UniGene:At.54153
            ProteinModelPortal:Q9S9T4 SMR:Q9S9T4 EnsemblPlants:AT4G05030.1
            GeneID:825845 KEGG:ath:AT4G05030 TAIR:At4g05030 eggNOG:NOG284398
            InParanoid:Q9S9T4 OMA:YYGYYCH PhylomeDB:Q9S9T4
            ProtClustDB:CLSN2917512 ArrayExpress:Q9S9T4 Genevestigator:Q9S9T4
            Uniprot:Q9S9T4
        Length = 110

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 33/95 (34%), Positives = 58/95 (61%)

Query:     2 KVSNLELV-FTCTY--GPMSFLNGKVVIKLSLEGHKSRSKALKIAVRVSGVESVALKGDD 58
             K  N  LV F   Y  GP+  L  K+++ +S+   K RS+ALKI  + +GV  V ++G++
Sbjct:    14 KTRNKGLVSFRAFYNSGPVVVLT-KILMSVSMRCDKCRSEALKIGAKTTGVTFVGIEGEE 72

Query:    59 RSQIEVTGDGMDPVLLTSLLRKTMRFAELLTVINL 93
             + ++ V G+G+D   L   LRK + FA++++V ++
Sbjct:    73 KDKVVVIGEGVDAACLVVRLRKKVGFADIISVTDV 107


>TAIR|locus:2087580 [details] [associations]
            symbol:AT3G20180 "AT3G20180" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND]
            EMBL:CP002686 IPI:IPI00542114 RefSeq:NP_188653.1 UniGene:At.63564
            ProteinModelPortal:F4JDJ0 DNASU:821562 EnsemblPlants:AT3G20180.1
            GeneID:821562 KEGG:ath:AT3G20180 OMA:GEFQDEL PhylomeDB:F4JDJ0
            Uniprot:F4JDJ0
        Length = 118

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/73 (39%), Positives = 44/73 (60%)

Query:    26 IKLSLEGHKSRSKALKIAVRVSGVESVALKGDDRSQIEVTGDGMDPVLLTSLLRKTMRFA 85
             IKLS+   K R KA+++AV   GV SVA++G+ + ++ V GDG+D   L   LRK     
Sbjct:     3 IKLSVNSEKCRKKAMQVAVAADGVTSVAMEGEFQDELVVVGDGVDSASLIMALRKKACHV 62

Query:    86 ELLTVINLK-PKI 97
              L T+  +K P++
Sbjct:    63 TLETLEEVKKPQV 75


>TAIR|locus:2025421 [details] [associations]
            symbol:AT1G01490 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002684
            GO:GO:0046872 GO:GO:0030001 EMBL:AY063805 EMBL:AY091276 EMBL:Y10084
            IPI:IPI00534476 RefSeq:NP_001030928.1 RefSeq:NP_171656.1
            UniGene:At.27454 ProteinModelPortal:O03982 PaxDb:O03982
            PRIDE:O03982 EnsemblPlants:AT1G01490.1 EnsemblPlants:AT1G01490.2
            GeneID:839440 KEGG:ath:AT1G01490 TAIR:At1g01490 eggNOG:NOG282717
            InParanoid:O03982 OMA:TYYYAQS PhylomeDB:O03982
            ProtClustDB:CLSN2912783 ArrayExpress:O03982 Genevestigator:O03982
            Uniprot:O03982
        Length = 177

 Score = 94 (38.1 bits), Expect = 0.00012, P = 0.00012
 Identities = 22/68 (32%), Positives = 41/68 (60%)

Query:    23 KVVIKLSLEGHKSRSKALKIAVRVSGVESVALKGDDRSQIEVTGDGMDPVLLTSLLRKTM 82
             K+V+KL L   +++ KALK    + G++S+A+   ++ ++ V G  +DPV + S LRK  
Sbjct:     3 KIVLKLDLHDDRAKQKALKTVSTLPGIDSIAMDMKEK-KLTVIGT-VDPVNVVSKLRKYW 60

Query:    83 RFAELLTV 90
                +++ V
Sbjct:    61 PMTDIVLV 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        98   0.00091  102 3  11 22  0.36    30
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  447 (48 KB)
  Total size of DFA:  79 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.61u 0.17s 8.78t   Elapsed:  00:00:01
  Total cpu time:  8.61u 0.17s 8.78t   Elapsed:  00:00:01
  Start:  Sat May 11 15:02:43 2013   End:  Sat May 11 15:02:44 2013

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