Query 041985
Match_columns 415
No_of_seqs 165 out of 1595
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix5_A Acyl-coenzyme A oxidase 100.0 5.1E-70 1.8E-74 543.1 44.4 397 10-408 20-432 (436)
2 3sf6_A Glutaryl-COA dehydrogen 100.0 2.9E-68 1E-72 526.6 42.7 373 30-405 14-403 (403)
3 3swo_A Glutaryl-COA dehydrogen 100.0 8.8E-68 3E-72 522.7 41.6 366 37-405 17-398 (399)
4 3ii9_A Glutaryl-COA dehydrogen 100.0 5.1E-68 1.7E-72 523.9 37.0 366 38-404 11-395 (396)
5 3p4t_A Putative acyl-COA dehyd 100.0 7.6E-67 2.6E-71 516.5 41.7 366 36-403 16-403 (403)
6 2eba_A Putative glutaryl-COA d 100.0 1.9E-66 6.4E-71 511.0 42.4 362 42-404 6-385 (385)
7 2d29_A Acyl-COA dehydrogenase; 100.0 4.9E-66 1.7E-70 508.3 42.0 359 42-400 2-385 (387)
8 1ukw_A Acyl-COA dehydrogenase; 100.0 7.1E-66 2.4E-70 505.8 42.0 357 43-400 1-378 (379)
9 3pfd_A Acyl-COA dehydrogenase; 100.0 2.6E-66 9E-71 511.2 37.8 358 42-400 14-393 (393)
10 2jif_A Short/branched chain sp 100.0 1E-65 3.6E-70 508.2 41.7 369 30-400 13-402 (404)
11 1buc_A Butyryl-COA dehydrogena 100.0 1.1E-65 3.6E-70 505.3 40.7 358 43-400 1-383 (383)
12 3r7k_A Probable acyl COA dehyd 100.0 9.6E-66 3.3E-70 508.6 39.5 357 42-398 24-401 (403)
13 2dvl_A Acyl-COA dehydrogenase; 100.0 1.5E-65 5.2E-70 502.2 40.5 353 46-400 2-372 (372)
14 1egd_A Medium chain acyl-COA d 100.0 1.8E-65 6.1E-70 505.7 40.3 359 42-401 11-393 (396)
15 2vig_A Short-chain specific ac 100.0 2.4E-65 8.2E-70 504.0 41.0 359 43-401 2-381 (391)
16 1siq_A GCD, glutaryl-COA dehyd 100.0 2.8E-65 9.6E-70 503.8 40.9 364 42-406 9-390 (392)
17 3nf4_A Acyl-COA dehydrogenase; 100.0 2.7E-65 9.3E-70 503.1 40.5 345 43-388 12-359 (387)
18 2pg0_A Acyl-COA dehydrogenase; 100.0 1.4E-64 4.7E-69 497.6 42.8 344 43-388 5-357 (385)
19 1rx0_A Acyl-COA dehydrogenase 100.0 1.1E-64 3.9E-69 499.3 41.6 358 42-400 14-392 (393)
20 1ivh_A Isovaleryl-COA dehydrog 100.0 6.5E-65 2.2E-69 501.4 39.6 356 45-400 11-391 (394)
21 3mpi_A Glutaryl-COA dehydrogen 100.0 9.5E-65 3.2E-69 500.9 37.2 359 43-404 1-387 (397)
22 1r2j_A Protein FKBI; polyketid 100.0 2E-64 6.7E-69 493.2 37.1 345 56-403 2-366 (366)
23 4hr3_A Putative acyl-COA dehyd 100.0 3.7E-64 1.3E-68 499.4 34.6 360 42-401 4-411 (415)
24 3owa_A Acyl-COA dehydrogenase; 100.0 4.6E-63 1.6E-67 508.7 37.3 356 44-401 30-425 (597)
25 2z1q_A Acyl-COA dehydrogenase; 100.0 4.9E-62 1.7E-66 501.2 36.8 353 47-401 28-415 (577)
26 3mkh_A Nitroalkane oxidase; ox 100.0 2.5E-61 8.6E-66 482.3 35.3 358 42-401 2-417 (438)
27 2c12_A Nitroalkane oxidase; ox 100.0 1.7E-60 5.7E-65 476.4 38.4 362 43-406 2-424 (439)
28 2wbi_A Acyl-COA dehydrogenase 100.0 9.3E-61 3.2E-65 476.4 33.4 358 42-401 18-419 (428)
29 2uxw_A VERY-long-chain specifi 100.0 3E-60 1E-64 489.1 37.4 341 46-388 45-402 (607)
30 3mxl_A Nitrososynthase; flavin 100.0 1.5E-57 5E-62 449.4 29.5 350 42-402 4-395 (395)
31 2or0_A Hydroxylase; APC7385, r 100.0 8.9E-57 3E-61 446.2 29.9 344 43-403 14-404 (414)
32 3m9v_A FAD-dependent oxidoredu 100.0 2.4E-56 8.2E-61 446.4 33.2 352 42-404 15-408 (439)
33 2rfq_A 3-HSA hydroxylase, oxyg 100.0 1.9E-55 6.4E-60 434.1 33.5 336 52-404 10-390 (394)
34 2jbr_A P-hydroxyphenylacetate 100.0 5.9E-55 2E-59 434.1 31.4 336 52-404 38-418 (422)
35 1w07_A Acyl-COA oxidase; oxido 100.0 2.2E-50 7.5E-55 419.7 29.1 346 47-401 26-441 (659)
36 3djl_A Protein AIDB; alpha hel 100.0 1.9E-48 6.6E-53 395.4 33.1 311 81-403 89-444 (541)
37 2ddh_A Acyl-COA oxidase; beta 100.0 4.4E-47 1.5E-51 394.3 32.1 340 48-401 26-438 (661)
38 1u8v_A Gamma-aminobutyrate met 100.0 8E-39 2.7E-43 321.1 22.7 248 138-393 119-404 (490)
39 2yyk_A 4-hydroxyphenylacetate- 100.0 4.9E-38 1.7E-42 315.0 24.6 235 145-388 123-391 (481)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 2.8E-34 9.6E-39 287.5 24.2 253 142-401 127-413 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 100.0 2.6E-28 8.7E-33 244.8 23.4 249 146-401 134-414 (517)
42 3owa_A Acyl-COA dehydrogenase; 92.3 1 3.5E-05 45.8 12.1 68 308-375 482-551 (597)
43 2uxw_A VERY-long-chain specifi 88.6 3.2 0.00011 42.2 11.8 70 308-377 506-576 (607)
44 2z1q_A Acyl-COA dehydrogenase; 38.3 3.1E+02 0.01 27.2 12.4 63 308-376 468-530 (577)
No 1
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=5.1e-70 Score=543.11 Aligned_cols=397 Identities=75% Similarity=1.230 Sum_probs=365.0
Q ss_pred cCCCCCCCccCCCCCCCCCcCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHH
Q 041985 10 YSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGA 89 (415)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~ 89 (415)
+++.+.......++..++. ..+|+...|++ .|++.++++++++++.+++|+++++.|...++++.+.+|+++|++|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e 97 (436)
T 2ix5_A 20 YFDLPPMEMSVAFPQATPA-STFPPCTSDYY-HFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGA 97 (436)
T ss_dssp SSSSCCCCHHHHCCSSCCT-TSCCCCCSCTT-CGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHT
T ss_pred hcCCChhhhhhhccccCCC-CCCCCcccchh-hcCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHH
Confidence 3444444433334444443 77788888888 888899999999999999999999999888888888999999999999
Q ss_pred cCCCCCcccccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCC
Q 041985 90 LNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEP 169 (415)
Q Consensus 90 ~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~ 169 (415)
.||+++.+++|||.|++..+.+.++|++++.|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||
T Consensus 98 ~Gl~~l~~pe~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp 177 (436)
T 2ix5_A 98 MGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177 (436)
T ss_dssp TTCTTTTCCSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBT
T ss_pred cCCCcCcCCCCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCC
Confidence 99999966699999999999999999999999988877777766777888999999999999999999999999999999
Q ss_pred CCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCccc
Q 041985 170 DYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGD 249 (415)
Q Consensus 170 ~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~ 249 (415)
+.|||+..+.|+|++++|||+|||+|.||||+..||+++|+|++++++++++|+||++.|||++.+.|+++|++++++++
T Consensus 178 ~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~ 257 (436)
T 2ix5_A 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGD 257 (436)
T ss_dssp TBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTEEEEECCCBSSSTTSCEEE
T ss_pred CCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCeEeeccccccCCCcCCcee
Confidence 99999999999999999999999999999999999999999999754678999999999999999999999999999999
Q ss_pred EEecceeeCCCCCcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHH
Q 041985 250 VLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNI 329 (415)
Q Consensus 250 v~f~~v~Vp~~~vlg~~~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~ 329 (415)
|.||||+||++++|+..+++......++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++
T Consensus 258 v~fddv~VP~~~~lg~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~ 337 (436)
T 2ix5_A 258 ILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNV 337 (436)
T ss_dssp EEEEEEEEEGGGBCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHH
T ss_pred EEeccEEECHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHH
Confidence 99999999999999887888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHH
Q 041985 330 QAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLL 393 (415)
Q Consensus 330 ~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~ 393 (415)
+++|++++++++.++.+.+....++++|.++++.+.++++.++|+|||.||+.++|++| +++.+
T Consensus 338 ~aar~l~~~aa~~~d~g~~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~ 417 (436)
T 2ix5_A 338 QAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLV 417 (436)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHH
Confidence 99999999999999988776777899999999999999999999999999999999999 89999
Q ss_pred HHHHHhCCCCCCccc
Q 041985 394 TGREITGFASFKPAV 408 (415)
Q Consensus 394 i~~~~~g~~~~~~~~ 408 (415)
|+|.++|+|+|+|.+
T Consensus 418 iar~llgl~~~~~~~ 432 (436)
T 2ix5_A 418 TGREVTGIASFKPAT 432 (436)
T ss_dssp HHHHHHSCCCCSCC-
T ss_pred HHHHHhCCccccchh
Confidence 999999999998765
No 2
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.9e-68 Score=526.64 Aligned_cols=373 Identities=33% Similarity=0.572 Sum_probs=353.1
Q ss_pred CCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-HHHHHHHHHcCCCCCcccccCCCCCCHH
Q 041985 30 SKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFP-FQVIPKLGALNIAAGTIKGYGCPGLCIT 108 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~~~~GG~g~~~~ 108 (415)
++.+....|+. .|++.++++++++++.+++|+++++.|...+.++++.+| +++|++|++.||+++.+++|||.|+++.
T Consensus 14 ~~~~~~~~~~~-~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~ 92 (403)
T 3sf6_A 14 RSQRRGADDLI-GINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAV 92 (403)
T ss_dssp ---CCCHHHHH-TCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTSCSTTCCCCCHH
T ss_pred hhhcCCCcchh-ccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccchhhCCCCCCHH
Confidence 34445556777 899999999999999999999999999999999999999 9999999999999994499999999999
Q ss_pred HHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCE
Q 041985 109 GAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGG 188 (415)
Q Consensus 109 ~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g 188 (415)
+.+.++|++++.|+++++.+.+|..++...|..+|+++||++|||++.+|++++|+++|||++|||+..+.|+|++++||
T Consensus 93 ~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g 172 (403)
T 3sf6_A 93 AYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDD 172 (403)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTE
T ss_pred HHHHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCE
Confidence 99999999999999988887777767778899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeeccCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCCCC
Q 041985 189 WILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKS 268 (415)
Q Consensus 189 ~~lnG~K~~vs~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~~ 268 (415)
|+|||+|.||||+..||+++|+|+++ +++++|+||++.|||++.+.|+++|+|++++++|.||||+||++++||..++
T Consensus 173 ~~lnG~K~~is~a~~Ad~~~v~ar~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g 250 (403)
T 3sf6_A 173 WILTGTKMWITNGSVADVAVVWARTD--EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATS 250 (403)
T ss_dssp EEEEEEEEEEETGGGCSEEEEEEEET--TEEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTTCCS
T ss_pred EEEEEEEEeecCCcccCEEEEEEEeC--CceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCCChh
Confidence 99999999999999999999999997 5699999999999999999999999999999999999999999999998778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 041985 269 FQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKM 348 (415)
Q Consensus 269 ~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~ 348 (415)
+......++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+
T Consensus 251 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~ 330 (403)
T 3sf6_A 251 LGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGEL 330 (403)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCCCC
Q 041985 349 TAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFK 405 (415)
Q Consensus 349 ~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~~~ 405 (415)
....++++|.++++.+.++++.++|+|||.||+.++|++| +++++|+|.++|+|+|+
T Consensus 331 ~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llgl~~~~ 403 (403)
T 3sf6_A 331 APEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGVGAFR 403 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSCCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHHHhCccccC
Confidence 8888999999999999999999999999999999999999 99999999999999874
No 3
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=8.8e-68 Score=522.69 Aligned_cols=366 Identities=30% Similarity=0.536 Sum_probs=349.8
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHH
Q 041985 37 SDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAE 116 (415)
Q Consensus 37 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~ 116 (415)
.|+. .|++.++++++++++.+++|+++++.|...+.++++.+|+++|++|++.||+++.+++|||.|+++.+.+.++|+
T Consensus 17 ~~~~-~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~ee 95 (399)
T 3swo_A 17 LELF-DTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACME 95 (399)
T ss_dssp HHHH-TGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTSCSTTCCCCCHHHHHHHHHH
T ss_pred cccc-cCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCChhhhCCCCCCHHHHHHHHHH
Confidence 3666 788999999999999999999999999998999999999999999999999999449999999999999999999
Q ss_pred HHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeee
Q 041985 117 IARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKR 196 (415)
Q Consensus 117 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~ 196 (415)
+++.|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 175 (399)
T 3swo_A 96 LEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKM 175 (399)
T ss_dssp HHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEE
T ss_pred HHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEE
Confidence 99999998887777766778889999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCCCChHHHHHHH
Q 041985 197 WVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTL 276 (415)
Q Consensus 197 ~vs~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~~~~~~~~~~ 276 (415)
|+||+..||+++|+|+++ +++++|+||++.|||++.+.|+++|+|++++++|.||||+||++++||.++++......+
T Consensus 176 ~vs~a~~Ad~~~v~a~~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~l 253 (399)
T 3swo_A 176 WITNGNLADVATVWAQTD--DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSCL 253 (399)
T ss_dssp EEETTTTCSEEEEEEBCT--TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTTCCSTHHHHHHH
T ss_pred eECCCCccCEEEEEEEeC--CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCCChhHHHHHHHH
Confidence 999999999999999986 569999999999999999999999999999999999999999999999877888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHH
Q 041985 277 SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLA 356 (415)
Q Consensus 277 ~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~ 356 (415)
..+|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++++
T Consensus 254 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~a 333 (399)
T 3swo_A 254 NEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLG 333 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988788889999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCCCC
Q 041985 357 KGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFK 405 (415)
Q Consensus 357 K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~~~ 405 (415)
|.++++.+.++++.++|+|||.||+.++|++| +++.+|++.++|+|+|.
T Consensus 334 K~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg~p~~~ 398 (399)
T 3swo_A 334 KLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGKAAFR 398 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999999 99999999999999874
No 4
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=5.1e-68 Score=523.89 Aligned_cols=366 Identities=35% Similarity=0.602 Sum_probs=341.9
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHH
Q 041985 38 DYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAE 116 (415)
Q Consensus 38 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~ 116 (415)
|+. .|++.++++|+++++.+++|+++++.|...+.++++.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|+
T Consensus 11 ~~~-~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ee 89 (396)
T 3ii9_A 11 DPL-LLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIARE 89 (396)
T ss_dssp STT-CGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred ccc-ccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence 445 78888999999999999999999999999999999999999999999999999977 9999999999999999999
Q ss_pred HHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeee
Q 041985 117 IARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKR 196 (415)
Q Consensus 117 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~ 196 (415)
+++.|+++++.+.+|+.++..+|..+|+++||++|||++.+|++++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 169 (396)
T 3ii9_A 90 VERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM 169 (396)
T ss_dssp HHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEE
T ss_pred HHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEE
Confidence 99999998887777766666778999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCEEEEEEEeCCC--CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCCCChHHHHH
Q 041985 197 WVGNSTFADLLVILARNTTT--KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTIT 274 (415)
Q Consensus 197 ~vs~~~~ad~~lv~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~~~~~~~~ 274 (415)
|+||+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+..+++.....
T Consensus 170 ~vs~a~~Ad~~~v~a~~~~~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~~~g~~~~~~ 249 (396)
T 3ii9_A 170 WITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT 249 (396)
T ss_dssp EEETGGGCSEEEEEEEEEETTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHHH
T ss_pred eECCCccCCEEEEEEEecCCCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCCChHHHHHHH
Confidence 99999999999999998522 4589999999999999999999999999999999999999999999988788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 041985 275 TLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHAS 354 (415)
Q Consensus 275 ~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~ 354 (415)
.+..+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++
T Consensus 250 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~ 329 (396)
T 3ii9_A 250 CLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITS 329 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCCC
Q 041985 355 LAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASF 404 (415)
Q Consensus 355 ~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~~ 404 (415)
++|.++++.+.++++.++|+|||.||+.++|++| +++++|+|.++|+|+|
T Consensus 330 ~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llglp~~ 395 (396)
T 3ii9_A 330 IMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 395 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhCcccc
Confidence 9999999999999999999999999999999999 9999999999999986
No 5
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=7.6e-67 Score=516.51 Aligned_cols=366 Identities=23% Similarity=0.296 Sum_probs=342.1
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHH
Q 041985 36 ASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVAL 114 (415)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~ 114 (415)
.+++- .|++.++++++++++.+++|+++++.|...++++.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++
T Consensus 16 ~~~~~-~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ 94 (403)
T 3p4t_A 16 TQGPG-SMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVIC 94 (403)
T ss_dssp --------CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHH
T ss_pred ccCCC-CCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHH
Confidence 33555 89999999999999999999999999999999999999999999999999999977 99999999999999999
Q ss_pred HHHHccCCch-hhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEee
Q 041985 115 AEIARVDVSC-SSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEG 193 (415)
Q Consensus 115 e~la~~~~~~-~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG 193 (415)
|++++.|+++ ++.+.+|..++...|..+|+++||++||+++.+|+.++|+++|||++|||+..+.|+|++++|||+|||
T Consensus 95 eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG 174 (403)
T 3p4t_A 95 EEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVING 174 (403)
T ss_dssp HHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEE
T ss_pred HHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEE
Confidence 9999999998 777777766677789999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCEEEEEEEeCCC--CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChH
Q 041985 194 QKRWVGNSTFADLLVILARNTTT--KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQ 270 (415)
Q Consensus 194 ~K~~vs~~~~ad~~lv~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~ 270 (415)
+|.||||+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||++++||.. +++.
T Consensus 175 ~K~~vs~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~ 254 (403)
T 3p4t_A 175 AKTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFA 254 (403)
T ss_dssp EEEEEETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHH
T ss_pred EEEEecCCcccCEEEEEEEeCCCCCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHH
Confidence 99999999999999999999753 57899999999999999999999999999999999999999999999876 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-
Q 041985 271 DTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMT- 349 (415)
Q Consensus 271 ~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~- 349 (415)
.....+..+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+.
T Consensus 255 ~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~ 334 (403)
T 3p4t_A 255 QIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNL 334 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCC
Q 041985 350 AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFAS 403 (415)
Q Consensus 350 ~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~ 403 (415)
...++++|.++++.+.++++.++|++||.||+.++|++| +++++|+|.+ |+|+
T Consensus 335 ~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l-glps 403 (403)
T 3p4t_A 335 IAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL-GFQS 403 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH-TTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc-CCCC
Confidence 778999999999999999999999999999999999999 9999999998 9874
No 6
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-66 Score=510.95 Aligned_cols=362 Identities=35% Similarity=0.638 Sum_probs=338.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
.|++.++++++++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.
T Consensus 6 ~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~ 85 (385)
T 2eba_A 6 ALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERV 85 (385)
T ss_dssp CGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHh
Confidence 56778999999999999999999999998888888999999999999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCc-CCCceEEEEeCCEEEEeeeeeecc
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDA-SALRTTATKVEGGWILEGQKRWVG 199 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~-~~~~t~a~~~~~g~~lnG~K~~vs 199 (415)
|+++++.+.+|..++..+|..+|+++||++|||++.+|++++|+++|||++|||+ ..+.|+|++++|||+|||+|.|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s 165 (385)
T 2eba_A 86 DSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWIT 165 (385)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEE
T ss_pred CchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccC
Confidence 9999988777766667778899999999999999999999999999999999999 899999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCCCChHHHHHHHHHH
Q 041985 200 NSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSIS 279 (415)
Q Consensus 200 ~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~~~~~~~~~~~~~ 279 (415)
|+..||+++|+|++++. ++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|..++++......++.+
T Consensus 166 ~~~~Ad~~~v~a~~~~g-~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l~~~~g~~~~~~~l~~~ 244 (385)
T 2eba_A 166 NGNLAHLAVIWAKDEGG-EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCLTQA 244 (385)
T ss_dssp TTTTCSEEEEEEECC----EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHHHHH
T ss_pred CCcccCEEEEEEEeCCC-cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHccCCCchHHHHHHHHHHH
Confidence 99999999999998632 38899999999999999999999999999999999999999999994457888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 041985 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGW 359 (415)
Q Consensus 280 r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~ 359 (415)
|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++++|.+
T Consensus 245 r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~aK~~ 324 (385)
T 2eba_A 245 RFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQ 324 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCeeCCeeHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777788999999
Q ss_pred HHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCCC
Q 041985 360 ITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASF 404 (415)
Q Consensus 360 ~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~~ 404 (415)
+++.+.++++.++|+|||.||+.++|++| +++.+|++.++|+|++
T Consensus 325 a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llgl~~~ 385 (385)
T 2eba_A 325 NVWKALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITGLNAF 385 (385)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHhCCcccCCcChHHHHHHhccCceeeCChHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999999999999999 8999999999999863
No 7
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=4.9e-66 Score=508.29 Aligned_cols=359 Identities=30% Similarity=0.456 Sum_probs=337.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
.|++.+++++.++++.+++|+++++.|...+.|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.
T Consensus 2 ~m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 81 (387)
T 2d29_A 2 GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY 81 (387)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 47888999999999999999999899998888999999999999999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccC
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGN 200 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 200 (415)
|+++++.+.+|..++...|..+|+++||++|+|++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 161 (387)
T 2d29_A 82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ 161 (387)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence 99988777777556777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC-------CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHH
Q 041985 201 STFADLLVILARNTTT-------KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDT 272 (415)
Q Consensus 201 ~~~ad~~lv~a~~~~~-------~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~ 272 (415)
+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.. +++...
T Consensus 162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 241 (387)
T 2d29_A 162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV 241 (387)
T ss_dssp TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence 9999999999998632 36899999999999999999999999999999999999999999999875 667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhH
Q 041985 273 ITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGH 352 (415)
Q Consensus 273 ~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~ 352 (415)
...++.+|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....
T Consensus 242 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~ 321 (387)
T 2d29_A 242 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLE 321 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCcchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999988766778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 353 ASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 353 ~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
++++|.++++.+.++++.++|+|||.||+.++|++| +++++|++.+++
T Consensus 322 ~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~ 385 (387)
T 2d29_A 322 AAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE 385 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999 788888887765
No 8
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=7.1e-66 Score=505.78 Aligned_cols=357 Identities=31% Similarity=0.479 Sum_probs=336.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
|++.++++++++++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+ ++|||.|+++.+.+.++|++++.|
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~ 80 (379)
T 1ukw_A 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC 80 (379)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 5677999999999999999999999998888999999999999999999999977 999999999999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCC
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNS 201 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~ 201 (415)
+++++.+.+| .++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|+||+
T Consensus 81 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 159 (379)
T 1ukw_A 81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG 159 (379)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence 9988777777 367778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHH
Q 041985 202 TFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLS 277 (415)
Q Consensus 202 ~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~ 277 (415)
..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.. +++......++
T Consensus 160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~ 239 (379)
T 1ukw_A 160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN 239 (379)
T ss_dssp TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHH
T ss_pred CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHH
Confidence 999999999998632 46899999999999999999999999999999999999999999999875 67778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 041985 278 ISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAK 357 (415)
Q Consensus 278 ~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K 357 (415)
.+|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++++|
T Consensus 240 ~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~aK 319 (379)
T 1ukw_A 240 KTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAK 319 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877777899999
Q ss_pred HHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 358 GWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 358 ~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
.++++.+.++++.++|+|||.||+.++|++| +++++|++.+++
T Consensus 320 ~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 320 AYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 788888887765
No 9
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=2.6e-66 Score=511.15 Aligned_cols=358 Identities=31% Similarity=0.437 Sum_probs=328.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
.|++.++++++++++.+++|+++++.|...+.++++.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.
T Consensus 14 ~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~ 93 (393)
T 3pfd_A 14 FELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARV 93 (393)
T ss_dssp --------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999999999999999999999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccC
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGN 200 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 200 (415)
|+++++.+..|. ++...+..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|+||
T Consensus 94 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 172 (393)
T 3pfd_A 94 DCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITN 172 (393)
T ss_dssp CHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecC
Confidence 999888666664 5566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHH
Q 041985 201 STFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTL 276 (415)
Q Consensus 201 ~~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~ 276 (415)
+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||++++||.. +++......+
T Consensus 173 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l 252 (393)
T 3pfd_A 173 GGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATL 252 (393)
T ss_dssp TTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHH
T ss_pred CcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHHH
Confidence 9999999999998643 57899999999999999999999999999999999999999999999985 6788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-chhHHHH
Q 041985 277 SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKM-TAGHASL 355 (415)
Q Consensus 277 ~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~-~~~~~~~ 355 (415)
+.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+ ....+++
T Consensus 253 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~ 332 (393)
T 3pfd_A 253 DHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAA 332 (393)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765 5667899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 356 AKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 356 ~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
+|.++++.+.++++.++|+|||.||+.++|++| +++++|+|.++|
T Consensus 333 aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 333 SKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999 888888888775
No 10
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=1e-65 Score=508.19 Aligned_cols=369 Identities=30% Similarity=0.436 Sum_probs=336.3
Q ss_pred CCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHH
Q 041985 30 SKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCIT 108 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~ 108 (415)
..++..+.+.. .|++.++++++++++.+++|+++++.|...++|+++.+|+++|++|++.||+++.+ ++|||.|+++.
T Consensus 13 ~~~~~~~~~~~-~~~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~ 91 (404)
T 2jif_A 13 LGTENLYFQSM-APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFL 91 (404)
T ss_dssp ------------CCTTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHH
T ss_pred hhhhHHhcccc-cccCCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHH
Confidence 45555666666 77788999999999999999999999998888899999999999999999999977 99999999999
Q ss_pred HHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCE
Q 041985 109 GAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGG 188 (415)
Q Consensus 109 ~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g 188 (415)
+.+.++|++++.|+++++.+.+|..++..+|..+|+++||++|||++.+|+ ++++++|||+.|||...+.|+|++++||
T Consensus 92 ~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g 170 (404)
T 2jif_A 92 STVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDY 170 (404)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTE
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCE
Confidence 999999999999999988877777667778899999999999999999985 7899999999999999999999999999
Q ss_pred EEEeeeeeeccCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCC
Q 041985 189 WILEGQKRWVGNSTFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPG 265 (415)
Q Consensus 189 ~~lnG~K~~vs~~~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~ 265 (415)
|+|||+|.||||+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||++++||.
T Consensus 171 ~vlnG~K~~is~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~ 250 (404)
T 2jif_A 171 YVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQ 250 (404)
T ss_dssp EEEEEEEEEEETTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESS
T ss_pred EEEEeEEEeecCCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCC
Confidence 9999999999999999999999998532 4689999999999999999999999999999999999999999999987
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 266 F-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE 344 (415)
Q Consensus 266 ~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~ 344 (415)
. +++......++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++
T Consensus 251 ~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~ 330 (404)
T 2jif_A 251 IGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLE 330 (404)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 677778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 345 DGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 345 ~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
.+.+....++++|.++++.+.++++.++|+|||.||+.++|++| +++++|++.+++
T Consensus 331 ~g~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~ 402 (404)
T 2jif_A 331 AGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDA 402 (404)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCcceecCCCcHHHHHhhccceeecCCHHHHHHHHHHHHHhh
Confidence 88776777899999999999999999999999999999999999 888888887653
No 11
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.1e-65 Score=505.33 Aligned_cols=358 Identities=30% Similarity=0.422 Sum_probs=337.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCC---CCHHHHHHHHHHHH
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPG---LCITGAAVALAEIA 118 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g---~~~~~~~~v~e~la 118 (415)
|++.++++++++++.+++|+++++.|...++|+.+.+|+++|++|++.||+++.+ ++|||.| +++.+.+.++|+++
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~ 80 (383)
T 1buc_A 1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA 80 (383)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence 5677999999999999999999999999889999999999999999999999977 9999999 99999999999999
Q ss_pred ccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeee
Q 041985 119 RVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV-EGGWILEGQKRW 197 (415)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~-~~g~~lnG~K~~ 197 (415)
+.|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|+++ +|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~ 160 (383)
T 1buc_A 81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF 160 (383)
T ss_dssp HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence 9999988877777656778899999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHH
Q 041985 198 VGNSTFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTI 273 (415)
Q Consensus 198 vs~~~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~ 273 (415)
|||+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.. +++....
T Consensus 161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~ 240 (383)
T 1buc_A 161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAM 240 (383)
T ss_dssp EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHH
T ss_pred cCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHH
Confidence 9999999999999998633 46899999999999999999999999999999999999999999999875 6777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHH
Q 041985 274 TTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHA 353 (415)
Q Consensus 274 ~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~ 353 (415)
..++.+|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....+
T Consensus 241 ~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~ 320 (383)
T 1buc_A 241 MTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDA 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999887777789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 354 SLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 354 ~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
+++|.++++.+.++++.++|+|||.||+.++|++| +++.+|++.++|
T Consensus 321 ~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 383 (383)
T 1buc_A 321 AIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR 383 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999 778888887764
No 12
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=9.6e-66 Score=508.62 Aligned_cols=357 Identities=22% Similarity=0.328 Sum_probs=336.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
.+++.++++|+++++.+++|+++++.|...++++++.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.
T Consensus 24 ~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 103 (403)
T 3r7k_A 24 APEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAA 103 (403)
T ss_dssp -CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 45566899999999999999999999999999999999999999999999999977 99999999999999999999998
Q ss_pred -CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeecc
Q 041985 121 -DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVG 199 (415)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs 199 (415)
|+++++.+.+++.++...|..+|+++||++|||++.+|++++|+++|||++|||+..+.|+|++++|||+|||+|.|||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs 183 (403)
T 3r7k_A 104 GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFIT 183 (403)
T ss_dssp TCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred CCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEccc
Confidence 8888777765556677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC--CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHH
Q 041985 200 NSTFADLLVILARNTTT--KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTL 276 (415)
Q Consensus 200 ~~~~ad~~lv~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~ 276 (415)
|+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||++++||.. +++......+
T Consensus 184 ~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l 263 (403)
T 3r7k_A 184 SGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF 263 (403)
T ss_dssp TTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTH
T ss_pred CCccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHHH
Confidence 99999999999999742 47899999999999999999999999999999999999999999999886 6788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHH
Q 041985 277 SISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLA 356 (415)
Q Consensus 277 ~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~ 356 (415)
+.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++++
T Consensus 264 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~a 343 (403)
T 3r7k_A 264 QAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMA 343 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988778889999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHH
Q 041985 357 KGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREI 398 (415)
Q Consensus 357 K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~ 398 (415)
|.++++.+.++++.++|+|||.||+.++|++| +++++|+|.+
T Consensus 344 K~~a~~~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 344 KNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEecCCchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 7888888765
No 13
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-65 Score=502.21 Aligned_cols=353 Identities=34% Similarity=0.511 Sum_probs=333.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCch
Q 041985 46 LLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSC 124 (415)
Q Consensus 46 ~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~ 124 (415)
.+++|++++++.+++|+++++.|...++|+.+.+|++.|++|++.||+++.+ ++|||.|+++.+.+.++|++++.|+++
T Consensus 2 ~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~ 81 (372)
T 2dvl_A 2 TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSV 81 (372)
T ss_dssp -CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHH
Confidence 4789999999999999999899988888888999999999999999999976 999999999999999999999999998
Q ss_pred hhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCC
Q 041985 125 SSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFA 204 (415)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~a 204 (415)
++.+.+|+.++...|..+|+++||++|+|++.+|+.++|+++|||+.|||...+.|+|++++|||+|||+|.||||+..|
T Consensus 82 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~A 161 (372)
T 2dvl_A 82 AVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHA 161 (372)
T ss_dssp HHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTC
T ss_pred HHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcC
Confidence 88777775467778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHH
Q 041985 205 DLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMV 283 (415)
Q Consensus 205 d~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~ 283 (415)
|+++|+|++++ ++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.. +++......++.+|+..
T Consensus 162 d~~~v~a~~~~--g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~ 239 (372)
T 2dvl_A 162 HLYVVMARTEK--GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGV 239 (372)
T ss_dssp SEEEEEEEETT--EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCC--CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999974 7899999999999999999999999999999999999999999999875 66777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q 041985 284 AWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSR 363 (415)
Q Consensus 284 ~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~~ 363 (415)
++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++++|.++++.
T Consensus 240 aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~ 319 (372)
T 2dvl_A 240 AAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAA 319 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877777899999999999
Q ss_pred HHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 364 ARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 364 a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
+.++++.++|+|||.||+.++|++| +++++|++.+++
T Consensus 320 a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 372 (372)
T 2dvl_A 320 AVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372 (372)
T ss_dssp HHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCeecCCCCcHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999 777888887764
No 14
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=1.8e-65 Score=505.68 Aligned_cols=359 Identities=28% Similarity=0.426 Sum_probs=337.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
.|++.+++++.++++.+++|+++++.|...++|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.
T Consensus 11 ~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 90 (396)
T 1egd_A 11 GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG 90 (396)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhh
Confidence 46778999999999999999999999988888899999999999999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccC
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGN 200 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 200 (415)
|+++++.+ +|..++..+|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||
T Consensus 91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 169 (396)
T 1egd_A 91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN 169 (396)
T ss_dssp CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence 99888776 66656666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC------CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHH
Q 041985 201 STFADLLVILARNTTT------KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTI 273 (415)
Q Consensus 201 ~~~ad~~lv~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~ 273 (415)
+..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.+ +++....
T Consensus 170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~ 249 (396)
T 1egd_A 170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM 249 (396)
T ss_dssp TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHH
T ss_pred CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHH
Confidence 9999999999998643 46889999999999999999999999999999999999999999999875 6677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHH
Q 041985 274 TTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHA 353 (415)
Q Consensus 274 ~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~ 353 (415)
..++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....+
T Consensus 250 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~ 329 (396)
T 1egd_A 250 GAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYA 329 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999887777789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCC
Q 041985 354 SLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGF 401 (415)
Q Consensus 354 ~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~ 401 (415)
+++|.++++.+.++++.++|+|||.||+.++|++| +++.+|++.+++.
T Consensus 330 ~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~ 393 (396)
T 1egd_A 330 SIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 8999999998864
No 15
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=2.4e-65 Score=503.96 Aligned_cols=359 Identities=31% Similarity=0.444 Sum_probs=335.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
|++.++++++++++.+++|+++++.|...++|+++.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.|
T Consensus 2 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 81 (391)
T 2vig_A 2 QSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGC 81 (391)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence 4667899999999999999999999998889999999999999999999999977 999999999999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCC
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNS 201 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~ 201 (415)
+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 161 (391)
T 2vig_A 82 ASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA 161 (391)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCC
Confidence 98888777775456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHH
Q 041985 202 TFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLS 277 (415)
Q Consensus 202 ~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~ 277 (415)
..||+++|+|+++++ +++++|+||++.|||++.+.|+++|+|++++++|.||||+||.+++||.. +++......++
T Consensus 162 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 241 (391)
T 2vig_A 162 WEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLD 241 (391)
T ss_dssp TTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHH
T ss_pred CcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHH
Confidence 999999999998632 36899999999999999999999999999999999999999999999876 66777888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 041985 278 ISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAK 357 (415)
Q Consensus 278 ~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K 357 (415)
.+|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++++|
T Consensus 242 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK 321 (391)
T 2vig_A 242 MGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAK 321 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776677899999
Q ss_pred HHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCC
Q 041985 358 GWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGF 401 (415)
Q Consensus 358 ~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~ 401 (415)
.++++.+.++++.++|+|||.||+.++|++| +++.+|++.+++.
T Consensus 322 ~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~ 381 (391)
T 2vig_A 322 LAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRS 381 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCeEecCCChHHHHHHHhhcceeecCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 8888888888763
No 16
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=2.8e-65 Score=503.76 Aligned_cols=364 Identities=35% Similarity=0.566 Sum_probs=341.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHccC
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
.|++.++++++++++.+++|+++++.|...+.++.+.+|++.|++|++.||+++.+++|||.|+++.+.+.++|++++.|
T Consensus 9 ~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~~~GG~g~~~~~~~~~~eel~~~~ 88 (392)
T 1siq_A 9 VLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVD 88 (392)
T ss_dssp CGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHHHTTC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccHHhhCCCCCCHHHHHHHHHHHHHhC
Confidence 57778999999999999999999999988888888999999999999999999944999999999999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEeeeeeecc
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILEGQKRWVG 199 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~lnG~K~~vs 199 (415)
+++++.+.+|..++...+..+|+++||++|+|++.+|+.++|+++|||++|||+..+.|+|+++ +|||+|||+|.|+|
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~vs 168 (392)
T 1siq_A 89 SGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWIT 168 (392)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEE
T ss_pred cHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEeec
Confidence 9888766666555667788999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCCCChHHHHHHHHHH
Q 041985 200 NSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSIS 279 (415)
Q Consensus 200 ~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~~~~~~~~~~~~~ 279 (415)
|+..||+++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++++..+++......+...
T Consensus 169 ~~~~Ad~~~v~a~~~~-g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~l~~~ 247 (392)
T 1siq_A 169 NSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNA 247 (392)
T ss_dssp TGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCCSSHHHHHHHHHH
T ss_pred CCcccCEEEEEEEECC-CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcccCHHHHHHHHHHH
Confidence 9999999999999963 458999999999999999999999999999999999999999999998777787777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 041985 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGW 359 (415)
Q Consensus 280 r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~ 359 (415)
|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++++|.+
T Consensus 248 r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d~~~~~~~~~~~aK~~ 327 (392)
T 1siq_A 248 RYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRN 327 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777778999999
Q ss_pred HHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCCCCc
Q 041985 360 ITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFKP 406 (415)
Q Consensus 360 ~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~~~~ 406 (415)
+++.+.++++.++|+|||.||+.++|++| +++.+|++.++|+|.|..
T Consensus 328 ~~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llgl~~~~~ 390 (392)
T 1siq_A 328 NCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFTA 390 (392)
T ss_dssp HHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSCCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCccccCCCcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999 899999999999998754
No 17
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=2.7e-65 Score=503.11 Aligned_cols=345 Identities=28% Similarity=0.397 Sum_probs=321.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
+++.++++++++++.+++|+++++.|...++++.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.|
T Consensus 12 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 91 (387)
T 3nf4_A 12 DRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARW 91 (387)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhC
Confidence 3566899999999999999999999999999999999999999999999999977 999999999999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCC
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNS 201 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~ 201 (415)
+++++.+..|. ++...+..+|+++||++|+|++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|+||+
T Consensus 92 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 170 (387)
T 3nf4_A 92 ASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHG 170 (387)
T ss_dssp HHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCC
Confidence 99998777776 67778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeC-CCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHH
Q 041985 202 TFADLLVILARNT-TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSIS 279 (415)
Q Consensus 202 ~~ad~~lv~a~~~-~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~ 279 (415)
..||+++|+|+++ +.+++++|+||++.|||++.+.|+++|++++++++|.||||+||++++||.. +++......++.+
T Consensus 171 ~~Ad~~~v~a~~~~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~ 250 (387)
T 3nf4_A 171 GKADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSG 250 (387)
T ss_dssp TTCSEEEEEEECC--CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHH
T ss_pred cccCEEEEEEEeCCCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHH
Confidence 9999999999986 3367999999999999999999999999999999999999999999999886 6788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 041985 280 RLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGW 359 (415)
Q Consensus 280 r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~ 359 (415)
|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++++|.+
T Consensus 251 r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~aK~~ 330 (387)
T 3nf4_A 251 RLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLT 330 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777889999999
Q ss_pred HHHHHHHHHHHHHHHhccCccCCcchHHH
Q 041985 360 ITSRARETVALGRELLGGNGISTDFHVAK 388 (415)
Q Consensus 360 ~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r 388 (415)
+++.+.++++.++|+|||.||+.++|++|
T Consensus 331 a~~~a~~~~~~a~q~~Gg~G~~~~~~~~r 359 (387)
T 3nf4_A 331 ATDAAMKVTTDAVQVFGGVGYTRDYRVER 359 (387)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGBTTSSHHH
T ss_pred HHHHHHHHHHHHHHhhCcHhhcCCCcHHH
Confidence 99999999999999999999999999999
No 18
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.4e-64 Score=497.64 Aligned_cols=344 Identities=28% Similarity=0.399 Sum_probs=324.2
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 43 FD-GLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 43 ~~-~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
|+ +.+++++.++++.+++|+++++.|...++|+++.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.
T Consensus 5 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~ 84 (385)
T 2pg0_A 5 MTARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKV 84 (385)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 44 66899999999999999999999998889999999999999999999999977 99999999999999999999999
Q ss_pred C-CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeecc
Q 041985 121 D-VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVG 199 (415)
Q Consensus 121 ~-~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs 199 (415)
| +++++.+ |..++...|..+|+++||++|+|++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|+|
T Consensus 85 ~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s 162 (385)
T 2pg0_A 85 GSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFIT 162 (385)
T ss_dssp CGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEET
T ss_pred CCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEeccc
Confidence 9 8887654 555677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC-----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHH
Q 041985 200 NSTFADLLVILARNTTT-----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTI 273 (415)
Q Consensus 200 ~~~~ad~~lv~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~ 273 (415)
|+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.+ +++....
T Consensus 163 ~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~ 242 (385)
T 2pg0_A 163 NGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLM 242 (385)
T ss_dssp TTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHH
T ss_pred CCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 99999999999998632 26899999999999999999999999999999999999999999999885 6778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHH
Q 041985 274 TTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHA 353 (415)
Q Consensus 274 ~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~ 353 (415)
..++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....+
T Consensus 243 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~ 322 (385)
T 2pg0_A 243 EKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEV 322 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999887777789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH
Q 041985 354 SLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388 (415)
Q Consensus 354 ~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r 388 (415)
+++|.++++.+.++++.++|+|||.||+.++|++|
T Consensus 323 ~~aK~~a~e~a~~~~~~a~q~~Gg~g~~~~~~~~r 357 (385)
T 2pg0_A 323 SMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIAR 357 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCCCcHHH
Confidence 99999999999999999999999999999999999
No 19
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.1e-64 Score=499.34 Aligned_cols=358 Identities=28% Similarity=0.403 Sum_probs=333.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
.|++.++++|+++++.+++|+++++.|...++|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.
T Consensus 14 ~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 93 (393)
T 1rx0_A 14 DPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATG 93 (393)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence 45566899999999999999999999988889999999999999999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccC
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGN 200 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 200 (415)
|+++++.+.+|. ++...|..+|+++||++|+|++.+|+.++|+++|||+.|||+..+.|+|++++|||+|||+|.||||
T Consensus 94 ~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 172 (393)
T 1rx0_A 94 CTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISG 172 (393)
T ss_dssp CHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecC
Confidence 998887777775 5667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC--CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHH
Q 041985 201 STFADLLVILARNTTT--KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLS 277 (415)
Q Consensus 201 ~~~ad~~lv~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~ 277 (415)
+..||+++|+|+++++ +++++|+||++.|||++.+.++++|++++++++|.||||+||++++||.. +++......+.
T Consensus 173 a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 252 (393)
T 1rx0_A 173 AGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLN 252 (393)
T ss_dssp TTTCSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred CccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHH
Confidence 9999999999998643 46899999999999999999999999999999999999999999999875 66777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CchhHHHHH
Q 041985 278 ISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK-MTAGHASLA 356 (415)
Q Consensus 278 ~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~-~~~~~~~~~ 356 (415)
.+|+.+++.++|+++++++.+.+|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+. .....++++
T Consensus 253 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~a 332 (393)
T 1rx0_A 253 GGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMA 332 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 345678999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 357 KGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 357 K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
|.++++.+.++++.++|+|||.||+.++|++| +++++|+|.+++
T Consensus 333 K~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 392 (393)
T 1rx0_A 333 KLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeeecCCChHHHHHHhccCceecCChHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 778888887753
No 20
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=6.5e-65 Score=501.38 Aligned_cols=356 Identities=28% Similarity=0.435 Sum_probs=336.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCH--HHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 45 GLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPF--QVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 45 ~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~--~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
+.++++++++++.+++|+++++.|...+.++.+.+|. ++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.|
T Consensus 11 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~ 90 (394)
T 1ivh_A 11 NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRAS 90 (394)
T ss_dssp GTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhc
Confidence 4589999999999999999999998888999999999 9999999999999977 999999999999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCC
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNS 201 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~ 201 (415)
+++++.+.+|..++...|..+|+++||++|||++.+|++++|+++|||+.|||+..+.|+|++++|||+|||+|.||||+
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~ 170 (394)
T 1ivh_A 91 GAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG 170 (394)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETG
T ss_pred hhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCC
Confidence 99988887776567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC-----CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHH
Q 041985 202 TFADLLVILARNTTT-----KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITT 275 (415)
Q Consensus 202 ~~ad~~lv~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~ 275 (415)
..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.. +++......
T Consensus 171 ~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~ 250 (394)
T 1ivh_A 171 PDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSG 250 (394)
T ss_dssp GGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHH
T ss_pred CcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHH
Confidence 999999999998643 36899999999999999999999999999999999999999999999875 677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHH
Q 041985 276 LSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASL 355 (415)
Q Consensus 276 ~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~ 355 (415)
++.+|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....+++
T Consensus 251 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~ 330 (394)
T 1ivh_A 251 LDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAG 330 (394)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988777778999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhC
Q 041985 356 AKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITG 400 (415)
Q Consensus 356 ~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g 400 (415)
+|.++++.+.++++.++|+|||.||+.++|++| +++++|++.+++
T Consensus 331 aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~ 391 (394)
T 1ivh_A 331 VILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNA 391 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 888888888875
No 21
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=9.5e-65 Score=500.90 Aligned_cols=359 Identities=28% Similarity=0.469 Sum_probs=339.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-HHHHHHHHHcCCCCCcc-cccCCCCC--CHHHHHHHHHHHH
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFP-FQVIPKLGALNIAAGTI-KGYGCPGL--CITGAAVALAEIA 118 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~--~~~~~~~v~e~la 118 (415)
|++.++++|+++++.+++|+++++.|...++|+.+.+| +++|++|++.||+++.+ ++|||.|+ +..+.+.++|+++
T Consensus 1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela 80 (397)
T 3mpi_A 1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA 80 (397)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999 99999999999999977 99999999 9999999999999
Q ss_pred ccCCchhhHHHHhhhhHHH-HHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeee
Q 041985 119 RVDVSCSSFILVHSSLAML-TIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRW 197 (415)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~-~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~ 197 (415)
+.|+++++.+.+|. ++.. .+..+|+++||++|+|++.+|++++|+++|||+.|||+..+.|+|++++|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~ 159 (397)
T 3mpi_A 81 RGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW 159 (397)
T ss_dssp HHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred hhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence 99999998887774 4555 789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEEeCCC---CCeeEEEE-eCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHH
Q 041985 198 VGNSTFADLLVILARNTTT---KQINAFIV-KKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDT 272 (415)
Q Consensus 198 vs~~~~ad~~lv~a~~~~~---~~~~~flV-~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~ 272 (415)
+||+..||+++|+|+++++ +++++|+| |++.|||++ +.|+++|++++++++|.||||+||++++||.+ +++...
T Consensus 160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~ 238 (397)
T 3mpi_A 160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV 238 (397)
T ss_dssp EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHH
Confidence 9999999999999998642 46899999 999999999 99999999999999999999999999999886 678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchh
Q 041985 273 ITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG-KMTAG 351 (415)
Q Consensus 273 ~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~-~~~~~ 351 (415)
...++..|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+ .+...
T Consensus 239 ~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~ 318 (397)
T 3mpi_A 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGL 318 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999988 66777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHH-HHHhCCCCC
Q 041985 352 HASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTG-REITGFASF 404 (415)
Q Consensus 352 ~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~-~~~~g~~~~ 404 (415)
.++++|.++++.+.++++.++|+|||.||+.++|++| +++++|+ |.+ |+|..
T Consensus 319 ~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l-gl~~~ 387 (397)
T 3mpi_A 319 DVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL-GVRKA 387 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH-TSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc-CCCcc
Confidence 8999999999999999999999999999999999999 9999999 766 99863
No 22
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2e-64 Score=493.17 Aligned_cols=345 Identities=21% Similarity=0.280 Sum_probs=316.0
Q ss_pred HHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhh
Q 041985 56 KKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSL 134 (415)
Q Consensus 56 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~ 134 (415)
+.+++|+++++.|...++|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.|+++++.+.+|..+
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~ 81 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA 81 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 457899999999998889999999999999999999999977 9999999999999999999999999988877777546
Q ss_pred HHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeC
Q 041985 135 AMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT 214 (415)
Q Consensus 135 ~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~ 214 (415)
+...|. +|+++||++|||++.+|+ ++|+++|||+.|||+..+.|+|++++|||+|||+|.||||+..||+++|+|+++
T Consensus 82 ~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~ 159 (366)
T 1r2j_A 82 AWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQE 159 (366)
T ss_dssp HHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCS
T ss_pred HHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeC
Confidence 667788 999999999999999999 999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHH-HHHHHHHHHHHHHHHHHHHH
Q 041985 215 TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDT-ITTLSISRLMVAWQSIGIAM 292 (415)
Q Consensus 215 ~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~-~~~~~~~r~~~~a~~~G~a~ 292 (415)
+ +++++|+||++.|||++.+.|+++|+|++++++|.||||+||++++||.+ +++... ...++.+|+..++.++|+++
T Consensus 160 ~-~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~ 238 (366)
T 1r2j_A 160 D-GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILR 238 (366)
T ss_dssp S-SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4 37899999999999999999999999999999999999999999999875 677777 77889999999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHHHHHHHHHH
Q 041985 293 GVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG-KMTAGHASLAKGWITSRARETVALG 371 (415)
Q Consensus 293 ~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~-~~~~~~~~~~K~~~~~~a~~v~~~~ 371 (415)
++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+ .+....++++|.++++.+.++++.+
T Consensus 239 ~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~~~~aK~~a~~~a~~~~~~a 318 (366)
T 1r2j_A 239 ACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATA 318 (366)
T ss_dssp HHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887 5666778999999999999999999
Q ss_pred HHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCC
Q 041985 372 RELLGGNGISTDFHVAK----------------INSLLTGREITGFAS 403 (415)
Q Consensus 372 ~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~ 403 (415)
+|+|||.||+.++|++| +++++|++.++|+|+
T Consensus 319 ~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lgl~~ 366 (366)
T 1r2j_A 319 AQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALALPA 366 (366)
T ss_dssp HHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCC-
T ss_pred HHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999 889999999999873
No 23
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=3.7e-64 Score=499.40 Aligned_cols=360 Identities=20% Similarity=0.246 Sum_probs=325.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC------------------CCCHHHHHHHHHcCCCCCcc-cccCC
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKA------------------EFPFQVIPKLGALNIAAGTI-KGYGC 102 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~------------------~~~~~~~~~l~~~Gl~~~~~-~~~GG 102 (415)
.|++.++++++++++.+++|+++++.|...++++.. .+|+++|++|++.||+++.+ ++|||
T Consensus 4 ~M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~GG 83 (415)
T 4hr3_A 4 SMDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPELG 83 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHHCC
Confidence 478889999999999999999999888887766543 26789999999999999977 99999
Q ss_pred CCCCHHHHHHHHHHHHccCCchhhHHH-HhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCC-CCCCcCCCce
Q 041985 103 PGLCITGAAVALAEIARVDVSCSSFIL-VHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPD-YGSDASALRT 180 (415)
Q Consensus 103 ~g~~~~~~~~v~e~la~~~~~~~~~~~-~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~-~gsd~~~~~t 180 (415)
.|+++.+.+.++|++++.|.+..+... .+...+...|..+|+++||++|||++++|++++|+++|||+ .|||+..+.|
T Consensus 84 ~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t 163 (415)
T 4hr3_A 84 GGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAA 163 (415)
T ss_dssp CCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCC
T ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCee
Confidence 999999999999999998754332211 12222346788999999999999999999999999999999 9999999999
Q ss_pred EEEEeCCEEEEeeeeeeccCCCC--CCEEEEEEEeCCC----CCeeEEEEeCCCCCeeeeecCCcccccccC--cccEEe
Q 041985 181 TATKVEGGWILEGQKRWVGNSTF--ADLLVILARNTTT----KQINAFIVKKHAPGLTATKIENKIGLRIVQ--NGDVLL 252 (415)
Q Consensus 181 ~a~~~~~g~~lnG~K~~vs~~~~--ad~~lv~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~--~~~v~f 252 (415)
+|++++|||+|||+|.||||+.. ||+++|+|+++++ +++++|+||++.|||++.+.|+++|+++++ +++|.|
T Consensus 164 ~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~f 243 (415)
T 4hr3_A 164 TAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSF 243 (415)
T ss_dssp EEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEE
T ss_pred EEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEE
Confidence 99999999999999999999966 9999999999643 579999999999999999999999999987 999999
Q ss_pred cceeeCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 041985 253 KNVFVPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQA 331 (415)
Q Consensus 253 ~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a 331 (415)
|||+||++++||.. +++......+..+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++
T Consensus 244 ddv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~a 323 (415)
T 4hr3_A 244 DNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPLVNLGGNRERIADARIAINQ 323 (415)
T ss_dssp EEEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSTTHHHHHHHHHHHHHH
T ss_pred ccEEECHHHcCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999986 67888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHH
Q 041985 332 MILAGWRVCNLYED--GKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLL 393 (415)
Q Consensus 332 ~~~~~~~aa~~~~~--~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~ 393 (415)
+|++++++++.++. +.+....++++|.++++.+.++++.++|+|||.||+.++|++| +++.+
T Consensus 324 ar~~~~~aa~~~d~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ 403 (415)
T 4hr3_A 324 TRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGV 403 (415)
T ss_dssp HHHHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHH
Confidence 99999999999987 4556677899999999999999999999999999999999999 88899
Q ss_pred HHHHHhCC
Q 041985 394 TGREITGF 401 (415)
Q Consensus 394 i~~~~~g~ 401 (415)
|++.++|.
T Consensus 404 ia~~~l~~ 411 (415)
T 4hr3_A 404 VARIELAK 411 (415)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998874
No 24
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=4.6e-63 Score=508.69 Aligned_cols=356 Identities=28% Similarity=0.432 Sum_probs=327.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-CCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 44 DGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKA-EFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 44 ~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~-~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
+..++++|+++++.+++|+++++.|...++++.. .+|+++|++|.+.||+++.+ ++|||.|+++.+.+.++|++++.+
T Consensus 30 p~~lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~ 109 (597)
T 3owa_A 30 PEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG 109 (597)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGT
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccc
Confidence 3447999999999999999999999888877665 68899999999999999977 999999999999999999999986
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEeeeeeecc
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILEGQKRWVG 199 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~lnG~K~~vs 199 (415)
+.+..+..|..++..++..+|+++||++|||++++|++++|+++|||++|||+.++.|+|+++ +++|+|||+|.|||
T Consensus 110 -~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is 188 (597)
T 3owa_A 110 -GFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWIT 188 (597)
T ss_dssp -HHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEE
T ss_pred -hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeC
Confidence 444455566666666788999999999999999999999999999999999999999999995 44599999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHH
Q 041985 200 NSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSI 278 (415)
Q Consensus 200 ~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~ 278 (415)
|+..||+++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.. +++......++.
T Consensus 189 ~a~~Ad~~lV~Art~~-~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~ 267 (597)
T 3owa_A 189 NSAFADVFIVYAKIDG-EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNI 267 (597)
T ss_dssp TTTTCSEEEEEEEETT-TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHH
T ss_pred CCccCCEEEEEEEeCC-CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhhHh
Confidence 9999999999999964 57999999999999999999999999999999999999999999999986 678888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------
Q 041985 279 SRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK----------- 347 (415)
Q Consensus 279 ~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~----------- 347 (415)
+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.+|.+.
T Consensus 268 ~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~ 347 (597)
T 3owa_A 268 GRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDG 347 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999988642
Q ss_pred --------CchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCC
Q 041985 348 --------MTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGF 401 (415)
Q Consensus 348 --------~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~ 401 (415)
+....++++|.++++.+.++++.++|+|||.||+.++|++| +++.+|++.+++.
T Consensus 348 ~~~~~~~~~~~~~~s~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ll~~ 425 (597)
T 3owa_A 348 KAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRK 425 (597)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHHHHHH
Confidence 12346789999999999999999999999999999999999 9999999988874
No 25
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=4.9e-62 Score=501.24 Aligned_cols=353 Identities=29% Similarity=0.438 Sum_probs=325.8
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHh-CCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCch
Q 041985 47 LTSEEQAIRKKVRECAEKELAPIVAEYWEK-AEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSC 124 (415)
Q Consensus 47 l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~-~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~ 124 (415)
+++|++++++.+++|+++++.|...+.+.. ..+|+++|+.|++.||+++.+ ++|||.|++..+.+.++|++ ..|+++
T Consensus 28 ~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s~ 106 (577)
T 2z1q_A 28 FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGGF 106 (577)
T ss_dssp CCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCTH
T ss_pred CCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhcccH
Confidence 689999999999999999888875444422 378999999999999999977 99999999999999999999 888988
Q ss_pred hhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEeeeeeeccCCC
Q 041985 125 SSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILEGQKRWVGNST 202 (415)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~lnG~K~~vs~~~ 202 (415)
++.+.+|..++..+|..+|+++||++|||++.+|++++|+++|||++|||+..+.|+|+++ +++|+|||+|+||||++
T Consensus 107 ~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~ 186 (577)
T 2z1q_A 107 SVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAG 186 (577)
T ss_dssp HHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTT
T ss_pred HHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCC
Confidence 8888888766667899999999999999999999999999999999999999999999984 45799999999999999
Q ss_pred CCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHH
Q 041985 203 FADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRL 281 (415)
Q Consensus 203 ~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~ 281 (415)
.||+++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.. +++......++.+|+
T Consensus 187 ~Ad~~~V~Ar~~g-~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R~ 265 (577)
T 2z1q_A 187 FAHLFTVFAKVDG-EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRY 265 (577)
T ss_dssp TCSEEEEEEEETT-TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHHH
T ss_pred ccCEEEEEEEeCC-CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHHH
Confidence 9999999999974 67999999999999999999999999999999999999999999999875 788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------C
Q 041985 282 MVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDG--------------K 347 (415)
Q Consensus 282 ~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~--------------~ 347 (415)
.+++.++|+++++++.+.+|+++|++||+||++||.+|++|++|.+.++++|++++++++.+|.+ .
T Consensus 266 ~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~ 345 (577)
T 2z1q_A 266 KLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIE 345 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCBCSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999988864 1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHHHhCC
Q 041985 348 MTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGF 401 (415)
Q Consensus 348 ~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~ 401 (415)
+....++++|.++++.+.++++.++|+|||+||+.++|++| +++.+|++.+++.
T Consensus 346 ~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~ 415 (577)
T 2z1q_A 346 EYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415 (577)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHH
Confidence 33456889999999999999999999999999999999999 8888888887764
No 26
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=2.5e-61 Score=482.31 Aligned_cols=358 Identities=18% Similarity=0.232 Sum_probs=325.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHH----hC-CCC--HHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHH
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWE----KA-EFP--FQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVA 113 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~----~~-~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v 113 (415)
.|++.++++|+++++.+++|+++++.|...++++ .. .+| +++|++|++.||+++.+ ++|||.|+++.+.+.+
T Consensus 2 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 81 (438)
T 3mkh_A 2 AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL 81 (438)
T ss_dssp CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 3788899999999999999999999988776643 22 565 89999999999999977 9999999999999999
Q ss_pred HHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcc--cceeEEEecCCCCCC-----CcCCCceEEEEeC
Q 041985 114 LAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQL--KTIASWALTEPDYGS-----DASALRTTATKVE 186 (415)
Q Consensus 114 ~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g--~~~~~~a~tE~~~gs-----d~~~~~t~a~~~~ 186 (415)
+|++++.|+++++.+..+. ++..++..+|+++ |++||+++++| +.++|+++|||++|| |+..+.|+|++++
T Consensus 82 ~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g 159 (438)
T 3mkh_A 82 VEECYSVEPSAALTIFATG-LGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEG 159 (438)
T ss_dssp HHHHHHHCHHHHHHHHHHH-HHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEET
T ss_pred HHHHHhhChhHHHHHHHhh-HHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeC
Confidence 9999999998887765554 5666788899999 99999999996 589999999999998 6889999999999
Q ss_pred CEEEEeeeeeeccCCC-----CCCEEEEEEEeCC---------CCCeeEEEEeCCC-----CC-eeeeecCCcccccccC
Q 041985 187 GGWILEGQKRWVGNST-----FADLLVILARNTT---------TKQINAFIVKKHA-----PG-LTATKIENKIGLRIVQ 246 (415)
Q Consensus 187 ~g~~lnG~K~~vs~~~-----~ad~~lv~a~~~~---------~~~~~~flV~~~~-----pG-v~v~~~~~~~G~r~~~ 246 (415)
|||+|||+|.||||+. .||+++|+|++++ .+++++|+||++. || |++.+.|+++|+++++
T Consensus 160 ~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~ 239 (438)
T 3mkh_A 160 DEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVS 239 (438)
T ss_dssp TEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCC
T ss_pred CEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCC
Confidence 9999999999999997 8999999999853 1468999999875 98 9999999999999999
Q ss_pred cccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCcchhhHHHHHHHH
Q 041985 247 NGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFG-APSATFQITQQKLAQ 324 (415)
Q Consensus 247 ~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg-~~l~~~~~iq~~la~ 324 (415)
+++|.||||+||++++||.. +++......++.+|+.+++.++|+++++++.+++|+++|++|| +||+++|.+|++|++
T Consensus 240 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~pi~~~q~vq~~la~ 319 (438)
T 3mkh_A 240 GPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSG 319 (438)
T ss_dssp CCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCGGGSHHHHHHHHH
T ss_pred ceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCeeccccHHHHHHHHH
Confidence 99999999999999999886 6788888889999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH------------
Q 041985 325 MLGNIQAMILAGWRVCNLYEDGKMT----AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK------------ 388 (415)
Q Consensus 325 ~~~~~~a~~~~~~~aa~~~~~~~~~----~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r------------ 388 (415)
|.++++++|++++++++.++.+... ...++++|.++++.+.++++.++|++||.||+.++|++|
T Consensus 320 ~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~ 399 (438)
T 3mkh_A 320 VKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFD 399 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeec
Confidence 9999999999999999999987542 223678999999999999999999999999999999999
Q ss_pred -----HHHHHHHHHHhCC
Q 041985 389 -----INSLLTGREITGF 401 (415)
Q Consensus 389 -----~~~~~i~~~~~g~ 401 (415)
+++.+|+|.+++.
T Consensus 400 Gt~~~v~~~~i~r~ll~~ 417 (438)
T 3mkh_A 400 GGNVGIRRRHLQQLMLKP 417 (438)
T ss_dssp SCTTTTHHHHHHHHHHST
T ss_pred CChHHHHHHHHHHHHHhc
Confidence 7888888988886
No 27
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=1.7e-60 Score=476.38 Aligned_cols=362 Identities=19% Similarity=0.246 Sum_probs=327.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh----CCCC--HHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHH
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEK----AEFP--FQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALA 115 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~----~~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 115 (415)
|++.+++++.++++.+++|+++++.|...++++. ..+| +++|++|++.||+++.+ ++|||.|+++.+.+.++|
T Consensus 2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 6778999999999999999999999987766543 3455 89999999999999977 999999999999999999
Q ss_pred HHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHh--cccceeEEEecCCCCCC-----CcCCCceEEEEeCCE
Q 041985 116 EIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMA--QLKTIASWALTEPDYGS-----DASALRTTATKVEGG 188 (415)
Q Consensus 116 ~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~--~g~~~~~~a~tE~~~gs-----d~~~~~t~a~~~~~g 188 (415)
++++.|+++++.+.+|. ++..++..+|+++||++|||++. +|++++|+++|||++|| |+..+.|+|++++||
T Consensus 82 ela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g 160 (439)
T 2c12_A 82 ELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 160 (439)
T ss_dssp HHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred HHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCE
Confidence 99999999998777664 56667899999999999999999 69999999999999987 578889999999999
Q ss_pred EEEeeeeeeccCCC-----CCCEEEEEEEe-C----C-----C--CCeeEEEEeCCCC------CeeeeecCCccccccc
Q 041985 189 WILEGQKRWVGNST-----FADLLVILARN-T----T-----T--KQINAFIVKKHAP------GLTATKIENKIGLRIV 245 (415)
Q Consensus 189 ~~lnG~K~~vs~~~-----~ad~~lv~a~~-~----~-----~--~~~~~flV~~~~p------Gv~v~~~~~~~G~r~~ 245 (415)
|+|||+|.||||+. .||+++|+|++ + + + +++++|+||++.| |+++.+.|+++|++++
T Consensus 161 ~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~ 240 (439)
T 2c12_A 161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT 240 (439)
T ss_dssp EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred EEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCC
Confidence 99999999999997 89999999998 5 2 1 3689999999998 8889999999999999
Q ss_pred CcccEEecceeeCCCCCcCCC-CChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccCCCcchhhHHHHHH
Q 041985 246 QNGDVLLKNVFVPDEDRVPGF-KSFQ-DTITTLSISRLMVAWQSIGIAMGVYDMCHRYLME-RKQFGAPSATFQITQQKL 322 (415)
Q Consensus 246 ~~~~v~f~~v~Vp~~~vlg~~-~~~~-~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~-R~~fg~~l~~~~~iq~~l 322 (415)
++++|.||||+||.+++||.. +++. .....+...|+.+++.++|+++++++.+++|+++ |.+||+||+++|.+|++|
T Consensus 241 ~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~~i~~~q~vq~~l 320 (439)
T 2c12_A 241 SGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL 320 (439)
T ss_dssp CCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHHH
T ss_pred CceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeCCeehhccHHHHHHH
Confidence 999999999999999999875 5677 7788889999999999999999999999999996 788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------
Q 041985 323 AQMLGNIQAMILAGWRVCNLYEDGKMT----AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK---------- 388 (415)
Q Consensus 323 a~~~~~~~a~~~~~~~aa~~~~~~~~~----~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r---------- 388 (415)
++|.++++++|++++++++.++.+... ...++++|.++++.+.++++.++|+|||.||+.++|++|
T Consensus 321 a~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i 400 (439)
T 2c12_A 321 IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPL 400 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhccee
Confidence 999999999999999999999887542 235789999999999999999999999999999999999
Q ss_pred -------HHHHHHHHHHhCCCCCCc
Q 041985 389 -------INSLLTGREITGFASFKP 406 (415)
Q Consensus 389 -------~~~~~i~~~~~g~~~~~~ 406 (415)
+++..|++ +++.|.|.|
T Consensus 401 ~~G~~~~~~~~~i~~-~l~~~~~~~ 424 (439)
T 2c12_A 401 FDGGNIGLRRRQMQR-VMALEDYEP 424 (439)
T ss_dssp SSSCTTTTHHHHHHH-HHTSTTCCT
T ss_pred ecCChHHHHHHHHHH-HHhcccchh
Confidence 67777766 455777776
No 28
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.3e-61 Score=476.41 Aligned_cols=358 Identities=18% Similarity=0.233 Sum_probs=313.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHH---HHHHh-----CC-----CCHHHHHHHHHcCCCCCcccccCCCCCCHH
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVA---EYWEK-----AE-----FPFQVIPKLGALNIAAGTIKGYGCPGLCIT 108 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~---~~~~~-----~~-----~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~ 108 (415)
.|++.++++++++++.+++|+++++.|... ++++. .+ +++++|++|++.||+++.+++ |.|+++.
T Consensus 18 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~--G~g~~~~ 95 (428)
T 2wbi_A 18 GQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA--VSGLSHV 95 (428)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH--HHCCCHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC--CCCCCHH
Confidence 577789999999999999999999888766 55432 23 347899999999999998844 7899999
Q ss_pred HHHHHHHHHHccCCch-hhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCC-CCCCcCCCceEEEEeC
Q 041985 109 GAAVALAEIARVDVSC-SSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPD-YGSDASALRTTATKVE 186 (415)
Q Consensus 109 ~~~~v~e~la~~~~~~-~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~-~gsd~~~~~t~a~~~~ 186 (415)
+.+.++|++++.+.+. ++....+..++...|..+|+++||++|||++++|++++|+++|||+ +|||+..+.|+|++++
T Consensus 96 ~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~ 175 (428)
T 2wbi_A 96 DYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDE 175 (428)
T ss_dssp HHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEET
T ss_pred HHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEeC
Confidence 9999999999987432 2211122224556788999999999999999999999999999999 8999999999999999
Q ss_pred CEEEEeeeeeeccCCCC--CCEEEEEEEeCCC-----CCeeEEEEeCCCCCeeeeecCCcccccccC---cccEEeccee
Q 041985 187 GGWILEGQKRWVGNSTF--ADLLVILARNTTT-----KQINAFIVKKHAPGLTATKIENKIGLRIVQ---NGDVLLKNVF 256 (415)
Q Consensus 187 ~g~~lnG~K~~vs~~~~--ad~~lv~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~G~r~~~---~~~v~f~~v~ 256 (415)
|||+|||+|.||||+.. ||+++|+|+++++ +++++|+||++.|||++.+.|+++|+++++ +++|.||||+
T Consensus 176 ~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv~ 255 (428)
T 2wbi_A 176 DSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVR 255 (428)
T ss_dssp TEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEEE
T ss_pred CEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCceE
Confidence 99999999999999987 9999999998643 368999999999999999999999999985 9999999999
Q ss_pred eCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 041985 257 VPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILA 335 (415)
Q Consensus 257 Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~ 335 (415)
||.+++||.. +++......+..+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++
T Consensus 256 VP~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~ 335 (428)
T 2wbi_A 256 VPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLL 335 (428)
T ss_dssp EEGGGBCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHhcCCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 678878888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-C-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHHHHHH
Q 041985 336 GWRVCNLYED-G-KMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGRE 397 (415)
Q Consensus 336 ~~~aa~~~~~-~-~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~ 397 (415)
++++++.++. + .+....++++|.++++.+.++++.++|+|||.||+.++|++| +++.+|++.
T Consensus 336 ~~~aa~~~d~~g~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~ 415 (428)
T 2wbi_A 336 TLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATM 415 (428)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHHH
Confidence 9999999886 2 344567899999999999999999999999999999999999 788888888
Q ss_pred HhCC
Q 041985 398 ITGF 401 (415)
Q Consensus 398 ~~g~ 401 (415)
+++.
T Consensus 416 ~l~~ 419 (428)
T 2wbi_A 416 ELRD 419 (428)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 29
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=3e-60 Score=489.12 Aligned_cols=341 Identities=25% Similarity=0.353 Sum_probs=314.8
Q ss_pred CCCHHHHH----HHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHcc
Q 041985 46 LLTSEEQA----IRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARV 120 (415)
Q Consensus 46 ~l~~~~~~----l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 120 (415)
.+++++++ +++.+++|+++.+.|. ++|+...+|++.|+.|++.||+++.+ ++|||.|++..+.+.+.|++++.
T Consensus 45 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~ 122 (607)
T 2uxw_A 45 VLNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMH 122 (607)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHc
Confidence 45776654 8899999999987653 45677899999999999999999977 99999999999999999999999
Q ss_pred CCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeC--CEEEEeeeeeec
Q 041985 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVE--GGWILEGQKRWV 198 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~--~g~~lnG~K~~v 198 (415)
|+++++.+.+|..++..+|..+|+++||++|||++++|++++|+++|||+.|||+..+.|+|++++ ++|+|||+|+||
T Consensus 123 ~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~i 202 (607)
T 2uxw_A 123 DLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWI 202 (607)
T ss_dssp CHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEee
Confidence 999988887776666678899999999999999999999999999999999999999999999974 479999999999
Q ss_pred cCCCCCCEEEEEEEeCC--------CCCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CCh
Q 041985 199 GNSTFADLLVILARNTT--------TKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSF 269 (415)
Q Consensus 199 s~~~~ad~~lv~a~~~~--------~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~ 269 (415)
|+++.||+++|+|++++ .+++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.+ +|+
T Consensus 203 s~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~ 282 (607)
T 2uxw_A 203 SNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGF 282 (607)
T ss_dssp ETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHH
T ss_pred cCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCCchH
Confidence 99999999999999852 146899999999999999999999999999999999999999999999986 678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C
Q 041985 270 QDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGK-M 348 (415)
Q Consensus 270 ~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~-~ 348 (415)
......++.+|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+.+++++++++.+++.+|.+. +
T Consensus 283 ~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~~~vq~~La~~~~~~eaaral~~~aa~~~d~~~~~ 362 (607)
T 2uxw_A 283 KVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATD 362 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 888889999999999999999999999999999999999999999999999999999999999999999999999764 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH
Q 041985 349 TAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388 (415)
Q Consensus 349 ~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r 388 (415)
....++++|.++++.+.++++.++|+|||.||+.++|++|
T Consensus 363 ~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~~l~r 402 (607)
T 2uxw_A 363 FQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVER 402 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCccHHHH
Confidence 4567899999999999999999999999999999999999
No 30
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=1.5e-57 Score=449.37 Aligned_cols=350 Identities=17% Similarity=0.194 Sum_probs=307.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCC-CCHHHHHHHHHHHHc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPG-LCITGAAVALAEIAR 119 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g-~~~~~~~~v~e~la~ 119 (415)
.+...+|++|+++++.+++|+++ +.|.+.++|+++.+|+++|++|++.||+++.+ ++|||.| .++.+.+.++|++++
T Consensus 4 ~~~~~lt~e~~~~~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~ 82 (395)
T 3mxl_A 4 DLRAPLTPAGRTVVDLLAGVIPR-ISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAE 82 (395)
T ss_dssp SSSSCCSHHHHHHHHHHTTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHHHH-HhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHh
Confidence 45667899999999999999985 88999999999999999999999999999977 9999999 999999999999999
Q ss_pred cCCchhhHHHHhhhhHHHHH--HccCCHHHH---HhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeee
Q 041985 120 VDVSCSSFILVHSSLAMLTI--AQYGSEEQK---QKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQ 194 (415)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l--~~~g~~~qk---~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~ 194 (415)
.|+++++.+.+|...+...+ ..+|+++|| ++|||++.+|+.++|+++|||++|+ ..+. +.++|||+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~---t~~~~g~~lnG~ 157 (395)
T 3mxl_A 83 ADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELH---SDGAGGWLLSGR 157 (395)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEE---ECSSSCEEEEEE
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceE---EecCCEEEEeeE
Confidence 99999888777765444433 467999999 9999999999999999999998653 2222 237888999999
Q ss_pred eeeccCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcC--C-CCC
Q 041985 195 KRWVGNSTFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVP--G-FKS 268 (415)
Q Consensus 195 K~~vs~~~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg--~-~~~ 268 (415)
|.||||+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|+|++++++|.||||+||++++|| . +.+
T Consensus 158 K~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g 237 (395)
T 3mxl_A 158 KVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGAR 237 (395)
T ss_dssp EEEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCC
T ss_pred EEEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCcc
Confidence 9999999999999999998643 357899999999999999999999999999999999999999999998 3 345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Q 041985 269 FQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYED--- 345 (415)
Q Consensus 269 ~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~--- 345 (415)
+.........+|+.+++.++|+++++++.+.+|++ |+|++++|.+|++|++|.++++++|++++++++.++.
T Consensus 238 ~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~ 312 (395)
T 3mxl_A 238 RDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GRGGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASV 312 (395)
T ss_dssp CTTHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 54444445668999999999999999999999999 4689999999999999999999999999999998875
Q ss_pred ---CC-C-----chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-----------------HHHHHHHHHHh
Q 041985 346 ---GK-M-----TAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-----------------INSLLTGREIT 399 (415)
Q Consensus 346 ---~~-~-----~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-----------------~~~~~i~~~~~ 399 (415)
+. . ....++++|.++++.+.++++.++|+|||.||+.++|++| +++++|+|.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~L 392 (395)
T 3mxl_A 313 DLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQAL 392 (395)
T ss_dssp TCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHHS
T ss_pred ccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 11 1 1135678999999999999999999999999999999999 78888999999
Q ss_pred CCC
Q 041985 400 GFA 402 (415)
Q Consensus 400 g~~ 402 (415)
|+|
T Consensus 393 glp 395 (395)
T 3mxl_A 393 GLD 395 (395)
T ss_dssp CC-
T ss_pred CCC
Confidence 886
No 31
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=8.9e-57 Score=446.21 Aligned_cols=344 Identities=13% Similarity=0.077 Sum_probs=304.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985 43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD 121 (415)
Q Consensus 43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 121 (415)
.++.+++++.++++.+++|+++ +.|.+.+.|+++.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.|
T Consensus 14 ~~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~ 92 (414)
T 2or0_A 14 RENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALD 92 (414)
T ss_dssp ---------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 4556899999999999999986 88888888899999999999999999999977 999999999999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCC
Q 041985 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNS 201 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~ 201 (415)
+++++.+..|. ++...+..+|+++||++|++ +|+.++|+++| | .|+|++++|||+|||+|.||||+
T Consensus 93 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a 158 (414)
T 2or0_A 93 GASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSGT 158 (414)
T ss_dssp HHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETTG
T ss_pred hHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCCC
Confidence 99887766664 67778899999999999999 79999999988 4 58999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC---C---CeeEEEEeCCCCCeeee-ecCCcccccccCcccEEecceeeCCCCCcCCC--------
Q 041985 202 TFADLLVILARNTTT---K---QINAFIVKKHAPGLTAT-KIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-------- 266 (415)
Q Consensus 202 ~~ad~~lv~a~~~~~---~---~~~~flV~~~~pGv~v~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-------- 266 (415)
..||+++|+|+++++ + ++++|+||++ ||++. +.|+++|++++++++|.||||+||.+++|+..
T Consensus 159 ~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~~ 236 (414)
T 2or0_A 159 DHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQ 236 (414)
T ss_dssp GGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHHH
T ss_pred chhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCCC
Confidence 999999999998631 3 7899999998 99999 99999999999999999999999999999751
Q ss_pred -----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 267 -----KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQF-GAPSATFQITQQKLAQMLGNIQAMILAGWRVC 340 (415)
Q Consensus 267 -----~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~f-g~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa 340 (415)
+++......+..+|+.+++.++|+++++++.+++|+++|++| |+||+++|.+|++|++|.++++++|+++++++
T Consensus 237 g~~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~~i~~~q~vq~~la~~~~~~~aar~l~~~aa 316 (414)
T 2or0_A 237 KEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIETA 316 (414)
T ss_dssp HHHTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSCBGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344455778899999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHH----cCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-----------------HHHHHHH
Q 041985 341 NLYE----DGKMT----AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-----------------INSLLTG 395 (415)
Q Consensus 341 ~~~~----~~~~~----~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-----------------~~~~~i~ 395 (415)
+.++ .+.+. ...++++|.++++.+.++++.++|++||.||+.++|++| +++.+|+
T Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia 396 (414)
T 2or0_A 317 DRFYDKVDAGKEITFEERAIGRRTQIAAAWRAVRAADEIFARAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASA 396 (414)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHH
Confidence 9998 65442 246789999999999999999999999999999999999 7888899
Q ss_pred HHHhCCCC
Q 041985 396 REITGFAS 403 (415)
Q Consensus 396 ~~~~g~~~ 403 (415)
+.++|+|.
T Consensus 397 ~~~lg~~~ 404 (414)
T 2or0_A 397 LTQLGGEP 404 (414)
T ss_dssp HHHTTCCC
T ss_pred HHHhCCCC
Confidence 99999873
No 32
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=2.4e-56 Score=446.40 Aligned_cols=352 Identities=18% Similarity=0.238 Sum_probs=305.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCC-CCHHHHHHHHHHHHc
Q 041985 42 NFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPG-LCITGAAVALAEIAR 119 (415)
Q Consensus 42 ~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g-~~~~~~~~v~e~la~ 119 (415)
.|++.++++++++++.+++|+++ +.|.+.+.++++.+|+++|++|++.||+++.+ ++|||.| .++.+++.++|++++
T Consensus 15 ~m~~~lt~e~~~l~~~~r~~~~~-~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~ 93 (439)
T 3m9v_A 15 GLYAPVTPAGRVLLDRLAAHLPR-IRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVAR 93 (439)
T ss_dssp TTSSCSSHHHHHHHHHHHTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH-HhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHh
Confidence 68888999999999999999985 88888899999999999999999999999977 9999999 899999999999999
Q ss_pred cCCchhhHHHHhhhhHHHH--HHccCCHHH---HHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeee
Q 041985 120 VDVSCSSFILVHSSLAMLT--IAQYGSEEQ---KQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQ 194 (415)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~--l~~~g~~~q---k~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~ 194 (415)
.|+++++.+.+|......+ +..+|+++| |++||+++.+|+.++|+++|||+++ ...+. +.++|||+|||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~~--~~~~~---t~~~~g~vlnG~ 168 (439)
T 3m9v_A 94 ADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTA--VTTLR---PDGAGGWLLSGR 168 (439)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTTC--CCEEE---ECSSSCEEEEEE
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCCC--CCcee---eccCCEEEEEeE
Confidence 9999888777775444433 457799999 9999999999999999999999753 32222 237888999999
Q ss_pred eeeccCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcC--CC-CC
Q 041985 195 KRWVGNSTFADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVP--GF-KS 268 (415)
Q Consensus 195 K~~vs~~~~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg--~~-~~ 268 (415)
|+|+||+..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+ .. .+
T Consensus 169 K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~g 248 (439)
T 3m9v_A 169 KTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGAR 248 (439)
T ss_dssp EEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--CC
T ss_pred EEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCch
Confidence 9999999999999999999643 468999999999999999999999999999999999999999999998 32 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Q 041985 269 FQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYED--- 345 (415)
Q Consensus 269 ~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~--- 345 (415)
+.........+|+.+++.++|+++++++.+++|++. ++++++|.+|++|++|.++++++|++++++++.++.
T Consensus 249 ~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~-----r~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~ 323 (439)
T 3m9v_A 249 NDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALER-----RPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSA 323 (439)
T ss_dssp CGGGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHT-----CSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 433333355689999999999999999999999994 589999999999999999999999999999887764
Q ss_pred C---------CCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-----------------HHHHHHHHHHh
Q 041985 346 G---------KMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-----------------INSLLTGREIT 399 (415)
Q Consensus 346 ~---------~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-----------------~~~~~i~~~~~ 399 (415)
. ......++++|+++++.+.++++.++|+|||.||+.++|++| ++++.|++.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~ak~~a~~~a~~v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~~~l 403 (439)
T 3m9v_A 324 DLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQAL 403 (439)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHHHHT
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Confidence 1 112234678999999999999999999999999999999999 56788999999
Q ss_pred CCCCC
Q 041985 400 GFASF 404 (415)
Q Consensus 400 g~~~~ 404 (415)
|++..
T Consensus 404 g~~~~ 408 (439)
T 3m9v_A 404 GIERD 408 (439)
T ss_dssp TC---
T ss_pred CCchh
Confidence 98753
No 33
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=1.9e-55 Score=434.13 Aligned_cols=336 Identities=15% Similarity=0.119 Sum_probs=303.5
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhHHHH
Q 041985 52 QAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILV 130 (415)
Q Consensus 52 ~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~ 130 (415)
.++++.+++|+++ +.|...++|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.|+++++.+.+
T Consensus 10 ~~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~ 88 (394)
T 2rfq_A 10 HEVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSI 88 (394)
T ss_dssp SHHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHH
Confidence 3688999999985 88888889999999999999999999999977 999999999999999999999999998877666
Q ss_pred hhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEE
Q 041985 131 HSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVIL 210 (415)
Q Consensus 131 ~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~ 210 (415)
|. ++...+..+|+++||++|++ +|+.++|+++| | .|+|++++|||+|||+|.||||+..||+++|+
T Consensus 89 ~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~ 154 (394)
T 2rfq_A 89 IG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVLG 154 (394)
T ss_dssp HH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEEE
T ss_pred HH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEEe
Confidence 64 56777889999999999998 79989999987 4 58999999999999999999999999999999
Q ss_pred EEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCC--------C-----CChHHHHH
Q 041985 211 ARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPG--------F-----KSFQDTIT 274 (415)
Q Consensus 211 a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~--------~-----~~~~~~~~ 274 (415)
|+++++ +++++|+||++ ||++.+.|+++|++++++++|.||||+||.+++|+. . +++.....
T Consensus 155 a~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~~ 232 (394)
T 2rfq_A 155 GPVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMP 232 (394)
T ss_dssp EEEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGSC
T ss_pred eeecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCcccccc
Confidence 998322 26899999998 999999999999999999999999999999999964 1 23434445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC
Q 041985 275 TLSISRLMVAWQSIGIAMGVYDMCHRYLMERK---QFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE----DGK 347 (415)
Q Consensus 275 ~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~---~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~----~~~ 347 (415)
.+...|+..++.++|+++++++.+++|+++|+ +||+||+++|.+|++|++|.++++++|++++++++.++ .+.
T Consensus 233 ~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~g~ 312 (394)
T 2rfq_A 233 WGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGE 312 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56788999999999999999999999999999 99999999999999999999999999999999999998 654
Q ss_pred Cc----hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-----------------HHHHHHHHHHhCCCCC
Q 041985 348 MT----AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-----------------INSLLTGREITGFASF 404 (415)
Q Consensus 348 ~~----~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-----------------~~~~~i~~~~~g~~~~ 404 (415)
+. ...++++|.++++.+.++++.++|+|||.||+.++|++| +++.+|++.++|+|..
T Consensus 313 ~~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg~~~~ 390 (394)
T 2rfq_A 313 EVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGLPIT 390 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTCHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCCcHHHHHHHHHHHHcccccCchhHHHHHHHHHhCCCCC
Confidence 42 236789999999999999999999999999999999999 7888999999999853
No 34
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=5.9e-55 Score=434.05 Aligned_cols=336 Identities=14% Similarity=0.111 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCCchhhHHHH
Q 041985 52 QAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDVSCSSFILV 130 (415)
Q Consensus 52 ~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~ 130 (415)
.++++.+++|+++ +.|...+.|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++.|+++++.+..
T Consensus 38 ~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~ 116 (422)
T 2jbr_A 38 VSMLEKIQQILPQ-IAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSL 116 (422)
T ss_dssp CCHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 3578999999984 88888888999999999999999999999977 999999999999999999999999998876666
Q ss_pred hhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEE
Q 041985 131 HSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVIL 210 (415)
Q Consensus 131 ~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~ 210 (415)
| .++...+..+|+++||++|++. |+.++|+++| | .|+|++++|||+|||+|.||||+..||+++|+
T Consensus 117 ~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~ 182 (422)
T 2jbr_A 117 L-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIVG 182 (422)
T ss_dssp H-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEEE
T ss_pred H-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEEE
Confidence 5 3667788899999999999986 8888999988 4 47999999999999999999999999999999
Q ss_pred EEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC---------CC-----hHHHH
Q 041985 211 ARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF---------KS-----FQDTI 273 (415)
Q Consensus 211 a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~---------~~-----~~~~~ 273 (415)
|+++++ +++++|+||++ ||++.+.|+++|++++++++|.||||+||++++||.. .+ +....
T Consensus 183 a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~~ 260 (422)
T 2jbr_A 183 FNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYT 260 (422)
T ss_dssp EEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSSS
T ss_pred EEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCccccc
Confidence 998532 36899999998 9999999999999999999999999999999999752 23 33445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC
Q 041985 274 TTLSISRLMVAWQSIGIAMGVYDMCHRYLMERK--QFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE----DGK 347 (415)
Q Consensus 274 ~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~--~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~----~~~ 347 (415)
..+..+|+..++.++|+++++++.+++|+++|+ +||+||+++|.+|++|++|.++++++|++++++++.++ .+.
T Consensus 261 ~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~g~ 340 (422)
T 2jbr_A 261 PYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQ 340 (422)
T ss_dssp CHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567888999999999999999999999999998 99999999999999999999999999999999999998 554
Q ss_pred Cc----hhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH-----------------HHHHHHHHHHhCCCCC
Q 041985 348 MT----AGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-----------------INSLLTGREITGFASF 404 (415)
Q Consensus 348 ~~----~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-----------------~~~~~i~~~~~g~~~~ 404 (415)
+. ...++++|.++++.+.++++.++|+|||.||+.++|++| +++.+|++.++|+|..
T Consensus 341 ~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg~~~~ 418 (422)
T 2jbr_A 341 YPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQILGRELMGMEPD 418 (422)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCHHHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCcHHHHHHHHHHHhcCCccchhHHHHHHHHHHhCCCCC
Confidence 42 246889999999999999999999999999999999999 6888999999999854
No 35
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=2.2e-50 Score=419.73 Aligned_cols=346 Identities=21% Similarity=0.235 Sum_probs=296.0
Q ss_pred CC-HHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHccCCchh
Q 041985 47 LT-SEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCS 125 (415)
Q Consensus 47 l~-~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~~~~~ 125 (415)
++ +|+.++++.+++|+.+.-... ...+....++++.|+.|++.|++...+++|| .+..+...+.+++ +.+++
T Consensus 26 ~~~~e~~~lr~~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G---~~~~~~~~v~e~~---~~~~~ 98 (659)
T 1w07_A 26 AGSRHAFEVSDRIARLVASDPVFE-KSNRARLSRKELFKSTLRKCAHAFKRIIELR---LNEEEAGRLRHFI---DQPAY 98 (659)
T ss_dssp HSSHHHHHHHHHHHHHHHTCGGGC-CTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHH---CCCCH
T ss_pred CCChHHHHHHHHHHHHHhcCcccc-cCCccCCChHHHHHHHHHHHHHHHHhHHHhC---CCchHHHHHHHHh---ccchh
Confidence 45 889999999999998752211 1111224567889999999888876557787 3567777766665 34444
Q ss_pred hHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----eeeeec
Q 041985 126 SFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILE-----GQKRWV 198 (415)
Q Consensus 126 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~ln-----G~K~~v 198 (415)
+.+|..++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|||+|| |+|+||
T Consensus 99 --~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~i 176 (659)
T 1w07_A 99 --VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWP 176 (659)
T ss_dssp --HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECC
T ss_pred --hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEee
Confidence 5667667778899999999999999999999999999999999999999999999998 6899999 999999
Q ss_pred cC-CCCCCEEEEEEEeCCC---CCeeEEEEeC-C------CCCeeeeecCCccc---ccccCcccEEecceeeCCCCCcC
Q 041985 199 GN-STFADLLVILARNTTT---KQINAFIVKK-H------APGLTATKIENKIG---LRIVQNGDVLLKNVFVPDEDRVP 264 (415)
Q Consensus 199 s~-~~~ad~~lv~a~~~~~---~~~~~flV~~-~------~pGv~v~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~vlg 264 (415)
+| +..||+++|+|+++++ .++++|+||. + .|||++.+.|+++| +++++++.|.||||+||.+++|+
T Consensus 177 s~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lLg 256 (659)
T 1w07_A 177 GGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLM 256 (659)
T ss_dssp TTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCC
T ss_pred cCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHhcC
Confidence 99 8999999999998633 3689999995 5 69999999999999 99999999999999999999998
Q ss_pred C-------CCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-------CcchhhHHHHHHHH
Q 041985 265 G-------FKSF------QDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGA-------PSATFQITQQKLAQ 324 (415)
Q Consensus 265 ~-------~~~~------~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~-------~l~~~~~iq~~la~ 324 (415)
. +.++ ......+..+|+.+++.++|+++++++.+++|+++|++||+ ||+++|.+|++|++
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~~q~vq~rLa~ 336 (659)
T 1w07_A 257 RLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFP 336 (659)
T ss_dssp SSEEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGSHHHHHHHHH
T ss_pred CcCccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCcccchhccHHHHHHHHH
Confidence 5 2222 23445678899999999999999999999999999999998 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------cCCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----
Q 041985 325 MLGNIQAMILAGWRVCNLYE-------DGKM-----TAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK---- 388 (415)
Q Consensus 325 ~~~~~~a~~~~~~~aa~~~~-------~~~~-----~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r---- 388 (415)
|.+++++++++++.+++.++ .+.. ....++++|.++++.+.++++.|+|+|||+||+.+++++|
T Consensus 337 ~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~rd 416 (659)
T 1w07_A 337 LLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAV 416 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGBGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCHHHHHHh
Confidence 99999999999999988764 3332 2456789999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHhCC
Q 041985 389 ------------INSLLTGREITGF 401 (415)
Q Consensus 389 ------------~~~~~i~~~~~g~ 401 (415)
+++.++++.+++.
T Consensus 417 a~~~~~~eG~~~v~~~~iar~lL~~ 441 (659)
T 1w07_A 417 YVPACTYEGDNVVLQLQVARFLMKT 441 (659)
T ss_dssp HGGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred cceeEEEeCChHHHHHHHHHHHHHH
Confidence 8899999998864
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=1.9e-48 Score=395.44 Aligned_cols=311 Identities=18% Similarity=0.185 Sum_probs=275.5
Q ss_pred HHHHHHHHHcCCCCCc---ccccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhc
Q 041985 81 FQVIPKLGALNIAAGT---IKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQ 157 (415)
Q Consensus 81 ~~~~~~l~~~Gl~~~~---~~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~ 157 (415)
.++++.+.+.||+++. +++|||.+.. ......++..+.+..+...++. .+...|..+| ++||++|+|++.+
T Consensus 89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~----~~~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~s 162 (541)
T 3djl_A 89 HLLMQALCTNRVHNLAWEEDARSGAFVAR----AARFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLS 162 (541)
T ss_dssp HHHHHHHHHTTTTTGGGSTTCCTTHHHHH----HHHHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTC
T ss_pred HHHHHHHHhCCcccCCCCCCCCCCcHHHH----HHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhC
Confidence 5788999999999994 3688854333 2333444444555555555555 3566688888 9999999999999
Q ss_pred ccc-------------eeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeccCCCCCCEEEEEEEeCCCCCeeEEE
Q 041985 158 LKT-------------IASWALTEPDYGSDASALRTTATKV-EGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFI 223 (415)
Q Consensus 158 g~~-------------~~~~a~tE~~~gsd~~~~~t~a~~~-~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~~~~~~fl 223 (415)
|++ +.|+++|||++|||+..++|+|+++ +|+|+|||+|+|+| +..||+++|+|+++ +++++|+
T Consensus 163 ge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~--~Gis~fl 239 (541)
T 3djl_A 163 DRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA--GGLSCFF 239 (541)
T ss_dssp SCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET--TEEEEEE
T ss_pred CCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC--CceEEEE
Confidence 998 7899999999999999999999999 78899999999999 89999999999996 7899999
Q ss_pred EeCCCC-----CeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 224 VKKHAP-----GLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSISRLMVAWQSIGIAMGVYDM 297 (415)
Q Consensus 224 V~~~~p-----Gv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~ 297 (415)
||++.| ||++.+.|+++|+|++++++|+|+||+ +++||.+ +++......++.+|+.+++.++|+++++++.
T Consensus 240 Vp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~ 316 (541)
T 3djl_A 240 VPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSL 316 (541)
T ss_dssp EESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 999999999999999999999999996 7899886 6788888999999999999999999999999
Q ss_pred HHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHHHHHHHHHH
Q 041985 298 CHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMT------AGHASLAKGWITSRARETVALG 371 (415)
Q Consensus 298 a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~------~~~~~~~K~~~~~~a~~v~~~~ 371 (415)
+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.++.+... ...++++|.++++.+.++++.+
T Consensus 317 a~~ya~~R~~fG~~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~~~~~~~~~~~~~~~~aK~~ase~a~~~~~~a 396 (541)
T 3djl_A 317 AIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEA 396 (541)
T ss_dssp HHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccCCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986542 2346899999999999999999
Q ss_pred HHHhccCccCCcchHHH----------------HHHHHHHHHHhCCCC
Q 041985 372 RELLGGNGISTDFHVAK----------------INSLLTGREITGFAS 403 (415)
Q Consensus 372 ~~i~Gg~g~~~~~~~~r----------------~~~~~i~~~~~g~~~ 403 (415)
+|++||.||+.+++++| |+++.|+|.+++.|.
T Consensus 397 ~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~~~~~ 444 (541)
T 3djl_A 397 MEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAG 444 (541)
T ss_dssp HHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCTT
T ss_pred HHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHHhCch
Confidence 99999999999999999 899999999987653
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=4.4e-47 Score=394.34 Aligned_cols=340 Identities=20% Similarity=0.252 Sum_probs=275.9
Q ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHH--------HHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHc
Q 041985 48 TSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQ--------VIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIAR 119 (415)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~--------~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~ 119 (415)
+++..++++++++|+.+. |..... ....+.++ ..+.|.+. .++|||.+ ..+.. +.+++..
T Consensus 26 ~~~~~~~r~~~~~~l~~~--p~~~~~-~~~~~~~~e~~~~~~~~~~~l~~~------~~~~~~~~--~~~~~-~~~~~~~ 93 (661)
T 2ddh_A 26 SPENTRRRREIENLILND--PDFQHE-DYNFLTRSQRYEVAVKKSATMVKK------MREYGISD--PEEIM-WFKNSVH 93 (661)
T ss_dssp SHHHHHHHHHHHHHHHTC--GGGCCS-CGGGSCHHHHHHHHHHHHHHHHHH------HHHTTCCC--HHHHH-HHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcC--cccccC-CcCCCCHHHHHHHHHHHHHHHHHH------HHHcCCCC--chHHH-HHHHHhc
Confidence 467788999999999874 321100 00112221 22222232 15678765 33333 3666655
Q ss_pred cCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----
Q 041985 120 VDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKV--EGGWILE----- 192 (415)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~ln----- 192 (415)
.+. +..+.+|..++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|||+||
T Consensus 94 ~~~--~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~ 171 (661)
T 2ddh_A 94 RGH--PEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVT 171 (661)
T ss_dssp TTC--CCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSST
T ss_pred cch--hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCC
Confidence 433 3334567667888899999999999999999999999999999999999999999999998 7899999
Q ss_pred eeeeeccC-CCCCCEEEEEEEeCCC---CCeeEEEEeC-C------CCCeeeeecCCcccccccCcccEEecceeeCCCC
Q 041985 193 GQKRWVGN-STFADLLVILARNTTT---KQINAFIVKK-H------APGLTATKIENKIGLRIVQNGDVLLKNVFVPDED 261 (415)
Q Consensus 193 G~K~~vs~-~~~ad~~lv~a~~~~~---~~~~~flV~~-~------~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~ 261 (415)
|+|+|++| +..||+++|+|+++.+ .++++|+||. + .|||++.+.|+++|++++++++|.||||+||.++
T Consensus 172 G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~~~ 251 (661)
T 2ddh_A 172 SIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPREN 251 (661)
T ss_dssp TSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGG
T ss_pred eEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECHHH
Confidence 99999999 7899999999998532 4789999994 4 7999999999999999999999999999999999
Q ss_pred CcCCC-----CC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-------CcchhhHHHHHH
Q 041985 262 RVPGF-----KS-------FQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGA-------PSATFQITQQKL 322 (415)
Q Consensus 262 vlg~~-----~~-------~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~-------~l~~~~~iq~~l 322 (415)
+|+.. +| +......+..+|+.+++.++|+++++++.+++|+++|++||+ ||+++|.+|++|
T Consensus 252 lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~vq~rL 331 (661)
T 2ddh_A 252 MLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKL 331 (661)
T ss_dssp BCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGSHHHHHHH
T ss_pred hcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCCCCccccccccHHHHHHH
Confidence 99873 33 345566778899999999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------CCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH--
Q 041985 323 AQMLGNIQAMILAGWRVCNLYED-------GKM-----TAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK-- 388 (415)
Q Consensus 323 a~~~~~~~a~~~~~~~aa~~~~~-------~~~-----~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-- 388 (415)
++|.+++++++++++.+++.++. +.. ....++++|.++++.+.++++.|+|+|||+||+.+++++|
T Consensus 332 a~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~ 411 (661)
T 2ddh_A 332 FPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIY 411 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSGGGSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCcHHHHH
Confidence 99999999999999999998863 322 2446789999999999999999999999999999999999
Q ss_pred --------------HHHHHHHHHHhCC
Q 041985 389 --------------INSLLTGREITGF 401 (415)
Q Consensus 389 --------------~~~~~i~~~~~g~ 401 (415)
+++.+++|.+++.
T Consensus 412 rda~~~~~~eG~~~vl~~~iar~lL~~ 438 (661)
T 2ddh_A 412 VTFTPACTFEGENTVMMLQTARFLMKI 438 (661)
T ss_dssp HHHGGGGTSSSCHHHHHHHHHHHHHHH
T ss_pred HhcceeeEecCchHHHHHHHHHHHHHH
Confidence 8888999998864
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=8e-39 Score=321.15 Aligned_cols=248 Identities=19% Similarity=0.166 Sum_probs=203.8
Q ss_pred HHHccCC--HHHHHhHhHHHhcccceeEEEecCCCCC--------CCc-CCCceEEEEeCCEEEEeeeeeeccCCCCCCE
Q 041985 138 TIAQYGS--EEQKQKYLPSMAQLKTIASWALTEPDYG--------SDA-SALRTTATKVEGGWILEGQKRWVGNSTFADL 206 (415)
Q Consensus 138 ~l~~~g~--~~qk~~~l~~l~~g~~~~~~a~tE~~~g--------sd~-~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~ 206 (415)
.+..||+ ++||++||+++++|++++|+++|||..| ||+ ..+. ++++++|||+|||+|+|+||++.||+
T Consensus 119 ~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad~ 197 (490)
T 1u8v_A 119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSHE 197 (490)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCSE
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccCE
Confidence 4568999 9999999999999999999999999864 665 3344 88999999999999999999999999
Q ss_pred EEEEEEeCC----CCCeeEEEEeCCCCCeeeee---cCCc----------ccc-cc-cCcccEEecceeeCCCCCc--CC
Q 041985 207 LVILARNTT----TKQINAFIVKKHAPGLTATK---IENK----------IGL-RI-VQNGDVLLKNVFVPDEDRV--PG 265 (415)
Q Consensus 207 ~lv~a~~~~----~~~~~~flV~~~~pGv~v~~---~~~~----------~G~-r~-~~~~~v~f~~v~Vp~~~vl--g~ 265 (415)
++|+++++. .++.++|+||.++|||++.+ .+++ +|+ |. .++++|.||||+||++++| |.
T Consensus 198 ~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g~ 277 (490)
T 1u8v_A 198 HIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQE 277 (490)
T ss_dssp EEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEESC
T ss_pred EEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCCC
Confidence 999999742 13478999999999999953 4443 566 63 5778899999999999998 44
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041985 266 F-KSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYE 344 (415)
Q Consensus 266 ~-~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~ 344 (415)
. .++......+.+.|+..+++.+|.+..++..+...... || |+++|.+|++||+|.+.++++|++++++++.++
T Consensus 278 ~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~~---~g--i~~~q~vq~~laem~~~leaar~l~~~aa~~~d 352 (490)
T 1u8v_A 278 YDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAADY---NG--AQKASHVKDKLIEMTHLNETLYCCGIACSAEGY 352 (490)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--chhcHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3 44566666777888877776666666666665543322 44 899999999999999999999999999999886
Q ss_pred c---CC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985 345 D---GK--MTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLL 393 (415)
Q Consensus 345 ~---~~--~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~ 393 (415)
. +. +....++++|+++++.+.++++.++|++||.||+ +|++|..++-
T Consensus 353 ~~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~er~~rd~ 404 (490)
T 1u8v_A 353 PTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT--MPSEADFKSE 404 (490)
T ss_dssp ECTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCTHHHH--CCCHHHHTCC
T ss_pred ccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc--ChHHHHHhCc
Confidence 4 32 3456789999999999999999999999999998 7888855444
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=4.9e-38 Score=315.00 Aligned_cols=235 Identities=17% Similarity=0.149 Sum_probs=199.2
Q ss_pred HHHHHhHhHHHhcccceeEEEecCCCCC--------CCcCCCceEEE-EeCCEEEEeeeeeeccCCCCCCEEEEEEEeCC
Q 041985 145 EEQKQKYLPSMAQLKTIASWALTEPDYG--------SDASALRTTAT-KVEGGWILEGQKRWVGNSTFADLLVILARNTT 215 (415)
Q Consensus 145 ~~qk~~~l~~l~~g~~~~~~a~tE~~~g--------sd~~~~~t~a~-~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~ 215 (415)
++||++||+++++|++++|+++|||+.| ||+. +.++++ +++|||+|||+|+|+|| +.||+++|+|++++
T Consensus 123 ~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~~ 200 (481)
T 2yyk_A 123 AENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSILL 200 (481)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSCC
T ss_pred HHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecCC
Confidence 6999999999999999999999999976 5664 567765 68999999999999999 99999999999852
Q ss_pred --C--CCeeEEEEeCCCCCeeeee--cCCc--------ccccc-cCcccEEecceeeCCCCCc--CCC-CChHHH--HHH
Q 041985 216 --T--KQINAFIVKKHAPGLTATK--IENK--------IGLRI-VQNGDVLLKNVFVPDEDRV--PGF-KSFQDT--ITT 275 (415)
Q Consensus 216 --~--~~~~~flV~~~~pGv~v~~--~~~~--------~G~r~-~~~~~v~f~~v~Vp~~~vl--g~~-~~~~~~--~~~ 275 (415)
+ +++++|+||.++|||++.. .+.+ +|.+. .++++|.||||+||++++| |.. .++... ...
T Consensus 201 ~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~~ 280 (481)
T 2yyk_A 201 QAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGA 280 (481)
T ss_dssp CTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHTH
T ss_pred CCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhhc
Confidence 2 3589999999999999953 3332 46664 6788999999999999998 443 233333 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC--Cch
Q 041985 276 LSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYED---GK--MTA 350 (415)
Q Consensus 276 ~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~---~~--~~~ 350 (415)
+..+|+..++..+|.++.++..+..++.. || |+++|.+|++||+|.++++++|++++++++..+. +. +..
T Consensus 281 l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~g--i~~~q~vq~~laem~~~leaar~l~~~aa~~~d~~~~G~~~~~~ 355 (481)
T 2yyk_A 281 LNHMAHQVVALKTAKTEAFLGVAALMAEG---IG--ADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDR 355 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT--GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTSCEECCH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCcCccH
Confidence 78899999999999999999999888874 44 9999999999999999999999999999998864 32 445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH
Q 041985 351 GHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK 388 (415)
Q Consensus 351 ~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r 388 (415)
..++++|+++++.+.++++.++|++||.|++ +|++|
T Consensus 356 ~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e~ 391 (481)
T 2yyk_A 356 GALDGARNLYPRLYPRIREILEQIGASGLIT--LPSEK 391 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccHH
Confidence 6799999999999999999999999998887 66555
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=100.00 E-value=2.8e-34 Score=287.46 Aligned_cols=253 Identities=13% Similarity=0.094 Sum_probs=192.7
Q ss_pred cCC--HHHHHhHhHHHhcccceeEEEecCCCC--------CCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEEE
Q 041985 142 YGS--EEQKQKYLPSMAQLKTIASWALTEPDY--------GSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILA 211 (415)
Q Consensus 142 ~g~--~~qk~~~l~~l~~g~~~~~~a~tE~~~--------gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a 211 (415)
+|+ .+|+++||+++++|++++++++|||.. |||+ .+.+ ..+++|||+|||+|.||||+..||+++|++
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~-~~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a 204 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRI-VEKTDDGIIVNGVKAVGTGIAFGDYMHIGC 204 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEE-EEECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEE-EEEECCEEEEEEEEEEECCccccCEEEEEE
Confidence 554 588999999999999999999999986 4677 4443 345689999999999999999999999999
Q ss_pred Ee-CCC--CCeeEEEEeCCCCCeeeeecCCcccc-----cc-----cCcccEEecceeeCCCCCc--CCC-CChHHHHHH
Q 041985 212 RN-TTT--KQINAFIVKKHAPGLTATKIENKIGL-----RI-----VQNGDVLLKNVFVPDEDRV--PGF-KSFQDTITT 275 (415)
Q Consensus 212 ~~-~~~--~~~~~flV~~~~pGv~v~~~~~~~G~-----r~-----~~~~~v~f~~v~Vp~~~vl--g~~-~~~~~~~~~ 275 (415)
++ ++. +++++|+||.++|||++...+.+.|. +. ..+++|.||||+||++++| |.. .++......
T Consensus 205 ~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~ 284 (515)
T 3hwc_A 205 LYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRI 284 (515)
T ss_dssp CCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHHH
T ss_pred EecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHHH
Confidence 98 321 23899999999999999887777662 22 2378899999999999999 554 455554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC--Cch
Q 041985 276 LSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYED---GK--MTA 350 (415)
Q Consensus 276 ~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~---~~--~~~ 350 (415)
+...+...++..+|.+..++..+..++. .|| |+++|.||++||+|.+.++++|++++++++..+. +. +..
T Consensus 285 ~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~g--I~~fQ~Vq~kLAem~~~lEaaR~l~~~Aa~~~d~~~~G~~~p~~ 359 (515)
T 3hwc_A 285 FDWVHYHILIRQVLRAELIVGLAILITE---HIG--TSKLPTVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPNP 359 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCH
Confidence 3333222223445555555555544443 244 8999999999999999999999999999998875 32 456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH---HHHHHHHHHHhCC
Q 041985 351 GHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK---INSLLTGREITGF 401 (415)
Q Consensus 351 ~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r---~~~~~i~~~~~g~ 401 (415)
..++++|+++++.+.++++.++|++||.+++....-.. -.+..+-|++-|.
T Consensus 360 ~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~Ps~~d~~~pe~~~~l~ky~~g~ 413 (515)
T 3hwc_A 360 LIYDFGRAHFLQNQMSVMYELLDLAGRSSLMIPSEGQWDDSQSGQWFVKLNNGP 413 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSCCCHHHHHCTTTHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCHHHhcCchhHHHHHHHhCCC
Confidence 67899999999999999999999999999986554222 2334455555543
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.96 E-value=2.6e-28 Score=244.77 Aligned_cols=249 Identities=14% Similarity=0.062 Sum_probs=196.0
Q ss_pred HHHHhHhHHHhcccceeEEEecCCCCC-----CCcCCCceE-EEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeCCC---
Q 041985 146 EQKQKYLPSMAQLKTIASWALTEPDYG-----SDASALRTT-ATKVEGGWILEGQKRWVGNSTFADLLVILARNTTT--- 216 (415)
Q Consensus 146 ~qk~~~l~~l~~g~~~~~~a~tE~~~g-----sd~~~~~t~-a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~--- 216 (415)
+...+|+..+.++++..+.++++|... +....+... .+++++||+|||.|.|+||++.||+++|++++.+.
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~ 213 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG 213 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence 455689999999999999999999641 111222333 45578999999999999999999999999988533
Q ss_pred CCeeEEEEeCCCCCeeeeecCCccccccc----------CcccEEecceeeCCCCCc--CCC-CChHHHHHHHHHHHHHH
Q 041985 217 KQINAFIVKKHAPGLTATKIENKIGLRIV----------QNGDVLLKNVFVPDEDRV--PGF-KSFQDTITTLSISRLMV 283 (415)
Q Consensus 217 ~~~~~flV~~~~pGv~v~~~~~~~G~r~~----------~~~~v~f~~v~Vp~~~vl--g~~-~~~~~~~~~~~~~r~~~ 283 (415)
++.++|+||.|+|||++.......+.+.. .++.|.||||+||+++|+ |.. .++......+...|...
T Consensus 214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~ 293 (517)
T 4g5e_A 214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHA 293 (517)
T ss_dssp GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHH
Confidence 45789999999999999766555544332 236799999999999987 543 34556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--CCchhHHHHHHH
Q 041985 284 AWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYED---G--KMTAGHASLAKG 358 (415)
Q Consensus 284 ~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~---~--~~~~~~~~~~K~ 358 (415)
++..+|.++.++..+..+++.. | +.++|.||++|+||.+.+|+++++++.++..... + .+....++++|.
T Consensus 294 ~~~~~~~~~~~~g~a~~~ae~~---G--i~~fq~Vq~kLaEm~~~~E~~ral~~aaa~~a~~~~~G~~~P~~~~a~~aK~ 368 (517)
T 4g5e_A 294 LIRQSVRAELMAGLAILITEHI---G--TNKIPAVQTRVAKLIGFHQAMLAHIVASEELGFHTPGGAYKPNILIYDFGRA 368 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---T--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---C--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcCcCHHHHHHHHH
Confidence 8889999999999998888653 3 8999999999999999999999999988765432 2 245667899999
Q ss_pred HHHHHHHHHHHHHHHHhccCccCCcchHHH-----HHHHHHHHHHhCC
Q 041985 359 WITSRARETVALGRELLGGNGISTDFHVAK-----INSLLTGREITGF 401 (415)
Q Consensus 359 ~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r-----~~~~~i~~~~~g~ 401 (415)
++++...+++++++|++||.|++- |-++ -.+..+.|++-|.
T Consensus 369 ~a~~~~~rv~~eaiqi~GG~g~~~--Pse~d~~~~~i~~~l~ky~~g~ 414 (517)
T 4g5e_A 369 LYLENFSQMIYELVDLSGRSALIF--ASEDQWNDEALNGWFERMNNGP 414 (517)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTCC--CCHHHHHCTTTHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHhCCccccC--CCHHHhcChhhHHHHHHHhCCC
Confidence 999999999999999999999984 4445 2344566666553
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=92.34 E-value=1 Score=45.75 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=60.7
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-CchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041985 308 FGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYED-GK-MTAGHASLAKGWITSRARETVALGRELL 375 (415)
Q Consensus 308 fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~-~~-~~~~~~~~~K~~~~~~a~~v~~~~~~i~ 375 (415)
+|+.|.+.|.+..+|+++.+++++|.+.+.++.+.+.. +. ....+..+++.||.+...++-..+.++.
T Consensus 482 ~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (597)
T 3owa_A 482 YGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEIEAHAKETL 551 (597)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998875 64 3456789999999999999999888887
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=88.64 E-value=3.2 Score=42.20 Aligned_cols=70 Identities=19% Similarity=0.115 Sum_probs=59.6
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041985 308 FGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMT-AGHASLAKGWITSRARETVALGRELLGG 377 (415)
Q Consensus 308 fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~-~~~~~~~K~~~~~~a~~v~~~~~~i~Gg 377 (415)
.|..+.+.|.+..+|+++.+.++++.+.+.++.+.+..+.+. ..+..+++.++.+...++...+.++..+
T Consensus 506 ~~~~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 576 (607)
T 2uxw_A 506 HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSD 576 (607)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467888899999999999999999999999998877666544 3458899999999989999988887654
No 44
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=38.29 E-value=3.1e+02 Score=27.17 Aligned_cols=63 Identities=21% Similarity=0.125 Sum_probs=52.4
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041985 308 FGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLG 376 (415)
Q Consensus 308 fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~G 376 (415)
+|+.+...|.+-.+++++.+.+..+++.+.++.+. .+. ...+++.++.+...++...+.+++-
T Consensus 468 ~~~~l~~~q~~l~~lad~~~~~~~~~~~l~r~~~~--~~~----~~~l~~~~~~~~~~~~~~~~~~~~~ 530 (577)
T 2z1q_A 468 YGQGVEEEQEVLGAVADILIDAYAAESALLRARRL--GGL----APVLARIYLAQALDRAQAGALSVLP 530 (577)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTT----HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777899999999999999999999888865 222 6889999999999999888777773
Done!