Query 041986
Match_columns 195
No_of_seqs 110 out of 1098
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 12:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09120 p-hydroxycinnamoyl Co 100.0 7.4E-50 1.6E-54 322.4 20.4 194 1-195 1-195 (275)
2 PRK05980 enoyl-CoA hydratase; 100.0 7.7E-49 1.7E-53 314.5 20.0 187 9-195 3-191 (260)
3 PRK06142 enoyl-CoA hydratase; 100.0 1.7E-48 3.8E-53 314.2 19.7 188 7-194 4-200 (272)
4 PRK07260 enoyl-CoA hydratase; 100.0 2.2E-48 4.7E-53 311.0 19.0 188 8-195 1-189 (255)
5 PRK08140 enoyl-CoA hydratase; 100.0 3.2E-48 7E-53 311.2 19.7 188 7-195 2-190 (262)
6 KOG1680 Enoyl-CoA hydratase [L 100.0 4.1E-49 8.9E-54 307.0 13.1 182 7-194 35-217 (290)
7 PRK05862 enoyl-CoA hydratase; 100.0 4.5E-48 9.7E-53 309.5 19.3 182 8-195 3-185 (257)
8 PRK07327 enoyl-CoA hydratase; 100.0 6.1E-48 1.3E-52 310.3 20.1 188 6-195 8-197 (268)
9 PRK08150 enoyl-CoA hydratase; 100.0 5.3E-48 1.2E-52 308.6 19.6 181 9-195 2-183 (255)
10 PRK07799 enoyl-CoA hydratase; 100.0 6.6E-48 1.4E-52 309.5 19.9 189 6-195 2-191 (263)
11 PRK08258 enoyl-CoA hydratase; 100.0 7.9E-48 1.7E-52 311.1 19.9 185 10-194 18-204 (277)
12 PRK09076 enoyl-CoA hydratase; 100.0 1.1E-47 2.3E-52 307.5 20.1 182 9-195 3-186 (258)
13 PRK06190 enoyl-CoA hydratase; 100.0 6.8E-48 1.5E-52 308.2 18.9 183 7-195 2-185 (258)
14 PRK06127 enoyl-CoA hydratase; 100.0 1.4E-47 3.1E-52 308.4 20.7 193 1-195 3-197 (269)
15 PRK05995 enoyl-CoA hydratase; 100.0 9.5E-48 2.1E-52 308.5 19.2 186 7-194 2-188 (262)
16 PRK09674 enoyl-CoA hydratase-i 100.0 9.6E-48 2.1E-52 307.2 19.1 180 9-194 2-182 (255)
17 PRK05674 gamma-carboxygeranoyl 100.0 6.3E-48 1.4E-52 309.7 17.7 188 6-195 2-191 (265)
18 TIGR03210 badI 2-ketocyclohexa 100.0 9.1E-48 2E-52 307.5 18.5 183 8-195 1-185 (256)
19 PRK05809 3-hydroxybutyryl-CoA 100.0 1.9E-47 4.2E-52 306.3 20.4 184 7-194 2-187 (260)
20 PRK06144 enoyl-CoA hydratase; 100.0 1.4E-47 3E-52 307.4 19.5 186 7-195 6-194 (262)
21 PRK07658 enoyl-CoA hydratase; 100.0 1.3E-47 2.8E-52 306.9 19.3 183 9-195 2-185 (257)
22 PRK08138 enoyl-CoA hydratase; 100.0 2E-47 4.3E-52 306.4 19.8 182 7-194 5-188 (261)
23 PRK07511 enoyl-CoA hydratase; 100.0 2E-47 4.4E-52 306.2 19.7 185 10-195 4-189 (260)
24 PRK06143 enoyl-CoA hydratase; 100.0 1.4E-47 3E-52 306.4 18.5 183 8-195 5-190 (256)
25 PRK08139 enoyl-CoA hydratase; 100.0 2.5E-47 5.5E-52 306.4 20.0 185 7-195 9-194 (266)
26 PRK09245 enoyl-CoA hydratase; 100.0 1.8E-47 4E-52 307.4 19.2 185 10-194 4-193 (266)
27 PRK06563 enoyl-CoA hydratase; 100.0 1.1E-47 2.3E-52 307.0 17.6 180 11-194 1-182 (255)
28 PRK05864 enoyl-CoA hydratase; 100.0 1.6E-47 3.6E-52 309.1 18.7 190 6-195 6-201 (276)
29 PRK06023 enoyl-CoA hydratase; 100.0 1.9E-47 4E-52 304.9 18.8 182 9-195 3-188 (251)
30 TIGR01929 menB naphthoate synt 100.0 1.7E-47 3.7E-52 306.4 18.6 184 9-195 2-188 (259)
31 PRK08260 enoyl-CoA hydratase; 100.0 1.8E-47 4E-52 311.5 19.2 187 8-194 3-203 (296)
32 TIGR02280 PaaB1 phenylacetate 100.0 2E-47 4.2E-52 305.7 18.9 183 11-195 1-184 (256)
33 PRK05981 enoyl-CoA hydratase; 100.0 2.2E-47 4.7E-52 307.0 19.1 188 7-194 2-193 (266)
34 PLN02664 enoyl-CoA hydratase/d 100.0 3.5E-47 7.5E-52 307.0 19.9 185 10-194 9-202 (275)
35 PRK07657 enoyl-CoA hydratase; 100.0 3.5E-47 7.6E-52 304.8 19.6 183 9-195 3-188 (260)
36 PRK06688 enoyl-CoA hydratase; 100.0 2.8E-47 6.1E-52 305.3 18.9 184 7-195 3-187 (259)
37 COG1024 CaiD Enoyl-CoA hydrata 100.0 5.4E-47 1.2E-51 303.3 20.1 183 7-192 3-186 (257)
38 PRK06210 enoyl-CoA hydratase; 100.0 3.9E-47 8.4E-52 306.5 17.9 188 7-194 3-198 (272)
39 PRK05869 enoyl-CoA hydratase; 100.0 4E-47 8.8E-52 297.6 17.5 183 8-195 2-190 (222)
40 PRK07468 enoyl-CoA hydratase; 100.0 8.5E-47 1.8E-51 302.9 19.5 185 8-194 3-189 (262)
41 PRK05870 enoyl-CoA hydratase; 100.0 4.9E-47 1.1E-51 302.2 17.7 178 9-190 3-181 (249)
42 PRK06494 enoyl-CoA hydratase; 100.0 1E-46 2.2E-51 302.0 19.4 182 7-195 2-185 (259)
43 PF00378 ECH: Enoyl-CoA hydrat 100.0 4.6E-47 1E-51 301.8 17.2 179 12-194 1-180 (245)
44 PLN02157 3-hydroxyisobutyryl-C 100.0 1.3E-46 2.8E-51 315.1 20.3 189 7-195 35-223 (401)
45 PRK08252 enoyl-CoA hydratase; 100.0 1.2E-46 2.5E-51 300.9 19.2 179 9-195 3-182 (254)
46 PRK07396 dihydroxynaphthoic ac 100.0 9.2E-47 2E-51 304.2 18.7 186 7-195 11-198 (273)
47 PLN02888 enoyl-CoA hydratase 100.0 1.2E-46 2.7E-51 302.2 19.2 181 7-194 7-189 (265)
48 PRK11423 methylmalonyl-CoA dec 100.0 1E-46 2.2E-51 302.1 18.7 182 7-194 2-186 (261)
49 PRK07659 enoyl-CoA hydratase; 100.0 1.2E-46 2.5E-51 301.8 18.9 183 7-194 4-187 (260)
50 PLN02600 enoyl-CoA hydratase 100.0 1.6E-46 3.6E-51 299.4 18.6 176 16-195 2-179 (251)
51 PRK07509 enoyl-CoA hydratase; 100.0 2.5E-46 5.5E-51 300.2 19.8 184 8-192 2-190 (262)
52 PRK07110 polyketide biosynthes 100.0 2.8E-46 6.1E-51 297.7 19.6 182 7-195 3-185 (249)
53 PRK08259 enoyl-CoA hydratase; 100.0 1.4E-46 3E-51 300.3 17.8 181 9-195 3-184 (254)
54 PLN02988 3-hydroxyisobutyryl-C 100.0 2.5E-46 5.3E-51 312.3 19.9 195 1-195 1-195 (381)
55 PRK05617 3-hydroxyisobutyryl-C 100.0 2.2E-46 4.8E-51 310.0 18.6 186 9-194 3-189 (342)
56 PRK03580 carnitinyl-CoA dehydr 100.0 3.9E-46 8.5E-51 298.9 18.8 180 10-195 4-185 (261)
57 PRK07827 enoyl-CoA hydratase; 100.0 7.6E-46 1.6E-50 297.1 19.7 185 7-192 4-188 (260)
58 PRK06495 enoyl-CoA hydratase; 100.0 6.6E-46 1.4E-50 296.9 19.0 182 7-194 2-184 (257)
59 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.2E-45 2.6E-50 294.3 19.6 174 11-193 3-177 (251)
60 PRK08788 enoyl-CoA hydratase; 100.0 1.6E-45 3.6E-50 297.5 20.3 185 10-195 18-212 (287)
61 PRK07854 enoyl-CoA hydratase; 100.0 1.6E-45 3.4E-50 292.4 19.5 171 11-191 2-173 (243)
62 PLN02874 3-hydroxyisobutyryl-C 100.0 1.5E-45 3.2E-50 308.5 19.8 187 7-195 9-195 (379)
63 PRK08290 enoyl-CoA hydratase; 100.0 1.2E-45 2.7E-50 299.4 18.5 187 7-195 2-207 (288)
64 PLN02921 naphthoate synthase 100.0 1.8E-45 3.9E-50 302.2 19.6 187 6-195 62-252 (327)
65 PRK08272 enoyl-CoA hydratase; 100.0 1.7E-45 3.7E-50 300.7 19.1 190 3-195 4-215 (302)
66 PLN03214 probable enoyl-CoA hy 100.0 2.1E-45 4.7E-50 296.7 19.2 185 7-194 9-198 (278)
67 PRK07112 polyketide biosynthes 100.0 3.6E-45 7.7E-50 292.3 18.8 183 7-194 2-185 (255)
68 PRK06072 enoyl-CoA hydratase; 100.0 9.5E-45 2.1E-49 288.8 20.1 172 11-189 2-173 (248)
69 PLN02851 3-hydroxyisobutyryl-C 100.0 9.3E-45 2E-49 303.9 20.9 189 7-195 40-228 (407)
70 PRK08321 naphthoate synthase; 100.0 5.2E-45 1.1E-49 297.6 18.8 188 8-195 22-227 (302)
71 TIGR03200 dearomat_oah 6-oxocy 100.0 1E-44 2.2E-49 296.4 19.4 176 19-195 38-215 (360)
72 PRK07938 enoyl-CoA hydratase; 100.0 5.6E-45 1.2E-49 290.2 17.4 174 14-194 7-181 (249)
73 PRK06213 enoyl-CoA hydratase; 100.0 3.4E-44 7.5E-49 282.6 18.4 179 9-195 3-183 (229)
74 PRK12478 enoyl-CoA hydratase; 100.0 1.6E-44 3.5E-49 294.1 16.8 185 7-195 3-200 (298)
75 PLN02267 enoyl-CoA hydratase/i 100.0 2.1E-43 4.6E-48 279.4 19.3 178 11-192 2-184 (239)
76 PRK11730 fadB multifunctional 100.0 1.9E-43 4.2E-48 316.2 20.5 185 10-195 7-193 (715)
77 cd06558 crotonase-like Crotona 100.0 3.1E-43 6.8E-48 270.5 18.6 182 11-194 1-183 (195)
78 TIGR02437 FadB fatty oxidation 100.0 1.7E-42 3.6E-47 309.8 20.3 185 10-195 7-193 (714)
79 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.2E-41 2.6E-46 304.9 21.6 184 6-192 10-198 (737)
80 TIGR03222 benzo_boxC benzoyl-C 100.0 2.2E-41 4.8E-46 292.6 19.8 192 4-195 6-215 (546)
81 PRK11154 fadJ multifunctional 100.0 2.4E-41 5.2E-46 302.7 19.7 184 9-195 5-194 (708)
82 TIGR02440 FadJ fatty oxidation 100.0 3.4E-41 7.4E-46 301.1 19.6 179 14-195 6-189 (699)
83 TIGR03222 benzo_boxC benzoyl-C 100.0 7.5E-41 1.6E-45 289.3 18.6 182 10-195 259-468 (546)
84 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.2E-40 2.6E-45 288.8 19.7 191 4-195 10-219 (550)
85 KOG0016 Enoyl-CoA hydratase/is 100.0 1.1E-40 2.5E-45 257.4 15.9 190 6-195 4-198 (266)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.2E-40 2.7E-45 288.7 18.0 185 7-195 258-472 (550)
87 KOG1679 Enoyl-CoA hydratase [L 100.0 2.3E-40 5.1E-45 249.1 11.9 181 9-193 27-213 (291)
88 KOG1681 Enoyl-CoA isomerase [L 100.0 9.6E-40 2.1E-44 247.7 10.6 187 7-193 17-216 (292)
89 COG0447 MenB Dihydroxynaphthoi 100.0 9.8E-39 2.1E-43 240.6 7.9 188 6-195 15-207 (282)
90 KOG1684 Enoyl-CoA hydratase [L 100.0 1.9E-35 4.1E-40 237.3 15.0 193 3-195 32-225 (401)
91 KOG1682 Enoyl-CoA isomerase [L 100.0 5E-34 1.1E-38 213.5 12.1 182 10-195 33-215 (287)
92 cd07020 Clp_protease_NfeD_1 No 99.9 1.9E-21 4.1E-26 148.7 12.2 145 20-193 2-166 (187)
93 cd07014 S49_SppA Signal peptid 99.9 1.1E-21 2.4E-26 148.8 10.2 139 36-194 22-171 (177)
94 cd07019 S49_SppA_1 Signal pept 99.7 5.9E-17 1.3E-21 126.1 12.2 87 34-140 19-105 (211)
95 cd00394 Clp_protease_like Case 99.7 6.2E-16 1.3E-20 115.4 12.6 134 33-189 8-161 (161)
96 cd07022 S49_Sppa_36K_type Sign 99.6 2.3E-15 4.9E-20 117.5 11.5 96 26-142 14-110 (214)
97 TIGR00705 SppA_67K signal pept 99.6 5.1E-15 1.1E-19 130.5 12.2 157 14-190 305-509 (584)
98 cd07023 S49_Sppa_N_C Signal pe 99.6 1.6E-14 3.4E-19 112.3 13.0 101 19-141 2-102 (208)
99 cd07016 S14_ClpP_1 Caseinolyti 99.6 1.2E-14 2.6E-19 108.4 10.3 128 36-189 15-160 (160)
100 TIGR00706 SppA_dom signal pept 99.5 1.1E-13 2.3E-18 107.5 11.4 94 19-141 2-97 (207)
101 cd07021 Clp_protease_NfeD_like 99.5 6.7E-13 1.4E-17 100.5 13.8 140 20-192 2-171 (178)
102 cd07018 S49_SppA_67K_type Sign 99.4 1.3E-12 2.9E-17 102.4 9.4 90 33-143 26-115 (222)
103 cd07015 Clp_protease_NfeD Nodu 99.2 1.1E-09 2.5E-14 82.2 13.0 137 32-192 9-165 (172)
104 cd07013 S14_ClpP Caseinolytic 99.0 9.8E-09 2.1E-13 76.7 12.0 132 33-189 9-162 (162)
105 PRK00277 clpP ATP-dependent Cl 98.9 2.1E-08 4.6E-13 77.4 12.1 136 32-193 39-197 (200)
106 PRK12319 acetyl-CoA carboxylas 98.9 1.3E-07 2.9E-12 75.4 14.9 137 30-192 76-214 (256)
107 PRK10949 protease 4; Provision 98.9 1.1E-07 2.3E-12 84.7 15.8 102 16-140 325-431 (618)
108 PRK12553 ATP-dependent Clp pro 98.9 5.6E-08 1.2E-12 75.4 12.2 136 32-192 43-202 (207)
109 CHL00198 accA acetyl-CoA carbo 98.8 2.6E-07 5.6E-12 75.5 15.8 139 30-192 132-270 (322)
110 KOG1683 Hydroxyacyl-CoA dehydr 98.8 9.9E-10 2.1E-14 90.0 0.6 169 18-192 66-240 (380)
111 cd07017 S14_ClpP_2 Caseinolyti 98.8 7.2E-08 1.6E-12 72.7 10.2 132 33-189 18-171 (171)
112 PF00574 CLP_protease: Clp pro 98.7 1.1E-07 2.4E-12 72.3 9.9 135 33-192 25-181 (182)
113 TIGR00513 accA acetyl-CoA carb 98.7 9.5E-07 2.1E-11 72.2 15.3 137 30-192 129-267 (316)
114 PRK14512 ATP-dependent Clp pro 98.7 3.7E-07 8.1E-12 70.3 12.2 134 33-192 32-188 (197)
115 PRK05724 acetyl-CoA carboxylas 98.7 8E-07 1.7E-11 72.7 14.7 139 30-192 129-267 (319)
116 PLN03230 acetyl-coenzyme A car 98.7 1.1E-06 2.3E-11 73.9 15.6 137 31-192 200-337 (431)
117 PLN03229 acetyl-coenzyme A car 98.7 1.8E-06 3.8E-11 76.9 16.0 139 30-192 220-358 (762)
118 CHL00028 clpP ATP-dependent Cl 98.6 1.4E-06 3.1E-11 67.2 12.8 137 32-193 38-197 (200)
119 PRK11778 putative inner membra 98.6 8E-07 1.7E-11 73.2 11.4 104 16-143 89-192 (330)
120 TIGR00493 clpP ATP-dependent C 98.6 2E-06 4.3E-11 65.9 12.9 136 33-191 35-190 (191)
121 PF01972 SDH_sah: Serine dehyd 98.5 3.1E-06 6.6E-11 67.4 12.7 96 30-151 69-164 (285)
122 COG0616 SppA Periplasmic serin 98.5 2E-06 4.3E-11 71.0 11.5 105 18-143 60-166 (317)
123 TIGR03133 malonate_beta malona 98.4 1.7E-05 3.7E-10 63.8 15.3 149 19-193 61-218 (274)
124 PRK14514 ATP-dependent Clp pro 98.4 1.1E-05 2.4E-10 63.0 12.8 135 32-192 62-219 (221)
125 PRK14513 ATP-dependent Clp pro 98.4 1.4E-05 3E-10 61.7 13.0 138 32-194 35-194 (201)
126 PRK12551 ATP-dependent Clp pro 98.4 1.4E-05 3E-10 61.5 12.9 136 32-193 33-191 (196)
127 PRK07189 malonate decarboxylas 98.3 3.3E-05 7.2E-10 62.9 13.9 149 19-193 70-227 (301)
128 TIGR03134 malonate_gamma malon 98.3 9.7E-05 2.1E-09 58.4 15.3 155 16-194 30-191 (238)
129 CHL00174 accD acetyl-CoA carbo 98.2 0.00013 2.8E-09 59.2 14.3 141 19-194 135-281 (296)
130 PRK05654 acetyl-CoA carboxylas 98.1 0.00017 3.6E-09 58.8 13.5 148 16-194 119-268 (292)
131 TIGR00515 accD acetyl-CoA carb 98.0 0.00021 4.5E-09 58.0 13.4 145 19-194 122-267 (285)
132 PF01039 Carboxyl_trans: Carbo 98.0 0.00032 6.9E-09 61.4 14.6 137 20-193 60-206 (493)
133 COG0740 ClpP Protease subunit 98.0 0.00026 5.6E-09 54.3 12.2 135 34-193 37-193 (200)
134 COG1030 NfeD Membrane-bound se 97.9 0.00038 8.2E-09 59.0 13.5 148 16-192 25-188 (436)
135 TIGR00705 SppA_67K signal pept 97.9 9.7E-05 2.1E-09 65.8 10.2 86 36-141 76-161 (584)
136 PF01343 Peptidase_S49: Peptid 97.8 2.7E-05 5.9E-10 57.6 4.6 42 102-143 3-44 (154)
137 TIGR01117 mmdA methylmalonyl-C 97.7 0.00069 1.5E-08 59.5 12.6 151 22-194 319-483 (512)
138 COG0825 AccA Acetyl-CoA carbox 97.6 8.1E-05 1.8E-09 59.6 4.8 91 93-192 176-266 (317)
139 PRK12552 ATP-dependent Clp pro 97.6 0.003 6.4E-08 49.4 13.2 141 34-193 50-215 (222)
140 COG0777 AccD Acetyl-CoA carbox 97.6 0.0024 5.2E-08 50.9 12.2 145 19-194 124-269 (294)
141 TIGR01117 mmdA methylmalonyl-C 97.4 0.0031 6.8E-08 55.4 12.3 106 19-140 84-190 (512)
142 PLN02820 3-methylcrotonyl-CoA 97.4 0.0091 2E-07 53.1 14.9 110 19-140 131-241 (569)
143 PRK10949 protease 4; Provision 96.9 0.0083 1.8E-07 53.9 9.4 86 36-141 95-180 (618)
144 COG4799 Acetyl-CoA carboxylase 95.9 0.051 1.1E-06 47.6 8.4 105 20-140 94-199 (526)
145 PLN02820 3-methylcrotonyl-CoA 95.9 0.15 3.2E-06 45.5 11.4 145 31-193 380-541 (569)
146 KOG0840 ATP-dependent Clp prot 95.2 0.33 7.1E-06 38.6 10.0 132 32-191 100-256 (275)
147 PF01039 Carboxyl_trans: Carbo 95.0 0.21 4.6E-06 43.9 9.4 152 21-194 297-466 (493)
148 KOG0540 3-Methylcrotonyl-CoA c 84.8 11 0.00024 32.7 9.3 146 22-194 353-509 (536)
149 COG0074 SucD Succinyl-CoA synt 82.6 5.7 0.00012 32.3 6.5 53 41-117 188-240 (293)
150 smart00250 PLEC Plectin repeat 81.4 1.3 2.8E-05 24.4 1.8 19 170-188 17-35 (38)
151 COG4799 Acetyl-CoA carboxylase 79.8 13 0.00029 32.9 8.3 156 19-193 326-495 (526)
152 PF02601 Exonuc_VII_L: Exonucl 77.8 7 0.00015 32.2 5.9 79 34-135 53-135 (319)
153 TIGR00237 xseA exodeoxyribonuc 76.4 7.4 0.00016 33.7 5.8 87 33-142 167-256 (432)
154 PF00681 Plectin: Plectin repe 75.7 0.96 2.1E-05 26.0 0.2 19 170-188 17-35 (45)
155 PF06833 MdcE: Malonate decarb 70.5 15 0.00032 29.1 5.7 140 30-192 40-187 (234)
156 PF13607 Succ_CoA_lig: Succiny 67.2 26 0.00056 25.3 6.0 50 41-116 42-92 (138)
157 PF06258 Mito_fiss_Elm1: Mitoc 67.2 71 0.0015 26.4 9.8 126 29-159 121-266 (311)
158 COG1570 XseA Exonuclease VII, 64.6 18 0.00039 31.4 5.5 85 35-142 175-262 (440)
159 PTZ00187 succinyl-CoA syntheta 61.9 34 0.00073 28.5 6.5 15 103-117 250-264 (317)
160 TIGR02886 spore_II_AA anti-sig 61.5 44 0.00095 22.2 6.2 47 12-63 2-48 (106)
161 TIGR00377 ant_ant_sig anti-ant 61.2 45 0.00099 22.1 6.4 49 10-63 4-52 (108)
162 PF01740 STAS: STAS domain; I 56.3 51 0.0011 22.3 5.9 48 11-63 2-57 (117)
163 PF00549 Ligase_CoA: CoA-ligas 55.5 44 0.00094 24.6 5.6 61 41-118 61-121 (153)
164 PLN02522 ATP citrate (pro-S)-l 52.4 45 0.00098 30.4 6.1 14 104-117 249-262 (608)
165 PLN00125 Succinyl-CoA ligase [ 50.6 61 0.0013 26.7 6.2 14 104-117 232-245 (300)
166 PRK00964 tetrahydromethanopter 48.9 53 0.0012 25.8 5.3 69 8-76 16-95 (225)
167 PRK00286 xseA exodeoxyribonucl 47.9 41 0.00089 29.1 5.1 78 34-135 174-252 (438)
168 PF01990 ATP-synt_F: ATP synth 47.9 80 0.0017 20.9 5.6 53 38-117 27-80 (95)
169 COG0252 AnsB L-asparaginase/ar 46.4 1.3E+02 0.0029 25.4 7.7 31 31-61 78-108 (351)
170 PRK13556 azoreductase; Provisi 44.3 1E+02 0.0022 23.5 6.4 79 30-111 15-97 (208)
171 PF03464 eRF1_2: eRF1 domain 2 42.9 56 0.0012 23.1 4.4 44 20-63 26-83 (133)
172 PF01713 Smr: Smr domain; Int 42.4 56 0.0012 20.9 4.0 36 35-70 9-44 (83)
173 PRK05368 homoserine O-succinyl 41.7 1.8E+02 0.0039 24.0 7.7 42 20-63 68-109 (302)
174 PRK14053 methyltransferase; Pr 39.3 77 0.0017 24.2 4.7 69 8-76 13-88 (194)
175 PRK13555 azoreductase; Provisi 37.7 1.4E+02 0.0031 23.0 6.2 79 30-111 15-97 (208)
176 COG3660 Predicted nucleoside-d 36.2 2.4E+02 0.0053 23.1 7.6 119 21-143 131-261 (329)
177 smart00870 Asparaginase Aspara 35.8 1.4E+02 0.003 24.7 6.3 31 31-61 55-85 (323)
178 cd04241 AAK_FomA-like AAK_FomA 35.8 2.2E+02 0.0047 22.4 7.7 37 26-65 13-49 (252)
179 cd07043 STAS_anti-anti-sigma_f 35.8 1.2E+02 0.0026 19.4 5.2 45 13-63 3-47 (99)
180 TIGR00520 asnASE_II L-asparagi 35.5 1.4E+02 0.0031 25.1 6.4 31 31-61 83-113 (349)
181 PRK13505 formate--tetrahydrofo 34.7 92 0.002 28.0 5.2 71 52-126 323-393 (557)
182 COG1131 CcmA ABC-type multidru 34.4 1.2E+02 0.0026 24.7 5.6 39 21-62 157-195 (293)
183 KOG3179 Predicted glutamine sy 34.4 1E+02 0.0022 24.1 4.7 44 54-116 60-104 (245)
184 smart00463 SMR Small MutS-rela 34.1 98 0.0021 19.5 4.1 31 35-65 12-43 (80)
185 cd03255 ABC_MJ0796_Lo1CDE_FtsE 32.0 1.4E+02 0.0031 22.5 5.5 39 21-62 161-199 (218)
186 cd03267 ABC_NatA_like Similar 31.9 1.6E+02 0.0034 22.8 5.8 39 21-62 174-212 (236)
187 TIGR02514 type_III_yscP type I 31.6 1.2E+02 0.0026 21.7 4.5 57 6-62 53-109 (129)
188 KOG0595 Serine/threonine-prote 30.9 3.6E+02 0.0078 23.5 8.4 37 66-102 90-126 (429)
189 cd07561 Peptidase_S41_CPP_like 30.7 1.5E+02 0.0033 23.6 5.6 43 13-62 60-102 (256)
190 PF04536 TPM: TLP18.3, Psb32 a 30.6 80 0.0017 21.3 3.5 30 33-62 2-31 (119)
191 cd03297 ABC_ModC_molybdenum_tr 30.6 1.5E+02 0.0033 22.4 5.4 39 21-62 152-190 (214)
192 KOG3997 Major apurinic/apyrimi 30.4 94 0.002 24.6 4.0 58 14-74 135-192 (281)
193 cd03225 ABC_cobalt_CbiO_domain 30.4 1.6E+02 0.0036 22.1 5.6 38 21-62 155-192 (211)
194 PRK04183 glutamyl-tRNA(Gln) am 30.3 2E+02 0.0044 24.9 6.5 31 31-62 131-162 (419)
195 COG1182 AcpD Acyl carrier prot 30.2 2.6E+02 0.0057 21.7 6.8 116 19-142 4-124 (202)
196 cd03300 ABC_PotA_N PotA is an 30.1 1.6E+02 0.0034 22.7 5.5 39 21-62 151-189 (232)
197 TIGR02717 AcCoA-syn-alpha acet 30.0 1.9E+02 0.0041 25.2 6.4 20 97-117 223-242 (447)
198 PRK06091 membrane protein FdrA 29.9 2E+02 0.0044 26.0 6.5 22 96-117 270-291 (555)
199 cd03298 ABC_ThiQ_thiamine_tran 29.7 1.6E+02 0.0035 22.2 5.4 39 21-62 149-187 (211)
200 cd03214 ABC_Iron-Siderophores_ 29.7 1.7E+02 0.0038 21.5 5.5 39 21-62 118-156 (180)
201 TIGR02211 LolD_lipo_ex lipopro 29.7 1.7E+02 0.0036 22.3 5.5 39 21-62 162-200 (221)
202 PF12170 DNA_pol3_tau_5: DNA p 29.4 2.2E+02 0.0048 20.6 6.1 48 13-62 47-94 (142)
203 COG0528 PyrH Uridylate kinase 29.2 2.9E+02 0.0064 22.0 6.7 54 7-66 4-57 (238)
204 cd03216 ABC_Carb_Monos_I This 29.2 2E+02 0.0044 20.8 5.7 38 21-62 103-140 (163)
205 cd03228 ABCC_MRP_Like The MRP 29.2 1.7E+02 0.0038 21.3 5.3 37 21-62 117-153 (171)
206 TIGR01277 thiQ thiamine ABC tr 29.2 1.8E+02 0.0038 22.1 5.6 39 21-62 149-187 (213)
207 cd01741 GATase1_1 Subgroup of 28.9 1.1E+02 0.0025 22.6 4.4 25 93-117 69-93 (188)
208 cd03265 ABC_DrrA DrrA is the A 28.9 1.8E+02 0.0039 22.1 5.6 39 21-62 152-190 (220)
209 COG1126 GlnQ ABC-type polar am 28.5 1.9E+02 0.0042 23.0 5.5 39 21-62 157-195 (240)
210 TIGR01184 ntrCD nitrate transp 28.4 1.8E+02 0.004 22.4 5.6 39 21-62 135-173 (230)
211 PRK11629 lolD lipoprotein tran 28.4 1.8E+02 0.004 22.3 5.6 39 21-62 166-204 (233)
212 PF08338 DUF1731: Domain of un 28.3 15 0.00032 21.4 -0.5 28 158-186 7-34 (48)
213 cd03259 ABC_Carb_Solutes_like 28.3 1.8E+02 0.0039 22.0 5.4 39 21-62 151-189 (213)
214 PRK10584 putative ABC transpor 28.2 1.8E+02 0.004 22.2 5.5 39 21-62 167-205 (228)
215 cd03245 ABCC_bacteriocin_expor 28.2 1.5E+02 0.0033 22.5 5.1 37 21-62 161-197 (220)
216 cd03261 ABC_Org_Solvent_Resist 28.1 1.7E+02 0.0037 22.5 5.4 39 21-62 157-195 (235)
217 COG1618 Predicted nucleotide k 27.8 85 0.0018 23.7 3.3 23 93-115 118-140 (179)
218 cd03293 ABC_NrtD_SsuB_transpor 27.6 1.9E+02 0.0042 21.9 5.6 39 21-62 152-190 (220)
219 cd03229 ABC_Class3 This class 27.5 2.1E+02 0.0045 21.0 5.6 39 21-62 121-159 (178)
220 cd03257 ABC_NikE_OppD_transpor 27.5 1.9E+02 0.004 22.1 5.5 39 21-62 166-204 (228)
221 cd03301 ABC_MalK_N The N-termi 27.4 1.9E+02 0.0041 21.8 5.4 39 21-62 151-189 (213)
222 PRK10247 putative ABC transpor 27.2 1.9E+02 0.0041 22.2 5.5 40 21-63 158-197 (225)
223 PRK00170 azoreductase; Reviewe 27.1 2.7E+02 0.0058 20.8 6.8 87 22-111 5-94 (201)
224 PRK11831 putative ABC transpor 27.0 1.9E+02 0.004 23.0 5.5 39 21-62 164-202 (269)
225 cd03233 ABC_PDR_domain1 The pl 27.0 2.3E+02 0.0049 21.4 5.8 39 21-61 139-177 (202)
226 TIGR03410 urea_trans_UrtE urea 27.0 2.1E+02 0.0045 21.9 5.7 39 21-62 152-190 (230)
227 PRK13540 cytochrome c biogenes 26.8 2.5E+02 0.0054 21.0 6.0 49 21-73 148-196 (200)
228 cd03235 ABC_Metallic_Cations A 26.8 2.1E+02 0.0045 21.6 5.6 38 21-62 153-190 (213)
229 cd03263 ABC_subfamily_A The AB 26.7 2E+02 0.0043 21.8 5.5 37 21-62 154-190 (220)
230 COG0488 Uup ATPase components 26.6 1.1E+02 0.0023 27.5 4.3 42 21-69 460-501 (530)
231 PRK15112 antimicrobial peptide 26.3 1.8E+02 0.004 23.0 5.4 39 21-62 170-208 (267)
232 TIGR02832 spo_yunB sporulation 26.2 28 0.0006 27.0 0.5 39 11-50 69-107 (204)
233 PRK13646 cbiO cobalt transport 26.1 1.9E+02 0.0042 23.2 5.5 39 21-61 166-204 (286)
234 PF06935 DUF1284: Protein of u 26.1 1.5E+02 0.0032 20.2 4.1 30 33-62 2-31 (103)
235 PRK09984 phosphonate/organopho 26.0 1.9E+02 0.0041 22.8 5.4 39 21-62 173-211 (262)
236 cd03260 ABC_PstB_phosphate_tra 25.9 2.1E+02 0.0046 21.8 5.5 37 21-62 162-198 (227)
237 PRK11248 tauB taurine transpor 25.8 2E+02 0.0043 22.6 5.5 39 21-62 149-187 (255)
238 PRK02228 V-type ATP synthase s 25.8 2.1E+02 0.0046 19.2 6.9 49 39-114 30-79 (100)
239 PF01583 APS_kinase: Adenylyls 25.6 2.5E+02 0.0055 20.6 5.5 67 36-116 17-85 (156)
240 TIGR03864 PQQ_ABC_ATP ABC tran 25.6 2.2E+02 0.0047 22.0 5.6 40 21-63 153-192 (236)
241 PRK03195 hypothetical protein; 25.4 1.4E+02 0.0031 22.7 4.3 54 14-69 117-172 (186)
242 cd03256 ABC_PhnC_transporter A 25.4 2E+02 0.0044 22.1 5.4 39 21-62 165-203 (241)
243 cd03213 ABCG_EPDR ABCG transpo 25.4 2.5E+02 0.0054 21.0 5.7 38 21-62 132-169 (194)
244 TIGR02153 gatD_arch glutamyl-t 25.3 3.3E+02 0.0071 23.5 6.9 32 31-62 118-149 (404)
245 cd03258 ABC_MetN_methionine_tr 25.3 2.1E+02 0.0045 21.9 5.4 39 21-62 161-199 (233)
246 PRK13634 cbiO cobalt transport 25.3 2E+02 0.0044 23.1 5.5 39 21-61 166-204 (290)
247 PF12268 DUF3612: Protein of u 25.3 86 0.0019 23.1 2.9 27 53-79 79-105 (178)
248 TIGR01166 cbiO cobalt transpor 25.2 2.5E+02 0.0053 20.8 5.6 38 21-62 148-185 (190)
249 cd03295 ABC_OpuCA_Osmoprotecti 25.2 2E+02 0.0043 22.3 5.3 39 21-62 156-194 (242)
250 PLN03037 lipase class 3 family 25.1 68 0.0015 28.6 2.7 40 92-131 302-341 (525)
251 cd03230 ABC_DR_subfamily_A Thi 25.1 2.3E+02 0.0049 20.7 5.3 38 21-62 116-153 (173)
252 PRK11300 livG leucine/isoleuci 24.8 2.3E+02 0.0051 22.0 5.7 39 21-62 174-212 (255)
253 TIGR02323 CP_lyasePhnK phospho 24.8 2.2E+02 0.0047 22.2 5.5 39 21-62 169-207 (253)
254 TIGR01019 sucCoAalpha succinyl 24.7 2E+02 0.0044 23.5 5.3 14 104-117 224-237 (286)
255 cd03246 ABCC_Protease_Secretio 24.7 2.6E+02 0.0055 20.4 5.6 38 21-62 117-154 (173)
256 PRK11247 ssuB aliphatic sulfon 24.7 2.2E+02 0.0047 22.6 5.5 39 21-62 154-192 (257)
257 PRK10908 cell division protein 24.6 2.5E+02 0.0053 21.4 5.7 38 21-62 158-195 (222)
258 TIGR02315 ABC_phnC phosphonate 24.6 2.1E+02 0.0046 22.1 5.3 39 21-62 166-204 (243)
259 PRK15093 antimicrobial peptide 24.4 2.1E+02 0.0046 23.6 5.6 39 21-61 179-217 (330)
260 PRK13642 cbiO cobalt transport 24.4 2.2E+02 0.0048 22.7 5.5 39 21-62 161-199 (277)
261 TIGR00960 3a0501s02 Type II (G 24.3 2.5E+02 0.0055 21.2 5.7 38 21-62 159-196 (216)
262 PRK14556 pyrH uridylate kinase 24.3 1.7E+02 0.0037 23.4 4.7 39 29-68 31-69 (249)
263 TIGR03411 urea_trans_UrtD urea 24.3 2.4E+02 0.0051 21.8 5.6 38 21-63 164-201 (242)
264 PRK10575 iron-hydroxamate tran 24.2 2.2E+02 0.0048 22.5 5.5 39 21-62 168-206 (265)
265 PF11215 DUF3010: Protein of u 24.2 2.8E+02 0.0062 20.1 5.7 48 19-71 32-81 (138)
266 cd03237 ABC_RNaseL_inhibitor_d 24.2 2.3E+02 0.0049 22.3 5.4 39 21-62 136-174 (246)
267 TIGR03608 L_ocin_972_ABC putat 24.1 2.6E+02 0.0056 20.9 5.6 38 21-62 155-192 (206)
268 PRK05678 succinyl-CoA syntheta 24.1 2.1E+02 0.0045 23.5 5.3 14 104-117 226-239 (291)
269 PF13304 AAA_21: AAA domain; P 24.1 2.4E+02 0.0051 21.0 5.5 38 20-60 259-296 (303)
270 PRK11701 phnK phosphonate C-P 24.1 2.2E+02 0.0049 22.3 5.5 39 21-62 172-210 (258)
271 PF07859 Abhydrolase_3: alpha/ 24.1 1.2E+02 0.0026 22.6 3.7 41 31-76 43-88 (211)
272 PRK04342 DNA topoisomerase VI 24.1 1.8E+02 0.0038 24.8 5.0 43 104-150 240-288 (367)
273 smart00245 TSPc tail specific 23.7 2.2E+02 0.0048 21.3 5.2 99 17-126 28-133 (192)
274 KOG3425 Uncharacterized conser 23.7 1.6E+02 0.0034 21.0 3.8 37 32-69 6-47 (128)
275 cd03296 ABC_CysA_sulfate_impor 23.7 2.3E+02 0.0051 21.8 5.4 39 21-62 157-195 (239)
276 cd03215 ABC_Carb_Monos_II This 23.6 2.9E+02 0.0062 20.3 5.7 38 21-62 125-162 (182)
277 TIGR03005 ectoine_ehuA ectoine 23.6 2.3E+02 0.0051 22.0 5.5 39 21-62 167-205 (252)
278 PRK10253 iron-enterobactin tra 23.6 2.3E+02 0.0051 22.3 5.5 39 21-62 164-202 (265)
279 KOG1255 Succinyl-CoA synthetas 23.6 4E+02 0.0086 21.6 6.6 38 18-62 203-240 (329)
280 PF04208 MtrA: Tetrahydrometha 23.6 1.2E+02 0.0026 22.9 3.5 69 8-76 13-91 (176)
281 cd03222 ABC_RNaseL_inhibitor T 23.5 3E+02 0.0065 20.5 5.7 39 21-62 92-130 (177)
282 cd03131 GATase1_HTS Type 1 glu 23.4 1.5E+02 0.0033 22.3 4.1 97 21-139 32-129 (175)
283 cd06844 STAS Sulphate Transpor 23.2 2.2E+02 0.0049 18.5 5.6 46 13-63 3-48 (100)
284 cd03217 ABC_FeS_Assembly ABC-t 23.1 2.8E+02 0.0061 20.8 5.6 38 21-62 125-162 (200)
285 cd03299 ABC_ModC_like Archeal 23.0 2.6E+02 0.0057 21.6 5.6 39 21-62 150-188 (235)
286 PRK10771 thiQ thiamine transpo 23.0 2.5E+02 0.0054 21.5 5.5 40 21-63 150-189 (232)
287 PRK14250 phosphate ABC transpo 23.0 2.5E+02 0.0055 21.7 5.5 39 21-62 152-190 (241)
288 cd03231 ABC_CcmA_heme_exporter 22.9 2.9E+02 0.0064 20.7 5.7 38 21-62 146-183 (201)
289 cd03264 ABC_drug_resistance_li 22.9 2.5E+02 0.0054 21.1 5.4 37 21-62 151-187 (211)
290 PRK05665 amidotransferase; Pro 22.6 2.1E+02 0.0045 22.6 4.9 23 93-115 79-101 (240)
291 PRK13635 cbiO cobalt transport 22.5 2.6E+02 0.0057 22.3 5.6 39 21-61 161-199 (279)
292 PRK13633 cobalt transporter AT 22.4 2.4E+02 0.0053 22.5 5.4 39 21-62 165-203 (280)
293 PF04002 RadC: RadC-like JAB d 22.3 2E+02 0.0042 20.1 4.3 46 22-67 69-116 (123)
294 PRK13645 cbiO cobalt transport 22.3 2.5E+02 0.0053 22.6 5.4 39 21-62 171-209 (289)
295 cd03226 ABC_cobalt_CbiO_domain 22.3 3E+02 0.0066 20.5 5.7 38 21-62 147-184 (205)
296 TIGR02324 CP_lyasePhnL phospho 22.3 2.9E+02 0.0063 21.0 5.7 38 21-62 170-207 (224)
297 TIGR00968 3a0106s01 sulfate AB 22.1 2.7E+02 0.0059 21.5 5.5 39 21-62 151-189 (237)
298 PRK13547 hmuV hemin importer A 22.1 2.5E+02 0.0054 22.5 5.4 40 20-62 174-213 (272)
299 PRK09544 znuC high-affinity zi 22.1 2.7E+02 0.0058 21.9 5.5 40 21-63 141-180 (251)
300 PRK10419 nikE nickel transport 22.0 2.5E+02 0.0054 22.3 5.4 39 21-62 172-210 (268)
301 cd00267 ABC_ATPase ABC (ATP-bi 22.0 3E+02 0.0065 19.5 5.7 38 21-62 101-138 (157)
302 cd03232 ABC_PDR_domain2 The pl 21.9 3.2E+02 0.0069 20.3 5.7 38 21-62 129-166 (192)
303 TIGR02982 heterocyst_DevA ABC 21.9 2.7E+02 0.0059 21.1 5.4 39 21-62 162-200 (220)
304 PTZ00293 thymidine kinase; Pro 21.8 2.5E+02 0.0054 21.9 5.1 50 92-141 90-152 (211)
305 PF01268 FTHFS: Formate--tetra 21.8 1.8E+02 0.004 26.2 4.8 76 51-130 321-396 (557)
306 cd03292 ABC_FtsE_transporter F 21.8 2.9E+02 0.0064 20.7 5.6 38 21-62 157-194 (214)
307 PF13479 AAA_24: AAA domain 21.6 2.6E+02 0.0056 21.4 5.2 102 9-112 25-134 (213)
308 KOG0062 ATPase component of AB 21.5 1.3E+02 0.0028 27.0 3.7 36 21-63 503-538 (582)
309 cd05402 NT_PAP_TUTase Nucleoti 21.4 2E+02 0.0044 19.2 4.2 87 36-133 4-100 (114)
310 TIGR01189 ccmA heme ABC export 21.3 3.3E+02 0.0072 20.2 5.7 38 21-62 148-185 (198)
311 cd00477 FTHFS Formyltetrahydro 21.3 2E+02 0.0044 25.7 4.9 47 83-129 334-380 (524)
312 cd03268 ABC_BcrA_bacitracin_re 21.3 2.9E+02 0.0062 20.7 5.4 38 21-62 147-184 (208)
313 PRK13539 cytochrome c biogenes 21.2 3.2E+02 0.0069 20.6 5.6 38 21-62 148-185 (207)
314 PRK10619 histidine/lysine/argi 21.2 3E+02 0.0065 21.5 5.6 38 21-62 173-210 (257)
315 cd03266 ABC_NatA_sodium_export 21.1 3.2E+02 0.007 20.6 5.7 38 21-62 157-194 (218)
316 cd03269 ABC_putative_ATPase Th 21.1 2.8E+02 0.0061 20.8 5.3 38 21-62 149-186 (210)
317 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 21.0 3.1E+02 0.0068 21.0 5.6 38 21-62 163-200 (224)
318 cd07393 MPP_DR1119 Deinococcus 21.0 4E+02 0.0087 20.6 7.0 31 30-62 17-50 (232)
319 PRK13652 cbiO cobalt transport 20.9 2.9E+02 0.0063 22.0 5.6 39 21-62 158-196 (277)
320 PRK13637 cbiO cobalt transport 20.9 2.8E+02 0.0062 22.2 5.5 38 21-61 165-202 (287)
321 cd03240 ABC_Rad50 The catalyti 20.8 3.3E+02 0.0072 20.6 5.6 40 20-62 141-181 (204)
322 PRK11231 fecE iron-dicitrate t 20.8 3.1E+02 0.0066 21.4 5.6 38 21-62 159-196 (255)
323 PRK10418 nikD nickel transport 20.7 2.9E+02 0.0062 21.6 5.4 39 21-62 161-199 (254)
324 TIGR02770 nickel_nikD nickel i 20.6 2.8E+02 0.0062 21.2 5.3 39 21-62 146-184 (230)
325 PRK13636 cbiO cobalt transport 20.6 2.9E+02 0.0063 22.1 5.5 39 21-62 162-200 (283)
326 TIGR02314 ABC_MetN D-methionin 20.5 2.8E+02 0.006 23.2 5.5 40 21-62 161-200 (343)
327 cd03248 ABCC_TAP TAP, the Tran 20.3 3E+02 0.0065 20.9 5.4 37 21-62 171-207 (226)
328 cd03294 ABC_Pro_Gly_Bertaine T 20.1 3.1E+02 0.0067 21.7 5.5 39 21-62 181-219 (269)
329 PF08436 DXP_redisom_C: 1-deox 20.1 1.2E+02 0.0026 20.0 2.5 26 40-66 10-35 (84)
330 TIGR03522 GldA_ABC_ATP gliding 20.1 2.7E+02 0.0059 22.5 5.3 38 21-63 154-191 (301)
331 PRK13507 formate--tetrahydrofo 20.0 2.6E+02 0.0055 25.4 5.3 49 82-130 378-426 (587)
332 PF14331 ImcF-related_N: ImcF- 20.0 4.6E+02 0.01 21.0 7.8 73 34-116 6-80 (266)
333 PRK13548 hmuV hemin importer A 20.0 3E+02 0.0065 21.6 5.4 40 20-62 160-199 (258)
No 1
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=7.4e-50 Score=322.39 Aligned_cols=194 Identities=24% Similarity=0.326 Sum_probs=172.3
Q ss_pred CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh
Q 041986 1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80 (195)
Q Consensus 1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~ 80 (195)
|+|... |+++.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.....
T Consensus 1 ~~~~~~-~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~ 79 (275)
T PRK09120 1 MSYENR-WDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETD 79 (275)
T ss_pred CCcccc-cccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccc
Confidence 566555 8889999999999999999999999999999999999999999999999999999999999999998753221
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986 81 EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL 160 (195)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~ 160 (195)
...........+....++.++..+||||||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 159 (275)
T PRK09120 80 AQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADT 159 (275)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHH
Confidence 11111112233345567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+| ..+++++++|++++|+||+++|||++|||++++
T Consensus 160 iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l 195 (275)
T PRK09120 160 VGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQL 195 (275)
T ss_pred cCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHH
Confidence 99 899999999999999999999999999998764
No 2
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-49 Score=314.46 Aligned_cols=187 Identities=30% Similarity=0.464 Sum_probs=167.8
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEEC 87 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~ 87 (195)
+.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++............
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 3688999999999999999999999999999999999999999999999999999 799999999987542211111122
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986 88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE 166 (195)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~ 166 (195)
..+.+...+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 162 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL 162 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence 344455567888899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++++|++++|+||+++||||++||++++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 191 (260)
T PRK05980 163 ELLLTGDAFSAERALEIGLVNAVVPHEEL 191 (260)
T ss_pred HHHHcCCccCHHHHHHcCCCCcccCHHHH
Confidence 99999999999999999999999998753
No 3
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-48 Score=314.23 Aligned_cols=188 Identities=26% Similarity=0.333 Sum_probs=168.9
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh------
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK------ 80 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~------ 80 (195)
.++.+.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.....
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06142 4 TYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDG 83 (272)
T ss_pred CcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999998754211
Q ss_pred -cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986 81 -EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR 159 (195)
Q Consensus 81 -~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r 159 (195)
.............+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 163 (272)
T PRK06142 84 LARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPR 163 (272)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHH
Confidence 0111223334455677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cch-HHHHHHhhcCCCCCHHHHHhcCccccccCC-CC
Q 041986 160 LPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLS-AV 194 (195)
Q Consensus 160 ~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~-~~ 194 (195)
++| ..+.+++++|++++|+||+++||||++||+ ++
T Consensus 164 ~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~ 200 (272)
T PRK06142 164 IIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADA 200 (272)
T ss_pred HhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHH
Confidence 999 999999999999999999999999999985 54
No 4
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-48 Score=311.02 Aligned_cols=188 Identities=29% Similarity=0.456 Sum_probs=169.3
Q ss_pred cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHH
Q 041986 8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEEC 87 (195)
Q Consensus 8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~ 87 (195)
++++.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++............
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 35688999999999999999999999999999999999999999999999999999999999999987643222222222
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986 88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE 166 (195)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~ 166 (195)
..+.+..++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT 160 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence 334455667888999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++++|++++|+||+++||||+++|++++
T Consensus 161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l 189 (255)
T PRK07260 161 HLAMTGEALTAEKALEYGFVYRVAESEKL 189 (255)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHhHH
Confidence 99999999999999999999999998753
No 5
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-48 Score=311.17 Aligned_cols=188 Identities=27% Similarity=0.382 Sum_probs=165.4
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
+++.+.++++++|++||||||++.|++|.+++.+|.+++++++ |+++++|||+|.|+.||+|.|++++...........
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (262)
T PRK08140 2 MYETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDL 80 (262)
T ss_pred CCceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhh
Confidence 3557899999999999999999999999999999999999999 999999999999999999999998743211111111
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
...+...+..++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a 160 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHH
Confidence 1122223445778899999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++++|++++|+||+++||||+|||++++
T Consensus 161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 190 (262)
T PRK08140 161 LGLALLGEKLSAEQAEQWGLIWRVVDDAAL 190 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCccEeeChHHH
Confidence 999999999999999999999999998753
No 6
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-49 Score=306.95 Aligned_cols=182 Identities=28% Similarity=0.431 Sum_probs=161.4
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
........++++|+.|+||||+++|+++..++.||.++|..++.|++++++||||.|+.||+|.|++++......+-..
T Consensus 35 ~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~- 113 (290)
T KOG1680|consen 35 PIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD- 113 (290)
T ss_pred cceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc-
Confidence 3345566678899999999999999999999999999999999999999999999999999999999987532211110
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
. .+.+.+..+.+.+||+||++||+|+|||+||+++||+||+++++.|++|+.++|++|.+|++.+|+|++| ++|
T Consensus 114 --~---~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~A 188 (290)
T KOG1680|consen 114 --G---IFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRA 188 (290)
T ss_pred --c---cccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHH
Confidence 0 1222333445899999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++++++|++++|+||+++||||+|||.++
T Consensus 189 le~~ltg~~~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 189 LEMILTGRRLGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred HHHHHhcCcccHHHHHhCCceeEeecchh
Confidence 99999999999999999999999999886
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-48 Score=309.51 Aligned_cols=182 Identities=27% Similarity=0.420 Sum_probs=164.4
Q ss_pred cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHH
Q 041986 8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEEC 87 (195)
Q Consensus 8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~ 87 (195)
++.+.++++++|++||||||++.|++|.+++++|.+++++++.|+++|+|||+|.|+.||+|.|++++..... .+
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~-- 77 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---MD-- 77 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---hH--
Confidence 4568999999999999999999999999999999999999999999999999999999999999998753211 11
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986 88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE 166 (195)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~ 166 (195)
.+...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++.
T Consensus 78 -~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 78 -VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 11223344677889999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++++|++++|+||+++||||+++|++++
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 185 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKL 185 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHH
Confidence 99999999999999999999999998753
No 8
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-48 Score=310.34 Aligned_cols=188 Identities=23% Similarity=0.309 Sum_probs=168.9
Q ss_pred CCcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986 6 SSQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV 84 (195)
Q Consensus 6 ~~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~ 84 (195)
.+++.|.+++ +++|++|+||||++.|++|.+++.+|.++|++++.|+++++|||||.|+.||+|.|++++..... ..
T Consensus 8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~ 85 (268)
T PRK07327 8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMAD--DF 85 (268)
T ss_pred CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccC--cH
Confidence 4677899998 58999999999999999999999999999999999999999999999999999999998754221 11
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986 85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H 163 (195)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~ 163 (195)
...........+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| .
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 165 (268)
T PRK07327 86 EVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMA 165 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHH
Confidence 122233445567888899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++.+++++|++++|+||+++||||+++|++++
T Consensus 166 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 197 (268)
T PRK07327 166 KAKYYLLLCEPVSGEEAERIGLVSLAVDDDEL 197 (268)
T ss_pred HHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence 99999999999999999999999999998753
No 9
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-48 Score=308.58 Aligned_cols=181 Identities=30% Similarity=0.335 Sum_probs=164.2
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
+.|.++++++|++|+||||++.|++|.+++.+|.++++.++ +++++|||||.|+.||+|.|++++..... ....
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~----~~~~ 75 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA----GEGM 75 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc----hhHH
Confidence 46889999999999999999999999999999999999997 78999999999999999999998754211 1112
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
.....+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 33445667888899999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++|++++|+||+++||||++||++++
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l 183 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEA 183 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHH
Confidence 9999999999999999999999998763
No 10
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-48 Score=309.50 Aligned_cols=189 Identities=25% Similarity=0.365 Sum_probs=163.7
Q ss_pred CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986 6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
+.++.+.++++++|++||||||++.|++|.+++++|.++++.++.|+++++|||||.|+.||+|.|++++..........
T Consensus 2 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (263)
T PRK07799 2 EGGPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFK 81 (263)
T ss_pred CCCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999876432111110
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
........+..+ .++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 82 DGSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 000001122223 3467899999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+.+++++|++++|+||+++||||++||++++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 191 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQA 191 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchH
Confidence 9999999999999999999999999998763
No 11
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.9e-48 Score=311.05 Aligned_cols=185 Identities=28% Similarity=0.352 Sum_probs=166.3
Q ss_pred eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHH
Q 041986 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE 89 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 89 (195)
.+.++++++|++|+||+|++.|+++.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.......+......
T Consensus 18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999998743211112222334
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccC-CCchhhHhhhcch-HHHHH
Q 041986 90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHP-DVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p-~~g~~~~l~r~~g-~~a~~ 167 (195)
+.+.+.++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++++|++| ..+++
T Consensus 98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~ 177 (277)
T PRK08258 98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE 177 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence 445566788899999999999999999999999999999999999999999999999995 7788999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++++|++++|+||+++||||++||+++
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~ 204 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEE 204 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHH
Confidence 999999999999999999999999875
No 12
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=307.46 Aligned_cols=182 Identities=24% Similarity=0.330 Sum_probs=164.9
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEEC 87 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~ 87 (195)
..+.++++++|++||||||++ |++|.+++.+|.++++.++.|+++++|||+|.| +.||+|.|++++..... ...
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~----~~~ 77 (258)
T PRK09076 3 IELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK----AVA 77 (258)
T ss_pred eEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh----hhH
Confidence 468899999999999999985 999999999999999999999999999999999 78999999998753211 111
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986 88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE 166 (195)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~ 166 (195)
..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..++
T Consensus 78 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~ 157 (258)
T PRK09076 78 REMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAK 157 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence 233445567888899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++++|++++|+||+++||||+|||++++
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 186 (258)
T PRK09076 158 RMILCGERVDAATALRIGLVEEVVEKGEA 186 (258)
T ss_pred HHHHcCCcCCHHHHHHCCCCceecCchhH
Confidence 99999999999999999999999998753
No 13
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-48 Score=308.16 Aligned_cols=183 Identities=26% Similarity=0.331 Sum_probs=166.4
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
.++.+.++++++|++|+||||++.|++|.+++++|.++++.++.|+++++|||||.|+.||+|.|++++.....+ ..
T Consensus 2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~--~~- 78 (258)
T PRK06190 2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSA--YG- 78 (258)
T ss_pred CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch--hh-
Confidence 456799999999999999999999999999999999999999999999999999999999999999987542111 11
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
. .....+++.++.++|||+||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|++| ..+
T Consensus 79 --~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 79 --A-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred --H-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 1 234456788899999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
.+++++|++++|+||+++||||+++|++++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 185 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDEL 185 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHH
Confidence 999999999999999999999999998753
No 14
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=308.38 Aligned_cols=193 Identities=24% Similarity=0.356 Sum_probs=171.6
Q ss_pred CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhh
Q 041986 1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRML 79 (195)
Q Consensus 1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~ 79 (195)
|+.-.+..+.|.++++++|++|+||||++.|++|.+++++|.++++.++.|+++++|||+|.| +.||+|.|++++....
T Consensus 3 ~~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~ 82 (269)
T PRK06127 3 MSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR 82 (269)
T ss_pred ccccCCCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc
Confidence 344445667899999999999999999999999999999999999999999999999999998 7999999999875421
Q ss_pred hcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986 80 KEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR 159 (195)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r 159 (195)
.. ......+......++.++..+||||||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|
T Consensus 83 ~~--~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 160 (269)
T PRK06127 83 SD--AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVD 160 (269)
T ss_pred cc--hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHH
Confidence 11 1112234445566788899999999999999999999999999999999999999999999999999999999999
Q ss_pred cch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 160 LPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 160 ~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++| .++.+++++|++++|+||+++||||+|||++++
T Consensus 161 ~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 197 (269)
T PRK06127 161 LVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDL 197 (269)
T ss_pred HhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHH
Confidence 999 899999999999999999999999999998753
No 15
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.5e-48 Score=308.46 Aligned_cols=186 Identities=28% Similarity=0.421 Sum_probs=164.1
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
+++.+.++++++|++||||+|++.|++|.+++++|.++++.++.|+++|+|||||.|+.||+|.|++++......... .
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-~ 80 (262)
T PRK05995 2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD-E 80 (262)
T ss_pred CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch-h
Confidence 356799999999999999999999999999999999999999999999999999999999999999987542211111 1
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
.......+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. ++++++| ..+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a 159 (262)
T PRK05995 81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAA 159 (262)
T ss_pred hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHH
Confidence 11223445678888999999999999999999999999999999999999999999999999988765 4789999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
.+++++|++++|+||+++||||++||+++
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (262)
T PRK05995 160 RRYFLTAERFDAAEALRLGLVHEVVPAEA 188 (262)
T ss_pred HHHHHcCCccCHHHHHHcCCCCeecCHHH
Confidence 99999999999999999999999999765
No 16
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=9.6e-48 Score=307.23 Aligned_cols=180 Identities=26% Similarity=0.416 Sum_probs=164.1
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
+.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++..... . .
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~---~ 75 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A---A 75 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h---h
Confidence 467889999999999999999999999999999999999999999999999999999999999998753211 1 1
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
.+.....++++++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++.+
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 12233456778899999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++++|++++|+||+++||||++||+++
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~ 182 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPEL 182 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHH
Confidence 999999999999999999999999875
No 17
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=6.3e-48 Score=309.74 Aligned_cols=188 Identities=22% Similarity=0.337 Sum_probs=164.1
Q ss_pred CCcceEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986 6 SSQIHVLVEER-ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV 84 (195)
Q Consensus 6 ~~~~~v~~~~~-~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~ 84 (195)
++|+++.++++ ++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++...... +.
T Consensus 2 ~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~ 80 (265)
T PRK05674 2 SDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADL-DY 80 (265)
T ss_pred CCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccc-cc
Confidence 35778999985 78999999999999999999999999999999999999999999999999999999987532111 11
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986 85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H 163 (195)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~ 163 (195)
....+....+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. ++++++| .
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~ 159 (265)
T PRK05674 81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGER 159 (265)
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHH
Confidence 1111222345567888999999999999999999999999999999999999999999999999987665 4888899 9
Q ss_pred HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++++++|++++|+||+++|||++|||++++
T Consensus 160 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 191 (265)
T PRK05674 160 AARRYALTAERFDGRRARELGLLAESYPAAEL 191 (265)
T ss_pred HHHHHHHhCcccCHHHHHHCCCcceecCHHHH
Confidence 99999999999999999999999999997653
No 18
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=9.1e-48 Score=307.46 Aligned_cols=183 Identities=20% Similarity=0.274 Sum_probs=164.0
Q ss_pred cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHH
Q 041986 8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
|++|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++.... + ..
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~-~-~~-- 76 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGY-D-GR-- 76 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccc-c-ch--
Confidence 45688999999999999999999999999999999999999999999999999999 7999999999874211 1 11
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
..+......++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++++|++| .++
T Consensus 77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 77 -GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred -hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 112233456788899999999999999999999999999999999999999999999999988888899999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++++|++++|+||+++||||++||++++
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l 185 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQL 185 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHH
Confidence 999999999999999999999999998753
No 19
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.9e-47 Score=306.34 Aligned_cols=184 Identities=29% Similarity=0.453 Sum_probs=167.3
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
++..+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++.... ..
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~----~~ 77 (260)
T PRK05809 2 ELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLN----EE 77 (260)
T ss_pred CcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccC----hH
Confidence 456789999999999999999999999999999999999999999999999999999 9999999999875421 11
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
....+.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 12233344566888999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
+.+++++|++++|+||+++||||+++|+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 187 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEK 187 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHH
Confidence 999999999999999999999999999875
No 20
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=307.37 Aligned_cols=186 Identities=26% Similarity=0.343 Sum_probs=167.4
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
..+.+.++++++|++|+||||++.|++|.+++++|.+++++++.|+++++|||||.| ++||+|.|++++...... +
T Consensus 6 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~---~ 82 (262)
T PRK06144 6 STDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTA---E 82 (262)
T ss_pred CCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccch---h
Confidence 345688999999999999999999999999999999999999999999999999999 799999999987542111 1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCccc-ccccCCCchhhHhhhcch-H
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVL-IGFHPDVGSSYYLSRLPG-H 163 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~-~G~~p~~g~~~~l~r~~g-~ 163 (195)
....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||++ +|++|++|+++++++++| .
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~ 162 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA 162 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence 12234445667888899999999999999999999999999999999999999999996 999999999999999999 8
Q ss_pred HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
.+.+++++|++++|+||+++||||+|+|++++
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 194 (262)
T PRK06144 163 RVKDMLFTARLLEAEEALAAGLVNEVVEDAAL 194 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCeecCHHHH
Confidence 99999999999999999999999999998753
No 21
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-47 Score=306.91 Aligned_cols=183 Identities=28% Similarity=0.407 Sum_probs=165.8
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
+++.++++++|++||||+|++ |++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++...... ....
T Consensus 2 ~~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~---~~~~ 77 (257)
T PRK07658 2 KFLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEA---EQAT 77 (257)
T ss_pred ceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCch---hhHH
Confidence 378899999999999999985 999999999999999999999999999999999999999999987532211 1122
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
.+......+++++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++.+
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T PRK07658 78 ELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALE 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHH
Confidence 34455667888999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++|++++|+||+++||||++||++++
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l 185 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETL 185 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHH
Confidence 9999999999999999999999998763
No 22
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-47 Score=306.38 Aligned_cols=182 Identities=26% Similarity=0.421 Sum_probs=165.1
Q ss_pred CcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986 7 SQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 7 ~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
..+.+.+++ +++|++|+||||++.|++|.+++.+|.++++.+++|+++|+|||||.|+.||+|.|++++.... ..
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~- 80 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAG---AI- 80 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccc---hh-
Confidence 345677887 7899999999999999999999999999999999999999999999999999999999875321 11
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
..+.....+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus 81 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 158 (261)
T PRK08138 81 --EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK 158 (261)
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence 123344566788899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
+.+++++|++++++||+++||||++||+++
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (261)
T PRK08138 159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQ 188 (261)
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEecCchH
Confidence 999999999999999999999999999876
No 23
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-47 Score=306.21 Aligned_cols=185 Identities=24% Similarity=0.391 Sum_probs=167.9
Q ss_pred eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHH
Q 041986 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE 89 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 89 (195)
++.++++++|++|+||+|++.|++|.+++.+|.+++++++.|+++|+|||+|.|+.||+|.|++++...... .......
T Consensus 4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~-~~~~~~~ 82 (260)
T PRK07511 4 ELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAK-PPSVQAA 82 (260)
T ss_pred eeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccc-cchhHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999987542111 1122234
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986 90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL 168 (195)
Q Consensus 90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l 168 (195)
+.....+++.++.++|||+||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.++
T Consensus 83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l 162 (260)
T PRK07511 83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATEL 162 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++|++++++||+++||||++||++++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv~~~~~ 189 (260)
T PRK07511 163 LLEGKPISAERLHALGVVNRLAEPGQA 189 (260)
T ss_pred HHhCCCCCHHHHHHcCCccEeeCchHH
Confidence 999999999999999999999998753
No 24
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=306.38 Aligned_cols=183 Identities=26% Similarity=0.412 Sum_probs=163.9
Q ss_pred cceEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986 8 QIHVLVE-ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 8 ~~~v~~~-~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
+.++.++ .+++|++||||||++.|++|.+++++|.++++.++.|+++|+|||||.| +.||+|.|++++..... .
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~----~ 80 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ----A 80 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh----h
Confidence 3457777 4689999999999999999999999999999999999999999999999 79999999998754211 1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
....+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|+++++++++| .+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 22344456677888999999999999999999999999999999999999999999999998 77888999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+.+++++|++++|+||+++||||++||++++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 190 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAEL 190 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHH
Confidence 9999999999999999999999999998753
No 25
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.5e-47 Score=306.39 Aligned_cols=185 Identities=24% Similarity=0.348 Sum_probs=166.2
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
..+.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.... ....
T Consensus 9 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~ 85 (266)
T PRK08139 9 EAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAAR---GLAY 85 (266)
T ss_pred cCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhccc---chhH
Confidence 4557899999999999999999999999999999999999999999999999999999999999999875321 1122
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
.....+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ .++++|++| ..+
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 234455667788899999999999999999999999999999999999999999999999998764 578999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
.+++++|++++|+||+++||||+|+|++++
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 194 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADAL 194 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHH
Confidence 999999999999999999999999998764
No 26
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-47 Score=307.44 Aligned_cols=185 Identities=24% Similarity=0.388 Sum_probs=164.6
Q ss_pred eEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhc--ccHHH
Q 041986 10 HVLVEERANSRTVILNRPHVLNALNT-SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE--GRVEE 86 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~N~~~~-~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~--~~~~~ 86 (195)
.+.++++++|++||||||++.|++|. +++.+|.+++++++.|+++++|||+|.|+.||+|.|++++...... .....
T Consensus 4 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (266)
T PRK09245 4 FLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPAD 83 (266)
T ss_pred ceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchh
Confidence 58899999999999999999999995 9999999999999999999999999999999999999987542210 01111
Q ss_pred -HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 87 -CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 87 -~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
...+...+.+++.++.++|||+||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 163 (266)
T PRK09245 84 IRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMAR 163 (266)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHH
Confidence 1122233456788899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
+.+++++|++++|+||+++||||+++|+++
T Consensus 164 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK09245 164 AAEMAFTGDAIDAATALEWGLVSRVVPADQ 193 (266)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcceecCHHH
Confidence 999999999999999999999999999875
No 27
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=307.02 Aligned_cols=180 Identities=24% Similarity=0.286 Sum_probs=159.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (195)
|.++++++|++||||||++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.....+... .+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~----~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGF----PF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchh----hh
Confidence 46788999999999999999999999999999999999999999999999999999999999987542211111 11
Q ss_pred HHH-HHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986 91 FRT-LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL 168 (195)
Q Consensus 91 ~~~-~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l 168 (195)
... ...+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.++
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 111 122233578899999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCCCCHHHHHhcCccccccCCCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
+++|++++|+||+++||||+++|+++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~ 182 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGE 182 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHH
Confidence 99999999999999999999999875
No 28
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-47 Score=309.06 Aligned_cols=190 Identities=25% Similarity=0.360 Sum_probs=166.9
Q ss_pred CCcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc--
Q 041986 6 SSQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG-- 82 (195)
Q Consensus 6 ~~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~-- 82 (195)
++++.|.+++ +++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++.......
T Consensus 6 ~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 85 (276)
T PRK05864 6 STMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGL 85 (276)
T ss_pred CCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccc
Confidence 4667788887 8899999999999999999999999999999999999999999999999999999999864211100
Q ss_pred -cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccC-CCchhhHhhhc
Q 041986 83 -RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHP-DVGSSYYLSRL 160 (195)
Q Consensus 83 -~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p-~~g~~~~l~r~ 160 (195)
.............+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~ 165 (276)
T PRK05864 86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA 165 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence 1111122334556678888999999999999999999999999999999999999999999999997 78889999999
Q ss_pred ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+| ..+.+++++|++++|+||+++||||+++|++++
T Consensus 166 vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 201 (276)
T PRK05864 166 IGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQL 201 (276)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHH
Confidence 99 899999999999999999999999999998753
No 29
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-47 Score=304.92 Aligned_cols=182 Identities=25% Similarity=0.350 Sum_probs=163.9
Q ss_pred ceEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986 9 IHVLVEERAN---SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 9 ~~v~~~~~~~---v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
+.|.++++++ |++|+||||++.|++|.+++++|.++++.++.|+++++|||+|.|+.||+|.|++++...... ..
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~-~~- 80 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG-GT- 80 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc-ch-
Confidence 3688888874 999999999999999999999999999999999999999999999999999999987542111 11
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
.+.....+++.++.++||||||+|||+|+|||++++++||+||++++++|++||+++|++|++|+++++++++| .+
T Consensus 81 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 81 ---SFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred ---hhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 12234456788899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+.+++++|++++|+||+++||||++||++++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAV 188 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHH
Confidence 9999999999999999999999999998753
No 30
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.7e-47 Score=306.39 Aligned_cols=184 Identities=21% Similarity=0.307 Sum_probs=162.8
Q ss_pred ceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHH
Q 041986 9 IHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 9 ~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
+.+.+++ +++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++....... ...
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYID-DSG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccc-hhh
Confidence 4578888 899999999999999999999999999999999999999999999999 7999999998764221111 110
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
... .....+++.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++
T Consensus 81 ~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 VHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred HHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 011 12345777889999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++++|++++|+||+++||||+|||++++
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADL 188 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHH
Confidence 999999999999999999999999998753
No 31
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-47 Score=311.50 Aligned_cols=187 Identities=24% Similarity=0.358 Sum_probs=165.8
Q ss_pred cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh-c-----
Q 041986 8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK-E----- 81 (195)
Q Consensus 8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~-~----- 81 (195)
++.|.++++++|++|+||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++..... .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999998643110 0
Q ss_pred ------ccHH-HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchh
Q 041986 82 ------GRVE-ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSS 154 (195)
Q Consensus 82 ------~~~~-~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~ 154 (195)
.... ....+.+...+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0000 111223334567888999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 155 YYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 155 ~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++++|++| .++.+++++|++++|+||+++||||+|||+++
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~ 203 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDE 203 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHH
Confidence 99999999 89999999999999999999999999999875
No 32
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=2e-47 Score=305.66 Aligned_cols=183 Identities=26% Similarity=0.360 Sum_probs=161.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (195)
|.++++++|++||||||++.|++|.+++.+|.++++.++.|+ +++|||||.|+.||+|.|++++...... ..+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGG-APDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcccc-chhHHHHH
Confidence 467889999999999999999999999999999999999988 9999999999999999999987532111 11111112
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986 91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG 169 (195)
Q Consensus 91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~ 169 (195)
...+..+++++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+++++
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 223345778899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCCCHHHHHhcCccccccCCCCC
Q 041986 170 LTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++|++++|+||+++||||+++|++++
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l 184 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAAL 184 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHH
Confidence 99999999999999999999998753
No 33
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-47 Score=306.99 Aligned_cols=188 Identities=26% Similarity=0.363 Sum_probs=167.3
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCceeccccchhHHHhhhcc--c
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNS-GVDFVVIKGNGRSFCAGGDVVGAYRMLKEG--R 83 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~-~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~--~ 83 (195)
+++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+ ++++|||||.|+.||+|.|++++....... .
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 4667999999999999999999999999999999999999999875 499999999999999999999875422111 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986 84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG- 162 (195)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g- 162 (195)
......+...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 0111233445667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
..+++++++|++++|+||+++|||++++|+++
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAE 193 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhH
Confidence 88999999999999999999999999999875
No 34
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=3.5e-47 Score=307.01 Aligned_cols=185 Identities=25% Similarity=0.383 Sum_probs=163.4
Q ss_pred eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhc---cc---
Q 041986 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE---GR--- 83 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~---~~--- 83 (195)
.+..+.+++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++...... .+
T Consensus 9 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PLN02664 9 IIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR 88 (275)
T ss_pred EEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchh
Confidence 345556899999999999999999999999999999999999999999999999999999999987542110 00
Q ss_pred -HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986 84 -VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG 162 (195)
Q Consensus 84 -~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g 162 (195)
......+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|++|+++++++++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 168 (275)
T PLN02664 89 SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVG 168 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhC
Confidence 1122233445567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhhcCCCCCHHHHHhcCccccccCC-CC
Q 041986 163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLS-AV 194 (195)
Q Consensus 163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~-~~ 194 (195)
.++.+++++|++++|+||+++||||++||+ ++
T Consensus 169 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~ 202 (275)
T PLN02664 169 YGNAMELALTGRRFSGSEAKELGLVSRVFGSKED 202 (275)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhH
Confidence 999999999999999999999999999985 54
No 35
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-47 Score=304.82 Aligned_cols=183 Identities=25% Similarity=0.434 Sum_probs=166.5
Q ss_pred ceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHH
Q 041986 9 IHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 9 ~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
++|.+++ +++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.| +.||+|.|++++.... ...
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~----~~~ 78 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMN----EEQ 78 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCC----hhh
Confidence 4788886 789999999999999999999999999999999999999999999999 5999999999875321 112
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
...+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK07657 79 VRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 2344456677888999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
.+++++|++++++||+++||||+++|++++
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (260)
T PRK07657 159 KELIYTGRRISAQEAKEIGLVEFVVPAHLL 188 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCeecCHHHH
Confidence 999999999999999999999999998763
No 36
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-47 Score=305.28 Aligned_cols=184 Identities=31% Similarity=0.443 Sum_probs=168.2
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
....+.++++++|++|+||+|++.|++|.+++++|.+++++++.|+++++|||+|.|+.||+|.|++++.......
T Consensus 3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---- 78 (259)
T PRK06688 3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP---- 78 (259)
T ss_pred CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch----
Confidence 3446899999999999999999899999999999999999999999999999999999999999999876432211
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
..+...+.++++++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 157 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARA 157 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHH
Confidence 234456677888999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
.+++++|++++|+||+++||||+++|++++
T Consensus 158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l 187 (259)
T PRK06688 158 AEMLLLGEPLSAEEALRIGLVNRVVPAAEL 187 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHH
Confidence 999999999999999999999999998653
No 37
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=5.4e-47 Score=303.33 Aligned_cols=183 Identities=31% Similarity=0.474 Sum_probs=167.9
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
.+..+.++.+++|++||||+|++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++.+.. . .+...
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-~--~~~~~ 79 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-P--EDGNA 79 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-c--cchhH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999875 1 11111
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
...+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 1255566677999999999999999999999999999999999999999999999999999998899999999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
.+++++|++++++||+++|||++++++
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCC
Confidence 999999999999999999999999985
No 38
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-47 Score=306.45 Aligned_cols=188 Identities=26% Similarity=0.295 Sum_probs=165.0
Q ss_pred CcceEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH-
Q 041986 7 SQIHVLVEERA-NSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV- 84 (195)
Q Consensus 7 ~~~~v~~~~~~-~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~- 84 (195)
.++.|.+++++ +|++|+||||++.|++|.+++++|.++++.++.|+++++|||+|.|+.||+|.|++++.........
T Consensus 3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06210 3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR 82 (272)
T ss_pred CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence 45679999998 9999999999999999999999999999999999999999999999999999999987542211000
Q ss_pred -H---HH-HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986 85 -E---EC-KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR 159 (195)
Q Consensus 85 -~---~~-~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r 159 (195)
. .. ......+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 162 (272)
T PRK06210 83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPR 162 (272)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHh
Confidence 0 00 001112345677888999999999999999999999999999999999999999999999999999999999
Q ss_pred cch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 160 LPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 160 ~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++| ..+++++++|++++|+||+++||||+++|+++
T Consensus 163 ~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 198 (272)
T PRK06210 163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE 198 (272)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence 999 89999999999999999999999999999865
No 39
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4e-47 Score=297.63 Aligned_cols=183 Identities=26% Similarity=0.339 Sum_probs=162.9
Q ss_pred cceEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc
Q 041986 8 QIHVLVEER-----ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG 82 (195)
Q Consensus 8 ~~~v~~~~~-----~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~ 82 (195)
++.|.++.. ++|++|+||||++ |++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-- 78 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-- 78 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh--
Confidence 345555554 8999999999984 99999999999999999999999999999999999999999998754221
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986 83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG 162 (195)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g 162 (195)
.......+..+++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+++|++|
T Consensus 79 --~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig 156 (222)
T PRK05869 79 --QEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAG 156 (222)
T ss_pred --hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhC
Confidence 111223345567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
..+++++++|++++|+||+++||||+++|++++
T Consensus 157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 190 (222)
T PRK05869 157 PSRAKELVFSGRFFDAEEALALGLIDEMVAPDDV 190 (222)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHH
Confidence 899999999999999999999999999998763
No 40
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.5e-47 Score=302.86 Aligned_cols=185 Identities=26% Similarity=0.379 Sum_probs=162.0
Q ss_pred cceEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 8 QIHVLVEER-ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 8 ~~~v~~~~~-~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
++.+.++++ ++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++........ ..
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 81 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR-AT 81 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccch-hh
Confidence 556888885 6899999999999999999999999999999999999999999999999999999998753221111 11
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
.......+..+++++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++ +| ..+
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a 160 (262)
T PRK07468 82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHH
Confidence 1122334566788899999999999999999999999999999999999999999999999999998886655 88 999
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
.+|+++|++++|+||+++||||+++|+++
T Consensus 161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~ 189 (262)
T PRK07468 161 RRVFMSARLFDAEEAVRLGLLSRVVPAER 189 (262)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999765
No 41
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-47 Score=302.20 Aligned_cols=178 Identities=26% Similarity=0.412 Sum_probs=161.7
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
+.+.++++++|++|+||||++.|++|.+++++|.++++.++.|+++++|||||.|+.||+|.|++++.....+.. .
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~----~ 78 (249)
T PRK05870 3 DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPA----E 78 (249)
T ss_pred ccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccch----H
Confidence 458889999999999999999999999999999999999999999999999999999999999998764322111 1
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
+......+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+++
T Consensus 79 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 158 (249)
T PRK05870 79 DGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARA 158 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHH
Confidence 22344455677888999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCcccccc
Q 041986 168 LGLTGATLSGEEMLFCGLATHYS 190 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv 190 (195)
++++|++++|+||+++||||++|
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH
Confidence 99999999999999999999998
No 42
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-46 Score=301.98 Aligned_cols=182 Identities=25% Similarity=0.343 Sum_probs=161.0
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
.++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++....... .
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~--~ 79 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG--W 79 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch--h
Confidence 456789999999999999999999999999999999999999999999999999998 7999999999865322111 0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
. ...+..+. .+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus 80 ~----~~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 80 P----ESGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h----hHHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0 11122233 345899999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+.+++++|++++|+||+++||||++||++++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l 185 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGEL 185 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHH
Confidence 9999999999999999999999999998753
No 43
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=4.6e-47 Score=301.78 Aligned_cols=179 Identities=35% Similarity=0.566 Sum_probs=168.9
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHH
Q 041986 12 LVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELF 91 (195)
Q Consensus 12 ~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~ 91 (195)
.++++++|++|+||+|++.|++|.+++.+|.++|+.++.|+++++||++|.++.||+|.|++++... +......+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 3789999999999999889999999999999999999999999999999999999999999998876 334556777
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhh
Q 041986 92 RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGL 170 (195)
Q Consensus 92 ~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l 170 (195)
+.+..++.++..+||||||+|||+|+|+|++++++||+||+++++.|++||+++|++|++|++++++|++| ..+.++++
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCCCHHHHHhcCccccccCCCC
Q 041986 171 TGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 171 ~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
+|++++|+||+++||||+++|+++
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGG
T ss_pred ccccchhHHHHhhcceeEEcCchh
Confidence 999999999999999999999876
No 44
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.3e-46 Score=315.11 Aligned_cols=189 Identities=56% Similarity=1.011 Sum_probs=168.3
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
..+.|.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|.|+.||+|+|++++...........
T Consensus 35 ~~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~ 114 (401)
T PLN02157 35 LDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDA 114 (401)
T ss_pred CCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999998764322111122
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE 166 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~ 166 (195)
...++.....+..++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|..+.
T Consensus 115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~ 194 (401)
T PLN02157 115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGE 194 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHH
Confidence 23344444456778899999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++||++++|+||+++||++++||++++
T Consensus 195 ~L~LTG~~i~A~eA~~~GLv~~vVp~~~l 223 (401)
T PLN02157 195 YLGLTGLKLSGAEMLACGLATHYIRSEEI 223 (401)
T ss_pred HHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence 99999999999999999999999998763
No 45
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-46 Score=300.85 Aligned_cols=179 Identities=26% Similarity=0.365 Sum_probs=159.1
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++..... ...
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~-- 77 (254)
T PRK08252 3 DEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGER---PSI-- 77 (254)
T ss_pred ceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccc---hhh--
Confidence 468899999999999999999999999999999999999999999999999999999999999998764211 111
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
....+..+.. ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+++
T Consensus 78 -~~~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 154 (254)
T PRK08252 78 -PGRGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAME 154 (254)
T ss_pred -hHHHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHH
Confidence 1111222221 4799999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++|++++|+||+++||||+|||++++
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l 182 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQA 182 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchH
Confidence 9999999999999999999999998753
No 46
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=9.2e-47 Score=304.18 Aligned_cols=186 Identities=20% Similarity=0.324 Sum_probs=164.2
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
+++.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++..... ....
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGY-VDDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccc-cchh
Confidence 456789999999999999999999999999999999999999999999999999999 69999999998642111 0111
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
..... ...++++.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111 2335677888999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+.+++++|++++|+||+++||||+|||++++
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l 198 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADL 198 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHH
Confidence 9999999999999999999999999998753
No 47
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.2e-46 Score=302.20 Aligned_cols=181 Identities=28% Similarity=0.431 Sum_probs=162.3
Q ss_pred CcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986 7 SQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 7 ~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
+.+.|.+++ +++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++...... ..
T Consensus 7 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~- 84 (265)
T PLN02888 7 SENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKG-DV- 84 (265)
T ss_pred CCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccc-hh-
Confidence 455777885 789999999999999999999999999999999999999999999999999999999986532111 11
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL 164 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~ 164 (195)
. ....+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..
T Consensus 85 --~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 159 (265)
T PLN02888 85 --K---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR 159 (265)
T ss_pred --h---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence 0 11234666788999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
+++++++|++++|+||+++||||++||+++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 189 (265)
T PLN02888 160 AREVSLTAMPLTAETAERWGLVNHVVEESE 189 (265)
T ss_pred HHHHHHhCCccCHHHHHHcCCccEeeChHH
Confidence 999999999999999999999999999875
No 48
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1e-46 Score=302.11 Aligned_cols=182 Identities=18% Similarity=0.281 Sum_probs=164.3
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-C-CceeccccchhHHHhhhcccH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN-G-RSFCAGGDVVGAYRMLKEGRV 84 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~-g-~~F~~G~dl~~~~~~~~~~~~ 84 (195)
+++.+.++++++|++||||||++.|++|.+++.+|.+++++++.|+ +++|||||. + +.||+|.|++++..... +.
T Consensus 2 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~--~~ 78 (261)
T PRK11423 2 SMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR--DP 78 (261)
T ss_pred CccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc--cH
Confidence 4557999999999999999999999999999999999999999887 999999996 3 89999999998743211 11
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986 85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H 163 (195)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~ 163 (195)
..+...+.++++++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| .
T Consensus 79 ---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 79 ---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred ---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 123345567888999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
.+.+++++|++++|+||+++||||+|||+++
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~ 186 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEE 186 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHH
Confidence 9999999999999999999999999999875
No 49
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-46 Score=301.76 Aligned_cols=183 Identities=30% Similarity=0.420 Sum_probs=165.8
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
+++++.++++++|++|+||+|++.|++|.+++.+|.++++.+ .|+++++||++|.|+.||+|.|++++...... ..
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~---~~ 79 (260)
T PRK07659 4 KMESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDE---SK 79 (260)
T ss_pred CCceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCc---hh
Confidence 456799999999999999999999999999999999999999 57899999999999999999999987542211 12
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
...+...+++++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a 159 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKA 159 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHH
Confidence 2344556677888999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++++++|++++|+||+++||||++| +++
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv-~~~ 187 (260)
T PRK07659 160 KQIIWEGKKLSATEALDLGLIDEVI-GGD 187 (260)
T ss_pred HHHHHhCCccCHHHHHHcCChHHHh-hhH
Confidence 9999999999999999999999999 543
No 50
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.6e-46 Score=299.42 Aligned_cols=176 Identities=25% Similarity=0.427 Sum_probs=160.3
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986 16 RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTL 94 (195)
Q Consensus 16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~ 94 (195)
+++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.+ +.||+|.|++++.... ......+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~----~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMS----PSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccC----hHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999985 8999999999875321 11223445556
Q ss_pred HHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCC
Q 041986 95 YSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGA 173 (195)
Q Consensus 95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~ 173 (195)
..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.+++++|+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 67888899999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred CCCHHHHHhcCccccccCCCCC
Q 041986 174 TLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 174 ~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++++||+++||||++||++++
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~ 179 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEA 179 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHH
Confidence 9999999999999999998763
No 51
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-46 Score=300.21 Aligned_cols=184 Identities=28% Similarity=0.354 Sum_probs=163.4
Q ss_pred cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH-
Q 041986 8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE- 86 (195)
Q Consensus 8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~- 86 (195)
++.+.++++++|++||||||++.|++|.+++++|.++++.++.|+++++|||+|.|+.||+|.|++++...... ....
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~~ 80 (262)
T PRK07509 2 MDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGN-AVKLL 80 (262)
T ss_pred CceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccch-hhhhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999987542111 1111
Q ss_pred ---HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986 87 ---CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG- 162 (195)
Q Consensus 87 ---~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g- 162 (195)
.......+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 160 (262)
T PRK07509 81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRK 160 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCH
Confidence 1111223455677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHhcCccccccCC
Q 041986 163 HLGEYLGLTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
..+.+++++|++++|+||+++||||+++++
T Consensus 161 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 161 DVARELTYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence 899999999999999999999999999964
No 52
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.8e-46 Score=297.74 Aligned_cols=182 Identities=20% Similarity=0.289 Sum_probs=165.6
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
.++.+.++++++|++|+||+|++.|++|.+++.+|.+++++++.|+++|+|||||.|+.||+|.|++++...... .
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~--~-- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTG--K-- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccch--h--
Confidence 466788999999999999999999999999999999999999999999999999999999999999987542211 1
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
..+. . .+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+
T Consensus 79 -~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 -GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred -hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1111 1 46788899999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
.+++++|++++++||+++|||++|+|++++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l 185 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEV 185 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHH
Confidence 999999999999999999999999998764
No 53
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-46 Score=300.28 Aligned_cols=181 Identities=29% Similarity=0.367 Sum_probs=159.2
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
+.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++..... ... .
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~---~ 78 (254)
T PRK08259 3 MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL---H 78 (254)
T ss_pred ceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh---h
Confidence 358899999999999999999999999999999999999999999999999999999999999998653211 110 0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
.. ....+...+..+|||||++|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++++|++| ..+.+
T Consensus 79 ~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 156 (254)
T PRK08259 79 PS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMD 156 (254)
T ss_pred hh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 10 0111222334799999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++|++++|+||+++||||+|||++++
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l 184 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQA 184 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHH
Confidence 9999999999999999999999998764
No 54
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=2.5e-46 Score=312.35 Aligned_cols=195 Identities=51% Similarity=0.898 Sum_probs=171.6
Q ss_pred CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh
Q 041986 1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80 (195)
Q Consensus 1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~ 80 (195)
|.-++++...|.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|.|+.||+|+|++++.....
T Consensus 1 ~~~~~~~~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~ 80 (381)
T PLN02988 1 MAVEMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIE 80 (381)
T ss_pred CccccccCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhc
Confidence 56667777789999999999999999999999999999999999999999999999999999999999999998754322
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986 81 EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL 160 (195)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~ 160 (195)
.........+++....+..++.++|||+||++||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|+
T Consensus 81 ~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl 160 (381)
T PLN02988 81 QGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRL 160 (381)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHH
Confidence 22111122333333345667889999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 161 PGHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 161 ~g~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+|..+.++++||++++|+||+++||++++||++++
T Consensus 161 ~G~~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l 195 (381)
T PLN02988 161 PGFFGEYVGLTGARLDGAEMLACGLATHFVPSTRL 195 (381)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHcCCceEecCHhHH
Confidence 99778999999999999999999999999998753
No 55
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=2.2e-46 Score=309.97 Aligned_cols=186 Identities=47% Similarity=0.823 Sum_probs=165.2
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEEC 87 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~ 87 (195)
+.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| +.||+|.|++++............
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3688999999999999999999999999999999999999999999999999999 999999999987543211111111
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHH
Q 041986 88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY 167 (195)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~ 167 (195)
..+.....+++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 12333444677889999999999999999999999999999999999999999999999999999999999997788999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++++|++++|+||+++|||++++|+++
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~ 189 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSAD 189 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHH
Confidence 999999999999999999999999875
No 56
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=3.9e-46 Score=298.87 Aligned_cols=180 Identities=21% Similarity=0.363 Sum_probs=160.9
Q ss_pred eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHH
Q 041986 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
.+.++++++|++||||||+ .|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++...... ..
T Consensus 4 ~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~-~~---- 77 (261)
T PRK03580 4 SLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP-DA---- 77 (261)
T ss_pred eEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcc-hh----
Confidence 5889999999999999996 6999999999999999999999999999999999 799999999987542211 11
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
.+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+.+
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~ 157 (261)
T PRK03580 78 DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANE 157 (261)
T ss_pred hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 11112234567888999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++|++++|+||+++||||+++|++++
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l 185 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAEL 185 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHH
Confidence 9999999999999999999999998763
No 57
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-46 Score=297.10 Aligned_cols=185 Identities=26% Similarity=0.328 Sum_probs=164.9
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
..+.+.++++++|++|+||+|++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++...... ..+.
T Consensus 4 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~ 82 (260)
T PRK07827 4 VDTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGD-PYDA 82 (260)
T ss_pred CCcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccC-chhH
Confidence 345788999999999999999999999999999999999999999999999999999999999999987542111 1111
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE 166 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~ 166 (195)
...+...+.++++++..+||||||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++++++++..+.
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~ 162 (260)
T PRK07827 83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAA 162 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHH
Confidence 22344566778889999999999999999999999999999999999999999999999999999999999998778899
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
+++++|++++|+||+++||||+++++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~~ 188 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAADD 188 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchHH
Confidence 99999999999999999999999753
No 58
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-46 Score=296.94 Aligned_cols=182 Identities=25% Similarity=0.403 Sum_probs=161.8
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
.++.|.++++++|++||||||+ .|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++...... ...
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~--~~~ 78 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKG--PGD 78 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCC--chh
Confidence 3567899999999999999998 6999999999999999999999999999999999999999999987542111 112
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
.........+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+. |+.++++|++| ..+
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 22334456678888999999999999999999999999999999999999999999999997 45778999999 899
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
.+++++|++++|+||+++||||++||+++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~ 184 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEE 184 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999875
No 59
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.2e-45 Score=294.30 Aligned_cols=174 Identities=22% Similarity=0.364 Sum_probs=157.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (195)
|.++++++|++||||+|+ .|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|+.++... .....
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~-------~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD-------QCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch-------hHHHH
Confidence 778899999999999997 6999999999999999999999999999999999999999999875311 11223
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986 91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG 169 (195)
Q Consensus 91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~ 169 (195)
.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++++|++| ..+++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH
Confidence 344566888899999999999999999999999999999999999999999999999987 46789999999 8999999
Q ss_pred hcCCCCCHHHHHhcCccccccCCC
Q 041986 170 LTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
++|++++|+||+++|||++++|++
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~ 177 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDP 177 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcH
Confidence 999999999999999999999864
No 60
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.6e-45 Score=297.54 Aligned_cols=185 Identities=22% Similarity=0.286 Sum_probs=157.4
Q ss_pred eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeC-CCceeccccchhHHHhhhccc
Q 041986 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWEN-----NSGVDFVVIKGN-GRSFCAGGDVVGAYRMLKEGR 83 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~-----~~~~~~vvl~~~-g~~F~~G~dl~~~~~~~~~~~ 83 (195)
.|.++++++|++|+|| |++.|++|.+++.+|.+++++++. |+++++|||||. |+.||+|.|++++.......+
T Consensus 18 ~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 18 RVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 5666678999999996 888999999999999999999998 889999999999 699999999998753211111
Q ss_pred HHHHHHHHHHHHHHHHHHh---hCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986 84 VEECKELFRTLYSFVYLVA---TYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL 160 (195)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~---~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~ 160 (195)
......+.+...+.+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~ 176 (287)
T PRK08788 97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR 176 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH
Confidence 1111122222223333333 7999999999999999999999999999999999999999999999999999999999
Q ss_pred ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+| .++++++++|++++|+||+++||||+++|++++
T Consensus 177 vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el 212 (287)
T PRK08788 177 VGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQG 212 (287)
T ss_pred hhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHH
Confidence 99 999999999999999999999999999998763
No 61
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-45 Score=292.45 Aligned_cols=171 Identities=24% Similarity=0.369 Sum_probs=156.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (195)
+.++++++|++||||||++.|++|.+++.+|.+++++++.+ ++++|||||.|+.||+|.|+++... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 56888999999999999999999999999999999999864 8999999999999999999985211 1123
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986 91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG 169 (195)
Q Consensus 91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~ 169 (195)
.....++++++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+++++
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 344566788899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCCCHHHHHhcCccccccC
Q 041986 170 LTGATLSGEEMLFCGLATHYSL 191 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~vv~ 191 (195)
++|++++|+||+++||||+|++
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC
Confidence 9999999999999999999975
No 62
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.5e-45 Score=308.52 Aligned_cols=187 Identities=49% Similarity=0.848 Sum_probs=166.2
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
.++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|+.||+|.|++++....... ..
T Consensus 9 ~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~--~~ 86 (379)
T PLN02874 9 AEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESD--DS 86 (379)
T ss_pred CCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccc--hH
Confidence 4557889999999999999999999999999999999999999999999999999999999999999875422111 11
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE 166 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~ 166 (195)
..........+..++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..+.
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~ 166 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGE 166 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHH
Confidence 12233344456778889999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++++|++++|+||+++|||+++||++++
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l 195 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKL 195 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHH
Confidence 99999999999999999999999998753
No 63
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-45 Score=299.43 Aligned_cols=187 Identities=21% Similarity=0.274 Sum_probs=161.1
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh-c----
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK-E---- 81 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~-~---- 81 (195)
+++.+.++++++|++|+||+|++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++..... .
T Consensus 2 ~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~ 81 (288)
T PRK08290 2 EYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPD 81 (288)
T ss_pred CCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccc
Confidence 46679999999999999999999999999999999999999999999999999999999999999997632111 0
Q ss_pred ------------cc-HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCccccccc
Q 041986 82 ------------GR-VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFH 148 (195)
Q Consensus 82 ------------~~-~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~ 148 (195)
.. ..........+.+++..+.++|||+||+|||+|+|+|++|+++||+||++++++|++||+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl- 160 (288)
T PRK08290 82 QHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI- 160 (288)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-
Confidence 00 0111112234456777889999999999999999999999999999999999999999999998
Q ss_pred CCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 149 PDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 149 p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
|+ .+.+++++++| ..+++++++|++++|+||+++||||++||++++
T Consensus 161 ~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l 207 (288)
T PRK08290 161 PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDEL 207 (288)
T ss_pred Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHH
Confidence 44 35677899999 899999999999999999999999999998753
No 64
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.8e-45 Score=302.24 Aligned_cols=187 Identities=20% Similarity=0.321 Sum_probs=164.6
Q ss_pred CCcceEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcc
Q 041986 6 SSQIHVLVEE--RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEG 82 (195)
Q Consensus 6 ~~~~~v~~~~--~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~ 82 (195)
.+++.|.+++ +++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.| +.||+|.|++++..... .
T Consensus 62 ~~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~-~ 140 (327)
T PLN02921 62 KEFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGY-V 140 (327)
T ss_pred cCCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccc-c
Confidence 4677899998 589999999999999999999999999999999999999999999999 89999999997643110 1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986 83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG 162 (195)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g 162 (195)
..+....+ ...+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|
T Consensus 141 ~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG 218 (327)
T PLN02921 141 GPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG 218 (327)
T ss_pred chhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence 11111111 1235677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
..+++++++|++++|+||+++||||+|||++++
T Consensus 219 ~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l 252 (327)
T PLN02921 219 QKKAREMWFLARFYTASEALKMGLVNTVVPLDEL 252 (327)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHH
Confidence 899999999999999999999999999998753
No 65
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-45 Score=300.69 Aligned_cols=190 Identities=21% Similarity=0.261 Sum_probs=163.4
Q ss_pred CCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc
Q 041986 3 LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG 82 (195)
Q Consensus 3 ~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~ 82 (195)
..++++++|.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++.......
T Consensus 4 ~~~~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~ 83 (302)
T PRK08272 4 VDLDNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83 (302)
T ss_pred cccCCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999876432110
Q ss_pred ---c----------------HH--HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC
Q 041986 83 ---R----------------VE--ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141 (195)
Q Consensus 83 ---~----------------~~--~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p 141 (195)
. .. ..........+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p 163 (302)
T PRK08272 84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP 163 (302)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence 0 00 01122345566788889999999999999999999999999999999999999999
Q ss_pred cccccccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 142 EVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 142 e~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
|+++|.+|+. .++++++| .++.+++++|++++|+||+++||||++||++++
T Consensus 164 e~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 215 (302)
T PRK08272 164 PTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEEL 215 (302)
T ss_pred chhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHH
Confidence 9998666642 35678899 999999999999999999999999999998753
No 66
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=2.1e-45 Score=296.66 Aligned_cols=185 Identities=22% Similarity=0.302 Sum_probs=162.9
Q ss_pred CcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC--CceeccccchhHHHhhhccc
Q 041986 7 SQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG--RSFCAGGDVVGAYRMLKEGR 83 (195)
Q Consensus 7 ~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g--~~F~~G~dl~~~~~~~~~~~ 83 (195)
.++.|.+++ +++|++||||+|+ .|++|.+++.+|.++++.++.|+++++|||||.| ++||+|.|++++..... .
T Consensus 9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~--~ 85 (278)
T PLN03214 9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT--S 85 (278)
T ss_pred CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcccc--c
Confidence 455789998 6999999999985 7999999999999999999999999999999998 69999999998653111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccc-cCCCchhhHhhhcch
Q 041986 84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGF-HPDVGSSYYLSRLPG 162 (195)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~-~p~~g~~~~l~r~~g 162 (195)
......+.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|+++++++++|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G 165 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID 165 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC
Confidence 1111233333455778899999999999999999999999999999999999999999999999 599999999999999
Q ss_pred -HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
.++++++++|++++++||+++||||++||+++
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~ 198 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecChHH
Confidence 99999999999999999999999999999875
No 67
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.6e-45 Score=292.35 Aligned_cols=183 Identities=22% Similarity=0.333 Sum_probs=159.9
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
+++.+.++++++|++|+||+|++.|++|.+++++|.++++.++ +++++||++|.|+.||+|.|++++.........
T Consensus 2 ~~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~-- 77 (255)
T PRK07112 2 DYQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA-- 77 (255)
T ss_pred CCceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh--
Confidence 3567999999999999999999999999999999999999998 369999999999999999999987542221111
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG 165 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a 165 (195)
.........+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ ..++++++| ..+
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a 156 (255)
T PRK07112 78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKA 156 (255)
T ss_pred hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHH
Confidence 011123345678889999999999999999999999999999999999999999999999999865 567899999 999
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++++++|++++|+||+++||||++||+++
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 157 HYMTLMTQPVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred HHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence 99999999999999999999999998753
No 68
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.5e-45 Score=288.82 Aligned_cols=172 Identities=26% Similarity=0.432 Sum_probs=157.4
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (195)
|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++.... ...+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-------~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF-------AIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh-------HHHH
Confidence 578889999999999999999999999999999999999999999999999999999999999865311 1123
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhh
Q 041986 91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGL 170 (195)
Q Consensus 91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l 170 (195)
.+.+..++..+.++||||||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|++|.++.++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred cCCCCCHHHHHhcCccccc
Q 041986 171 TGATLSGEEMLFCGLATHY 189 (195)
Q Consensus 171 ~g~~~~a~ea~~~Glv~~v 189 (195)
+|++++|+||+++||||++
T Consensus 155 ~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred hCCccCHHHHHHCCCcccc
Confidence 9999999999999999964
No 69
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.3e-45 Score=303.86 Aligned_cols=189 Identities=63% Similarity=1.061 Sum_probs=171.5
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE 86 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~ 86 (195)
..+.|.+++++++.+||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|.|+.||+|+|++.+...........
T Consensus 40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~ 119 (407)
T PLN02851 40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE 119 (407)
T ss_pred CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999998865332222233
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHH
Q 041986 87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE 166 (195)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~ 166 (195)
...++....++...+.++|||+||++||+|+|||+.|+++||+||++++++|++||+++|++|+.|++++++|++|..+.
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~ 199 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGE 199 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHH
Confidence 44566667778888999999999999999999999999999999999999999999999999999999999999997799
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++||++++++||+++||++++||++++
T Consensus 200 ~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 200 YLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred HHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 99999999999999999999999998753
No 70
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=5.2e-45 Score=297.57 Aligned_cols=188 Identities=23% Similarity=0.285 Sum_probs=161.1
Q ss_pred cceEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-------CceeccccchhHHHh
Q 041986 8 QIHVLVEE--RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-------RSFCAGGDVVGAYRM 78 (195)
Q Consensus 8 ~~~v~~~~--~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-------~~F~~G~dl~~~~~~ 78 (195)
+.++.+++ +++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 45788888 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred h------hcccHHHHHHH-HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEe-CCeEEecCcccccccCC
Q 041986 79 L------KEGRVEECKEL-FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT-EKTVFAMPEVLIGFHPD 150 (195)
Q Consensus 79 ~------~~~~~~~~~~~-~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~-~~a~~~~pe~~~G~~p~ 150 (195)
. ........... .....++.+.+..+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 00000000011 1112346677889999999999999999999999999999999 68999999999999999
Q ss_pred CchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 151 VGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 151 ~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++++++|++| ..+.+++++|++++|+||+++|||+++||++++
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l 227 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAEL 227 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHH
Confidence 999999999999 899999999999999999999999999998753
No 71
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1e-44 Score=296.42 Aligned_cols=176 Identities=20% Similarity=0.331 Sum_probs=158.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSF 97 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l 97 (195)
+++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| +.||+|.|++++...... .......+.+.++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~-~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAG-NPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhccc-ChhHHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999 699999999987643211 112233445556678
Q ss_pred HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCCCCC
Q 041986 98 VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLS 176 (195)
Q Consensus 98 ~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~ 176 (195)
++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++++++++|++++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHhcCccccccCCCCC
Q 041986 177 GEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 177 a~ea~~~Glv~~vv~~~~l 195 (195)
|+||+++|||+++||++++
T Consensus 197 A~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred HHHHHHcCChheecCchhc
Confidence 9999999999999998764
No 72
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-45 Score=290.23 Aligned_cols=174 Identities=24% Similarity=0.311 Sum_probs=154.1
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHH
Q 041986 14 EERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRT 93 (195)
Q Consensus 14 ~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~ 93 (195)
+++++|++||||||+ .|+++.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++.... .........+.
T Consensus 7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~---~~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATP---GFTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhcc---chhHHHHHHHH
Confidence 468899999999997 59999999999999999999999999999999999999999999865321 11111222334
Q ss_pred HHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcC
Q 041986 94 LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTG 172 (195)
Q Consensus 94 ~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g 172 (195)
..+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++++|++| ..+.+++++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 5567888999999999999999999999999999999999999999999999986 45678999999 8999999999
Q ss_pred CCCCHHHHHhcCccccccCCCC
Q 041986 173 ATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 173 ~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++++|+||+++||||++||+++
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~ 181 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQ 181 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHH
Confidence 9999999999999999999875
No 73
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-44 Score=282.58 Aligned_cols=179 Identities=18% Similarity=0.168 Sum_probs=160.5
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
+.+.++++++|++||||+|+ .|++|.+++++|.++++.++ +++++||++|.|+.||+|.|++++... .....
T Consensus 3 ~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~~ 74 (229)
T PRK06213 3 ELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAAI 74 (229)
T ss_pred ceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhHH
Confidence 36889999999999999984 79999999999999999998 467999999999999999999987532 12223
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE 166 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~ 166 (195)
.+.....++++++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+.|++++..++++++| ..++
T Consensus 75 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~ 154 (229)
T PRK06213 75 ALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQ 154 (229)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHH
Confidence 44556677888999999999999999999999999999999999999 999999999999888888888899899 8899
Q ss_pred HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++++|++++|+||+++||||+++|++++
T Consensus 155 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l 183 (229)
T PRK06213 155 RAVINAEMFDPEEAVAAGFLDEVVPPEQL 183 (229)
T ss_pred HHHHcCcccCHHHHHHCCCceeccChHHH
Confidence 99999999999999999999999998753
No 74
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-44 Score=294.06 Aligned_cols=185 Identities=21% Similarity=0.245 Sum_probs=153.1
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchh-HHH---hh-hc
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVG-AYR---ML-KE 81 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~-~~~---~~-~~ 81 (195)
+++.+.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|+++ +.. .. .+
T Consensus 3 ~~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~ 82 (298)
T PRK12478 3 DFQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTD 82 (298)
T ss_pred CceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999986 211 00 00
Q ss_pred c--c-HHHHH---HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccc-cccCCCchh
Q 041986 82 G--R-VEECK---ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLI-GFHPDVGSS 154 (195)
Q Consensus 82 ~--~-~~~~~---~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~-G~~p~~g~~ 154 (195)
. . ..... ........++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++ |++|+ +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--~~ 160 (298)
T PRK12478 83 GRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GM 160 (298)
T ss_pred cccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--hH
Confidence 0 0 01110 000111235667889999999999999999999999999999999999999999997 88752 33
Q ss_pred hHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 155 YYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 155 ~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+ .+++| .++++++++|++++|+||+++||||+|||++++
T Consensus 161 ~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l 200 (298)
T PRK12478 161 W--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERL 200 (298)
T ss_pred H--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence 3 24589 899999999999999999999999999998753
No 75
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=2.1e-43 Score=279.44 Aligned_cols=178 Identities=21% Similarity=0.247 Sum_probs=153.5
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCceeccccchhHHHhhhcccHHHHHH
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVD-FVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE 89 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~-~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 89 (195)
+.++++++|++|+||||++ |+++.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++... .........
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence 5678899999999999984 9999999999999999999888865 77789999999999999976421 111122223
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEe-CCeEEecCccccccc-CCCchhhHhhhcch-HHH-
Q 041986 90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT-EKTVFAMPEVLIGFH-PDVGSSYYLSRLPG-HLG- 165 (195)
Q Consensus 90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~-~~a~~~~pe~~~G~~-p~~g~~~~l~r~~g-~~a- 165 (195)
....+.+++.++.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++ |++ ++.++++++| ..+
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~ 157 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAAR 157 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHH
Confidence 44556778889999999999999999999999999999999998 568999999999997 555 5788999999 888
Q ss_pred HHHhhcCCCCCHHHHHhcCccccccCC
Q 041986 166 EYLGLTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
++++++|++++|+||+++||||+++|+
T Consensus 158 ~~llltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 158 RDVLLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred HHHHHcCCcCCHHHHHHCCCcceecCC
Confidence 689999999999999999999999985
No 76
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.9e-43 Score=316.23 Aligned_cols=185 Identities=20% Similarity=0.335 Sum_probs=166.9
Q ss_pred eEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 10 HVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 10 ~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
.+.++. +++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++..... .......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence 677874 89999999999999999999999999999999999999999999999999999999998754211 1112233
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
.+.+...+++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.+
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 45556677888999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++|++++|+||+++||||++||++++
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l 193 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKL 193 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHH
Confidence 9999999999999999999999998753
No 77
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=3.1e-43 Score=270.50 Aligned_cols=182 Identities=34% Similarity=0.530 Sum_probs=169.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (195)
+.++++++|++|+||+|++.|++|.+++++|.++++.++.|+++++|||||.++.||+|.|++++........ ...++
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~--~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGE--EARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccch--hHHHH
Confidence 4678889999999999998999999999999999999999999999999999999999999999876543322 34577
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986 91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG 169 (195)
Q Consensus 91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~ 169 (195)
.+.+++++.++..+|||+|+++||+|.|+|++++++||+|+++++++|++||+++|++|+.|+.+++++++| ..+.+++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCCCHHHHHhcCccccccCCCC
Q 041986 170 LTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
++|++++++||+++||+++++|.++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~ 183 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEE 183 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhH
Confidence 9999999999999999999999865
No 78
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.7e-42 Score=309.76 Aligned_cols=185 Identities=18% Similarity=0.303 Sum_probs=166.5
Q ss_pred eEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986 10 HVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK 88 (195)
Q Consensus 10 ~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~ 88 (195)
.+.++. +++|++|+||+|++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++...... ......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFAL-PDAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccC-CHHHHH
Confidence 677774 789999999999999999999999999999999999999999999999999999999988542111 112223
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986 89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY 167 (195)
Q Consensus 89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~ 167 (195)
.+.+..++++.++..+|||+||++||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.+
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 44455677888999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++++|++++|+||+++||||+++|++++
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l 193 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKL 193 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHH
Confidence 9999999999999999999999997653
No 79
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.2e-41 Score=304.89 Aligned_cols=184 Identities=24% Similarity=0.386 Sum_probs=165.8
Q ss_pred CCcceEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeCCCceeccccchhHHHhhhccc
Q 041986 6 SSQIHVLVEERANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFV-VIKGNGRSFCAGGDVVGAYRMLKEGR 83 (195)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~v-vl~~~g~~F~~G~dl~~~~~~~~~~~ 83 (195)
+.++++.++++++|++||||+|+ +.|++|.+++.+|.+++++++.|++++++ |++|.|+.||+|.|++++.... .
T Consensus 10 ~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~---~ 86 (737)
T TIGR02441 10 MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACK---T 86 (737)
T ss_pred CCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccC---C
Confidence 45667999999999999999998 58999999999999999999999999975 5799999999999999885321 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCcccccccCCCchhhHhhhcc
Q 041986 84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVLIGFHPDVGSSYYLSRLP 161 (195)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~~G~~p~~g~~~~l~r~~ 161 (195)
......+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|+|++
T Consensus 87 ~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprli 166 (737)
T TIGR02441 87 AQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLT 166 (737)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhh
Confidence 1223345556678889999999999999999999999999999999999987 58999999999999999999999999
Q ss_pred h-HHHHHHhhcCCCCCHHHHHhcCccccccCC
Q 041986 162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
| ..+.+++++|++++|+||+++||||+|||+
T Consensus 167 G~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 167 GVPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred CHHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 9 899999999999999999999999999986
No 80
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=2.2e-41 Score=292.58 Aligned_cols=192 Identities=17% Similarity=0.189 Sum_probs=161.8
Q ss_pred CCCCcceEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeC-CCceecccc
Q 041986 4 KQSSQIHVLVEERANSRTVILNRPH----------VLNALNTSMVALLTKQYESWE-NNSGVDFVVIKGN-GRSFCAGGD 71 (195)
Q Consensus 4 ~~~~~~~v~~~~~~~v~~i~l~~p~----------~~N~~~~~~~~~l~~~l~~~~-~~~~~~~vvl~~~-g~~F~~G~d 71 (195)
++..++++.++++++|++|+||+|+ +.|++|.+++.+|.++|+.++ .|+++|+|||||. |+.||+|.|
T Consensus 6 ~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~D 85 (546)
T TIGR03222 6 EPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGAN 85 (546)
T ss_pred CCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcC
Confidence 4556779999999999999999975 899999999999999999999 7899999999997 489999999
Q ss_pred chhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCccc-cccc
Q 041986 72 VVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVL-IGFH 148 (195)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~-~G~~ 148 (195)
++++.....................+.+.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++
T Consensus 86 L~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~ 165 (546)
T TIGR03222 86 IFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVL 165 (546)
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcC
Confidence 9987432111111010111112234556677899999999999999999999999999999986 799999997 9999
Q ss_pred CCCchhhHhh--hcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 149 PDVGSSYYLS--RLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 149 p~~g~~~~l~--r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
|++|+..++. +++| .+|.+++++|++++|+||+++||||++||++++
T Consensus 166 P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l 215 (546)
T TIGR03222 166 PGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQF 215 (546)
T ss_pred CccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHH
Confidence 9999998887 6888 899999999999999999999999999998753
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.4e-41 Score=302.68 Aligned_cols=184 Identities=23% Similarity=0.354 Sum_probs=163.4
Q ss_pred ceEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986 9 IHVLVEE-RANSRTVILNRP-HVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE 85 (195)
Q Consensus 9 ~~v~~~~-~~~v~~i~l~~p-~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~ 85 (195)
..+.+++ +++|++|||||| ++.|++|.+++.+|.+++++++.|+++++|||+|.+ +.||+|.|++++...... .
T Consensus 5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~---~ 81 (708)
T PRK11154 5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTA---Q 81 (708)
T ss_pred ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCH---H
Confidence 3577787 789999999999 589999999999999999999999999999999875 899999999987532111 1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCcccccccCCCchhhHhhhcch-
Q 041986 86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVLIGFHPDVGSSYYLSRLPG- 162 (195)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~~G~~p~~g~~~~l~r~~g- 162 (195)
....+.+..+++++++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|+|++|
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~ 161 (708)
T PRK11154 82 EAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGV 161 (708)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCH
Confidence 12234445567888999999999999999999999999999999999986 599999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
..|.+|+++|++++|+||+++||||+++|++++
T Consensus 162 ~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 194 (708)
T PRK11154 162 STALDMILTGKQLRAKQALKLGLVDDVVPHSIL 194 (708)
T ss_pred HHHHHHHHhCCcCCHHHHHHCCCCcEecChHHH
Confidence 999999999999999999999999999998753
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=3.4e-41 Score=301.13 Aligned_cols=179 Identities=22% Similarity=0.352 Sum_probs=159.8
Q ss_pred EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCceeccccchhHHHhhhcccHHHHHHHH
Q 041986 14 EERANSRTVILNRP-HVLNALNTSMVALLTKQYESWENNSGVDFVVI-KGNGRSFCAGGDVVGAYRMLKEGRVEECKELF 91 (195)
Q Consensus 14 ~~~~~v~~i~l~~p-~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl-~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~ 91 (195)
+.+++|++|||||| ++.|++|.+++.+|.++|+.++.|+++++||| +|.|+.||+|.|++++..... ......+.
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~---~~~~~~~~ 82 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQT---AGEAKALA 82 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCC---hhHHHHHH
Confidence 45789999999999 68999999999999999999999999999986 567899999999998753211 12223444
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986 92 RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL 168 (195)
Q Consensus 92 ~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l 168 (195)
+..++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++++|++| ..+.++
T Consensus 83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l 162 (699)
T TIGR02440 83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM 162 (699)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence 55677888999999999999999999999999999999999986 799999999999999999999999999 999999
Q ss_pred hhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+++|++++|+||+++||||+++|++++
T Consensus 163 lltG~~~~a~eA~~~GLV~~vv~~~~l 189 (699)
T TIGR02440 163 ILTGKQLRAKQALKLGLVDDVVPQSIL 189 (699)
T ss_pred HHcCCcCCHHHHHhCCCCcEecChhHH
Confidence 999999999999999999999998763
No 83
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=7.5e-41 Score=289.30 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=158.0
Q ss_pred eEEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCCc-eeccccchh
Q 041986 10 HVLVEERANSRTVILNRPHVL-------------NALNTSMVALLTKQYESWEN-NSGVDFVVIKGNGRS-FCAGGDVVG 74 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~-------------N~~~~~~~~~l~~~l~~~~~-~~~~~~vvl~~~g~~-F~~G~dl~~ 74 (195)
.+.++++++|++||||||++. |+++.+++.+|.+++++++. |+++++|||||.|+. ||+|.|+..
T Consensus 259 ~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~ 338 (546)
T TIGR03222 259 DVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALL 338 (546)
T ss_pred EEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccc
Confidence 455667899999999999988 99999999999999999984 599999999999987 999999984
Q ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-cchhcchh-hHHhhhcCEEEE-------eCCeEEecCcccc
Q 041986 75 AYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM-DGITMGGG-AGIAVHASYRLA-------TEKTVFAMPEVLI 145 (195)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav-~G~~~g~G-~~l~l~~D~~ia-------~~~a~~~~pe~~~ 145 (195)
.. .. ... .........++++.++..+|||+||+| ||+|+||| ++|+++||++|+ +++++|++||+++
T Consensus 339 ~~-~~--~~~-~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~l 414 (546)
T TIGR03222 339 EA-HK--DHW-FVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNF 414 (546)
T ss_pred cc-cc--cch-hHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcccc
Confidence 21 11 110 112222334567888999999999999 89999999 999999999999 8999999999999
Q ss_pred cccCCCchhhHhhhcc-h-HHH--HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 146 GFHPDVGSSYYLSRLP-G-HLG--EYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 146 G~~p~~g~~~~l~r~~-g-~~a--~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
|++|++|++++|+|++ | .++ .+++++|++++|+||+++|||++++|++++
T Consensus 415 Gl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l 468 (546)
T TIGR03222 415 GLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDW 468 (546)
T ss_pred ccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHH
Confidence 9999999999999998 8 788 559999999999999999999999998753
No 84
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.2e-40 Score=288.83 Aligned_cols=191 Identities=16% Similarity=0.197 Sum_probs=161.1
Q ss_pred CCCCcceEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCC-Cceecccc
Q 041986 4 KQSSQIHVLVEERANSRTVILNRP-------H---VLNALNTSMVALLTKQYESWE-NNSGVDFVVIKGNG-RSFCAGGD 71 (195)
Q Consensus 4 ~~~~~~~v~~~~~~~v~~i~l~~p-------~---~~N~~~~~~~~~l~~~l~~~~-~~~~~~~vvl~~~g-~~F~~G~d 71 (195)
+.++++++.++++++|++|||||| + +.|+++.+++.+|.++++.++ .|+++++|||||.+ +.||+|.|
T Consensus 10 ~~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D 89 (550)
T PRK08184 10 EPSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN 89 (550)
T ss_pred CCCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence 345788999999999999999965 3 889999999999999999998 68999999999985 89999999
Q ss_pred chhHHHhhhcccHHHHHHHH-HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCccc-ccc
Q 041986 72 VVGAYRMLKEGRVEECKELF-RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVL-IGF 147 (195)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~-~G~ 147 (195)
++.+......... ...... +....+.+.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|+
T Consensus 90 L~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl 168 (550)
T PRK08184 90 IFMLGGSSHAWKV-NFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV 168 (550)
T ss_pred HHhHhccccchhh-hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence 9987532111111 011111 11223455677899999999999999999999999999999987 899999997 999
Q ss_pred cCCCchhhHhh--hcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 148 HPDVGSSYYLS--RLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 148 ~p~~g~~~~l~--r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
+|++|+.++++ +++| ..+.+++++|++++|+||+++||||++||++++
T Consensus 169 ~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l 219 (550)
T PRK08184 169 LPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKF 219 (550)
T ss_pred CCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHH
Confidence 99999999998 6789 889999999999999999999999999998753
No 85
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=257.38 Aligned_cols=190 Identities=26% Similarity=0.375 Sum_probs=172.8
Q ss_pred CCcceEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986 6 SSQIHVLVEERANSRTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV 84 (195)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~l~-~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~ 84 (195)
+.+..+.+++++++++|.++ ||++.|+++.+++.++.++|+.+..|+++..++++|.|++||+|.|+..+......+..
T Consensus 4 ~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~ 83 (266)
T KOG0016|consen 4 MRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN 83 (266)
T ss_pred ccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence 35668899999999999999 99999999999999999999999999999999999999999999999998877655443
Q ss_pred HH---HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcc
Q 041986 85 EE---CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP 161 (195)
Q Consensus 85 ~~---~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~ 161 (195)
.. ..+....+..+++.+..+|||+||.||||++|.|+.+...||+++|+|+++|..|++++|+.|.+++++.+|+++
T Consensus 84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM 163 (266)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence 32 223344455688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
| ..|.++++.|++++|+||++.|||++++|.+.+
T Consensus 164 G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf 198 (266)
T KOG0016|consen 164 GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETF 198 (266)
T ss_pred chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHH
Confidence 9 899999999999999999999999999998653
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.2e-40 Score=288.70 Aligned_cols=185 Identities=17% Similarity=0.116 Sum_probs=157.2
Q ss_pred CcceEEE--EEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC-Cceecc
Q 041986 7 SQIHVLV--EERANSRTVILNRPHVL-------------NALNTSMVALLTKQYESWEN-NSGVDFVVIKGNG-RSFCAG 69 (195)
Q Consensus 7 ~~~~v~~--~~~~~v~~i~l~~p~~~-------------N~~~~~~~~~l~~~l~~~~~-~~~~~~vvl~~~g-~~F~~G 69 (195)
.+.++.+ +++++|++||||||++. |++|.+|+.+|.+++++++. |+++|+|||||.| +.||+|
T Consensus 258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG 337 (550)
T PRK08184 258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA 337 (550)
T ss_pred eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence 3444444 45689999999999977 79999999999999999986 7899999999999 599999
Q ss_pred ccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc-chhcchh-hHHhhhcCEEEEe-------CCeEEec
Q 041986 70 GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD-GITMGGG-AGIAVHASYRLAT-------EKTVFAM 140 (195)
Q Consensus 70 ~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~-G~~~g~G-~~l~l~~D~~ia~-------~~a~~~~ 140 (195)
.|++... ... . ............++.++..+||||||+|| |+|+||| ++|+++||++|++ ++++|++
T Consensus 338 ~Dl~~~~-~~~--~-~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 413 (550)
T PRK08184 338 ADATLLA-HKD--H-WLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL 413 (550)
T ss_pred CChhhhc-ccc--h-HHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence 9987322 111 1 01112234455678889999999999997 9999999 9999999999999 9999999
Q ss_pred CcccccccCCCchhhHhhhc-ch-HHHHHH--hhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 141 PEVLIGFHPDVGSSYYLSRL-PG-HLGEYL--GLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 141 pe~~~G~~p~~g~~~~l~r~-~g-~~a~~l--~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
||+++|++|++|++++|+|+ +| .++.++ +++|++++|+||+++||||++||++++
T Consensus 414 pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l 472 (550)
T PRK08184 414 SALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDW 472 (550)
T ss_pred ccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHH
Confidence 99999999999999999988 69 888886 589999999999999999999998763
No 87
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-40 Score=249.07 Aligned_cols=181 Identities=24% Similarity=0.384 Sum_probs=168.5
Q ss_pred ceEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhccc
Q 041986 9 IHVLVEE----RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGR 83 (195)
Q Consensus 9 ~~v~~~~----~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~ 83 (195)
+.+.+++ +.+|..|-+|||.+.|+++..++++|.++|+.+..|+.+|+|++++.- +.||+|.|+++-... +
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M----s 102 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM----S 102 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----C
Confidence 3555554 558999999999999999999999999999999999999999999986 899999999986543 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986 84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG- 162 (195)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g- 162 (195)
+.+...+.+..+.++..+..+|.|+|+++.|.++|||++|+|+||+|++++++.|+++|.+++++|+.|++++|+|++|
T Consensus 103 ~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ 182 (291)
T KOG1679|consen 103 PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV 182 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986 163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
..+.++++|++.+++.||...||||++|..+
T Consensus 183 alaKELIftarvl~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 183 ALAKELIFTARVLNGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred HHHHhHhhhheeccchhHHhcchHHHHHhcC
Confidence 9999999999999999999999999999765
No 88
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=9.6e-40 Score=247.65 Aligned_cols=187 Identities=24% Similarity=0.375 Sum_probs=165.7
Q ss_pred CcceEEEE---EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh---
Q 041986 7 SQIHVLVE---ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK--- 80 (195)
Q Consensus 7 ~~~~v~~~---~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~--- 80 (195)
+++...+. .+..|..+.+|||.+.|++|..++.|+.++++.+..|+++++|||+|.|+.||+|+|+..+.....
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~ 96 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP 96 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc
Confidence 35544444 245799999999999999999999999999999999999999999999999999999877654311
Q ss_pred -c----ccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhh
Q 041986 81 -E----GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSY 155 (195)
Q Consensus 81 -~----~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~ 155 (195)
. ......+++...+++-+..+.+||||+|++++|.|+|+|..|..+||+|+|++++.|+.-|+.+|+..+.|...
T Consensus 97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 1 11234566667778888899999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcch--HHHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986 156 YLSRLPG--HLGEYLGLTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 156 ~l~r~~g--~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
|||+.+| +.++++.+|++.|+|.||++.|||.+|+|+.
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk 216 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDK 216 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence 9999999 6789999999999999999999999999874
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.8e-39 Score=240.56 Aligned_cols=188 Identities=22% Similarity=0.326 Sum_probs=164.2
Q ss_pred CCcceEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--C-CceeccccchhHHHhhhc
Q 041986 6 SSQIHVLVEER-ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN--G-RSFCAGGDVVGAYRMLKE 81 (195)
Q Consensus 6 ~~~~~v~~~~~-~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~--g-~~F~~G~dl~~~~~~~~~ 81 (195)
..++.|.+++. ++++.|+||||+.+|++.+..+.|+.++|+.++.|+++.+|+|||. | +.||+|.|-+.-..+..-
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY 94 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY 94 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence 36889999998 9999999999999999999999999999999999999999999986 5 799999998754332110
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcc
Q 041986 82 GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP 161 (195)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~ 161 (195)
.+.+...+ -+..++-+.|..+|||+||.|+|+++|||-.|-+.||+.|+++++.|++...++|-+-++.++..|.|++
T Consensus 95 ~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 95 VDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred cCCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 00011111 2455677788899999999999999999999999999999999999999999999998888888999999
Q ss_pred h-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
| +.|+++-+.++.++|+||+++|+||.|||.++|
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~L 207 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADL 207 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHH
Confidence 9 999999999999999999999999999998764
No 90
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=237.32 Aligned_cols=193 Identities=52% Similarity=0.875 Sum_probs=182.9
Q ss_pred CCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhc
Q 041986 3 LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKE 81 (195)
Q Consensus 3 ~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~ 81 (195)
...+..+.|.++..+....||||||+..|++|.+|+.++.-.|...+.++.+++||+.|.+ +.||+|+|+........+
T Consensus 32 ~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d 111 (401)
T KOG1684|consen 32 VSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKD 111 (401)
T ss_pred cccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhc
Confidence 4455667899999999999999999999999999999999999999999999999999996 999999999988777777
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcc
Q 041986 82 GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP 161 (195)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~ 161 (195)
+.....+.++..-..+...+.++.||.||.++|..+|||+.|+..--||||+|++.|..||..+|++|+.|+++.++|+.
T Consensus 112 ~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlp 191 (401)
T KOG1684|consen 112 KETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLP 191 (401)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCc
Confidence 77778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 162 GHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 162 g~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
|..+.++.|||+++++.||+.+||..+.||+++|
T Consensus 192 g~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l 225 (401)
T KOG1684|consen 192 GYLGLYLGLTGQRLSGADALRCGLATHYVPSEKL 225 (401)
T ss_pred cHHHHhhhhccceecchHHHHhcchhhccchhhh
Confidence 9999999999999999999999999999999875
No 91
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-34 Score=213.47 Aligned_cols=182 Identities=23% Similarity=0.351 Sum_probs=161.8
Q ss_pred eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHH
Q 041986 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE 89 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~ 89 (195)
..+++.+++|-.|++++|++.|+++.+|+.+|.+.|.....+.++|+|||+..|+.||+|.|++++..... .+.-.+
T Consensus 33 ~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g---~d~hae 109 (287)
T KOG1682|consen 33 LGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPG---SDIHAE 109 (287)
T ss_pred ccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCcc---chHHHH
Confidence 34556678999999999999999999999999999999888889999999999999999999999875432 234457
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986 90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL 168 (195)
Q Consensus 90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l 168 (195)
.++.+-+++.-|.++|+|+|+-|||.+..+|+.|..+||++++++++.|..|...+|++=.. ...-+.|.++ ..+.+|
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCST-PGvAlaRavpRkva~~M 188 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCST-PGVALARAVPRKVAAYM 188 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecC-cchhHhhhcchhHHHHH
Confidence 77888899999999999999999999999999999999999999999999999999986211 1244688888 889999
Q ss_pred hhcCCCCCHHHHHhcCccccccCCCCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLSAVC 195 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~~~l 195 (195)
++||++++++||+..|||.++||.+++
T Consensus 189 L~Tg~Pi~~eeAl~sGlvskvVp~~el 215 (287)
T KOG1682|consen 189 LMTGLPITGEEALISGLVSKVVPAEEL 215 (287)
T ss_pred HHhCCCCchHHHHHhhhhhhcCCHHHH
Confidence 999999999999999999999999875
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.87 E-value=1.9e-21 Score=148.73 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986 20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY 99 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (195)
+.|.++. .++......+.++|+.++.++ ++.|+|.=+ |.|+++..-. .+.+
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~~-------------------~i~~ 52 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDSTR-------------------EIVQ 52 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHHH-------------------HHHH
Confidence 4555643 356677788999999998654 888888754 6777665321 3455
Q ss_pred HHhhCCCcEEEEEc---chhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCC--------------chhhHhhhcch
Q 041986 100 LVATYSKPHVAIMD---GITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDV--------------GSSYYLSRLPG 162 (195)
Q Consensus 100 ~l~~~~~p~Iaav~---G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~--------------g~~~~l~r~~g 162 (195)
++..+|||+|++++ |+|.|+|+.++++||++++++++.|+.+++..+..+.. .....+++..|
T Consensus 53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 132 (187)
T cd07020 53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG 132 (187)
T ss_pred HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66789999999999 99999999999999999999999999999885544432 23446777777
Q ss_pred -H--HHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986 163 -H--LGEYLGLTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 163 -~--~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
. .+++++++|+.|+++||+++||+|++++++
T Consensus 133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 3 678999999999999999999999999875
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.86 E-value=1.1e-21 Score=148.78 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986 36 SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI 115 (195)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~ 115 (195)
..+.+|.++++++++|+++++|||++ +|.|.|+.... .+.+++..+..++||+||+++|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~ 81 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGN 81 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCc
Confidence 45689999999999999999999998 68888876421 23345667778999999999999
Q ss_pred hcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhh--------Hhhhcch---HHHHHHhhcCCCCCHHHHHhcC
Q 041986 116 TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSY--------YLSRLPG---HLGEYLGLTGATLSGEEMLFCG 184 (195)
Q Consensus 116 ~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~--------~l~r~~g---~~a~~l~l~g~~~~a~ea~~~G 184 (195)
|.|+|+.++++||++++++.+.|+.+.+..+.-+...... .+++..| ....+++..|..++|++|++.|
T Consensus 82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G 161 (177)
T cd07014 82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG 161 (177)
T ss_pred hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence 9999999999999999999999999987665332211111 3333333 3467888899999999999999
Q ss_pred ccccccCCCC
Q 041986 185 LATHYSLSAV 194 (195)
Q Consensus 185 lv~~vv~~~~ 194 (195)
|||++.+.++
T Consensus 162 LVD~v~~~~e 171 (177)
T cd07014 162 LVDSLGSFDD 171 (177)
T ss_pred CcccCCCHHH
Confidence 9999998664
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.73 E-value=5.9e-17 Score=126.12 Aligned_cols=87 Identities=20% Similarity=0.196 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc
Q 041986 34 NTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD 113 (195)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~ 113 (195)
+...+.+|.++|+.++.|+++++|||+ .||.|.|+.... .+.+.++.+..++||+|++++
T Consensus 19 ~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~----------------~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 19 GNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE----------------VIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEEC
Confidence 455689999999999999999999998 589999997642 122345567788999999999
Q ss_pred chhcchhhHHhhhcCEEEEeCCeEEec
Q 041986 114 GITMGGGAGIAVHASYRLATEKTVFAM 140 (195)
Q Consensus 114 G~~~g~G~~l~l~~D~~ia~~~a~~~~ 140 (195)
|.|.|+|+.|+++||.+++++.+.++.
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~gs 105 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTGS 105 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence 999999999999999999999988864
No 95
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.69 E-value=6.2e-16 Score=115.44 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM 112 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav 112 (195)
++..+..+|.+.|+.++.|++++.|+|.. .|.|.++... ..+.+.+..++||+|+.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-------------------MNIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence 45678899999999999999999999987 4777766432 234456677889999999
Q ss_pred cchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhh------H----hhhc---------ch-HHHHHHhhcC
Q 041986 113 DGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSY------Y----LSRL---------PG-HLGEYLGLTG 172 (195)
Q Consensus 113 ~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~------~----l~r~---------~g-~~a~~l~l~g 172 (195)
+|.|.++|+.|+++||.|++.+++.|++..+..+.....+... . ..+. .. ....+.+..+
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 9999999999999999999999999999887655442210011 1 1111 12 2345667789
Q ss_pred CCCCHHHHHhcCccccc
Q 041986 173 ATLSGEEMLFCGLATHY 189 (195)
Q Consensus 173 ~~~~a~ea~~~Glv~~v 189 (195)
..++++||++.||||++
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 99999999999999985
No 96
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.64 E-value=2.3e-15 Score=117.50 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=73.4
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhC
Q 041986 26 RPHVLNA-LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATY 104 (195)
Q Consensus 26 ~p~~~N~-~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 104 (195)
+|...|. ++..++.+|.++|++++.|+++++|||+. +|.|.++... ..+.+.+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~- 72 (214)
T cd07022 14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA- 72 (214)
T ss_pred CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc-
Confidence 4443443 45688999999999999999999999986 4666665432 112223333334
Q ss_pred CCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCc
Q 041986 105 SKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPE 142 (195)
Q Consensus 105 ~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe 142 (195)
+||+||+++|.|.|+|+.++++||.+++++.+.|+...
T Consensus 73 ~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG 110 (214)
T cd07022 73 GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIG 110 (214)
T ss_pred CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeee
Confidence 69999999999999999999999999999999886543
No 97
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.61 E-value=5.1e-15 Score=130.49 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=115.9
Q ss_pred EEeCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHH
Q 041986 14 EERANSRTVILNRPHV--LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELF 91 (195)
Q Consensus 14 ~~~~~v~~i~l~~p~~--~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~ 91 (195)
+.++.|+.|.++.+-. .+..+....+.+.+.|++++.|+++|+|||+-+ |.|++....
T Consensus 305 ~~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as---------------- 364 (584)
T TIGR00705 305 DVQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS---------------- 364 (584)
T ss_pred CCCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------
Confidence 3567899999986642 233333445678899999999999999999986 445544321
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEE------ecCc------ccccccCCCchhhHhhh
Q 041986 92 RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF------AMPE------VLIGFHPDVGSSYYLSR 159 (195)
Q Consensus 92 ~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~------~~pe------~~~G~~p~~g~~~~l~r 159 (195)
+.+.+.+.++...+||+|+.++|.|.+||+.++++||.+++++.+.+ +.+. .++|+.|....+..+++
T Consensus 365 e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~ 444 (584)
T TIGR00705 365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELAN 444 (584)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCC
Confidence 01122333455678999999999999999999999999999998876 5442 46888876655544432
Q ss_pred ----------------------------cch-HH-----HHHHhhcCCCCCHHHHHhcCcccccc
Q 041986 160 ----------------------------LPG-HL-----GEYLGLTGATLSGEEMLFCGLATHYS 190 (195)
Q Consensus 160 ----------------------------~~g-~~-----a~~l~l~g~~~~a~ea~~~Glv~~vv 190 (195)
.++ .+ +.+.+..|+.++++||+++||||++-
T Consensus 445 ~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig 509 (584)
T TIGR00705 445 VSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG 509 (584)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC
Confidence 333 22 56778899999999999999999984
No 98
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.61 E-value=1.6e-14 Score=112.28 Aligned_cols=101 Identities=22% Similarity=0.200 Sum_probs=80.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV 98 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (195)
|+.|.++.+-... .+.++.+|.++|+.++.|+++++|+|++ +|.|.|+.... .+.+.+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~----------------~i~~~i 59 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE----------------EIYREI 59 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH----------------HHHHHH
Confidence 4566665432111 3678999999999999999999999999 58888886521 123355
Q ss_pred HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC
Q 041986 99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141 (195)
Q Consensus 99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p 141 (195)
+.+..++||+||+++|.|.|+|+.++++||.+++++.+.|+..
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence 6677889999999999999999999999999999999988643
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.59 E-value=1.2e-14 Score=108.44 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986 36 SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI 115 (195)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~ 115 (195)
...+.+.+.|+.++.++.+ .+.|.+ .|+++.. ...+.+.+..+|||+++.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~ins------pGG~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINS------PGGDVFA-------------------GLAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEEC------CCCCHHH-------------------HHHHHHHHHhcCCCEEEEEcch
Confidence 4667788888888776333 333444 4444322 1235566778899999999999
Q ss_pred hcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCch---------------hhHhhhcch---HHHHHHhhcCCCCCH
Q 041986 116 TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGS---------------SYYLSRLPG---HLGEYLGLTGATLSG 177 (195)
Q Consensus 116 ~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~---------------~~~l~r~~g---~~a~~l~l~g~~~~a 177 (195)
|.++|+.++++||.|++++++.|.++....+..+.... ...+.+..| ....+++..+..+++
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 99999999999999999999999997776555433211 222555556 234666666778999
Q ss_pred HHHHhcCccccc
Q 041986 178 EEMLFCGLATHY 189 (195)
Q Consensus 178 ~ea~~~Glv~~v 189 (195)
+||+++||||+|
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999986
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.53 E-value=1.1e-13 Score=107.52 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=73.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV 98 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (195)
|++|.++.+=. ....+|.++|+.++.|+++++|||+.. |.|+++... .++.
T Consensus 2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~ 52 (207)
T TIGR00706 2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY 52 (207)
T ss_pred EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence 56666655431 335789999999999999999999984 777777532 1233
Q ss_pred HHHhhCC--CcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC
Q 041986 99 YLVATYS--KPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141 (195)
Q Consensus 99 ~~l~~~~--~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p 141 (195)
+.+..++ ||+|+.++|.|.++|+.++++||.+++++++.++.-
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~i 97 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSI 97 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEee
Confidence 4455555 999999999999999999999999999999877663
No 101
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.51 E-value=6.7e-13 Score=100.51 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986 20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY 99 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (195)
..|.++. .+++...+.|.++|+++++++ ++.|++.=+ |.|+++.. ...+.+
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~~ 52 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIVD 52 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHHH
Confidence 4455543 356778888999999999875 788888775 66766653 223556
Q ss_pred HHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCch--------hhH------hhhcch---
Q 041986 100 LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGS--------SYY------LSRLPG--- 162 (195)
Q Consensus 100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~--------~~~------l~r~~g--- 162 (195)
.+..+|+|+|+.|+|.|.++|+.++++||++++++++.++.+++- +..+. ... +.+.-|
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 778899999999999999999999999999999999999998543 22222 111 122222
Q ss_pred HHHHHHhhcC-------------CCCCHHHHHhcCccccccCC
Q 041986 163 HLGEYLGLTG-------------ATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 163 ~~a~~l~l~g-------------~~~~a~ea~~~Glv~~vv~~ 192 (195)
..+..|+-.. ..++++||++.|++|.+.++
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 2344554444 37999999999999999875
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.41 E-value=1.3e-12 Score=102.41 Aligned_cols=90 Identities=14% Similarity=0.055 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM 112 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav 112 (195)
-+...+.+|.++|+.++.|+++++|||+..+..| ++.+++++ .+.++.+...+||+||.+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAYA 85 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEEe
Confidence 3567788999999999999999999999987666 55555543 223344556799999999
Q ss_pred cchhcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986 113 DGITMGGGAGIAVHASYRLATEKTVFAMPEV 143 (195)
Q Consensus 113 ~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~ 143 (195)
+| +.++|+.++++||.+++.+.+.++...+
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv 115 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGL 115 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeecc
Confidence 98 8899999999999999999999888543
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.16 E-value=1.1e-09 Score=82.23 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
.+++...+.|.++++.++++ +.+.|+|.=+ |.|+.+... ..+.+.+...++||++.
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~~i~~~~~pvv~~ 64 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQRIQQSKIPVIIY 64 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCcCEEEE
Confidence 36677888899999999864 5888888876 777777542 12455666789999999
Q ss_pred Ec---chhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCc--h------hhH------hhhcch---HHHHHHhhc
Q 041986 112 MD---GITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVG--S------SYY------LSRLPG---HLGEYLGLT 171 (195)
Q Consensus 112 v~---G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g--~------~~~------l~r~~g---~~a~~l~l~ 171 (195)
|+ |.|..+|..++++||.+++.+++.++...+-.+..+... . ... +.+.-| ..+.+++..
T Consensus 65 v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~ 144 (172)
T cd07015 65 VYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITK 144 (172)
T ss_pred EecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 99 999999999999999999999999999877543222000 0 111 112222 345667788
Q ss_pred CCCCCHHHHHhcCccccccCC
Q 041986 172 GATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 172 g~~~~a~ea~~~Glv~~vv~~ 192 (195)
...++++||++.|++|.++++
T Consensus 145 ~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 145 DLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred hcCcCHHHHHHcCCceeeeCC
Confidence 889999999999999999875
No 104
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.00 E-value=9.8e-09 Score=76.71 Aligned_cols=132 Identities=16% Similarity=0.089 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM 112 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav 112 (195)
++..+..++.+.|..++.++..+.|+|.=+ |.|+++.. ...+.+.+...++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence 467888999999999998877778777765 66666532 2235556667889999999
Q ss_pred cchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhh-----------------Hhhhcch---HHHHHHhh
Q 041986 113 DGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSY-----------------YLSRLPG---HLGEYLGL 170 (195)
Q Consensus 113 ~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~-----------------~l~r~~g---~~a~~l~l 170 (195)
.|.|.++|..+++++| .|++.+++.+.+....-+.. +...- .+.+.-| ....+++-
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~--g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 143 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL--GDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE 143 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 9999999999999999 68888888887654322211 10110 1111112 22234455
Q ss_pred cCCCCCHHHHHhcCccccc
Q 041986 171 TGATLSGEEMLFCGLATHY 189 (195)
Q Consensus 171 ~g~~~~a~ea~~~Glv~~v 189 (195)
.+..++++||++.||||++
T Consensus 144 ~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 144 RDTWLSAREAVEYGFADTI 162 (162)
T ss_pred CCccccHHHHHHcCCCCcC
Confidence 5666799999999999985
No 105
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.94 E-value=2.1e-08 Score=77.39 Aligned_cols=136 Identities=19% Similarity=0.121 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
.++..+...+...|..++.++..+-|.+.=+ |.|++... ...+.+.+...+.|+++.
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-------------------g~~I~d~i~~~~~~v~t~ 95 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTMQFIKPDVSTI 95 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCEEEE
Confidence 4678889999999998876544444444443 45555432 222444566778899999
Q ss_pred EcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhh------------------Hhhhcch---HHHHHH
Q 041986 112 MDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSY------------------YLSRLPG---HLGEYL 168 (195)
Q Consensus 112 v~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~------------------~l~r~~g---~~a~~l 168 (195)
+.|.|.+.|..++++++ .|++.+++.+.+....-+. .|-.. .+...-| ....++
T Consensus 96 ~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 172 (200)
T PRK00277 96 CIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKD 172 (200)
T ss_pred EEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999988743 5777777766665443111 11111 1122222 233445
Q ss_pred hhcCCCCCHHHHHhcCccccccCCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
+-.+..++|+||++.||+|+|+.+.
T Consensus 173 ~~~~~~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 173 TDRDNFMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred hhCCccccHHHHHHcCCccEEeecC
Confidence 5667789999999999999999763
No 106
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.88 E-value=1.3e-07 Score=75.36 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV 109 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I 109 (195)
.-+++++-.+...+.++.+.. .++-+|-|.-.++.+. |.+.+. ....+.+.+.+..+...++|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~-~~lPvV~lvDtpGa~~-g~~aE~-------------~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEK-FGRPVVTFINTAGAYP-GVGAEE-------------RGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCCcCC-CHhHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 456788888889888888876 3567776655443332 322210 1233455666777889999999
Q ss_pred EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch--HHHHHHhhcCCCCCHHHHHhcCccc
Q 041986 110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG--HLGEYLGLTGATLSGEEMLFCGLAT 187 (195)
Q Consensus 110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g--~~a~~l~l~g~~~~a~ea~~~Glv~ 187 (195)
+.|-|.|.|||......||++++.+++.++. .++-|++..+-+-.. ..+.+.+ .+++.++.+.|+||
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD 209 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVD 209 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCc
Confidence 9999999999888888999999999887765 222333433333212 3333333 77999999999999
Q ss_pred cccCC
Q 041986 188 HYSLS 192 (195)
Q Consensus 188 ~vv~~ 192 (195)
+|+|+
T Consensus 210 ~ii~e 214 (256)
T PRK12319 210 KVIPE 214 (256)
T ss_pred EecCC
Confidence 99975
No 107
>PRK10949 protease 4; Provisional
Probab=98.87 E-value=1.1e-07 Score=84.67 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=73.7
Q ss_pred eCCEEEEEEcCCC-----CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986 16 RANSRTVILNRPH-----VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90 (195)
Q Consensus 16 ~~~v~~i~l~~p~-----~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~ 90 (195)
.+.|+.|.++.+= ....++. +.+.+.|+++..|+++|+|||+-+ |.|+.....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~as--------------- 382 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTAS--------------- 382 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHHH---------------
Confidence 5678888886432 1223443 568888999999999999999997 555544321
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEec
Q 041986 91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140 (195)
Q Consensus 91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~ 140 (195)
+.+.+.+.++....||+|+.+.+.|..||+.++++||.+++.+.+..+.
T Consensus 383 -e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGS 431 (618)
T PRK10949 383 -EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGS 431 (618)
T ss_pred -HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceee
Confidence 1222233344567899999999999999999999999999998665443
No 108
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.87 E-value=5.6e-08 Score=75.43 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
.++..+..++.+.|..++..+..+.|.|.-+ |.|+++.. ...+.+.+...+.|+++.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~-------------------g~~I~d~i~~~~~~v~t~ 99 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTA-------------------GDAIYDTIQFIRPDVQTV 99 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHH-------------------HHHHHHHHHhcCCCcEEE
Confidence 4688999999999999987554455544443 56666543 123555666788899999
Q ss_pred EcchhcchhhHHhhhcC--EEEEeCCeEEecCcccc-cccCCCchh------------------hHhhhcch---HHHHH
Q 041986 112 MDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLI-GFHPDVGSS------------------YYLSRLPG---HLGEY 167 (195)
Q Consensus 112 v~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~-G~~p~~g~~------------------~~l~r~~g---~~a~~ 167 (195)
+.|.|.+.|..++++|| .|++.+++.|.+.+... |. ..|-. ..+.+.-| ....+
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 177 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK 177 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999 58999999999877542 21 11211 11222223 23455
Q ss_pred HhhcCCCCCHHHHHhcCccccccCC
Q 041986 168 LGLTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 168 l~l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
++-.+..++|+||++.||||+|+++
T Consensus 178 ~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 178 DTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHhcCccccHHHHHHcCCccEEcCc
Confidence 6667889999999999999999975
No 109
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.84 E-value=2.6e-07 Score=75.52 Aligned_cols=139 Identities=9% Similarity=0.028 Sum_probs=94.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV 109 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I 109 (195)
.-+++++-.....+.++.++. .++-+|-|--+.+.++ |.+.++ ....+.+.+.+..+....+|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~-f~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANK-FGLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 456889999999999998876 3566665555433332 322211 1233455566667788999999
Q ss_pred EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986 110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189 (195)
Q Consensus 110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~ea~~~Glv~~v 189 (195)
+.|-|.+.|||+.....||++++.++++++. .++-|.+..+-+-- .++.+ +....+++|+++++.|+||+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d~-~~a~~-aA~~~~ita~dL~~~giiD~i 267 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKDS-KKSLD-AAEALKITSEDLKVLGIIDEI 267 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcch-hhHHH-HHHHcCCCHHHHHhCCCCeEe
Confidence 9999999888876666799999999988765 22233443333321 22222 234568999999999999999
Q ss_pred cCC
Q 041986 190 SLS 192 (195)
Q Consensus 190 v~~ 192 (195)
+|.
T Consensus 268 i~E 270 (322)
T CHL00198 268 IPE 270 (322)
T ss_pred ccC
Confidence 985
No 110
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.81 E-value=9.9e-10 Score=90.03 Aligned_cols=169 Identities=14% Similarity=0.043 Sum_probs=138.4
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHHHH
Q 041986 18 NSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYS 96 (195)
Q Consensus 18 ~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~ 96 (195)
++..+.++ |+ .|..|.++.++|..-++.++.+..+++..+|+.. +.|++|.|..+.......-.+ ...-+..+
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fsp----a~~m~LlE 139 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSP----AHWMQLLE 139 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCH----HHHHHHHH
Confidence 67778887 44 6999999999999999999998888999999998 999999999998766554333 44456677
Q ss_pred HHHHHhhCCCcEEEEEcchhcchh--hHHhhhcCEEEEe--CCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhc
Q 041986 97 FVYLVATYSKPHVAIMDGITMGGG--AGIAVHASYRLAT--EKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLT 171 (195)
Q Consensus 97 l~~~l~~~~~p~Iaav~G~~~g~G--~~l~l~~D~~ia~--~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~ 171 (195)
++....+++.|+.+++||.+.-++ +.+.-+|+|++.. .....+..+...++.-+..-...+...+| ..+..-+--
T Consensus 140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d 219 (380)
T KOG1683|consen 140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALAD 219 (380)
T ss_pred HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhh
Confidence 888899999999999999998888 8999999999987 56666788888885433334444555567 666666778
Q ss_pred CCCCCHHHHHhcCccccccCC
Q 041986 172 GATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 172 g~~~~a~ea~~~Glv~~vv~~ 192 (195)
+.-++-.||++-|+++++.|.
T Consensus 220 ~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 220 GVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred ccCccHHHHHhhccchhccch
Confidence 889999999999999998873
No 111
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.79 E-value=7.2e-08 Score=72.69 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM 112 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav 112 (195)
++.....++...|..+..++..+.|++.-+ |.|+++..- ..+.+.+...+.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 577888999999999988766566666554 566665431 124445556789999999
Q ss_pred cchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhhH-----------------hhhcch---HHHHHHhh
Q 041986 113 DGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSYY-----------------LSRLPG---HLGEYLGL 170 (195)
Q Consensus 113 ~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~~-----------------l~r~~g---~~a~~l~l 170 (195)
.|.|.+.|..+++++| .|++.++++|.+.+...+..-. ...+ +....| ....+++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 7999999999998765443211 1111 111222 12344566
Q ss_pred cCCCCCHHHHHhcCccccc
Q 041986 171 TGATLSGEEMLFCGLATHY 189 (195)
Q Consensus 171 ~g~~~~a~ea~~~Glv~~v 189 (195)
.+.-++++||++.|++|+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 7888999999999999986
No 112
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.74 E-value=1.1e-07 Score=72.31 Aligned_cols=135 Identities=21% Similarity=0.157 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM 112 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav 112 (195)
++.++...+.+.|..++..+..+-+.|.=+ |.|+++.. ...+.+.+..++.|+++.+
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN----SpGG~v~~-------------------g~~i~~~i~~~~~~v~t~~ 81 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYIN----SPGGDVDA-------------------GLAIYDAIRSSKAPVTTVV 81 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE----ECEBCHHH-------------------HHHHHHHHHHSSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEc----CCCCccHH-------------------HHHHHHHHHhcCCCeEEEE
Confidence 588999999999888854333333322222 56677643 2235667778999999999
Q ss_pred cchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhhH-----------------hhhcch---HHHHHHhh
Q 041986 113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSYY-----------------LSRLPG---HLGEYLGL 170 (195)
Q Consensus 113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~-----------------l~r~~g---~~a~~l~l 170 (195)
.|.|.+.|..++++||. |++.+++.|.+.++..+... ..... +....| ....+++-
T Consensus 82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 159 (182)
T PF00574_consen 82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAERTGLSKEEIEELMD 159 (182)
T ss_dssp EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCS
T ss_pred eCccccceehhhhcCCcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 99999999999999999 89999999999888654432 11111 111112 12233444
Q ss_pred cCCCCCHHHHHhcCccccccCC
Q 041986 171 TGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 171 ~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
...-++++||++.|+||+|+.+
T Consensus 160 ~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 160 RDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp STEEEEHHHHHHHTSSSEEESS
T ss_pred CCccccHHHHHHcCCCCEeccC
Confidence 5556899999999999999864
No 113
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.72 E-value=9.5e-07 Score=72.20 Aligned_cols=137 Identities=9% Similarity=0.008 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV 109 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I 109 (195)
.-+++++-.....+.++.++. .++-+|-|.-..+.++ |.+.+. ....+.+.+.+..+....+|+|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~-f~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~I 193 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAER-FKMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVI 193 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEE
Confidence 456788888889888888876 4566666655433322 222221 1234456667777889999999
Q ss_pred EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch--HHHHHHhhcCCCCCHHHHHhcCccc
Q 041986 110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG--HLGEYLGLTGATLSGEEMLFCGLAT 187 (195)
Q Consensus 110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g--~~a~~l~l~g~~~~a~ea~~~Glv~ 187 (195)
+.|-|.|.|||......||++++.+++.++. .++-|++..+-+-.. ..+.+ -..++++++.+.|+||
T Consensus 194 sVViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD 262 (316)
T TIGR00513 194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLID 262 (316)
T ss_pred EEEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCe
Confidence 9999999777776556799999999887764 333334444433211 23333 2677899999999999
Q ss_pred cccCC
Q 041986 188 HYSLS 192 (195)
Q Consensus 188 ~vv~~ 192 (195)
+|+|.
T Consensus 263 ~II~e 267 (316)
T TIGR00513 263 SIIPE 267 (316)
T ss_pred EeccC
Confidence 99985
No 114
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.71 E-value=3.7e-07 Score=70.26 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM 112 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav 112 (195)
++..+...+.+.|..++..+..+-|.+.=+ |.|+++.. ...+.+.+...+.||++.+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a-------------------g~aI~d~i~~~~~~V~t~v 88 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA-------------------GFAIFNMIRFVKPKVFTIG 88 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhCCCCEEEEE
Confidence 677888899999988876334455555543 56666542 2235556777899999999
Q ss_pred cchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhhH------------------hhhcch---HHHHHHh
Q 041986 113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSYY------------------LSRLPG---HLGEYLG 169 (195)
Q Consensus 113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~------------------l~r~~g---~~a~~l~ 169 (195)
.|.|.+.|..++++||- |++.+++.+.+....-+.. |.+.- ....-| ....+++
T Consensus 89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~ 165 (197)
T PRK14512 89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDT 165 (197)
T ss_pred EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhh
Confidence 99999999999999985 8999998887765432221 11110 111112 2234455
Q ss_pred hcCCCCCHHHHHhcCccccccCC
Q 041986 170 LTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
-....++|+||++.||+|+|+++
T Consensus 166 ~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 166 DRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred hcCcccCHHHHHHcCCccEeecC
Confidence 56678999999999999999975
No 115
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.71 E-value=8e-07 Score=72.72 Aligned_cols=139 Identities=10% Similarity=0.050 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV 109 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I 109 (195)
.-+++++-.+...+.++.++. -++-+|-|.-+.+.+. |.+.++ ....+.+.+.+..+....+|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~-f~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEK-FGLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 456788888888888888875 4577776665444333 332221 1234566667778889999999
Q ss_pred EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986 110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189 (195)
Q Consensus 110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~ea~~~Glv~~v 189 (195)
+.|-|.+.|||......||++++.+++.++. .++-|++..+-+-.. .+.+.. ....++++++++.|+||+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~~~-~a~~aa-e~~~ita~~l~~~g~iD~I 264 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKDAS-KAPEAA-EAMKITAQDLKELGIIDEI 264 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcCch-hHHHHH-HHcCCCHHHHHHCCCceEe
Confidence 9999999888776666799999988887654 433444444444322 222222 2556899999999999999
Q ss_pred cCC
Q 041986 190 SLS 192 (195)
Q Consensus 190 v~~ 192 (195)
+|.
T Consensus 265 I~E 267 (319)
T PRK05724 265 IPE 267 (319)
T ss_pred ccC
Confidence 985
No 116
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.71 E-value=1.1e-06 Score=73.88 Aligned_cols=137 Identities=12% Similarity=0.058 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986 31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA 110 (195)
Q Consensus 31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia 110 (195)
-+++++-.....+.++.++. .++-+|-|.-+.+.+ .|.+.++ ....+.+.+.+..+....+|+|+
T Consensus 200 G~~~peGyRKAlR~mklAek-f~lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEK-FGFPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 46889999999999888876 356666555533332 2222221 23334566677778899999999
Q ss_pred EEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986 111 IMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHY 189 (195)
Q Consensus 111 av~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~v 189 (195)
.|-|.+.+||.....+||++++.+++.++.- .|.+.++.++....- ..+.+ ...++++++++.|+||+|
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ysVi------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~I 334 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYYVA------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEI 334 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEEec------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEe
Confidence 9999996666555557899999998876542 233333333333222 33333 348999999999999999
Q ss_pred cCC
Q 041986 190 SLS 192 (195)
Q Consensus 190 v~~ 192 (195)
+|.
T Consensus 335 I~E 337 (431)
T PLN03230 335 VPE 337 (431)
T ss_pred ccC
Confidence 985
No 117
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.65 E-value=1.8e-06 Score=76.87 Aligned_cols=139 Identities=12% Similarity=0.013 Sum_probs=95.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV 109 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I 109 (195)
.-++++.-.+...+.++.++. ..+-+|-|--..+.+. |...+. ....+.+.+.+..+....+|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAek-fgLPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence 456778888888888888876 3566665555433332 322222 1233456667777889999999
Q ss_pred EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986 110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189 (195)
Q Consensus 110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~ea~~~Glv~~v 189 (195)
+.|-|.|.|||+.....||++++.++++++. .++-|++..+-+-.. .+.+ +.....++|++++++|+||+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV-------isPEgaAsILwkd~~-~A~e-AAe~lkiTa~dL~~lGiiD~I 355 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAK-AAPK-AAEKLRITAQELCRLQIADGI 355 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEEe-------cCHHHHHHHHhcCcc-cHHH-HHHHcCCCHHHHHhCCCCeee
Confidence 9999999888887777899999999877554 333334444433222 1122 234568999999999999999
Q ss_pred cCC
Q 041986 190 SLS 192 (195)
Q Consensus 190 v~~ 192 (195)
+|.
T Consensus 356 IpE 358 (762)
T PLN03229 356 IPE 358 (762)
T ss_pred ccC
Confidence 985
No 118
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.61 E-value=1.4e-06 Score=67.16 Aligned_cols=137 Identities=13% Similarity=0.051 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
.++.++..++...|-.++.++..+-+.+.=+ |.|+++.. ...+.+.+...+.|+.+.
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv 94 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-------------------GLAIYDTMQFVKPDVHTI 94 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 4789999999999999875443444444333 45555432 123555677889999999
Q ss_pred EcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCch-hh-----------------Hhhhcch---HHHHHH
Q 041986 112 MDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGS-SY-----------------YLSRLPG---HLGEYL 168 (195)
Q Consensus 112 v~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~-~~-----------------~l~r~~g---~~a~~l 168 (195)
+-|.|.+.|..+++++| .|++.++++|.+.....|.. .|- .. .+...-| ....++
T Consensus 95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~ 172 (200)
T CHL00028 95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED 172 (200)
T ss_pred EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999 69999999999877654421 121 11 1111112 122444
Q ss_pred hhcCCCCCHHHHHhcCccccccCCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
+-....++|+||++.|+||+|+.+.
T Consensus 173 ~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 173 MERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred hhcCccCCHHHHHHcCCCcEEeecC
Confidence 5566679999999999999999764
No 119
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.59 E-value=8e-07 Score=73.22 Aligned_cols=104 Identities=15% Similarity=0.068 Sum_probs=69.0
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHH
Q 041986 16 RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLY 95 (195)
Q Consensus 16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (195)
.+.|+.|.++.+-..+ ....+.+++...++.+..+ +.|||+-+ |.|+....... ...
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~------------a~~--- 145 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL------------AAS--- 145 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH------------HHH---
Confidence 4678889888654222 2224445666666555432 57888876 55655543110 001
Q ss_pred HHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986 96 SFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV 143 (195)
Q Consensus 96 ~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~ 143 (195)
.+.++....||+++.+.+.|..||+.++++||.+++.+.+.++.-.+
T Consensus 146 -~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGV 192 (330)
T PRK11778 146 -QLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGV 192 (330)
T ss_pred -HHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeee
Confidence 12345567899999999999999999999999999999876665433
No 120
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.58 E-value=2e-06 Score=65.95 Aligned_cols=136 Identities=17% Similarity=0.081 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM 112 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav 112 (195)
++.....++...|..++.++..+-+.+.=+ |.|+++.. ...+.+.+...+.|+...+
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------g~~I~d~l~~~~~~v~t~~ 91 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITA-------------------GLAIYDTMQFIKPDVSTIC 91 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence 567788888888888876554444544443 55666532 1224445556667777778
Q ss_pred cchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhh---------------Hhhhcch---HHHHHHhhcC
Q 041986 113 DGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSY---------------YLSRLPG---HLGEYLGLTG 172 (195)
Q Consensus 113 ~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~---------------~l~r~~g---~~a~~l~l~g 172 (195)
-|.|.+.|..+++++| .|++.+++.|.+.+...|......-.. .+.+.-| ....+++-.+
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~ 171 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD 171 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 8999999998888765 699999999999776433211100000 0122222 2334556677
Q ss_pred CCCCHHHHHhcCccccccC
Q 041986 173 ATLSGEEMLFCGLATHYSL 191 (195)
Q Consensus 173 ~~~~a~ea~~~Glv~~vv~ 191 (195)
..++|+||++.||+|+|+.
T Consensus 172 ~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 172 FFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred ccCcHHHHHHcCCccEEec
Confidence 8899999999999999975
No 121
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.53 E-value=3.1e-06 Score=67.38 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV 109 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I 109 (195)
...++.+...++.++++....+..+-.+ +. +.|++... ..++.+.+.+++.+++
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~IdLi-i~------TpGG~v~A-------------------A~~I~~~l~~~~~~v~ 122 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPIDLI-IH------TPGGLVDA-------------------AEQIARALREHPAKVT 122 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceEEE-EE------CCCCcHHH-------------------HHHHHHHHHhCCCCEE
Confidence 3568889999999999988776555333 33 34555542 2235556778999999
Q ss_pred EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCC
Q 041986 110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDV 151 (195)
Q Consensus 110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~ 151 (195)
+.|+..|..+|..++++||.+++.+.+.++--+.++|..|..
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 999999999999999999999999999999999999988864
No 122
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.50 E-value=2e-06 Score=70.99 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=72.5
Q ss_pred CEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHH
Q 041986 18 NSRTVILNRPHV--LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLY 95 (195)
Q Consensus 18 ~v~~i~l~~p~~--~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (195)
.|+.|.++.+=. .+....-..+.+.+.|+.+..|++++.|+|.-+ |.|+....- +.+.
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as----------------~~i~ 119 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS----------------ELIA 119 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH----------------HHHH
Confidence 466666654321 011112245667888889999999999999986 677666431 1222
Q ss_pred HHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986 96 SFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV 143 (195)
Q Consensus 96 ~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~ 143 (195)
+.++++..-. |+++.|++.|..||+.+++++|.+++.+.+..+--.+
T Consensus 120 ~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGV 166 (317)
T COG0616 120 RALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGV 166 (317)
T ss_pred HHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeecee
Confidence 3344444444 9999999999999999999999999999886665443
No 123
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.44 E-value=1.7e-05 Score=63.82 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=95.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENN----SGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL 94 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~----~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~ 94 (195)
|..+-.+..-..-+++...-..+.++++.+.+| ....+|.+.-+ .|.-+.+-.. .+..+.+.+
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-----gGaRlqEg~~--------~L~~~a~i~ 127 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT-----GGVRLQEANA--------GLIAIAEIM 127 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC-----CCcChhhhHH--------HHHHHHHHH
Confidence 444444444466788888889999999999752 22456766663 4444432111 011111222
Q ss_pred HHHHHHHhhCCCcEEEEEcch--hcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H--HHHHHh
Q 041986 95 YSFVYLVATYSKPHVAIMDGI--TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H--LGEYLG 169 (195)
Q Consensus 95 ~~l~~~l~~~~~p~Iaav~G~--~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~--~a~~l~ 169 (195)
. ...++... +|+|+.+.|+ |.||+...+.+||++|+++++++.+.... ......| . ...+-.
T Consensus 128 ~-~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~-----------VIe~~~G~e~~~~~d~~ 194 (274)
T TIGR03133 128 R-AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRA 194 (274)
T ss_pred H-HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHH-----------HHHHhcCCCccCHHHhc
Confidence 2 22334444 9999999999 89999999999999999999888774221 1112222 1 234445
Q ss_pred hcCCCCCHHHHHhcCccccccCCC
Q 041986 170 LTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
+.++.+.++.....|++|.++++|
T Consensus 195 l~~~~lGG~~~~~sG~~D~~v~dd 218 (274)
T TIGR03133 195 LVWRTTGGKHRFLSGDADVLVEDD 218 (274)
T ss_pred ccccccchHhHhhcccceEEeCCH
Confidence 666777778888899999999875
No 124
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.40 E-value=1.1e-05 Score=63.04 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
.++.....++...|..++..+.-+-+.+.-+ |.|+++.. ...+.+.+...+.|+.+.
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyIN----SpGGsv~a-------------------GlaIyd~m~~~~~~V~tv 118 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYIN----SPGGSVYA-------------------GLGIYDTMQFISSDVATI 118 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEEE----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 4677888888887766654322233322222 44444432 122455677788899999
Q ss_pred EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhh-H-----------------hhhcch---HHHHHH
Q 041986 112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSY-Y-----------------LSRLPG---HLGEYL 168 (195)
Q Consensus 112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~-~-----------------l~r~~g---~~a~~l 168 (195)
+-|.|.+.|..+++++|. |++.+++.+.+....-|.. |.+. + +++.-| ....+.
T Consensus 119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~---G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~ 195 (221)
T PRK14514 119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ---GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD 195 (221)
T ss_pred EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999996 8999999999877653322 1111 0 111222 123444
Q ss_pred hhcCCCCCHHHHHhcCccccccCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
+-....++|+||++.||||+|+.+
T Consensus 196 ~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 196 SDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred hhcCccCCHHHHHHcCCccEEeec
Confidence 566777999999999999999875
No 125
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.39 E-value=1.4e-05 Score=61.66 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
.++.++..++...|-.++..+.-+-+.+.-+ |.|+|+.. ...+.+.+...+-|+...
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------GlaIyd~m~~~~~~V~Ti 91 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN----CPGGEVYA-------------------GLAIYDTMRYIKAPVSTI 91 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 4788888888888877775432222222222 44555432 123555677888899999
Q ss_pred EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhhH-----------------hhhcch---HHHHHHh
Q 041986 112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSYY-----------------LSRLPG---HLGEYLG 169 (195)
Q Consensus 112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~-----------------l~r~~g---~~a~~l~ 169 (195)
+.|.|.+.+..+++++|- |++.+++.+-+.....|.. +-+..+ +.+.-| ..-.+++
T Consensus 92 ~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~ 169 (201)
T PRK14513 92 CVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDM 169 (201)
T ss_pred EEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 999999999999999996 8999999999877654431 112211 111122 1223345
Q ss_pred hcCCCCCHHHHHhcCccccccCCCC
Q 041986 170 LTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
-....++|+||++.||||+|+++.+
T Consensus 170 ~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 170 ERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred ccCcccCHHHHHHcCCCcEEeccCC
Confidence 5566799999999999999997654
No 126
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.38 E-value=1.4e-05 Score=61.50 Aligned_cols=136 Identities=15% Similarity=0.057 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
.++.....++...|..++.++..+-+.+.=+ |.|+++.. ...+.+.+...+.|+...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYD-------------------GLGIFDTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 4788999999999999875443444444443 55555542 123555667788899999
Q ss_pred EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchh-hH-----------------hhhcch---HHHHHH
Q 041986 112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSS-YY-----------------LSRLPG---HLGEYL 168 (195)
Q Consensus 112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~-~~-----------------l~r~~g---~~a~~l 168 (195)
+-|.|.+.+..+++++|- |++.+++.+.+.....|.. |.. .+ +.+.-| ....++
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~---G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~ 166 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGAR---GQASDIRIQADEILFLKERLNTELSERTGQPLERIQED 166 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999985 8889999998877643321 111 00 111122 122344
Q ss_pred hhcCCCCCHHHHHhcCccccccCCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
+-....++|+||++.||+|+|+++.
T Consensus 167 ~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 167 TDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred hhcCcCCCHHHHHHcCCCcEEeccC
Confidence 5566679999999999999999764
No 127
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.30 E-value=3.3e-05 Score=62.89 Aligned_cols=149 Identities=14% Similarity=0.119 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNS----GVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL 94 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~----~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~ 94 (195)
|..+-.+..-..-+++......+.++++.+.++. .+-+|.+.-.| |.-+.+-.. ....+.+.
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~~--------~L~~~a~i- 135 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEANA--------GLAAIAEI- 135 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchHH--------HHHHHHHH-
Confidence 4445555555678899999999999999997754 26677776643 444432111 01111122
Q ss_pred HHHHHHHhhCCCcEEEEEcch--hcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch---HHHHHHh
Q 041986 95 YSFVYLVATYSKPHVAIMDGI--TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG---HLGEYLG 169 (195)
Q Consensus 95 ~~l~~~l~~~~~p~Iaav~G~--~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g---~~a~~l~ 169 (195)
...+..+... +|+|+.+.|+ |+||+...+.+||++|+++++.+++.... ......| -...+..
T Consensus 136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~-----------VIe~~~G~e~~d~~d~~ 203 (301)
T PRK07189 136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRA 203 (301)
T ss_pred HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHH-----------HHHHhcCCcccCHHHhc
Confidence 2222334444 9999999999 99999999999999999999888774221 1111111 1123333
Q ss_pred hcCCCCCHHHHHhcCccccccCCC
Q 041986 170 LTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
+.++.+.+......|.+|.++++|
T Consensus 204 ~vw~~lGG~h~~~sG~~D~~v~dd 227 (301)
T PRK07189 204 LVWRTTGGKHRYLSGLADALVDDD 227 (301)
T ss_pred ccccccCcceeeecccceEEeCCH
Confidence 334444444555678888888775
No 128
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.25 E-value=9.7e-05 Score=58.44 Aligned_cols=155 Identities=15% Similarity=0.038 Sum_probs=92.2
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986 16 RANSRTVILNRPHVLNALNTSMVALLTKQYESW-ENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL 94 (195)
Q Consensus 16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~-~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~ 94 (195)
++.-..+.=|.|. ..++.+--....+.+... +.+.++-+|.|.-. +.|-.|..-+ .....+.+
T Consensus 30 ~G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG~~~g~~aE-------------~~G~~~a~ 93 (238)
T TIGR03134 30 AGGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PSQAYGRREE-------------LLGINQAL 93 (238)
T ss_pred CCEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CCCCCCHHHH-------------HHHHHHHH
Confidence 3444444445554 267777777777777774 44456666655552 2233332222 23344455
Q ss_pred HHHHHHHh---hCCCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhh
Q 041986 95 YSFVYLVA---TYSKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGL 170 (195)
Q Consensus 95 ~~l~~~l~---~~~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l 170 (195)
.++++.+. ..+.|+|+.|-|.+.|||+ .+.+.+|.+++.+++ .++..++-+++..+.+-.. ...++.-
T Consensus 94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A-------~i~vm~~e~aa~I~~~~~~-~~~e~a~ 165 (238)
T TIGR03134 94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGA-------MVHVMDLESMARVTKRSVE-ELEALAK 165 (238)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCc-------EEEecCHHHHHHHHccCHh-HHHHHHH
Confidence 55555555 4569999999999998876 444457777766555 5555555555555544433 2222211
Q ss_pred --cCCCCCHHHHHhcCccccccCCCC
Q 041986 171 --TGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 171 --~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
.-...+...+.++|+||+|+|+.+
T Consensus 166 ~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 166 SSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred hhhhhccCHHHHHhCCCccEEeCCCC
Confidence 123467788999999999998653
No 129
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=98.15 E-value=0.00013 Score=59.24 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=89.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV 98 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (195)
|+...++..-..-++....-+.+.++++.+... .+-+|+++.. +|+-+.+=... +..+.+....+.
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~S-----GGARmQEg~~s--------L~qmak~saa~~ 200 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCAS-----GGARMQEGSLS--------LMQMAKISSALY 200 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECC-----CCccccccchh--------hhhhHHHHHHHH
Confidence 444555544467899999999999999999864 4778888874 44444321100 011111111111
Q ss_pred HHHhhCCCcEEEEEcchhcchhhHH-hhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCC---
Q 041986 99 YLVATYSKPHVAIMDGITMGGGAGI-AVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGAT--- 174 (195)
Q Consensus 99 ~~l~~~~~p~Iaav~G~~~g~G~~l-~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~--- 174 (195)
+....-.+|.|+.+.|+|.||+... ++.||++|+.+++.+++...++ ... .+|+.
T Consensus 201 ~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~----------t~ge~lpe 259 (296)
T CHL00174 201 DYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQ----------TLNKTVPE 259 (296)
T ss_pred HHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHH----------hcCCcCCc
Confidence 1123567999999999999997654 6679999998888887753211 111 12222
Q ss_pred --CCHHHHHhcCccccccCCCC
Q 041986 175 --LSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 175 --~~a~ea~~~Glv~~vv~~~~ 194 (195)
-+|+-.++.|+||.+|+..+
T Consensus 260 ~fq~ae~l~~~G~vD~iV~r~~ 281 (296)
T CHL00174 260 GSQAAEYLFDKGLFDLIVPRNL 281 (296)
T ss_pred ccccHHHHHhCcCceEEEcHHH
Confidence 24666788999999998754
No 130
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.07 E-value=0.00017 Score=58.83 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=92.8
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986 16 RANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL 94 (195)
Q Consensus 16 ~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~ 94 (195)
+|.-..|.-|.+. ..-+++...-+.+.++++.+... .+-+|.+...| |..+.+ .. ..+... ...
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE---gi-----~sL~~~-ak~ 183 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE---GL-----LSLMQM-AKT 183 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh---hh-----hHHHhH-HHH
Confidence 4433333444444 67899999999999999999764 58888888644 333222 00 001111 122
Q ss_pred HHHHHHHhhCCCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCC
Q 041986 95 YSFVYLVATYSKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGA 173 (195)
Q Consensus 95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~ 173 (195)
...+.++....+|.|+.+.|+|.||+. ..++.+|++++.+++.+++-..+ .+...++ .++ .-+
T Consensus 184 ~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~---e~l--pe~ 247 (292)
T PRK05654 184 SAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVR---EKL--PEG 247 (292)
T ss_pred HHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhh---hhh--hhh
Confidence 233445567789999999999999965 56777999999998888774331 1111111 111 111
Q ss_pred CCCHHHHHhcCccccccCCCC
Q 041986 174 TLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 174 ~~~a~ea~~~Glv~~vv~~~~ 194 (195)
--+++-+.+.|+||.|+++.+
T Consensus 248 ~~~ae~~~~~G~vD~Vv~~~e 268 (292)
T PRK05654 248 FQRAEFLLEHGAIDMIVHRRE 268 (292)
T ss_pred hcCHHHHHhCCCCcEEECHHH
Confidence 225666778999999998764
No 131
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.04 E-value=0.00021 Score=58.04 Aligned_cols=145 Identities=10% Similarity=0.131 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV 98 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (195)
|..+..+..-..-+++...-+.+.++++.+.. ..+-+|.+...|+ .-+.+=. ..+..+ ......+
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~-~~lPlV~l~dSgG-----aRmqEg~--------~sL~~~-ak~~~~~ 186 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALE-DNCPLIIFSASGG-----ARMQEAL--------LSLMQM-AKTSAAL 186 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHH-cCCCEEEEEcCCC-----cccccch--------hHHHhH-HHHHHHH
Confidence 44444444436788999999999999999976 4588888877543 3222210 011111 1222233
Q ss_pred HHHhhCCCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986 99 YLVATYSKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG 177 (195)
Q Consensus 99 ~~l~~~~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a 177 (195)
.++....+|.|+.+.|+|.||+. ..+..+|++++.+++.+++-..++ +....+ .+ +.-+--++
T Consensus 187 ~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~---e~--lpe~~q~a 250 (285)
T TIGR00515 187 AKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVR---EK--LPEGFQTS 250 (285)
T ss_pred HHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhc---Cc--cchhcCCH
Confidence 45667789999999999999964 566799999999999888843321 111111 11 11112255
Q ss_pred HHHHhcCccccccCCCC
Q 041986 178 EEMLFCGLATHYSLSAV 194 (195)
Q Consensus 178 ~ea~~~Glv~~vv~~~~ 194 (195)
+-+.+.|+||.|+++.+
T Consensus 251 e~~~~~G~vD~iv~~~~ 267 (285)
T TIGR00515 251 EFLLEHGAIDMIVHRPE 267 (285)
T ss_pred HHHHhCCCCcEEECcHH
Confidence 55778899999998864
No 132
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.98 E-value=0.00032 Score=61.42 Aligned_cols=137 Identities=13% Similarity=0.151 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccc--cchhHHHhhhcccHHHHHHHHHHHHHH
Q 041986 20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG--DVVGAYRMLKEGRVEECKELFRTLYSF 97 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~--dl~~~~~~~~~~~~~~~~~~~~~~~~l 97 (195)
..+..+..-..-+++......+.++++.+..+ .+-.|.+.- |+|. .+.+-... ...+.+.+. -
T Consensus 60 ~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~--------l~~~g~i~~-~ 124 (493)
T PF01039_consen 60 VVIAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES--------LMGMGRIFR-A 124 (493)
T ss_dssp EEEEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH--------HHHHHHHHH-H
T ss_pred EEEEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh--------hhhhHHHHH-H
Confidence 33444444467889999999999999999875 466776665 5555 44433221 112222222 2
Q ss_pred HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCC
Q 041986 98 VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLS 176 (195)
Q Consensus 98 ~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~ 176 (195)
..++.. .+|+|+++.|+|.|+|..++..||++|+.++ +.+.+... ...+ ..+|+.++
T Consensus 125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP--------------------~vv~-~~~Ge~~~ 182 (493)
T PF01039_consen 125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP--------------------RVVE-SATGEEVD 182 (493)
T ss_dssp HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH--------------------HHHH-HHHSSCTS
T ss_pred HHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc--------------------cccc-cccCcccc
Confidence 334555 9999999999999999999999999999987 88776522 1111 13568888
Q ss_pred HHHH-------HhcCccccccCCC
Q 041986 177 GEEM-------LFCGLATHYSLSA 193 (195)
Q Consensus 177 a~ea-------~~~Glv~~vv~~~ 193 (195)
.++. ...|.+|.+++++
T Consensus 183 ~~~lgG~~~h~~~sG~~d~v~~de 206 (493)
T PF01039_consen 183 SEELGGADVHAAKSGVVDYVVDDE 206 (493)
T ss_dssp HHHHHBHHHHHHTSSSSSEEESSH
T ss_pred chhhhhhhhhcccCCCceEEEech
Confidence 7654 3679999999875
No 133
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00026 Score=54.27 Aligned_cols=135 Identities=19% Similarity=0.100 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc
Q 041986 34 NTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD 113 (195)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~ 113 (195)
+..+...+...+..++..+..+-+.|.-+ |.|+++.. ...+.+.+...+.||...+-
T Consensus 37 ~~~~a~~i~aqll~Lea~~~~k~I~lyIN----SpGG~V~a-------------------G~AIydtm~~ik~~V~ti~~ 93 (200)
T COG0740 37 EDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTMQFIKPPVSTICM 93 (200)
T ss_pred chHHHHHHHHHHHHHHhcCCCCCeEEEEe----CCCcccch-------------------hHHHHHHHHhcCCCeEEEEe
Confidence 43455555555555554444454444433 44444432 11245567789999999999
Q ss_pred chhcchhhHHhhhcCEE--EEeCCeEEecCcccccccCCCchhhHh--hh-c--------------ch-HH--HHHHhhc
Q 041986 114 GITMGGGAGIAVHASYR--LATEKTVFAMPEVLIGFHPDVGSSYYL--SR-L--------------PG-HL--GEYLGLT 171 (195)
Q Consensus 114 G~~~g~G~~l~l~~D~~--ia~~~a~~~~pe~~~G~~p~~g~~~~l--~r-~--------------~g-~~--a~~l~l~ 171 (195)
|.+...|..|++++|.. ++.+++++-+....-|+. +. ++-+. ++ + -| .. -.+.+-.
T Consensus 94 G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~-G~-a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~dr 171 (200)
T COG0740 94 GQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQ-GQ-ASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDR 171 (200)
T ss_pred cHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCc-cC-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcc
Confidence 99999999999999985 888888887766652222 11 11110 01 1 11 00 1112234
Q ss_pred CCCCCHHHHHhcCccccccCCC
Q 041986 172 GATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 172 g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
..-++|+||++.||+|+|....
T Consensus 172 d~~msa~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 172 DTWMSAEEAKEYGLIDKVIESR 193 (200)
T ss_pred cccCCHHHHHHcCCcceecccc
Confidence 4458999999999999999764
No 134
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00038 Score=59.04 Aligned_cols=148 Identities=15% Similarity=0.181 Sum_probs=106.0
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHH
Q 041986 16 RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLY 95 (195)
Q Consensus 16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (195)
+..|..+.++ +.+++...+.+.+.++.++++. ...+|+.=+ ..| .+.+...
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ld----TPG-------------------Gl~~sm~ 75 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELD----TPG-------------------GLLDSMR 75 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEec----CCC-------------------chHHHHH
Confidence 3457777774 4589999999999999999754 455555432 111 2223566
Q ss_pred HHHHHHhhCCCcEEEEEc---chhcchhhHHhhhcCEEEEeCCeEEecCcccccc---cCCCc-hhhH------hhhcch
Q 041986 96 SFVYLVATYSKPHVAIMD---GITMGGGAGIAVHASYRLATEKTVFAMPEVLIGF---HPDVG-SSYY------LSRLPG 162 (195)
Q Consensus 96 ~l~~~l~~~~~p~Iaav~---G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~---~p~~g-~~~~------l~r~~g 162 (195)
++.+++.+.|.|++..|. +.|..+|..++++||+..+++.+.++-...-.+- .+... .... +++.-|
T Consensus 76 ~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~g 155 (436)
T COG1030 76 QIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERG 155 (436)
T ss_pred HHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcC
Confidence 788899999999999885 4699999999999999999999988875543222 11111 1111 233334
Q ss_pred ---HHHHHHhhcCCCCCHHHHHhcCccccccCC
Q 041986 163 ---HLGEYLGLTGATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 163 ---~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~ 192 (195)
..|.+++.....++++||++.|++|-+..+
T Consensus 156 RN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 156 RNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 357889999999999999999999977644
No 135
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.90 E-value=9.7e-05 Score=65.82 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986 36 SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI 115 (195)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~ 115 (195)
..+.++.++++++..|+.|++|||.-.. +.|..+..+ +.+.+.+..+....||++|..++.
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~ 136 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNY 136 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEccc
Confidence 3567899999999999999999999863 224443321 122233334556799999988876
Q ss_pred hcchhhHHhhhcCEEEEeCCeEEecC
Q 041986 116 TMGGGAGIAVHASYRLATEKTVFAMP 141 (195)
Q Consensus 116 ~~g~G~~l~l~~D~~ia~~~a~~~~p 141 (195)
+ -+|+.++.+||.+++.+.+.+++.
T Consensus 137 ~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 137 S-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred c-chhhhhhhhCCEEEECCCceEEee
Confidence 5 678999999999999998777553
No 136
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.83 E-value=2.7e-05 Score=57.63 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=31.8
Q ss_pred hhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986 102 ATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV 143 (195)
Q Consensus 102 ~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~ 143 (195)
....||++|.+++.+..+++.++.+||-+++.+.+.++...+
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv 44 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGV 44 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---E
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeCh
Confidence 468999999999999999999999999999999887776544
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.74 E-value=0.00069 Score=59.51 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=95.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHH
Q 041986 22 VILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL 100 (195)
Q Consensus 22 i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (195)
|.-|+|. ..-++++...+...+.++.+.+ .++-+|.|.-.++ |..|.+-+ .....+...+++.+
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~~E-------------~~g~~~~~a~~~~a 383 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVNQE-------------YGGIIRHGAKVLYA 383 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHHHH-------------HHHHHHHHHHHHHH
Confidence 3334443 4567999999999999998875 4677777766444 44443221 12344566677888
Q ss_pred HhhCCCcEEEEEcchhcchhhHHhh----hcCEEEEeCCeEEecCcccccccCCCchhhHhh-hcch-----HHH--HHH
Q 041986 101 VATYSKPHVAIMDGITMGGGAGIAV----HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLS-RLPG-----HLG--EYL 168 (195)
Q Consensus 101 l~~~~~p~Iaav~G~~~g~G~~l~l----~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~-r~~g-----~~a--~~l 168 (195)
+....+|.|+.+-|.+.|+|+.-+. .+|++++.+++.++. .++-++...+- +.+. ..+ .++
T Consensus 384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~ 456 (512)
T TIGR01117 384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKI 456 (512)
T ss_pred HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence 8889999999999999888654443 289888888776655 32222322222 1110 111 111
Q ss_pred -hhcCCCCCHHHHHhcCccccccCCCC
Q 041986 169 -GLTGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 169 -~l~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
-..-+..++..+.+.|+||.|+++.+
T Consensus 457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~ 483 (512)
T TIGR01117 457 AEYREEFANPYKAAARGYVDDVIEPKQ 483 (512)
T ss_pred HHHHHhhcCHHHHHhcCCCCeeEChHH
Confidence 01223457889999999999998754
No 138
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.63 E-value=8.1e-05 Score=59.64 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcC
Q 041986 93 TLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTG 172 (195)
Q Consensus 93 ~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g 172 (195)
.+.+=+..+.++++|+||.|=|.--+||+.-...+|.+++-++++|+. +.|.+.++.++.-- +++.+ ....
T Consensus 176 AIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~--~ka~e-AAe~ 246 (317)
T COG0825 176 AIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA--SKAKE-AAEA 246 (317)
T ss_pred HHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh--hhhHH-HHHH
Confidence 444444567789999999999998777776667779999999999875 33554444443322 22222 2345
Q ss_pred CCCCHHHHHhcCccccccCC
Q 041986 173 ATLSGEEMLFCGLATHYSLS 192 (195)
Q Consensus 173 ~~~~a~ea~~~Glv~~vv~~ 192 (195)
..++|++.+++|+||.|+|.
T Consensus 247 mkita~dLk~lgiID~II~E 266 (317)
T COG0825 247 MKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred cCCCHHHHHhCCCcceeccC
Confidence 68999999999999999986
No 139
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.62 E-value=0.003 Score=49.44 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 34 NTSMVALLTKQYESWENNSGVD--FVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~--~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
+.++...+...|-.++.++..+ .+-|-+.|+...+|--+... .....+.+.+...+-++...
T Consensus 50 ~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V~Tv 113 (222)
T PRK12552 50 GMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPVHTI 113 (222)
T ss_pred hHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCeEEE
Confidence 3448888888887776543222 34555555544444111100 01223555666777888899
Q ss_pred EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhhHhh------------------hcch---HHHHHH
Q 041986 112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSYYLS------------------RLPG---HLGEYL 168 (195)
Q Consensus 112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~l~------------------r~~g---~~a~~l 168 (195)
+-|.|.+.+..+++++|- |++.+++++-+.....|.. |.+.-+. ..-| ..-.+.
T Consensus 114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d 190 (222)
T PRK12552 114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD 190 (222)
T ss_pred EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999996 8899999999877654432 2221111 1111 011223
Q ss_pred hhcCCCCCHHHHHhcCccccccCCC
Q 041986 169 GLTGATLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 169 ~l~g~~~~a~ea~~~Glv~~vv~~~ 193 (195)
+-.-..++|+||++.||||+|+.+.
T Consensus 191 ~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 191 TDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred hcCCCcCCHHHHHHcCCCcEEeccC
Confidence 3344559999999999999999653
No 140
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.57 E-value=0.0024 Score=50.94 Aligned_cols=145 Identities=10% Similarity=0.107 Sum_probs=98.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV 98 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (195)
++...++-.-..-++....=..+.++++++-++ .+.+|+++.+ .|.-+.+-.-+ ..........+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aS-----GGARMQEg~lS---------LMQMaktsaAl 188 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSAS-----GGARMQEGILS---------LMQMAKTSAAL 188 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecC-----cchhHhHHHHH---------HHHHHHHHHHH
Confidence 455555555556788888888899999999875 4889999884 45555432111 11122334456
Q ss_pred HHHhhCCCcEEEEEcchhcch-hhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986 99 YLVATYSKPHVAIMDGITMGG-GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG 177 (195)
Q Consensus 99 ~~l~~~~~p~Iaav~G~~~g~-G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a 177 (195)
.++.....|.|+.+..+..|| .+++++..|+.++.+++.++|...++ .-+.....++ .| --++
T Consensus 189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LP--------eg-fQ~a 252 (294)
T COG0777 189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLP--------EG-FQTA 252 (294)
T ss_pred HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-------hhhhhcccCC--------cc-hhhH
Confidence 677889999999999999988 67999999999999999888864431 0111111111 11 1245
Q ss_pred HHHHhcCccccccCCCC
Q 041986 178 EEMLFCGLATHYSLSAV 194 (195)
Q Consensus 178 ~ea~~~Glv~~vv~~~~ 194 (195)
+-.++.|+||.||+..+
T Consensus 253 EfLlehG~iD~iv~R~e 269 (294)
T COG0777 253 EFLLEHGMIDMIVHRDE 269 (294)
T ss_pred HHHHHcCCceeeecHHH
Confidence 66779999999998654
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.42 E-value=0.0031 Score=55.43 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=67.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV 98 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (195)
|..+..+..-..-+++....+.+.++.+.+.++. +-+|.+.-.| |..+.+-... ...+.+.+...
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~~~--------l~~~~~~~~~~- 148 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAVDA--------LKGYGDIFYRN- 148 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccchh--------hhhHHHHHHHH-
Confidence 3344444333678899999999999999998754 6777777643 3333221000 00111111111
Q ss_pred HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCe-EEec
Q 041986 99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKT-VFAM 140 (195)
Q Consensus 99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a-~~~~ 140 (195)
....-.+|.|+++.|+|.||+.....+||++|+.+++ .+.+
T Consensus 149 -~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~ 190 (512)
T TIGR01117 149 -TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI 190 (512)
T ss_pred -HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence 1123469999999999999998777899999999864 4554
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.40 E-value=0.0091 Score=53.09 Aligned_cols=110 Identities=10% Similarity=0.014 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV 98 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (195)
|..+..+..-+.-+++....+.+.++++.+.+. .+-+|.|.-.++.+-.+ ..+.+.. ...+. .+..-.
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~~---------~~~~g-~if~~~ 198 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFPD---------RDHFG-RIFYNQ 198 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccch---------HhHHH-HHHHHH
Confidence 333333333367899999999999999999764 47788777744333211 1111100 00111 111122
Q ss_pred HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEec
Q 041986 99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAM 140 (195)
Q Consensus 99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~ 140 (195)
.++....+|.|+++.|+|.|||.....+||++|++++ +.+.+
T Consensus 199 ~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~ 241 (569)
T PLN02820 199 ARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL 241 (569)
T ss_pred HHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence 2355678999999999999999999999999998764 55555
No 143
>PRK10949 protease 4; Provisional
Probab=96.86 E-value=0.0083 Score=53.92 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986 36 SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI 115 (195)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~ 115 (195)
-.+.++.+++++++.|+.|++|||.-... .|.....+ +.+.+.+..+....||+||.....
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~----------------~eI~~ai~~fk~sGKpVvA~~~~~ 155 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM----------------QYIGKALREFRDSGKPVYAVGDSY 155 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH----------------HHHHHHHHHHHHhCCeEEEEecCc
Confidence 34568999999999999999999998631 12222211 122233444556789999864444
Q ss_pred hcchhhHHhhhcCEEEEeCCeEEecC
Q 041986 116 TMGGGAGIAVHASYRLATEKTVFAMP 141 (195)
Q Consensus 116 ~~g~G~~l~l~~D~~ia~~~a~~~~p 141 (195)
.-+++.|+.+||.+++.+.+.+++.
T Consensus 156 -~s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 156 -SQGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred -cchhhhhhhhCCEEEECCCceEEEe
Confidence 4568999999999999998777653
No 144
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.90 E-value=0.051 Score=47.61 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=67.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986 20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY 99 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (195)
....-+.+-+.-++..-..+.+.++.+.+.++. .-+|-|.- |.|..+.+-.... ..+ -.++.-..
T Consensus 94 ~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g-~P~i~l~d-----sgGari~~~v~~l--------~g~-g~iF~~~a 158 (526)
T COG4799 94 FVFANDFTVKGGTLGEMTAKKILRAQELAIENG-LPVIGLND-----SGGARIQEGVPSL--------AGY-GRIFYRNA 158 (526)
T ss_pred EEEEecCceecccccccccchHHHHHHHHHHcC-CCEEEEEc-----ccccccccCcccc--------ccc-hHHHHHHH
Confidence 333334444778888888888999998888754 45555544 3444443311100 011 12222222
Q ss_pred HHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEec
Q 041986 100 LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAM 140 (195)
Q Consensus 100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~ 140 (195)
+++.. +|.|++|.|+|.|||..+...||++|+.++ +++.+
T Consensus 159 ~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfl 199 (526)
T COG4799 159 RASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFL 199 (526)
T ss_pred HhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEe
Confidence 44455 999999999999999999999999999987 44443
No 145
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.86 E-value=0.15 Score=45.54 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986 31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA 110 (195)
Q Consensus 31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia 110 (195)
-.++.+-.+...+.++.... .++-+|-|.-..+ |..|.+-+. ....+...+++.++....+|.|+
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~-------------~G~~~~~a~l~~A~a~~~VP~is 444 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA-------------SGIAKAGAKMVMAVACAKVPKIT 444 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH-------------hhHHHHHHHHHHHHHhCCCCEEE
Confidence 35777777777777777664 5677776665322 444444432 24556777888899999999999
Q ss_pred EEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc-c-----------h-HH-H-HH-H-hhcCC
Q 041986 111 IMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-P-----------G-HL-G-EY-L-GLTGA 173 (195)
Q Consensus 111 av~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-~-----------g-~~-a-~~-l-~l~g~ 173 (195)
.+-|.+.|+|..-...-.+ .++-.|..|...+|..++.++...+.+. + . .. + ++ + -..-+
T Consensus 445 vi~g~a~G~g~~aM~g~~~---~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (569)
T PLN02820 445 IIVGGSFGAGNYGMCGRAY---SPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYER 521 (569)
T ss_pred EEECCcchHHHHHhcCcCC---CCCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHH
Confidence 9999999987655442221 2233444455666666555555555431 1 0 10 0 00 0 11122
Q ss_pred CCCHHHHHhcCccccccCCC
Q 041986 174 TLSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 174 ~~~a~ea~~~Glv~~vv~~~ 193 (195)
..++-.+-+.|++|.|+++.
T Consensus 522 ~~~p~~aa~~~~vD~VIdP~ 541 (569)
T PLN02820 522 EANPYYSTARLWDDGVIDPA 541 (569)
T ss_pred hCCHHHHHHcCCcCcccCHH
Confidence 34666788999999999875
No 146
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.33 Score=38.64 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
.++..+.+.+...|-.++..++-|=+.+.-+ |.|.++.. ...+.+.+..++-||-..
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vta-------------------glAIYDtMq~ik~~V~Ti 156 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTA-------------------GLAIYDTMQYIKPDVSTI 156 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccch-------------------hhhHHHHHHhhCCCceee
Confidence 4788888888888888876555565555543 44554421 112333444455555555
Q ss_pred EcchhcchhhHHhhhcCEEEEeCCeEEecCccccccc-CCCchh----hHhh--h-cch-H----------------HHH
Q 041986 112 MDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFH-PDVGSS----YYLS--R-LPG-H----------------LGE 166 (195)
Q Consensus 112 v~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~-p~~g~~----~~l~--r-~~g-~----------------~a~ 166 (195)
+-|.|.+-|..|+.+ .+..-++.+|..++=+. |.+|+. -..- + ++- + ...
T Consensus 157 c~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~ 231 (275)
T KOG0840|consen 157 CVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIE 231 (275)
T ss_pred ehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 557777665544433 34556666666665554 333321 1111 1 111 0 001
Q ss_pred HHhhcCCCCCHHHHHhcCccccccC
Q 041986 167 YLGLTGATLSGEEMLFCGLATHYSL 191 (195)
Q Consensus 167 ~l~l~g~~~~a~ea~~~Glv~~vv~ 191 (195)
+-+-.-+-++|+||++.||||+|+.
T Consensus 232 ~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 232 KDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred hhhcccccCCHHHHHHhcchhhhhc
Confidence 1122334489999999999999985
No 147
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.00 E-value=0.21 Score=43.89 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=89.5
Q ss_pred EEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986 21 TVILNRPHV-LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY 99 (195)
Q Consensus 21 ~i~l~~p~~-~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (195)
-|.-|+|.. .-.++++-.+...+.++.... .++-+|.|.-. +.|..|-.-+ .....+...+++.
T Consensus 297 Giian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~E-------------~~g~~~~ga~~~~ 361 (493)
T PF01039_consen 297 GIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEAE-------------RAGIIRAGARLLY 361 (493)
T ss_dssp EEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHHH-------------HTTHHHHHHHHHH
T ss_pred EEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchhh-------------hcchHHHHHHHHH
Confidence 344456542 226999999999988887776 56778877753 3343333222 2355667778999
Q ss_pred HHhhCCCcEEEEEcchhcchhhHHhhhc----CEEEEeCCeEEecCcccccccCCCchhhHhhhc-ch--H---------
Q 041986 100 LVATYSKPHVAIMDGITMGGGAGIAVHA----SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-PG--H--------- 163 (195)
Q Consensus 100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~~----D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-~g--~--------- 163 (195)
++..+.+|+|..+-|.+.|+|+...... |++++.+++.++ +.++.++...+.+. .- .
T Consensus 362 a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~ 434 (493)
T PF01039_consen 362 ALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQ 434 (493)
T ss_dssp HHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHH
T ss_pred HHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHH
Confidence 9999999999999999999887555555 677666655554 44434444333321 11 0
Q ss_pred HHHHHhh-cCCCCCHHHHHhcCccccccCCCC
Q 041986 164 LGEYLGL-TGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 164 ~a~~l~l-~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
....+-- .-+.-++..+...|++|.++++.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~ 466 (493)
T PF01039_consen 435 RAEKIAEYEDELSSPYRAASRGYVDDIIDPAE 466 (493)
T ss_dssp HHHHHHHHHHHHSSHHHHHHTTSSSEESSGGG
T ss_pred HHHHHHHHHHhcCCHHHHHhcCCCCCccCHHH
Confidence 1111111 112257889999999999998754
No 148
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=84.76 E-value=11 Score=32.72 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=91.9
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHH
Q 041986 22 VILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL 100 (195)
Q Consensus 22 i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (195)
|.-|+|+ ..-++..+.-..-.+-.+... +..+-.|.+...++ |..|.+.+.. .+......|...
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G-fm~g~~~e~~-------------gIaK~gAklv~a 417 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG-FMVGRAAEAG-------------GIAKHGAKLVYA 417 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC-ccccchhhhh-------------chhhhhhhhhhh
Confidence 4445655 334555555555554444444 35688887777655 8888877642 344556678888
Q ss_pred HhhCCCcEEEEEcchhcchhhH---HhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc-----ch--HHHHHHhh
Q 041986 101 VATYSKPHVAIMDGITMGGGAG---IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-----PG--HLGEYLGL 170 (195)
Q Consensus 101 l~~~~~p~Iaav~G~~~g~G~~---l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-----~g--~~a~~l~l 170 (195)
.....+|-|..+.|.+.||-+. -.+.-|+.++.+.+.+++-..+ ++...+.+. .. ....+.
T Consensus 418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~-- 488 (536)
T KOG0540|consen 418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEK-- 488 (536)
T ss_pred hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHH--
Confidence 8899999999999999997655 4477788888888777664321 122222222 22 222333
Q ss_pred cCCCCCHHHHHhcCccccccCCCC
Q 041986 171 TGATLSGEEMLFCGLATHYSLSAV 194 (195)
Q Consensus 171 ~g~~~~a~ea~~~Glv~~vv~~~~ 194 (195)
.|.++.+ ...||+|.++|+..
T Consensus 489 f~npy~a---~~Rg~~D~II~p~~ 509 (536)
T KOG0540|consen 489 FGNPYYA---AARGWDDGIIDPSD 509 (536)
T ss_pred hcCccHH---HHhhccccccChhH
Confidence 2666654 56799999988753
No 149
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=82.63 E-value=5.7 Score=32.34 Aligned_cols=53 Identities=25% Similarity=0.414 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhc
Q 041986 41 LTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITM 117 (195)
Q Consensus 41 l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~ 117 (195)
+.++|+.+++|++.+++|+-|. -|.+-++ ... ++... ...+||+|+.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGE-----iGG~aEe-----------~AA-------~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGE-----IGGPAEE-----------EAA-------EYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCccccEEEEEec-----CCCcHHH-----------HHH-------HHHHH-hccCCCEEEEEeccCC
Confidence 4478888888999999998885 2222222 111 22223 3355999999999875
No 150
>smart00250 PLEC Plectin repeat.
Probab=81.42 E-value=1.3 Score=24.36 Aligned_cols=19 Identities=47% Similarity=0.403 Sum_probs=17.4
Q ss_pred hcCCCCCHHHHHhcCcccc
Q 041986 170 LTGATLSGEEMLFCGLATH 188 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~ 188 (195)
.+|+++|-.||++.||+|.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 3899999999999999986
No 151
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=79.83 E-value=13 Score=32.92 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=91.9
Q ss_pred EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHH
Q 041986 19 SRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSF 97 (195)
Q Consensus 19 v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l 97 (195)
|..|- |.|. ..-+++.+..+.-.+-+ ++....++-.|.|.- -..|..|-+-+. ....+....|
T Consensus 326 VGiIA-Nqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d-~pGFm~G~~~E~-------------~giik~Gakl 389 (526)
T COG4799 326 VGIIA-NQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVD-TPGFMPGTDQEY-------------GGIIKHGAKL 389 (526)
T ss_pred EEEEe-cCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeC-CCCCCCChhHHh-------------ChHHHhhhHH
Confidence 44444 5554 45678877777766666 444335566665543 256777776653 3566677789
Q ss_pred HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh-cch--HH-HH-H-----
Q 041986 98 VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR-LPG--HL-GE-Y----- 167 (195)
Q Consensus 98 ~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r-~~g--~~-a~-~----- 167 (195)
+.++..+.+|.|..+-|.+.|+|......-.+ .++-.|..|..+++..-+-|+...+.| .+. .. .. +
T Consensus 390 ~~A~aeatVPkitvI~rkayGga~~~M~~~~~---~~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~ 466 (526)
T COG4799 390 LYAVAEATVPKITVITRKAYGGAYYVMGGKAL---GPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRK 466 (526)
T ss_pred HhhHhhccCCeEEEEecccccceeeeecCccC---CCceeEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHH
Confidence 99999999999999999999998654432222 144455555556565433334443332 211 11 11 1
Q ss_pred -Hh-hcCCC-CCHHHHHhcCccccccCCC
Q 041986 168 -LG-LTGAT-LSGEEMLFCGLATHYSLSA 193 (195)
Q Consensus 168 -l~-l~g~~-~~a~ea~~~Glv~~vv~~~ 193 (195)
+. ..-+. ..+--|-+.|++|.|+++.
T Consensus 467 ~~~~eY~~~~~~p~~aa~r~~iD~vI~p~ 495 (526)
T COG4799 467 QLIAEYEEQFSNPYYAAERGYIDAVIDPA 495 (526)
T ss_pred HHHHHHHHhccchHHHHHhCCCCcccCHH
Confidence 00 00111 3444566789999998864
No 152
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=77.80 E-value=7 Score=32.19 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHhcCC---CceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986 34 NTSMVALLTKQYESWENNS---GVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA 110 (195)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~~---~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia 110 (195)
+.....++.++++.+.... .+.+|||.=. |+.++++... +-..+.+++..+|.|+|+
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RG------GGs~eDL~~F--------------N~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRG------GGSIEDLWAF--------------NDEEVARAIAASPIPVIS 112 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecC------CCChHHhccc--------------ChHHHHHHHHhCCCCEEE
Confidence 3456677888888886543 4666654432 3333332211 122477789999999999
Q ss_pred EEcchhcchhhHHh-hhcCEEEEeCC
Q 041986 111 IMDGITMGGGAGIA-VHASYRLATEK 135 (195)
Q Consensus 111 av~G~~~g~G~~l~-l~~D~~ia~~~ 135 (195)
+| ||-.- +.++ +.+|+|..+|.
T Consensus 113 aI-GHe~D--~ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 113 AI-GHETD--FTIADFVADLRAPTPT 135 (319)
T ss_pred ec-CCCCC--chHHHHHHHhhCCCHH
Confidence 76 33221 2333 67777777664
No 153
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=76.43 E-value=7.4 Score=33.72 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM 112 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav 112 (195)
-......++.++++.+...+++.+|||.=.| +-++++... +-..+.+++..+|.|+|++|
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RGG------Gs~eDL~~F--------------n~e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRGG------GSLEDLWSF--------------NDEKVARAIFLSKIPIISAV 226 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecCC------CCHHHhhhc--------------CcHHHHHHHHcCCCCEEEec
Confidence 3455677888888888765556676554332 223332221 12247778899999999976
Q ss_pred cchhcchhhHHh-hhcCEEEEeCC--eEEecCc
Q 041986 113 DGITMGGGAGIA-VHASYRLATEK--TVFAMPE 142 (195)
Q Consensus 113 ~G~~~g~G~~l~-l~~D~~ia~~~--a~~~~pe 142 (195)
||-.- +.++ +.+|+|..++. +.+..|.
T Consensus 227 -GHe~D--~ti~D~vAd~ra~TPtaaae~~~p~ 256 (432)
T TIGR00237 227 -GHETD--FTISDFVADLRAPTPSAAAEIVSPN 256 (432)
T ss_pred -CcCCC--ccHHHHhhhccCCCcHHHHHHhCcc
Confidence 22211 2233 77788877763 3444443
No 154
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=75.69 E-value=0.96 Score=25.97 Aligned_cols=19 Identities=42% Similarity=0.407 Sum_probs=16.5
Q ss_pred hcCCCCCHHHHHhcCcccc
Q 041986 170 LTGATLSGEEMLFCGLATH 188 (195)
Q Consensus 170 l~g~~~~a~ea~~~Glv~~ 188 (195)
-+|++++-++|++.||+|+
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4899999999999999986
No 155
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=70.51 E-value=15 Score=29.12 Aligned_cols=140 Identities=15% Similarity=0.069 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEE--eCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH---HHHhhC
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIK--GNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV---YLVATY 104 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~--~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~~~ 104 (195)
...+....-..|.++...+=.+..-+-+|+- ..+..+ ...++...+...+..+. ......
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~---------------grreEllGi~~alAhla~a~a~AR~~ 104 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAY---------------GRREELLGINQALAHLAKAYALARLA 104 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccc---------------chHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 5778877777777666544322223333322 221111 12233334444433333 344568
Q ss_pred CCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCC--CCHHHHH
Q 041986 105 SKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGAT--LSGEEML 181 (195)
Q Consensus 105 ~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~--~~a~ea~ 181 (195)
.-|+|+.+.|.+++||| .-.+.+|-.++-+++.+. .-+.. +..+..++.=..-.++.-+--+ ++-+.-.
T Consensus 105 GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~-------vM~~~-s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~ 176 (234)
T PF06833_consen 105 GHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIH-------VMGKP-SAARVTKRPVEELEELAKSVPVFAPGIENYA 176 (234)
T ss_pred CCCeEEEEecccccHHHHHHHHHhcchhcCCCCeee-------cCChH-HhHHHhhcCHHHHHHHhhcCCCcCCCHHHHH
Confidence 89999999999999987 667999998876633322 21111 3344444322222333322222 5667777
Q ss_pred hcCccccccCC
Q 041986 182 FCGLATHYSLS 192 (195)
Q Consensus 182 ~~Glv~~vv~~ 192 (195)
++|.++++++.
T Consensus 177 ~lG~l~~l~~~ 187 (234)
T PF06833_consen 177 KLGALDELWDG 187 (234)
T ss_pred HhccHHHHhcc
Confidence 88988888873
No 156
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=67.22 E-value=26 Score=25.31 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchh
Q 041986 41 LTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGIT 116 (195)
Q Consensus 41 l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~ 116 (195)
+.+.++.+.+|++.++|++.-.+ +. - +.+.+..++.... ||+|+..-|..
T Consensus 42 ~~d~l~~~~~D~~t~~I~ly~E~~~d------~-------------------~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 42 FADLLEYLAEDPDTRVIVLYLEGIGD------G-------------------RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp HHHHHHHHCT-SS--EEEEEES--S-------H-------------------HHHHHHHHHHCCC-S-EEEEE----
T ss_pred HHHHHHHHhcCCCCCEEEEEccCCCC------H-------------------HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 66777777778888888877653 11 0 1233344455555 99999999874
No 157
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=67.16 E-value=71 Score=26.39 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=63.5
Q ss_pred CCCCCCHHHHHHHHHHH-HHHhcCCCceEE-EEEeCCCceeccccc-hhHHHhh----hc--------ccHHHHHHHHHH
Q 041986 29 VLNALNTSMVALLTKQY-ESWENNSGVDFV-VIKGNGRSFCAGGDV-VGAYRML----KE--------GRVEECKELFRT 93 (195)
Q Consensus 29 ~~N~~~~~~~~~l~~~l-~~~~~~~~~~~v-vl~~~g~~F~~G~dl-~~~~~~~----~~--------~~~~~~~~~~~~ 93 (195)
..|.++++.+.+-.+.+ .++...+.-++. +|-|..+.|--+-+. ..+.... .. .++++-. .
T Consensus 121 a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~----~ 196 (311)
T PF06258_consen 121 APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPP----E 196 (311)
T ss_pred CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcH----H
Confidence 35999999888876666 444444444554 444444666555441 1111110 00 0111111 1
Q ss_pred HHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCccc-----ccccCCCchhhHhhh
Q 041986 94 LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVL-----IGFHPDVGSSYYLSR 159 (195)
Q Consensus 94 ~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~-----~G~~p~~g~~~~l~r 159 (195)
....+..... +.+-+...++.-.+--..++-.||.+++++|+.=.+.|+- +++++..+...++.|
T Consensus 197 ~~~~L~~~~~-~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r 266 (311)
T PF06258_consen 197 AEAALRELLK-DNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRR 266 (311)
T ss_pred HHHHHHHhhc-CCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHH
Confidence 2222222221 2233322355555556789999999999998876666643 445544333334333
No 158
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=64.62 E-value=18 Score=31.38 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcc
Q 041986 35 TSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDG 114 (195)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G 114 (195)
...-.++.++++.+.+..++.++|+.=. |+-++++-.. +-..+.+++..+++|+|++| |
T Consensus 175 ~~A~~eIv~aI~~an~~~~~DvlIVaRG------GGSiEDLW~F--------------NdE~vaRAi~~s~iPvISAV-G 233 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVDVLIVARG------GGSIEDLWAF--------------NDEIVARAIAASRIPVISAV-G 233 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCCEEEEecC------cchHHHHhcc--------------ChHHHHHHHHhCCCCeEeec-c
Confidence 3455667777777776666766655432 3334433221 22247788999999999987 3
Q ss_pred hhcchhhHHh-hhcCEEEEeCC--eEEecCc
Q 041986 115 ITMGGGAGIA-VHASYRLATEK--TVFAMPE 142 (195)
Q Consensus 115 ~~~g~G~~l~-l~~D~~ia~~~--a~~~~pe 142 (195)
|-. -+.|+ +.+|+|-.++. +.+..|.
T Consensus 234 HEt--D~tL~DfVAD~RApTPTaAAE~~vP~ 262 (440)
T COG1570 234 HET--DFTLADFVADLRAPTPTAAAELVVPD 262 (440)
T ss_pred cCC--CccHHHhhhhccCCCchHHHHHhCCC
Confidence 321 13344 67777777663 3444443
No 159
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=61.89 E-value=34 Score=28.48 Aligned_cols=15 Identities=40% Similarity=0.631 Sum_probs=12.7
Q ss_pred hCCCcEEEEEcchhc
Q 041986 103 TYSKPHVAIMDGITM 117 (195)
Q Consensus 103 ~~~~p~Iaav~G~~~ 117 (195)
...||+|+..-|...
T Consensus 250 ~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 250 PIKKPVVSFIAGITA 264 (317)
T ss_pred cCCCcEEEEEecCCC
Confidence 368999999999874
No 160
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=61.48 E-value=44 Score=22.22 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=33.2
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 12 LVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 12 ~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+++.+++..+.++.| ++.....++.+.+..+-...+.+.+++--.+
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4678889999999765 4666667777777665333457888887665
No 161
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=61.21 E-value=45 Score=22.09 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=34.7
Q ss_pred eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
++.++..+++.++.+..+ ++.....++.+.+..+..++..+.|++--.+
T Consensus 4 ~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 577888999999998754 4555566677777665543567788887665
No 162
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=56.33 E-value=51 Score=22.28 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=39.0
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--------ceEEEEEeCC
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSG--------VDFVVIKGNG 63 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~--------~~~vvl~~~g 63 (195)
+..++.+++.++.++.| ++.....++.+.+.+...... .+.|||--.+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 45788999999999776 688888999999988876554 7899988765
No 163
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=55.53 E-value=44 Score=24.65 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcc
Q 041986 41 LTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMG 118 (195)
Q Consensus 41 l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g 118 (195)
..++|....+|+++++|++-+.+++ ....+.. ..+...+..... ...++|+|+.+.|-..-
T Consensus 61 ~~~~l~~~~~Dp~v~vIlvd~~~G~----g~~~~~A-----------~~l~~a~~~~~~--~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 61 RNEALEIEAADPEVKVILVDIVGGI----GSCEDPA-----------AGLIPAIKEAKA--EGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHTSTTESEEEEEEESSS----SSHHHHH-----------HHHHHHHSHCTH--TTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHhcCCCccEEEEEecccc----CchHHHH-----------HHHHHHHHhccc--cCCCCcEEEEeeeecCC
Confidence 6677888888999999999884321 2222211 122222111111 34789999999887654
No 164
>PLN02522 ATP citrate (pro-S)-lyase
Probab=52.41 E-value=45 Score=30.36 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=12.5
Q ss_pred CCCcEEEEEcchhc
Q 041986 104 YSKPHVAIMDGITM 117 (195)
Q Consensus 104 ~~~p~Iaav~G~~~ 117 (195)
..||+|+..-|.+.
T Consensus 249 ~~KPVVa~kaGrsa 262 (608)
T PLN02522 249 VSKPVVAWVSGTCA 262 (608)
T ss_pred CCCCEEEEeccCCC
Confidence 78999999999876
No 165
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=50.63 E-value=61 Score=26.72 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=11.9
Q ss_pred CCCcEEEEEcchhc
Q 041986 104 YSKPHVAIMDGITM 117 (195)
Q Consensus 104 ~~~p~Iaav~G~~~ 117 (195)
..||+|+..-|...
T Consensus 232 ~~KPVV~lk~Grs~ 245 (300)
T PLN00125 232 TEKPVVAFIAGLTA 245 (300)
T ss_pred CCCCEEEEEecCCC
Confidence 38999999998874
No 166
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=48.89 E-value=53 Score=25.80 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=44.1
Q ss_pred cceEEEEEeCCEEEEEEcCCCC-------CCCCCHHHHH---HHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHH
Q 041986 8 QIHVLVEERANSRTVILNRPHV-------LNALNTSMVA---LLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAY 76 (195)
Q Consensus 8 ~~~v~~~~~~~v~~i~l~~p~~-------~N~~~~~~~~---~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~ 76 (195)
.+.+.-+-+..|+.+||..... .-++.-.... .+......+-.|+++|.+|++|.- +..-+|--+..+.
T Consensus 16 GdY~vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~ 95 (225)
T PRK00964 16 GDYVVGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALH 95 (225)
T ss_pred ceeEeCCCCCceEEEEccccccccchhhcCceeecccccccccHHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 3445555677899999976542 1122222222 266777777778999999999987 5555565555543
No 167
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=47.95 E-value=41 Score=29.05 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc
Q 041986 34 NTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD 113 (195)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~ 113 (195)
......++.++++.+.... +.+|||.=. |+.++++... +-..+.+++..+|.|+|++|
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RG------GGS~eDL~~F--------------n~e~v~~ai~~~~~Pvis~I- 231 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARG------GGSLEDLWAF--------------NDEAVARAIAASRIPVISAV- 231 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecC------CCCHHHhhcc--------------CcHHHHHHHHcCCCCEEEec-
Confidence 3456777888888876533 455544322 2223332211 11247778899999999976
Q ss_pred chhcchhhHHh-hhcCEEEEeCC
Q 041986 114 GITMGGGAGIA-VHASYRLATEK 135 (195)
Q Consensus 114 G~~~g~G~~l~-l~~D~~ia~~~ 135 (195)
||-.= ..++ +.+|.|..+|.
T Consensus 232 GHE~D--~tl~D~vAd~ra~TPt 252 (438)
T PRK00286 232 GHETD--FTIADFVADLRAPTPT 252 (438)
T ss_pred cCCCC--ccHHHHhhhccCCChH
Confidence 33211 2233 67777777664
No 168
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=47.87 E-value=80 Score=20.87 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHH-hhCCCcEEEEEcchh
Q 041986 38 VALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLV-ATYSKPHVAIMDGIT 116 (195)
Q Consensus 38 ~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~p~Iaav~G~~ 116 (195)
-+++.++|.++..++++..|+++-. +.+...+.++.+ .....|+|..+.+.-
T Consensus 27 ~ee~~~~l~~l~~~~~~gIIii~e~---------------------------~~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVGIIIITED---------------------------LAEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEHH---------------------------HHTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHHhcCCCccEEEeeHH---------------------------HHHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 4567888888887788999988862 111222222222 467999999997764
Q ss_pred c
Q 041986 117 M 117 (195)
Q Consensus 117 ~ 117 (195)
-
T Consensus 80 ~ 80 (95)
T PF01990_consen 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 169
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=46.37 E-value=1.3e+02 Score=25.37 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 31 NALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
..|+++.+.+|.+...+.-.++++.+||||-
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVItH 108 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVITH 108 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEeC
Confidence 5789999999999998887777767777665
No 170
>PRK13556 azoreductase; Provisional
Probab=44.27 E-value=1e+02 Score=23.49 Aligned_cols=79 Identities=11% Similarity=-0.018 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh----cccHHHHHHHHHHHHHHHHHHhhCC
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK----EGRVEECKELFRTLYSFVYLVATYS 105 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (195)
.|+.|..+.+.+.+.+..... +..+.++--....| .-.|...+..... ....+..+........+...+...+
T Consensus 15 ~~S~s~~l~~~~~~~~~~~~~--~~~V~~~DL~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD 91 (208)
T PRK13556 15 EQAVSVKLYEAFLASYKEAHP--NDTVVELDLYKEEL-PYVGVDMINGTFKAGKGFELTEEEAKAVAVADKYLNQFLEAD 91 (208)
T ss_pred CCcHHHHHHHHHHHHHHHhCC--CCeEEEEeCCCCCC-CCCCHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHCC
Confidence 389999999998888876532 34455554443334 2244433321110 0011122334445556777888888
Q ss_pred CcEEEE
Q 041986 106 KPHVAI 111 (195)
Q Consensus 106 ~p~Iaa 111 (195)
..+|+.
T Consensus 92 ~iVi~~ 97 (208)
T PRK13556 92 KVVFAF 97 (208)
T ss_pred EEEEec
Confidence 888775
No 171
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=42.95 E-value=56 Score=23.12 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=28.7
Q ss_pred EEEEEcCCCCCCC--CC----------HHHHHHHHHHHHHH--hcCCCceEEEEEeCC
Q 041986 20 RTVILNRPHVLNA--LN----------TSMVALLTKQYESW--ENNSGVDFVVIKGNG 63 (195)
Q Consensus 20 ~~i~l~~p~~~N~--~~----------~~~~~~l~~~l~~~--~~~~~~~~vvl~~~g 63 (195)
..|+.+-|.+... .+ ..++.++.+.+.+. ...++++.|||.|.|
T Consensus 26 ~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 26 QRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 4566666776543 12 25666667777666 556789999999965
No 172
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=42.36 E-value=56 Score=20.87 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccc
Q 041986 35 TSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70 (195)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~ 70 (195)
.+.+..|.+.++.+..+..-.+.|+||.|..-..|.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~ 44 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc
Confidence 466777888888888777678889999996666665
No 173
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=41.68 E-value=1.8e+02 Score=24.01 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
..+.+..... .-.+.+-+.++...|+.+.. ....++||||+.
T Consensus 68 ~~~~~~~h~~-~~~~~~hl~~~y~~~~~i~~-~~~DG~IITGAp 109 (302)
T PRK05368 68 HLLRIDSHES-KNTPAEHLENFYCTFEDIKD-EKFDGLIITGAP 109 (302)
T ss_pred EEEecCCcCC-CCCCHHHHHHhccCHHHhcc-CCCCEEEEcCCC
Confidence 3444444433 34567888999999999975 568999999974
No 174
>PRK14053 methyltransferase; Provisional
Probab=39.26 E-value=77 Score=24.19 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=43.5
Q ss_pred cceEEEEEeCCEEEEEEcCCCC---CCCCCHHHHH---HHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHH
Q 041986 8 QIHVLVEERANSRTVILNRPHV---LNALNTSMVA---LLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAY 76 (195)
Q Consensus 8 ~~~v~~~~~~~v~~i~l~~p~~---~N~~~~~~~~---~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~ 76 (195)
.+.+.-+-+..|+.+|+..... .-++...... .+......+-.|+++|.+|++|.. +..-+|--+..+.
T Consensus 13 GdY~vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~ 88 (194)
T PRK14053 13 GDYTVGNPESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIH 88 (194)
T ss_pred ceEEeCCCCCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 3345555667899999876431 1122222222 266677777778999999999987 5666666665543
No 175
>PRK13555 azoreductase; Provisional
Probab=37.74 E-value=1.4e+02 Score=22.99 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh----cccHHHHHHHHHHHHHHHHHHhhCC
Q 041986 30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK----EGRVEECKELFRTLYSFVYLVATYS 105 (195)
Q Consensus 30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (195)
.++++.++.+.+.+.+....-+.++..+=|...+ |. -+|-..+..... ....+...........+.+.+..++
T Consensus 15 ~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~--~p-~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AD 91 (208)
T PRK13555 15 EQAVSSKMYETFVSTYKEANPNTEITELDLFALD--LP-YYGNIAISGGYKRSQGMELTAEEEKAVATVDQYLNQFLEAD 91 (208)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC--CC-cCCHHHHHhhccCCCcccCCHHHHHHHHHHHHHHHHHHHcC
Confidence 5799999999999998886533344444444433 32 222222211111 0011112344455667778888888
Q ss_pred CcEEEE
Q 041986 106 KPHVAI 111 (195)
Q Consensus 106 ~p~Iaa 111 (195)
+.+|+.
T Consensus 92 ~lvi~~ 97 (208)
T PRK13555 92 KVVFAF 97 (208)
T ss_pred EEEEEc
Confidence 888774
No 176
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=36.24 E-value=2.4e+02 Score=23.14 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=63.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCceeccccchhHHHh-----hhcccHH----HHHHH
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSG-VDFVVIKGNGRSFCAGGDVVGAYRM-----LKEGRVE----ECKEL 90 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~-~~~vvl~~~g~~F~~G~dl~~~~~~-----~~~~~~~----~~~~~ 90 (195)
++.|+... |-++...+....+++.+.--.+. .-+|++-|..+.|.---|-...... .+..... ..++.
T Consensus 131 ilpi~Gs~--h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRT 208 (329)
T COG3660 131 ILPINGSP--HNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRT 208 (329)
T ss_pred eeeccCCC--CcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCC
Confidence 56666654 88899999989888888742333 4445555555777765554332111 0100000 00001
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEcch--hcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986 91 FRTLYSFVYLVATYSKPHVAIMDGI--TMGGGAGIAVHASYRLATEKTVFAMPEV 143 (195)
Q Consensus 91 ~~~~~~l~~~l~~~~~p~Iaav~G~--~~g~G~~l~l~~D~~ia~~~a~~~~pe~ 143 (195)
-...+.+++. +.+--.+..-|+. -..--..++.++|++|++.|+.=-..|+
T Consensus 209 p~~~~s~l~~--~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEA 261 (329)
T COG3660 209 PDTVKSILKN--NLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEA 261 (329)
T ss_pred cHHHHHHHHh--ccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHH
Confidence 1111222211 2334444555665 3334577889999999988775555444
No 177
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=35.82 E-value=1.4e+02 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 31 NALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
.-++++.+.+|.+.++..-+++++.++|+|.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 4589999999999988764555666665554
No 178
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=35.79 E-value=2.2e+02 Score=22.39 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCc
Q 041986 26 RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65 (195)
Q Consensus 26 ~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~ 65 (195)
.++....++.+.++++.+.+..+. ..+.|+++|.|..
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~~ 49 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGSF 49 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCcc
Confidence 333346799999999999988876 5789999986643
No 179
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=35.76 E-value=1.2e+02 Score=19.36 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=28.9
Q ss_pred EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 13 VEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 13 ~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
..+.+++..+.+..+ ++.....++.+.+.....+. .+.+++-..+
T Consensus 3 ~~~~~~~~ii~l~G~-----l~~~~~~~~~~~~~~~~~~~-~~~viid~~~ 47 (99)
T cd07043 3 VEERGGVLVVRLSGE-----LDAATAPELREALEELLAEG-PRRLVLDLSG 47 (99)
T ss_pred eEEECCEEEEEEece-----ecccchHHHHHHHHHHHHcC-CCEEEEECCC
Confidence 445678888888654 44455566777666554433 6788887765
No 180
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=35.55 E-value=1.4e+02 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 31 NALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
.-++++.+.+|.+.+++.-.++++..+|+|.
T Consensus 83 ~~mt~~dw~~la~~I~~~~~~~~~~GiVVtH 113 (349)
T TIGR00520 83 QDMNEEVLLKLAKGINELLASDDYDGIVITH 113 (349)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 4578888888888887765555566665554
No 181
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=34.65 E-value=92 Score=28.03 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=44.0
Q ss_pred CCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhh
Q 041986 52 SGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126 (195)
Q Consensus 52 ~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~ 126 (195)
|++-++|-|-..=-+..|.+...+. ..+.+...+-+.+..+.++.+.++.+|+|.++|-+..---.++...
T Consensus 323 P~~~VlVaTvraLK~hgg~~~~~l~----~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I 393 (557)
T PRK13505 323 PDAVVIVATVRALKMHGGVAKDDLK----EENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAAL 393 (557)
T ss_pred CCEEEEEeehHHHHHcCCCChhhcc----ccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 4444444443333345555554432 2344445566677777888888999999999998877665555443
No 182
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=34.44 E-value=1.2e+02 Score=24.67 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|- |.+|+....++.+.+.....+.. +.|+++++
T Consensus 157 lliLDEPt--~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH 195 (293)
T COG1131 157 LLILDEPT--SGLDPESRREIWELLRELAKEGG-VTILLSTH 195 (293)
T ss_pred EEEECCCC--cCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCC
Confidence 46788886 99999999999999999987544 56777765
No 183
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=34.43 E-value=1e+02 Score=24.13 Aligned_cols=44 Identities=30% Similarity=0.247 Sum_probs=27.9
Q ss_pred ceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchh
Q 041986 54 VDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGIT 116 (195)
Q Consensus 54 ~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~ 116 (195)
+.++||||+. +.|+ |..++. ....+.+.+....|+++..+-||-
T Consensus 60 y~gfvIsGS~~dAf~---d~dWI~----------------KLcs~~kkld~mkkkvlGICFGHQ 104 (245)
T KOG3179|consen 60 YDGFVISGSKHDAFS---DADWIK----------------KLCSFVKKLDFMKKKVLGICFGHQ 104 (245)
T ss_pred hceEEEeCCcccccc---cchHHH----------------HHHHHHHHHHhhccceEEEeccHH
Confidence 5667777765 5565 333322 334466677778888888887763
No 184
>smart00463 SMR Small MutS-related domain.
Probab=34.09 E-value=98 Score=19.52 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCc
Q 041986 35 TSMVALLTKQYESWENNSG-VDFVVIKGNGRS 65 (195)
Q Consensus 35 ~~~~~~l~~~l~~~~~~~~-~~~vvl~~~g~~ 65 (195)
.+.+..|.+.++.+..... -.+.|+||.|..
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~ 43 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGKH 43 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccCC
Confidence 4677778888888876554 478899999854
No 185
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=32.04 E-value=1.4e+02 Score=22.54 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|+....++.+.+.++..+.+ +.|++++.
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH 199 (218)
T cd03255 161 IILADEPT--GNLDSETGKEVMELLRELNKEAG-TTIVVVTH 199 (218)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcC-CeEEEEEC
Confidence 46778886 99999999999999998865333 45666554
No 186
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=31.86 E-value=1.6e+02 Score=22.84 Aligned_cols=39 Identities=13% Similarity=0.310 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+..+.. +.|++++.
T Consensus 174 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH 212 (236)
T cd03267 174 ILFLDEPT--IGLDVVAQENIRNFLKEYNRERG-TTVLLTSH 212 (236)
T ss_pred EEEEcCCC--CCCCHHHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 56788886 99999999999999998865333 45666654
No 187
>TIGR02514 type_III_yscP type III secretion system needle length determinant. Members of this family include YscP of the Yersinia type III secretion system and equivalent proteins in other animal pathogen bacterial type III secretion systems. The model describes the conserved C-terminal region. N-terminal regions are poorly conserved and variable in length with some low-complexity sequence.
Probab=31.63 E-value=1.2e+02 Score=21.67 Aligned_cols=57 Identities=7% Similarity=0.012 Sum_probs=41.9
Q ss_pred CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
-....|++.++++...|.|-.....-.+.-..-.+|.+.|.++.-+..+++.|..-.
T Consensus 53 Lg~~eI~I~~~~g~l~Vei~a~~~~~qiL~qaR~eL~eRLqRl~p~q~vrl~i~~q~ 109 (129)
T TIGR02514 53 LGGLEIRIARDSGGLQVEILASPASSQLLQQARQELLERLQRLYPGQPVRLDLSQQA 109 (129)
T ss_pred CCCeEEEEEccCCeEEEEEecChhHHHHHHHHHHHHHHHHHhhCCCCceEEEeeccc
Confidence 345578999999999999975544444556677889999999976666777765543
No 188
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=30.90 E-value=3.6e+02 Score=23.46 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=29.6
Q ss_pred eeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHh
Q 041986 66 FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVA 102 (195)
Q Consensus 66 F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 102 (195)
||.|+||..+........++.++.+..++...++.+.
T Consensus 90 yC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~ 126 (429)
T KOG0595|consen 90 YCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLH 126 (429)
T ss_pred eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999887766677777888887777666655
No 189
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=30.66 E-value=1.5e+02 Score=23.61 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=32.1
Q ss_pred EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 13 VEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 13 ~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.+++|+.|.++ .++....++|.++++.+... +++.+||-=-
T Consensus 60 ~~~~~~IGYi~i~------~F~~~~~~~l~~a~~~l~~~-~~~~LIlDLR 102 (256)
T cd07561 60 VDGGKKVGYLVYN------SFTSGYDDELNQAFAEFKAQ-GVTELVLDLR 102 (256)
T ss_pred eeCCCcEEEEEEC------ccccchHHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 4456789999984 45656788999999999864 5788876543
No 190
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=30.59 E-value=80 Score=21.32 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
++.+-..+|.+.+..++...+++.+|+|-.
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv~ 31 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTVP 31 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEEc
Confidence 678889999999999998888899888875
No 191
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.57 E-value=1.5e+02 Score=22.42 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..... +.+|+.+.
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH 190 (214)
T cd03297 152 LLLLDEPF--SALDRALRLQLLPELKQIKKNLN-IPVIFVTH 190 (214)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-cEEEEEec
Confidence 46778885 89999999999999998865323 34555553
No 192
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=30.45 E-value=94 Score=24.60 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=40.8
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchh
Q 041986 14 EERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVG 74 (195)
Q Consensus 14 ~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~ 74 (195)
++..+|.+++=|-.++.|++. ....+|.+....++....+++.+=| --.|.+|.|+..
T Consensus 135 eetk~V~ivlEnMAGqGn~vG-~tfeelk~ii~~Ikdk~RigVClDT--CH~FaaGyDI~T 192 (281)
T KOG3997|consen 135 EETKNVIIVLENMAGQGNSVG-GTFEELKFIIGKIKDKSRIGVCLDT--CHTFAAGYDIRT 192 (281)
T ss_pred HhccceEEEeecccCCCCccc-ccHHHHHHHHHhhcchhhheeeHhh--hhhhccccccch
Confidence 445567777777777889888 4567788888888765555554432 257899999864
No 193
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=30.41 E-value=1.6e+02 Score=22.10 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+ + +.|++.+.
T Consensus 155 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~-~tvi~~sH 192 (211)
T cd03225 155 ILLLDEPT--AGLDPAGRRELLELLKKLKAE-G-KTIIIVTH 192 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-C-CEEEEEeC
Confidence 46778886 899999999999999888653 3 35555553
No 194
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=30.26 E-value=2e+02 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeC
Q 041986 31 NALNTSMVALLTKQYESWENNSGVDFV-VIKGN 62 (195)
Q Consensus 31 N~~~~~~~~~l~~~l~~~~~~~~~~~v-vl~~~ 62 (195)
.-++++.+.+|.+.+.+.-.+ ++.++ |.+|+
T Consensus 131 ~~mtp~~W~~La~~I~~~~~~-~~dGvVVtHGT 162 (419)
T PRK04183 131 ENMTPEYWVEIAEAVYEEIKN-GADGVVVAHGT 162 (419)
T ss_pred hhCCHHHHHHHHHHHHHHhhc-cCCeEEEecCC
Confidence 457788888888887765443 34444 44444
No 195
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=30.20 E-value=2.6e+02 Score=21.67 Aligned_cols=116 Identities=14% Similarity=0.001 Sum_probs=63.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh---cccHHHHHHHHHHHH
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK---EGRVEECKELFRTLY 95 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~---~~~~~~~~~~~~~~~ 95 (195)
|+.|+=+ |...++.+..+.+++.+.+....-++++-..=|.... -.-+|-..+..... .......+.......
T Consensus 4 vL~I~as-~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~---iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd 79 (202)
T COG1182 4 VLVIKAS-PLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEP---IPHLDEELLAAWFKPQAGEGTAEEKEALARSD 79 (202)
T ss_pred EEEEecC-CCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCC---CcccCHHHHhcccCCccCCCCHHHHHHHHHHH
Confidence 5555543 3357999999999999999887655544444343332 12233333221111 000123345566777
Q ss_pred HHHHHHhhCCCcEEEEEcchhcchh--hHHhhhcCEEEEeCCeEEecCc
Q 041986 96 SFVYLVATYSKPHVAIMDGITMGGG--AGIAVHASYRLATEKTVFAMPE 142 (195)
Q Consensus 96 ~l~~~l~~~~~p~Iaav~G~~~g~G--~~l~l~~D~~ia~~~a~~~~pe 142 (195)
.++..+....|.||++ +-.... ..|-.--|++ +...-+|...|
T Consensus 80 ~l~~ef~aAD~vVi~~---PM~Nf~iPa~LK~yiD~i-~~aGkTFkYte 124 (202)
T COG1182 80 KLLEEFLAADKVVIAA---PMYNFNIPAQLKAYIDHI-AVAGKTFKYTE 124 (202)
T ss_pred HHHHHHHhcCeEEEEe---cccccCCCHHHHHHHHHH-hcCCceEEecc
Confidence 8888888999999886 111211 2344455653 33444555433
No 196
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.13 E-value=1.6e+02 Score=22.74 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.+ +.+++.+.
T Consensus 151 llllDEP~--~gLD~~~~~~l~~~l~~~~~~~~-~tiii~sh 189 (232)
T cd03300 151 VLLLDEPL--GALDLKLRKDMQLELKRLQKELG-ITFVFVTH 189 (232)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 46678886 99999999999999998865323 35555554
No 197
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=29.96 E-value=1.9e+02 Score=25.15 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHHhhCCCcEEEEEcchhc
Q 041986 97 FVYLVATYSKPHVAIMDGITM 117 (195)
Q Consensus 97 l~~~l~~~~~p~Iaav~G~~~ 117 (195)
..++... .||+|+..-|..-
T Consensus 223 aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 223 TAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred HHHHHcC-CCCEEEEecCCCh
Confidence 4444444 8999999988863
No 198
>PRK06091 membrane protein FdrA; Validated
Probab=29.90 E-value=2e+02 Score=25.98 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=16.1
Q ss_pred HHHHHHhhCCCcEEEEEcchhc
Q 041986 96 SFVYLVATYSKPHVAIMDGITM 117 (195)
Q Consensus 96 ~l~~~l~~~~~p~Iaav~G~~~ 117 (195)
+++..+..+.||+|+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 4445555669999999988654
No 199
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.73 E-value=1.6e+02 Score=22.15 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.. ..+++.+.
T Consensus 149 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH 187 (211)
T cd03298 149 VLLLDEPF--AALDPALRAEMLDLVLDLHAETK-MTVLMVTH 187 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEec
Confidence 46678885 89999999999999998865333 34555543
No 200
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=29.69 E-value=1.7e+02 Score=21.47 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|....+.+.+.+.++..+.. ..+++++.
T Consensus 118 llllDEP~--~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sh 156 (180)
T cd03214 118 ILLLDEPT--SHLDIAHQIELLELLRRLARERG-KTVVMVLH 156 (180)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678885 89999999999999998865323 35555554
No 201
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=29.68 E-value=1.7e+02 Score=22.28 Aligned_cols=39 Identities=8% Similarity=0.161 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+..+.. +.+|+.+.
T Consensus 162 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH 200 (221)
T TIGR02211 162 LVLADEPT--GNLDNNNAKIIFDLMLELNRELN-TSFLVVTH 200 (221)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678886 89999999999999998865333 45555554
No 202
>PF12170 DNA_pol3_tau_5: DNA polymerase III tau subunit V interacting with alpha; InterPro: IPR021029 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF00004 from PFAM. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. The extreme C-terminal region of this domain 5 is the part which interacts with the alpha subunit of the DNA polymerase III holoenzyme [, ]. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 2AYA_A.
Probab=29.43 E-value=2.2e+02 Score=20.59 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=31.8
Q ss_pred EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 13 VEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 13 ~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.++.++-..+++ +|...+..+.....+|.++|...-. ..++..|.-+.
T Consensus 47 ~~~~~~~v~L~L-~~~q~HL~~~~a~~~L~~ALs~~~g-~~i~L~I~~~~ 94 (142)
T PF12170_consen 47 KEQEDDQVCLHL-RPSQKHLNNDSAQEQLQQALSEYLG-EPIKLSIEEGD 94 (142)
T ss_dssp EEE-SSEEEEEE--GGGTTT--HHHHHHHHHHHHHHHS-S--EEEEEE--
T ss_pred HhccCCEEEEEE-ChhhHhhCCHHHHHHHHHHHHHHhC-CCEEEEEEECC
Confidence 456666667888 4455788899999999999999875 46888876654
No 203
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=29.24 E-value=2.9e+02 Score=21.99 Aligned_cols=54 Identities=11% Similarity=0.221 Sum_probs=38.1
Q ss_pred CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCce
Q 041986 7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66 (195)
Q Consensus 7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F 66 (195)
.|..|.+..-|.+. .++..+.++++.++.+.+.+..+... .+++-|+.|.|+.|
T Consensus 4 ~~~rillkLsGe~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 4 KYMRILLKLSGEAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred ceEEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 34456666555543 23234679999999999999999864 68888888877443
No 204
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=29.21 E-value=2e+02 Score=20.79 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++.++ + ..+|+++.
T Consensus 103 illlDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sh 140 (163)
T cd03216 103 LLILDEPT--AALTPAEVERLFKVIRRLRAQ-G-VAVIFISH 140 (163)
T ss_pred EEEEECCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 45677885 899999999999999888643 3 35555554
No 205
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.19 E-value=1.7e+02 Score=21.28 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++.. . +.+++++.
T Consensus 117 llllDEP~--~gLD~~~~~~l~~~l~~~~~--~-~tii~~sh 153 (171)
T cd03228 117 ILILDEAT--SALDPETEALILEALRALAK--G-KTVIVIAH 153 (171)
T ss_pred EEEEECCC--cCCCHHHHHHHHHHHHHhcC--C-CEEEEEec
Confidence 56778885 89999999999999988853 3 56666664
No 206
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=29.18 E-value=1.8e+02 Score=22.05 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++.+... ..+++++.
T Consensus 149 llllDEPt--~~LD~~~~~~~~~~l~~~~~~~~-~tii~vsh 187 (213)
T TIGR01277 149 ILLLDEPF--SALDPLLREEMLALVKQLCSERQ-RTLLMVTH 187 (213)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678885 89999999999999998865333 34555543
No 207
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=28.89 E-value=1.1e+02 Score=22.62 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhCCCcEEEEEcchhc
Q 041986 93 TLYSFVYLVATYSKPHVAIMDGITM 117 (195)
Q Consensus 93 ~~~~l~~~l~~~~~p~Iaav~G~~~ 117 (195)
...++++......+|+++.+.|+-+
T Consensus 69 ~~~~~i~~~~~~~~pilgiC~G~q~ 93 (188)
T cd01741 69 KLKELIRQALAAGKPVLGICLGHQL 93 (188)
T ss_pred HHHHHHHHHHHCCCCEEEECccHHH
Confidence 3445666666778999998888743
No 208
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.88 E-value=1.8e+02 Score=22.13 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|- +.+|......+.+.+.++..+... .||+.+.
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tvi~~tH 190 (220)
T cd03265 152 VLFLDEPT--IGLDPQTRAHVWEYIEKLKEEFGM-TILLTTH 190 (220)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHHhcCC-EEEEEeC
Confidence 46778885 999999999999999988654333 4555554
No 209
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.52 E-value=1.9e+02 Score=22.95 Aligned_cols=39 Identities=13% Similarity=0.435 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+-++.|. .++|++++.|+.+.+..++++ ..--+++|-.
T Consensus 157 vmLFDEPT--SALDPElv~EVL~vm~~LA~e-GmTMivVTHE 195 (240)
T COG1126 157 VMLFDEPT--SALDPELVGEVLDVMKDLAEE-GMTMIIVTHE 195 (240)
T ss_pred EEeecCCc--ccCCHHHHHHHHHHHHHHHHc-CCeEEEEech
Confidence 36678886 899999999999999999874 4566666654
No 210
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=28.44 E-value=1.8e+02 Score=22.37 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.. +.|++++.
T Consensus 135 lllLDEPt--~gLD~~~~~~l~~~l~~~~~~~~-~tii~~sH 173 (230)
T TIGR01184 135 VLLLDEPF--GALDALTRGNLQEELMQIWEEHR-VTVLMVTH 173 (230)
T ss_pred EEEEcCCC--cCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678885 89999999999999988765333 35555553
No 211
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=28.42 E-value=1.8e+02 Score=22.32 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.. +.||+++.
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g-~tvii~sH 204 (233)
T PRK11629 166 LVLADEPT--GNLDARNADSIFQLLGELNRLQG-TAFLVVTH 204 (233)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeC
Confidence 46778885 89999999999999998864333 45555554
No 212
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=28.29 E-value=15 Score=21.38 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=14.8
Q ss_pred hhcchHHHHHHhhcCCCCCHHHHHhcCcc
Q 041986 158 SRLPGHLGEYLGLTGATLSGEEMLFCGLA 186 (195)
Q Consensus 158 ~r~~g~~a~~l~l~g~~~~a~ea~~~Glv 186 (195)
.-++|..+ ++++.|+++..+.+.+.|+-
T Consensus 7 kl~lGe~a-~lll~~q~v~P~kL~~~GF~ 34 (48)
T PF08338_consen 7 KLLLGEMA-ELLLASQRVSPKKLLEAGFQ 34 (48)
T ss_dssp -------G-GGGG-EEEE--HHHHHTT--
T ss_pred HHHHHHHH-HHHhCCCeecChHHHHCCCc
Confidence 34456555 89999999999999999874
No 213
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.28 E-value=1.8e+02 Score=21.98 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..... +.|++++.
T Consensus 151 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH 189 (213)
T cd03259 151 LLLLDEPL--SALDAKLREELREELKELQRELG-ITTIYVTH 189 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEec
Confidence 56778886 89999999999999998764323 45655554
No 214
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=28.22 E-value=1.8e+02 Score=22.20 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. ..|++++.
T Consensus 167 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH 205 (228)
T PRK10584 167 VLFADEPT--GNLDRQTGDKIADLLFSLNREHG-TTLILVTH 205 (228)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhcC-CEEEEEec
Confidence 46778886 89999999999999998865333 35555554
No 215
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=28.17 E-value=1.5e+02 Score=22.45 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++.. . +.||+++.
T Consensus 161 llllDEPt--~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH 197 (220)
T cd03245 161 ILLLDEPT--SAMDMNSEERLKERLRQLLG--D-KTLIIITH 197 (220)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHhcC--C-CEEEEEeC
Confidence 46678885 99999999999999998864 3 56766665
No 216
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.14 E-value=1.7e+02 Score=22.51 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.. +.||+++.
T Consensus 157 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsH 195 (235)
T cd03261 157 LLLYDEPT--AGLDPIASGVIDDLIRSLKKELG-LTSIMVTH 195 (235)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHhcC-cEEEEEec
Confidence 46678885 89999999999999988865323 35555554
No 217
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.84 E-value=85 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCCcEEEEEcch
Q 041986 93 TLYSFVYLVATYSKPHVAIMDGI 115 (195)
Q Consensus 93 ~~~~l~~~l~~~~~p~Iaav~G~ 115 (195)
.+.+.+..+.+++||+|+.++-.
T Consensus 118 ~f~~~ve~vl~~~kpliatlHrr 140 (179)
T COG1618 118 KFREAVEEVLKSGKPLIATLHRR 140 (179)
T ss_pred HHHHHHHHHhcCCCcEEEEEecc
Confidence 56667778889999999999855
No 218
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.57 E-value=1.9e+02 Score=21.92 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.+ +.+++++.
T Consensus 152 lllLDEPt--~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH 190 (220)
T cd03293 152 VLLLDEPF--SALDALTREQLQEELLDIWRETG-KTVLLVTH 190 (220)
T ss_pred EEEECCCC--CCCCHHHHHHHHHHHHHHHHHcC-CEEEEEec
Confidence 56778886 89999999999999988754333 34555554
No 219
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.51 E-value=2.1e+02 Score=20.99 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.+ +.+++++.
T Consensus 121 llilDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH 159 (178)
T cd03229 121 VLLLDEPT--SALDPITRREVRALLKSLQAQLG-ITVVLVTH 159 (178)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678885 89999999999999998865322 45555554
No 220
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=27.49 E-value=1.9e+02 Score=22.05 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.+ +.||+++.
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH 204 (228)
T cd03257 166 LLIADEPT--SALDVSVQAQILDLLKKLQEELG-LTLLFITH 204 (228)
T ss_pred EEEecCCC--CCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 46677885 89999999999999988865323 35555554
No 221
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=27.38 E-value=1.9e+02 Score=21.81 Aligned_cols=39 Identities=8% Similarity=0.265 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.. +.||+++.
T Consensus 151 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH 189 (213)
T cd03301 151 VFLMDEPL--SNLDAKLRVQMRAELKRLQQRLG-TTTIYVTH 189 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 46778886 89999999999999998865333 45555554
No 222
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=27.22 E-value=1.9e+02 Score=22.17 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+.++.|. +.+|......+.+.+.++..+... .||+++..
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tvii~sh~ 197 (225)
T PRK10247 158 VLLLDEIT--SALDESNKHNVNEIIHRYVREQNI-AVLWVTHD 197 (225)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCC-EEEEEECC
Confidence 46678885 899999999999999988653333 45555543
No 223
>PRK00170 azoreductase; Reviewed
Probab=27.12 E-value=2.7e+02 Score=20.76 Aligned_cols=87 Identities=8% Similarity=-0.020 Sum_probs=43.9
Q ss_pred EEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc--cHHHHHHHHHHHHHHH
Q 041986 22 VILNRPHVLN-ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG--RVEECKELFRTLYSFV 98 (195)
Q Consensus 22 i~l~~p~~~N-~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~--~~~~~~~~~~~~~~l~ 98 (195)
+.++..++.| +.+..+.+.+.+.++....+.++..+=|.... + ...|........... ..............+.
T Consensus 5 l~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~--~-p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 81 (201)
T PRK00170 5 LVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEP--I-PVLDGEVVGALGKSAETLTPRQQEAVALSDELL 81 (201)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC--C-CCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHH
Confidence 3444444556 99999999888888765222344444333322 2 122222111110000 0011122334566677
Q ss_pred HHHhhCCCcEEEE
Q 041986 99 YLVATYSKPHVAI 111 (195)
Q Consensus 99 ~~l~~~~~p~Iaa 111 (195)
..+..++..+|+.
T Consensus 82 ~~i~~AD~iV~~s 94 (201)
T PRK00170 82 EEFLAADKIVIAA 94 (201)
T ss_pred HHHHHCCEEEEee
Confidence 7888888888775
No 224
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=27.01 E-value=1.9e+02 Score=22.99 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|- +.+|.....++.+.+.++..+.+ +.||+++.
T Consensus 164 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH 202 (269)
T PRK11831 164 LIMFDEPF--VGQDPITMGVLVKLISELNSALG-VTCVVVSH 202 (269)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcC-cEEEEEec
Confidence 56778885 99999999999999999865433 35555554
No 225
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.99 E-value=2.3e+02 Score=21.36 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
.+.++.|. +.+|....+.+.+.+.++..+.....++++.
T Consensus 139 llllDEPt--~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 139 VLCWDNST--RGLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 46678885 8899999999999999886543334444444
No 226
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=26.98 E-value=2.1e+02 Score=21.91 Aligned_cols=39 Identities=10% Similarity=0.308 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++.++.. +.+|+++.
T Consensus 152 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH 190 (230)
T TIGR03410 152 LLLLDEPT--EGIQPSIIKDIGRVIRRLRAEGG-MAILLVEQ 190 (230)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHcCC-cEEEEEeC
Confidence 46678885 99999999999999998865323 45555554
No 227
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.81 E-value=2.5e+02 Score=21.02 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=35.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccch
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVV 73 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~ 73 (195)
.+.++.|. +.+|......+.+.+.++..+ -..+|+++....|-...|..
T Consensus 148 ~lilDEP~--~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 148 LWLLDEPL--VALDELSLLTIITKIQEHRAK--GGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred EEEEeCCC--cccCHHHHHHHHHHHHHHHHc--CCEEEEEeCCchhccccchh
Confidence 46678885 899999999999999987543 24566666655554445543
No 228
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=26.81 E-value=2.1e+02 Score=21.62 Aligned_cols=38 Identities=8% Similarity=0.219 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++.. .. +.||+.++
T Consensus 153 llllDEPt--~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sH 190 (213)
T cd03235 153 LLLLDEPF--AGVDPKTQEDIYELLRELRR-EG-MTILVVTH 190 (213)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeC
Confidence 45678885 89999999999999998864 23 35555554
No 229
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=26.67 E-value=2e+02 Score=21.78 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+.. + +.+|+++.
T Consensus 154 llllDEP~--~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH 190 (220)
T cd03263 154 VLLLDEPT--SGLDPASRRAIWDLILEVRK--G-RSIILTTH 190 (220)
T ss_pred EEEECCCC--CCCCHHHHHHHHHHHHHHhc--C-CEEEEEcC
Confidence 46788886 99999999999999998864 3 56766665
No 230
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=26.56 E-value=1.1e+02 Score=27.54 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=32.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceecc
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G 69 (195)
.+.|+-|. |=+|.+.+.+|.++|.... .+||+-++.+.|...
T Consensus 460 vLiLDEPT--NhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 460 LLLLDEPT--NHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLDR 501 (530)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHh
Confidence 35778997 9999999999999998864 366666766555443
No 231
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=26.33 E-value=1.8e+02 Score=22.99 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|+.....+.+.+.++..... +.||+.+.
T Consensus 170 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g-~tviivsH 208 (267)
T PRK15112 170 VIIADEAL--ASLDMSMRSQLINLMLELQEKQG-ISYIYVTQ 208 (267)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-cEEEEEeC
Confidence 46778885 89999999999999999865323 34555554
No 232
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=26.23 E-value=28 Score=27.03 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=32.8
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc
Q 041986 11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWEN 50 (195)
Q Consensus 11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~ 50 (195)
+.-+.+|+|..+..|... .|.+-.+...++++.|+.++.
T Consensus 69 i~kd~~G~I~~iq~nT~~-~N~i~s~~~~~vq~~L~~l~~ 107 (204)
T TIGR02832 69 IETDENGKITLIQANTLL-LNKLASNITLRVQEKLNELGE 107 (204)
T ss_pred EEECCCCcEEEEEcCHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 444456789999998774 899999999999999999975
No 233
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.12 E-value=1.9e+02 Score=23.21 Aligned_cols=39 Identities=10% Similarity=0.317 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
.+.++.|. +.+|.....++.+.+..+..+.+..+|++|.
T Consensus 166 illlDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH 204 (286)
T PRK13646 166 IIVLDEPT--AGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204 (286)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 46778886 8999999999999999886543444444443
No 234
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=26.07 E-value=1.5e+02 Score=20.17 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 33 LNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
++.+++.-+.+.++++.++++..+-|++|.
T Consensus 2 YS~~Fv~Nm~~Iv~~l~~~~~~~I~iv~~~ 31 (103)
T PF06935_consen 2 YSPEFVENMKKIVERLRNDPGEPIEIVDGP 31 (103)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECc
Confidence 688999999999999987788888888876
No 235
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=26.03 E-value=1.9e+02 Score=22.76 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. ..||+++.
T Consensus 173 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~g-~tvii~tH 211 (262)
T PRK09984 173 VILADEPI--ASLDPESARIVMDTLRDINQNDG-ITVVVTLH 211 (262)
T ss_pred EEEecCcc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46778886 89999999999999999865333 35555554
No 236
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=25.88 E-value=2.1e+02 Score=21.80 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+ +.||+++.
T Consensus 162 llllDEPt--~~LD~~~~~~l~~~l~~~~~~---~tii~~sH 198 (227)
T cd03260 162 VLLLDEPT--SALDPISTAKIEELIAELKKE---YTIVIVTH 198 (227)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHhhC---cEEEEEec
Confidence 46678885 899999999999999988653 56666665
No 237
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=25.81 E-value=2e+02 Score=22.65 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+..+..... +.||+++.
T Consensus 149 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~~g-~tviivsH 187 (255)
T PRK11248 149 LLLLDEPF--GALDAFTREQMQTLLLKLWQETG-KQVLLITH 187 (255)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46778886 89999999999999998743223 34555444
No 238
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=25.75 E-value=2.1e+02 Score=19.18 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH-HHhhCCCcEEEEEcc
Q 041986 39 ALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY-LVATYSKPHVAIMDG 114 (195)
Q Consensus 39 ~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~p~Iaav~G 114 (195)
+++.++|+++-.++++..|++|-. + +..+.+..+ .+....+|+|-.+.|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite~------------~---------------~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHDD------------D---------------LEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEehh------------H---------------hHhhHHHHHHHHhcCCCCEEEEECC
Confidence 567888888866788888888762 1 111122222 355789999999976
No 239
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=25.56 E-value=2.5e+02 Score=20.64 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCC--CceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc
Q 041986 36 SMVALLTKQYESWENNSGVDFVVIKGNG--RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD 113 (195)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g--~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~ 113 (195)
.+...|.+.|. +...++.+|-|.. ..++.+..... ++ -.+..+.+..+.+.+......+|++.-
T Consensus 17 TlA~~L~~~L~----~~g~~~~~LDgD~lR~~l~~dl~fs~------~d----R~e~~rr~~~~A~ll~~~G~ivIva~i 82 (156)
T PF01583_consen 17 TLARALERRLF----ARGIKVYLLDGDNLRHGLNADLGFSK------ED----REENIRRIAEVAKLLADQGIIVIVAFI 82 (156)
T ss_dssp HHHHHHHHHHH----HTTS-EEEEEHHHHCTTTTTT--SSH------HH----HHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred HHHHHHHHHHH----HcCCcEEEecCcchhhccCCCCCCCH------HH----HHHHHHHHHHHHHHHHhCCCeEEEeec
Confidence 33444444444 3568999999986 56766554332 11 124445666677778888888888765
Q ss_pred chh
Q 041986 114 GIT 116 (195)
Q Consensus 114 G~~ 116 (195)
.+-
T Consensus 83 sp~ 85 (156)
T PF01583_consen 83 SPY 85 (156)
T ss_dssp --S
T ss_pred cCc
Confidence 543
No 240
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=25.55 E-value=2.2e+02 Score=21.97 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+.++.|. +.+|.....++.+.+.++..... +.+|+++..
T Consensus 153 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~ 192 (236)
T TIGR03864 153 LLLLDEPT--VGLDPASRAAIVAHVRALCRDQG-LSVLWATHL 192 (236)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecC
Confidence 46778886 99999999999999998864323 345555543
No 241
>PRK03195 hypothetical protein; Provisional
Probab=25.40 E-value=1.4e+02 Score=22.74 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=34.6
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHH-HHHHHHHHHHhcCCCceEEEEEeCC-Cceecc
Q 041986 14 EERANSRTVILNRPHVLNALNTSMV-ALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69 (195)
Q Consensus 14 ~~~~~v~~i~l~~p~~~N~~~~~~~-~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G 69 (195)
..++++++|..+.+. -+....++ .+|.+.|+..-.+.-|+-|+|.|-. .+|.-|
T Consensus 117 ~i~~gvL~V~~~Ssa--WAteL~~~k~~Ii~rLN~~lG~~vV~~I~i~GP~~psw~~g 172 (186)
T PRK03195 117 ALNDGVLSVSAESTA--WATQLRMMQAQLLAKIAAAVGDGVVTSLKITGPAAPSWRKG 172 (186)
T ss_pred EEECCEEEEEeCCHH--HHHHHHhhHHHHHHHHHHHhCccceeEEEEeCCCCCCCCcC
Confidence 346899999987764 12222222 2355555555556789999999976 677665
No 242
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.40 E-value=2e+02 Score=22.10 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.||+++.
T Consensus 165 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH 203 (241)
T cd03256 165 LILADEPV--ASLDPASSRQVMDLLKRINREEG-ITVIVSLH 203 (241)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678885 89999999999999998864333 34555554
No 243
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=25.39 E-value=2.5e+02 Score=20.98 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|....+.+.+.++++... -+.+|+++.
T Consensus 132 illlDEP~--~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh 169 (194)
T cd03213 132 LLFLDEPT--SGLDSSSALQVMSLLRRLADT--GRTIICSIH 169 (194)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHhC--CCEEEEEec
Confidence 46778886 999999999999999988643 345666554
No 244
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=25.34 E-value=3.3e+02 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 31 NALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.-++++.+.+|.+.+.+.-.+..-.+||.+|+
T Consensus 118 ~~mtp~~w~~La~~I~~~~~~~~dGvVVtHGT 149 (404)
T TIGR02153 118 ENMKPEYWIKIAEAVAKALKEGADGVVVAHGT 149 (404)
T ss_pred hhCCHHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 34677777777777766543322234444444
No 245
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.31 E-value=2.1e+02 Score=21.95 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+..+..+.. +.|++++.
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH 199 (233)
T cd03258 161 VLLCDEAT--SALDPETTQSILALLRDINRELG-LTIVLITH 199 (233)
T ss_pred EEEecCCC--CcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 46678885 89999999999999988765323 35555554
No 246
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.29 E-value=2e+02 Score=23.13 Aligned_cols=39 Identities=13% Similarity=0.312 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
.+.++.|- +.+|+....++.+.|..+..+.+..++++|.
T Consensus 166 llllDEPt--~~LD~~~~~~l~~~L~~l~~~~g~tviiitH 204 (290)
T PRK13634 166 VLVLDEPT--AGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH 204 (290)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46778885 8999999999999999886543444444443
No 247
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=25.28 E-value=86 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=19.9
Q ss_pred CceEEEEEeCCCceeccccchhHHHhh
Q 041986 53 GVDFVVIKGNGRSFCAGGDVVGAYRML 79 (195)
Q Consensus 53 ~~~~vvl~~~g~~F~~G~dl~~~~~~~ 79 (195)
++++.=+.|+....|+|+||+--.+..
T Consensus 79 Si~v~D~Agn~hVLCaGIDLNPAi~aQ 105 (178)
T PF12268_consen 79 SIKVKDLAGNNHVLCAGIDLNPAIDAQ 105 (178)
T ss_pred ccccccCCCCceeEEecccCCHhHhhc
Confidence 466666777778999999998755443
No 248
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=25.20 E-value=2.5e+02 Score=20.77 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+ . +.|++++.
T Consensus 148 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~-~tili~sH 185 (190)
T TIGR01166 148 VLLLDEPT--AGLDPAGREQMLAILRRLRAE-G-MTVVISTH 185 (190)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-C-CEEEEEee
Confidence 46778886 899999999999999988653 3 35555543
No 249
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.19 E-value=2e+02 Score=22.27 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.||+++.
T Consensus 156 llllDEPt--~~LD~~~~~~l~~~L~~~~~~~g-~tvii~sH 194 (242)
T cd03295 156 LLLMDEPF--GALDPITRDQLQEEFKRLQQELG-KTIVFVTH 194 (242)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEec
Confidence 46678885 99999999999999998865323 45555554
No 250
>PLN03037 lipase class 3 family protein; Provisional
Probab=25.12 E-value=68 Score=28.63 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEE
Q 041986 92 RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRL 131 (195)
Q Consensus 92 ~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~i 131 (195)
..+.++.......+...--.|.||.+||.+.++.+.|+..
T Consensus 302 ~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~DIa~ 341 (525)
T PLN03037 302 EEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYEAAR 341 (525)
T ss_pred HHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHHHHH
Confidence 3344444333333344444588999999999999988753
No 251
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.07 E-value=2.3e+02 Score=20.69 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+ . ..+++.+.
T Consensus 116 illlDEPt--~~LD~~~~~~l~~~l~~~~~~-g-~tiii~th 153 (173)
T cd03230 116 LLILDEPT--SGLDPESRREFWELLRELKKE-G-KTILLSSH 153 (173)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEECC
Confidence 46677885 889999999999999988654 3 34555543
No 252
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=24.80 E-value=2.3e+02 Score=22.03 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|- +.+|......+.+.|.++.+..+. .||+++.
T Consensus 174 llllDEPt--~~LD~~~~~~l~~~L~~~~~~~~~-tii~~sH 212 (255)
T PRK11300 174 ILMLDEPA--AGLNPKETKELDELIAELRNEHNV-TVLLIEH 212 (255)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHhhcCC-EEEEEeC
Confidence 46677885 999999999999999988653333 5555554
No 253
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=24.79 E-value=2.2e+02 Score=22.21 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|- +.+|.....++.+.+.++..+.+. .+|+++.
T Consensus 169 vlllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~-tii~vsH 207 (253)
T TIGR02323 169 LVFMDEPT--GGLDVSVQARLLDLLRGLVRDLGL-AVIIVTH 207 (253)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeC
Confidence 46678885 899999999999999887543334 4444444
No 254
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=24.75 E-value=2e+02 Score=23.45 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=12.0
Q ss_pred CCCcEEEEEcchhc
Q 041986 104 YSKPHVAIMDGITM 117 (195)
Q Consensus 104 ~~~p~Iaav~G~~~ 117 (195)
..||+|+..-|..-
T Consensus 224 ~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 224 MSKPVVGFIAGATA 237 (286)
T ss_pred CCCCEEEEEecCCC
Confidence 68999999988864
No 255
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=24.74 E-value=2.6e+02 Score=20.40 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+... . +.+++.+.
T Consensus 117 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~sh 154 (173)
T cd03246 117 ILVLDEPN--SHLDVEGERALNQAIAALKAA-G-ATRIVIAH 154 (173)
T ss_pred EEEEECCc--cccCHHHHHHHHHHHHHHHhC-C-CEEEEEeC
Confidence 45677885 899999999999999888642 3 35555554
No 256
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=24.69 E-value=2.2e+02 Score=22.56 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+..+..+.. +.||+.+.
T Consensus 154 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~~~-~tviivsH 192 (257)
T PRK11247 154 LLLLDEPL--GALDALTRIEMQDLIESLWQQHG-FTVLLVTH 192 (257)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 46678885 89999999999999988754323 34555543
No 257
>PRK10908 cell division protein FtsE; Provisional
Probab=24.64 E-value=2.5e+02 Score=21.39 Aligned_cols=38 Identities=13% Similarity=0.362 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+..+ . ..+++++.
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sH 195 (222)
T PRK10908 158 VLLADEPT--GNLDDALSEGILRLFEEFNRV-G-VTVLMATH 195 (222)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 46678885 999999999999999988643 3 35555554
No 258
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=24.58 E-value=2.1e+02 Score=22.06 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.+|+++.
T Consensus 166 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~tH 204 (243)
T TIGR02315 166 LILADEPI--ASLDPKTSKQVMDYLKRINKEDG-ITVIINLH 204 (243)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 45678885 89999999999999988854323 34555554
No 259
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=24.41 E-value=2.1e+02 Score=23.59 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
.+.++.|- +.+|.....++.+.|.++..+.+.-.|++|-
T Consensus 179 llilDEPt--s~LD~~~~~~i~~lL~~l~~~~g~tii~itH 217 (330)
T PRK15093 179 LLIADEPT--NAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217 (330)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 46778885 8999999999999999987644555555544
No 260
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.40 E-value=2.2e+02 Score=22.70 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+... .+|+.+.
T Consensus 161 llllDEPt--~~LD~~~~~~l~~~l~~l~~~~g~-tiil~sH 199 (277)
T PRK13642 161 IIILDEST--SMLDPTGRQEIMRVIHEIKEKYQL-TVLSITH 199 (277)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeC
Confidence 46678885 899999999999999988653333 4444443
No 261
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=24.33 E-value=2.5e+02 Score=21.17 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++... . +.||+.+.
T Consensus 159 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~vsH 196 (216)
T TIGR00960 159 LLLADEPT--GNLDPELSRDIMRLFEEFNRR-G-TTVLVATH 196 (216)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 46778886 999999999999999988643 3 34555554
No 262
>PRK14556 pyrH uridylate kinase; Provisional
Probab=24.32 E-value=1.7e+02 Score=23.44 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceec
Q 041986 29 VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68 (195)
Q Consensus 29 ~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~ 68 (195)
+.+.++.+.+.++.+.+..+.+ .++++.|+.|.|+.|..
T Consensus 31 ~~~~~d~~~~~~~a~~i~~~~~-~g~~i~iVvGGGni~Rg 69 (249)
T PRK14556 31 QGFGINVESAQPIINQIKTLTN-FGVELALVVGGGNILRG 69 (249)
T ss_pred CCCCcCHHHHHHHHHHHHHHHh-CCcEEEEEECCCHHHhC
Confidence 3567999999999999999875 36899999998877764
No 263
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=24.32 E-value=2.4e+02 Score=21.80 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=30.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+.++.|. +.+|+....++.+.+.++.. . +.+|+++..
T Consensus 164 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~ 201 (242)
T TIGR03411 164 LLLLDEPV--AGMTDEETEKTAELLKSLAG--K-HSVVVVEHD 201 (242)
T ss_pred EEEecCCc--cCCCHHHHHHHHHHHHHHhc--C-CEEEEEECC
Confidence 56778886 99999999999999998864 2 577777764
No 264
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=24.23 E-value=2.2e+02 Score=22.45 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+... .||+++.
T Consensus 168 lllLDEPt--~~LD~~~~~~~~~~l~~l~~~~~~-tiii~sH 206 (265)
T PRK10575 168 CLLLDEPT--SALDIAHQVDVLALVHRLSQERGL-TVIAVLH 206 (265)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeC
Confidence 46778886 899999999999999988654333 4555554
No 265
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.21 E-value=2.8e+02 Score=20.08 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=35.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC--Cceecccc
Q 041986 19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG--RSFCAGGD 71 (195)
Q Consensus 19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g--~~F~~G~d 71 (195)
+-.++|+.+ -+.+-+.+++..+..+-+|..+.-|+|.--- +-|..|.-
T Consensus 32 ~~k~~l~~~-----~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga~ 81 (138)
T PF11215_consen 32 VRKFSLSDD-----NSTEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGGAV 81 (138)
T ss_pred eeEEEcCCC-----ccHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCCch
Confidence 445555444 4889999999999999888889999988754 55666543
No 266
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=24.17 E-value=2.3e+02 Score=22.30 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.||+.++
T Consensus 136 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH 174 (246)
T cd03237 136 IYLLDEPS--AYLDVEQRLMASKVIRRFAENNE-KTAFVVEH 174 (246)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678886 89999999999999998865333 34555553
No 267
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=24.13 E-value=2.6e+02 Score=20.87 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+ + ..+++++.
T Consensus 155 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~sh 192 (206)
T TIGR03608 155 LILADEPT--GSLDPKNRDEVLDLLLELNDE-G-KTIIIVTH 192 (206)
T ss_pred EEEEeCCc--CCCCHHHHHHHHHHHHHHHhc-C-CEEEEEeC
Confidence 46778886 899999999999999988643 3 45555554
No 268
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=24.13 E-value=2.1e+02 Score=23.50 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=12.2
Q ss_pred CCCcEEEEEcchhc
Q 041986 104 YSKPHVAIMDGITM 117 (195)
Q Consensus 104 ~~~p~Iaav~G~~~ 117 (195)
..||+|+.--|..-
T Consensus 226 ~~KPVV~lk~Grs~ 239 (291)
T PRK05678 226 VTKPVVGYIAGVTA 239 (291)
T ss_pred CCCCEEEEEecCCC
Confidence 48999999999865
No 269
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=24.10 E-value=2.4e+02 Score=20.96 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 041986 20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~ 60 (195)
..+.++-|+ +.+.+....+|.+.|..... .++.+++-|
T Consensus 259 ~illiDEpE--~~LHp~~q~~l~~~l~~~~~-~~~QviitT 296 (303)
T PF13304_consen 259 SILLIDEPE--NHLHPSWQRKLIELLKELSK-KNIQVIITT 296 (303)
T ss_dssp SEEEEESSS--TTSSHHHHHHHHHHHHHTGG-GSSEEEEEE
T ss_pred eEEEecCCc--CCCCHHHHHHHHHHHHhhCc-cCCEEEEeC
Confidence 357789998 89999999999999987765 456665544
No 270
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=24.07 E-value=2.2e+02 Score=22.26 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+..+.. ..||+.+.
T Consensus 172 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~isH 210 (258)
T PRK11701 172 LVFMDEPT--GGLDVSVQARLLDLLRGLVRELG-LAVVIVTH 210 (258)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeC
Confidence 46778886 89999999999999988765333 35555554
No 271
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=24.05 E-value=1.2e+02 Score=22.60 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-----CCceEEEEEeCCCceeccccchhHH
Q 041986 31 NALNTSMVALLTKQYESWENN-----SGVDFVVIKGNGRSFCAGGDVVGAY 76 (195)
Q Consensus 31 N~~~~~~~~~l~~~l~~~~~~-----~~~~~vvl~~~g~~F~~G~dl~~~~ 76 (195)
+.+ ++.++++.++++.+.++ -+..-|+|.| .|+|+.+....
T Consensus 43 ~~~-p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G----~SAGg~la~~~ 88 (211)
T PF07859_consen 43 APF-PAALEDVKAAYRWLLKNADKLGIDPERIVLIG----DSAGGHLALSL 88 (211)
T ss_dssp SST-THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEE----ETHHHHHHHHH
T ss_pred ccc-cccccccccceeeeccccccccccccceEEee----cccccchhhhh
Confidence 444 58889999999998776 5667888999 69999887644
No 272
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=24.05 E-value=1.8e+02 Score=24.78 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=28.3
Q ss_pred CCCcEEEEEcchhcchhhHHhhhcCEEE-----EeCCeEEecCccc-ccccCC
Q 041986 104 YSKPHVAIMDGITMGGGAGIAVHASYRL-----ATEKTVFAMPEVL-IGFHPD 150 (195)
Q Consensus 104 ~~~p~Iaav~G~~~g~G~~l~l~~D~~i-----a~~~a~~~~pe~~-~G~~p~ 150 (195)
.+.|+.+.+.+...|. .-++-|.. +.++..+..|..+ +|+.|.
T Consensus 240 ~~lpv~~l~D~DP~G~----~I~~tyk~GS~~~a~~s~~l~~P~~kwlGl~~s 288 (367)
T PRK04342 240 LGLPVYVFTDGDPWGY----YIYSVVKYGSIKLAHLSERLATPDAKFIGVTPS 288 (367)
T ss_pred cCCCEEEEECCCccHH----HHHHHHHhCchhhhhhhhhccCCCCEEecCcHH
Confidence 4799999999998773 33334444 3345557777776 666653
No 273
>smart00245 TSPc tail specific protease. tail specific protease
Probab=23.71 E-value=2.2e+02 Score=21.34 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHh---hhcccHHHHHHHHHH
Q 041986 17 ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRM---LKEGRVEECKELFRT 93 (195)
Q Consensus 17 ~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~---~~~~~~~~~~~~~~~ 93 (195)
+.|+.|.+ ++++....+++.++++.+... +++.+||--- .+.|+++...... ..+.... .......
T Consensus 28 ~~igYi~i------~~f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR---~N~GG~~~~~~~~~~~f~~~~~~-~~~~~~~ 96 (192)
T smart00245 28 GNIGYIRI------PEFSEHTSNLVEKAWKKLEKT-NVEGLILDLR---NNPGGLLSAAIDVSSLFLDKGVI-VYTIYRR 96 (192)
T ss_pred CcEEEEEE------eEEChhhHHHHHHHHHHHHhC-CCcEEEEEec---CCCCCCHHHHHHHHHHhcCCCcE-EEEEecC
Confidence 47888887 446666788899999999864 5888887654 3455554432211 1010000 0000000
Q ss_pred -HHH--H-HHHHhhCCCcEEEEEcchhcchhhHHhhh
Q 041986 94 -LYS--F-VYLVATYSKPHVAIMDGITMGGGAGIAVH 126 (195)
Q Consensus 94 -~~~--l-~~~l~~~~~p~Iaav~G~~~g~G~~l~l~ 126 (195)
... + ...-....+|++..+++.+..++=.++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~pv~vL~~~~TaSaaE~~a~~ 133 (192)
T smart00245 97 TGELETYPANLGRKYSKPLVVLVNEGTASASEIFAGA 133 (192)
T ss_pred CCceEEEecCCCcccCCCEEEEECCCCeeHHHHHHHH
Confidence 000 0 00001236999999999998877555443
No 274
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=1.6e+02 Score=20.99 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-----CCceecc
Q 041986 32 ALNTSMVALLTKQYESWENNSGVDFVVIKGN-----GRSFCAG 69 (195)
Q Consensus 32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~-----g~~F~~G 69 (195)
.+.....+++++.++..++.+. -.|.++|. |.+||.-
T Consensus 6 ~~~~~g~e~~~~~~~~~~n~~~-ifvlF~gskd~~tGqSWCPd 47 (128)
T KOG3425|consen 6 AVLLPGYESFEETLKNVENGKT-IFVLFLGSKDDTTGQSWCPD 47 (128)
T ss_pred ccccchHHHHHHHHHHHhCCce-EEEEEecccCCCCCCcCCch
Confidence 4556778999999999988776 45555554 3567753
No 275
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.66 E-value=2.3e+02 Score=21.83 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.||+++.
T Consensus 157 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH 195 (239)
T cd03296 157 VLLLDEPF--GALDAKVRKELRRWLRRLHDELH-VTTVFVTH 195 (239)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 46778886 89999999999999988865323 35555554
No 276
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=23.64 E-value=2.9e+02 Score=20.32 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++... + +.+++++.
T Consensus 125 llllDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sh 162 (182)
T cd03215 125 VLILDEPT--RGVDVGAKAEIYRLIRELADA-G-KAVLLISS 162 (182)
T ss_pred EEEECCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 46678885 999999999999999988643 3 45666654
No 277
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=23.64 E-value=2.3e+02 Score=22.04 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+... .+|+.+.
T Consensus 167 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~-tiiivsH 205 (252)
T TIGR03005 167 VMLFDEVT--SALDPELVGEVLNVIRRLASEHDL-TMLLVTH 205 (252)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCc-EEEEEeC
Confidence 56778886 899999999999999988653333 4444443
No 278
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=23.64 E-value=2.3e+02 Score=22.32 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.|..+..+.. ..+|+++.
T Consensus 164 llllDEPt--~gLD~~~~~~l~~~L~~l~~~~~-~tiii~tH 202 (265)
T PRK10253 164 IMLLDEPT--TWLDISHQIDLLELLSELNREKG-YTLAAVLH 202 (265)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678885 89999999999999998865333 34555554
No 279
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=23.59 E-value=4e+02 Score=21.56 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=26.4
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 18 NSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 18 ~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
+...+-+-..+ .|--| +.++|+.+-.|++.+.+|+-|.
T Consensus 203 QslcvGiGGDp-FnGT~------FID~L~vFl~D~~t~GIiliGE 240 (329)
T KOG1255|consen 203 QSLCVGIGGDP-FNGTN------FIDCLEVFLEDPETEGIILIGE 240 (329)
T ss_pred ceeEEeecCCC-CCCcc------HHHHHHHHhcCcccceEEEEec
Confidence 34455554333 44444 6788888888999999999985
No 280
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=23.58 E-value=1.2e+02 Score=22.85 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=42.8
Q ss_pred cceEEEEEeCCEEEEEEcCCCCCCCCC------HHHHH---HHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHH
Q 041986 8 QIHVLVEERANSRTVILNRPHVLNALN------TSMVA---LLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAY 76 (195)
Q Consensus 8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~------~~~~~---~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~ 76 (195)
.+.+.-+-+..|+.+||........+. -.... .+......+-.|+++|.+|++|.- +..-+|--+..+.
T Consensus 13 GdY~vGdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~aLh 91 (176)
T PF04208_consen 13 GDYVVGDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLALH 91 (176)
T ss_pred cceEECCCCCCEEEEECccccchhhhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHHHHH
Confidence 344555567789999997654211111 11111 256677777789999999999987 5555565555443
No 281
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=23.54 E-value=3e+02 Score=20.53 Aligned_cols=39 Identities=5% Similarity=0.101 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.+++.++
T Consensus 92 lllLDEPt--s~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH 130 (177)
T cd03222 92 FYLFDEPS--AYLDIEQRLNAARAIRRLSEEGK-KTALVVEH 130 (177)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHcCC-CEEEEEEC
Confidence 45667775 88999999999999988764322 34555554
No 282
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=23.41 E-value=1.5e+02 Score=22.28 Aligned_cols=97 Identities=9% Similarity=0.021 Sum_probs=53.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHH
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL 100 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (195)
.+....+...| -+.+-+++....|+.+.. ....++||||+.----.--|... .+.+.+++.-
T Consensus 32 ~~~~~~h~~~~-~~~~~l~~~Y~~~~~i~~-~~yDGlIITGApve~~~fe~v~Y----------------w~El~~i~dw 93 (175)
T cd03131 32 FIRPSSHSSKN-TPPEHVNRFYETFDDIRD-AKFDGLIVTGAPVEHLPFEQVDY----------------WEELTEILDW 93 (175)
T ss_pred EEecCCCCCCC-CCHHHHHHhccCHHHccc-cCCCEEEEeCCCcccCCccccch----------------HHHHHHHHHH
Confidence 44444444344 378899999999999975 56899999997521111222221 1222233333
Q ss_pred HhhCCCcEEEEEcchhcchhhHHhhhcCEE-EEeCCeEEe
Q 041986 101 VATYSKPHVAIMDGITMGGGAGIAVHASYR-LATEKTVFA 139 (195)
Q Consensus 101 l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~-ia~~~a~~~ 139 (195)
..+.-+|+ =|.|+|+-+.+-....+. ..-++-.|+
T Consensus 94 a~~~v~st----l~iCWgaqaal~~~yGi~k~~~~~K~~G 129 (175)
T cd03131 94 AKTHVTST----LFSCWAAMAALYYFYGIKKHQLPEKIFG 129 (175)
T ss_pred HHHhCcch----HHHHHHHHHHHHHHcCcccccCCCceEE
Confidence 33333343 378888766666666653 333444444
No 283
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.22 E-value=2.2e+02 Score=18.54 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=32.2
Q ss_pred EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 13 VEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 13 ~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+..+++..+.++.| ++.....++.+.+.....++..+.+|+--.+
T Consensus 3 ~~~~~~v~ii~~~G~-----l~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (100)
T cd06844 3 LEKVDDYWVVRLEGE-----LDHHSVEQFKEELLHNITNVAGKTIVIDISA 48 (100)
T ss_pred eEEECCEEEEEEEEE-----ecHhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 456778899998765 5667777788777544333567888887765
No 284
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=23.12 E-value=2.8e+02 Score=20.79 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.|.++..+ -+.+|+++.
T Consensus 125 illlDEPt--~~LD~~~~~~l~~~L~~~~~~--~~tiii~sh 162 (200)
T cd03217 125 LAILDEPD--SGLDIDALRLVAEVINKLREE--GKSVLIITH 162 (200)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHC--CCEEEEEec
Confidence 46678885 899999999999999988643 356666664
No 285
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.03 E-value=2.6e+02 Score=21.55 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|....+.+.+.+..+..+... .+|+.+.
T Consensus 150 llllDEPt--~gLD~~~~~~l~~~l~~~~~~~~~-tili~tH 188 (235)
T cd03299 150 ILLLDEPF--SALDVRTKEKLREELKKIRKEFGV-TVLHVTH 188 (235)
T ss_pred EEEECCCc--ccCCHHHHHHHHHHHHHHHHhcCC-EEEEEec
Confidence 56778886 899999999999999988654343 4555554
No 286
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=23.03 E-value=2.5e+02 Score=21.54 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+.++.|. +.+|......+.+.+..+..+.+ +.+|+++..
T Consensus 150 lllLDEP~--~gLD~~~~~~~~~~l~~~~~~~~-~tiii~sH~ 189 (232)
T PRK10771 150 ILLLDEPF--SALDPALRQEMLTLVSQVCQERQ-LTLLMVSHS 189 (232)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECC
Confidence 46678885 89999999999999998764323 355555543
No 287
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.99 E-value=2.5e+02 Score=21.73 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.||+.+.
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH 190 (241)
T PRK14250 152 VLLLDEPT--SALDPTSTEIIEELIVKLKNKMN-LTVIWITH 190 (241)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhCC-CEEEEEec
Confidence 46678885 89999999999999988865323 35555554
No 288
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=22.94 E-value=2.9e+02 Score=20.66 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.+...+ .. .+|+++.
T Consensus 146 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-g~-tiii~sH 183 (201)
T cd03231 146 LWILDEPT--TALDKAGVARFAEAMAGHCAR-GG-MVVLTTH 183 (201)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhC-CC-EEEEEec
Confidence 56778886 899999999999999887543 33 5555554
No 289
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.89 E-value=2.5e+02 Score=21.10 Aligned_cols=37 Identities=11% Similarity=0.251 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.++++.. . +.+++.+.
T Consensus 151 llllDEPt--~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH 187 (211)
T cd03264 151 ILIVDEPT--AGLDPEERIRFRNLLSELGE--D-RIVILSTH 187 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHhC--C-CEEEEEcC
Confidence 45678886 89999999999999999864 3 56666654
No 290
>PRK05665 amidotransferase; Provisional
Probab=22.64 E-value=2.1e+02 Score=22.63 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhCCCcEEEEEcch
Q 041986 93 TLYSFVYLVATYSKPHVAIMDGI 115 (195)
Q Consensus 93 ~~~~l~~~l~~~~~p~Iaav~G~ 115 (195)
...++++.+....+|+++.+-|+
T Consensus 79 ~l~~~i~~~~~~~~PilGIC~Gh 101 (240)
T PRK05665 79 TLKTYLLKLYERGDKLLGVCFGH 101 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEeHHH
Confidence 44455556666789999888776
No 291
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.52 E-value=2.6e+02 Score=22.33 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
.+.++.|- +.+|.....++.+.+.++....+..+|++|.
T Consensus 161 lllLDEPt--~gLD~~~~~~l~~~l~~l~~~~~~tilivsH 199 (279)
T PRK13635 161 IIILDEAT--SMLDPRGRREVLETVRQLKEQKGITVLSITH 199 (279)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 46778885 8999999999999999887543344444443
No 292
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=22.42 E-value=2.4e+02 Score=22.50 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....+|.+.+.++..+... .|++.+.
T Consensus 165 llllDEPt--~gLD~~~~~~l~~~l~~l~~~~g~-tillvtH 203 (280)
T PRK13633 165 CIIFDEPT--AMLDPSGRREVVNTIKELNKKYGI-TIILITH 203 (280)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCC-EEEEEec
Confidence 46678886 899999999999999988643333 4444443
No 293
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=22.33 E-value=2e+02 Score=20.10 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=19.1
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCcee
Q 041986 22 VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFV--VIKGNGRSFC 67 (195)
Q Consensus 22 i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~v--vl~~~g~~F~ 67 (195)
|...+.+.+|....+.=.++.+.|..+..--+++++ +|-|.++.||
T Consensus 69 Il~HNHPsG~~~PS~~D~~~T~~L~~~~~~l~I~llDHiIv~~~~~~S 116 (123)
T PF04002_consen 69 ILAHNHPSGDPEPSDADIALTRRLKKAARLLGIELLDHIIVGDGGYFS 116 (123)
T ss_dssp EEEEE-TTS--S--HHHHHHHHHHHHHHHHHT-EEEEEEEEESSEEEE
T ss_pred EEEEEcCCCCCCCCHhHHHHHHHHHHHHHHcCCeeeeEEEEeCCcEEE
Confidence 344444445555554444555555555443345552 3445555554
No 294
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.32 E-value=2.5e+02 Score=22.57 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.||+++.
T Consensus 171 lLlLDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiiiisH 209 (289)
T PRK13645 171 TLVLDEPT--GGLDPKGEEDFINLFERLNKEYK-KRIIMVTH 209 (289)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEec
Confidence 46678885 89999999999999988765333 35555553
No 295
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=22.30 E-value=3e+02 Score=20.55 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|+....++.+.+..+... + +.+++++.
T Consensus 147 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~sH 184 (205)
T cd03226 147 LLIFDEPT--SGLDYKNMERVGELIRELAAQ-G-KAVIVITH 184 (205)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 46778885 999999999999999988643 2 45666554
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=22.28 E-value=2.9e+02 Score=20.99 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++... . ..|++++.
T Consensus 170 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-g-~tii~vsH 207 (224)
T TIGR02324 170 ILLLDEPT--ASLDAANRQVVVELIAEAKAR-G-AALIGIFH 207 (224)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHhc-C-CEEEEEeC
Confidence 56678885 999999999999999998643 3 35555554
No 297
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=22.15 E-value=2.7e+02 Score=21.49 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.+|+++.
T Consensus 151 llllDEP~--~~LD~~~~~~~~~~l~~~~~~~~-~tvli~sH 189 (237)
T TIGR00968 151 VLLLDEPF--GALDAKVRKELRSWLRKLHDEVH-VTTVFVTH 189 (237)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678886 89999999999999998865323 45655554
No 298
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=22.14 E-value=2.5e+02 Score=22.46 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
-.+.++.|. +.+|......+.+.+.++..+.. +.|++++.
T Consensus 174 ~lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH 213 (272)
T PRK13547 174 RYLLLDEPT--AALDLAHQHRLLDTVRRLARDWN-LGVLAIVH 213 (272)
T ss_pred CEEEEcCcc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEEC
Confidence 356778886 99999999999999999865433 34555554
No 299
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=22.13 E-value=2.7e+02 Score=21.91 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+.++.|. +.+|.....++.+.|.++..+.. ..||+++..
T Consensus 141 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~~g-~tiiivsH~ 180 (251)
T PRK09544 141 LLVLDEPT--QGVDVNGQVALYDLIDQLRRELD-CAVLMVSHD 180 (251)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecC
Confidence 46778886 89999999999999998865323 355555543
No 300
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=22.04 E-value=2.5e+02 Score=22.26 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+..+... .+|+.+.
T Consensus 172 lllLDEPt--~~LD~~~~~~~~~~l~~~~~~~~~-tiiivsH 210 (268)
T PRK10419 172 LLILDEAV--SNLDLVLQAGVIRLLKKLQQQFGT-ACLFITH 210 (268)
T ss_pred EEEEeCCC--cccCHHHHHHHHHHHHHHHHHcCc-EEEEEEC
Confidence 46678885 899999999999999888653333 4444443
No 301
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.00 E-value=3e+02 Score=19.54 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.+...+ . +.+++++.
T Consensus 101 i~ilDEp~--~~lD~~~~~~l~~~l~~~~~~-~-~tii~~sh 138 (157)
T cd00267 101 LLLLDEPT--SGLDPASRERLLELLRELAEE-G-RTVIIVTH 138 (157)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 46678885 899999999999999988654 3 45555554
No 302
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.93 E-value=3.2e+02 Score=20.32 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+ . +.+++.+.
T Consensus 129 vlllDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiiivtH 166 (192)
T cd03232 129 ILFLDEPT--SGLDSQAAYNIVRFLKKLADS-G-QAILCTIH 166 (192)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHc-C-CEEEEEEc
Confidence 56778886 899999999999999988653 3 34555543
No 303
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=21.92 E-value=2.7e+02 Score=21.14 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.. +.+|+.+.
T Consensus 162 illlDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sh 200 (220)
T TIGR02982 162 LVLADEPT--AALDSKSGRDVVELMQKLAREQG-CTILIVTH 200 (220)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 46678885 89999999999999998865333 55555554
No 304
>PTZ00293 thymidine kinase; Provisional
Probab=21.85 E-value=2.5e+02 Score=21.90 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEE-----cchhcchhhHHhhhcCEEE--------EeCCeEEecC
Q 041986 92 RTLYSFVYLVATYSKPHVAIM-----DGITMGGGAGIAVHASYRL--------ATEKTVFAMP 141 (195)
Q Consensus 92 ~~~~~l~~~l~~~~~p~Iaav-----~G~~~g~G~~l~l~~D~~i--------a~~~a~~~~p 141 (195)
..+.++.+.+....+|||++- .|.-+++-..|...||-+. +..+|+|..-
T Consensus 90 ~~i~~~~~~l~~~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~kl~aiC~~CG~~A~~t~R 152 (211)
T PTZ00293 90 PDLVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERVTKLTAVCMFCGKEASFSKR 152 (211)
T ss_pred HhHHHHHHHHHHCCCeEEEEecCcccccCcCccHHHHHHhhCEEEEcceEchhhCCcceeEEE
Confidence 456677888889999999984 6888888889999999875 2356766554
No 305
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=21.83 E-value=1.8e+02 Score=26.18 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=42.5
Q ss_pred CCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEE
Q 041986 51 NSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130 (195)
Q Consensus 51 ~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ 130 (195)
.|++-++|-|-..=-+..|.+...+ .+.+.+...+-+.+..+-++.+..+.+|+|.++|-..-=.-.|+.+.+++.
T Consensus 321 ~P~~~VlVaTvRALK~HGG~~~~~l----~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~~ 396 (557)
T PF01268_consen 321 KPDAVVLVATVRALKMHGGVAKDDL----NEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIRELC 396 (557)
T ss_dssp --SEEEEEEEHHHHHHHTT--GGGT----TS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHHC
T ss_pred CcceEEEeeechHHHhhcCCCcccc----CccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 3554444444432223444444432 234445566667777777888889999999999988877778888877764
No 306
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=21.81 E-value=2.9e+02 Score=20.69 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+ . +.+|+.+.
T Consensus 157 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~-~tiiivtH 194 (214)
T cd03292 157 ILIADEPT--GNLDPDTTWEIMNLLKKINKA-G-TTVVVATH 194 (214)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHc-C-CEEEEEeC
Confidence 46778886 899999999999999988643 3 35555554
No 307
>PF13479 AAA_24: AAA domain
Probab=21.61 E-value=2.6e+02 Score=21.36 Aligned_cols=102 Identities=10% Similarity=0.067 Sum_probs=50.5
Q ss_pred ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCCc--eeccccchh---HHHh-hhc
Q 041986 9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWEN-NSGVDFVVIKGNGRS--FCAGGDVVG---AYRM-LKE 81 (195)
Q Consensus 9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~-~~~~~~vvl~~~g~~--F~~G~dl~~---~~~~-~~~ 81 (195)
..+.++-+++...+.... ....+......++.++++.++. ..+++.|||-+.... .|...=+.. .... ...
T Consensus 25 k~l~id~E~g~~~~~~~~--~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~ 102 (213)
T PF13479_consen 25 KPLFIDTENGSDSLKFLD--DGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDP 102 (213)
T ss_pred CeEEEEeCCCccchhhhc--CCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCC
Confidence 355666666643332211 1234445567777777777643 368999999886421 111100000 0000 000
Q ss_pred ccHHHHHHHHHHHHHHHHHHhh-CCCcEEEEE
Q 041986 82 GRVEECKELFRTLYSFVYLVAT-YSKPHVAIM 112 (195)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~-~~~p~Iaav 112 (195)
........+...+.++++.+.+ .++.+|...
T Consensus 103 ~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~ta 134 (213)
T PF13479_consen 103 DYGKGYGELQQEFMRFIDKLLNALGKNVIFTA 134 (213)
T ss_pred cccchHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 1122233444556667776655 888887753
No 308
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=21.52 E-value=1.3e+02 Score=27.03 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+.|+.|. |-+|.+.++.|..+|..++. +||+-+..
T Consensus 503 lLVLDEPT--NhLD~dsl~AL~~Al~~F~G-----GVv~VSHd 538 (582)
T KOG0062|consen 503 LLVLDEPT--NHLDRDSLGALAKALKNFNG-----GVVLVSHD 538 (582)
T ss_pred EEEecCCC--ccccHHHHHHHHHHHHhcCC-----cEEEEECc
Confidence 46778886 99999999999999999863 44444443
No 309
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=21.37 E-value=2e+02 Score=19.23 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH---------HHhhCC
Q 041986 36 SMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY---------LVATYS 105 (195)
Q Consensus 36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~l~~~~ 105 (195)
..++.|.+.+... .+++++.++-|.. +.+..+.|+.-....... .....+......+.++ .+.+..
T Consensus 4 ~i~~~l~~~i~~~--~~~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~i~~Ar 79 (114)
T cd05402 4 EVLDRLQELIKEW--FPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNH--RVDREDFLRKLAKLLKKSGEVVEVEPIINAR 79 (114)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEecccccCCCCCCCCeeEEEEeCCC--CccHHHHHHHHHHHHHhCCCceeeEEeccCC
Confidence 4556666766665 4667777666654 555555566543332221 0011122222222222 234577
Q ss_pred CcEEEEEcchhcchhhHHhhhcCEEEEe
Q 041986 106 KPHVAIMDGITMGGGAGIAVHASYRLAT 133 (195)
Q Consensus 106 ~p~Iaav~G~~~g~G~~l~l~~D~~ia~ 133 (195)
+|+|-....+ --+.||+.+..
T Consensus 80 VPiik~~~~~-------~~i~~Dis~~~ 100 (114)
T cd05402 80 VPIIKFVDKP-------TGIEVDISFNN 100 (114)
T ss_pred CCEEEEEEcC-------CCeEEEEEccc
Confidence 8888887765 23566766554
No 310
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=21.31 E-value=3.3e+02 Score=20.24 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+ . +.+|+++.
T Consensus 148 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~sH 185 (198)
T TIGR01189 148 LWILDEPT--TALDKAGVALLAGLLRAHLAR-G-GIVLLTTH 185 (198)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHhC-C-CEEEEEEc
Confidence 56788886 999999999999999987543 3 35555554
No 311
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=21.30 E-value=2e+02 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCE
Q 041986 83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129 (195)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~ 129 (195)
+.+...+-..+..+-++.+..+.+|+|.++|-..--.-.|+.+..++
T Consensus 334 n~~al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~ 380 (524)
T cd00477 334 NLEALEKGFANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKL 380 (524)
T ss_pred CHHHHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 44445555667777777788899999999998876666666665554
No 312
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=21.29 E-value=2.9e+02 Score=20.72 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++.. .. +.+|+++.
T Consensus 147 llllDEPt--~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH 184 (208)
T cd03268 147 LLILDEPT--NGLDPDGIKELRELILSLRD-QG-ITVLISSH 184 (208)
T ss_pred EEEECCCc--ccCCHHHHHHHHHHHHHHHH-CC-CEEEEEcC
Confidence 56788886 99999999999999998865 23 45655554
No 313
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.25 E-value=3.2e+02 Score=20.57 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.|.+.... . +.+++++.
T Consensus 148 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sH 185 (207)
T PRK13539 148 IWILDEPT--AALDAAAVALFAELIRAHLAQ-G-GIVIAATH 185 (207)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 46678886 999999999999999987543 3 35555554
No 314
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=21.24 E-value=3e+02 Score=21.54 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++... . +.+++.+.
T Consensus 173 llllDEPt--~~LD~~~~~~l~~~l~~l~~~-g-~tiiivsH 210 (257)
T PRK10619 173 VLLFDEPT--SALDPELVGEVLRIMQQLAEE-G-KTMVVVTH 210 (257)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHhc-C-CEEEEEeC
Confidence 46678885 999999999999999988643 3 44455444
No 315
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=21.11 E-value=3.2e+02 Score=20.57 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.|.++..+ . +.+|+++.
T Consensus 157 illlDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~tH 194 (218)
T cd03266 157 VLLLDEPT--TGLDVMATRALREFIRQLRAL-G-KCILFSTH 194 (218)
T ss_pred EEEEcCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 56778886 899999999999999988643 3 35555554
No 316
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.06 E-value=2.8e+02 Score=20.79 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+ . +.|++++.
T Consensus 149 ~lllDEP~--~~LD~~~~~~~~~~l~~~~~~-~-~tii~~sH 186 (210)
T cd03269 149 LLILDEPF--SGLDPVNVELLKDVIRELARA-G-KTVILSTH 186 (210)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEECC
Confidence 46678886 999999999999999988643 3 46666654
No 317
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=21.05 E-value=3.1e+02 Score=20.99 Aligned_cols=38 Identities=5% Similarity=0.163 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+... . +.||+++.
T Consensus 163 llllDEP~--~gLD~~~~~~~~~~l~~~~~~-~-~tiii~sH 200 (224)
T cd03220 163 ILLIDEVL--AVGDAAFQEKCQRRLRELLKQ-G-KTVILVSH 200 (224)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHhC-C-CEEEEEeC
Confidence 56778886 899999999999999888653 3 35666654
No 318
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=20.98 E-value=4e+02 Score=20.59 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=24.1
Q ss_pred CCCCC---HHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 30 LNALN---TSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 30 ~N~~~---~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.|.+. .+.++++.+.++++.. +..+||++|.
T Consensus 17 ~~~~g~~~~~~~~~i~~~~~~~~~--~~D~viiaGD 50 (232)
T cd07393 17 MDVFGPEWKNHTEKIKENWDNVVA--PEDIVLIPGD 50 (232)
T ss_pred CcccCccHHHHHHHHHHHHHhcCC--CCCEEEEcCC
Confidence 46666 5888888888888863 5679999986
No 319
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.95 E-value=2.9e+02 Score=22.02 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.. ..|++++.
T Consensus 158 llilDEPt--~gLD~~~~~~l~~~l~~l~~~~g-~tvli~tH 196 (277)
T PRK13652 158 VLVLDEPT--AGLDPQGVKELIDFLNDLPETYG-MTVIFSTH 196 (277)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEec
Confidence 46778885 89999999999999988865433 34555554
No 320
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.90 E-value=2.8e+02 Score=22.24 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG 61 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~ 61 (195)
.+.++.|. +.+|.....++.+.+..+..+.+. .||+.+
T Consensus 165 llllDEPt--~gLD~~~~~~l~~~l~~l~~~~g~-tvi~vt 202 (287)
T PRK13637 165 ILILDEPT--AGLDPKGRDEILNKIKELHKEYNM-TIILVS 202 (287)
T ss_pred EEEEECCc--cCCCHHHHHHHHHHHHHHHHhcCC-EEEEEe
Confidence 46778885 899999999999999988654333 444444
No 321
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=20.77 E-value=3.3e+02 Score=20.62 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCCCCCHHHHH-HHHHHHHHHhcCCCceEEEEEeC
Q 041986 20 RTVILNRPHVLNALNTSMVA-LLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~-~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
-.+.++.|. +.+|+.... .+.+.+.++..+... .+++++.
T Consensus 141 ~illlDEP~--~~LD~~~~~~~l~~~l~~~~~~~~~-~iiiitH 181 (204)
T cd03240 141 GILALDEPT--TNLDEENIEESLAEIIEERKSQKNF-QLIVITH 181 (204)
T ss_pred CEEEEcCCc--cccCHHHHHHHHHHHHHHHHhccCC-EEEEEEe
Confidence 457788886 899999999 999999888653333 4544443
No 322
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=20.75 E-value=3.1e+02 Score=21.44 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+..+... + +.+|+++.
T Consensus 159 llllDEP~--~~LD~~~~~~l~~~l~~l~~~-~-~tiii~tH 196 (255)
T PRK11231 159 VVLLDEPT--TYLDINHQVELMRLMRELNTQ-G-KTVVTVLH 196 (255)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHC-C-CEEEEEEC
Confidence 46778886 999999999999999887643 3 45555554
No 323
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=20.74 E-value=2.9e+02 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+... .|++++.
T Consensus 161 lLlLDEPt--~~LD~~~~~~l~~~L~~~~~~~g~-til~~sH 199 (254)
T PRK10418 161 FIIADEPT--TDLDVVAQARILDLLESIVQKRAL-GMLLVTH 199 (254)
T ss_pred EEEEeCCC--cccCHHHHHHHHHHHHHHHHhcCc-EEEEEec
Confidence 56778886 899999999999999887653333 4555544
No 324
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=20.65 E-value=2.8e+02 Score=21.23 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|......+.+.+.++..+.. +.|++++.
T Consensus 146 vllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH 184 (230)
T TIGR02770 146 FLIADEPT--TDLDVVNQARVLKLLRELRQLFG-TGILLITH 184 (230)
T ss_pred EEEEcCCc--cccCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 56778885 89999999999999988764322 35555554
No 325
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.63 E-value=2.9e+02 Score=22.12 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+..+.+. .|++.+.
T Consensus 162 lLilDEPt--~gLD~~~~~~l~~~l~~l~~~~g~-tillvsH 200 (283)
T PRK13636 162 VLVLDEPT--AGLDPMGVSEIMKLLVEMQKELGL-TIIIATH 200 (283)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHhCCC-EEEEEec
Confidence 46678886 899999999999999888654333 4555554
No 326
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=20.55 E-value=2.8e+02 Score=23.23 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=30.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|- +.+|+....++.+.|.++..+..+..|++|-.
T Consensus 161 iLLlDEPt--s~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 161 VLLCDEAT--SALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45667775 89999999999999999976545555555543
No 327
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=20.33 E-value=3e+02 Score=20.94 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+..+.. . +.+|+++.
T Consensus 171 llllDEPt--~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh 207 (226)
T cd03248 171 VLILDEAT--SALDAESEQQVQQALYDWPE--R-RTVLVIAH 207 (226)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHcC--C-CEEEEEEC
Confidence 46778885 89999999999999988754 3 45666554
No 328
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.14 E-value=3.1e+02 Score=21.73 Aligned_cols=39 Identities=8% Similarity=0.160 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
.+.++.|. +.+|.....++.+.+.++..+.. +.+++++.
T Consensus 181 illLDEPt--~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH 219 (269)
T cd03294 181 ILLMDEAF--SALDPLIRREMQDELLRLQAELQ-KTIVFITH 219 (269)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46678886 89999999999999998864333 45555554
No 329
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=20.09 E-value=1.2e+02 Score=19.98 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCce
Q 041986 40 LLTKQYESWENNSGVDFVVIKGNGRSF 66 (195)
Q Consensus 40 ~l~~~l~~~~~~~~~~~vvl~~~g~~F 66 (195)
.+.++|+.-.. .+++-++||++|+.|
T Consensus 10 AifQ~L~~~~~-~~v~~i~lTASGGpF 35 (84)
T PF08436_consen 10 AIFQCLQGEKR-EEVEKIILTASGGPF 35 (84)
T ss_dssp HHHHHSGHHHH-CTEEEEEEEE--STT
T ss_pred HHHHHCCCCCc-cccCEEEEECcchhh
Confidence 34444444433 469999999988665
No 330
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.06 E-value=2.7e+02 Score=22.52 Aligned_cols=38 Identities=11% Similarity=0.270 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 041986 21 TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63 (195)
Q Consensus 21 ~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g 63 (195)
.+.++.|. +.+|+...+++.+.+.++.. + +.|++++..
T Consensus 154 lliLDEPt--~gLD~~~~~~l~~~l~~~~~--~-~tiii~sH~ 191 (301)
T TIGR03522 154 VLILDEPT--TGLDPNQLVEIRNVIKNIGK--D-KTIILSTHI 191 (301)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCC
Confidence 56788886 99999999999999999853 3 677777753
No 331
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=20.05 E-value=2.6e+02 Score=25.42 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEE
Q 041986 82 GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130 (195)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ 130 (195)
.+.+...+-..+..+-++.+..+.+|+|.++|-..--.-.|+.+..++.
T Consensus 378 enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~ 426 (587)
T PRK13507 378 ENVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLA 426 (587)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 3444555556666666777788999999999988766666776665543
No 332
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=20.04 E-value=4.6e+02 Score=20.95 Aligned_cols=73 Identities=8% Similarity=0.012 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc--HHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986 34 NTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR--VEECKELFRTLYSFVYLVATYSKPHVAI 111 (195)
Q Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~p~Iaa 111 (195)
+......+.+.|.+-+....+.+||++-. +.++.....+.+ ......+...+.++.+. .....||-..
T Consensus 6 d~~~W~~~L~lL~~~R~r~PlnGvil~vs---------~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~-lg~~~PVYvv 75 (266)
T PF14331_consen 6 DAAEWQAFLDLLRRHRPRQPLNGVILTVS---------VDDLLNADEAERELEALARALRQRLEELQRT-LGVRLPVYVV 75 (266)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEEE---------HHHHhcCChhhhHHHHHHHHHHHHHHHHHHH-hCCCCCeEee
Confidence 55677888888888887777999999974 344433222211 22233333444444443 3578888777
Q ss_pred Ecchh
Q 041986 112 MDGIT 116 (195)
Q Consensus 112 v~G~~ 116 (195)
+.+--
T Consensus 76 ~Tk~D 80 (266)
T PF14331_consen 76 FTKCD 80 (266)
T ss_pred eECCC
Confidence 76543
No 333
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=20.04 E-value=3e+02 Score=21.63 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 041986 20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62 (195)
Q Consensus 20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~ 62 (195)
-.+.++.|. +.+|......+.+.+.++..+.. +.||+++.
T Consensus 160 ~lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH 199 (258)
T PRK13548 160 RWLLLDEPT--SALDLAHQHHVLRLARQLAHERG-LAVIVVLH 199 (258)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEEC
Confidence 357788886 89999999999999998863233 45666654
Done!