Query 041985
Match_columns 415
No_of_seqs 165 out of 1595
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 1.4E-75 2.9E-80 528.7 25.4 349 44-393 34-387 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 5.8E-73 1.3E-77 503.2 28.6 358 44-402 25-406 (408)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 5.2E-73 1.1E-77 503.8 27.0 354 46-399 40-418 (421)
4 PLN02526 acyl-coenzyme A oxida 100.0 5.2E-66 1.1E-70 512.1 45.6 389 20-410 4-408 (412)
5 KOG0138 Glutaryl-CoA dehydroge 100.0 3.1E-67 6.8E-72 465.4 30.3 397 8-406 18-432 (432)
6 cd01151 GCD Glutaryl-CoA dehyd 100.0 4.4E-64 9.5E-69 495.3 44.6 360 43-403 9-385 (386)
7 cd01157 MCAD Medium chain acyl 100.0 3.8E-61 8.1E-66 473.5 42.0 354 47-401 1-378 (378)
8 PLN02519 isovaleryl-CoA dehydr 100.0 6.9E-61 1.5E-65 474.7 43.1 357 44-400 23-402 (404)
9 PRK12341 putative acyl-CoA deh 100.0 6.9E-61 1.5E-65 471.7 42.5 354 43-400 1-378 (381)
10 TIGR03203 pimD_small pimeloyl- 100.0 4.2E-61 9E-66 471.5 40.4 344 45-393 2-355 (378)
11 PRK03354 crotonobetainyl-CoA d 100.0 7.3E-61 1.6E-65 471.2 42.2 354 43-399 1-376 (380)
12 cd01162 IBD Isobutyryl-CoA deh 100.0 1.1E-60 2.3E-65 469.6 42.2 353 47-400 1-374 (375)
13 cd01156 IVD Isovaleryl-CoA deh 100.0 2.6E-60 5.7E-65 467.2 42.6 347 47-393 2-353 (376)
14 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.5E-60 5.5E-65 466.4 41.1 344 47-393 1-350 (372)
15 PTZ00461 isovaleryl-CoA dehydr 100.0 4.7E-60 1E-64 469.6 43.3 354 45-400 35-407 (410)
16 cd01160 LCAD Long chain acyl-C 100.0 5.2E-60 1.1E-64 464.5 41.3 344 49-393 1-350 (372)
17 cd01161 VLCAD Very long chain 100.0 8.6E-60 1.9E-64 467.8 41.9 356 42-400 22-406 (409)
18 PRK09463 fadE acyl-CoA dehydro 100.0 4E-59 8.7E-64 482.5 41.6 353 10-388 62-444 (777)
19 cd01158 SCAD_SBCAD Short chain 100.0 1.2E-57 2.5E-62 448.1 40.9 345 49-393 1-350 (373)
20 PRK13026 acyl-CoA dehydrogenas 100.0 1.1E-57 2.4E-62 470.1 40.8 336 47-388 78-443 (774)
21 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 6.7E-57 1.4E-61 445.2 39.6 338 51-388 3-366 (394)
22 TIGR03204 pimC_large pimeloyl- 100.0 1.8E-56 3.9E-61 441.4 41.2 352 44-401 1-395 (395)
23 COG1960 CaiA Acyl-CoA dehydrog 100.0 6.8E-56 1.5E-60 438.3 39.4 358 46-403 4-391 (393)
24 PLN02636 acyl-coenzyme A oxida 100.0 8.9E-56 1.9E-60 457.0 39.4 353 42-400 56-485 (686)
25 PLN02876 acyl-CoA dehydrogenas 100.0 1.9E-54 4.1E-59 461.6 41.6 357 45-401 400-819 (822)
26 KOG0137 Very-long-chain acyl-C 100.0 2.5E-56 5.3E-61 428.6 24.2 354 37-393 67-437 (634)
27 cd01152 ACAD_fadE6_17_26 Putat 100.0 1E-54 2.3E-59 427.7 34.7 345 49-400 1-380 (380)
28 cd01153 ACAD_fadE5 Putative ac 100.0 5.6E-54 1.2E-58 425.7 39.0 336 55-395 2-386 (407)
29 PTZ00456 acyl-CoA dehydrogenas 100.0 7.5E-53 1.6E-57 431.5 40.4 350 49-402 58-482 (622)
30 cd01163 DszC Dibenzothiophene 100.0 2.3E-53 4.9E-58 418.0 33.3 334 57-396 2-354 (377)
31 PLN02312 acyl-CoA oxidase 100.0 9.8E-53 2.1E-57 433.4 38.4 352 47-400 60-487 (680)
32 cd01154 AidB Proteins involved 100.0 3.3E-50 7.2E-55 399.2 37.0 326 56-391 35-393 (418)
33 cd01159 NcnH Naphthocyclinone 100.0 3.5E-48 7.5E-53 380.1 30.1 322 58-396 3-349 (370)
34 PRK11561 isovaleryl CoA dehydr 100.0 4.5E-47 9.9E-52 380.8 36.3 311 82-402 90-443 (538)
35 cd00567 ACAD Acyl-CoA dehydrog 100.0 7.6E-47 1.7E-51 364.8 36.6 303 50-395 2-310 (327)
36 PTZ00460 acyl-CoA dehydrogenas 100.0 2.3E-46 5E-51 384.7 30.8 279 122-400 89-431 (646)
37 cd01150 AXO Peroxisomal acyl-C 100.0 7.9E-46 1.7E-50 381.2 29.8 296 106-401 80-445 (610)
38 PTZ00457 acyl-CoA dehydrogenas 100.0 9.3E-44 2E-48 354.5 36.7 273 86-393 58-348 (520)
39 KOG1469 Predicted acyl-CoA deh 100.0 2.1E-45 4.7E-50 321.8 16.5 307 82-388 27-354 (392)
40 PLN02443 acyl-coenzyme A oxida 100.0 4.4E-43 9.6E-48 361.0 31.0 273 128-400 99-440 (664)
41 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 1.9E-34 4E-39 275.4 21.8 324 75-401 74-465 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 100.0 8.7E-27 1.9E-31 232.1 25.5 252 148-408 129-419 (477)
43 KOG0136 Acyl-CoA oxidase [Lipi 99.9 3E-24 6.5E-29 210.4 17.9 276 125-400 108-448 (670)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.8 3.6E-19 7.8E-24 151.8 17.7 133 267-399 2-150 (150)
45 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 3.2E-18 7E-23 138.7 9.8 112 48-159 1-113 (113)
46 COG2368 Aromatic ring hydroxyl 99.6 2.1E-13 4.7E-18 131.2 21.9 255 147-408 132-428 (493)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 4.2E-15 9.1E-20 102.1 6.7 52 163-214 1-52 (52)
48 TIGR02310 HpaB-2 4-hydroxyphen 99.6 4.2E-13 9E-18 133.7 22.7 256 147-408 137-433 (519)
49 PF08028 Acyl-CoA_dh_2: Acyl-C 99.5 5.5E-13 1.2E-17 111.4 14.5 115 281-395 1-125 (134)
50 PF11794 HpaB_N: 4-hydroxyphen 98.9 7.1E-09 1.5E-13 95.0 9.0 117 147-263 124-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 96.9 0.036 7.9E-07 49.5 13.7 98 311-408 43-148 (205)
52 PTZ00457 acyl-CoA dehydrogenas 93.0 2.7 5.9E-05 43.1 14.2 80 308-388 429-509 (520)
53 KOG0137 Very-long-chain acyl-C 90.6 7.3 0.00016 39.8 13.7 95 308-408 533-629 (634)
54 PF14749 Acyl-CoA_ox_N: Acyl-c 88.6 0.5 1.1E-05 38.5 3.5 33 128-160 92-124 (125)
55 PRK09463 fadE acyl-CoA dehydro 47.8 2.1E+02 0.0045 31.2 11.4 94 308-410 559-652 (777)
56 PF12584 TRAPPC10: Trafficking 28.4 1.5E+02 0.0032 24.8 5.4 47 181-237 63-114 (147)
57 PF01726 LexA_DNA_bind: LexA D 27.4 2.1E+02 0.0045 20.2 5.2 50 46-95 3-58 (65)
58 PF05428 CRF-BP: Corticotropin 24.5 62 0.0014 30.3 2.5 14 187-200 114-127 (311)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-75 Score=528.69 Aligned_cols=349 Identities=33% Similarity=0.504 Sum_probs=337.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCC
Q 041985 44 DGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDV 122 (415)
Q Consensus 44 ~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~ 122 (415)
...|+|+++.+++.+++|+++.+.|.+.++|++..+|...++.+.++||+++.+ ++|||.|.+......++|++++.|+
T Consensus 34 l~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~ 113 (398)
T KOG0139|consen 34 LQILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDA 113 (398)
T ss_pred hhhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCc
Confidence 345899999999999999999999999999999999999999999999999977 9999999999999999999999999
Q ss_pred chhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCC
Q 041985 123 SCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNST 202 (415)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~ 202 (415)
++++...+|+.+...+|..||+++||++|+|.+ .|+.+++||+|||+.|||+..+.|+|++++|.|+|||+|+||||+.
T Consensus 114 sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~ 192 (398)
T KOG0139|consen 114 SVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAG 192 (398)
T ss_pred cceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCc
Confidence 999999999999999999999999999888776 6777999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHH
Q 041985 203 FADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSI 278 (415)
Q Consensus 203 ~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~ 278 (415)
.|++++|+|.+++. +++++|+||+|+||+++....+++|+|++.++.+.||||+||++++||+. .|+++.+..|+-
T Consensus 193 ~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~ 272 (398)
T KOG0139|consen 193 EADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNA 272 (398)
T ss_pred ccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCc
Confidence 99999999999654 78999999999999999999999999999999999999999999999996 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 041985 279 SRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKG 358 (415)
Q Consensus 279 ~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~ 358 (415)
+|+.++++.+|+++.|+|.++.|+++|.+||++|.++|.+|++||++.+++|++|+++|++++.-+++.+...+++|+|+
T Consensus 273 gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl 352 (398)
T KOG0139|consen 273 GRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKL 352 (398)
T ss_pred cceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985 359 WITSRARETVALGRELLGGNGISTDFHVAKINSLL 393 (415)
Q Consensus 359 ~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~ 393 (415)
++++.|..+++.|+|++||.||++++|.+|.-|+.
T Consensus 353 ~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDa 387 (398)
T KOG0139|consen 353 YASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDA 387 (398)
T ss_pred hhhhhhhHHHHHHHHHHhcccccccccHHHHhhhc
Confidence 99999999999999999999999999999977664
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.8e-73 Score=503.16 Aligned_cols=358 Identities=30% Similarity=0.455 Sum_probs=345.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCC
Q 041985 44 DGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDV 122 (415)
Q Consensus 44 ~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~ 122 (415)
.+.|+++|+++++.+++|..+++-|.+.+||+.++||.+++++..++||.+..+ +.|||.|++..+.+.+.|+|+.+|.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 466999999999999999999999999999999999999999999999999977 9999999999999999999999999
Q ss_pred chhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCC
Q 041985 123 SCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNST 202 (415)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~ 202 (415)
++...+..|+ ++..++..+|+++||++||++++....+++.|+|||+.|||+.++.|+|++.+|.|+|||+|.||||+.
T Consensus 105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G 183 (408)
T KOG0140|consen 105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG 183 (408)
T ss_pred hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence 9998888886 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC------CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHH
Q 041985 203 FADLLVILARNTTT------KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITT 275 (415)
Q Consensus 203 ~ad~~lv~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~ 275 (415)
+|+|++|+||++++ +++++|+|+.|+||++.......+|.|..++-.|.|+||+||.+|+||.+ .||+..+..
T Consensus 184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~ 263 (408)
T KOG0140|consen 184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG 263 (408)
T ss_pred ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence 99999999999753 56899999999999999999999999999999999999999999999986 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHH
Q 041985 276 LSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASL 355 (415)
Q Consensus 276 ~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~ 355 (415)
|+-+|..+++.++|++++++|++.+|+.+|++||.||+++|.+|.+||||++.++.+|++.+++++.+|++.+....+++
T Consensus 264 fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSi 343 (408)
T KOG0140|consen 264 FDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASI 343 (408)
T ss_pred ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCC
Q 041985 356 AKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFA 402 (415)
Q Consensus 356 ~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~ 402 (415)
+|.++++.+..++..++|++||.||..++|+++ |+|.+|+|.++...
T Consensus 344 AK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~ 406 (408)
T KOG0140|consen 344 AKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKF 406 (408)
T ss_pred HHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 89999999988654
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=5.2e-73 Score=503.76 Aligned_cols=354 Identities=29% Similarity=0.437 Sum_probs=343.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCC--CHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCC
Q 041985 46 LLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEF--PFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDV 122 (415)
Q Consensus 46 ~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~--~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~ 122 (415)
.+++||..+++.+++|+++++.|.+.++|+.++| .++.|+++.++||++++. ++|||.|.+....+.+.||+++.+.
T Consensus 40 g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g 119 (421)
T KOG0141|consen 40 GLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASG 119 (421)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcC
Confidence 3899999999999999999999999999999999 588999999999999977 9999999999999999999999999
Q ss_pred chhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCC
Q 041985 123 SCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNST 202 (415)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~ 202 (415)
+++..+..|+.++..-|.+.|+++||++|||++++|+-+++++||||+.|||+.++.+.|++++++|+|||+|.||||++
T Consensus 120 ~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~ 199 (421)
T KOG0141|consen 120 GVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGP 199 (421)
T ss_pred CcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC-----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHH
Q 041985 203 FADLLVILARNTTT-----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTL 276 (415)
Q Consensus 203 ~ad~~lv~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~ 276 (415)
.||.++|.|+|+.. .++++|+|..+.||++..+..+++|||+++|+++.|+|++||.++++|.+ +|+-.++.-+
T Consensus 200 ~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgL 279 (421)
T KOG0141|consen 200 DADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGL 279 (421)
T ss_pred CCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCC
Confidence 99999999999643 78999999999999999999999999999999999999999999999997 7887888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHH
Q 041985 277 SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLA 356 (415)
Q Consensus 277 ~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~ 356 (415)
+..|+.+++..+|+++.++|.+..|+++|++||++|++||.+|.++|+|.+.+.++|+++|..++..|.+..+...++++
T Consensus 280 d~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~ 359 (421)
T KOG0141|consen 280 DLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGV 359 (421)
T ss_pred ChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHh
Q 041985 357 KGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREIT 399 (415)
Q Consensus 357 K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~ 399 (415)
++|++|.+..|+-.|+|++||.||++++|..| |+|.+|+|++.
T Consensus 360 il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~ 418 (421)
T KOG0141|consen 360 ILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELN 418 (421)
T ss_pred hhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999 99999999874
No 4
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=5.2e-66 Score=512.07 Aligned_cols=389 Identities=79% Similarity=1.252 Sum_probs=363.0
Q ss_pred CCCCCCCCCcCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcccc
Q 041985 20 LAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKG 99 (415)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~ 99 (415)
-.+|+.+|+ +-|||+.++++ .|+..++++++.+++.+++|+.+++.|...++++..++|.+.|++|.+.||+++.+++
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~ 81 (412)
T PLN02526 4 VAFPQATPA-SIFPPSVSDYY-QFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKG 81 (412)
T ss_pred cccccCCCC-CCCChhhcccc-ccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcccc
Confidence 468888887 88999999998 8999999999999999999999999998878777788999999999999999987799
Q ss_pred cCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCc
Q 041985 100 YGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALR 179 (415)
Q Consensus 100 ~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~ 179 (415)
|||.|+++.+++.++|++++.|++++..+.+|+.++...+..+|+++||++|++++++|+.++++++|||+.|+|...+.
T Consensus 82 ~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~ 161 (412)
T PLN02526 82 YGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLN 161 (412)
T ss_pred cCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCe
Confidence 99999999999999999999998887766677666666789999999999999999999999999999999999999999
Q ss_pred eEEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCC
Q 041985 180 TTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPD 259 (415)
Q Consensus 180 t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~ 259 (415)
|++++++|||+|||+|.||||+..||+++|++++++++++++|+||++.|||++.+.|+++|+|++++++|+|+||+||+
T Consensus 162 t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~ 241 (412)
T PLN02526 162 TTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPD 241 (412)
T ss_pred eEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECH
Confidence 99999999999999999999999999999999986556788999999999999999999999999999999999999999
Q ss_pred CCCcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 260 EDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRV 339 (415)
Q Consensus 260 ~~vlg~~~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~a 339 (415)
+++|+..+++......+..+|+.+++.++|+++++++.+++|+++|++||++|+++|.+|+++++|.++++++|++++++
T Consensus 242 ~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~a 321 (412)
T PLN02526 242 EDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRL 321 (412)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997766777777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCC
Q 041985 340 CNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFAS 403 (415)
Q Consensus 340 a~~~~~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~ 403 (415)
++.+|.+......++++|.++++.+.++++.++|+|||.||++++|++| +++++|+|.++|+++
T Consensus 322 a~~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~~~ 401 (412)
T PLN02526 322 CKLYESGKMTPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGIAS 401 (412)
T ss_pred HHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcCcc
Confidence 9999887655667899999999999999999999999999999999999 889999999999999
Q ss_pred CCccccc
Q 041985 404 FKPAVLT 410 (415)
Q Consensus 404 ~~~~~~~ 410 (415)
++|..-+
T Consensus 402 ~~~~~~~ 408 (412)
T PLN02526 402 FKPAAST 408 (412)
T ss_pred cCccccc
Confidence 9987644
No 5
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-67 Score=465.37 Aligned_cols=397 Identities=40% Similarity=0.587 Sum_probs=380.5
Q ss_pred hccCCCCCCCccCCCCCCCCCcCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHH
Q 041985 8 SSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKL 87 (415)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l 87 (415)
+.++..+.+++.-++|.+.++ ++.|+-..|++ .++..|++|+..+++.+|+++++++.|...++.+.+.|+++++.++
T Consensus 18 s~~s~l~p~e~g~r~~s~~~~-s~~P~f~qD~~-~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pem 95 (432)
T KOG0138|consen 18 SWVSSLAPTERGGRTQSQLSK-SSRPEFWQDPL-VLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEM 95 (432)
T ss_pred ehhhcCchhhhcccccccccc-ccCCccccchh-hhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhh
Confidence 345677777777788888887 88999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCcccccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEec
Q 041985 88 GALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALT 167 (415)
Q Consensus 88 ~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~t 167 (415)
.+.|+++-.++.||..|+|...+..+.+|+.+.|.+......+|+.++..+|..||+++||++|||.+++|++++||++|
T Consensus 96 GsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLT 175 (432)
T KOG0138|consen 96 GSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLT 175 (432)
T ss_pred hccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEecc
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCCceEEEEeCCE--EEEeeeeeeccCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCccccccc
Q 041985 168 EPDYGSDASALRTTATKVEGG--WILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIV 245 (415)
Q Consensus 168 E~~~gsd~~~~~t~a~~~~~g--~~lnG~K~~vs~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~ 245 (415)
||++|||+.+++|+|+.+..+ |.|||+|.||+|+++||+++|+||...++.+.-|+|+++.+|++...+..++++|.+
T Consensus 176 EPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas 255 (432)
T KOG0138|consen 176 EPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRAS 255 (432)
T ss_pred CCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeec
Confidence 999999999999999999988 999999999999999999999999986788999999999999999999999999999
Q ss_pred CcccEEecceeeCCCCCcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHH
Q 041985 246 QNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQM 325 (415)
Q Consensus 246 ~~~~v~f~~v~Vp~~~vlg~~~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~ 325 (415)
.++.|.+|||+||++++|....++......++..|..+++..+|++..|++.+.+|...|+|||+|++.+|.+|.+|++|
T Consensus 256 ~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladm 335 (432)
T KOG0138|consen 256 ATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADM 335 (432)
T ss_pred ccCceeecCCcCChhhcCCCccccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 99999999999999999987777777788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------H
Q 041985 326 LGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------I 389 (415)
Q Consensus 326 ~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~ 389 (415)
..++..+-.++++..++.|+++.....+++.|.+.+..++++++.+.+++||.|...++.+.| |
T Consensus 336 ltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDi 415 (432)
T KOG0138|consen 336 LTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDI 415 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhCCCCCCc
Q 041985 390 NSLLTGREITGFASFKP 406 (415)
Q Consensus 390 ~~~~i~~~~~g~~~~~~ 406 (415)
+..+.+|+++|+.+|+|
T Consensus 416 haLilGRaiTGia~F~~ 432 (432)
T KOG0138|consen 416 HALILGRAITGIAAFKP 432 (432)
T ss_pred HHHhhhhhhhhhhhcCC
Confidence 99999999999999986
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=4.4e-64 Score=495.26 Aligned_cols=360 Identities=43% Similarity=0.710 Sum_probs=338.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
|++.++++++++++.+++|+++++.|...+.++.+.+|++.|++|.+.||+++ + ++|||.|+++.++..++|++++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~ 87 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVD 87 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhC
Confidence 56779999999999999999999999988888888999999999999999999 8 999999999999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCC
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNS 201 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~ 201 (415)
+++++.+.+|..++...+..+|+++||++|++++.+|++++++++|||++|+|+..+.|+|++++|||+|||+|.|||++
T Consensus 88 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~ 167 (386)
T cd01151 88 SGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNS 167 (386)
T ss_pred hhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCC
Confidence 98887777776566667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCCCChHHHHHHHHHHHH
Q 041985 202 TFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRL 281 (415)
Q Consensus 202 ~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~~~~~~~~~~~~~r~ 281 (415)
..||+++|+|++++++++++|+||++.|||++.+.|+++|++++++++++|+||+||.+++++..+++......+...|+
T Consensus 168 ~~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~ 247 (386)
T cd01151 168 PIADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARY 247 (386)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHH
Confidence 99999999999876567889999999999999999999999999999999999999999999877788777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 041985 282 MVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWIT 361 (415)
Q Consensus 282 ~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~ 361 (415)
.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+.++++|++++++++.+|.+.......+++|.+++
T Consensus 248 ~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~ 327 (386)
T cd01151 248 GIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNC 327 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987666677899999999
Q ss_pred HHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCC
Q 041985 362 SRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFAS 403 (415)
Q Consensus 362 ~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~ 403 (415)
+.+.++++.++|++||.||++++|++| +++..|++.++|+.+
T Consensus 328 ~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~~~ 385 (386)
T cd01151 328 GKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGIQA 385 (386)
T ss_pred HHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999 888889999988743
No 7
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=3.8e-61 Score=473.47 Aligned_cols=354 Identities=29% Similarity=0.443 Sum_probs=326.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchh
Q 041985 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCS 125 (415)
Q Consensus 47 l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~ 125 (415)
+|++++.+++.+++|+++.+.|...++|+.+.+|++.|+.|++.||+++.+ ++|||.|++..+++.++|++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 478999999999999999999998889888899999999999999999977 9999999999999999999999998877
Q ss_pred hHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCC
Q 041985 126 SFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFAD 205 (415)
Q Consensus 126 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad 205 (415)
+.+..+. ++..++..+|+++||++||+++.+|+.++++++|||..|+|...+.|++++++|||+|||+|.|+|++..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 81 TAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 6654443 455567778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC------CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHH
Q 041985 206 LLVILARNTTT------KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSI 278 (415)
Q Consensus 206 ~~lv~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~ 278 (415)
+++|+++++++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++.. .++......+..
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 239 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK 239 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence 99999998532 35789999999999999999999999999999999999999999999875 678777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 041985 279 SRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKG 358 (415)
Q Consensus 279 ~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~ 358 (415)
.|+.+++.++|+++++++.+.+|+++|.+||++|+++|.+|++|++|.++++++|++++++++.+|.+.......+++|.
T Consensus 240 ~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~ 319 (378)
T cd01157 240 TRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKA 319 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877555556789999
Q ss_pred HHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCC
Q 041985 359 WITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGF 401 (415)
Q Consensus 359 ~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~ 401 (415)
++++.+.++++.+++++||.||+++++++| +++++|+|.++|+
T Consensus 320 ~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 320 FAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 7788888887764
No 8
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=6.9e-61 Score=474.70 Aligned_cols=357 Identities=28% Similarity=0.473 Sum_probs=330.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHH--HHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 44 DGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQ--VIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 44 ~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~--~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
++.+++++.++++.+++|+++++.|...++|+++.+|.+ +|+.|++.||+++.+ ++|||.|+++.+.+.++|++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 344899999999999999999999998889888888876 699999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccC
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGN 200 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 200 (415)
|+++++.+.+|..++...+..+|+++||++|+|.+.+|+.++|+++|||++|+|...+.|++++++|||+|||+|.|+|+
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 99999888778766666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHH
Q 041985 201 STFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTL 276 (415)
Q Consensus 201 ~~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~ 276 (415)
+..+|+++|+|+++++ .++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++++.. +++......+
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~ 262 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGL 262 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHH
Confidence 9999999999998642 45889999999999999999999999999999999999999999999875 6777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHH
Q 041985 277 SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLA 356 (415)
Q Consensus 277 ~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~ 356 (415)
+..|+.+++.++|+++++++.+++|+++|.+||+|++++|.+|++|++|.+++++++++++++++.++.+.....+.+.+
T Consensus 263 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~a 342 (404)
T PLN02519 263 DLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGV 342 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876556678889
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 357 KGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 357 K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
|+++++.+.++++.+++++||.||+++++++| +++++|++.+++
T Consensus 343 k~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~ 402 (404)
T PLN02519 343 ILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFK 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999 666777776643
No 9
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.9e-61 Score=471.69 Aligned_cols=354 Identities=25% Similarity=0.359 Sum_probs=323.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcc-ccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELA-PIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~-p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
|++.++++++.+++.+++|+.+.+. +...++|+.+.+|++.|++|++.||+++.+ ++|||.|.++.+.+.++|++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 5677999999999999999999886 466778888899999999999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHH-hcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeecc
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSM-AQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVG 199 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l-~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs 199 (415)
|.+ ++. .++.++...+..+|+++||++|++++ .+|+.++++++|||+.|||...+.++|++++|||+|||+|+|||
T Consensus 81 ~~~-~~~--~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is 157 (381)
T PRK12341 81 GAP-AFL--ITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT 157 (381)
T ss_pred Chh-HHH--HhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence 987 332 23334556688899999999999999 59998899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHH
Q 041985 200 NSTFADLLVILARNTTT----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTIT 274 (415)
Q Consensus 200 ~~~~ad~~lv~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~ 274 (415)
|+..||+++|+|+++++ .++++|+||++.|||++. .|+++|+++++++.|.|+||+||.+++||.. +++.....
T Consensus 158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 236 (381)
T PRK12341 158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY 236 (381)
T ss_pred CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence 99999999999998632 357899999999999994 6899999999999999999999999999885 67777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 041985 275 TLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHAS 354 (415)
Q Consensus 275 ~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~ 354 (415)
.++..|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++++++..+.+.+....++
T Consensus 237 ~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~ 316 (381)
T PRK12341 237 NFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAA 316 (381)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999988776666789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 355 LAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 355 ~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
++|.++++.+.++++.+++++||.||.+++|++| +++++|++.+++
T Consensus 317 ~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~ 378 (381)
T PRK12341 317 LAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILK 378 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 777778887764
No 10
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=4.2e-61 Score=471.50 Aligned_cols=344 Identities=21% Similarity=0.229 Sum_probs=307.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHH--HHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 45 GLLTSEEQAIRKKVRECAEKELAPIVAE--YWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 45 ~~l~~~~~~l~~~~~~~~~~~l~p~~~~--~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
+.++++|+++++.+++|+++++.|...+ +++.+.||+++|++|.+.||+++.+ ++|||.|++..+.+.++|++++.+
T Consensus 2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 4589999999999999999988876543 4566789999999999999999977 999999999999999999999976
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCC
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNS 201 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~ 201 (415)
..... ..+..++..++..+|+++||++|||++++|+.++++++|||+.|||...+.|++++++|+|+|||+|.||+++
T Consensus 82 ~~~~~--~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEPY--LATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 54332 2222244557889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC----CCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHH
Q 041985 202 TFADLLVILARNTT----TKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTL 276 (415)
Q Consensus 202 ~~ad~~lv~a~~~~----~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~ 276 (415)
..||+++|+|++++ .+++++|+||++.|||++.+.+++.|+ .+++|.||||+||.+++||.. +++......+
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l 236 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVV 236 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHH
Confidence 99999999999853 257899999999999999877766665 468999999999999999875 7788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCchhHHH
Q 041985 277 SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG--KMTAGHAS 354 (415)
Q Consensus 277 ~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~--~~~~~~~~ 354 (415)
+..|+.+++.++|+++++++.+++|+++|++||+||++||.||++|++|.++++++|++++++++..+.+ .+....++
T Consensus 237 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a 316 (378)
T TIGR03203 237 DDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIA 316 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887753 23456789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985 355 LAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLL 393 (415)
Q Consensus 355 ~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~ 393 (415)
++|+++++.+.++++.++|+|||+||+.++|++|..|+.
T Consensus 317 ~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a 355 (378)
T TIGR03203 317 AAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRL 355 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHH
Confidence 999999999999999999999999999999999944444
No 11
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.3e-61 Score=471.19 Aligned_cols=354 Identities=25% Similarity=0.361 Sum_probs=321.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKEL-APIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l-~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
|++.+|++|+++++.+++|+++++ .+...++++.+.||.+.|++|++.||+++.+ ++|||.|+++.+++.+++++++.
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 466799999999999999999876 5666778888899999999999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccC
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGN 200 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 200 (415)
|+++++.+.++. ....+..+++++||++||+++.+|+.+.++++|||+.|||...+.|++++++|||+|||+|.|||+
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~ 158 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS 158 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence 988776554442 345688899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHH
Q 041985 201 STFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTL 276 (415)
Q Consensus 201 ~~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~ 276 (415)
+..|||++|+|+++++ .++++|+||++.|||++. .|+++|+|+++++++.||||+||+++++|.+ +++......+
T Consensus 159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~ 237 (380)
T PRK03354 159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF 237 (380)
T ss_pred CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence 9999999999997422 356889999999999986 6899999999999999999999999999875 5676666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHH
Q 041985 277 SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLA 356 (415)
Q Consensus 277 ~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~ 356 (415)
+.+|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++++++..+.+.......+++
T Consensus 238 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~a 317 (380)
T PRK03354 238 DHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMC 317 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998876556678999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHh
Q 041985 357 KGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREIT 399 (415)
Q Consensus 357 K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~ 399 (415)
|.++++.+.++++.+++++||.||++++|++| +++++|+|.++
T Consensus 318 K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~ 376 (380)
T PRK03354 318 KYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVL 376 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 66666666654
No 12
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=1.1e-60 Score=469.57 Aligned_cols=353 Identities=32% Similarity=0.504 Sum_probs=327.4
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchh
Q 041985 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCS 125 (415)
Q Consensus 47 l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~ 125 (415)
++++++++++.+++|+++++.|...++|..+.+|++.|+.|++.||+++.+ ++|||.|.+..+.+.+++++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 478999999999999999999998888988999999999999999999977 9999999999999999999999999988
Q ss_pred hHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCC
Q 041985 126 SFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFAD 205 (415)
Q Consensus 126 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad 205 (415)
+.+.+|. ++...+..+|+++|+++|++++.+|+.++++++|||.+|+|...+.++++++++||+|||+|+|||++..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 7777775 456678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC--CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHH
Q 041985 206 LLVILARNTTT--KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLM 282 (415)
Q Consensus 206 ~~lv~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~ 282 (415)
+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++++.||||+||.+++|+.. .++......+..+|+.
T Consensus 160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~ 239 (375)
T cd01162 160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLN 239 (375)
T ss_pred EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 99999997543 46889999999999999999999999999999999999999999999875 5777777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-chhHHHHHHHHHH
Q 041985 283 VAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKM-TAGHASLAKGWIT 361 (415)
Q Consensus 283 ~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~-~~~~~~~~K~~~~ 361 (415)
.++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++.+++.++.+.+ ....++++|++++
T Consensus 240 ~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~ 319 (375)
T cd01162 240 IASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFAT 319 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988743 3456789999999
Q ss_pred HHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 362 SRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 362 ~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
+.+.++++.++++|||.||+.+++++| +++++|++.++|
T Consensus 320 ~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 320 DECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred HHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 666777776654
No 13
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=2.6e-60 Score=467.23 Aligned_cols=347 Identities=31% Similarity=0.472 Sum_probs=323.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchh
Q 041985 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCS 125 (415)
Q Consensus 47 l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~ 125 (415)
++++++.+++.+++|+++++.|.+.+.|+.+.+|++.|+.|++.||+++.+ ++|||.|+++.+.+.+++++++.|++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 588999999999999999999998888888899999999999999999977 9999999999999999999999999998
Q ss_pred hHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCC
Q 041985 126 SFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFAD 205 (415)
Q Consensus 126 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad 205 (415)
+.+..|..++...|..+|+++|+++|++++++|++++++++|||..|+|...+.+++++++|||+|||+|.|+|++..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 87777765566678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHH
Q 041985 206 LLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRL 281 (415)
Q Consensus 206 ~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~ 281 (415)
+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++|+.. +++......+...|+
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 241 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL 241 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence 99999997643 46789999999999999999999999999999999999999999999875 677777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 041985 282 MVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWIT 361 (415)
Q Consensus 282 ~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~ 361 (415)
.+++.++|+++++++.+++|+++|++||+|++++|.+|++|++|.++++++|++++++++.+|.+.......+++|.+++
T Consensus 242 ~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~ 321 (376)
T cd01156 242 VLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAA 321 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987655566788999999
Q ss_pred HHHHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985 362 SRARETVALGRELLGGNGISTDFHVAKINSLL 393 (415)
Q Consensus 362 ~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~ 393 (415)
+.+.++++.+++++||.||+.+++++|+.|+.
T Consensus 322 ~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda 353 (376)
T cd01156 322 EKATQVALDAIQILGGNGYINDYPTGRLLRDA 353 (376)
T ss_pred HHHHHHHHHHHHHhcCcccccCCHHHHHHHHh
Confidence 99999999999999999999999999944443
No 14
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.5e-60 Score=466.38 Aligned_cols=344 Identities=25% Similarity=0.349 Sum_probs=316.4
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchh
Q 041985 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCS 125 (415)
Q Consensus 47 l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~ 125 (415)
++++++.+++.+++|+++++.|...+.|+.+.+|++.|+.|.+.||+++.+ ++|||.|+++.+.+.++|++++.|++++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 478999999999999999999999888888899999999999999999977 9999999999999999999999999988
Q ss_pred hHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCC
Q 041985 126 SFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFAD 205 (415)
Q Consensus 126 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad 205 (415)
+....+ .++...+..+|+++||++||+++.+|+.++++++|||+.|||...+.|++++++|||+|||+|.|||++..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 654333 3455668889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHH
Q 041985 206 LLVILARNTTT----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISR 280 (415)
Q Consensus 206 ~~lv~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r 280 (415)
+++|+++++++ .++++|+||++.|||++. .|+++|++++++++|.|+||+||.+++++.. .++......++..|
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 238 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR 238 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence 99999998532 457899999999999975 6899999999999999999999999999875 67777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 041985 281 LMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWI 360 (415)
Q Consensus 281 ~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~ 360 (415)
+.+++.++|+++++++.+.+|+++|++||+||.++|.+|++|++|.+.++++|++++++++.++.+.+....++++|.++
T Consensus 239 ~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~ 318 (372)
T TIGR03207 239 ALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWA 318 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988765556789999999
Q ss_pred HHHHHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985 361 TSRARETVALGRELLGGNGISTDFHVAKINSLL 393 (415)
Q Consensus 361 ~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~ 393 (415)
++.+.++++.++|+|||.||+.+ |++|..|+.
T Consensus 319 ~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~ 350 (372)
T TIGR03207 319 PKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDV 350 (372)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHh
Confidence 99999999999999999999999 999944433
No 15
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-60 Score=469.61 Aligned_cols=354 Identities=24% Similarity=0.357 Sum_probs=327.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCc
Q 041985 45 GLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVS 123 (415)
Q Consensus 45 ~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~ 123 (415)
+.++++++++++.+++|+.+++.|...+.|+.+.+|++.|+.|++.||+++.+ ++|||.|+++.+.+.+.|++++.|++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 46899999999999999999999999888888899999999999999999976 99999999999999999999999988
Q ss_pred hhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCC-EEEEeeeeeeccCCC
Q 041985 124 CSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEG-GWILEGQKRWVGNST 202 (415)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~-g~~lnG~K~~vs~~~ 202 (415)
+++.+..|..+....+..+|+++||++|++.+.+|++++++++|||.+|+|...+.|+++++++ ||+|||+|.||||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 8776666765556678889999999999999999999999999999999999999999999764 799999999999999
Q ss_pred CCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHH
Q 041985 203 FADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRL 281 (415)
Q Consensus 203 ~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~ 281 (415)
.||+++|.|+++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+.+ +++......+...|+
T Consensus 195 ~Ad~~lv~a~~~--~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~ 272 (410)
T PTZ00461 195 VADVFLIYAKVD--GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERV 272 (410)
T ss_pred cCCEEEEEEEeC--CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHH
Confidence 999999999975 46889999999999999999999999999999999999999999999875 677777777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 041985 282 MVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWIT 361 (415)
Q Consensus 282 ~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~ 361 (415)
..++.++|+++++++.+++|+++|.+||+||+++|.+|++|++|.+.++++|++++.+++.++.+......++++|.+++
T Consensus 273 ~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~ 352 (410)
T PTZ00461 273 TLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFAT 352 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876555566789999999
Q ss_pred HHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 362 SRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 362 ~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
+.+.++++.++|++||.||+.++|++| +++..|++.+++
T Consensus 353 ~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~ 407 (410)
T PTZ00461 353 PIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLK 407 (410)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 666677776643
No 16
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=5.2e-60 Score=464.46 Aligned_cols=344 Identities=28% Similarity=0.399 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhH
Q 041985 49 SEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSF 127 (415)
Q Consensus 49 ~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~ 127 (415)
++|+++++.+++|+.+++.|...++|+++.+|++.|++|++.||+++.+ ++|||.|+++.+++.++|++++.+.+ ++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~ 79 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPG 79 (372)
T ss_pred ChHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHH
Confidence 4688999999999999999998888888899999999999999999977 99999999999999999999996543 656
Q ss_pred HHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEE
Q 041985 128 ILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLL 207 (415)
Q Consensus 128 ~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~ 207 (415)
+.+|..++...+..+|+++||++|++++.+|+.++|+++|||.+|||...+.|+++++++||+|||+|.||||+..||++
T Consensus 80 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~ 159 (372)
T cd01160 80 LSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVV 159 (372)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEE
Confidence 66676556667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCC----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHH
Q 041985 208 VILARNTTT----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLM 282 (415)
Q Consensus 208 lv~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~ 282 (415)
+|.++++++ +++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.+ +++......+...|+.
T Consensus 160 ~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~ 239 (372)
T cd01160 160 IVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLL 239 (372)
T ss_pred EEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 999998643 46889999999999999999999999999999999999999999999886 6777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 041985 283 VAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITS 362 (415)
Q Consensus 283 ~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~ 362 (415)
.++.++|+++++++.+++|+++|++||++++++|.+|++|++|.+++++++++++.+++.++.+......++++|.++++
T Consensus 240 ~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~ 319 (372)
T cd01160 240 IAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATE 319 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998876566678999999999
Q ss_pred HHHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985 363 RARETVALGRELLGGNGISTDFHVAKINSLL 393 (415)
Q Consensus 363 ~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~ 393 (415)
.+.++++.+++++||.||++++|++|..|+.
T Consensus 320 ~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~ 350 (372)
T cd01160 320 LQNRVAYECVQLHGGWGYMREYPIARAYRDA 350 (372)
T ss_pred HHHHHHHHHHHHhcCceecCCCHHHHHHHHh
Confidence 9999999999999999999999999955554
No 17
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=8.6e-60 Score=467.82 Aligned_cols=356 Identities=26% Similarity=0.350 Sum_probs=324.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
.|++.++++++++++.+++|+++++.|. ++++.+.+|++.|+.|++.||+++.+ ++|||.|+++.+.+.++|++++
T Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~- 98 (409)
T cd01161 22 VLTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM- 98 (409)
T ss_pred ccCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-
Confidence 4555689999999999999999999886 45677889999999999999999977 9999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEeeeeeec
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILEGQKRWV 198 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~lnG~K~~v 198 (415)
|+++++.+.+|..++...+..+|+++|+++|++++++|+.++++++|||+.|+|...+.++++++ ++||+|||+|.|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~v 178 (409)
T cd01161 99 DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWI 178 (409)
T ss_pred ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEee
Confidence 99888877777655555678899999999999999999999999999999999999999999984 4579999999999
Q ss_pred cCCCCCCEEEEEEEeCC-------CCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChH
Q 041985 199 GNSTFADLLVILARNTT-------TKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQ 270 (415)
Q Consensus 199 s~~~~ad~~lv~a~~~~-------~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~ 270 (415)
||+..||+++|.|++++ .+++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.. +++.
T Consensus 179 s~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~ 258 (409)
T cd01161 179 TNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFK 258 (409)
T ss_pred cCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHH
Confidence 99999999999999751 145789999999999999999999999999999999999999999999875 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--C
Q 041985 271 DTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK--M 348 (415)
Q Consensus 271 ~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~--~ 348 (415)
.....++.+|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.++++++|++++++++.++.+. +
T Consensus 259 ~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~ 338 (409)
T cd01161 259 VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAE 338 (409)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999998875 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 349 TAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 349 ~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
....++++|.++++.+.++++.++|++||.||++++|++| +++++|++..++
T Consensus 339 ~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~ 406 (409)
T cd01161 339 YQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQ 406 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999999999 667777776654
No 18
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4e-59 Score=482.53 Aligned_cols=353 Identities=25% Similarity=0.334 Sum_probs=313.5
Q ss_pred cCCCCCCCccCCCCCCCCCcCCCCCCcccccccCCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHH---hCCCCHHHHH
Q 041985 10 YSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKK-VRECAEKELAPIVAEYWE---KAEFPFQVIP 85 (415)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~l~p~~~~~~~---~~~~~~~~~~ 85 (415)
+++.|.|+++.++|.+ .+|+|++++++. +++|++. ..+++. .+.+|+++|+
T Consensus 62 F~G~~~~~~l~~~p~~--------------------~Ls~ee~~~~d~~v~~l~~~-----~~~~~~~~~~~~~P~e~w~ 116 (777)
T PRK09463 62 FSGKPDWKKLLNYPKP--------------------TLTAEEQAFLDGPVEELCRM-----VNDWQITHELADLPPEVWQ 116 (777)
T ss_pred cCCCCChHHhcCCCCC--------------------CCCHHHHHHHHHHHHHHHHH-----HHHHHHhccccCCCHHHHH
Confidence 4677777766666542 158889999886 8887764 334443 3689999999
Q ss_pred HHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHH-HHHHccCCHHHHHhHhHHHhcccceeE
Q 041985 86 KLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAM-LTIAQYGSEEQKQKYLPSMAQLKTIAS 163 (415)
Q Consensus 86 ~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~-~~l~~~g~~~qk~~~l~~l~~g~~~~~ 163 (415)
.|++.||+++.+ ++|||.|++..+.+.++|++++.|++++..+.+|+.++. .+|..||+++||++|||++++|+.++|
T Consensus 117 ~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~a 196 (777)
T PRK09463 117 FIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPC 196 (777)
T ss_pred HHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeE
Confidence 999999999977 999999999999999999999999888776677776653 478899999999999999999999999
Q ss_pred EEecCCCCCCCcCCCceEE-----EEeCC---EEEEeeeeeeccCCCCCCEEEEEEEe-CC--------CCCeeEEEEeC
Q 041985 164 WALTEPDYGSDASALRTTA-----TKVEG---GWILEGQKRWVGNSTFADLLVILARN-TT--------TKQINAFIVKK 226 (415)
Q Consensus 164 ~a~tE~~~gsd~~~~~t~a-----~~~~~---g~~lnG~K~~vs~~~~ad~~lv~a~~-~~--------~~~~~~flV~~ 226 (415)
+++|||+.|||+.++.|++ +.+++ ||+|||+|.||||++.||+++|++++ ++ +.++++|+||+
T Consensus 197 fAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~ 276 (777)
T PRK09463 197 FALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPT 276 (777)
T ss_pred EEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEEC
Confidence 9999999999999888654 34555 69999999999999999999999986 21 25689999999
Q ss_pred CCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCC----CCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 041985 227 HAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPG----FKSFQDTITTLSISR-LMVAWQSIGIAMGVYDMCHRY 301 (415)
Q Consensus 227 ~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~----~~~~~~~~~~~~~~r-~~~~a~~~G~a~~al~~a~~~ 301 (415)
+.|||++.+.+.++|++ ..+++++|+||+||.+++||. +.|+.+.+..++.+| +.+++.++|+++++++.+.+|
T Consensus 277 d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~Y 355 (777)
T PRK09463 277 DTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAY 355 (777)
T ss_pred CCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 678999999999999999986 468889999999999 899999999999999999999
Q ss_pred hhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccC
Q 041985 302 LMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGIS 381 (415)
Q Consensus 302 a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~ 381 (415)
+++|++||+||++||.||++||+|.+++++++++.+.+++.+|.+......++++|+++++.+.++++.++|+|||.||+
T Consensus 356 A~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~ 435 (777)
T PRK09463 356 ARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGIC 435 (777)
T ss_pred HHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhhee
Confidence 99999999999999999999999999999999999999998998876667789999999999999999999999999999
Q ss_pred Cc--chHHH
Q 041985 382 TD--FHVAK 388 (415)
Q Consensus 382 ~~--~~~~r 388 (415)
.+ ++++|
T Consensus 436 ~~~~~~leR 444 (777)
T PRK09463 436 LGPNNFLAR 444 (777)
T ss_pred CCCCChHHH
Confidence 87 99999
No 19
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=1.2e-57 Score=448.05 Aligned_cols=345 Identities=38% Similarity=0.571 Sum_probs=321.2
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhH
Q 041985 49 SEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSF 127 (415)
Q Consensus 49 ~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~ 127 (415)
+++.++++.+++|+.+++.+.+.+.|+.+.+|++.|+.|++.||+++.+ ++|||.|.++.+.+.+++++++.|+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~ 80 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVI 80 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHH
Confidence 3678999999999999999988888888889999999999999999977 999999999999999999999999999988
Q ss_pred HHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEE
Q 041985 128 ILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLL 207 (415)
Q Consensus 128 ~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~ 207 (415)
+.+|..++...+..+++++|+++|++++.+|+.++++++|||.+|+|...+.++++++++||+|||+|.|+|++..||++
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~ 160 (373)
T cd01158 81 VSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFY 160 (373)
T ss_pred HHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEE
Confidence 88887566677889999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHH
Q 041985 208 VILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMV 283 (415)
Q Consensus 208 lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~ 283 (415)
+|.++++++ .++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++|+.. .++......+..+|+.+
T Consensus 161 lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~ 240 (373)
T cd01158 161 IVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGI 240 (373)
T ss_pred EEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 999997533 45789999999999999999999999999999999999999999999876 56777777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q 041985 284 AWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSR 363 (415)
Q Consensus 284 ~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~~ 363 (415)
++.++|+++++++.+++|+++|.+||+++.++|.+|++++++.+.++++++++++++..++.+.+....++++|.++++.
T Consensus 241 ~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~ 320 (373)
T cd01158 241 AAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEV 320 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988766566789999999999
Q ss_pred HHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985 364 ARETVALGRELLGGNGISTDFHVAKINSLL 393 (415)
Q Consensus 364 a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~ 393 (415)
+.++++.+++++||.||++++|++|..|+.
T Consensus 321 a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~ 350 (373)
T cd01158 321 AMRVTTDAVQIFGGYGYTKDYPVERYYRDA 350 (373)
T ss_pred HHHHHHHHHHhhcCccCCCCChHHHHHHHh
Confidence 999999999999999999999999944443
No 20
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-57 Score=470.09 Aligned_cols=336 Identities=26% Similarity=0.315 Sum_probs=294.3
Q ss_pred CCHHHHHHHH-HHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCch
Q 041985 47 LTSEEQAIRK-KVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSC 124 (415)
Q Consensus 47 l~~~~~~l~~-~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~ 124 (415)
|++|++++.+ .++++++. + +.....++.+.+|+++|+.|++.||+++.+ ++|||.|++..+.+.++|++++.+.++
T Consensus 78 l~~eeq~fl~~~v~~l~~~-~-~e~~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~ 155 (774)
T PRK13026 78 LTAEEQAFIDNEVETLLTM-L-DDWDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSA 155 (774)
T ss_pred cCHHHHHHHHHHHHHHHhh-h-hhhhhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccch
Confidence 5666666655 57777663 2 222233457899999999999999999977 999999999999999999999988887
Q ss_pred hhHHHHhhhhH-HHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEE-----EeCC---EEEEeeee
Q 041985 125 SSFILVHSSLA-MLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTAT-----KVEG---GWILEGQK 195 (415)
Q Consensus 125 ~~~~~~~~~~~-~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~-----~~~~---g~~lnG~K 195 (415)
+..+.+|+.++ ..+|..||+++||++|||++++|+.++|+++|||++|||+.++.|+++ .+++ ||+|||+|
T Consensus 156 a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K 235 (774)
T PRK13026 156 AVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDK 235 (774)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEE
Confidence 77666776555 457889999999999999999999999999999999999999887664 4565 69999999
Q ss_pred eeccCCCCCCEEEEEEEe-CC--------CCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCC-
Q 041985 196 RWVGNSTFADLLVILARN-TT--------TKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPG- 265 (415)
Q Consensus 196 ~~vs~~~~ad~~lv~a~~-~~--------~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~- 265 (415)
.|||+++.||+++|.+++ ++ ..++++|+||++.|||++.+.++++|++.. +++++||||+||.+++||.
T Consensus 236 ~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~ 314 (774)
T PRK13026 236 RYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGP 314 (774)
T ss_pred EeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCc
Confidence 999999999999888764 21 147899999999999999999999999864 6899999999999999986
Q ss_pred ---CCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHH---HHHHHHHHHHH
Q 041985 266 ---FKSFQDTITTLSISR-LMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLG---NIQAMILAGWR 338 (415)
Q Consensus 266 ---~~~~~~~~~~~~~~r-~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~---~~~a~~~~~~~ 338 (415)
++|+...+..++.+| +.+++.++|+++++++.+.+|+++|++||+||++||.||++||+|.+ .++++|.+++.
T Consensus 315 ~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~ 394 (774)
T PRK13026 315 DYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTT 394 (774)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999 89999999999999999999999999999999999999999999999 78999999887
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCc--chHHH
Q 041985 339 VCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTD--FHVAK 388 (415)
Q Consensus 339 aa~~~~~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~--~~~~r 388 (415)
++ |.+......++++|+++++.+.++++.++|+|||.||+.+ ++++|
T Consensus 395 a~---D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler 443 (774)
T PRK13026 395 GL---DLGVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGH 443 (774)
T ss_pred HH---HCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHH
Confidence 64 5565556778999999999999999999999999999998 99999
No 21
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=6.7e-57 Score=445.17 Aligned_cols=338 Identities=20% Similarity=0.268 Sum_probs=299.0
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHh-----------CCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHH
Q 041985 51 EQAIRKKVRECAEKELAPIVAEYWEK-----------AEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIA 118 (415)
Q Consensus 51 ~~~l~~~~~~~~~~~l~p~~~~~~~~-----------~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 118 (415)
.+.+++.+++|+++++.|...++++. .++++++|+.+++.||+++.+ ++|||.|+++.+.+.++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 57899999999999999988777743 123358899999999999977 999999999999999999999
Q ss_pred ccCCc-hhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCC-CCCCcCCCceEEEEeCCEEEEeeeee
Q 041985 119 RVDVS-CSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPD-YGSDASALRTTATKVEGGWILEGQKR 196 (415)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~-~gsd~~~~~t~a~~~~~g~~lnG~K~ 196 (415)
+.+.. .++....+...+...+..+|+++||++|++++.+|+.++++++|||+ .|+|...+.|++++++|||+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 98632 22211122222345688999999999999999999999999999997 58999899999999999999999999
Q ss_pred eccCCCC--CCEEEEEEEeCCC-----CCeeEEEEeCCCCCeeeeecCCcccccc--cCcccEEecceeeCCCCCcCCC-
Q 041985 197 WVGNSTF--ADLLVILARNTTT-----KQINAFIVKKHAPGLTATKIENKIGLRI--VQNGDVLLKNVFVPDEDRVPGF- 266 (415)
Q Consensus 197 ~vs~~~~--ad~~lv~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~G~r~--~~~~~v~f~~v~Vp~~~vlg~~- 266 (415)
|+||+.+ +|+++|+++++++ +++++|+||++.||+++.+.|+++|+|+ +++++|.|+||+||.+++|+..
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~ 242 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG 242 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence 9999954 8899999987532 3688999999999999999999999997 5788999999999999999875
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 041985 267 KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG 346 (415)
Q Consensus 267 ~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~ 346 (415)
+++......++..|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+.++++|++++++++.++.+
T Consensus 243 ~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~ 322 (394)
T cd01155 243 RGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTV 322 (394)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67777788888999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred C--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH
Q 041985 347 K--MTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388 (415)
Q Consensus 347 ~--~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r 388 (415)
. .....++++|.++++.+.++++.+++++||.||+.+++++|
T Consensus 323 ~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r 366 (394)
T cd01155 323 GNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLAN 366 (394)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHH
Confidence 3 24567899999999999999999999999999999999999
No 22
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.8e-56 Score=441.44 Aligned_cols=352 Identities=24% Similarity=0.280 Sum_probs=306.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHH-HhCCCCH----HHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHH
Q 041985 44 DGLLTSEEQAIRKKVRECAEKELAPIVAEYW-EKAEFPF----QVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEI 117 (415)
Q Consensus 44 ~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~-~~~~~~~----~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l 117 (415)
++.++++|+++++.+++|+.+++.|...+.+ +...+|. ++|++|.+.||+++.+ ++|||.|+++.+.+.++|++
T Consensus 1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel 80 (395)
T TIGR03204 1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL 80 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999988765533 3335664 8999999999999977 99999999999999999999
Q ss_pred HccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeee
Q 041985 118 ARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRW 197 (415)
Q Consensus 118 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~ 197 (415)
++.+.+.++...++ ++...+..+|+++||++|||++.+|+.++++++|||+.|||...+.|+++++++||+|||+|.|
T Consensus 81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~ 158 (395)
T TIGR03204 81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW 158 (395)
T ss_pred HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence 99998766543322 3344678899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEEeCCC----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHH
Q 041985 198 VGNSTFADLLVILARNTTT----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDT 272 (415)
Q Consensus 198 vs~~~~ad~~lv~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~ 272 (415)
|+++..||+++|+++++++ .++++|+||.+.|||++.+.....| +.++++|.|+||+||.+++||.. .++...
T Consensus 159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 236 (395)
T TIGR03204 159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYA 236 (395)
T ss_pred ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHH
Confidence 9999999999999997532 4689999999999999977665554 66889999999999999999875 678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC-Cch
Q 041985 273 ITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE-DGK-MTA 350 (415)
Q Consensus 273 ~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~-~~~-~~~ 350 (415)
...++..|+..++ +|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|+++|+++.... .+. ...
T Consensus 237 ~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~ 314 (395)
T TIGR03204 237 KFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPN 314 (395)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 8888999988876 899999999999999999999999999999999999999999999999999985443 222 233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----------hccCccCCc----chHHH----------------HHHHHHHHHHhC
Q 041985 351 GHASLAKGWITSRARETVALGREL----------LGGNGISTD----FHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 351 ~~~~~~K~~~~~~a~~v~~~~~~i----------~Gg~g~~~~----~~~~r----------------~~~~~i~~~~~g 400 (415)
..++++|+++++.+.++++.++|+ |||.||+++ ++++| +++++|+|.++|
T Consensus 315 ~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 315 PASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 579999999999999999999985 889999966 46777 899999998876
Q ss_pred C
Q 041985 401 F 401 (415)
Q Consensus 401 ~ 401 (415)
+
T Consensus 395 ~ 395 (395)
T TIGR03204 395 L 395 (395)
T ss_pred C
Confidence 3
No 23
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=6.8e-56 Score=438.34 Aligned_cols=358 Identities=36% Similarity=0.550 Sum_probs=326.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHH---hCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 46 LLTSEEQAIRKKVRECAEKELAPIVAEYWE---KAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 46 ~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
.+++++.++++.+++|+.+.+.|...++++ ...+|++.++++++.|++++.+ ++|||.|.+..+...+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~ 83 (393)
T COG1960 4 DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARAD 83 (393)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhC
Confidence 356888999999999999999888887775 5889999999999999999977 999999999999999999999999
Q ss_pred CchhhHHHHhhhh---HHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCc-eEEEEeCCEEEEeeeeee
Q 041985 122 VSCSSFILVHSSL---AMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALR-TTATKVEGGWILEGQKRW 197 (415)
Q Consensus 122 ~~~~~~~~~~~~~---~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~-t~a~~~~~g~~lnG~K~~ 197 (415)
++.++.+..+... ....+..+|+++||++|+|++.+|++++|+++|||.+|||...+. |+++..+|+|+|||+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~ 163 (393)
T COG1960 84 AGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIW 163 (393)
T ss_pred cchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEE
Confidence 8777655554432 222567899999999999999999999999999999999999988 666676666999999999
Q ss_pred ccCCCCCCEEEEEEEeCCC----CCeeEEEEeCC-CCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHH
Q 041985 198 VGNSTFADLLVILARNTTT----KQINAFIVKKH-APGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQD 271 (415)
Q Consensus 198 vs~~~~ad~~lv~a~~~~~----~~~~~flV~~~-~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~ 271 (415)
|||++.||+++|+|+++++ +++++|+||++ .|||++.+.|++.|+|+++++++.|+||+||.+++||.. .++..
T Consensus 164 is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~ 243 (393)
T COG1960 164 ISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKI 243 (393)
T ss_pred EcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHH
Confidence 9999999999999999753 57999999999 599999999854499999999999999999999999964 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchh
Q 041985 272 TITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAG 351 (415)
Q Consensus 272 ~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~ 351 (415)
....++.+|+..++.++|+++++++.+.+|+++|++||++++++|.+|++|++|.+++++++++++++++..+.+.....
T Consensus 244 ~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~ 323 (393)
T COG1960 244 AMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGA 323 (393)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888764447
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCC
Q 041985 352 HASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFAS 403 (415)
Q Consensus 352 ~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~ 403 (415)
.++++|.++++.+.++++.++|+|||.||+.++|++| +++.++++.+++.+.
T Consensus 324 ~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~~ 391 (393)
T COG1960 324 EAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLPA 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhcc
Confidence 8999999999999999999999999999999999999 889999999998865
No 24
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=8.9e-56 Score=457.00 Aligned_cols=353 Identities=23% Similarity=0.305 Sum_probs=315.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhc---cccHHHHHHhCCCC-HHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHH
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKEL---APIVAEYWEKAEFP-FQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAE 116 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l---~p~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~ 116 (415)
.|...+++++.++++.+++|+.+.. .|....+++..+++ +++++.+++.|++++.+ ++ +..++..+.|+
T Consensus 56 ~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~ 129 (686)
T PLN02636 56 KLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEA 129 (686)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHH
Confidence 3555678888899999999998873 57677777778888 88999999999999865 43 78889999999
Q ss_pred HHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe--
Q 041985 117 IARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILE-- 192 (415)
Q Consensus 117 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~ln-- 192 (415)
+++.|++++..+.+|..++...|..+|+++||++|||++.+|++++|+|+|||++|||+.+++|+|+++ +|+|+||
T Consensus 130 l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP 209 (686)
T PLN02636 130 VGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTP 209 (686)
T ss_pred HHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCC
Confidence 999998888777888878888899999999999999999999999999999999999999999999998 6889999
Q ss_pred ---eeeeeccCCCC-CCEEEEEEEeCC---------CCCeeEEEEeCC-------CCCeeeeecCCcccccccCcccEEe
Q 041985 193 ---GQKRWVGNSTF-ADLLVILARNTT---------TKQINAFIVKKH-------APGLTATKIENKIGLRIVQNGDVLL 252 (415)
Q Consensus 193 ---G~K~~vs~~~~-ad~~lv~a~~~~---------~~~~~~flV~~~-------~pGv~v~~~~~~~G~r~~~~~~v~f 252 (415)
|+|+||+|+.. ||+++|+|++.. ..|+++|+||.+ .|||++.+..+++|+++.+++.|.|
T Consensus 210 ~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~F 289 (686)
T PLN02636 210 NDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRF 289 (686)
T ss_pred CCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEE
Confidence 99999999965 999999999851 257999999987 6999999999999999999999999
Q ss_pred cceeeCCCCCcCC-----------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC----
Q 041985 253 KNVFVPDEDRVPG-----------------FKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAP---- 311 (415)
Q Consensus 253 ~~v~Vp~~~vlg~-----------------~~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~---- 311 (415)
|||+||.+++|+. ++++......+..+|+.+++.++|+++++++++++|+++|++||+|
T Consensus 290 dnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e 369 (686)
T PLN02636 290 RSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPE 369 (686)
T ss_pred eeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCC
Confidence 9999999999953 1366778888999999999999999999999999999999999999
Q ss_pred --cchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 041985 312 --SATFQITQQKLAQMLGNIQAMI----LAGWRVCNLYEDGK-----MTAGHASLAKGWITSRARETVALGRELLGGNGI 380 (415)
Q Consensus 312 --l~~~~~iq~~la~~~~~~~a~~----~~~~~aa~~~~~~~-----~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~ 380 (415)
|++||.+|++|++|.+.+++++ .+++.+++..+.+. +....++++|.++++.+.+++++|+|+|||+||
T Consensus 370 ~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy 449 (686)
T PLN02636 370 ISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGY 449 (686)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999955 66667666665543 245678999999999999999999999999999
Q ss_pred CCcchHHH----------------HHHHHHHHHHhC
Q 041985 381 STDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 381 ~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
+.++++++ |++.+|+|.++.
T Consensus 450 ~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 485 (686)
T PLN02636 450 AAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLK 485 (686)
T ss_pred cCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHH
Confidence 99999999 999999998875
No 25
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=1.9e-54 Score=461.58 Aligned_cols=357 Identities=19% Similarity=0.236 Sum_probs=314.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-------CCC-HHHHHHHH-HcCCCCCcc-cc---------------
Q 041985 45 GLLTSEEQAIRKKVRECAEKELAPIVAEYWEKA-------EFP-FQVIPKLG-ALNIAAGTI-KG--------------- 99 (415)
Q Consensus 45 ~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~-------~~~-~~~~~~l~-~~Gl~~~~~-~~--------------- 99 (415)
+.+|++++++++.+++|+++++.|...++++.. .+| .+.|+++. +.||+++.+ ++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 568999999999999999999998877766432 367 68888875 999999977 53
Q ss_pred ---------cCCCCCCHHHHHHHHHHHHccCCchhhH-HHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCC
Q 041985 100 ---------YGCPGLCITGAAVALAEIARVDVSCSSF-ILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEP 169 (415)
Q Consensus 100 ---------~GG~g~~~~~~~~v~e~la~~~~~~~~~-~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~ 169 (415)
|||.|++..+.+.++|++++++.+.... ..++...+...|..+|+++||++||+++++|++++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999986432211 112222334568899999999999999999999999999999
Q ss_pred C-CCCCcCCCceEEEEeCCEEEEeeeeeeccCC--CCCCEEEEEEEeCCC----CCeeEEEEeCCCCCeeeeecCCcccc
Q 041985 170 D-YGSDASALRTTATKVEGGWILEGQKRWVGNS--TFADLLVILARNTTT----KQINAFIVKKHAPGLTATKIENKIGL 242 (415)
Q Consensus 170 ~-~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~--~~ad~~lv~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~G~ 242 (415)
+ +|||..++.|++++++|||+|||+|+|||++ +.||+++|+++++++ +++++|+||.+.|||++.+.|+++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 6899999999999999999999999999998 579999999997532 46889999999999999999999999
Q ss_pred ccc--CcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHH
Q 041985 243 RIV--QNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQ 319 (415)
Q Consensus 243 r~~--~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq 319 (415)
+++ ++++|+||||+||.+++|+.. +++......++.+|+..++.++|+++++++.+++|+++|++||++|+++|.+|
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq 719 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFL 719 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHH
Confidence 984 578999999999999999765 67888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH---------
Q 041985 320 QKLAQMLGNIQAMILAGWRVCNLYEDG-K-MTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK--------- 388 (415)
Q Consensus 320 ~~la~~~~~~~a~~~~~~~aa~~~~~~-~-~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r--------- 388 (415)
++|++|.++++++|++++++++.++.. . .....++++|.++++.+.++++.++|+|||.||+.+++++|
T Consensus 720 ~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~ 799 (822)
T PLN02876 720 SDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLR 799 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcc
Confidence 999999999999999999999999873 2 34457899999999999999999999999999999999999
Q ss_pred -------HHHHHHHHHHhCC
Q 041985 389 -------INSLLTGREITGF 401 (415)
Q Consensus 389 -------~~~~~i~~~~~g~ 401 (415)
+++.+|+|.+++-
T Consensus 800 i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 800 IADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred cccChHHHHHHHHHHHHHHh
Confidence 7888888887653
No 26
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-56 Score=428.65 Aligned_cols=354 Identities=25% Similarity=0.386 Sum_probs=323.6
Q ss_pred ccccccCCCCCCHHHHHHH----HHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHH
Q 041985 37 SDYYINFDGLLTSEEQAIR----KKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAA 111 (415)
Q Consensus 37 ~~~~~~~~~~l~~~~~~l~----~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~ 111 (415)
+|.+ .++..++.|+.++. ..+++|+.+... ....|+....+...++.|++.|++++.+ ++|||.|+++.+++
T Consensus 67 k~v~-~yPev~~~e~~~~~~~~~~pl~r~f~e~~d--~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~a 143 (634)
T KOG0137|consen 67 KDVF-PYPEVITSEQKELLEQFVLPLERFFEEVND--SKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYA 143 (634)
T ss_pred hhhc-CCcccCcHHHHHHHHhhhhhHHHhhhccch--hhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHH
Confidence 3445 56666788887765 445566665432 3446677899999999999999999988 99999999999999
Q ss_pred HHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCE--E
Q 041985 112 VALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGG--W 189 (415)
Q Consensus 112 ~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g--~ 189 (415)
.+.|.++.+|.++++.+..|..++...|..||+++||++|||++++|+.+++||+|||.+|||..+..|+|+...|| |
T Consensus 144 rl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y 223 (634)
T KOG0137|consen 144 RLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHY 223 (634)
T ss_pred HHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeE
Confidence 99999999999999988889888888899999999999999999999999999999999999999999999986654 9
Q ss_pred EEeeeeeeccCCCCCCEEEEEEEeCCC-------CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCC
Q 041985 190 ILEGQKRWVGNSTFADLLVILARNTTT-------KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDR 262 (415)
Q Consensus 190 ~lnG~K~~vs~~~~ad~~lv~a~~~~~-------~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~v 262 (415)
+|||.|.||+|+..||+++|+|+++.+ +++++|+|+++..||+-.++..++|.+++.+.+|.|+++.||.+++
T Consensus 224 ~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~env 303 (634)
T KOG0137|consen 224 VLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENV 303 (634)
T ss_pred EEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHh
Confidence 999999999999999999999999621 6799999999999999999999999999999999999999999999
Q ss_pred cCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 263 VPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCN 341 (415)
Q Consensus 263 lg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~ 341 (415)
||.+ +|++..+++++.+|+..++..+|.++++++++.+|+..|+|||++|.++..+|+++++|...++++++++|..+.
T Consensus 304 lG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg 383 (634)
T KOG0137|consen 304 LGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSG 383 (634)
T ss_pred cCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9997 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985 342 LYEDG--KMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLL 393 (415)
Q Consensus 342 ~~~~~--~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~ 393 (415)
.+|+. .+...++++.|+++++.+..++++++|++||+||+.+++++|++|+.
T Consensus 384 ~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ 437 (634)
T KOG0137|consen 384 LMDEVGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDA 437 (634)
T ss_pred ccccccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhh
Confidence 99983 45667899999999999999999999999999999999999955554
No 27
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1e-54 Score=427.67 Aligned_cols=345 Identities=28% Similarity=0.373 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHH-----HHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCC
Q 041985 49 SEEQAIRKKVRECAEKELAPIVAEY-----WEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDV 122 (415)
Q Consensus 49 ~~~~~l~~~~~~~~~~~l~p~~~~~-----~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~ 122 (415)
++|+++++.+++|+++++.|..... ++.+.+|+++++.|++.||+++.+ ++|||.|.+..+.+.++|++++.|.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 4678999999999999999876533 345678889999999999999977 9999999999999999999999998
Q ss_pred chhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCC
Q 041985 123 SCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNST 202 (415)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~ 202 (415)
++++.+..+. .+...+..+|+++|+++||+++.+|+.+.++++|||..|+|...+.++++++++||+|||+|.|||+++
T Consensus 81 ~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~ 159 (380)
T cd01152 81 PVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAH 159 (380)
T ss_pred CcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCcc
Confidence 8886522222 345568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHH
Q 041985 203 FADLLVILARNTTT----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLS 277 (415)
Q Consensus 203 ~ad~~lv~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~ 277 (415)
.+|+++|+++++++ +++++|+||++.|||++.+.|+++| +++++++.|+||+||.+++|+.+ +++......+.
T Consensus 160 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~ 237 (380)
T cd01152 160 YADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLN 237 (380)
T ss_pred ccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHH
Confidence 99999999997532 4688999999999999999998887 56889999999999999999875 67777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 041985 278 ISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAK 357 (415)
Q Consensus 278 ~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K 357 (415)
..|+..++. +..+++.+++|+++|.+||+||+++|.+|++|++|.+++++++++++++++.++.+......++++|
T Consensus 238 ~~r~~~~~~----~~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK 313 (380)
T cd01152 238 FERVSIGGS----AATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAK 313 (380)
T ss_pred hcccccchh----hhHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 878776544 4555556678888999999999999999999999999999999999999999988765556689999
Q ss_pred HHHHHHHHHHHHHHHHHhccCccCCc--------chHHH----------------HHHHHHHHHHhC
Q 041985 358 GWITSRARETVALGRELLGGNGISTD--------FHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 358 ~~~~~~a~~v~~~~~~i~Gg~g~~~~--------~~~~r----------------~~~~~i~~~~~g 400 (415)
+++++.+.++++.+++++||.||.++ ++++| +++.+|+|.++|
T Consensus 314 ~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 314 LFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988 79998 888888888876
No 28
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=5.6e-54 Score=425.75 Aligned_cols=336 Identities=24% Similarity=0.291 Sum_probs=301.5
Q ss_pred HHHHHHHHHhhccccHHHHHHhCC--------CC---HHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCC
Q 041985 55 RKKVRECAEKELAPIVAEYWEKAE--------FP---FQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDV 122 (415)
Q Consensus 55 ~~~~~~~~~~~l~p~~~~~~~~~~--------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~ 122 (415)
++.+++|+.+++.|.+.++|++.. || .++|++|++.||+++.+ ++|||.|.++.+++.+.|+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 578999999999999888887664 88 67899999999999977 9999999999999999999999999
Q ss_pred chhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeccCC
Q 041985 123 SCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV-EGGWILEGQKRWVGNS 201 (415)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~-~~g~~lnG~K~~vs~~ 201 (415)
++++.+.+|. +...+..+|+++||++|++++.+|+.++++++|||++|||...+.|+++++ +|||+|||+|.|+|++
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 8887665553 345678889999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CCC----CEEEEEEEeCCC----CCeeEEEEeCCC-----CCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-C
Q 041985 202 TFA----DLLVILARNTTT----KQINAFIVKKHA-----PGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-K 267 (415)
Q Consensus 202 ~~a----d~~lv~a~~~~~----~~~~~flV~~~~-----pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~ 267 (415)
..| ++++|+++++++ +++++|+||++. |||++.+.|+++|++++++++|.|+||+|| +|+.+ .
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 876 578899987532 368899999997 899999999999999999999999999999 77765 6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC--------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 268 SFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAP--------SATFQITQQKLAQMLGNIQAMILAGWRV 339 (415)
Q Consensus 268 ~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~--------l~~~~~iq~~la~~~~~~~a~~~~~~~a 339 (415)
++......+..+|+.+++.++|+++++++.+++|+++|++||+| +.++|.+|++|++|.+++++++++++++
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~a 316 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYT 316 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999999 8889999999999999999999999999
Q ss_pred HHHHHcCCCc--------------hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHHHH
Q 041985 340 CNLYEDGKMT--------------AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTG 395 (415)
Q Consensus 340 a~~~~~~~~~--------------~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~i~ 395 (415)
++.+|.+... ...++++|+++++.+.++++.+++++||.||.+++|++|+.|+.-+
T Consensus 317 a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~ 386 (407)
T cd01153 317 ATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARI 386 (407)
T ss_pred HHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhh
Confidence 9998865311 2335789999999999999999999999999999999997777743
No 29
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-53 Score=431.50 Aligned_cols=350 Identities=19% Similarity=0.232 Sum_probs=304.1
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCC---------C---HHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHH
Q 041985 49 SEEQAIRKKVRECAEKELAPIVAEYWEKAEF---------P---FQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALA 115 (415)
Q Consensus 49 ~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~---------~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 115 (415)
+.-..+++.+++|+++++.|...+.|+++.+ | .+.|+++.+.||+++.+ ++|||.|++......+.|
T Consensus 58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E 137 (622)
T PTZ00456 58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE 137 (622)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence 3446789999999999999998888876533 5 58999999999999977 999999999875556566
Q ss_pred HHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCE-EEEeee
Q 041985 116 EIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGG-WILEGQ 194 (415)
Q Consensus 116 ~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g-~~lnG~ 194 (415)
.+++.++++++....+. .+..+|..+|+++||++|||++.+|++++++++|||+.|||+..+.|+|++++|| |+|||+
T Consensus 138 ~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~ 216 (622)
T PTZ00456 138 LMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT 216 (622)
T ss_pred HHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence 67777776654433332 3456789999999999999999999999999999999999999999999998875 999999
Q ss_pred eeeccCCCCC----CEEEEEEEeCC----CCCeeEEEEeCCC----------CCeeeeecCCcccccccCcccEEeccee
Q 041985 195 KRWVGNSTFA----DLLVILARNTT----TKQINAFIVKKHA----------PGLTATKIENKIGLRIVQNGDVLLKNVF 256 (415)
Q Consensus 195 K~~vs~~~~a----d~~lv~a~~~~----~~~~~~flV~~~~----------pGv~v~~~~~~~G~r~~~~~~v~f~~v~ 256 (415)
|.|||++.++ ++++|+|++++ .+++++|+||++. +||++.+.++++|+++++++++.|||+
T Consensus 217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~- 295 (622)
T PTZ00456 217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS- 295 (622)
T ss_pred EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeCh-
Confidence 9999998763 67899999864 2679999999865 478888888999999999999999994
Q ss_pred eCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------------CCCcchhhHHHHHHH
Q 041985 257 VPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQF------------GAPSATFQITQQKLA 323 (415)
Q Consensus 257 Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~f------------g~~l~~~~~iq~~la 323 (415)
.+++||.+ +|+..+...++..|+..++.++|+++++++.+++|+++|+|| +++|+++|.+|++|+
T Consensus 296 --~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~ 373 (622)
T PTZ00456 296 --VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNIL 373 (622)
T ss_pred --hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHH
Confidence 68999986 688888899999999999999999999999999999999984 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC---c----------hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH--
Q 041985 324 QMLGNIQAMILAGWRVCNLYEDGKM---T----------AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-- 388 (415)
Q Consensus 324 ~~~~~~~a~~~~~~~aa~~~~~~~~---~----------~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-- 388 (415)
+|.+.++++|++++.++..+|.+.. . ...++++|.++++.+.++++.++|+|||+||+++++++|
T Consensus 374 ~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~ 453 (622)
T PTZ00456 374 FAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQIL 453 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHH
Confidence 9999999999999999999986421 1 224789999999999999999999999999999999999
Q ss_pred --------------HHH-HHHHHHHhCCC
Q 041985 389 --------------INS-LLTGREITGFA 402 (415)
Q Consensus 389 --------------~~~-~~i~~~~~g~~ 402 (415)
|++ ++|+|.++|.+
T Consensus 454 RDari~~i~eGt~~iq~~dli~rkllg~~ 482 (622)
T PTZ00456 454 RDARIGTLYEGTTGIQALDFIGRKVLSLK 482 (622)
T ss_pred HHhhcccccCChHHHHHHHHHHHHhhCCC
Confidence 775 68899988643
No 30
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2.3e-53 Score=417.97 Aligned_cols=334 Identities=18% Similarity=0.207 Sum_probs=294.2
Q ss_pred HHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhH
Q 041985 57 KVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLA 135 (415)
Q Consensus 57 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~ 135 (415)
+++++++. +.|.+.++|+++.+|++.|+.|++.||+++.+ ++|||.|+++.+.+.++|++++.|+++++.+.+|.. .
T Consensus 2 ~~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~ 79 (377)
T cd01163 2 RARPLAAR-IAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-F 79 (377)
T ss_pred hHHHHHHH-HhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-H
Confidence 35566654 77888889999999999999999999999977 999999999999999999999999999988777764 4
Q ss_pred HHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeCC
Q 041985 136 MLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTT 215 (415)
Q Consensus 136 ~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~ 215 (415)
...+..+|+++||++|++++.+|++++ .++|||+.|+ .....+++++++|||+|||+|.|||++..||+++|++++++
T Consensus 80 ~~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~ 157 (377)
T cd01163 80 VEALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE 157 (377)
T ss_pred HHHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC
Confidence 467888999999999999999999765 5999998775 56667778888899999999999999999999999999764
Q ss_pred CCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 216 TKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGV 294 (415)
Q Consensus 216 ~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~a 294 (415)
++.++|+||.+.|||++.+.|+++|++++++++|.|+||+||.+++++.. .++. ....+...|+..++.++|+++++
T Consensus 158 -~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~a 235 (377)
T cd01163 158 -GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAA 235 (377)
T ss_pred -CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999875 3443 22344677899999999999999
Q ss_pred HHHHHHHhhhhc-ccCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---C---------chhHHHHHH
Q 041985 295 YDMCHRYLMERK-QFGA----PSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK---M---------TAGHASLAK 357 (415)
Q Consensus 295 l~~a~~~a~~R~-~fg~----~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~---~---------~~~~~~~~K 357 (415)
++.+++|+++|+ +||+ ++.++|.+|++|++|.++++++|++++++++.+|.+. . ....++++|
T Consensus 236 l~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK 315 (377)
T cd01163 236 LDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAK 315 (377)
T ss_pred HHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 999999999995 7776 5789999999999999999999999999999988641 1 134578999
Q ss_pred HHHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHHHHH
Q 041985 358 GWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGR 396 (415)
Q Consensus 358 ~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~i~~ 396 (415)
.++++.+.++++.++|++||.||++++|++|+.|+..+-
T Consensus 316 ~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~ 354 (377)
T cd01163 316 VVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTH 354 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhh
Confidence 999999999999999999999999999999988887653
No 31
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=9.8e-53 Score=433.41 Aligned_cols=352 Identities=21% Similarity=0.268 Sum_probs=303.7
Q ss_pred CCHHHHHHHHHHHHHHHhh--c-----------cc-cHHHHHHhCCCCHHHHHHHHHcCCCCCcccccCCCCCCHHHHHH
Q 041985 47 LTSEEQAIRKKVRECAEKE--L-----------AP-IVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAV 112 (415)
Q Consensus 47 l~~~~~~l~~~~~~~~~~~--l-----------~p-~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~ 112 (415)
|..+..+.++++.+++.+. + .| ....+++..+++.+.++++.+.|+++..+++ +|.+ +....+.
T Consensus 60 l~g~~~~~r~~~~~~~~~~p~f~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe-~g~~-~~~~~~~ 137 (680)
T PLN02312 60 LDGHNLEDRDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTE-TGPE-AELRKLA 137 (680)
T ss_pred hCCccHHHHHHHHHHHhcCccccccccccccccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCC-CCCc-cHHHHHH
Confidence 3334456677777776532 1 01 1123456678888999999999999987633 2333 6888889
Q ss_pred HHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEE
Q 041985 113 ALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWI 190 (415)
Q Consensus 113 v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~ 190 (415)
++|++++.|++++..+.+|..++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|||+++ +|+|+
T Consensus 138 ~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defV 217 (680)
T PLN02312 138 LLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFV 217 (680)
T ss_pred HHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEE
Confidence 9999999998887777888878888899999999999999999999999999999999999999999999998 46799
Q ss_pred Ee-----eeeeeccCC-CCCCEEEEEEEeCC---CCCeeEEEEe---CC---CCCeeeeecCCcccccccCcccEEecce
Q 041985 191 LE-----GQKRWVGNS-TFADLLVILARNTT---TKQINAFIVK---KH---APGLTATKIENKIGLRIVQNGDVLLKNV 255 (415)
Q Consensus 191 ln-----G~K~~vs~~-~~ad~~lv~a~~~~---~~~~~~flV~---~~---~pGv~v~~~~~~~G~r~~~~~~v~f~~v 255 (415)
|| |+|+||+|+ ..||+++|+|++.. ..|+++|+|| .+ .|||++.+..+++|+++.+++.|.||||
T Consensus 218 LNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnV 297 (680)
T PLN02312 218 INTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNL 297 (680)
T ss_pred ECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccE
Confidence 99 799999998 79999999999853 2579999998 33 8999999999999999999999999999
Q ss_pred eeCCCCCcCC-----------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC----C---
Q 041985 256 FVPDEDRVPG-----------------FKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGA----P--- 311 (415)
Q Consensus 256 ~Vp~~~vlg~-----------------~~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~----~--- 311 (415)
+||.+++|+. ..++......+..+|+.+++.++|+++++++.+++|+++|+|||+ |
T Consensus 298 rVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~ 377 (680)
T PLN02312 298 RIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVL 377 (680)
T ss_pred EECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccch
Confidence 9999999984 246777778899999999999999999999999999999999995 4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchH
Q 041985 312 SATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK-----MTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHV 386 (415)
Q Consensus 312 l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~-----~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~ 386 (415)
|++||.+|++|++|.+++++++.....+.+.++.+. +....++++|.++++.+.+++++|+|+|||+||+.++++
T Consensus 378 I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l 457 (680)
T PLN02312 378 LLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRV 457 (680)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcH
Confidence 999999999999999999999888888777666532 345678999999999999999999999999999999999
Q ss_pred HH----------------HHHHHHHHHHhC
Q 041985 387 AK----------------INSLLTGREITG 400 (415)
Q Consensus 387 ~r----------------~~~~~i~~~~~g 400 (415)
++ |++.+|+|.+++
T Consensus 458 ~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 487 (680)
T PLN02312 458 GQLKAEYDVQSTFEGDNNVLMQQVSKALLA 487 (680)
T ss_pred HHHHHhhhhheeecCcHHHHHHHHHHHHHH
Confidence 99 889999988765
No 32
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=3.3e-50 Score=399.22 Aligned_cols=326 Identities=22% Similarity=0.300 Sum_probs=284.1
Q ss_pred HHHHHHHHhhccccHHHHHHhCC------CC---HHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchh
Q 041985 56 KKVRECAEKELAPIVAEYWEKAE------FP---FQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCS 125 (415)
Q Consensus 56 ~~~~~~~~~~l~p~~~~~~~~~~------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~ 125 (415)
.+..++++.+ .|...++|+.+. +| .++++++.+.||+++ + .++|+.| ......+.+.++..+.+.+
T Consensus 35 ~~~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~ 110 (418)
T cd01154 35 YELARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLL 110 (418)
T ss_pred HHHHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhcc
Confidence 4455666665 788888888777 78 778999999999999 5 6676655 3444556778888777766
Q ss_pred hHHHHhhhhHHHHHHccCCHHHHHhHhHHHhccc----ceeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeccC
Q 041985 126 SFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLK----TIASWALTEPDYGSDASALRTTATKV-EGGWILEGQKRWVGN 200 (415)
Q Consensus 126 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~----~~~~~a~tE~~~gsd~~~~~t~a~~~-~~g~~lnG~K~~vs~ 200 (415)
+.+.+|. .+...|..+|+++|+ +||+++++|+ +++|+++|||++|||+..+.|+|+++ +|+|+|||+|+|+|+
T Consensus 111 ~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~ 188 (418)
T cd01154 111 CPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASA 188 (418)
T ss_pred CcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecC
Confidence 6655565 477789999988865 6999999997 89999999999999999999999999 889999999999999
Q ss_pred CCCCCEEEEEEEeCCC----CCeeEEEEeCCCC-----CeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChH
Q 041985 201 STFADLLVILARNTTT----KQINAFIVKKHAP-----GLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQ 270 (415)
Q Consensus 201 ~~~ad~~lv~a~~~~~----~~~~~flV~~~~p-----Gv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~ 270 (415)
+ .||+++|+|+++++ +++++|+||++.| ||++.+.|+++|+|++++++|.|+||+ +++||.. +|+.
T Consensus 189 a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~ 264 (418)
T cd01154 189 P-LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIY 264 (418)
T ss_pred c-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHH
Confidence 9 99999999998642 6799999999875 999999999999999999999999984 7889875 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--
Q 041985 271 DTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKM-- 348 (415)
Q Consensus 271 ~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~-- 348 (415)
.....++.+|+..++.++|+++++++.+++|+++|++||++|+++|.+|++|++|.+++++++++++++++.++....
T Consensus 265 ~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~ 344 (418)
T cd01154 265 YILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADK 344 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999886421
Q ss_pred c------hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHHHHH
Q 041985 349 T------AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINS 391 (415)
Q Consensus 349 ~------~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~ 391 (415)
. ...++++|+++++.+.++++.++|++||.||+.+++++|+.|
T Consensus 345 ~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~R 393 (418)
T cd01154 345 PVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHR 393 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHh
Confidence 1 224678999999999999999999999999999999999333
No 33
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=3.5e-48 Score=380.15 Aligned_cols=322 Identities=18% Similarity=0.153 Sum_probs=272.8
Q ss_pred HHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHH
Q 041985 58 VRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAM 136 (415)
Q Consensus 58 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~ 136 (415)
++++.+. +.|.+.++|+++.||.+.|+.|++.||+++.+ ++|||.|+++.+.+.++|++++.|+++++.+..++ ...
T Consensus 3 ~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~ 80 (370)
T cd01159 3 AEDLAPL-IRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THS 80 (370)
T ss_pred HHHHHHH-HHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHH
Confidence 4455554 77888999999999999999999999999977 99999999999999999999999999887655554 344
Q ss_pred HHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeCCC
Q 041985 137 LTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTT 216 (415)
Q Consensus 137 ~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~ 216 (415)
..+..+++++|++.|++.. ++ ..+ | ...+.++|++++|||+|||+|.|||++..+|+++|.|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~ 147 (370)
T cd01159 81 RMLAAFPPEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDD 147 (370)
T ss_pred HHHHhCCHHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCC
Confidence 5677889999999887642 11 111 1 123567999999999999999999999999999999997532
Q ss_pred ---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCCC-------ChH---HHHHHHHHHHHHH
Q 041985 217 ---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFK-------SFQ---DTITTLSISRLMV 283 (415)
Q Consensus 217 ---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~-------~~~---~~~~~~~~~r~~~ 283 (415)
.++++|+||++ ||++.+.|+++|++++++++|.|+||+||++++|+..+ ++. .........|+.+
T Consensus 148 ~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 225 (370)
T cd01159 148 DGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSF 225 (370)
T ss_pred CCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHH
Confidence 46899999998 99999999999999999999999999999999997532 211 2233456778999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----C---chhH
Q 041985 284 AWQSIGIAMGVYDMCHRYLMERKQF---GAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK-----M---TAGH 352 (415)
Q Consensus 284 ~a~~~G~a~~al~~a~~~a~~R~~f---g~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~-----~---~~~~ 352 (415)
+++++|+++++++.+.+|+++|.+| |++|+++|.+|++|++|.+.++++|++++.+++.++.+. . ....
T Consensus 226 aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~ 305 (370)
T cd01159 226 AAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERAR 305 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999999999999999987 788999999999999999999999999999999988641 1 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHHHHH
Q 041985 353 ASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGR 396 (415)
Q Consensus 353 ~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~i~~ 396 (415)
++++|.++++.+.++++.+++++||.||.++++++|.+|+..+-
T Consensus 306 ~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~ 349 (370)
T cd01159 306 IRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAA 349 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHH
Confidence 78899999999999999999999999999999999966666433
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-47 Score=380.76 Aligned_cols=311 Identities=18% Similarity=0.217 Sum_probs=263.0
Q ss_pred HHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhccc-
Q 041985 82 QVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLK- 159 (415)
Q Consensus 82 ~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~- 159 (415)
++++.+.+.|+..+.. +++| .+. ....+......+...+.+.+.+.++ .+...+..+++++|+++|+|++.+|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg~~ 165 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-SGA-FVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSDRY 165 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-chH-HHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCCCc
Confidence 4556666789988755 5554 221 2222232333344445444443333 45556777788999999999999997
Q ss_pred ------------ceeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeccCCCCCCEEEEEEEeCCCCCeeEEEEeC
Q 041985 160 ------------TIASWALTEPDYGSDASALRTTATKV-EGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKK 226 (415)
Q Consensus 160 ------------~~~~~a~tE~~~gsd~~~~~t~a~~~-~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~~~~~~flV~~ 226 (415)
+++++++|||+.|||+..+.|+|+++ +|+|+|||+|+||| ++.||+++|+|+++ +++++|+||+
T Consensus 166 ~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp~ 242 (538)
T PRK11561 166 DSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVPR 242 (538)
T ss_pred ccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEEC
Confidence 45699999999999999999999994 67799999999999 68999999999996 6899999999
Q ss_pred CCC-----CeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 227 HAP-----GLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHR 300 (415)
Q Consensus 227 ~~p-----Gv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~ 300 (415)
+.| ||++.+.++++|+|++++++|+|+||. +++||.+ +|+..+...++..|+..++.++|+++++++.+++
T Consensus 243 ~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~ 319 (538)
T PRK11561 243 FLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIY 319 (538)
T ss_pred CCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 799999999999999999999999993 7899986 7899999999999999999999999999999999
Q ss_pred HhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCch------hHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 301 YLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTA------GHASLAKGWITSRARETVALGREL 374 (415)
Q Consensus 301 ~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~------~~~~~~K~~~~~~a~~v~~~~~~i 374 (415)
|+++|++||+||+++|.+|++|++|.+++++++++++++++.+|.+.... ...+++|.++++.+.+++++++|+
T Consensus 320 yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv 399 (538)
T PRK11561 320 HAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAMEV 399 (538)
T ss_pred HHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999864321 234689999999999999999999
Q ss_pred hccCccCCcchHHH----------------HHHHHHHHHHhCCC
Q 041985 375 LGGNGISTDFHVAK----------------INSLLTGREITGFA 402 (415)
Q Consensus 375 ~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~ 402 (415)
+||.||+++++++| |+++.+.|.+.+.|
T Consensus 400 ~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~~~ 443 (538)
T PRK11561 400 LGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQP 443 (538)
T ss_pred cCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhcCh
Confidence 99999999999999 77777888887643
No 35
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=7.6e-47 Score=364.75 Aligned_cols=303 Identities=35% Similarity=0.550 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHccCCchhhHHH
Q 041985 50 EEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFIL 129 (415)
Q Consensus 50 ~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~ 129 (415)
++.++++.+++|+.+++.|...+.+.....++ +.+++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~------------------------------------ 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRETPEEPW---ELLAELGLL------------------------------------ 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHhhCCCCH---HHHHHHHHH------------------------------------
Confidence 57789999999999999998876655444554 444445544
Q ss_pred HhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEE
Q 041985 130 VHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVI 209 (415)
Q Consensus 130 ~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv 209 (415)
++..+|..+|+++|+++|++.+.+|++++++++|||.+|+|...+.++++++++||+|||+|.|+|++..+|+++|
T Consensus 43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv 118 (327)
T cd00567 43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV 118 (327)
T ss_pred ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence 3445678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHHH
Q 041985 210 LARNTTT----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMVA 284 (415)
Q Consensus 210 ~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~ 284 (415)
+++++++ +++.+|+||++.|||++.+.|+++|+++++++.+.|+||+||.+++++.. .++......+...|+..+
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~a 198 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLA 198 (327)
T ss_pred EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 9998642 46789999999999999999999999999999999999999999999875 566677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHH
Q 041985 285 WQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKM-TAGHASLAKGWITSR 363 (415)
Q Consensus 285 a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~-~~~~~~~~K~~~~~~ 363 (415)
+.++|+++++++.+++|+++|.+||+|+.++|.+|++|+++.+.+++++++++.+++.++.+.. ....+.++|.++++.
T Consensus 199 a~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~ 278 (327)
T cd00567 199 AVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEA 278 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988654 566789999999999
Q ss_pred HHHHHHHHHHHhccCccCCcchHHHHHHHHHH
Q 041985 364 ARETVALGRELLGGNGISTDFHVAKINSLLTG 395 (415)
Q Consensus 364 a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~i~ 395 (415)
+.++++.+++++||.||+.++|++|..|+...
T Consensus 279 a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~ 310 (327)
T cd00567 279 AREVADLAMQIHGGRGYSREYPVERYLRDARA 310 (327)
T ss_pred HHHHHHHHHHHccCccccCCCHHHHHHHhhhc
Confidence 99999999999999999999999998887644
No 36
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-46 Score=384.72 Aligned_cols=279 Identities=23% Similarity=0.299 Sum_probs=248.4
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----ee
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILE-----GQ 194 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~ln-----G~ 194 (415)
+.....+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+
T Consensus 89 ~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~ 168 (646)
T PTZ00460 89 PQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAV 168 (646)
T ss_pred cCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeE
Confidence 3333344567667777889999999999999999999999999999999999999999999996 5779998 99
Q ss_pred eeeccC-CCCCCEEEEEEEeCC---CCCeeEEEEeC-------CCCCeeeeecCCcccccccCcccEEecceeeCCCCCc
Q 041985 195 KRWVGN-STFADLLVILARNTT---TKQINAFIVKK-------HAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV 263 (415)
Q Consensus 195 K~~vs~-~~~ad~~lv~a~~~~---~~~~~~flV~~-------~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vl 263 (415)
|+|++| +..||+++|+|++.. +.|+++|+||. ..|||++.+..+++|+++.+++.+.||||+||.+++|
T Consensus 169 K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlL 248 (646)
T PTZ00460 169 KFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLL 248 (646)
T ss_pred EEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhC
Confidence 999998 688999999999852 25799999993 2599999999999999999999999999999999999
Q ss_pred CC------CC-----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC------CcchhhHHHHHHHHH
Q 041985 264 PG------FK-----S-FQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGA------PSATFQITQQKLAQM 325 (415)
Q Consensus 264 g~------~~-----~-~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~------~l~~~~~iq~~la~~ 325 (415)
|. .+ + +......+..+|+.+++.++|+++++++++++|+++|++||+ ||++||.+|++|++|
T Consensus 249 g~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~~ 328 (646)
T PTZ00460 249 ARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLPL 328 (646)
T ss_pred CcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHHH
Confidence 85 11 3 566677778999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcC------CC------chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-----
Q 041985 326 LGNIQAMILAGWRVCNLYEDG------KM------TAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----- 388 (415)
Q Consensus 326 ~~~~~a~~~~~~~aa~~~~~~------~~------~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----- 388 (415)
.+++++++.+.+++++.++.. .+ ....++++|.++++.+.+++++|+|+|||+||+.++++++
T Consensus 329 la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda 408 (646)
T PTZ00460 329 LAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFDM 408 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHHh
Confidence 999999999999999988752 11 2456899999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHhC
Q 041985 389 -----------INSLLTGREITG 400 (415)
Q Consensus 389 -----------~~~~~i~~~~~g 400 (415)
+++.+|+|.+++
T Consensus 409 ~~~~t~eG~n~vl~~~iar~ll~ 431 (646)
T PTZ00460 409 SPNITLEGENQIMYLQLARYLLK 431 (646)
T ss_pred ccceeecCcHHHHHHHHHHHHHH
Confidence 888999988875
No 37
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=7.9e-46 Score=381.22 Aligned_cols=296 Identities=24% Similarity=0.271 Sum_probs=262.1
Q ss_pred CHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe
Q 041985 106 CITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV 185 (415)
Q Consensus 106 ~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~ 185 (415)
++.+...+.|++++.|++++..+.+|..++...|..+|+++|+++|||.+.+|++++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67888899999999998887667778777888899999999999999999999999999999999999999999999998
Q ss_pred C--CEEEEe-----eeeeeccCCC-CCCEEEEEEEeCC---CCCeeEEEEeCC-------CCCeeeeecCCcccccccCc
Q 041985 186 E--GGWILE-----GQKRWVGNST-FADLLVILARNTT---TKQINAFIVKKH-------APGLTATKIENKIGLRIVQN 247 (415)
Q Consensus 186 ~--~g~~ln-----G~K~~vs~~~-~ad~~lv~a~~~~---~~~~~~flV~~~-------~pGv~v~~~~~~~G~r~~~~ 247 (415)
+ ++|+|| |+|+|++|+. .|++++|+|++.. +.|+++|+||.+ .|||++.+.++++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999975 5999999999742 268999999963 39999999999999999999
Q ss_pred ccEEecceeeCCCCCcCC----------------C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 041985 248 GDVLLKNVFVPDEDRVPG----------------F-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGA 310 (415)
Q Consensus 248 ~~v~f~~v~Vp~~~vlg~----------------~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~ 310 (415)
+.+.||||+||.+++|+. + .++..+...+..+|+.+++.++|.++++++++++|++.|++||+
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999985 2 34566777888999999999999999999999999999999999
Q ss_pred C-------cchhhHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHcCC-----CchhHHHHHHHHHHHHHHHHHHHH
Q 041985 311 P-------SATFQITQQKLAQMLGNIQAMILAGWRVC----N---LYEDGK-----MTAGHASLAKGWITSRARETVALG 371 (415)
Q Consensus 311 ~-------l~~~~~iq~~la~~~~~~~a~~~~~~~aa----~---~~~~~~-----~~~~~~~~~K~~~~~~a~~v~~~~ 371 (415)
| |++||.+|++|+++.+.+++++....... + ..+.+. +....++++|.++++.+.++++.|
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~ 399 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQEC 399 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999998775443322 2 333332 234568899999999999999999
Q ss_pred HHHhccCccCCcchHHH----------------HHHHHHHHHHhCC
Q 041985 372 RELLGGNGISTDFHVAK----------------INSLLTGREITGF 401 (415)
Q Consensus 372 ~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~ 401 (415)
+|+|||+||+.++++++ |++.+++|.+++.
T Consensus 400 rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~ 445 (610)
T cd01150 400 REACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKK 445 (610)
T ss_pred HHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHH
Confidence 99999999999999999 8899999998874
No 38
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=9.3e-44 Score=354.49 Aligned_cols=273 Identities=23% Similarity=0.266 Sum_probs=244.4
Q ss_pred HHHHc-CCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeE
Q 041985 86 KLGAL-NIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIAS 163 (415)
Q Consensus 86 ~l~~~-Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~ 163 (415)
.+++. ||+++.+ ++|||.|++..+.+.++|++++.+++++..+..|..++..++..+|+++||++|||++++|+.+++
T Consensus 58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A 137 (520)
T PTZ00457 58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG 137 (520)
T ss_pred chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence 47799 9999977 999999999999999999999988776655556665666778889999999999999999999999
Q ss_pred EEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeccCCCCCCEEEEEEEeCC----------CCCeeEEEEeCCCCCee
Q 041985 164 WALTEPDYGSDASALRTTATKV-EGGWILEGQKRWVGNSTFADLLVILARNTT----------TKQINAFIVKKHAPGLT 232 (415)
Q Consensus 164 ~a~tE~~~gsd~~~~~t~a~~~-~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~----------~~~~~~flV~~~~pGv~ 232 (415)
++++| +.|||+..+.|+|+++ +|+|+|||+|.|+ ++..||+++|+|++++ .+++++|+||++.|||+
T Consensus 138 ~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVt 215 (520)
T PTZ00457 138 WATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS 215 (520)
T ss_pred EEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceE
Confidence 99988 8899999999999986 5579999999976 8999999999999742 13689999999999999
Q ss_pred eeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 041985 233 ATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAP 311 (415)
Q Consensus 233 v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~ 311 (415)
+.. ++|+|||| |.+++||.. +|++.....++.+|+.+++.++|+++++++.+.+|++
T Consensus 216 v~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-------- 273 (520)
T PTZ00457 216 VNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-------- 273 (520)
T ss_pred Eec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 862 69999997 999999885 7898889999999999999999999999999999986
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHHHHH---HHHHHHHHHHHHHhccCccCCcchHH
Q 041985 312 SATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG-KMTAGHASLAKGWIT---SRARETVALGRELLGGNGISTDFHVA 387 (415)
Q Consensus 312 l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~-~~~~~~~~~~K~~~~---~~a~~v~~~~~~i~Gg~g~~~~~~~~ 387 (415)
+|.+|++||+|.+.++++|+++|.+++.+|.+ .+...+++++|+|++ +.+..++++++| +++|+|
T Consensus 274 ---~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E 342 (520)
T PTZ00457 274 ---EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLE 342 (520)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHH
Confidence 38999999999999999999999999999997 456888999999999 888888888877 899999
Q ss_pred HHHHHH
Q 041985 388 KINSLL 393 (415)
Q Consensus 388 r~~~~~ 393 (415)
|++|+.
T Consensus 343 ~~~rd~ 348 (520)
T PTZ00457 343 KCFANA 348 (520)
T ss_pred HHHHHH
Confidence 966655
No 39
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.1e-45 Score=321.77 Aligned_cols=307 Identities=20% Similarity=0.247 Sum_probs=269.6
Q ss_pred HHHHHHH----HcCCCCCccc---ccCCCCCCHHHHHHHHHHHHccCCchh-hHHHHhhhhHHHHHHccCCHHHHHhHhH
Q 041985 82 QVIPKLG----ALNIAAGTIK---GYGCPGLCITGAAVALAEIARVDVSCS-SFILVHSSLAMLTIAQYGSEEQKQKYLP 153 (415)
Q Consensus 82 ~~~~~l~----~~Gl~~~~~~---~~GG~g~~~~~~~~v~e~la~~~~~~~-~~~~~~~~~~~~~l~~~g~~~qk~~~l~ 153 (415)
..+++|+ ..|+++++++ ..=|.|++..+++.++|.++++-.+.- +-..+..+-....|.+||+++||.+||-
T Consensus 27 p~iekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~ 106 (392)
T KOG1469|consen 27 PVIEKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLI 106 (392)
T ss_pred chHHHHHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhH
Confidence 4455554 5799999652 223579999999999999998753211 1111222234557899999999999999
Q ss_pred HHhcccceeEEEecCCCC-CCCcCCCceEEEEeCCEEEEeeeeeeccCC--CCCCEEEEEEEeCCC-----CCeeEEEEe
Q 041985 154 SMAQLKTIASWALTEPDY-GSDASALRTTATKVEGGWILEGQKRWVGNS--TFADLLVILARNTTT-----KQINAFIVK 225 (415)
Q Consensus 154 ~l~~g~~~~~~a~tE~~~-gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~--~~ad~~lv~a~~~~~-----~~~~~flV~ 225 (415)
++.+|+...||+||||+- .||+.++++...++++.|+|||+|||+||+ +-+.+.++..+++.. .+.++++||
T Consensus 107 PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVp 186 (392)
T KOG1469|consen 107 PLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVP 186 (392)
T ss_pred HHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEe
Confidence 999999999999999995 899999999999999999999999999997 668888888888654 568999999
Q ss_pred CCCCCeeeeecCCccccccc--CcccEEecceeeCCCCCc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041985 226 KHAPGLTATKIENKIGLRIV--QNGDVLLKNVFVPDEDRV-PGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYL 302 (415)
Q Consensus 226 ~~~pGv~v~~~~~~~G~r~~--~~~~v~f~~v~Vp~~~vl-g~~~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a 302 (415)
.++|||+|.++.+.+|..+. ++.+|.|+||+||..|++ |++.||++.+..+..+|++.|.-.+|.++++++...+.+
T Consensus 187 M~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~ 266 (392)
T KOG1469|consen 187 MNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERA 266 (392)
T ss_pred cCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999998776 467999999999999986 556899999999999999999999999999999999999
Q ss_pred hhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 041985 303 MERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG--KMTAGHASLAKGWITSRARETVALGRELLGGNGI 380 (415)
Q Consensus 303 ~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~--~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~ 380 (415)
.+|..||+++..+..+.+.||+...++|.+|+++..+++.+|.- +....+++|+|+.++.++.++.+.++|++||.|.
T Consensus 267 ~sRiaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~ 346 (392)
T KOG1469|consen 267 LSRIAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGV 346 (392)
T ss_pred HHHHHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999973 5566778999999999999999999999999999
Q ss_pred CCcchHHH
Q 041985 381 STDFHVAK 388 (415)
Q Consensus 381 ~~~~~~~r 388 (415)
..+.|+.+
T Consensus 347 s~~~~la~ 354 (392)
T KOG1469|consen 347 SSDTPLAN 354 (392)
T ss_pred CCCceeeE
Confidence 99999988
No 40
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=4.4e-43 Score=360.98 Aligned_cols=273 Identities=25% Similarity=0.342 Sum_probs=238.4
Q ss_pred HHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----eeeeeccC
Q 041985 128 ILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILE-----GQKRWVGN 200 (415)
Q Consensus 128 ~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~ln-----G~K~~vs~ 200 (415)
+.+|..+....|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +++|+|| |+|+|++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 3456667777899999999999999999999999999999999999999999999998 5789998 99999999
Q ss_pred C-CCCCEEEEEEEeCC---CCCeeEEEEeCC-------CCCeeeeecCCccc---ccccCcccEEecceeeCCCCCcCCC
Q 041985 201 S-TFADLLVILARNTT---TKQINAFIVKKH-------APGLTATKIENKIG---LRIVQNGDVLLKNVFVPDEDRVPGF 266 (415)
Q Consensus 201 ~-~~ad~~lv~a~~~~---~~~~~~flV~~~-------~pGv~v~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~vlg~~ 266 (415)
+ ..|++++|+|++.. +.|+++|+||.+ .|||++.+.++++| +++.+++.|.||||+||.+++|+..
T Consensus 179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~ 258 (664)
T PLN02443 179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL 258 (664)
T ss_pred CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence 6 78999999999742 267999999975 89999999999999 5678999999999999999999752
Q ss_pred -----CCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcc-------hhhHHHHHHHHHH
Q 041985 267 -----KSF--------QDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSA-------TFQITQQKLAQML 326 (415)
Q Consensus 267 -----~~~--------~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~-------~~~~iq~~la~~~ 326 (415)
+|. ......+..+|+.+++.++|+++++++++++|+++|+|||+|++ +++.+|++|+++.
T Consensus 259 ~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~l 338 (664)
T PLN02443 259 SKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLL 338 (664)
T ss_pred cccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHH
Confidence 221 12335677889999999999999999999999999999999987 4445599999999
Q ss_pred HHHHHHHHHHHHHHHHHHc-------CCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH------
Q 041985 327 GNIQAMILAGWRVCNLYED-------GKM-----TAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK------ 388 (415)
Q Consensus 327 ~~~~a~~~~~~~aa~~~~~-------~~~-----~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r------ 388 (415)
+.+++++.+.+++++.++. +.. ....++++|.++++.+.+++++|+|+|||+||+.++++++
T Consensus 339 a~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~ 418 (664)
T PLN02443 339 ASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYV 418 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhh
Confidence 9999999999999887763 111 2234789999999999999999999999999999999998
Q ss_pred ----------HHHHHHHHHHhC
Q 041985 389 ----------INSLLTGREITG 400 (415)
Q Consensus 389 ----------~~~~~i~~~~~g 400 (415)
+++.+|+|++++
T Consensus 419 ~~~t~EGdn~Vl~~~iar~ll~ 440 (664)
T PLN02443 419 PACTYEGDNVVLLLQVARFLMK 440 (664)
T ss_pred cceeecCcHHHHHHHHHHHHHH
Confidence 888889988765
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-34 Score=275.39 Aligned_cols=324 Identities=23% Similarity=0.308 Sum_probs=272.2
Q ss_pred HhCCCCHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHH
Q 041985 75 EKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPS 154 (415)
Q Consensus 75 ~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~ 154 (415)
+.+++-...|..|.+.|.+.....+-+ . -+......+.|.++.+|.+++.-+.+|..+...++..+|++..++ |+..
T Consensus 74 ~qRel~~~r~~~l~~~gv~~~~~~~~~-~-~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~ 150 (661)
T KOG0135|consen 74 EQRELCMKRIKRLVELGVFKFWLVEDG-P-EAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQK 150 (661)
T ss_pred HHHHHHHHHHHHHHHhccCcceeecCc-h-HHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhh
Confidence 334444446667777777765442111 1 145567889999999999999999999999999999999999998 9999
Q ss_pred HhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----eeeeeccCC-CCCCEEEEEEEeC--C-CCCeeEEE
Q 041985 155 MAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILE-----GQKRWVGNS-TFADLLVILARNT--T-TKQINAFI 223 (415)
Q Consensus 155 l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~ln-----G~K~~vs~~-~~ad~~lv~a~~~--~-~~~~~~fl 223 (415)
+-+-+.++||||||-++|||..+++|||+.+ .+.|+|| ..|+||.|+ ..|.+.+|+|+.- + +.|++.|+
T Consensus 151 ~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~Fi 230 (661)
T KOG0135|consen 151 TENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFI 230 (661)
T ss_pred hhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEE
Confidence 9999999999999999999999999999998 4679999 899999994 7899999999973 2 37899999
Q ss_pred EeCC-------CCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-----CCh------------HHHHHHHHHH
Q 041985 224 VKKH-------APGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-----KSF------------QDTITTLSIS 279 (415)
Q Consensus 224 V~~~-------~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-----~~~------------~~~~~~~~~~ 279 (415)
|+.. .|||+|.+.-.|.|++|.+++-++|+|++||.+++|... +|. ......+..+
T Consensus 231 iqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~G 310 (661)
T KOG0135|consen 231 IQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSG 310 (661)
T ss_pred EEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccc
Confidence 9854 689999999999999999999999999999999998441 221 2233456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Q 041985 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGA-------PSATFQITQQKLAQMLGNIQAMILAGWRVCNLYED------- 345 (415)
Q Consensus 280 r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~-------~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~------- 345 (415)
|+.++..++|.++-++.+|++|+..|+|||. +|.+||..|+||-.+.+...+++.........+.+
T Consensus 311 RvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~ 390 (661)
T KOG0135|consen 311 RVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNE 390 (661)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999984 68899999999999999999998887776665543
Q ss_pred C---CCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCC
Q 041985 346 G---KMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGF 401 (415)
Q Consensus 346 ~---~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~ 401 (415)
+ ...+..++..|.++++...++.++|.+.|||+||...+.+.. |+.+++++.+++.
T Consensus 391 ~~n~keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~ 465 (661)
T KOG0135|consen 391 GVNSKEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQ 465 (661)
T ss_pred ccchhHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHH
Confidence 1 233455788999999999999999999999999999998887 8888888888774
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.95 E-value=8.7e-27 Score=232.10 Aligned_cols=252 Identities=18% Similarity=0.155 Sum_probs=202.4
Q ss_pred HHhHhHHHhcccceeEEEecCCCCC-----CCcCCCc--e-EEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeCCC---
Q 041985 148 KQKYLPSMAQLKTIASWALTEPDYG-----SDASALR--T-TATKVEGGWILEGQKRWVGNSTFADLLVILARNTTT--- 216 (415)
Q Consensus 148 k~~~l~~l~~g~~~~~~a~tE~~~g-----sd~~~~~--t-~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~--- 216 (415)
-++|+..+.+.++..+.+++.|... +...... + ..+++++||+|||.|.|+|++ .||+++|+++++..
T Consensus 129 ~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~~ 207 (477)
T TIGR02309 129 VRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAGA 207 (477)
T ss_pred HHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCcc
Confidence 4689999999999999999999631 1111222 2 335578999999999999996 99999999997532
Q ss_pred -CC--eeEEEEeCCCCCeeeeecCCccccccc-----------CcccEEecceeeCCCCC--cCCC----CChHHHHHHH
Q 041985 217 -KQ--INAFIVKKHAPGLTATKIENKIGLRIV-----------QNGDVLLKNVFVPDEDR--VPGF----KSFQDTITTL 276 (415)
Q Consensus 217 -~~--~~~flV~~~~pGv~v~~~~~~~G~r~~-----------~~~~v~f~~v~Vp~~~v--lg~~----~~~~~~~~~~ 276 (415)
++ .++|+||.|+||+++....++.|.++. .++.|.||||+||+++| +|.. .++...
T Consensus 208 ~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~---- 283 (477)
T TIGR02309 208 EKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAAT---- 283 (477)
T ss_pred CCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHH----
Confidence 23 688999999999999999999998876 67999999999999999 6653 122121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----Cchh
Q 041985 277 SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK-----MTAG 351 (415)
Q Consensus 277 ~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~-----~~~~ 351 (415)
..+++.++.++|.+..++|.++.|+++ .+|+.++.++|.||++|+||.+.++++|+++++++...+.+. +...
T Consensus 284 -~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~~ 361 (477)
T TIGR02309 284 -GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDRG 361 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCHH
Confidence 123667889999999999999999999 899999999999999999999999999999999999888743 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCc-c--hHHHHHHHHHHHHHhCCCCCCccc
Q 041985 352 HASLAKGWITSRARETVALGRELLGGNGISTD-F--HVAKINSLLTGREITGFASFKPAV 408 (415)
Q Consensus 352 ~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~-~--~~~r~~~~~i~~~~~g~~~~~~~~ 408 (415)
.++++|.++++...++. .++|++||.|++.- + .+.-=.+..+-|++.|.. +.+++
T Consensus 362 ~as~aKl~~~e~~~rv~-~alq~lGG~G~~~~Ps~~df~~e~~~~l~kyl~~~~-~~a~e 419 (477)
T TIGR02309 362 ALDAARNLYPRLYPRLR-EILEQLGASGLITLPSEKDFKGPLGPFLEKFLQGAN-LEAKE 419 (477)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhCCcEEecCChHHhChhhHHHHHHHhCCCC-CCHHH
Confidence 78999999999999995 99999999999641 1 122233445667776655 55543
No 43
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.92 E-value=3e-24 Score=210.38 Aligned_cols=276 Identities=23% Similarity=0.297 Sum_probs=225.3
Q ss_pred hhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCC--EEEEe-----eeeee
Q 041985 125 SSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEG--GWILE-----GQKRW 197 (415)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~--g~~ln-----G~K~~ 197 (415)
+..+..|.++....|.--|++||.++||.+..+.++++|.|-||-++|+++.+.+|+|+.+.. .|+|| ..|||
T Consensus 108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWW 187 (670)
T KOG0136|consen 108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWW 187 (670)
T ss_pred CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceeccc
Confidence 444567888899999999999999999999999999999999999999999999999999875 49987 99999
Q ss_pred ccC-CCCCCEEEEEEEeC---CCCCeeEEEEeCC-------CCCeeeeecCCcccccccCcccEEecceeeCCCCCcCC-
Q 041985 198 VGN-STFADLLVILARNT---TTKQINAFIVKKH-------APGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPG- 265 (415)
Q Consensus 198 vs~-~~~ad~~lv~a~~~---~~~~~~~flV~~~-------~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~- 265 (415)
..+ +..|++.+|.|++- ...|+..|+||.. .|||+++++..++|..+.+++-+.||||+||.+++|.+
T Consensus 188 PGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~ 267 (670)
T KOG0136|consen 188 PGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRH 267 (670)
T ss_pred CCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhh
Confidence 998 57789999999973 2367899999965 68999999999999999999999999999999999854
Q ss_pred ----CCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-------CCcchhhHHHHHHHHHHH
Q 041985 266 ----FKSF-------QDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFG-------APSATFQITQQKLAQMLG 327 (415)
Q Consensus 266 ----~~~~-------~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg-------~~l~~~~~iq~~la~~~~ 327 (415)
++|. ......+-..|..+..-..-....|..+|++|+..|+|+. ..|.|||..|.+|--..+
T Consensus 268 ~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA 347 (670)
T KOG0136|consen 268 AKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLA 347 (670)
T ss_pred heecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHH
Confidence 2331 0111112233655555566667778899999999999973 358999999999999888
Q ss_pred HHHHHHHHHHHHHHHH-------HcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-------
Q 041985 328 NIQAMILAGWRVCNLY-------EDGK-----MTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK------- 388 (415)
Q Consensus 328 ~~~a~~~~~~~aa~~~-------~~~~-----~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r------- 388 (415)
...+-+.......+.+ ++++ +.+...+.+|.+++..+-+-+++|.+.|||+||+..+.+..
T Consensus 348 ~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~ 427 (670)
T KOG0136|consen 348 RAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVG 427 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeee
Confidence 8777665544444433 3332 23445788999999999999999999999999999888777
Q ss_pred ---------HHHHHHHHHHhC
Q 041985 389 ---------INSLLTGREITG 400 (415)
Q Consensus 389 ---------~~~~~i~~~~~g 400 (415)
|+..+++|+++.
T Consensus 428 ~CTYEGEN~VmlLQ~ARfLmK 448 (670)
T KOG0136|consen 428 ACTYEGENTVLLLQVARFLVK 448 (670)
T ss_pred eeeeeccceeehHHHHHHHHH
Confidence 888888887764
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.83 E-value=3.6e-19 Score=151.77 Aligned_cols=133 Identities=27% Similarity=0.420 Sum_probs=127.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 041985 267 KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG 346 (415)
Q Consensus 267 ~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~ 346 (415)
+|+......+..+|+.+++.++|.++.+++.+.+|+++|.+||+++.++|.++++|+++.++++++++++++++..++.+
T Consensus 2 ~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~ 81 (150)
T PF00441_consen 2 QGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAG 81 (150)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhccccccccccccc
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHh
Q 041985 347 KMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREIT 399 (415)
Q Consensus 347 ~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~ 399 (415)
.......+++|+++++.+.++++.+++++|+.||..++|++| ++++.|+|.+|
T Consensus 82 ~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 82 QNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred cccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 888888999999999999999999999999999999999999 78888887764
No 45
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.76 E-value=3.2e-18 Score=138.73 Aligned_cols=112 Identities=42% Similarity=0.584 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhh
Q 041985 48 TSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSS 126 (415)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~ 126 (415)
|++++++++.+++|+++++.|...++|+++.+|+++|+++.+.||+++.+ ++|||.|.+..+.+.+++++++.|.++++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~ 80 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence 68999999999999999999999999888899999999999999999977 99999999999999999999999999998
Q ss_pred HHHHhhhhHHHHHHccCCHHHHHhHhHHHhccc
Q 041985 127 FILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLK 159 (415)
Q Consensus 127 ~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~ 159 (415)
.+.+|+.++..+|..+|+++||++|||++.+|+
T Consensus 81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 888887777789999999999999999999986
No 46
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=2.1e-13 Score=131.18 Aligned_cols=255 Identities=15% Similarity=0.149 Sum_probs=178.0
Q ss_pred HHHhHhHHHhcccceeEEEecCCCCC-----CCcC--CCceEE-EEeCCEEEEeeeeeeccCCCCCCEEEEE-EEe--CC
Q 041985 147 QKQKYLPSMAQLKTIASWALTEPDYG-----SDAS--ALRTTA-TKVEGGWILEGQKRWVGNSTFADLLVIL-ARN--TT 215 (415)
Q Consensus 147 qk~~~l~~l~~g~~~~~~a~tE~~~g-----sd~~--~~~t~a-~~~~~g~~lnG~K~~vs~~~~ad~~lv~-a~~--~~ 215 (415)
--.+|+..+...++..+.++|.|... +... .+-... +.+++|.+|+|.|..+|+++.+|.++|+ .+. ++
T Consensus 132 n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~ 211 (493)
T COG2368 132 NAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQED 211 (493)
T ss_pred HHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCCC
Confidence 34679999999999999999998631 1112 133333 4578999999999999999999999998 332 22
Q ss_pred CCC-eeEEEEeCCCCCeeeeecCCc-ccc--ccc------------CcccEEecceeeCCCCCcCCCC-----ChHHHHH
Q 041985 216 TKQ-INAFIVKKHAPGLTATKIENK-IGL--RIV------------QNGDVLLKNVFVPDEDRVPGFK-----SFQDTIT 274 (415)
Q Consensus 216 ~~~-~~~flV~~~~pGv~v~~~~~~-~G~--r~~------------~~~~v~f~~v~Vp~~~vlg~~~-----~~~~~~~ 274 (415)
+.. -.+|.+|.|+|||++...... .+- .+. ..+-|+||||+||+++|+--.+ .+.....
T Consensus 212 d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~~ 291 (493)
T COG2368 212 DKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYAWYAVSG 291 (493)
T ss_pred CCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHHHHHHHHH
Confidence 233 457999999999998655422 111 111 1244999999999999984432 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----Cc
Q 041985 275 TLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK-----MT 349 (415)
Q Consensus 275 ~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~-----~~ 349 (415)
+....|...+.+..+-..-.+-.+..-++. -.+.++++||++|+||.+..+.++++...++....... +.
T Consensus 292 Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~Pn 366 (493)
T COG2368 292 FARLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLPN 366 (493)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCceecC
Confidence 333445555555445444444444443333 23588999999999999999999999998888665532 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-----HHHHHHHHHHhCCCCCCccc
Q 041985 350 AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-----INSLLTGREITGFASFKPAV 408 (415)
Q Consensus 350 ~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-----~~~~~i~~~~~g~~~~~~~~ 408 (415)
...+...|.++++.-.++.+.+.++.||.-.+-.+ ++ =.+..|.|++-|...+.+++
T Consensus 367 ~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lPS--~~D~~n~e~~~~l~kYlrg~~~~~aee 428 (493)
T COG2368 367 PAYANVGRVYAPKAYPRIKEILQDISGGGIITLPS--AEDLFNPEIRPYLDKYLRGSANVDAEE 428 (493)
T ss_pred HHHHhhHHHhcccchHHHHHHHHHHhcCceeecCc--hhhhcCchhhHHHHHHHhccCCCCHHH
Confidence 67789999999999999999999999887665544 22 55677778888766655543
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.58 E-value=4.2e-15 Score=102.10 Aligned_cols=52 Identities=44% Similarity=0.723 Sum_probs=47.3
Q ss_pred EEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeC
Q 041985 163 SWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT 214 (415)
Q Consensus 163 ~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~ 214 (415)
|+|+|||++|+|+..++|+|+++++||+|||+|.||++++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999984
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.57 E-value=4.2e-13 Score=133.75 Aligned_cols=256 Identities=9% Similarity=0.017 Sum_probs=165.9
Q ss_pred HHHhHhHHHhcccceeEEEecCCCCC-C----CcCCCceE-EEEeCCEEEEeeeeeeccCCCCCCEEEE-EEEe---CCC
Q 041985 147 QKQKYLPSMAQLKTIASWALTEPDYG-S----DASALRTT-ATKVEGGWILEGQKRWVGNSTFADLLVI-LARN---TTT 216 (415)
Q Consensus 147 qk~~~l~~l~~g~~~~~~a~tE~~~g-s----d~~~~~t~-a~~~~~g~~lnG~K~~vs~~~~ad~~lv-~a~~---~~~ 216 (415)
--.+|+..+.+.++..+.+++.|... | ....+-.. .+++++|.+|+|.|...|+++.+|.++| .... +++
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d 216 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDN 216 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCC
Confidence 34679999999999999999998631 1 11122233 3457899999999999999999999998 4443 123
Q ss_pred CCe-eEEEEeCCCCCeeeeecCCcc----ccc-cc----------CcccEEecceeeCCCCCcCCCCC-----hHHHHHH
Q 041985 217 KQI-NAFIVKKHAPGLTATKIENKI----GLR-IV----------QNGDVLLKNVFVPDEDRVPGFKS-----FQDTITT 275 (415)
Q Consensus 217 ~~~-~~flV~~~~pGv~v~~~~~~~----G~r-~~----------~~~~v~f~~v~Vp~~~vlg~~~~-----~~~~~~~ 275 (415)
+.. ..|.||.|+|||++......- +.. .. ..+-++||||+||+|+|+--++. +.....+
T Consensus 217 ~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~~ 296 (519)
T TIGR02310 217 DDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGGF 296 (519)
T ss_pred CCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhhH
Confidence 333 469999999999998665332 000 11 13678999999999999854331 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCch
Q 041985 276 LSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG-----KMTA 350 (415)
Q Consensus 276 ~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~-----~~~~ 350 (415)
..+.-...+...++-++-.+-.+..-+.. ..+.++++||++|+||....|.+++++..+....... .+..
T Consensus 297 ~~~~~~q~~~r~~~k~dfl~G~a~~~ae~-----~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P~~ 371 (519)
T TIGR02310 297 ARLFPMQACTRLAVKLDFITGLLHKALQC-----TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLPSA 371 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeeCH
Confidence 11111111112333333333333332222 3457899999999999999999999998887755432 2455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-----HHHHHHHHHHhCCCCCCccc
Q 041985 351 GHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-----INSLLTGREITGFASFKPAV 408 (415)
Q Consensus 351 ~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-----~~~~~i~~~~~g~~~~~~~~ 408 (415)
.....+|.+.++...++.+.+.++.||. ++--.+-++ =.+..+-|++.|.+.+.+++
T Consensus 372 ~~~~a~r~~~~~~y~r~~eil~~~~agG-li~~pss~~Df~npe~~~~l~kyl~g~~~~~aee 433 (519)
T TIGR02310 372 QALQTYRVMAPMAYHTIKKIIEQTVTSG-LIYLPSHIRDLNNPQIDQYLEKYVRGSNGMEHRE 433 (519)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHccCC-eeecCCcHHHccCchhHHHHHHHhcCCCCCCHHH
Confidence 6678999999999999999887665543 322222222 34556677777766665554
No 49
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.50 E-value=5.5e-13 Score=111.43 Aligned_cols=115 Identities=25% Similarity=0.221 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCc----h
Q 041985 281 LMVAWQSIGIAMGVYDMCHRYLMERKQ--FGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE----DGKMT----A 350 (415)
Q Consensus 281 ~~~~a~~~G~a~~al~~a~~~a~~R~~--fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~----~~~~~----~ 350 (415)
+.+++.++|+++++++++.++++.|.. .+.++.+.|.+|.+|+++.+.+++++++++.+++.++ .+... .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 467899999999999999999999987 6899999999999999999999999999999999954 44332 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHHHH
Q 041985 351 GHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTG 395 (415)
Q Consensus 351 ~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~i~ 395 (415)
....+.|.++.+.+.++++.+++++||.++...+|++|++||+-+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~ 125 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRA 125 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999843
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.88 E-value=7.1e-09 Score=95.02 Aligned_cols=117 Identities=20% Similarity=0.311 Sum_probs=78.1
Q ss_pred HHHhHhHHHhcccceeEEEecCCCC--CCCc----CCCceEE-EEeCCEEEEeeeeeeccCCCCCCEEEEEEEeC---CC
Q 041985 147 QKQKYLPSMAQLKTIASWALTEPDY--GSDA----SALRTTA-TKVEGGWILEGQKRWVGNSTFADLLVILARNT---TT 216 (415)
Q Consensus 147 qk~~~l~~l~~g~~~~~~a~tE~~~--gsd~----~~~~t~a-~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~---~~ 216 (415)
--++|+..+.++++..+.+++.|.. +... ..+-... +++++|.+|+|.|...|+++.+|.++|+-... ++
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d 203 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGD 203 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCC
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCC
Confidence 3457889999999999999999973 2111 1133444 45789999999999999999999999985542 12
Q ss_pred -CCeeEEEEeCCCCCeeeeecCCcccccc--cC----------cccEEecceeeCCCCCc
Q 041985 217 -KQINAFIVKKHAPGLTATKIENKIGLRI--VQ----------NGDVLLKNVFVPDEDRV 263 (415)
Q Consensus 217 -~~~~~flV~~~~pGv~v~~~~~~~G~r~--~~----------~~~v~f~~v~Vp~~~vl 263 (415)
+--.+|.||.++||+++.........+. .+ .+-|.||||+||+++|+
T Consensus 204 ~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 204 EDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp GGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 2346799999999999987765544441 11 26799999999999875
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=96.86 E-value=0.036 Score=49.49 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=71.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcch
Q 041985 311 PSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG-----KMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFH 385 (415)
Q Consensus 311 ~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~-----~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~ 385 (415)
.+.++++||++|+|+....|.+++++..+....... .|.......+|.+.++...++++.+.+++||.=.+-.+.
T Consensus 43 G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~Ps~ 122 (205)
T PF03241_consen 43 GIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITLPSE 122 (205)
T ss_dssp TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC---H
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCH
Confidence 457899999999999999999999999777755442 255667899999999999999999999999886664333
Q ss_pred HHH---HHHHHHHHHHhCCCCCCccc
Q 041985 386 VAK---INSLLTGREITGFASFKPAV 408 (415)
Q Consensus 386 ~~r---~~~~~i~~~~~g~~~~~~~~ 408 (415)
.+- -.+..+-|++-|.+.+.+++
T Consensus 123 ~Df~npe~~~~l~kYl~g~~~~~aee 148 (205)
T PF03241_consen 123 ADFDNPEIGPYLDKYLQGANGVSAEE 148 (205)
T ss_dssp HHHH-TTTHHHHHHHT-BTTTC-HHH
T ss_pred HHhCCcchhHHHHHHhcccCCCCHHH
Confidence 332 34566777777776655544
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=93.01 E-value=2.7 Score=43.10 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=66.9
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchH
Q 041985 308 FGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMT-AGHASLAKGWITSRARETVALGRELLGGNGISTDFHV 386 (415)
Q Consensus 308 fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~-~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~ 386 (415)
+|+.|.+.|.+..||+++.+.+++|.+.+-++.+.+..+.+. ..+..+++.||.+...++-..+-+++.. ++..+..+
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~ 507 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSY 507 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHH
Confidence 578999999999999999999999999999999888887544 3346799999999999999888899987 66664444
Q ss_pred HH
Q 041985 387 AK 388 (415)
Q Consensus 387 ~r 388 (415)
.+
T Consensus 508 ~~ 509 (520)
T PTZ00457 508 KR 509 (520)
T ss_pred HH
Confidence 33
No 53
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=90.63 E-value=7.3 Score=39.77 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=74.1
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCC-cch
Q 041985 308 FGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKM-TAGHASLAKGWITSRARETVALGRELLGGNGIST-DFH 385 (415)
Q Consensus 308 fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~-~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~-~~~ 385 (415)
+|+.|.+.|.+-++||+..+.+++|.+.+.+|.+.+..+.+ ...+.+.++.+|++...++...+-++.++ ++.. +..
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~-~~~~~d~~ 611 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG-HVVNLDRN 611 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhhcHH
Confidence 68999999999999999999999999999999999988844 45568999999999999999999888877 4433 333
Q ss_pred HHHHHHHHHHHHHhCCCCCCccc
Q 041985 386 VAKINSLLTGREITGFASFKPAV 408 (415)
Q Consensus 386 ~~r~~~~~i~~~~~g~~~~~~~~ 408 (415)
+.+ ++|.++..-.+..++
T Consensus 612 i~~-----~sk~v~e~gg~~~~~ 629 (634)
T KOG0137|consen 612 IVS-----LSKTVLEKGGYITEH 629 (634)
T ss_pred HHH-----HHHHHHhcCCeEEec
Confidence 332 345555554444333
No 54
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=88.61 E-value=0.5 Score=38.50 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=28.2
Q ss_pred HHHhhhhHHHHHHccCCHHHHHhHhHHHhcccc
Q 041985 128 ILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKT 160 (415)
Q Consensus 128 ~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~ 160 (415)
+.+|.++....|...||++|+++|+|+..+.++
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 347888999999999999999999999987765
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=47.75 E-value=2.1e+02 Score=31.24 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=59.1
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHH
Q 041985 308 FGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVA 387 (415)
Q Consensus 308 fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~ 387 (415)
.|..|...|.+..||+++.+.++++-+.+.++. +++.+... ..+++.++.+...++-+..-++...- .+-++.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~n~---p~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPEAD-LPLVHWAVQDALYQAEQALDGLLRNF---PNRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHcC---CchHHH
Confidence 578889999999999999999999999887766 34444333 56777777776666555444544322 122333
Q ss_pred HHHHHHHHHHHhCCCCCCccccc
Q 041985 388 KINSLLTGREITGFASFKPAVLT 410 (415)
Q Consensus 388 r~~~~~i~~~~~g~~~~~~~~~~ 410 (415)
.++|.+ -.-+|.+--+|+|-+
T Consensus 632 ~~~~~~--~~p~g~~~~~p~d~~ 652 (777)
T PRK09463 632 GLLRVL--VFPLGRRYRAPSDKL 652 (777)
T ss_pred HHHHHe--eeCCCCCCCCCCHHH
Confidence 444444 223444444555543
No 56
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=28.38 E-value=1.5e+02 Score=24.77 Aligned_cols=47 Identities=13% Similarity=0.282 Sum_probs=27.5
Q ss_pred EEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeCCCCCeeEEEEeCC-----CCCeeeeecC
Q 041985 181 TATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKH-----APGLTATKIE 237 (415)
Q Consensus 181 ~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~~~~~~flV~~~-----~pGv~v~~~~ 237 (415)
....+.+-|.|+|+|+..-.. ..+....+.+.++|.. .|.|++....
T Consensus 63 ei~a~~~~WlV~Grrrg~f~~----------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 63 EIVADSDNWLVSGRRRGVFSL----------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred EEecCCCcEEEeccCcceEEe----------cCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 444566779999999744211 1111123456677754 6778877655
No 57
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=27.44 E-value=2.1e+02 Score=20.21 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHhh-ccccHHHHHHhCCCC-----HHHHHHHHHcCCCCC
Q 041985 46 LLTSEEQAIRKKVRECAEKE-LAPIVAEYWEKAEFP-----FQVIPKLGALNIAAG 95 (415)
Q Consensus 46 ~l~~~~~~l~~~~~~~~~~~-l~p~~~~~~~~~~~~-----~~~~~~l~~~Gl~~~ 95 (415)
.|++.|+++.+-+.+|..++ .+|-..|+-+.-++. ...++.|.+.|++.-
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccC
Confidence 37899999999999998764 467777776654543 346777888888754
No 58
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=24.50 E-value=62 Score=30.34 Aligned_cols=14 Identities=36% Similarity=0.632 Sum_probs=12.0
Q ss_pred CEEEEeeeeeeccC
Q 041985 187 GGWILEGQKRWVGN 200 (415)
Q Consensus 187 ~g~~lnG~K~~vs~ 200 (415)
|||+|||+|...+.
T Consensus 114 DGW~LnGe~FPs~~ 127 (311)
T PF05428_consen 114 DGWELNGEKFPSSQ 127 (311)
T ss_pred eceEECccCCcCcc
Confidence 79999999987764
Done!