BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041985
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/428 (71%), Positives = 346/428 (80%), Gaps = 21/428 (4%)
Query: 4 KSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAE 63
K +SSY +LP +++S+AFPQATPA S FPPC SDYY +F+ LLT EEQAIRKKVREC E
Sbjct: 14 KKVKSSYFDLPPMEMSVAFPQATPA-STFPPCTSDYY-HFNDLLTPEEQAIRKKVRECME 71
Query: 64 KELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVS 123
KE+API+ EYWEKAEFPF + PKLGA+ +A G+IKGYGCPGL IT A+A AEIARVD S
Sbjct: 72 KEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDAS 131
Query: 124 CSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTAT 183
CS+FILVHSSL MLTIA GSE QK+KYLPS+AQL T+A WALTEPD GSDAS L TTAT
Sbjct: 132 CSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTAT 191
Query: 184 KVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLR 243
KVEGGW + GQKRW+GNSTFADLL+I ARNTTT QIN FIVKK APGL ATKI NKIGLR
Sbjct: 192 KVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLR 251
Query: 244 IVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLM 303
+VQNGD+LL+NVFVPDEDR+PG SFQDT L++SR+MVAWQ IGI+MG+YDMCHRYL
Sbjct: 252 MVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLK 311
Query: 304 ERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSR 363
ERKQFGAP A FQ+ QQKL QMLGN+QAM L GWR+C LYE G+MT G ASL K WI+S+
Sbjct: 312 ERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSK 371
Query: 364 ARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFKPA 407
ARET +LGRELLGGNGI DF VAK IN+L+TGRE+TG ASFKPA
Sbjct: 372 ARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPA 431
Query: 408 VLTQQSRL 415
+SRL
Sbjct: 432 T---RSRL 436
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/428 (71%), Positives = 346/428 (80%), Gaps = 21/428 (4%)
Query: 4 KSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAE 63
K +SSY +LP +++S+AFPQATPA S FPPC SDYY +F+ LLT EEQAIRKKVREC E
Sbjct: 14 KKVKSSYFDLPPMEMSVAFPQATPA-STFPPCTSDYY-HFNDLLTPEEQAIRKKVRECME 71
Query: 64 KELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVS 123
KE+API+ EYWEKAEFPF + PKLGA+ +A G+IKGYGCPGL IT A+A AEIARVD S
Sbjct: 72 KEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDAS 131
Query: 124 CSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTAT 183
CS+FILVHSSL MLTIA GSE QK+KYLPS+AQL T+A WALTEPD GSDAS L TTAT
Sbjct: 132 CSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTAT 191
Query: 184 KVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLR 243
KVEGGW + GQKRW+GNSTFADLL+I ARNTTT QIN FIVKK APGL ATKI NKIGLR
Sbjct: 192 KVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLR 251
Query: 244 IVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLM 303
+VQNGD+LL+NVFVPDEDR+PG SFQDT L++SR+MVAWQ IGI+MG+YDMCHRYL
Sbjct: 252 MVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLK 311
Query: 304 ERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSR 363
ERKQFGAP A FQ+ QQKL QMLGN+QAM L GWR+C LYE G+MT G ASL K WI+S+
Sbjct: 312 ERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSK 371
Query: 364 ARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFKPA 407
ARET +LGRELLGGNGI DF VAK IN+L+TGRE+TG ASFKPA
Sbjct: 372 ARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPA 431
Query: 408 VLTQQSRL 415
+SRL
Sbjct: 432 T---RSRL 436
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 201/381 (52%), Gaps = 19/381 (4%)
Query: 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYG 101
D L +E+ +R A+ +LAP V E + + ++G + + TI + YG
Sbjct: 15 LDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYG 74
Query: 102 CPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTI 161
PGL + E+ RVD S + V SSL M+ I ++GS+ QK+KYLP +A + I
Sbjct: 75 GPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWI 134
Query: 162 ASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILAR--NTTTKQI 219
+ LTEP++GSD ++ T A KV GG+ L G K W+ NS AD+ V+ A+ +I
Sbjct: 135 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEI 194
Query: 220 NAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSIS 279
FI++K GL+A I K+GLR G+++L FVP+E+ +P K + T L+ +
Sbjct: 195 RGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSA 254
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRV 339
R +AW ++G A + + +Y+++RKQFG P A Q+ Q+KLA M I + R+
Sbjct: 255 RYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRL 314
Query: 340 CNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------- 388
+ ++G S+ K +A + L R++LGGNGIS +F VA+
Sbjct: 315 GRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTY 374
Query: 389 -----INSLLTGREITGFASF 404
I++L+ GR TG +F
Sbjct: 375 EGTHDIHALILGRAQTGIQAF 395
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 201/381 (52%), Gaps = 19/381 (4%)
Query: 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYG 101
D L +E+ +R A+ +LAP V E + + ++G + + TI + YG
Sbjct: 14 LDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYG 73
Query: 102 CPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTI 161
PGL + E+ RVD S + V SSL M+ I ++GS+ QK+KYLP +A + I
Sbjct: 74 GPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWI 133
Query: 162 ASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILAR--NTTTKQI 219
+ LTEP++GSD ++ T A KV GG+ L G K W+ NS AD+ V+ A+ +I
Sbjct: 134 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEI 193
Query: 220 NAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSIS 279
FI++K GL+A I K+GLR G+++L FVP+E+ +P K + T L+ +
Sbjct: 194 RGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSA 253
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRV 339
R +AW ++G A + + +Y+++RKQFG P A Q+ Q+KLA M I + R+
Sbjct: 254 RYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRL 313
Query: 340 CNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------- 388
+ ++G S+ K +A + L R++LGGNGIS +F VA+
Sbjct: 314 GRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTY 373
Query: 389 -----INSLLTGREITGFASF 404
I++L+ GR TG +F
Sbjct: 374 EGTHDIHALILGRAQTGIQAF 394
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 201/381 (52%), Gaps = 19/381 (4%)
Query: 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYG 101
D L +E+ +R A+ +LAP V E + + ++G + + TI + YG
Sbjct: 18 LDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYG 77
Query: 102 CPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTI 161
PGL + E+ RVD S + V SSL M+ I ++GS+ QK+KYLP +A + I
Sbjct: 78 GPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWI 137
Query: 162 ASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILAR--NTTTKQI 219
+ LTEP++GSD ++ T A KV GG+ L G K W+ NS AD+ V+ A+ +I
Sbjct: 138 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEI 197
Query: 220 NAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSIS 279
FI++K GL+A I K+GLR G+++L FVP+E+ +P K + T L+ +
Sbjct: 198 RGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSA 257
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRV 339
R +AW ++G A + + +Y+++RKQFG P A Q+ Q+KLA M I + R+
Sbjct: 258 RYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRL 317
Query: 340 CNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------- 388
+ ++G S+ K +A + L R++LGGNGIS +F VA+
Sbjct: 318 GRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTY 377
Query: 389 -----INSLLTGREITGFASF 404
I++L+ GR TG +F
Sbjct: 378 EGTHDIHALILGRAQTGIQAF 398
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 196/387 (50%), Gaps = 19/387 (4%)
Query: 36 ASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIP-KLGALNIAA 94
+D I + +L++EE+ IR VR ++ + P +A ++E E P + + +LG L +
Sbjct: 19 GADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLG 78
Query: 95 GTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPS 154
+KGYGC G+ +A E+ D S + V SLAM I +GS+EQK ++LP
Sbjct: 79 MHLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPD 138
Query: 155 MAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT 214
MA I + LTEPD+GSD + +RT AT+ WIL G K W+ N + AD+ V+ AR
Sbjct: 139 MASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWAR-- 196
Query: 215 TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTIT 274
T + I F+V PG TA I++K+ LR +++L V +PD R+PG S +
Sbjct: 197 TDEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLGAPLR 256
Query: 275 TLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMIL 334
L+ +R + + ++G A + Y R+QF P FQ+TQQKLA M L
Sbjct: 257 CLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFL 316
Query: 335 AGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHV-------- 386
+ + G++ SL K A E R +LG +GI+ ++ V
Sbjct: 317 LALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLE 376
Query: 387 --------AKINSLLTGREITGFASFK 405
+++++L+ G+ +TG +F+
Sbjct: 377 SVLTYEGTSEMHTLIIGQALTGVGAFR 403
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 20/385 (5%)
Query: 38 DYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI 97
D+Y + LLT EE+ ++K R EKE P + ++WE+ FP +IP+ L T+
Sbjct: 3 DFYA-LEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTL 61
Query: 98 K-GYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMA 156
YG G+ + E+ RVD SF+ V SSL M I YGSEEQK+++LP +A
Sbjct: 62 PPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA 121
Query: 157 QLKTIASWALTEPDYGSDASALRTTATKVEGG-WILEGQKRWVGNSTFADLLVILARNTT 215
+ + + + LTEPD GSD T + EG W+L G K W+ N A L VI A++
Sbjct: 122 RGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEG 181
Query: 216 TKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITT 275
++ F+V PG A +++ K+ LR +++L+ V VP+ R+P + ++
Sbjct: 182 G-EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSC 240
Query: 276 LSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILA 335
L+ +R +AW ++G VY+ + R FG P A Q+ Q KLA+ML +L
Sbjct: 241 LTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLL 300
Query: 336 GWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK------- 388
WR+ L ++GK+T SLAK +A + + R++LGG+GI+ ++H +
Sbjct: 301 AWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNLET 360
Query: 389 ---------INSLLTGREITGFASF 404
+++L+ GREITG +F
Sbjct: 361 VYTYEGTHDVHTLVLGREITGLNAF 385
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 191/376 (50%), Gaps = 19/376 (5%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLC 106
LT++E IR R ++ L P + F ++I ++G L + TIKGYGC G+
Sbjct: 16 LTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVS 75
Query: 107 ITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWAL 166
+ E+ RVD S + V SSL M I YGSEEQ+QKYLP +A+ + + + L
Sbjct: 76 SVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGL 135
Query: 167 TEPDYGSDASALRTTA--TKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIV 224
TEP+ GSD S++ T A + L G K W+ NS ADL V+ AR I F++
Sbjct: 136 TEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIRGFLL 194
Query: 225 KKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVA 284
+K GL+A +I+ K LR G +++ V VP+E+ +PG S L+ +R +A
Sbjct: 195 EKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIA 254
Query: 285 WQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE 344
W +G + +Y ++R QFG P A Q+ Q+KLA ML I + A ++ L +
Sbjct: 255 WGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKD 314
Query: 345 DGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK---------------- 388
K SL K +A + R++LGGNGIS ++HV +
Sbjct: 315 QDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYDGTHD 374
Query: 389 INSLLTGREITGFASF 404
I++L+ GR ITG +F
Sbjct: 375 IHALILGRAITGIQAF 390
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 191/376 (50%), Gaps = 19/376 (5%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLC 106
LT++E IR R ++ L P + F ++I ++G L + TIKGYGC G+
Sbjct: 14 LTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVS 73
Query: 107 ITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWAL 166
+ E+ RVD S + V SSL M I YGSEEQ+QKYLP +A+ + + + L
Sbjct: 74 SVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGL 133
Query: 167 TEPDYGSDASALRTTA--TKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIV 224
TEP+ GSD S++ T A + L G K W+ NS ADL V+ AR I F++
Sbjct: 134 TEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIRGFLL 192
Query: 225 KKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVA 284
+K GL+A +I+ K LR G +++ V VP+E+ +PG S L+ +R +A
Sbjct: 193 EKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIA 252
Query: 285 WQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE 344
W +G + +Y ++R QFG P A Q+ Q+KLA ML I + A ++ L +
Sbjct: 253 WGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKD 312
Query: 345 DGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK---------------- 388
K SL K +A + R++LGGNGIS ++HV +
Sbjct: 313 QDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHD 372
Query: 389 INSLLTGREITGFASF 404
I++L+ GR ITG +F
Sbjct: 373 IHALILGRAITGIQAF 388
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 191/376 (50%), Gaps = 19/376 (5%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLC 106
LT++E IR R ++ L P + F ++I ++G L + TIKGYGC G+
Sbjct: 16 LTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVS 75
Query: 107 ITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWAL 166
+ E+ RVD S + V SSL M I YGSEEQ+QKYLP +A+ + + + L
Sbjct: 76 SVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGL 135
Query: 167 TEPDYGSDASALRTTA--TKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIV 224
TEP+ GSD S++ T A + L G K W+ NS ADL V+ AR I F++
Sbjct: 136 TEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIRGFLL 194
Query: 225 KKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVA 284
+K GL+A +I+ K LR G +++ V VP+E+ +PG S L+ +R +A
Sbjct: 195 EKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIA 254
Query: 285 WQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE 344
W +G + +Y ++R QFG P A Q+ Q+KLA ML I + A ++ L +
Sbjct: 255 WGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKD 314
Query: 345 DGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK---------------- 388
K SL K +A + R++LGGNGIS ++HV +
Sbjct: 315 QDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHD 374
Query: 389 INSLLTGREITGFASF 404
I++L+ GR ITG +F
Sbjct: 375 IHALILGRAITGIQAF 390
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 191/381 (50%), Gaps = 24/381 (6%)
Query: 44 DGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCP 103
D LL +E+ I VR+ + L P V ++E A P ++ + G L + ++GYGC
Sbjct: 23 DRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCA 82
Query: 104 GLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIAS 163
G +A E+ D SF+ V SL+M +I +YGSEEQK ++LP +A I
Sbjct: 83 GTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGC 142
Query: 164 WALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFI 223
+ LTEPD+GS+ + +RT A + WIL G K W+ N AD+ + A+ T I F+
Sbjct: 143 FGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQ--TDDGIRGFL 200
Query: 224 VKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMV 283
V PG TA +I K+ LR +++L NV +P ++P + ++ L+ +R +
Sbjct: 201 VPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSCLNEARFGI 260
Query: 284 AWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLY 343
+ ++G A + Y R+ F P + +Q+TQ+KLA M + +L + +
Sbjct: 261 VFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIK 320
Query: 344 EDGKMTAGHASLAKGWITSRARETVALGRE---LLGGNGISTDF----HVAKINSLLT-- 394
+ + SL K + RE +A+ RE LLGG+GI+ ++ H + S+LT
Sbjct: 321 DAEGVRPEQISLGK---LNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYE 377
Query: 395 ----------GREITGFASFK 405
G+ +TG A+F+
Sbjct: 378 GTSEMHLLSIGKALTGKAAFR 398
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 179/351 (50%), Gaps = 11/351 (3%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGL 105
L E A+R+ +R AEKE+AP AE EKA FP + + L + +A + + YG G
Sbjct: 19 LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGA 78
Query: 106 CITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWA 165
+ + E+ARVD S +S I + L + + GSEE K++ LP++A + +AS+A
Sbjct: 79 DSVATCIVIEEVARVDCS-ASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMASYA 137
Query: 166 LTEPDYGSDASALRTTATKVEGGWILEGQKRWV---GNSTFADLLVILARNTTTKQINAF 222
L+E + GSDA+++RT A WIL G K W+ G ST+ ++ + + I+AF
Sbjct: 138 LSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAF 197
Query: 223 IVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV---PGFKSFQDTITTLSIS 279
+V K G T E K+G++ ++ +N +P DR+ PG F+ + TL +
Sbjct: 198 MVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPG-DRIIGEPG-TGFKTALATLDHT 255
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRV 339
R + Q++GIA G D Y ERKQFG P + Q Q LA M I+A L +
Sbjct: 256 RPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSA 315
Query: 340 CNLYEDGKMTAGHASLA-KGWITSRARETVALGRELLGGNGISTDFHVAKI 389
E G+ G S A K + + A E +L GG G + DF V ++
Sbjct: 316 AARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERM 366
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 176/344 (51%), Gaps = 7/344 (2%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGL 105
L Q +R+ R+ AEKEL PI A+ ++ FP + K+G L + A + + GL
Sbjct: 10 LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGL 69
Query: 106 CITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWA 165
++AL EI+R S + V++SL + I ++GS +QKQ+++ I +A
Sbjct: 70 DYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFA 129
Query: 166 LTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILA---RNTTTKQINAF 222
L+EP GSDA A TTA + W+L G K W+ NS A V+ A R+ K I+AF
Sbjct: 130 LSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAF 189
Query: 223 IVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV--PGFKSFQDTITTLSISR 280
+V PGLT K E+K+G+R +++ ++ +P E+ + PG F+ + TL + R
Sbjct: 190 LVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGM-GFKIAMQTLDMGR 248
Query: 281 LMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVC 340
+ +A Q++GIA D +Y R FGAP Q Q KLA M +++ L WR
Sbjct: 249 IGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLLTWRAA 308
Query: 341 NLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDF 384
L ++ K +++AK + A ++LGG G T+
Sbjct: 309 MLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEM 352
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 180/349 (51%), Gaps = 10/349 (2%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKL---GALNIAAGTIKGYGCP 103
T EE I+ V++ A++++AP+V+ E ++ VI L G + I YG
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVD--PEYGGT 86
Query: 104 GLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIAS 163
G + + E+A+VD S + F + ++L I ++G+EEQK YLP + K + S
Sbjct: 87 GASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGS 145
Query: 164 WALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTT---KQIN 220
+ L+E GSD+ AL+T A K ++L G K W+ ++ A L +++A T K I
Sbjct: 146 FCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGIT 205
Query: 221 AFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSIS 279
+F+V + PGL K ENK+GLR + +NV VP+ + + ++ I +L+
Sbjct: 206 SFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEG 265
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRV 339
R+ +A Q +G+A G +D Y+ ER QFG FQ Q ++A + ++A L +
Sbjct: 266 RIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNA 325
Query: 340 CNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388
L E GK AS+AK + + A +T + E +GG G + D+ V K
Sbjct: 326 ARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEK 374
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 173/344 (50%), Gaps = 7/344 (2%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGL 105
L Q + + R+ AEKEL PI A+ ++ FP + K+G L + A + + G GL
Sbjct: 6 LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65
Query: 106 CITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWA 165
A+A+ EI+R S + V++SL + I ++GS+EQKQ ++ I +A
Sbjct: 66 DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125
Query: 166 LTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILA---RNTTTKQINAF 222
L+EP GSDA A TTA W+L G K W+ N+ A V+ A R K I+AF
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAF 185
Query: 223 IVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV--PGFKSFQDTITTLSISR 280
+V PGLT K E+K+G+R +++ ++ +P + + PG F+ + TL + R
Sbjct: 186 LVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGM-GFKIAMQTLDMGR 244
Query: 281 LMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVC 340
+ +A Q++GIA D Y R FGAP Q+ Q KLA M +++ L WR
Sbjct: 245 IGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAA 304
Query: 341 NLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDF 384
L ++ K A++AK + A ++LGG G T+
Sbjct: 305 MLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEM 348
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 184/348 (52%), Gaps = 12/348 (3%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGL 105
LT E++ + VR A + L P+ EY KAE+P+ + L L + T + +G GL
Sbjct: 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGL 62
Query: 106 CITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWA 165
A+AL E+A D S + + V S L + ++GSE QK++YL +A+ + I ++
Sbjct: 63 DSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFC 122
Query: 166 LTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVK 225
LTEP GSDA +LR A +V+GG++L G K W+ ++ A L V++AR T K I+AF+V+
Sbjct: 123 LTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMAR--TEKGISAFLVE 180
Query: 226 KHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV-PGFKSFQDTITTLSISRLMVA 284
K PGL+ + E K+GL +V L+ VFVP+E+ + + + L R+ VA
Sbjct: 181 KGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVA 240
Query: 285 WQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNI---QAMILAGWRVCN 341
Q++GIA G +++ Y ER+QFG Q K+A M I +A++L R +
Sbjct: 241 AQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKD 300
Query: 342 LYEDGKMTAGHASLAKGWITSRA-RETVALGRELLGGNGISTDFHVAK 388
E + A A L RE V ++LGG G D+ V +
Sbjct: 301 RGERFTLEASAAKLFASAAAVEVTREAV----QVLGGYGYHRDYRVER 344
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 182/352 (51%), Gaps = 6/352 (1%)
Query: 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYG 101
D LT E++ ++ R A++ + P+ EY EK E P+ VI KL + + I + YG
Sbjct: 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 102 CPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTI 161
GL + + E+A + + I + S L + + G+EEQK+++L + + +
Sbjct: 61 GMGLKMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 162 ASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILAR---NTTTKQ 218
A++AL+EP GSDA+AL+T A + ++L G K W+ N A+ +V+ A K
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKG 179
Query: 219 INAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV-PGFKSFQDTITTLS 277
+ A +V++ PG A KI K+G R +++ ++V VP E+R+ + F+ + TL+
Sbjct: 180 VVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN 239
Query: 278 ISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGW 337
+R+ VA S+G+A D +Y ER+ FG P A FQ Q KL ML I+ + +
Sbjct: 240 KTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTY 299
Query: 338 RVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKI 389
L + G A +++AK + + A E ++ GG G +F V K+
Sbjct: 300 YAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKL 351
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 182/358 (50%), Gaps = 21/358 (5%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQ-VIPKLGALNIAAGTI-KGYGCPG 104
L+ E Q ++K+VR K++ P ++ + FP++ + +G L I + YG G
Sbjct: 5 LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64
Query: 105 L--CITGAAVALAEIARVDVSCSSFILVHSSLAML----TIAQYGSEEQKQKYLPSMAQL 158
+ A + EIAR SS + V ++ +L TI YGSE K+KY+P ++
Sbjct: 65 MDQGWLAAMIVTEEIAR----GSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSA 120
Query: 159 KTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILA---RNTT 215
+ + + +TEPD GSD A+ +TA W+L G K W+ N+ AD+L+ A +
Sbjct: 121 EFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAG 180
Query: 216 TKQINAFIVK-KHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV--PGFKSFQDT 272
++ ++AF+++ ++ PG+ + +E K+G G++ L NV VP E+ + PG +
Sbjct: 181 SRGLSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPG-DGARIV 238
Query: 273 ITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAM 332
+L+ +RL A +G+A D +Y ER+QFG P FQ+ Q +AQM ++A
Sbjct: 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAA 298
Query: 333 ILAGWRVCNLYEDGKMTAG-HASLAKGWITSRARETVALGRELLGGNGISTDFHVAKI 389
L ++ ++G++ G ++AK + +LG G ST++ VA+
Sbjct: 299 RLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARF 356
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 9/349 (2%)
Query: 49 SEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCI 107
+EE+ + RE + E+AP AE FP+ ++ KL + + + YG GL
Sbjct: 9 AEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLST 68
Query: 108 TGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALT 167
A + IA D + + + H+SLA I GSE QK+ +LP +A + + +W LT
Sbjct: 69 RLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLT 128
Query: 168 EPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILAR-------NTTTKQIN 220
EP GSDA+AL+T A KVEGGW L G K+++ + A + V++AR + I+
Sbjct: 129 EPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGIS 188
Query: 221 AFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV-PGFKSFQDTITTLSIS 279
AF + GL + E K+GL ++L+++FVP+E + K F D + L
Sbjct: 189 AFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGG 248
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRV 339
R+ +A ++G+ D Y R+ FG P A F+ KLA+ ++A L +
Sbjct: 249 RIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKA 308
Query: 340 CNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388
L + G+ A+ AK + + A + ++LGG G D+ V +
Sbjct: 309 AELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVER 357
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 170/355 (47%), Gaps = 15/355 (4%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFP-----FQVIPKLGALNIAAGTIKGYG 101
L+ E++ +R+ + + ++ LAP E EF ++ + LG L I A YG
Sbjct: 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPV--QYG 70
Query: 102 CPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTI 161
GL + + EI+R + HS+L + + + G+E QK+KYLP + + I
Sbjct: 71 GSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYI 130
Query: 162 ASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT-----TT 216
+ A++EP+ GSD +++ A K +IL G K W+ N AD+L++ A+ +
Sbjct: 131 GALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPAS 190
Query: 217 KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF--KSFQDTIT 274
+ I AFIV+K PG + +K +K+G+R +++ ++ +P + + G K ++
Sbjct: 191 RGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAAN-ILGHENKGVYVLMS 249
Query: 275 TLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMIL 334
L + RL++A +G+ V D YL R+ FG FQ+ Q K+A M + A
Sbjct: 250 GLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQ 309
Query: 335 AGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKI 389
+ V ++G TA + + A + G + GGNG DF + +
Sbjct: 310 YVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRF 364
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 174/351 (49%), Gaps = 9/351 (2%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIK----GYGC 102
LT +Q K + EK+LAP V E K + ++I +L +L I + G G
Sbjct: 5 LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64
Query: 103 PGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIA 162
G + +A+ E+A+ D + + SL I Q+G+E QK+K+L + + +
Sbjct: 65 DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124
Query: 163 SWALTEPDYGSDASALRTTATKVEGG-WILEGQKRWVGNSTFADLLVILARNTTTK---Q 218
++ LTEP+ G+DAS +T ATK + G + L G K ++ N AD+ ++ A +K
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184
Query: 219 INAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV-PGFKSFQDTITTLS 277
I AFI++ PG T K E+K+G+ Q +++ ++V VP E+ + K F+ + TL
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLD 244
Query: 278 ISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGW 337
R+ VA Q++GIA Y +R QFG P FQ KLA M I+A +
Sbjct: 245 GGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVY 304
Query: 338 RVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388
+ ++GK A++AK + A ++ GG G S ++ VA+
Sbjct: 305 KAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVAR 355
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 180/373 (48%), Gaps = 35/373 (9%)
Query: 52 QAIRKKVRECAEKELAPIVAEYWEKAEFPFQV--IPKLGALNIAAGTIK----GYGCPGL 105
+ I + R E+E+ P++ E E E V + K G L + A + G P +
Sbjct: 33 KEIARTTRTFVEREVLPLL-ERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKV 91
Query: 106 CITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWA 165
T A L+ V+ + H+S+ L + +G+EEQK+KYLP +A + IA++
Sbjct: 92 ISTVVAEELSGSGGFSVTYGA----HTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYC 147
Query: 166 LTEPDYGSDASALRTTATKVEGG--WILEGQKRWVGNSTFADLLVILARNTTTKQINAFI 223
LTEP GSDA A +T AT E G +IL G K+W+ N+ FA L + A+ + AF+
Sbjct: 148 LTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAK-VDGEHFTAFL 206
Query: 224 VKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLM 282
V++ PGL+ E K+G++ V+L++V VP E+ + K + L++ R
Sbjct: 207 VERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYK 266
Query: 283 VAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNL 342
+ ++G A ++ +Y +R QFG P F + QQKL +M I A A +R L
Sbjct: 267 LGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGL 326
Query: 343 YED---GK-----MTAG------HASLAKGWITSRARETVALGRELLGGNGISTDFHV-- 386
++ GK + AG AS+ K + V G ++ GG G S ++ +
Sbjct: 327 IDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIER 386
Query: 387 ----AKINSLLTG 395
A+IN + G
Sbjct: 387 AYRDARINRIFEG 399
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 184/383 (48%), Gaps = 40/383 (10%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFP--FQVIPKLGALNIAAGTI-KGYGCP 103
+SE + I K + E+ P + EY E+ EF +++ + G L + + + YG
Sbjct: 33 FSSEHKXIAKTTEDFIVNEVLPEL-EYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 104 GLCITGAAVALAEIARVDVSCSSFILVHSS---LAMLTIAQYGSEEQKQKYLPSMAQLKT 160
GL +A+ + +R F + H + + L I +G+EEQK+KYLP +A +
Sbjct: 92 GLDKVSSALIAEKFSR----AGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEK 147
Query: 161 IASWALTEPDYGSDASALRTTAT-KVEG-GWILEGQKRWVGNSTFADLLVILARNTTTKQ 218
+A++ALTEP GSDA +TTA EG ++L G+K+W+ NS FAD+ ++ A+ +
Sbjct: 148 LAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAK-IDGEH 206
Query: 219 INAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLS 277
+AFIV+K G++ + E K G++ ++L++ VP E+ + K L+
Sbjct: 207 FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILN 266
Query: 278 ISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGW 337
I R + ++G A ++ +Y +R+QF P A F + Q+KLA A + +
Sbjct: 267 IGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANXAAKTYAAESSVY 326
Query: 338 RVCNLYE------------DGKMTAG-------HASLAKGWITSRARETVALGRELLGGN 378
R L+E DGK A SL K + + TV G ++ GG
Sbjct: 327 RTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGY 386
Query: 379 GISTDFHV------AKINSLLTG 395
G ++ + ++IN + G
Sbjct: 387 GFXAEYEIERXYRDSRINRIFEG 409
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 177/370 (47%), Gaps = 21/370 (5%)
Query: 33 PPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNI 92
P C +F+ LT +++ + R+ A +E+ P+ AEY E+P ++ + L +
Sbjct: 4 PQCEPGSGFSFE--LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGL 61
Query: 93 AAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQY-----GSEE 146
I + +G GL I + + E+A C+ V +++ T+ Q G+ +
Sbjct: 62 MNTHIPESFGGLGLGIIDSCLITEELA---YGCTG---VQTAIEANTLGQVPLIIGGNYQ 115
Query: 147 QKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADL 206
Q++KYL M + + ++ +TEP GSD + ++T A K +I+ GQK W+ N A+
Sbjct: 116 QQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANW 175
Query: 207 LVILARNT------TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDE 260
+LAR+ +K FIV+ PG+ + E +G R ++ ++V VP E
Sbjct: 176 YFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKE 235
Query: 261 DRVPGFKS-FQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQ 319
+ + G + F+ + T +R VA ++G+A D +Y +ERK FG A Q
Sbjct: 236 NVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGIS 295
Query: 320 QKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNG 379
LA M ++ L+ R + G+ +AS+AK + A + ++ GGNG
Sbjct: 296 FLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNG 355
Query: 380 ISTDFHVAKI 389
+T++ V K+
Sbjct: 356 FNTEYPVEKL 365
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 171/357 (47%), Gaps = 9/357 (2%)
Query: 41 INFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGY 100
+ F T +++ + R+ A +E+ P+ AEY + E+P +I + L + I
Sbjct: 10 LGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIP-E 68
Query: 101 GCPGLCI-TGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLK 159
C GL + T A ++E + + +SL + I G+++QK+KYL M +
Sbjct: 69 NCGGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEP 128
Query: 160 TIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT----- 214
+ ++ +TEP GSD + ++T A K +I+ GQK W+ N A+ +LAR+
Sbjct: 129 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 188
Query: 215 -TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKS-FQDT 272
K FIV+ PG+ + E +G R ++ ++V VP E+ + G + F+
Sbjct: 189 PANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVA 248
Query: 273 ITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAM 332
+ +R +VA ++G+A D +Y +ERK FG Q LA+M ++
Sbjct: 249 MGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELA 308
Query: 333 ILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKI 389
++ R + G+ +AS+AK + A + ++LGGNG +T++ V K+
Sbjct: 309 RMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKL 365
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 171/357 (47%), Gaps = 9/357 (2%)
Query: 41 INFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGY 100
+ F T +++ + R+ A +E+ P+ AEY + E+P +I + L + I
Sbjct: 35 LGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIP-E 93
Query: 101 GCPGLCI-TGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLK 159
C GL + T A ++E + + +SL + I G+++QK+KYL M +
Sbjct: 94 NCGGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEP 153
Query: 160 TIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT----- 214
+ ++ +TEP GSD + ++T A K +I+ GQK W+ N A+ +LAR+
Sbjct: 154 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 213
Query: 215 -TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKS-FQDT 272
K FIV+ PG+ + E +G R ++ ++V VP E+ + G + F+
Sbjct: 214 PANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVA 273
Query: 273 ITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAM 332
+ +R +VA ++G+A D +Y +ERK FG Q LA+M ++
Sbjct: 274 MGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELA 333
Query: 333 ILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKI 389
++ R + G+ +AS+AK + A + ++LGGNG +T++ V K+
Sbjct: 334 RMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKL 390
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 12/360 (3%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIK-GYGCPGL 105
L E++ +K + A +E+AP +AE+ +K FP V+ K L I+ G GL
Sbjct: 19 LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGL 78
Query: 106 CITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWA 165
+V +A S +++I +H+ A + I +G+EEQ+ K+ P + ++ AS+
Sbjct: 79 SRLDTSVIFEALATGCTSTTAYISIHNMCAWM-IDSFGNEEQRHKFCPPLCTMEKFASYC 137
Query: 166 LTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARN--TTTKQINAFI 223
LTEP GSDA++L T+A K +IL G K ++ + +D+ V++ R K I+ +
Sbjct: 138 LTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIV 197
Query: 224 VKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPG-FKSFQDTITTLSISRLM 282
V+K PGL+ K E K+G V+ ++ VP +R+ + F + L+ R+
Sbjct: 198 VEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRIN 257
Query: 283 VAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGN-IQAMILAGWRVCN 341
+A S+G A + +L RKQFG P A+ Q Q LA M + A ++
Sbjct: 258 IASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVA 317
Query: 342 LYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHV------AKINSLLTG 395
L E+ K S+AK + T ++ GG G D+ V ++++ +L G
Sbjct: 318 LQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEG 377
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 170/357 (47%), Gaps = 9/357 (2%)
Query: 41 INFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGY 100
+ F T +++ + R+ A +E+ P+ AEY + E+P +I + L + I
Sbjct: 10 LGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIP-E 68
Query: 101 GCPGLCI-TGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLK 159
C GL + T A ++E + + +SL + I G+++QK+KYL M +
Sbjct: 69 NCGGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEP 128
Query: 160 TIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT----- 214
+ ++ +TEP GSD + ++T A K +I+ GQK W+ N A+ +LAR+
Sbjct: 129 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 188
Query: 215 -TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKS-FQDT 272
K FIV+ PG+ + E +G R ++ ++V VP E+ + G + F+
Sbjct: 189 PANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVA 248
Query: 273 ITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAM 332
+ R +VA ++G+A D +Y +ERK FG Q LA+M ++
Sbjct: 249 MGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELA 308
Query: 333 ILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKI 389
++ R + G+ +AS+AK + A + ++LGGNG +T++ V K+
Sbjct: 309 RMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKL 365
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 173/360 (48%), Gaps = 19/360 (5%)
Query: 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYG 101
F LT +++ + R+ A +E+ P+ AEY E+P ++ + L + I + +G
Sbjct: 2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFG 61
Query: 102 CPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQY-----GSEEQKQKYLPSMA 156
GL I + + E+A C+ V +++ T+ Q G+ +Q++KYL M
Sbjct: 62 GLGLGIIDSCLITEELA---YGCTG---VQTAIEANTLGQVPLIIGGNYQQQKKYLGRMT 115
Query: 157 QLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT-- 214
+ + ++ +TEP GSD + ++T A K +I+ GQK W+ N A+ +LAR+
Sbjct: 116 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPD 175
Query: 215 ----TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKS-F 269
+K FIV+ PG+ + E +G R ++ ++V VP E+ + G + F
Sbjct: 176 PKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGF 235
Query: 270 QDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNI 329
+ + T +R VA ++G+A D +Y +ERK FG A Q LA M +
Sbjct: 236 KIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKV 295
Query: 330 QAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKI 389
+ L+ R + G+ +AS+AK + A + ++ GGNG +T++ V K+
Sbjct: 296 ELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKL 355
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 159/349 (45%), Gaps = 8/349 (2%)
Query: 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGL 105
L E R R+ EKE P ++ ++ P K+G + + YG
Sbjct: 10 LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNA 69
Query: 106 CITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWA 165
+ V E+ +V S I +H+ + IA YG+EEQKQK+LP + I + A
Sbjct: 70 DFAYSVVINEELEKVGSSLVG-IGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIA 128
Query: 166 LTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTT-----KQIN 220
+TEP GSD + + TTA K +I+ GQK ++ N ADL+V+ + + I+
Sbjct: 129 MTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGIS 188
Query: 221 AFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV-PGFKSFQDTITTLSIS 279
+V++ PG T + K+GL ++ ++ VP + + K F + L
Sbjct: 189 LLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQE 248
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRV 339
RL+VA + A ++ + +Y+ +R FG + FQ Q +LA+M I RV
Sbjct: 249 RLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRV 308
Query: 340 CNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388
+ GK S+AK WIT A+ A +L GG G ++ +A+
Sbjct: 309 IEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIAR 357
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 167/360 (46%), Gaps = 7/360 (1%)
Query: 34 PCASDYYINFDGLLTSEEQA-IRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNI 92
P + + + D LL S+E A + + RE A+K L PIV + + +P V +LGA +
Sbjct: 2 PGSMIHPMAVDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGL 61
Query: 93 AA-GTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKY 151
+ + +G G L EIA S + + VHS L+ + +G+EEQK+++
Sbjct: 62 LSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRW 120
Query: 152 LPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILA 211
LP M + I +++L+EP GSDA+ALR AT +GG+++ G K W+ + AD + A
Sbjct: 121 LPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFA 180
Query: 212 R-NTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPG--FKS 268
R ++ ++ F+V PGL+ K E K+GL V N + D DR G +
Sbjct: 181 RTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARI-DADRRIGEEGQG 239
Query: 269 FQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGN 328
Q + L RL +A + G+A D Y ER FG Q LA M
Sbjct: 240 LQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAA 299
Query: 329 IQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388
+ + G+ + AS+AK T A + ++ GG G + D+ V +
Sbjct: 300 VATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVER 359
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 136/287 (47%), Gaps = 26/287 (9%)
Query: 64 KELAPIVAEYWEKAEFP-------------FQVIPKLGALNIAAGTIKGYGCPGLCITGA 110
KEL V+ ++E+ P +Q + +LGA + + G GLC T
Sbjct: 35 KELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPS--ELGGVGLCNTQY 92
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPD 170
A + + D+ + H S+ I +G++ QK+KYLP +A +T+A++ LTEP
Sbjct: 93 ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPS 152
Query: 171 YGSDASALRTTATKVEGG--WILEGQKRWVGNSTFADLLVILARNTTT--------KQIN 220
GSDA+++RT+A G + L G K W+ N AD+ + A+ T ++I
Sbjct: 153 SGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKIT 212
Query: 221 AFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKS-FQDTITTLSIS 279
AF+V++ G+T E K+G++ +V V VP E+ + S F+ + L+
Sbjct: 213 AFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNG 272
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQML 326
R +A G G+ + R QFG F + Q+KLA+M+
Sbjct: 273 RFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMV 319
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 136/287 (47%), Gaps = 26/287 (9%)
Query: 64 KELAPIVAEYWEKAEFP-------------FQVIPKLGALNIAAGTIKGYGCPGLCITGA 110
KEL V+ ++E+ P +Q + +LGA + + G GLC T
Sbjct: 55 KELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPS--ELGGVGLCNTQY 112
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPD 170
A + + D+ + H S+ I +G++ QK+KYLP +A +T+A++ LTEP
Sbjct: 113 ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPS 172
Query: 171 YGSDASALRTTATKVEGG--WILEGQKRWVGNSTFADLLVILARNTTT--------KQIN 220
GSDA+++RT+A G + L G K W+ N AD+ + A+ T ++I
Sbjct: 173 SGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKIT 232
Query: 221 AFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKS-FQDTITTLSIS 279
AF+V++ G+T E K+G++ +V V VP E+ + S F+ + L+
Sbjct: 233 AFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNG 292
Query: 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQML 326
R +A G G+ + R QFG F + Q+KLA+M+
Sbjct: 293 RFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMV 339
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 15/300 (5%)
Query: 36 ASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAG 95
A+ + + + T E +A+ + R E+E+AP +AE+ E IP+ LN A
Sbjct: 18 AARFVVAPEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGE-----IPRDLHLNAAEV 72
Query: 96 TIKGYGCP-------GLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQK 148
+ G G P G I A V A +A + L +A+ IA GS+
Sbjct: 73 GLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALI 132
Query: 149 QKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLV 208
++Y+ K I S +TEP GSD + LRT A + +++ G K ++ + AD +
Sbjct: 133 ERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVT 192
Query: 209 ILARNTTTKQ--INAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF 266
R ++ ++ K++PG ++ +K+G R ++ +V VP ++ V
Sbjct: 193 TAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAE 252
Query: 267 KS-FQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQM 325
S F + RL +A Q+ A D+ + ER+ FG P QI + KLA+M
Sbjct: 253 NSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEM 312
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 119/293 (40%), Gaps = 25/293 (8%)
Query: 48 TSEEQAIRKKVRECAEKELAPIVAEYWEKA-EFPFQVIPKLGALNIAAGTIKGYGCPGLC 106
T+E +A+RK VR AE+E+ P E WE+A E P ++ K L + G G P
Sbjct: 27 TAEREALRKTVRAFAEREVLPHAHE-WERAGEIPRELHRKAAELGLL-----GAGFPEDA 80
Query: 107 ITGAAVALAEIARVDVSCSSFIL------VHSSLAMLTIA-----QYGSEEQKQKYLPSM 155
+ V C V++SL IA G + Y+
Sbjct: 81 GGSGGDGADPV----VICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPT 136
Query: 156 AQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILAR--N 213
+ + I + A+TEP GSD LRT A +++ G K ++ + AD +V AR
Sbjct: 137 LRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGG 196
Query: 214 TTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKS-FQDT 272
++ +V K PG T+ +K+G R ++ +V VP + V + F
Sbjct: 197 PGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQI 256
Query: 273 ITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQM 325
R+ +A Q+ A D+ + R FG P + Q Q LA M
Sbjct: 257 AAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGM 309
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 113/280 (40%), Gaps = 14/280 (5%)
Query: 71 AEYWEKAEFPFQVIPKLGALNIAAGTIKG-YGCPGLCITGAAVALAEIARVDVSCSSF-- 127
AE+ E P ++ +LGA + + +G GL G+ A V CSS
Sbjct: 17 AEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGL---GSRENGEFTAHVGSLCSSLRS 73
Query: 128 ILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEG 187
++ +A T+ + G Q+ +L + K +A+ +E GSD SA+RT
Sbjct: 74 VMTSQGMAAWTVQRLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGD 132
Query: 188 GWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQN 247
+++G K W + +AD LV+ +V PG+ ++ G R +
Sbjct: 133 TAVVDGHKVWTTAAAYADHLVVFGLQEDGSG-AVVVVPADTPGVRVERVPKPSGCRAAGH 191
Query: 248 GDVLLKNVFVPDEDRVPGFKSFQDTIT--TLSISRLMVAWQSIGIAMGVYDMCHRYLMER 305
D+ L V VP + G + + +L+ R VAW +GI + R
Sbjct: 192 ADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTR 251
Query: 306 KQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYED 345
+QFG P Q+ +A + Q I A RVC D
Sbjct: 252 EQFGRPLGDHQLVAGHIADLWTAEQ--IAA--RVCEYASD 287
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 136 MLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYG-SDASALRTTATKVEGGW-ILEG 193
M + +YGS+EQK+ +L + + +++ +TEPD SDA+ + TA VEG ++ G
Sbjct: 118 MEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAV-VEGDEVVING 176
Query: 194 QKRWVGNSTFADLLVILARNTTTKQINAF------IVKKHAPGLTATKIENKIGLRIVQN 247
+K W D VI+ T + + +V PG+T ++ +G
Sbjct: 177 RKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPG 236
Query: 248 GD--VLLKNVFVPDEDRVPG-FKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLME 304
G V NV +P + + G K F+ L R+ A + IG+A + R ++
Sbjct: 237 GHGVVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLD 296
Query: 305 RKQFGAPSATFQITQQKLAQ---MLGNIQAMIL-AGWRVCNLYEDGKMTAGHASLAKGWI 360
R FG P ++++A + + ++L A W + + G ++A S K
Sbjct: 297 RTAFGKPLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSA--VSEIKVAA 354
Query: 361 TSRARETVALGRELLGGNGISTDFHVA 387
+ A++ + + ++ GG G+S DF +A
Sbjct: 355 PNMAQQVIDMAIQIHGGGGLSNDFPLA 381
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 130/319 (40%), Gaps = 55/319 (17%)
Query: 115 AEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSD 174
A + R V +F +H + + I G+++Q++K+LP +++ I +A TE +GS+
Sbjct: 105 ATMLRRYVDEPAFTDLHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSN 164
Query: 175 ASALRTTAT-------KVEGGWILEGQKRWVGN----STFADLLVILARNTTTKQINAFI 223
L TTAT V L K W G ST A + L + +N FI
Sbjct: 165 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFI 224
Query: 224 VK-------KHAPGLTATKIENKIG---LRIVQNGDVLLKNVFVPDED---RVPGF---- 266
V+ K PG+T I K G + NG + +V +P + RV
Sbjct: 225 VQLRSLEDHKPLPGVTVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEG 284
Query: 267 KSFQDTI-------TTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSA------ 313
K Q I T + + + +VA S+ ++ V + RY R+QFG+ +
Sbjct: 285 KYVQSDIPRQLLYGTMVYVRQSIVADASLAMSRAVC-IATRYSAVRRQFGSQNGGQETQV 343
Query: 314 -TFQITQQKLAQMLGNIQAMILAGWRVCNLYED----------GKMTAGHASLA--KGWI 360
++ Q +L +L + A G + LY D + HA A K
Sbjct: 344 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLAANDFSTLPEAHACTAGLKSLT 403
Query: 361 TSRARETVALGRELLGGNG 379
TS + + R+L GG+G
Sbjct: 404 TSATADGIEECRKLCGGHG 422
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 15/179 (8%)
Query: 136 MLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYG-SDASALRTTATKVEGGWILEGQ 194
M + YGSEEQK+++L + Q + + +TEPD SDA+ + + + E +++ G+
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGK 183
Query: 195 KRW---VGNSTFADLLVILARNTTT-----KQINAFIVKKHAPGLTATKIENKIGLRIVQ 246
K W GN + ++L R T KQ + +V + PG+ + + G
Sbjct: 184 KWWSSGAGNPK-CKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNF 242
Query: 247 NG---DVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIA-MGVYDMCHR 300
+G ++ V VP + + G + F+ + L R+ +++G+A + MC R
Sbjct: 243 HGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCER 301
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 127/308 (41%), Gaps = 55/308 (17%)
Query: 126 SFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTAT-- 183
+++ +H + + I G+EEQ++K+L +++ I +A TE +GS+ L TTAT
Sbjct: 97 AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLD 156
Query: 184 -KVEGGWIL----EGQKRWVGN----STFADLLVILARNTTTKQINAFIVK-----KHA- 228
K + I K W G ST A + L N I+ FIV+ H+
Sbjct: 157 PKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSP 216
Query: 229 -PGLTATKIENKIG---LRIVQNGDVLLKNVFVPDE-------------DRVPGFKSFQD 271
P +T I K+G + NG ++ +V +P + + VP Q
Sbjct: 217 LPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQL 276
Query: 272 TITTL-SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSA-------TFQITQQKLA 323
T+ + + +VA S ++ V + RY R+QFGA + ++ Q +L
Sbjct: 277 VYGTMVYVRQTIVADASNALSRAVC-IATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLF 335
Query: 324 QMLGNIQAMILAGWRVCNLYED----------GKMTAGHASLA--KGWITSRARETVALG 371
+L + A G + LY D + HA A K T+ + +
Sbjct: 336 PLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEEC 395
Query: 372 RELLGGNG 379
R+L GG+G
Sbjct: 396 RKLCGGHG 403
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 15/233 (6%)
Query: 100 YGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLK 159
YG G A + EIA D S H + A + I GS+EQ++ +AQ
Sbjct: 86 YGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPM-IELIGSQEQEEHLYTQIAQNN 144
Query: 160 TIASWALTEPDYGSDASALRTTATKVE-GGWILEGQKRWVGNSTFADLLVILA--RNTTT 216
A +E + S + +AT E GG++L G K + + +DLL + ++ +
Sbjct: 145 WWTGNASSENN--SHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSP 202
Query: 217 KQ--INAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFV-PDE------DRVPGFK 267
+Q I A + G+T IG+R +G NV V PDE V F
Sbjct: 203 QQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFI 262
Query: 268 SFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQ 320
+ I++L+ A +GIA G D Y + + P+ Q T+
Sbjct: 263 QSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATED 315
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 45/283 (15%)
Query: 44 DGLLTSEEQAIRKKVRECAEKELAPIVAEYWE---KAEFPFQVIPKLGALNIAAGTIKG- 99
D L++ ++ + R A L P Y + + FQ A ++AG +KG
Sbjct: 4 DFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQ 63
Query: 100 ----YGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM 155
+G G + +A+ + E V+ S ++ + + L + I + + P +
Sbjct: 64 ISPAHGGTGGTLIESAILVEECYSVEPS-AALTIFATGLGLTPINLAAGPQHAEFLAPFL 122
Query: 156 A-QLKTIASWALTEPDYGSDASALRT------TATKVEGG-WILEGQKRWVGNST----- 202
+ + +AS +EP G A+AL T ++EG W++ G+K W N
Sbjct: 123 SGEGSPLASLVFSEP--GGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFK 180
Query: 203 FADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDV---------LLK 253
DL ++ R+ TT P ENK+ + +V D+ +L+
Sbjct: 181 GCDLACVVCRDATT------------PLEEGQDPENKVMIILVTRADLDRNGEGSFEVLR 228
Query: 254 NVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYD 296
+V P V G + + + L A Q +A G +D
Sbjct: 229 HVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFD 271
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 187 GGWILEGQKRWVGNSTFADLLVILARNTTTK---QINAFIVKKHAPGLTATKIENKIGLR 243
GGW+L G+K V + VI AR T ++ + +V + PG T + +G+R
Sbjct: 161 GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMR 220
Query: 244 IVQNGDVLLKNVFVPDED---RVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHR 300
D++ + +P + R P + ++S + V +G+A YD
Sbjct: 221 ASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVA 280
Query: 301 YLMERKQ 307
L R +
Sbjct: 281 ALERRPE 287
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 130 VHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATK----- 184
+H + + T+ + EQ++++ L+ ++A TE +G+ L TTAT
Sbjct: 102 LHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQ 161
Query: 185 --VEGGWILEGQKRWVG----NSTFADLLVILARNTTTKQINAFIV-------KKHAPGL 231
+ + K W G S A +L L ++AF+V K PG+
Sbjct: 162 EFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGI 221
Query: 232 TATKIENKIGLRIVQNGDVLLKNVFVPDED 261
T I K G + NG + + N +P E+
Sbjct: 222 TVGDIGPKFGYEEMDNGYLKMDNYRIPREN 251
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM--AQLKTIASWALTE 168
++ L E+ V+ +S +V ++L ++ + S ++K+L + + +AS +E
Sbjct: 76 SIILEELFAVE-PATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSE 134
Query: 169 PDYGSD-----ASALRTTATKVEGGWILEGQKRWVGNS-----TFADLLVILAR 212
P+ ++ L+TTA KV W++ G+K W NS ADL ++ R
Sbjct: 135 PNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCR 188
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM--AQLKTIASWALTE 168
++ L E+ V+ +S +V ++L ++ + S ++K+L + + +AS +E
Sbjct: 76 SIILEELFAVE-PATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSE 134
Query: 169 PDYGSD-----ASALRTTATKVEGGWILEGQKRWVGNS-----TFADLLVILAR 212
P+ ++ L+TTA KV W++ G+K W NS ADL ++ R
Sbjct: 135 PNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCR 188
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM--AQLKTIASWALTE 168
++ L E+ V+ +S +V ++L ++ + S ++K+L + + +AS +E
Sbjct: 77 SIILEELFAVE-PATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSE 135
Query: 169 PDYGSD-----ASALRTTATKVEGGWILEGQKRWVGNS-----TFADLLVILAR 212
P+ ++ L+TTA KV W++ G+K W NS ADL ++ R
Sbjct: 136 PNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCR 189
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM--AQLKTIASWALTE 168
++ L E+ V+ +S +V ++L ++ + S ++K+L + + +AS +E
Sbjct: 77 SIILEELFAVE-PATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSE 135
Query: 169 PDYGSD-----ASALRTTATKVEGGWILEGQKRWVGNS-----TFADLLVILAR 212
P+ ++ L+TTA KV W++ G+K W NS ADL ++ R
Sbjct: 136 PNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCR 189
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM--AQLKTIASWALTE 168
++ L E+ V+ +S +V ++L ++ + S ++K+L + + +AS +E
Sbjct: 76 SIILEELFAVE-PATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSE 134
Query: 169 PDYGSD-----ASALRTTATKVEGGWILEGQKRWVGNS-----TFADLLVILAR 212
P+ ++ L+TTA KV W++ G+K W NS ADL ++ R
Sbjct: 135 PNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCR 188
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM--AQLKTIASWALTE 168
++ L E+ V+ +S +V ++L ++ + S ++K+L + + +AS +E
Sbjct: 77 SIILEELFAVE-PATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSE 135
Query: 169 PDYGSD-----ASALRTTATKVEGGWILEGQKRWVGNS-----TFADLLVILAR 212
P+ ++ L+TTA KV W++ G+K W NS ADL ++ R
Sbjct: 136 PNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCR 189
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 111 AVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM--AQLKTIASWALTE 168
++ L E+ V+ +S +V ++L + + S ++K+L + + +AS +E
Sbjct: 77 SIILEELFAVE-PATSITIVATALGLXPVILCDSPSLQEKFLKPFISGEGEPLASLXHSE 135
Query: 169 PDYGSD-----ASALRTTATKVEGGWILEGQKRWVGNS-----TFADLLVILAR 212
P+ ++ L+TTA KV W++ G+K W NS ADL ++ R
Sbjct: 136 PNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCR 189
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 17/176 (9%)
Query: 79 FPFQVIPKLGALNIAAGTIKG-YGCPGLC-ITGAAVALAEIARVDVSCSS--FILVHSSL 134
FP + + L + T+ G GL + A AL +A D S + + + L
Sbjct: 40 FPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGL 99
Query: 135 AMLTIAQYGSEEQK---QKYLPSMAQLKTIASWALTEPDYGSDASALRTT-ATKVEGGWI 190
+ Q+G+ + ++ L +MA+ + AL DA + T + GGW+
Sbjct: 100 TLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGAL------KDAPGVVTELHSDGAGGWL 153
Query: 191 LEGQKRWVGNSTFADLLVILARNTTTKQ---INAFIVKKHAPGLTATKIENKIGLR 243
L G+K V + A + A+ + +V + APGLT + +G+R
Sbjct: 154 LSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMR 209
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 102/274 (37%), Gaps = 49/274 (17%)
Query: 144 SEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVE-GGWILEGQKRWVGNST 202
S+ LP + + +TE GSD + T A ++E G + L G K W +
Sbjct: 162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WFFSVP 220
Query: 203 FADLLVILARNTTTKQINAFIVKKHAP-----GLTATKIENKIGLRIVQNGDVLLKNVFV 257
+D ++LA+ T ++ F V + P + ++++K+G R + +V
Sbjct: 221 QSDAHLVLAQ--TAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV------- 271
Query: 258 PDEDRVPGFKSFQDTITTL---------------SISRLMVAWQSIGIAMGVYDMCHRYL 302
FQD I L ++R A S + + + +
Sbjct: 272 ----------EFQDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHA 321
Query: 303 MERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHA-------SL 355
+R FG P + + L++M ++ +R+ + D + A A
Sbjct: 322 HQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAW-DRRADAKEALWARLFTPA 380
Query: 356 AKGWITSRARETVALGRELLGGNGISTDFHVAKI 389
AK I R VA E+LGG G + + ++
Sbjct: 381 AKFVICKRGMPFVAEAMEVLGGIGYCEESELPRL 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,531,418
Number of Sequences: 62578
Number of extensions: 439264
Number of successful extensions: 1150
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 54
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)