Query 041987
Match_columns 280
No_of_seqs 111 out of 1272
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 8.6E-35 1.9E-39 260.6 25.3 267 9-279 9-311 (358)
2 PRK11272 putative DMT superfam 100.0 5E-31 1.1E-35 231.8 25.7 250 13-279 8-268 (292)
3 PRK11453 O-acetylserine/cystei 100.0 6.7E-30 1.4E-34 225.3 26.0 250 14-279 5-270 (299)
4 PRK10532 threonine and homoser 100.0 4.8E-30 1E-34 225.6 24.5 251 7-279 6-264 (293)
5 PRK11689 aromatic amino acid e 100.0 2.9E-30 6.2E-35 227.3 22.7 250 11-279 2-270 (295)
6 TIGR00950 2A78 Carboxylate/Ami 100.0 2.6E-29 5.7E-34 217.0 21.7 240 25-279 1-247 (260)
7 PRK15430 putative chlorampheni 100.0 5.4E-29 1.2E-33 219.2 20.2 255 7-279 2-268 (296)
8 TIGR00688 rarD rarD protein. T 100.0 1.1E-26 2.4E-31 200.5 21.5 239 13-271 2-255 (256)
9 TIGR00817 tpt Tpt phosphate/ph 99.9 1.2E-24 2.6E-29 192.2 21.8 255 18-279 7-276 (302)
10 TIGR03340 phn_DUF6 phosphonate 99.9 2.1E-24 4.6E-29 188.7 21.6 250 15-279 3-266 (281)
11 PTZ00343 triose or hexose phos 99.9 2.9E-22 6.3E-27 180.1 22.5 262 11-279 47-331 (350)
12 COG0697 RhaT Permeases of the 99.9 6.1E-21 1.3E-25 166.5 26.0 255 9-279 3-270 (292)
13 COG5006 rhtA Threonine/homoser 99.8 8.6E-19 1.9E-23 144.6 18.9 247 14-280 13-266 (292)
14 TIGR00776 RhaT RhaT L-rhamnose 99.8 3.8E-18 8.2E-23 149.7 22.6 245 14-279 2-267 (290)
15 PF06027 DUF914: Eukaryotic pr 99.8 4E-17 8.7E-22 144.1 25.1 253 18-278 19-287 (334)
16 COG2962 RarD Predicted permeas 99.7 1.6E-16 3.6E-21 134.4 18.1 257 9-278 3-265 (293)
17 KOG4510 Permease of the drug/m 99.7 2.2E-18 4.7E-23 143.2 3.9 253 12-279 37-308 (346)
18 PF08449 UAA: UAA transporter 99.5 3.4E-11 7.5E-16 106.4 24.6 231 41-279 31-280 (303)
19 PF00892 EamA: EamA-like trans 99.4 1.9E-12 4.1E-17 98.7 8.6 109 23-136 1-109 (126)
20 COG2510 Predicted membrane pro 99.3 9.5E-12 2.1E-16 92.7 9.3 120 13-136 3-122 (140)
21 KOG2765 Predicted membrane pro 99.3 3.3E-11 7.1E-16 105.3 14.0 187 92-278 170-372 (416)
22 COG2510 Predicted membrane pro 99.2 2.2E-10 4.7E-15 85.5 11.0 116 158-279 4-122 (140)
23 PF00892 EamA: EamA-like trans 99.2 1.9E-11 4.2E-16 93.1 5.6 109 167-279 1-109 (126)
24 KOG1441 Glucose-6-phosphate/ph 99.2 1.3E-09 2.8E-14 95.6 16.1 245 30-279 34-290 (316)
25 TIGR00950 2A78 Carboxylate/Ami 99.2 1.4E-09 3.1E-14 93.7 15.2 122 9-136 124-247 (260)
26 PF04142 Nuc_sug_transp: Nucle 99.0 8E-08 1.7E-12 82.1 18.7 201 75-278 12-235 (244)
27 PF13536 EmrE: Multidrug resis 98.9 1.8E-09 3.8E-14 81.4 5.0 88 47-136 2-89 (113)
28 PRK10532 threonine and homoser 98.8 4.6E-07 1E-11 79.7 16.3 135 12-171 147-281 (293)
29 PRK11272 putative DMT superfam 98.8 2.6E-07 5.6E-12 81.3 14.3 122 10-136 147-268 (292)
30 PRK15430 putative chlorampheni 98.7 1E-07 2.2E-12 84.1 10.7 123 153-279 4-128 (296)
31 KOG1444 Nucleotide-sugar trans 98.7 3.8E-06 8.3E-11 72.7 19.3 260 14-279 13-283 (314)
32 KOG2234 Predicted UDP-galactos 98.7 1.6E-05 3.4E-10 70.0 22.2 259 13-278 15-304 (345)
33 KOG1581 UDP-galactose transpor 98.7 9E-06 1.9E-10 69.9 20.0 233 40-280 49-297 (327)
34 KOG2766 Predicted membrane pro 98.6 3.1E-07 6.7E-12 76.8 9.9 246 17-278 23-281 (336)
35 TIGR03340 phn_DUF6 phosphonate 98.6 4.8E-07 1E-11 79.1 11.2 116 159-279 3-118 (281)
36 TIGR00688 rarD rarD protein. T 98.6 2.9E-07 6.3E-12 79.3 9.7 120 157-279 2-125 (256)
37 PRK11689 aromatic amino acid e 98.4 5.2E-06 1.1E-10 73.2 13.5 116 12-136 155-270 (295)
38 KOG1443 Predicted integral mem 98.4 4.9E-05 1.1E-09 65.4 18.1 248 28-278 32-297 (349)
39 PF03151 TPT: Triose-phosphate 98.4 3E-06 6.5E-11 67.0 10.2 121 158-279 1-136 (153)
40 PLN00411 nodulin MtN21 family 98.3 1.8E-05 4E-10 71.4 14.1 120 13-136 189-311 (358)
41 PF06800 Sugar_transport: Suga 98.3 6.9E-05 1.5E-09 64.4 16.0 189 77-277 42-248 (269)
42 PRK11453 O-acetylserine/cystei 98.2 5.1E-05 1.1E-09 66.9 15.1 124 12-136 142-270 (299)
43 KOG1442 GDP-fucose transporter 98.2 3.5E-05 7.6E-10 65.4 12.0 234 41-277 60-308 (347)
44 KOG1580 UDP-galactose transpor 98.2 2.7E-05 5.8E-10 64.7 11.0 186 89-278 93-295 (337)
45 TIGR00817 tpt Tpt phosphate/ph 98.2 1.3E-05 2.8E-10 70.8 9.9 141 10-170 142-292 (302)
46 PF03151 TPT: Triose-phosphate 98.1 0.00023 5.1E-09 56.0 14.2 121 14-136 1-136 (153)
47 PTZ00343 triose or hexose phos 98.0 0.00065 1.4E-08 61.4 17.1 126 10-136 191-331 (350)
48 COG0697 RhaT Permeases of the 97.9 0.00034 7.5E-09 60.6 14.3 117 12-136 153-270 (292)
49 PRK02971 4-amino-4-deoxy-L-ara 97.8 0.00015 3.3E-09 55.7 8.5 102 157-279 2-105 (129)
50 TIGR00776 RhaT RhaT L-rhamnose 97.7 0.00054 1.2E-08 60.2 12.3 112 12-136 151-267 (290)
51 PRK13499 rhamnose-proton sympo 97.7 0.015 3.3E-07 52.0 20.7 258 10-277 4-316 (345)
52 PF13536 EmrE: Multidrug resis 97.7 0.00012 2.6E-09 54.9 6.3 87 192-279 3-89 (113)
53 KOG3912 Predicted integral mem 97.5 0.0028 6E-08 54.3 12.8 175 26-205 16-225 (372)
54 COG5070 VRG4 Nucleotide-sugar 97.4 0.00047 1E-08 57.0 7.0 185 94-279 81-279 (309)
55 COG2962 RarD Predicted permeas 97.4 0.0012 2.7E-08 56.8 9.5 123 154-279 4-127 (293)
56 PRK15051 4-amino-4-deoxy-L-ara 97.4 0.0006 1.3E-08 51.0 6.1 51 229-279 42-92 (111)
57 PRK15051 4-amino-4-deoxy-L-ara 97.3 0.0012 2.5E-08 49.4 7.2 54 83-136 39-92 (111)
58 KOG4314 Predicted carbohydrate 97.2 0.005 1.1E-07 50.0 10.6 87 93-183 65-161 (290)
59 PF06027 DUF914: Eukaryotic pr 97.1 0.012 2.6E-07 52.6 12.6 125 9-136 164-288 (334)
60 PF05653 Mg_trans_NIPA: Magnes 97.1 0.072 1.6E-06 47.1 17.1 102 10-136 4-105 (300)
61 COG5006 rhtA Threonine/homoser 97.0 0.017 3.6E-07 48.9 11.6 120 11-136 146-265 (292)
62 TIGR00803 nst UDP-galactose tr 96.9 0.0068 1.5E-07 51.0 9.2 122 154-279 82-207 (222)
63 KOG1582 UDP-galactose transpor 96.7 0.0043 9.4E-08 52.9 6.3 243 26-278 56-314 (367)
64 PRK02971 4-amino-4-deoxy-L-ara 96.5 0.03 6.4E-07 43.0 9.1 102 13-136 2-105 (129)
65 PF06800 Sugar_transport: Suga 96.3 0.081 1.8E-06 45.7 11.8 117 9-136 134-250 (269)
66 KOG4510 Permease of the drug/m 96.1 0.0024 5.1E-08 54.3 1.0 118 153-278 34-151 (346)
67 KOG2922 Uncharacterized conser 95.6 0.11 2.3E-06 45.7 9.2 105 7-136 15-119 (335)
68 COG4975 GlcU Putative glucose 95.5 0.0034 7.3E-08 52.8 -0.1 243 13-277 2-262 (288)
69 PF00893 Multi_Drug_Res: Small 94.8 0.13 2.8E-06 37.0 6.3 50 231-280 36-86 (93)
70 PF08449 UAA: UAA transporter 94.5 0.68 1.5E-05 40.8 11.6 121 14-136 155-280 (303)
71 PF00893 Multi_Drug_Res: Small 93.2 0.27 5.9E-06 35.3 5.5 49 88-136 36-85 (93)
72 PF04657 DUF606: Protein of un 93.2 0.99 2.1E-05 35.0 8.9 108 159-270 3-111 (138)
73 PF05653 Mg_trans_NIPA: Magnes 92.2 0.54 1.2E-05 41.6 7.0 102 153-279 3-105 (300)
74 PF04657 DUF606: Protein of un 90.7 5.9 0.00013 30.7 10.7 105 17-127 5-111 (138)
75 PRK13499 rhamnose-proton sympo 90.5 11 0.00023 34.1 13.4 124 9-134 170-316 (345)
76 KOG1441 Glucose-6-phosphate/ph 89.8 0.64 1.4E-05 41.3 5.1 103 173-278 33-137 (316)
77 PRK09541 emrE multidrug efflux 88.4 0.66 1.4E-05 34.5 3.6 49 231-279 37-86 (110)
78 PRK10452 multidrug efflux syst 87.8 0.77 1.7E-05 34.7 3.7 49 231-279 37-86 (120)
79 KOG1583 UDP-N-acetylglucosamin 87.4 16 0.00034 31.8 11.7 193 73-278 60-296 (330)
80 PF10639 UPF0546: Uncharacteri 86.9 2.8 6.1E-05 31.3 6.1 95 19-136 2-97 (113)
81 PRK10650 multidrug efflux syst 86.8 3.4 7.3E-05 30.7 6.6 49 231-279 42-91 (109)
82 PRK10452 multidrug efflux syst 86.5 2.2 4.7E-05 32.2 5.5 50 87-136 36-86 (120)
83 PRK09541 emrE multidrug efflux 85.6 3.8 8.2E-05 30.4 6.3 50 87-136 36-86 (110)
84 KOG1444 Nucleotide-sugar trans 81.7 23 0.00049 31.4 10.4 144 11-174 155-303 (314)
85 KOG2765 Predicted membrane pro 81.2 8.4 0.00018 34.9 7.7 123 11-136 245-373 (416)
86 COG2076 EmrE Membrane transpor 81.0 5.8 0.00013 29.2 5.6 49 88-136 37-86 (106)
87 PRK10650 multidrug efflux syst 80.7 21 0.00044 26.5 9.6 49 88-136 42-91 (109)
88 PRK11431 multidrug efflux syst 80.3 2.5 5.4E-05 31.1 3.6 49 231-279 36-85 (105)
89 PRK11431 multidrug efflux syst 79.8 8.5 0.00019 28.3 6.3 49 88-136 36-85 (105)
90 COG2076 EmrE Membrane transpor 78.9 3.8 8.3E-05 30.1 4.1 47 233-279 39-86 (106)
91 COG3238 Uncharacterized protei 77.9 18 0.0004 28.4 7.9 112 156-270 4-116 (150)
92 COG4975 GlcU Putative glucose 73.4 2 4.4E-05 36.5 1.6 111 158-278 3-114 (288)
93 TIGR00803 nst UDP-galactose tr 71.8 47 0.001 27.5 9.6 45 92-136 163-207 (222)
94 KOG2922 Uncharacterized conser 68.5 5.8 0.00013 35.1 3.4 104 151-278 15-118 (335)
95 PF04142 Nuc_sug_transp: Nucle 53.0 1.4E+02 0.0031 25.3 14.1 120 11-136 112-236 (244)
96 PF06570 DUF1129: Protein of u 43.4 1.9E+02 0.004 23.9 11.7 11 126-136 194-204 (206)
97 PF07698 7TM-7TMR_HD: 7TM rece 42.0 1.8E+02 0.004 23.4 12.1 28 109-136 59-87 (194)
98 PF06570 DUF1129: Protein of u 39.3 91 0.002 25.7 5.8 20 14-33 112-131 (206)
99 KOG4314 Predicted carbohydrate 35.9 28 0.0006 28.8 2.1 41 237-277 66-106 (290)
100 PF07857 DUF1632: CEO family ( 35.4 1.2E+02 0.0025 26.2 5.9 56 9-64 179-245 (254)
101 KOG1580 UDP-galactose transpor 31.6 46 0.00099 28.4 2.7 119 14-136 173-296 (337)
102 COG5070 VRG4 Nucleotide-sugar 31.4 3.3E+02 0.0072 23.2 10.7 113 40-172 183-297 (309)
103 PF06379 RhaT: L-rhamnose-prot 26.5 3.3E+02 0.0072 24.6 7.3 115 153-271 3-121 (344)
104 COG3238 Uncharacterized protei 25.2 3.4E+02 0.0074 21.3 9.9 52 13-64 5-56 (150)
105 PF12832 MFS_1_like: MFS_1 lik 24.4 1.5E+02 0.0033 20.1 4.0 16 233-248 47-62 (77)
106 COG4858 Uncharacterized membra 21.8 2.8E+02 0.006 22.8 5.4 64 5-70 155-218 (226)
107 CHL00196 psbY photosystem II p 20.5 1.9E+02 0.0042 16.8 3.2 19 158-176 7-25 (36)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=8.6e-35 Score=260.65 Aligned_cols=267 Identities=28% Similarity=0.513 Sum_probs=215.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 041987 9 EEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGL 88 (280)
Q Consensus 9 ~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 88 (280)
+++.|+++.|+.+.++.+...++.|.+++.|++|..+.++|+.+|+++++++.+.+ +|+++. ++.+++++.++.+.|+
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~-~~~~~~-~~~~~~~~~~l~l~g~ 86 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT-NRSRSL-PPLSVSILSKIGLLGF 86 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH-HHhccc-CcchHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999988765 443221 4556888899999999
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHh------hccccCCc---ce-------eeeCC-CCCC----
Q 041987 89 TGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIIT------RKAASDDK---LE-------AKINP-PLLI---- 147 (280)
Q Consensus 89 ~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~------~~ek~~~~---g~-------~ii~~-~~~~---- 147 (280)
++ +.++.+++.|++|+++++++++.+++|++++++++++ +|||++++ |+ .++.. ....
T Consensus 87 ~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~ 165 (358)
T PLN00411 87 LG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA 165 (358)
T ss_pred HH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 98 5778899999999999999999999999999999999 58999887 32 22211 1000
Q ss_pred --------------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhccc-c
Q 041987 148 --------------FYSTPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERN-I 212 (280)
Q Consensus 148 --------------~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 212 (280)
...+..+...|+++.++++++||+|++++|+..+++++....+.+++.++++...+..+..+++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~ 245 (358)
T PLN00411 166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245 (358)
T ss_pred cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 0011123356999999999999999999999988887455778888888888887776665432 2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 213 NAWKLKLNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 213 ~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
..|....+.....++|.+++ +.++|.+|++++|+.||+++|++.+++|++++++|++++||++++.
T Consensus 246 ~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~ 311 (358)
T PLN00411 246 SVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG 311 (358)
T ss_pred ccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH
Confidence 23322222335567788875 6689999999999999999999999999999999999999999975
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=5e-31 Score=231.79 Aligned_cols=250 Identities=16% Similarity=0.087 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 041987 13 VPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVA 92 (280)
Q Consensus 13 ~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~ 92 (280)
.-.+.+++..++||++++++|.+.++ +||.+++++|+.+++++++++...+ ++ + +.+++++.+....|.++..
T Consensus 8 ~~~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~-~~--~---~~~~~~~~~~~~~g~~~~~ 80 (292)
T PRK11272 8 PLFGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLR-GH--P---LPTLRQWLNAALIGLLLLA 80 (292)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHh-CC--C---CCcHHHHHHHHHHHHHHHH
Confidence 34667888999999999999999885 9999999999999999998876543 22 2 1245667778888888766
Q ss_pred HHHHHHHHHh-hccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-------eeeCCCCCCCCCCCchhHHHHHH
Q 041987 93 ISQNLAFFGL-YYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-------AKINPPLLIFYSTPDRWVLGSTL 161 (280)
Q Consensus 93 ~~~~~~~~~l-~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-------~ii~~~~~~~~~~~~~~~~G~~~ 161 (280)
.++.+++.+. ++++++.++++.++.|+++++++.+ +|||++++ |+ .++... ++.+.+..|+.+
T Consensus 81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~-----~~~~~~~~G~l~ 154 (292)
T PRK11272 81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG-----GNLSGNPWGAIL 154 (292)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC-----cccccchHHHHH
Confidence 7788899999 9999999999999999999999986 69999998 32 112111 112234579999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 041987 162 LAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRSTVH 241 (280)
Q Consensus 162 ~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~ 241 (280)
.++++++||.+.+..||..++ + +...+.+++.++++.+.+.....+.+. ...++...|..+++.++++++++|.+|
T Consensus 155 ~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~i~~s~~~~~l~ 230 (292)
T PRK11272 155 ILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERL--TALPTLSGFLALGYLAVFGSIIAISAY 230 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCcc--cccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987543 2 456677888888888877765443321 111233468888999999999999999
Q ss_pred HhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 242 VSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 242 ~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
++++|+.++++++.+.++||+++.+++++++||++|+.
T Consensus 231 ~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~ 268 (292)
T PRK11272 231 MYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI 268 (292)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 99999999999999999999999999999999999864
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.97 E-value=6.7e-30 Score=225.34 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 041987 14 PFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAI 93 (280)
Q Consensus 14 ~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~ 93 (280)
..+..++++++||++++++|.++++ +||.++.++|+.++++.++++. .++ |.+++ .....|+.....
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~----~~~-----~~~~~---~~~~~g~~~~~~ 71 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV----ARP-----KVPLN---LLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh----cCC-----CCchH---HHHHHHHHHHHH
Confidence 3456889999999999999999987 9999999999999887766543 121 12222 233345554445
Q ss_pred HHHHHHHHhhc-cchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-------eeeCCCCCCCCCCCchhHHHHHHH
Q 041987 94 SQNLAFFGLYY-SSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-------AKINPPLLIFYSTPDRWVLGSTLL 162 (280)
Q Consensus 94 ~~~~~~~~l~~-~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-------~ii~~~~~~~~~~~~~~~~G~~~~ 162 (280)
++.+++.+++| .+++.++++.+++|+++.+++++++|||++++ |+ .++... ..++.+.+..|+.++
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~---~~~~~~~~~~G~~l~ 148 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED---SLNGQHVAMLGFMLT 148 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc---cCCCcchhHHHHHHH
Confidence 56678899998 58899999999999999999999999999998 22 222211 111222335799999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCc--hHHHHHHHHHHHHHHHHHHHhhcccc---cccccchhhHHHHHHHHHHHHHHHH
Q 041987 163 AASSLSVCVWNIIQVGTIKQYPQV--MKVVSFYSLAGTIQCSIFSLIMERNI---NAWKLKLNMELLLIIITAIFGSVIR 237 (280)
Q Consensus 163 l~aa~~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~t~~~ 237 (280)
+.++++|+.|++++|+..++.+++ .....++...+.+.........+++. .++...+...|..++|+++++|+++
T Consensus 149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~ 228 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVG 228 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986654422 23344555555554444443333321 1122223346889999999999999
Q ss_pred HHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 238 STVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 238 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
|.+|++++|+.++++++.+.++||+++.+++++++||++++.
T Consensus 229 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~ 270 (299)
T PRK11453 229 YGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL 270 (299)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 999999999999999999999999999999999999999874
No 4
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=4.8e-30 Score=225.63 Aligned_cols=251 Identities=13% Similarity=0.043 Sum_probs=195.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHH
Q 041987 7 QMEEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFL 86 (280)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (280)
+..++.+++.++++++++|+.++.++|.+.++ .||.++.++|+.++.++++++... ++ ++.++|++......
T Consensus 6 ~~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~---~~----~~~~~~~~~~~~~~ 77 (293)
T PRK10532 6 RKLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP---WR----LRFAKEQRLPLLFY 77 (293)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH---Hh----ccCCHHHHHHHHHH
Confidence 34567889999999999999999999999987 999999999999999998876422 11 12345666777777
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc--------ceeeeCCCCCCCCCCCchhHHH
Q 041987 87 GLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK--------LEAKINPPLLIFYSTPDRWVLG 158 (280)
Q Consensus 87 gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~--------g~~ii~~~~~~~~~~~~~~~~G 158 (280)
|++. ...+.++++|++|++++.++++.++.|+++++++. ||+++. |+.++.... .+.++.+..|
T Consensus 78 g~~~-~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~~~i~~~Gv~li~~~~---~~~~~~~~~G 149 (293)
T PRK10532 78 GVSL-GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVWVVLAVLGLWFLLPLG---QDVSHVDLTG 149 (293)
T ss_pred HHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHheeeecC---CCcccCChHH
Confidence 8765 46778899999999999999999999999988763 454444 222222111 1122334679
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 041987 159 STLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRS 238 (280)
Q Consensus 159 ~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 238 (280)
+++.++++++||.|.+..|+..++.+ +... .++..++++.+.+.....+. .... +...+...+++|+++|+++|
T Consensus 150 ~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~---~~~~-~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 150 AALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG---EALW-HWSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC---cccC-CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877765 6555 46667777777776654332 1111 22235566799999999999
Q ss_pred HHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 239 TVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 239 ~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
.+|++++|+.+++++|++.++||+++.++|++++||+++..
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~ 264 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI 264 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH
Confidence 99999999999999999999999999999999999999864
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=2.9e-30 Score=227.25 Aligned_cols=250 Identities=10% Similarity=0.003 Sum_probs=183.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 041987 11 EMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTG 90 (280)
Q Consensus 11 ~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g 90 (280)
+.++++.++.+.++||++++.+|.+.++ ++|..+.++|+.++.++++++. ++++. ++.+++ ....+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~----~~~~~--~~~~~~----~~~~~~l~ 70 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV----GFPRL--RQFPKR----YLLAGGLL 70 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc----ccccc--ccccHH----HHHHHhHH
Confidence 4678889999999999999999999987 9999999999999999988763 22111 222322 23344445
Q ss_pred HHHHHHHHHHHhhc----cchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-------eeeCCCCCCCC-----CC
Q 041987 91 VAISQNLAFFGLYY----SSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-------AKINPPLLIFY-----ST 151 (280)
Q Consensus 91 ~~~~~~~~~~~l~~----~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-------~ii~~~~~~~~-----~~ 151 (280)
...+..+++.|++| +++++++++.+++|+++.+++++++|||++++ |+ .++.....+.. ++
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 150 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINN 150 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhc
Confidence 55677777878764 57888999999999999999999999999988 22 23322111000 01
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHH
Q 041987 152 PDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAI 231 (280)
Q Consensus 152 ~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 231 (280)
..+...|+.+++.|+++||.|+++.||..++.+ +.... ...+++.+.+.....+.+ ..+ .+...|..+++.++
T Consensus 151 ~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~l~~~~~ 223 (295)
T PRK11689 151 IASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALWIKYFLSPQP--AMV-FSLPAIIKLLLAAA 223 (295)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHHHHHHHhcCc--ccc-CCHHHHHHHHHHHH
Confidence 122356999999999999999999999877765 64432 223333333333332211 111 22345777778885
Q ss_pred HHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 232 FGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 232 ~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+++++|.+|++++|+.++++++.+.++||+++.+++++++||++|+.
T Consensus 224 -~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~ 270 (295)
T PRK11689 224 -AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS 270 (295)
T ss_pred -HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH
Confidence 88999999999999999999999999999999999999999999864
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=2.6e-29 Score=217.04 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041987 25 TIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNLAFFGLYY 104 (280)
Q Consensus 25 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~ 104 (280)
||.++++.|.+++++.||.+..+.|++.+.+++.+... .| + +++++.+....|.++..+++.++++|++|
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~---~~--~-----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLR---RR--P-----PLKRLLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH---hc--c-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999987799999999999999998877642 22 1 23345667788888878899999999999
Q ss_pred cchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce--eeeCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041987 105 SSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE--AKINPPLLIFYSTPDRWVLGSTLLAASSLSVCVWNIIQVGT 179 (280)
Q Consensus 105 ~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~--~ii~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~ 179 (280)
+++++++++.++.|+++++++.+++|||++++ |+ ++++.......++.+.+..|+.+.++++++|+.+.+..|+.
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~ 150 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRL 150 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999988 33 11110000001123345689999999999999999999998
Q ss_pred hhcCCCch--HHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceecccc
Q 041987 180 IKQYPQVM--KVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFK 257 (280)
Q Consensus 180 ~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~ 257 (280)
.++.+ +. ....+++.++.+.+.+.....+++ ... +...+..+++.++++++++|.+|++++|+.++++++.+.
T Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~ 225 (260)
T TIGR00950 151 VKKEG-PELLQFTGWVLLLGALLLLPFAWFLGPN---PQA-LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA 225 (260)
T ss_pred hhcCC-chHHHHHHHHHHHHHHHHHHHHHhcCCC---CCc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 87764 33 444467888888888877654432 111 334677788999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCccccC
Q 041987 258 PFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 258 ~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+++|+++.+++++++||+++..
T Consensus 226 ~~~pv~~~ll~~~~~~E~~~~~ 247 (260)
T TIGR00950 226 LAEPLVALLLGLLILGETLSLP 247 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999999999864
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.97 E-value=5.4e-29 Score=219.22 Aligned_cols=255 Identities=7% Similarity=-0.035 Sum_probs=181.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC-CCCHHHHHHHHH
Q 041987 7 QMEEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQP-LFTLPLMLRFFF 85 (280)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 85 (280)
+|+++.|+++++++++++||.+++.+|.. ++ ++|.++.++|+.++.+++.++...+ ++.+.... +.+++++.. ..
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~ 77 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSIC-RQWSYLKTLIQTPQKIFM-LA 77 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHcCHHHHHH-HH
Confidence 46678899999999999999999999986 54 9999999999999999887776543 22111000 113444333 33
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-------eeeCCCCCCCCCCCchh
Q 041987 86 LGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-------AKINPPLLIFYSTPDRW 155 (280)
Q Consensus 86 ~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-------~ii~~~~~~~~~~~~~~ 155 (280)
.+.++...++.++++|++|+++++++++.++.|+++++++++++|||++++ |+ .++... .++.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~------~~~~- 150 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT------FGSL- 150 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH------cCCc-
Confidence 566666688999999999999999999999999999999999999999998 32 222111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHH
Q 041987 156 VLGSTLLAASSLSVCVWNIIQVGTIKQYP-QVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGS 234 (280)
Q Consensus 156 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 234 (280)
..+.++++++||.|.+..|+..++.. +....+.+++..+.....+. .+.+...+...+...+..+++.|+ .+
T Consensus 151 ---~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-~t 223 (296)
T PRK15430 151 ---PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQNPMSLNLLLIAAGI-VT 223 (296)
T ss_pred ---cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCCcHHHHHHHHHHHH-HH
Confidence 14688899999999999988653321 12233444444444332221 111111111111112333444555 68
Q ss_pred HHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 235 VIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
.++|.+|++++|+.|++++|++.++||+++.++|++++||++++.
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~ 268 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD 268 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 899999999999999999999999999999999999999999874
No 8
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=1.1e-26 Score=200.48 Aligned_cols=239 Identities=10% Similarity=-0.020 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCC----CCCCCCCHH-HHHHHHHHH
Q 041987 13 VPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGS----EAQPLFTLP-LMLRFFFLG 87 (280)
Q Consensus 13 ~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~g 87 (280)
|++..+++++++||.+++++|. .++ +||.+++++|++++++++.++...+ +|++ +. ++.+++ .+......|
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLF-RQWAALIERL-KRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHH-hCcccchHHHHHHHHH
Confidence 5889999999999999999998 454 9999999999999998887765443 3211 10 111222 244466666
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-------eeeCCCCCCCCCCCchhHH
Q 041987 88 LTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-------AKINPPLLIFYSTPDRWVL 157 (280)
Q Consensus 88 l~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-------~ii~~~~~~~~~~~~~~~~ 157 (280)
.+. ..++.++++|++|+++++++++.++.|+++++++++++|||++++ ++ .++... .++..
T Consensus 78 ~~~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~------~~~~~-- 148 (256)
T TIGR00688 78 LLI-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL------KGSLP-- 148 (256)
T ss_pred HHH-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH------cCCch--
Confidence 664 488999999999999999999999999999999999999999998 22 221111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHH
Q 041987 158 GSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIR 237 (280)
Q Consensus 158 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 237 (280)
.+.++++++||.|.+..|+..++ + ........ ........+... .++.......++..+|..+++.|++ +.++
T Consensus 149 --~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~ 221 (256)
T TIGR00688 149 --WEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLL-QTDFATVQQTNPFPIWLLLVLAGLI-TGTP 221 (256)
T ss_pred --HHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHH-HhccCcccccCchhHHHHHHHHHHH-HHHH
Confidence 36789999999999999987543 2 22222111 111111111111 1111111111222367888888886 8899
Q ss_pred HHHHHhhhhccCcceeccccchHHHHHHHHHHHH
Q 041987 238 STVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTF 271 (280)
Q Consensus 238 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~ 271 (280)
|.+|++++|+.|+++++++.|+||+++.++|++.
T Consensus 222 ~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 222 LLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999764
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.93 E-value=1.2e-24 Score=192.21 Aligned_cols=255 Identities=12% Similarity=-0.006 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041987 18 MVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNL 97 (280)
Q Consensus 18 ~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~ 97 (280)
.++..++=....+.-|.++++-..|..+.+.|+..+.+.+.+... . +.+++ ++.+++++.+....|+++ ..+..+
T Consensus 7 ~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~~ 81 (302)
T TIGR00817 7 FGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-S-GLPKR--LKISSALLKLLLPVAIVH-TIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-h-CCCCC--CCCCHHHHHHHHHHHHHH-HHHHHH
Confidence 334444434445678999986578999999999999887765521 1 22223 456788899999999997 578899
Q ss_pred HHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ceee--eCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 041987 98 AFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LEAK--INPPLLIFYSTPDRWVLGSTLLAASSLSVCVW 172 (280)
Q Consensus 98 ~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~~i--i~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~ 172 (280)
.+.|++|++++.++++.++.|+++++++.+++|||++++ |+.+ .+.... ..++.+....|+++.++|+++|+.+
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~-~~~~~~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA-SDTELSFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh-cCCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 3311 111000 0112233467999999999999999
Q ss_pred HHHHHhhhh--cCCCchHHHHHHHHHHHHHHHHHHHhhcccc-c--cccc-----chhhHHHHHHHHHHHHHHHHHHHHH
Q 041987 173 NIIQVGTIK--QYPQVMKVVSFYSLAGTIQCSIFSLIMERNI-N--AWKL-----KLNMELLLIIITAIFGSVIRSTVHV 242 (280)
Q Consensus 173 ~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--~~~~-----~~~~~~~~~~~~g~~~t~~~~~~~~ 242 (280)
.+..||..+ +++ +.+.+.+++..+++.+.|.....|... . ++.. .....+...+..+..+....+.+++
T Consensus 161 ~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (302)
T TIGR00817 161 NIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAF 239 (302)
T ss_pred HHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 665 889999999999999999887655311 0 1100 0001111122222222222334566
Q ss_pred hhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 243 SCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 243 ~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+++++.||++.++..+++|++++++|++++||++|+.
T Consensus 240 ~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~ 276 (302)
T TIGR00817 240 MLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ 276 (302)
T ss_pred HHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh
Confidence 8999999999999999999999999999999999875
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.93 E-value=2.1e-24 Score=188.73 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041987 15 FTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAIS 94 (280)
Q Consensus 15 ~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~ 94 (280)
.+..++++++|+...+..|...++ -++ ..++++..+.+++.|+...+ .++... ++.+++ ++.....+.++...+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWY-LAQVGW-SRLPAT-FWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHh-cccCCC-CCcchh-hHHHHHHHHHHHHHH
Confidence 456788999999999999966554 344 35888888888888876543 222221 222333 444444555555688
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-------eeeCCCCCCCCCCCchhHHHHHHHHH
Q 041987 95 QNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-------AKINPPLLIFYSTPDRWVLGSTLLAA 164 (280)
Q Consensus 95 ~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-------~ii~~~~~~~~~~~~~~~~G~~~~l~ 164 (280)
+.++++|+++++++.++.+.++.|+++++++++++|||++++ |+ .++... +....+..|+.+.++
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~-----~~~~~~~~g~~~~l~ 151 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS-----RFAQHRRKAYAWALA 151 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----cccccchhHHHHHHH
Confidence 999999999999999999999999999999999999999988 43 122111 111223468889999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCchH----HHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 041987 165 SSLSVCVWNIIQVGTIKQYPQVMK----VVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRSTV 240 (280)
Q Consensus 165 aa~~~a~~~v~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 240 (280)
++++|+.|.+..|+..++.+ +.. .+.+++..+++...+.....+.. .+. .++..+...++.+.+++.++|.+
T Consensus 152 aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l~~~l 227 (281)
T TIGR03340 152 AALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSATLGGLMIGGAYAL 227 (281)
T ss_pred HHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887655443 322 22233333222222221111111 111 12234556678888899999999
Q ss_pred HHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 241 HVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 241 ~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
|++++|+.|+++++.+.+++|+++.++|++++||+++..
T Consensus 228 ~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~ 266 (281)
T TIGR03340 228 VLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT 266 (281)
T ss_pred HHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH
Confidence 999999999999999999999999999999999999864
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.91 E-value=2.9e-22 Score=180.10 Aligned_cols=262 Identities=16% Similarity=0.097 Sum_probs=191.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC--CHHHHHHHHHHH
Q 041987 11 EMVPFTLMVIMEGCTIGLTIVTKTAMNGGMS-PFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLF--TLPLMLRFFFLG 87 (280)
Q Consensus 11 ~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g 87 (280)
+.|.....+....+=.......|.++++ .+ |+.+..+|++++++++...... +.+++ ++. +++++.++...|
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~--~~~~~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT--GFRKI--PRIKSLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh--CCCCC--CCCCCHHHHHHHHHHHH
Confidence 4555666666666656667889999987 99 9999999999998876554332 22222 333 345678888999
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ceeee-CCCCCCCCCCCchhHHHHHHHH
Q 041987 88 LTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LEAKI-NPPLLIFYSTPDRWVLGSTLLA 163 (280)
Q Consensus 88 l~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~~ii-~~~~~~~~~~~~~~~~G~~~~l 163 (280)
+++... ....+.|+++++++.+.++-++.|+++++++++++|||++++ ++.++ .+.......+.+.+..|+++++
T Consensus 122 l~~~~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l 200 (350)
T PTZ00343 122 LCHLFV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAM 200 (350)
T ss_pred HHHHHH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHH
Confidence 988754 455679999999999999999999999999999999999998 33111 1110000122233467999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCC------CchHHHHHHHHHHHHHHHHHHHhhcccc--cccc----cchhhHHHHHHHHHH
Q 041987 164 ASSLSVCVWNIIQVGTIKQYP------QVMKVVSFYSLAGTIQCSIFSLIMERNI--NAWK----LKLNMELLLIIITAI 231 (280)
Q Consensus 164 ~aa~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~g~ 231 (280)
+|+++|+.++++.|+..++.+ ++.....++...+++.++|+....|... ..+. ......+..+++ .+
T Consensus 201 ~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i 279 (350)
T PTZ00343 201 LSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KI 279 (350)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HH
Confidence 999999999999999876532 1444555668899999999887555321 0110 001111233444 35
Q ss_pred HHHHHHHHHHHh----hhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 232 FGSVIRSTVHVS----CAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 232 ~~t~~~~~~~~~----a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+.+++.|++|+. ++++.+|...++..+++|++++++|++++||++|+.
T Consensus 280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~ 331 (350)
T PTZ00343 280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL 331 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH
Confidence 678999999995 999999999999999999999999999999999874
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=6.1e-21 Score=166.54 Aligned_cols=255 Identities=16% Similarity=0.145 Sum_probs=186.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 041987 9 EEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGL 88 (280)
Q Consensus 9 ~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 88 (280)
++........++..+.|+.+....|...++..++....+.|+..+.+...+.... ++..+ . ...+++.+....+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~~~~~ 77 (292)
T COG0697 3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGL--R-PALRPWLLLLLLAL 77 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hcccc--c-ccccchHHHHHHHH
Confidence 3455677888888899999999999998764677777777999999885444322 11111 1 11111345566666
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHH-HhhccccCCc---ce-------eeeCCCCCCCCCCCch-hH
Q 041987 89 TGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSI-ITRKAASDDK---LE-------AKINPPLLIFYSTPDR-WV 156 (280)
Q Consensus 89 ~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~-i~~~ek~~~~---g~-------~ii~~~~~~~~~~~~~-~~ 156 (280)
++...++.+++.++++++++.++.+.++.|+++.+++. +++|||++++ ++ .++.... ...+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~----~~~~~~~~ 153 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGG----GGGGILSL 153 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCC----CcchhHHH
Confidence 66778999999999999999999999999999999997 6779999998 32 2222211 11111 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHH-HHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHH
Q 041987 157 LGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVS-FYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSV 235 (280)
Q Consensus 157 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 235 (280)
.|+.+.+.++++|+.+.+..|+.. +.+ +..... +++..... .......... . .......+....+.|+++++
T Consensus 154 ~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 154 LGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALL--LLLLFFLSGF--G-APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHH--HHHHHHhccc--c-ccCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999887 544 545554 44441122 2211111111 1 11233457788899999999
Q ss_pred HHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 236 IRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+++.+|++++++.++++++.+.+++|+++.+++++++||+++..
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~ 270 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA 270 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 99999999999999999999999999999999999999999864
No 13
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.83 E-value=8.6e-19 Score=144.62 Aligned_cols=247 Identities=13% Similarity=0.016 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 041987 14 PFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAI 93 (280)
Q Consensus 14 ~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~ 93 (280)
++..+..++..-=....+.|...+. ++|.-.+.+|..++.+++.++.. .-+ .+.+++++..+...|..-. .
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~R-----Pwr--~r~~~~~~~~~~~yGvsLg-~ 83 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFR-----PWR--RRLSKPQRLALLAYGVSLG-G 83 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhh-----HHH--hccChhhhHHHHHHHHHHH-H
Confidence 5777888877777778889999988 99999999999999999988742 112 3456677888888886654 4
Q ss_pred HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc-------ceeeeCCCCCCCCCCCchhHHHHHHHHHHH
Q 041987 94 SQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK-------LEAKINPPLLIFYSTPDRWVLGSTLLAASS 166 (280)
Q Consensus 94 ~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~-------g~~ii~~~~~~~~~~~~~~~~G~~~~l~aa 166 (280)
.+.+||.+++.++.+.+..+.++-|+.++.+. .|+..+.. |+.++... .++..+.+..|..+++.++
T Consensus 84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~---sRr~~d~vwvaLAvlGi~lL~p~---~~~~~~lDp~Gv~~Al~AG 157 (292)
T COG5006 84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS---SRRLRDFVWVALAVLGIWLLLPL---GQSVWSLDPVGVALALGAG 157 (292)
T ss_pred HHHHHHHHHHhccchhhhhhhhccHHHHHHHh---ccchhhHHHHHHHHHHHHhheec---cCCcCcCCHHHHHHHHHHh
Confidence 56889999999999999999999999877753 23333322 33232222 2345666789999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041987 167 LSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRSTVHVSCAE 246 (280)
Q Consensus 167 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~ 246 (280)
.||+.|++..||..+..+ ...-+...+.+++++.+|+..-...+ ...++.-...-+..+++++++.|.+=..+++
T Consensus 158 ~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag~----~l~~p~ll~laLgvavlSSalPYsLEmiAL~ 232 (292)
T COG5006 158 ACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAGP----ALFSPSLLPLALGVAVLSSALPYSLEMIALR 232 (292)
T ss_pred HHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcch----hhcChHHHHHHHHHHHHhcccchHHHHHHHh
Confidence 999999999999875544 66788899999999999998743221 1112223455668899999999999999999
Q ss_pred ccCcceeccccchHHHHHHHHHHHHhcCccccCC
Q 041987 247 MKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYGR 280 (280)
Q Consensus 247 ~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~~ 280 (280)
|.+...-+++..+||.++.+.|++++||++|+.|
T Consensus 233 rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q 266 (292)
T COG5006 233 RLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ 266 (292)
T ss_pred hCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999999999753
No 14
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.82 E-value=3.8e-18 Score=149.70 Aligned_cols=245 Identities=13% Similarity=0.066 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 041987 14 PFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAI 93 (280)
Q Consensus 14 ~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~ 93 (280)
+++..++++++||++.+..|... |.++.++. |..++.+++..+.... +++ ++.+++.+..-.+.|.+ -..
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~~----~~~~~~~~~~g~l~G~~-w~i 71 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VLP----EFWALSIFLVGLLSGAF-WAL 71 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hCC----cccccHHHHHHHHHHHH-HHh
Confidence 46788999999999999999864 58888876 8888888887766554 321 11223333333333333 457
Q ss_pred HHHHHHHHhhccchhHHHHhhh-hhHHHHHHHHHHhhccccCCc-------ce-------eeeCCCCCCCCCCC--chhH
Q 041987 94 SQNLAFFGLYYSSPIVVCVMGL-LIPAISFLLSIITRKAASDDK-------LE-------AKINPPLLIFYSTP--DRWV 156 (280)
Q Consensus 94 ~~~~~~~~l~~~~~~~a~vi~~-~~P~~~~il~~i~~~ek~~~~-------g~-------~ii~~~~~~~~~~~--~~~~ 156 (280)
.+.+++.+.++++.+.+-.+.+ ++|++..+.+.+++|||.+++ |+ .++.....+..+++ .+..
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~ 151 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFK 151 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchh
Confidence 7899999999999999988887 888899999999999999887 22 11111111111101 2336
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHH---HHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHH
Q 041987 157 LGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKV---VSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFG 233 (280)
Q Consensus 157 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 233 (280)
.|.++.++++++|+.|.+..|+. +++ |.+. ..+.++.+++...+... ..+ ++ .+...+..++ .|++
T Consensus 152 ~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~~-~~~---~~--~~~~~~~~~~-~Gi~- 220 (290)
T TIGR00776 152 KGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGHI-LAK---PL--KKYAILLNIL-PGLM- 220 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHHh-ccc---ch--HHHHHHHHHH-HHHH-
Confidence 89999999999999999999975 355 7776 44444445544433221 001 11 2222344444 8887
Q ss_pred HHHHHHHHHhhhh-ccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 234 SVIRSTVHVSCAE-MKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 234 t~~~~~~~~~a~~-~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+.+++.+|..+.+ +.+++.++.+.+.||+.+.+++++++||+.+..
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~ 267 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR 267 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 7999999999999 999999999999999999999999999998754
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.80 E-value=4e-17 Score=144.13 Aligned_cols=253 Identities=17% Similarity=0.158 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041987 18 MVIMEGCTIGLTIVTKTAMNGG--MSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQ 95 (280)
Q Consensus 18 ~~~~~~~wg~~~~~~k~~~~~~--~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~ 95 (280)
.+++- +=..+.+.+....+.| .|..+......+++ ++..++...+ +++++. .+.-+++|+++.+.|++.. ..+
T Consensus 19 Q~lsl-~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~-~vy~~~~~~r-~~~~~~-~~~~~~~~w~y~lla~~Dv-~aN 93 (334)
T PF06027_consen 19 QVLSL-CITGTGTFSSLLANKGVNIPTFQSFFNYVLLA-LVYTPILLYR-RGFKKW-LKVLKRPWWKYFLLALLDV-EAN 93 (334)
T ss_pred HHHHH-HHHhHHHHHHHHHhcCccCcHHHHHHHHHHHH-HHHhhhhhhc-cccccc-hhhcchhHHHHHHHHHHHH-HHH
Confidence 33443 4455555555554445 44455544444444 3444554443 222221 2334566888899999996 778
Q ss_pred HHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-------eeeCCC--C-CCCCCCCchhHHHHHHH
Q 041987 96 NLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-------AKINPP--L-LIFYSTPDRWVLGSTLL 162 (280)
Q Consensus 96 ~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-------~ii~~~--~-~~~~~~~~~~~~G~~~~ 162 (280)
++...|++||+.+.+.++-.+.-.++++++++++|||.++. |+ .++... . ++..+++++...||+++
T Consensus 94 ~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~ 173 (334)
T PF06027_consen 94 YLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA 173 (334)
T ss_pred HHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH
Confidence 99999999999999999999999999999999999999988 33 222211 1 11123456778999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 041987 163 AASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERN-INAWKLKLNMELLLIIITAIFGSVIRSTVH 241 (280)
Q Consensus 163 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~ 241 (280)
++++..||+++|+.++..++.+ ..+.....-++|.++..+.....|.. ....++.+ ..+...+ ...++...-|.+.
T Consensus 174 l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~-~~~~~~v-~~~~~lf~~y~l~ 250 (334)
T PF06027_consen 174 LLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTS-QVIGLLV-GYALCLFLFYSLV 250 (334)
T ss_pred HHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCCh-hhHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999886 77778888888998888777666653 22222222 1233322 2334667788888
Q ss_pred HhhhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 242 VSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 242 ~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
...++..+|+...+-..+..+++.+++++++||+++|
T Consensus 251 p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ 287 (334)
T PF06027_consen 251 PIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSW 287 (334)
T ss_pred HHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccH
Confidence 9999999999999999999999999999999999986
No 16
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=134.40 Aligned_cols=257 Identities=11% Similarity=0.049 Sum_probs=186.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCC-CCCCCHHHHHHHHHHH
Q 041987 9 EEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEA-QPLFTLPLMLRFFFLG 87 (280)
Q Consensus 9 ~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 87 (280)
++..||++..+.+.+.||..+...|.. +. .++.++...|.+-+.+.+..+.... ++.+.. .-..++|.+..+...+
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~-r~~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLL-RQWRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCcHHHHHHHHHH
Confidence 345689999999999999999999987 44 9999999999999999888776654 332111 0123445566666666
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc-ce----eeeCCCCCCCCCCCchhHHHHHHH
Q 041987 88 LTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK-LE----AKINPPLLIFYSTPDRWVLGSTLL 162 (280)
Q Consensus 88 l~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~-g~----~ii~~~~~~~~~~~~~~~~G~~~~ 162 (280)
++- ..+...|.+|.++-.+-++|.=++.+|++..+++.+++|||+++. -+ +.++... ..-..++.+ ...
T Consensus 80 ~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~-~~~~~g~lp----wva 153 (293)
T COG2962 80 LLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI-QTWLLGSLP----WVA 153 (293)
T ss_pred HHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHHcCCCc----HHH
Confidence 553 589999999999999999999999999999999999999999988 11 2221110 001112222 245
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 041987 163 AASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRSTVHV 242 (280)
Q Consensus 163 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~ 242 (280)
+.=+++|+.|-...|+. +.+ +.+-....++.-....+...+..+..........+..+..++..|. .|+++..+|.
T Consensus 154 l~la~sf~~Ygl~RK~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~ 229 (293)
T COG2962 154 LALALSFGLYGLLRKKL--KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHHhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHH
Confidence 66678999999976654 233 5455555555555555555444443211011123345667777888 7789999999
Q ss_pred hhhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 243 SCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 243 ~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
.+-|+++-+..+.++|.+|..-.++|++++||+++.
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~ 265 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDS 265 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999975
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.72 E-value=2.2e-18 Score=143.24 Aligned_cols=253 Identities=16% Similarity=0.138 Sum_probs=184.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHH
Q 041987 12 MVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGV 91 (280)
Q Consensus 12 ~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~ 91 (280)
.++.....++ ..+.+..+..+..++ .+|.+....|++.-.++..|..+.. +.... .+...|. ++.++|+.|.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~-~~~v~--gp~g~R~--~LiLRg~mG~ 108 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYY-MQPVI--GPEGKRK--WLILRGFMGF 108 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEE-eeeee--cCCCcEE--EEEeehhhhh
Confidence 3455555555 566666666666554 6899999999888888887766554 33322 2223333 3566788885
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc----------ceeee-CCC-------CCCCCCCCc
Q 041987 92 AISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK----------LEAKI-NPP-------LLIFYSTPD 153 (280)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~----------g~~ii-~~~-------~~~~~~~~~ 153 (280)
....+.|||++|.+.++|+++..+.|.+|.++++.++|||.++. |+.+| .+. ++.+.++.+
T Consensus 109 -tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~ 187 (346)
T KOG4510|consen 109 -TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVE 187 (346)
T ss_pred -hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccc
Confidence 67778899999999999999999999999999999999999988 44333 221 111112224
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccc-hhhHHHHHHHHHHH
Q 041987 154 RWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLK-LNMELLLIIITAIF 232 (280)
Q Consensus 154 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 232 (280)
.+..|.+.++.+++.-|.-.++.|++-|+.+ ......+..+++.+..+......+ .++.+ ...+++.++.+|++
T Consensus 188 ~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGvf 262 (346)
T KOG4510|consen 188 YDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGVF 262 (346)
T ss_pred ccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehhh
Confidence 4567888899999888888888898877765 555555666666666554443222 33333 33467777888995
Q ss_pred HHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 233 GSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 233 ~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+ ++++.+...++|+-.+..+++..+.+.++|.++.++++||.+|+-
T Consensus 263 g-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w 308 (346)
T KOG4510|consen 263 G-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW 308 (346)
T ss_pred h-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH
Confidence 5 799999999999999999999999999999999999999999864
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.48 E-value=3.4e-11 Score=106.44 Aligned_cols=231 Identities=13% Similarity=0.074 Sum_probs=168.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHH
Q 041987 41 SPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAI 120 (280)
Q Consensus 41 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~ 120 (280)
.|..+++..+....+.-.+..... ++++. ++.+ +.++...+.+.. ....+.+.|++|+|...-.+.=...|+.
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~-~~~~~--~~~~---~~~~~~~~~~~~-~~~~~~~~al~~i~~p~~~~~ks~~~i~ 103 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLF-KFPKS--RKIP---LKKYAILSFLFF-LASVLSNAALKYISYPTQIVFKSSKPIP 103 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhc-cccCC--CcCh---HHHHHHHHHHHH-HHHHHHHHHHHhCChHHHHHHhhhHHHH
Confidence 388999999999888777765544 31222 3334 455566676654 7788999999999999888888999999
Q ss_pred HHHHHHHhhccccCCc----------ceeeeCCCCC----CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-C
Q 041987 121 SFLLSIITRKAASDDK----------LEAKINPPLL----IFYSTPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYP-Q 185 (280)
Q Consensus 121 ~~il~~i~~~ek~~~~----------g~~ii~~~~~----~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~ 185 (280)
+++++.+++|||.+.+ |+++....+. +......+...|+.+.+++.++.+...+.+++..++++ +
T Consensus 104 vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~ 183 (303)
T PF08449_consen 104 VMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKS 183 (303)
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999988 2222221111 11111122234999999999999999999999987754 4
Q ss_pred chHHHHHHHHHHHHHHHHHHHh--hccccccccc--chhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHH
Q 041987 186 VMKVVSFYSLAGTIQCSIFSLI--MERNINAWKL--KLNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGI 261 (280)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~p 261 (280)
+.+.+.+...++.+...+.... .++....+.. ..+..+..++...+ ...++....++..++.||...++...+.-
T Consensus 184 ~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk 262 (303)
T PF08449_consen 184 PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRK 262 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHH
Confidence 6788899999988888777765 2221111111 12223445454544 55677778888999999999999999999
Q ss_pred HHHHHHHHHHhcCccccC
Q 041987 262 VFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 262 v~a~~l~~~~l~E~it~~ 279 (280)
.++.+++++++||++++.
T Consensus 263 ~~sillS~~~f~~~~~~~ 280 (303)
T PF08449_consen 263 FLSILLSVIIFGHPLSPL 280 (303)
T ss_pred HHHHHHHHHhcCCcCChH
Confidence 999999999999999875
No 19
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.38 E-value=1.9e-12 Score=98.71 Aligned_cols=109 Identities=21% Similarity=0.296 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041987 23 GCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNLAFFGL 102 (280)
Q Consensus 23 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l 102 (280)
++||...++.|...++ .||.+..++|+..+.+ ++++.... +++.. ++.+++++......|.++....+.++++|+
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL-GRKPF--KNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh-ccccc--cCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 4799999999999987 9999999999999998 66655554 44332 456677788888888887678999999999
Q ss_pred hccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 103 YYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 103 ~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
++++++.++.+.++.|+++.+++++++|||++++
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~ 109 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWR 109 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999877
No 20
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.33 E-value=9.5e-12 Score=92.71 Aligned_cols=120 Identities=17% Similarity=0.074 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 041987 13 VPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVA 92 (280)
Q Consensus 13 ~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~ 92 (280)
....+.++++++||...++.|...|+ +||....+.|..+...++..+.... ++.+. +...+.|.|..+...|+.+ .
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~-g~~~~-~~~~~~k~~lflilSGla~-g 78 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVT-GNWQA-GGEIGPKSWLFLILSGLAG-G 78 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhc-Cceec-ccccCcceehhhhHHHHHH-H
Confidence 45788999999999999999999986 9999999999999999998888776 44322 1235778889899889776 4
Q ss_pred HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 93 ISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 93 ~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+...+||.+++..+++...-+-.+.|.++++++++++|||++.+
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~ 122 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP 122 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999999999999999999999999987
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.33 E-value=3.3e-11 Score=105.28 Aligned_cols=187 Identities=12% Similarity=0.081 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc----------ceeeeCCC--CCCCCCCCchhHHHH
Q 041987 92 AISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK----------LEAKINPP--LLIFYSTPDRWVLGS 159 (280)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~----------g~~ii~~~--~~~~~~~~~~~~~G~ 159 (280)
+..++.+..|+.+|+++...++-.+.-+||..++.++..||.++. |+.++... ..++...+.+...|+
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~ 249 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGN 249 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHH
Confidence 457788999999999999999999999999999999999999987 33222221 112223456678999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCchHHH-H--HHHHHHHHHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHH
Q 041987 160 TLLAASSLSVCVWNIIQVGTIKQYPQVMKVV-S--FYSLAGTIQCSIFSLIMER-NINAWKLKLNMELLLIIITAIFGSV 235 (280)
Q Consensus 160 ~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~t~ 235 (280)
++++++|+.||.|+++.||-.++.+.-..+. + +.-++..+++.|..++... ....+..+.......+++.+.++|+
T Consensus 250 llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtv 329 (416)
T KOG2765|consen 250 LLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTV 329 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHH
Confidence 9999999999999999988766653121111 1 1222333333333332111 1123444444456677888899999
Q ss_pred HHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 236 IRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
++=++|.+|+-..+|..+.+-+.++.+.|++.+.++=+.++|+
T Consensus 330 vSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~ 372 (416)
T KOG2765|consen 330 VSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSA 372 (416)
T ss_pred HHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999888888775
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.21 E-value=2.2e-10 Score=85.51 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccc---hhhHHHHHHHHHHHHH
Q 041987 158 GSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLK---LNMELLLIIITAIFGS 234 (280)
Q Consensus 158 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~t 234 (280)
-.++++++|+.++...+..|--.++.+ |...+.....+..+.+..+....++ ++.. +.+.|..++..|+ .+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~----~~~~~~~~~k~~lflilSGl-a~ 77 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGN----WQAGGEIGPKSWLFLILSGL-AG 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCc----eecccccCcceehhhhHHHH-HH
Confidence 357899999999999999998888876 8888989988888887777665543 3333 5567888888886 88
Q ss_pred HHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 235 VIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+.+..+|+++++...++++.++.-+.|++++++++++++|++|..
T Consensus 78 glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~ 122 (140)
T COG2510 78 GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP 122 (140)
T ss_pred HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999999999999999999999999864
No 23
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.21 E-value=1.9e-11 Score=93.06 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041987 167 LSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRSTVHVSCAE 246 (280)
Q Consensus 167 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~ 246 (280)
++||.+.+..|+..++.+ +...+.+++..+++ ..+.....+... ....+.+.+...++.+.+++++++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 478999999999999886 99999999999998 666665544321 22233345777788889889999999999999
Q ss_pred ccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 247 MKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 247 ~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+.++++++.+.+++|+++.++++++++|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~ 109 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR 109 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999864
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.18 E-value=1.3e-09 Score=95.58 Aligned_cols=245 Identities=14% Similarity=0.101 Sum_probs=174.3
Q ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 041987 30 IVTKTAMN--GGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNLAFFGLYYSSP 107 (280)
Q Consensus 30 ~~~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~ 107 (280)
...|..++ +.--|..+...+...+.+.......++ .++.. +..++..+...+-+|++.. +.-.+-+.+++|.++
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~~~--~~~~~~~~~~llpl~~~~~-~~~v~~n~Sl~~v~V 109 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVPPS--KISSKLPLRTLLPLGLVFC-ISHVLGNVSLSYVPV 109 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCCC--ccccccchHHHHHHHHHHH-HHHHhcchhhhccch
Confidence 44577766 446799999999999888887765554 33222 2223345667777787764 777888999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-eeeCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh--
Q 041987 108 IVVCVMGLLIPAISFLLSIITRKAASDDK---LE-AKINPPLLIFYSTPDRWVLGSTLLAASSLSVCVWNIIQVGTIK-- 181 (280)
Q Consensus 108 ~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-~ii~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~-- 181 (280)
+....+=++.|.++.++++++.+|+.+.. .+ +++.+......+..+.+..|...++.+.++.+..+++.|++.+
T Consensus 110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~ 189 (316)
T KOG1441|consen 110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSK 189 (316)
T ss_pred hHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999988 22 2333322222344556789999999999999999999999884
Q ss_pred cC-CCchHHHHHHHHHHHHHHH-HHHHhhccccc-c-cccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceecccc
Q 041987 182 QY-PQVMKVVSFYSLAGTIQCS-IFSLIMERNIN-A-WKLKLNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFK 257 (280)
Q Consensus 182 ~~-~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~ 257 (280)
+. -+++....++.-++.+.++ |.....|++.. . ...++.......++.. .....-....+..+.+.+|..-++..
T Consensus 190 ~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g 268 (316)
T KOG1441|consen 190 GESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAG 268 (316)
T ss_pred ccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhc
Confidence 22 1488888888888888888 77665554322 0 0001111222223333 24444556667788999999988888
Q ss_pred chHHHHHHHHHHHHhcCccccC
Q 041987 258 PFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 258 ~l~pv~a~~l~~~~l~E~it~~ 279 (280)
..--++.++.++++++|++|+.
T Consensus 269 ~~K~~~vi~~s~~iF~~pvt~~ 290 (316)
T KOG1441|consen 269 HMKRIVVIVVSWLIFGNPVTFL 290 (316)
T ss_pred cceEEEEEEeEeeeecCCCchh
Confidence 8888888888888888877754
No 25
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.15 E-value=1.4e-09 Score=93.69 Aligned_cols=122 Identities=21% Similarity=0.261 Sum_probs=102.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHH
Q 041987 9 EEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPF--VFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFL 86 (280)
Q Consensus 9 ~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~--~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (280)
.++.++..+.+++.++|+...+..|...++ .+|. ....+|+.++.+++.++.... +++ +..+.+.+......
T Consensus 124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~----~~~~~~~~~~~~~~ 197 (260)
T TIGR00950 124 SINPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFL-GPN----PQALSLQWGALLYL 197 (260)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhc-CCC----CCcchHHHHHHHHH
Confidence 345679999999999999999999999865 6644 555578999999998887654 332 22356677778888
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 87 GLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 87 gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
|.++..+.+.++++++++++++.++.+.++.|++++++++++++||++.+
T Consensus 198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~ 247 (260)
T TIGR00950 198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP 247 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 88887789999999999999999999999999999999999999999876
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.99 E-value=8e-08 Score=82.11 Aligned_cols=201 Identities=14% Similarity=0.067 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-------eeeCCC
Q 041987 75 FTLPLMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-------AKINPP 144 (280)
Q Consensus 75 ~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-------~ii~~~ 144 (280)
.++|+.+++.+-+++- .+.+.+.+.++++.+++.-.++.++-.++|++++.+++|+|.+++ ++ .+....
T Consensus 12 ~~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~ 90 (244)
T PF04142_consen 12 KSPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS 90 (244)
T ss_pred HhHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence 3566778888888886 488999999999999999999999999999999999999999988 22 222211
Q ss_pred --CC--CCCC-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-hHHHHHHHHHHHHHHHHHHHhhccc-
Q 041987 145 --LL--IFYS-------TPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQV-MKVVSFYSLAGTIQCSIFSLIMERN- 211 (280)
Q Consensus 145 --~~--~~~~-------~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~- 211 (280)
.. +..+ .......|.+..++++++-++..|+.+|..|+.+.+ ...+...+..|.++.++.....+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~ 170 (244)
T PF04142_consen 91 SSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSA 170 (244)
T ss_pred CccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 11 0000 123457999999999999999999999999875423 4455556777777766655443221
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 212 INAWKLKLNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
..+...-. ++-...+.-++..+++=.+....+|+.+...=+.......+.+.+.++.++|+++|.
T Consensus 171 ~~~~g~f~--G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 171 ISESGFFH--GYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred cccCCchh--hcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 11111111 111111222333333436667788999998888888999999999999999999986
No 27
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.91 E-value=1.8e-09 Score=81.42 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHH
Q 041987 47 AYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSI 126 (280)
Q Consensus 47 ~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~ 126 (280)
.+|+..+.+.+..+...+ +|.++..+..+++++.+....|.++...++.++++|++|++ +.++.+.+++|+++.+++.
T Consensus 2 a~r~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIR-GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHH-ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 589999999999887775 44212112233445666777788886688999999999999 5888999999999999999
Q ss_pred HhhccccCCc
Q 041987 127 ITRKAASDDK 136 (280)
Q Consensus 127 i~~~ek~~~~ 136 (280)
+++|||++++
T Consensus 80 ~~~~er~~~~ 89 (113)
T PF13536_consen 80 LFFKERLSPR 89 (113)
T ss_pred HHhcCCCCHH
Confidence 9999999988
No 28
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.77 E-value=4.6e-07 Score=79.74 Aligned_cols=135 Identities=12% Similarity=0.106 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHH
Q 041987 12 MVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGV 91 (280)
Q Consensus 12 ~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~ 91 (280)
..+.+..+.++++|+...+..|...++ .+|....... ..+.+++.++.... .. . ...+...+......|+++.
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~-~~--~--~~~~~~~~~~~l~lgv~~t 219 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAE-HGPATVAIGS-LIAALIFVPIGALQ-AG--E--ALWHWSILPLGLAVAILST 219 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHH-HHHHHHHHHHHHHc-cC--c--ccCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999998765 7888876555 55566666765543 22 1 2244555555667888888
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCcceeeeCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 041987 92 AISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDKLEAKINPPLLIFYSTPDRWVLGSTLLAASSLSVCV 171 (280)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~g~~ii~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~ 171 (280)
.+.+.++++++++++++.++.+.++.|++..++++++++|+++.. ...|..+.+.+++....
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------------------~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------------------QWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------------------HHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999999998543 34566666666665543
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.75 E-value=2.6e-07 Score=81.29 Aligned_cols=122 Identities=15% Similarity=0.049 Sum_probs=99.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH
Q 041987 10 EEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLT 89 (280)
Q Consensus 10 ~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 89 (280)
++..+.++.+.++++|+...+..|...+ -++.....+++.++.+++.++.... +.... ...+.+.+......|++
T Consensus 147 ~~~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~i~~l~i~ 221 (292)
T PRK11272 147 GNPWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLS-GERLT--ALPTLSGFLALGYLAVF 221 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHc-CCccc--ccCCHHHHHHHHHHHHH
Confidence 3457999999999999999999998643 2456677889999999888876554 32211 22355678888888988
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 90 GVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 90 g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+..+.+.++++++++.+++.++++.++.|++.+++++++++|+++..
T Consensus 222 ~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~ 268 (292)
T PRK11272 222 GSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI 268 (292)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 87788999999999999999999999999999999999999998654
No 30
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.72 E-value=1e-07 Score=84.08 Aligned_cols=123 Identities=7% Similarity=-0.031 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhccccccc--ccchhhHHHHHHHHH
Q 041987 153 DRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAW--KLKLNMELLLIIITA 230 (280)
Q Consensus 153 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g 230 (280)
++...|..+.++++++|+...+..|.. ++.+ |.+...+++.++.+...++.....+ .... ...+...+.. ...+
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 79 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKIFM-LAVS 79 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHHHH-HHHH
Confidence 355689999999999999999999764 6676 9999999999998877766543221 0010 0111222322 3356
Q ss_pred HHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 231 IFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 231 ~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
.++.+..+.++++++++.+++.+++..++.|++..++++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~ 128 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM 128 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 6677889999999999999999999999999999999999999999864
No 31
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=3.8e-06 Score=72.74 Aligned_cols=260 Identities=13% Similarity=0.114 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHH
Q 041987 14 PFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIA--YTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGV 91 (280)
Q Consensus 14 ~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~--~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~ 91 (280)
+....+.-.+.--.+.+.-|..+...--|..+.. +..+...+.+...-.. |-.+. ++.+++..++..-..++..
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~---~lv~~-~~l~~~~~kk~~P~~~lf~ 88 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL---GLVNF-RPLDLRTAKKWFPVSLLFV 88 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh---ceeec-CCcChHHHHHHccHHHHHH
Confidence 3444444444445566777888765444444444 7887777766555322 21221 4567777777777777764
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ce-eeeCCCCCCCCCCCchhHHHHHHHHHHHH
Q 041987 92 AISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LE-AKINPPLLIFYSTPDRWVLGSTLLAASSL 167 (280)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~-~ii~~~~~~~~~~~~~~~~G~~~~l~aa~ 167 (280)
.+...-..+++|.+...-.++=...|+++++....++|.|++.+ .+ +++.+...........+..|-.|++...+
T Consensus 89 -~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~ 167 (314)
T KOG1444|consen 89 -GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCL 167 (314)
T ss_pred -HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHH
Confidence 67778889999999999999999999999999999999888777 22 22222211112223333458899999999
Q ss_pred HHHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHHHHHHHhhcc-c-c-cccc-cchhhHHHHHHHHHHHHHHHHHHHHH
Q 041987 168 SVCVWNIIQVGTIKQYP-QVMKVVSFYSLAGTIQCSIFSLIMER-N-I-NAWK-LKLNMELLLIIITAIFGSVIRSTVHV 242 (280)
Q Consensus 168 ~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-~-~-~~~~-~~~~~~~~~~~~~g~~~t~~~~~~~~ 242 (280)
+-+.+.+..|+..+..+ +...++.+..+.+.........+.++ + . .+.+ ......+..+...++++-++.|.. .
T Consensus 168 ~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s-~ 246 (314)
T KOG1444|consen 168 TTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTS-F 246 (314)
T ss_pred HHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH-H
Confidence 99999999988765422 25567888888888877776665543 1 0 0110 111223667778888887777655 5
Q ss_pred hhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 243 SCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 243 ~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+..+..+++..++.....-..+.+...++.|+++++.
T Consensus 247 ~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~ 283 (314)
T KOG1444|consen 247 LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL 283 (314)
T ss_pred HHHhhccccceeehhhhhhHHHHHHHHhcCCceechh
Confidence 6899999999999997777778888888888888764
No 32
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.66 E-value=1.6e-05 Score=69.96 Aligned_cols=259 Identities=12% Similarity=0.074 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHhhhcccC--CCCCCC------CCHHHHH
Q 041987 13 VPFTLMVIMEGCTIGLTIVTKTAMNGG---MSPFVFIAYTNALGSILLLPYSFFFHHRG--SEAQPL------FTLPLML 81 (280)
Q Consensus 13 ~~~l~~~~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~------~~~~~~~ 81 (280)
.-.+.++...+.++......|.+-..+ ..|...++.--++-.+++....+.. .|+ ++..+. .++++.+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFE-ERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhcCHHHHhChHHHH
Confidence 456667777889999999999997665 6788888888888877777766654 322 111011 1245667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc----------ceeeeCCC-----CC
Q 041987 82 RFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK----------LEAKINPP-----LL 146 (280)
Q Consensus 82 ~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~----------g~~ii~~~-----~~ 146 (280)
+..+-+++- ++.+.+.|.++.+.+++.-.+..++--+.|+++..++++||.+++ |+++.... ..
T Consensus 94 k~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a 172 (345)
T KOG2234|consen 94 KVSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA 172 (345)
T ss_pred HHHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 777777765 477789999999999999999999999999999999999999987 33333311 11
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-chHHHHHHHHHHHHHHHHHHHhhcccccccc----cchhh
Q 041987 147 IFYSTPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQ-VMKVVSFYSLAGTIQCSIFSLIMERNINAWK----LKLNM 221 (280)
Q Consensus 147 ~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~ 221 (280)
.......+...|....+.+++.-++..++..|+.|+-+. .+..+...+++|.++.+...+..+.....|. -.+..
T Consensus 173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~ 252 (345)
T KOG2234|consen 173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSI 252 (345)
T ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHH
Confidence 112345667899999999999999999999999987432 3445555567777776666554432111111 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 222 ELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 222 ~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
.|..++..++ +=.+-...+|+.+--.=+....+..+++.+.++.++|-++|+
T Consensus 253 vw~vVl~~a~-----gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~ 304 (345)
T KOG2234|consen 253 VWLVVLLNAV-----GGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTL 304 (345)
T ss_pred HHHHHHHHhc-----cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 2444443433 334555566777766666666678888999998888888875
No 33
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.66 E-value=9e-06 Score=69.85 Aligned_cols=233 Identities=11% Similarity=0.039 Sum_probs=156.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHH
Q 041987 40 MSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPA 119 (280)
Q Consensus 40 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~ 119 (280)
-+|..+.+..-+.+.+.-...... +++..+++. .|+++...++... +..+|-+.|++|.+=-.-.+-=..=-+
T Consensus 49 ~~~~fL~~~q~l~~~~~s~~~l~~---~k~~~~~~a---pl~~y~~is~tn~-~s~~~~yeaLKyvSyPtq~LaKscKmI 121 (327)
T KOG1581|consen 49 EHSLFLVFCQRLVALLVSYAMLKW---WKKELSGVA---PLYKYSLISFTNT-LSSWCGYEALKYVSYPTQTLAKSCKMI 121 (327)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhc---ccccCCCCC---chhHHhHHHHHhh-cchHHHHHHHHhccchHHHHHHHhhhh
Confidence 356677777777776655333322 222211333 3666777777765 788899999999864322222222233
Q ss_pred HHHHHHHHhhccccCCc----------ceee--eCCCCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-C
Q 041987 120 ISFLLSIITRKAASDDK----------LEAK--INPPLL-IFYSTPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYP-Q 185 (280)
Q Consensus 120 ~~~il~~i~~~ek~~~~----------g~~i--i~~~~~-~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~ 185 (280)
-+++.+.++.|+|.+.+ |+.+ +..... ....+.++...|..+....-+.=++-+..++++-+++. +
T Consensus 122 PVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s 201 (327)
T KOG1581|consen 122 PVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVS 201 (327)
T ss_pred HHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCcc
Confidence 34588899999999988 2211 111111 12234456789999999888888888888998887653 4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccccc--ccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHHHH
Q 041987 186 VMKVVSFYSLAGTIQCSIFSLIMERNIN--AWKLKLNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVF 263 (280)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~ 263 (280)
+..++....+++++.........+.... ++.-..+.-+.-++.... +.++++.+.++-+++-|+-.-..+..+.=.+
T Consensus 202 ~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~ 280 (327)
T KOG1581|consen 202 SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMV 280 (327)
T ss_pred HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHH
Confidence 7889999999999988776443332111 111112223555566666 4568999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCC
Q 041987 264 ATAFGLTFFTNSLHYGR 280 (280)
Q Consensus 264 a~~l~~~~l~E~it~~~ 280 (280)
++.++.+++|+++++.|
T Consensus 281 si~lS~i~f~h~~s~~q 297 (327)
T KOG1581|consen 281 SIMLSCIVFGHPLSSEQ 297 (327)
T ss_pred HHHHHHHHhCCccchhh
Confidence 99999999999998753
No 34
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.62 E-value=3.1e-07 Score=76.79 Aligned_cols=246 Identities=13% Similarity=0.065 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041987 17 LMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQN 96 (280)
Q Consensus 17 ~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~ 96 (280)
..+++.++=+..+.....+-.+--.|..=.+.-..+=+++-.++..++ |+. .+.+ |..++++|++.. =.++
T Consensus 23 GQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR--~~~---~~~~---~~hYilla~~DV-EaNy 93 (336)
T KOG2766|consen 23 GQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFR--RKY---IKAK---WRHYILLAFVDV-EANY 93 (336)
T ss_pred HHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhh--hHH---HHHH---HHHhhheeEEee-cccE
Confidence 445566666666666666643224577778888888888888887764 332 2344 444777888776 4566
Q ss_pred HHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---ceee-------e-CC-CCCCCCCCCchhHHHHHHHHH
Q 041987 97 LAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---LEAK-------I-NP-PLLIFYSTPDRWVLGSTLLAA 164 (280)
Q Consensus 97 ~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g~~i-------i-~~-~~~~~~~~~~~~~~G~~~~l~ 164 (280)
+...|.|||+-.....+-.-.-..+.+++|+++|.|-++. |+.+ + .. .+.++..++.++..||++.+.
T Consensus 94 ~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~ 173 (336)
T KOG2766|consen 94 FVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIA 173 (336)
T ss_pred EEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEe
Confidence 7888999999887777765444456789999999998876 5422 1 11 123345567788999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 041987 165 SSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMER-NINAWKLKLNMELLLIIITAIFGSVIRSTVHVS 243 (280)
Q Consensus 165 aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~ 243 (280)
+|.+||..++....+.|+.+ ..+.+....++|+++...- .+.+. +.... +++......+- ...+.++=|.+.-.
T Consensus 174 GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl--~w~~~i~~yl~-f~L~MFllYsl~pi 248 (336)
T KOG2766|consen 174 GATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHHVSTL--HWDSAIFLYLR-FALTMFLLYSLAPI 248 (336)
T ss_pred cceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-HhhhccceeeE--eehHHHHHHHH-HHHHHHHHHHhhHH
Confidence 99999999999999888886 7788888888999987665 44444 22222 22212222121 23355566667777
Q ss_pred hhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 244 CAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 244 a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
.+|.-+++...+-....-.|+.++ ..+|-++.|
T Consensus 249 l~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~w 281 (336)
T KOG2766|consen 249 LIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDW 281 (336)
T ss_pred heecCCceEEEhhHhHHHHHHHHH--HHHhcchhh
Confidence 789999999999999999999888 445544544
No 35
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.60 E-value=4.8e-07 Score=79.13 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 041987 159 STLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRS 238 (280)
Q Consensus 159 ~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 238 (280)
.++.+.++++||...+..|+..++.+ + ...+....+++...|........ ..|.....+.+.. ...+.++....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRLPATFWLL-LAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhccc-CCCCCcchhhHHH-HHHHHHHHHHHH
Confidence 36789999999999999997766533 3 34555566666666665532111 1233322233333 334455778899
Q ss_pred HHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 239 TVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 239 ~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
.++++++++.+++.++++.+.+|+++.+++++++||+++..
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~ 118 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL 118 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999864
No 36
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.60 E-value=2.9e-07 Score=79.34 Aligned_cols=120 Identities=9% Similarity=0.022 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccc---cccccchhh-HHHHHHHHHHH
Q 041987 157 LGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNI---NAWKLKLNM-ELLLIIITAIF 232 (280)
Q Consensus 157 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~g~~ 232 (280)
.|..+.++++++|+...+..|. ..+.+ |.+..++.++++++.+.++.....+.. ..++..... .+......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4888999999999999999997 45676 999999999999888766554332100 011111111 23344556654
Q ss_pred HHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 233 GSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 233 ~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
....+.++++++++.++..++...++.|+++.++++++++|+++..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~ 125 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF 125 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 5688999999999999999999999999999999999999999864
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.43 E-value=5.2e-06 Score=73.16 Aligned_cols=116 Identities=13% Similarity=0.161 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHH
Q 041987 12 MVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGV 91 (280)
Q Consensus 12 ~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~ 91 (280)
..+.++++.++++|+...+..|...++ .+|.... +..+.+.+.+..... +.. . ...+...+......|+ ..
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~---~~~~~~~l~~~~~~~-~~~-~--~~~~~~~~~~l~~~~~-~t 225 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLF---FILTALALWIKYFLS-PQP-A--MVFSLPAIIKLLLAAA-AM 225 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHH---HHHHHHHHHHHHHHh-cCc-c--ccCCHHHHHHHHHHHH-HH
Confidence 458899999999999999999997654 7877653 233444444433332 211 1 2245566766766664 44
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 92 AISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
.+.+.++++++++++++.++.+.++.|++..++++++++|+++..
T Consensus 226 ~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~ 270 (295)
T PRK11689 226 GFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS 270 (295)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH
Confidence 678999999999999999999999999999999999999999665
No 38
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.41 E-value=4.9e-05 Score=65.45 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=153.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhccc
Q 041987 28 LTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLML-RFFFLGLTGVAISQNLAFFGLYYSS 106 (280)
Q Consensus 28 ~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gl~g~~~~~~~~~~~l~~~~ 106 (280)
.+...+.-.+. -=|...+.....+-.+.-.......+++..+.+...+|++.+ +++..|+.+ +++-.+.+++++|++
T Consensus 32 tf~~~~~~~~f-~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVt 109 (349)
T KOG1443|consen 32 TFYFKWLTKNF-HFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVT 109 (349)
T ss_pred HHHhhhhhcCc-CCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeee
Confidence 44444443333 457777777776655544443332201111101345666655 555566655 588889999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHhhccccCCc-ce--eeeCCC-CCCCCCCCchhHHHHHHHHHHHHH----HHHHHHHHHh
Q 041987 107 PIVVCVMGLLIPAISFLLSIITRKAASDDK-LE--AKINPP-LLIFYSTPDRWVLGSTLLAASSLS----VCVWNIIQVG 178 (280)
Q Consensus 107 ~~~a~vi~~~~P~~~~il~~i~~~ek~~~~-g~--~ii~~~-~~~~~~~~~~~~~G~~~~l~aa~~----~a~~~v~~~~ 178 (280)
.+.-+..=++.++|+.+.+.++.-||.++. .. .+|..+ ..-...+.+.+..|..+.+.|.++ |+.-..+.|+
T Consensus 110 lSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~ 189 (349)
T KOG1443|consen 110 LSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRN 189 (349)
T ss_pred eeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 999888889999999999999999999998 21 111111 000122344556787777766655 5555444444
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHHHhhccccc-----ccccchhh-HHHHHHHHHHHHHHHHHHH---HHhhhhccC
Q 041987 179 TIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNIN-----AWKLKLNM-ELLLIIITAIFGSVIRSTV---HVSCAEMKG 249 (280)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~g~~~t~~~~~~---~~~a~~~~~ 249 (280)
-.-..++|........-...+.++|..+.+|++.. .+...+.. .+..+...+. +...++.+ =+...++.+
T Consensus 190 ~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts 268 (349)
T KOG1443|consen 190 QPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTS 268 (349)
T ss_pred CccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeecc
Confidence 32122357777777777777888888888877421 12222221 1222223322 33333333 234568888
Q ss_pred cceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 250 HLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 250 ~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
.-..|+..-.--+...++|.++.+|.++.
T Consensus 269 ~ltlSIaGI~Kel~tl~la~ii~~d~ls~ 297 (349)
T KOG1443|consen 269 SLTLSIAGIVKEVCTLLLAIIILKDQLSL 297 (349)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHhhcchhh
Confidence 88899999999999999999999999874
No 39
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.41 E-value=3e-06 Score=66.96 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc------CCCchHHHHHHHHHHHHHHHHHHHhhccccc-c--cccc------hhhH
Q 041987 158 GSTLLAASSLSVCVWNIIQVGTIKQ------YPQVMKVVSFYSLAGTIQCSIFSLIMERNIN-A--WKLK------LNME 222 (280)
Q Consensus 158 G~~~~l~aa~~~a~~~v~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~--~~~~------~~~~ 222 (280)
|.++++.+.++.|++.++.|+..++ ..++..+..+....+.+.+.+...+.|.+.. . .... ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999887665 2357888999999999999999887765321 1 0010 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 223 LLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 223 ~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+..++..|+ ....-....+..+++.+|...++....-.+...+++++++||++|..
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~ 136 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL 136 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH
Confidence 555555666 44566777888999999999999999999999999999999999864
No 40
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.31 E-value=1.8e-05 Score=71.44 Aligned_cols=120 Identities=10% Similarity=0.082 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHhhhcccCCCC--CCCCCHHHHHHHHHHHHH
Q 041987 13 VPFTLMVIMEGCTIGLTIVTKTAMNGGMSP-FVFIAYTNALGSILLLPYSFFFHHRGSEA--QPLFTLPLMLRFFFLGLT 89 (280)
Q Consensus 13 ~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gl~ 89 (280)
.+.+.++.++++|+...+..|...+. .+| ....++...++++.+.+..... .+.... ....+.. ..-....++.
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~i~y~~i~ 265 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV-EKNNPSVWIIHFDIT-LITIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH-ccCCcccceeccchH-HHHHHHHHHH
Confidence 37789999999999999999988765 544 4666677777766665555543 332110 0112222 2223334444
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 90 GVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 90 g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
. .+.+.++++++++.+++.++...++.|++++++++++++|+++..
T Consensus 266 t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~ 311 (358)
T PLN00411 266 T-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG 311 (358)
T ss_pred H-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH
Confidence 3 467889999999999999999999999999999999999999765
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.27 E-value=6.9e-05 Score=64.39 Aligned_cols=189 Identities=13% Similarity=0.025 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhh-hhHHHHHHHHHHhhccccCCc----ce---eee------C
Q 041987 77 LPLMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGL-LIPAISFLLSIITRKAASDDK----LE---AKI------N 142 (280)
Q Consensus 77 ~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~-~~P~~~~il~~i~~~ek~~~~----g~---~ii------~ 142 (280)
.+.+....+.|++= .+.|...+.|.++...+.+--+-. .+=+-+.+++.++++|--+.+ |. .++ .
T Consensus 42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 36677777777665 488999999999999998877764 445568889999999988766 33 111 1
Q ss_pred -CCCCCCC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHH-Hhhcccccccccc
Q 041987 143 -PPLLIFY--STPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFS-LIMERNINAWKLK 218 (280)
Q Consensus 143 -~~~~~~~--~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 218 (280)
..+.+.. ++..+...|....+++.+.|..|.+..|. .+.+ +.....-| .+|-++...+. .+.+.+. ++-
T Consensus 121 s~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~-~~~~~lPq-aiGm~i~a~i~~~~~~~~~--~~k- 193 (269)
T PF06800_consen 121 SYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVS-GWSAFLPQ-AIGMLIGAFIFNLFSKKPF--FEK- 193 (269)
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCC-hhHhHHHH-HHHHHHHHHHHhhcccccc--ccc-
Confidence 1111111 12345578999999999999999998765 3343 54443322 23333322222 2112211 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccc
Q 041987 219 LNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLH 277 (280)
Q Consensus 219 ~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it 277 (280)
..+..+ ..|+ .=.++..++..+.++.|.+..=.+.-+.++++.+.+.+++||+=+
T Consensus 194 --~~~~ni-l~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt 248 (269)
T PF06800_consen 194 --KSWKNI-LTGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKT 248 (269)
T ss_pred --chHHhh-HHHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCc
Confidence 112222 2333 223566778889999999999999999999999999999999743
No 42
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.23 E-value=5.1e-05 Score=66.94 Aligned_cols=124 Identities=13% Similarity=0.165 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHhhhcccCCC---CCCCCCHHHHHHHHHH
Q 041987 12 MVPFTLMVIMEGCTIGLTIVTKTAMNGGMSP--FVFIAYTNALGSILLLPYSFFFHHRGSE---AQPLFTLPLMLRFFFL 86 (280)
Q Consensus 12 ~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 86 (280)
..+.++.+.+.++|+...+..|...+..-+| .....+-..++.+.+....... +.... .....+...+..+...
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL-DGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhhccCCHHHHHHHHHH
Confidence 4699999999999999999999875432122 2333334444444333332222 22110 0013456678888889
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 87 GLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 87 gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
|+++..+.+.+++.++++.+++.++.+..+.|++..++++++++|+++..
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~ 270 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL 270 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 99998889999999999999999999999999999999999999998544
No 43
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=3.5e-05 Score=65.37 Aligned_cols=234 Identities=11% Similarity=0.064 Sum_probs=153.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhcccC-CCC-CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhh
Q 041987 41 SPFVFIAYTNALGSILLLPYSFFFHHRG-SEA-QPL--FTLPLMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLL 116 (280)
Q Consensus 41 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~ 116 (280)
.|....++..++...+.+.+.... .+- ..+ .++ .+.+.-+.+.-+..+-. +.-.+..+.++|.+++.--+==.+
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls-~k~~~~ftfp~~~ldl~t~r~vlplsvVfi-~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLS-VKYPGLFTFPSLQLDLATARQVLPLSVVFI-LMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-hhccceeccCcccccHHHHHhhcchhheee-eehhccceehhhcceEEEEeccch
Confidence 588889999998888887776544 221 110 122 33333333333333322 333445677777776643333346
Q ss_pred hHHHHHHHHHHhhccccCCc---ce--eeeCCCCCCCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CchH
Q 041987 117 IPAISFLLSIITRKAASDDK---LE--AKINPPLLIFYS--TPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYP-QVMK 188 (280)
Q Consensus 117 ~P~~~~il~~i~~~ek~~~~---g~--~ii~~~~~~~~~--~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~ 188 (280)
.-.|+.++.+.++|+|-+.. +. .+++...+.+++ .+.....|.++...|.++-|+..+..||.....+ +-+.
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~ 217 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWR 217 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehh
Confidence 67889999999999999888 22 233333332233 3455578999999999999999999998776644 3467
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc--cccccc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHHHHHH
Q 041987 189 VVSFYSLAGTIQCSIFSLIMERNI--NAWKLK-LNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFAT 265 (280)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ 265 (280)
.+.+....+.++.+|...+.+.-. ..++.. ...-|..+...|+++-.++|. -.+-+|-.+|..=.+....--..=.
T Consensus 218 lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyv-Tg~QIK~TSplThnISgTAka~aQT 296 (347)
T KOG1442|consen 218 LTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQT 296 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhe-eeEEEEecccceeeecHhHHHHHHH
Confidence 888899999999888877654311 122222 233477777788877666643 3456677777777777777778888
Q ss_pred HHHHHHhcCccc
Q 041987 266 AFGLTFFTNSLH 277 (280)
Q Consensus 266 ~l~~~~l~E~it 277 (280)
++++.+++|.-+
T Consensus 297 vlAv~~y~E~ks 308 (347)
T KOG1442|consen 297 VLAVAYYSETKS 308 (347)
T ss_pred HHHHHHHHHHhh
Confidence 899999999765
No 44
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.18 E-value=2.7e-05 Score=64.67 Aligned_cols=186 Identities=14% Similarity=0.041 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc----------ceeeeCCCCCC-CCCCCchhHH
Q 041987 89 TGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK----------LEAKINPPLLI-FYSTPDRWVL 157 (280)
Q Consensus 89 ~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~----------g~~ii~~~~~~-~~~~~~~~~~ 157 (280)
....+.+...+.+++|.+=-...+=-+.-|+-+++++.++.+++-+++ |+++....... ....++....
T Consensus 93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~ 172 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGF 172 (337)
T ss_pred HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccch
Confidence 334466777889999988766555556779999999999999999988 22222211111 1123455678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHHHHHHHhhcccccccccc-----hhhHHHHHHHHHH
Q 041987 158 GSTLLAASSLSVCVWNIIQVGTIKQYP-QVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLK-----LNMELLLIIITAI 231 (280)
Q Consensus 158 G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~ 231 (280)
|.++.+++-.-=+.-...+.++.+.+. ..-.++.+..+++.+.+..-.++.+. .|.+. -+..|.-+...++
T Consensus 173 GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE---lweF~yF~~RhP~~~~~l~l~ai 249 (337)
T KOG1580|consen 173 GELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE---LWEFFYFVQRHPYVFWDLTLLAI 249 (337)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh---HHHHHHHHHhccHHHHHHHHHHH
Confidence 999999988777777778888776553 24578888889998887666555443 12211 1223555566666
Q ss_pred HHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 232 FGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 232 ~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
++++++++.++-+.+-||-.-|+.....-.++++.++++++++++.
T Consensus 250 -~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~ 295 (337)
T KOG1580|consen 250 -ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSG 295 (337)
T ss_pred -HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcH
Confidence 7889999999999999999999999999999999999999999874
No 45
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.17 E-value=1.3e-05 Score=70.83 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=99.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC--------CCHHHH
Q 041987 10 EEMVPFTLMVIMEGCTIGLTIVTKTAMNG-GMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPL--------FTLPLM 80 (280)
Q Consensus 10 ~~~~~~l~~~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~--------~~~~~~ 80 (280)
.+..|.++.++++++|+...+..|...++ +.||..+..+-...+.+.+.|+.... +..... +. .+....
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 219 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT-EGPPFL-PHGFMQAISGVNVTKI 219 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH-cchHHH-HHHHHHhhcccCchHH
Confidence 34569999999999999999999998761 38999999999999999999987654 321100 00 010111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCcceeeeCCCCCCCCCCCchhHHHH
Q 041987 81 LR-FFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDKLEAKINPPLLIFYSTPDRWVLGS 159 (280)
Q Consensus 81 ~~-~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~g~~ii~~~~~~~~~~~~~~~~G~ 159 (280)
.. ....+.......+.+++.+++++++..+++.....|++++++++++++|+++.. ...|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------------------~~~G~ 281 (302)
T TIGR00817 220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------------------QVFGT 281 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------------------HHHHH
Confidence 11 222222222233457778999999999999999999999999999999998543 34566
Q ss_pred HHHHHHHHHHH
Q 041987 160 TLLAASSLSVC 170 (280)
Q Consensus 160 ~~~l~aa~~~a 170 (280)
.+.+.+...+.
T Consensus 282 ~lil~Gv~l~~ 292 (302)
T TIGR00817 282 GIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHH
Confidence 66666665444
No 46
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.06 E-value=0.00023 Score=56.02 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCC----CC-----CCHH
Q 041987 14 PFTLMVIMEGCTIGLTIVTKTAMNG------GMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQ----PL-----FTLP 78 (280)
Q Consensus 14 ~~l~~~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~----~~-----~~~~ 78 (280)
|....+.+.++-+.-.+..|..+++ +.+|.++..+-...+.+++++..... ++.+..+ .+ .+.+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL-EGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhhhhcchHH
Confidence 4567889999999999999998866 69999999999999999999988876 4432100 00 0234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 79 LMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 79 ~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
.+..+...|+++. ..+...+.-++++++...++....-.+.+.+++.++++|+++..
T Consensus 80 ~~~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~ 136 (153)
T PF03151_consen 80 FIFLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL 136 (153)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH
Confidence 4566666777765 78889999999999999999999999999999999999998655
No 47
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.97 E-value=0.00065 Score=61.37 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=88.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHhhhcccCCC---------CCCC
Q 041987 10 EEMVPFTLMVIMEGCTIGLTIVTKTAMNG------GMSPFVFIAYTNALGSILLLPYSFFFHHRGSE---------AQPL 74 (280)
Q Consensus 10 ~~~~~~l~~~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~---------~~~~ 74 (280)
.+..|.++.++++++|+.-.+..|..+++ ..++.....+-...++++++|+.... +.... ....
T Consensus 191 ~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-e~~~~~~~~~~~~~~~~~ 269 (350)
T PTZ00343 191 FTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF-EGKKWVPVWTNYTANMTN 269 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccc
Confidence 34679999999999999999999998864 25677777777889999999887643 22100 0001
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 75 FTLPLMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 75 ~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
..+.......+.+.+...+.+.+.|++++++++...++....-|+++.++++++++|+++..
T Consensus 270 ~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~ 331 (350)
T PTZ00343 270 YTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL 331 (350)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH
Confidence 11111222222222223344445567999999999999999999999999999999998654
No 48
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.94 E-value=0.00034 Score=60.62 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 041987 12 MVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIA-YTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTG 90 (280)
Q Consensus 12 ~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g 90 (280)
..+.+..+.+.++|+...+..|... + .++..... +.+..+.....+.... .++ ...+.+.+......|+++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~g~~~ 224 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFFLS--GFG----APILSRAWLLLLYLGVFS 224 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHhc--ccc----ccCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999776 3 67777776 4444333333333221 111 134566788888889888
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 91 VAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
....+.+++++++..+++..+.+..+.|++..++++++++|+++..
T Consensus 225 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~ 270 (292)
T COG0697 225 TGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA 270 (292)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 7678999999999999999999999999999999999999999766
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.80 E-value=0.00015 Score=55.68 Aligned_cols=102 Identities=10% Similarity=0.072 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 041987 157 LGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVI 236 (280)
Q Consensus 157 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 236 (280)
.|.++.+.+.++-+...++-|+-.++.+ +.+.... . .. ..... . + -...+++|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~~-~~~~~-~-----~--------p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----IA-ALLAF-G-----L--------ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----HH-HHHHH-h-----c--------cHHHHHHHHHHHHH
Confidence 3667889999999999999998887765 3222111 0 10 00000 0 0 01136788999999
Q ss_pred HHHHHHhhhhccCcceeccccchHHHHHHHHHHH--HhcCccccC
Q 041987 237 RSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLT--FFTNSLHYG 279 (280)
Q Consensus 237 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~--~l~E~it~~ 279 (280)
+|.+|.+++++.|.+.+.++....++...+.++. ++||++|+.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~ 105 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK 105 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999888888885 899999975
No 50
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.75 E-value=0.00054 Score=60.21 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH----HHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHH
Q 041987 12 MVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNA----LGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLG 87 (280)
Q Consensus 12 ~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~----~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 87 (280)
+|++.+.+++.+.++...+..|.. + .||.+..+.... .+.+++.++ .+ + + +.. .+..+...+.|
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~~-~---~--~~~-~~~~~~~~~~G 218 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--IL-A---K--PLK-KYAILLNILPG 218 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--hc-c---c--chH-HHHHHHHHHHH
Confidence 789999999999999999999975 3 789988655554 444433333 11 1 2 222 33344455588
Q ss_pred HHHHHHHHHHHHHHhh-ccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 88 LTGVAISQNLAFFGLY-YSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 88 l~g~~~~~~~~~~~l~-~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
++- .+.+.+++.|.+ +.+++.++.+.+..|+...+.+.+++||+.+++
T Consensus 219 i~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~ 267 (290)
T TIGR00776 219 LMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR 267 (290)
T ss_pred HHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 875 578889999999 999999999999999999999999999999877
No 51
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.70 E-value=0.015 Score=52.01 Aligned_cols=258 Identities=9% Similarity=0.015 Sum_probs=143.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHHHHHH-HHhhhccc---CCCCCCCCCHHHHHHHH
Q 041987 10 EEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNA-LGSILLLP-YSFFFHHR---GSEAQPLFTLPLMLRFF 84 (280)
Q Consensus 10 ~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~-~a~l~l~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 84 (280)
+-..+++..++++++||+.++..|. .+. -++|.-+.-.. ++.+++-. ...+. .| ... ...+.+.+....
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~--w~wE~~W~v~gi~~wl~~~~~~g~~~-~~~f~~~~--~~~~~~~~~~~~ 77 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKK--WSWETMWSVGGIFSWLILPWLIAALL-LPDFWAYY--SSFSGSTLLPVF 77 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCC--CchhHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHH--HhcCHHHHHHHH
Confidence 3456899999999999999999998 333 23333322111 11111110 01111 11 111 224556666666
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHHHHHhhcccc---CCc-------ceeee-------CC---
Q 041987 85 FLGLTGVAISQNLAFFGLYYSSPIVVCVMG-LLIPAISFLLSIITRKAAS---DDK-------LEAKI-------NP--- 143 (280)
Q Consensus 85 ~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~-~~~P~~~~il~~i~~~ek~---~~~-------g~~ii-------~~--- 143 (280)
+.|.+= .+.+..++.++++...+.+--+. .++-+...++..++++|=. +.. |++++ ..
T Consensus 78 l~G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 78 LFGALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677665 47899999999999999887776 4777888888888888654 333 22111 11
Q ss_pred -CCCCC-C--CCCchhHHHHHHHHHHHHHHHHHH-------HHHHhhhh-cCCCchHHHHH---HHHHHHHHHHHHHHh-
Q 041987 144 -PLLIF-Y--STPDRWVLGSTLLAASSLSVCVWN-------IIQVGTIK-QYPQVMKVVSF---YSLAGTIQCSIFSLI- 207 (280)
Q Consensus 144 -~~~~~-~--~~~~~~~~G~~~~l~aa~~~a~~~-------v~~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~~~~- 207 (280)
.+.+. + +++.+...|...++++.+.++.|. ...+...+ +.+ +.....- .++.|++..-.+...
T Consensus 157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~-~~~~~lp~~~~~~~G~~~~n~~~~~~ 235 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVD-PLYAALPSYVVIMGGGAITNLGFCFI 235 (345)
T ss_pred hcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 1 223466899999999999999999 44433211 222 3322222 233555544432211
Q ss_pred ---hcccc---cccccch---hhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceecc---cc-chHHHHHHHHHHHHhcC
Q 041987 208 ---MERNI---NAWKLKL---NMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPM---FK-PFGIVFATAFGLTFFTN 274 (280)
Q Consensus 208 ---~~~~~---~~~~~~~---~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~---~~-~l~pv~a~~l~~~~l~E 274 (280)
.+++. .+...+. .++...-+..|+ .=.+++.+|..+-++.|...... +. -+..+++.+.+. +++|
T Consensus 236 ~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE 313 (345)
T PRK13499 236 RLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKE 313 (345)
T ss_pred HHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhh
Confidence 11111 1111100 112221122333 23456778888888887665544 44 666799999998 5999
Q ss_pred ccc
Q 041987 275 SLH 277 (280)
Q Consensus 275 ~it 277 (280)
.=+
T Consensus 314 ~K~ 316 (345)
T PRK13499 314 WKG 316 (345)
T ss_pred ccC
Confidence 633
No 52
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.69 E-value=0.00012 Score=54.91 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHH
Q 041987 192 FYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTF 271 (280)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~ 271 (280)
+.+.++.+....+.....+....+.....+.+...+..|+++...++.+|.++.++.++ .+++...+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554442211001111112335555666776777899999999999995 88899999999999999999
Q ss_pred hcCccccC
Q 041987 272 FTNSLHYG 279 (280)
Q Consensus 272 l~E~it~~ 279 (280)
++|+++..
T Consensus 82 ~~er~~~~ 89 (113)
T PF13536_consen 82 FKERLSPR 89 (113)
T ss_pred hcCCCCHH
Confidence 99999853
No 53
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.53 E-value=0.0028 Score=54.27 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHhhhccc----CCCC---------CCCCCHHHHHHHHH
Q 041987 26 IGLTIVTKTAMN---GGMS----PFVFIAYTNALGSILLLPYSFFFHHR----GSEA---------QPLFTLPLMLRFFF 85 (280)
Q Consensus 26 g~~~~~~k~~~~---~~~~----p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~---------~~~~~~~~~~~~~~ 85 (280)
..+.+++|++-+ +|.| |+.-...-|+.=++.+..+...+ .| +... +++.+...+..
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir-~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~--- 91 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR-LRSNGQGVSSDLDSILSQDSSPFNPVLFLP--- 91 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCcccccccccccccCCCCcceecC---
Confidence 467888998842 2233 66666666666666666665554 33 1110 01222222222
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc---c-------eeeeCCC--CC--CCCCC
Q 041987 86 LGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK---L-------EAKINPP--LL--IFYST 151 (280)
Q Consensus 86 ~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~---g-------~~ii~~~--~~--~~~~~ 151 (280)
-+++.. ....+.|.|+.+|+++.-..+=...-+|+.+++.-+++++++.+ | +++++.. .. +..+.
T Consensus 92 Pal~Di-~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d 170 (372)
T KOG3912|consen 92 PALCDI-AGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTD 170 (372)
T ss_pred hHHHHH-hhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccc
Confidence 445554 56678899999999999998888999999999999999999866 3 3333322 11 12233
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHHHHHH
Q 041987 152 PDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYP-QVMKVVSFYSLAGTIQCSIFS 205 (280)
Q Consensus 152 ~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~ 205 (280)
.++...|+++.+.|=+.-|.-.+.-+|..++.+ +|.....|.-++|.+++....
T Consensus 171 ~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~ 225 (372)
T KOG3912|consen 171 YSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA 225 (372)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence 456689999999999999999998777666532 488888998888855554433
No 54
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.45 E-value=0.00047 Score=56.96 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=133.3
Q ss_pred HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc-----ceeeeCCC---CCCCC---CCCchhHHHHHHH
Q 041987 94 SQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK-----LEAKINPP---LLIFY---STPDRWVLGSTLL 162 (280)
Q Consensus 94 ~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~-----g~~ii~~~---~~~~~---~~~~~~~~G~~~~ 162 (280)
.-+.--.+++|.+...-++.-++.-+.++.....+++.|.+.. ++-++... -++.+ ......+.|-+|+
T Consensus 81 MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm 160 (309)
T COG5070 81 MIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWM 160 (309)
T ss_pred HHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEE
Confidence 3344567899999999999989999999999999999999877 22111110 00001 1122345788999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHHHHHHHhhcc-ccccccc-chhhHHHHHHHHHHHHHHHHHH
Q 041987 163 AASSLSVCVWNIIQVGTIKQYP-QVMKVVSFYSLAGTIQCSIFSLIMER-NINAWKL-KLNMELLLIIITAIFGSVIRST 239 (280)
Q Consensus 163 l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~g~~~t~~~~~ 239 (280)
...++.-+.+....|+..+-.. .-...++|..+.+..+++.+.++.|+ ++.+... .+...+.+++..|+.+.+++ +
T Consensus 161 ~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiS-y 239 (309)
T COG5070 161 FTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGIS-Y 239 (309)
T ss_pred ehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhh-h
Confidence 9999999999988887655311 24578889998888888888877765 2211111 12234667788888665555 5
Q ss_pred HHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 240 VHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 240 ~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+-.|.+|-.+++.-|....+.-.-..+-|.+++||+.+.+
T Consensus 240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~ 279 (309)
T COG5070 240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL 279 (309)
T ss_pred ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH
Confidence 6789999999999999999999999999999999998764
No 55
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.42 E-value=0.0012 Score=56.75 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHH
Q 041987 154 RWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWK-LKLNMELLLIIITAIF 232 (280)
Q Consensus 154 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 232 (280)
+...|.++.+.|-+-|+..-.+.|- .++.+ +.++..+..+++...++...........-++ ..+++.+......+..
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 3457999999999999998888775 46666 8899999999998888776655432111111 2233445665656553
Q ss_pred HHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 233 GSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 233 ~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
- ..-.+.|.|+.......++|.=.++.|.+.+++|.++++|+++-.
T Consensus 82 i-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~ 127 (293)
T COG2962 82 I-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL 127 (293)
T ss_pred H-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3 488999999999999999999999999999999999999998753
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.35 E-value=0.0006 Score=51.02 Aligned_cols=51 Identities=6% Similarity=-0.036 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 229 TAIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 229 ~g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
.++++.+.++.++.+++|+.+.+++.....+.|+++.++|++++||++|+.
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~ 92 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR 92 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344677789999999999999999999999999999999999999999874
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.30 E-value=0.0012 Score=49.43 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 83 FFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 83 ~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
....++++......++..+++..|.+.+..+.++.|+++.+++++++|||++.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~ 92 (111)
T PRK15051 39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR 92 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 334455666788999999999999999999999999999999999999999987
No 58
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.25 E-value=0.005 Score=50.05 Aligned_cols=87 Identities=14% Similarity=0.020 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc----------ceeeeCCCCCCCCCCCchhHHHHHHH
Q 041987 93 ISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK----------LEAKINPPLLIFYSTPDRWVLGSTLL 162 (280)
Q Consensus 93 ~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~----------g~~ii~~~~~~~~~~~~~~~~G~~~~ 162 (280)
..++.|..+++..++++++.+...+..|+.+++++.+++|.... |+.++... .+.......|+.++
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~----DN~~a~e~iGi~~A 140 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA----DNEHADEIIGIACA 140 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec----cchhhhhhhhHHHH
Confidence 46789999999999999999999999999999999999998755 33333322 23345567899999
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q 041987 163 AASSLSVCVWNIIQVGTIKQY 183 (280)
Q Consensus 163 l~aa~~~a~~~v~~~~~~~~~ 183 (280)
..++..-|.|-|+-|+...+.
T Consensus 141 V~SA~~aAlYKV~FK~~iGnA 161 (290)
T KOG4314|consen 141 VGSAFMAALYKVLFKMFIGNA 161 (290)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999887753
No 59
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.09 E-value=0.012 Score=52.55 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=93.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 041987 9 EEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGL 88 (280)
Q Consensus 9 ~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 88 (280)
.+..+|.+.++.++.++|...+.-|...++ .|+.+....=-+.+.++..+..... +|+.....+.+.+....+...++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~w~~~~~~~~v~~~~ 241 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIHWTSQVIGLLVGYAL 241 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccCCChhhHHHHHHHHH
Confidence 456889999999999999999999999987 8998888777788888887776665 66443112234444433333332
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 89 TGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 89 ~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
..+..+.+.-..++++++....+=.-+..++..+++.+++++++++.
T Consensus 242 -~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l 288 (334)
T PF06027_consen 242 -CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL 288 (334)
T ss_pred -HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH
Confidence 23345556677888898887777667888999999999999999987
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.06 E-value=0.072 Score=47.05 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=70.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH
Q 041987 10 EEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLT 89 (280)
Q Consensus 10 ~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 89 (280)
++.-|....+.++++-+.....-|.+..+ .+. .- . ++++. ++...|+..|.. |++
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~---------------~--~~~~~--~~~~l~~~~W~~--G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GS---------------L--RAGSG--GRSYLRRPLWWI--GLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cc---------------c--cccch--hhHHHhhHHHHH--HHH
Confidence 34568888888988988888888887543 110 00 0 00011 111122222333 333
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 90 GVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 90 g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
....+..+.+.|+.+.|++..+-+....-++.++++..++|||++++
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~ 105 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR 105 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh
Confidence 34467788899999999999999999999999999999999999998
No 61
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.98 E-value=0.017 Score=48.94 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 041987 11 EMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTG 90 (280)
Q Consensus 11 ~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g 90 (280)
+..+..+.+.+..||+.--+..|.+-+. .+-..-+..-+.+++++.+|+..-. ... .-.++.........|+++
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~--ag~---~l~~p~ll~laLgvavlS 219 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ--AGP---ALFSPSLLPLALGVAVLS 219 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh--cch---hhcChHHHHHHHHHHHHh
Confidence 4568899999999999999999988654 5666777888999999999987643 221 234556667777888999
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 91 VAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
..+.+.+...+++..+...-+++.++-|.+-++.++++++|+++..
T Consensus 220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~ 265 (292)
T COG5006 220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI 265 (292)
T ss_pred cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999999999999999999999877
No 62
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.93 E-value=0.0068 Score=50.99 Aligned_cols=122 Identities=10% Similarity=0.056 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-hHHHHHHHHHHHHHHHHHHHhhcccc-ccccc--chhhHHHHHHHH
Q 041987 154 RWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQV-MKVVSFYSLAGTIQCSIFSLIMERNI-NAWKL--KLNMELLLIIIT 229 (280)
Q Consensus 154 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~ 229 (280)
+...|....+.+..+-+...+++++..|+.+.. ........+.+.+.........+.+. .++.. ..+...+.+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 158 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIV--- 158 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHH---
Confidence 445677777777777777778888776654311 12222223333332222111111110 11110 011111111
Q ss_pred HHHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 230 AIFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 230 g~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
++..+++..+..+.+|+.|+...+....++++++.+++++++||++|..
T Consensus 159 -~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~ 207 (222)
T TIGR00803 159 -GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST 207 (222)
T ss_pred -HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 2345667788999999999999999999999999999999999999864
No 63
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.0043 Score=52.89 Aligned_cols=243 Identities=12% Similarity=0.067 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHh-CCCCh--HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041987 26 IGLTIVTKTAMN-GGMSP--FVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNLAFFGL 102 (280)
Q Consensus 26 g~~~~~~k~~~~-~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l 102 (280)
=....+-.+..+ .|+.| |-+++..++.=+.+-+...... +.+ + ...++|... .++.+.. ..+.+-.-++
T Consensus 56 l~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k-~--r~iP~rtY~---~la~~t~-gtmGLsn~Sl 127 (367)
T KOG1582|consen 56 LVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTK-R--RVIPWRTYV---ILAFLTV-GTMGLSNGSL 127 (367)
T ss_pred HHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-ccc-c--eecchhHhh---hhHhhhh-hccccCcCcc
Confidence 344444444431 12443 4455555544433333322222 222 2 345655543 3443332 3344445555
Q ss_pred hccchhHHHHhhhh-hHHHHHHHHHHhhccccCCc--ce------eeeCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 041987 103 YYSSPIVVCVMGLL-IPAISFLLSIITRKAASDDK--LE------AKINPPLLIFYSTPDRWVLGSTLLAASSLSVCVWN 173 (280)
Q Consensus 103 ~~~~~~~a~vi~~~-~P~~~~il~~i~~~ek~~~~--g~------~ii~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~ 173 (280)
.|.+=- +.++... --+-+.+.+.++-++|-..+ +. .++.....+.+.+.+.+..|..+.-.|-++=|.--
T Consensus 128 gYLNYP-tQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iG 206 (367)
T KOG1582|consen 128 GYLNYP-TQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIG 206 (367)
T ss_pred ccccCc-HHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhh
Confidence 555433 2444432 22223366677778887766 21 22333333345556677899999988888888888
Q ss_pred HHHHhhhhcCC-CchHHHHHHHHHHHHHHHHHHHhhcccccccccc---hhhHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 041987 174 IIQVGTIKQYP-QVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLK---LNMELLLIIITAIFGSVIRSTVHVSCAEMKG 249 (280)
Q Consensus 174 v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~ 249 (280)
-++.+..+..+ +..++.++.+.+|.+..+....+.+.-++.|..- +.+...+.++.+. .+.++...---.++.-|
T Consensus 207 NvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fG 285 (367)
T KOG1582|consen 207 NVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFG 285 (367)
T ss_pred HHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhc
Confidence 88888877654 3467888888899988877776665533344321 2222334344433 45556566666778889
Q ss_pred cceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 250 HLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 250 ~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
+..++......--.+++++++++..++|.
T Consensus 286 A~~aatvTTaRKavTi~lSfllFsKPfT~ 314 (367)
T KOG1582|consen 286 ALIAATVTTARKAVTILLSFLLFSKPFTE 314 (367)
T ss_pred hhHHHHHHHhHhHHHHHHHHHHHcCchHH
Confidence 99999999999999999999999999875
No 64
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.49 E-value=0.03 Score=43.02 Aligned_cols=102 Identities=16% Similarity=0.049 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 041987 13 VPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVA 92 (280)
Q Consensus 13 ~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~ 92 (280)
++++.+++..++=+..-++.|..+++ .++.+.... . . ..... .. .+ ......|+....
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~------~~~~~--~~-------~p----~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I------AALLA--FG-------LA----LRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H------HHHHH--Hh-------cc----HHHHHHHHHHHH
Confidence 36677777777778888999999876 544332221 1 0 00000 00 11 113446777777
Q ss_pred HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHH--hhccccCCc
Q 041987 93 ISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSII--TRKAASDDK 136 (280)
Q Consensus 93 ~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i--~~~ek~~~~ 136 (280)
+.+.++.++++..+++.+.-+.+..+.++.+.++. +++|+++.+
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~ 105 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK 105 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 88999999999999999999999999888888874 899999887
No 65
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.34 E-value=0.081 Score=45.69 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=82.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 041987 9 EEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGL 88 (280)
Q Consensus 9 ~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 88 (280)
.+..|++..++++.+.+..-.+..|.. ++||++..+=.. ++-++-..+.... .+ +. ..+++ .++-.+.|+
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~~-~~-~~---~~~k~-~~~nil~G~ 203 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQA-IGMLIGAFIFNLF-SK-KP---FFEKK-SWKNILTGL 203 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHH-HHHHHHHHHHhhc-cc-cc---ccccc-hHHhhHHHH
Confidence 445779999999999998888888874 378887776443 3333322222221 21 11 12222 333445565
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 89 TGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 89 ~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+-. ..+.+++.+.+....+.+-.+-++.+++..+.+.+++|||-++|
T Consensus 204 ~w~-ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 204 IWG-IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred HHH-HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 543 77889999999999999999999999999999999999998776
No 66
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.06 E-value=0.0024 Score=54.35 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHH
Q 041987 153 DRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIF 232 (280)
Q Consensus 153 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 232 (280)
+....|..+.-++ ..+....++.++..+. +|.+......++--++..|..+..-.+ -+.....+.|+ +.=|+-
T Consensus 34 d~p~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g~R~~L--iLRg~m 106 (346)
T KOG4510|consen 34 DKPNLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP--VIGPEGKRKWL--ILRGFM 106 (346)
T ss_pred CCCccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee--eecCCCcEEEE--Eeehhh
Confidence 3557788888888 7777888888887665 366666555444444444433322111 11111112222 112222
Q ss_pred HHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 233 GSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 233 ~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
++ .+....+++.++.+-+.+.++.+..|+++++++|.+|+|+.|.
T Consensus 107 G~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~ 151 (346)
T KOG4510|consen 107 GF-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK 151 (346)
T ss_pred hh-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH
Confidence 22 3446667799999999999999999999999999999999874
No 67
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.11 Score=45.69 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=75.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHH
Q 041987 7 QMEEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFL 86 (280)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (280)
...++..+....+.+.++.|+++..-|..... . ... ...- +.+.. +.. +..+++ .
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~----------~~~-------~~ra-~~gg~--~yl-~~~~Ww---~ 69 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKR-A----------GAS-------GLRA-GEGGY--GYL-KEPLWW---A 69 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHH-H----------hhh-------cccc-cCCCc--chh-hhHHHH---H
Confidence 34566788888999999999999999987643 1 000 0000 11111 122 222333 3
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 87 GLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 87 gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
|.+....+....|.|..+-+++..+-+-++.-+..++++..++|||++.+
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~ 119 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL 119 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 55555677888899999999999999999999999999999999999999
No 68
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.0034 Score=52.78 Aligned_cols=243 Identities=14% Similarity=0.092 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 041987 13 VPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVA 92 (280)
Q Consensus 13 ~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~ 92 (280)
..++..++-++.||+.+.....- |=+|.+=..---+-|.++-+.+ ++. .+ |..+.+.+..-.+.|++= .
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv-~~~-~~-----p~~T~~~~iv~~isG~~W-s 70 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIV-FLF-VS-----PELTLTIFIVGFISGAFW-S 70 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHH-hee-ec-----CccchhhHHHHHHhhhHh-h
Confidence 35678889999999998776543 3466665544444444433333 322 22 456666665555555543 4
Q ss_pred HHHHHHHHHhhccchhHHHHhhh-hhHHHHHHHHHHhhccccCCc----ce-e--ee--CC-----CCC--CCCCCCchh
Q 041987 93 ISQNLAFFGLYYSSPIVVCVMGL-LIPAISFLLSIITRKAASDDK----LE-A--KI--NP-----PLL--IFYSTPDRW 155 (280)
Q Consensus 93 ~~~~~~~~~l~~~~~~~a~vi~~-~~P~~~~il~~i~~~ek~~~~----g~-~--ii--~~-----~~~--~~~~~~~~~ 155 (280)
+.|...+.|.++.+++.+--+-. .+-+-+.+++.+.++|=.+.. |. | ++ +. .+. ...++.++.
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~ 150 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNL 150 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhh
Confidence 67888999999999998877664 455667788888898877655 33 1 11 11 111 123344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhh-HHHHHHHHHHHHH
Q 041987 156 VLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNM-ELLLIIITAIFGS 234 (280)
Q Consensus 156 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~t 234 (280)
..|....+.+.+.|-.|.++.+...-+.-+..--.+..|..+++.+. . ... + ...++ .|.. ..-|+. =
T Consensus 151 kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~---~-~~~---~--~~~~K~t~~n-ii~G~~-W 219 (288)
T COG4975 151 KKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILG---F-FKM---E--KRFNKYTWLN-IIPGLI-W 219 (288)
T ss_pred hhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHh---h-ccc---c--cchHHHHHHH-HhhHHH-H
Confidence 78999999999999999998776532211133334444555554322 1 111 0 11111 1222 223332 2
Q ss_pred HHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccc
Q 041987 235 VIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLH 277 (280)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it 277 (280)
+++...+..+.++.|..+.=.++-+..+.+.+=+.++++|+=|
T Consensus 220 a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt 262 (288)
T COG4975 220 AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT 262 (288)
T ss_pred HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence 3566777778888888887777888888899999999999744
No 69
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.79 E-value=0.13 Score=37.05 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhccCccee-ccccchHHHHHHHHHHHHhcCccccCC
Q 041987 231 IFGSVIRSTVHVSCAEMKGHLYV-PMFKPFGIVFATAFGLTFFTNSLHYGR 280 (280)
Q Consensus 231 ~~~t~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~~l~~~~l~E~it~~~ 280 (280)
+.+-++++.++.+++|+.+.+.+ ++..-+..+...+.+++++||++|+.+
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~ 86 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK 86 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33566889999999999999887 445568889999999999999999764
No 70
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=94.51 E-value=0.68 Score=40.83 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHhh--hccc-CCCC-CCCCCHHHHHHHHHHHH
Q 041987 14 PFTLMVIMEGCTIGLTIVTKTAM-NGGMSPFVFIAYTNALGSILLLPYSFF--FHHR-GSEA-QPLFTLPLMLRFFFLGL 88 (280)
Q Consensus 14 ~~l~~~~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~gl 88 (280)
|+..++++.++=|...+.-+..+ +++.++.+..++-...+.+.+++.... . +. .+.. .....+..+..+....+
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~-~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPT-GEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999998887 556999999999999999998887766 2 11 1000 00111223455555555
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 89 TGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 89 ~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
.+. ..+.+.+.-.+..++-..+++..+--+.+.+++.++++|+++..
T Consensus 234 ~~~-~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~ 280 (303)
T PF08449_consen 234 TGA-LGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL 280 (303)
T ss_pred HHH-HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH
Confidence 554 67778888899999999999999999999999999998877544
No 71
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=93.22 E-value=0.27 Score=35.33 Aligned_cols=49 Identities=12% Similarity=-0.057 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHhhccccCCc
Q 041987 88 LTGVAISQNLAFFGLYYSSPIVVCVM-GLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 88 l~g~~~~~~~~~~~l~~~~~~~a~vi-~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+.+.....+++..++++.|.+.+-.+ .....+.+.+.+.++++|+++..
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~ 85 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS 85 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33445678899999999999999555 46889999999999999999876
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=93.16 E-value=0.99 Score=35.01 Aligned_cols=108 Identities=10% Similarity=-0.013 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 041987 159 STLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRS 238 (280)
Q Consensus 159 ~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 238 (280)
.++++.+...-+.-...+.++.++.++|...+...+..|.+....+..+.++. +........|+... -|+++ +.--
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~lG-~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLLG-VFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHHH-HHHH
Confidence 46788888888999999999888876799999999999999988877766542 22211112233222 45544 4555
Q ss_pred HHHHhhhhccCcceecc-ccchHHHHHHHHHHH
Q 041987 239 TVHVSCAEMKGHLYVPM-FKPFGIVFATAFGLT 270 (280)
Q Consensus 239 ~~~~~a~~~~~~~~~s~-~~~l~pv~a~~l~~~ 270 (280)
......+++.|++.+.. ...-|-+.+.+++.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f 111 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHF 111 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 66777889999886544 344556666666654
No 73
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=92.16 E-value=0.54 Score=41.56 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-chHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHH
Q 041987 153 DRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQ-VMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAI 231 (280)
Q Consensus 153 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 231 (280)
.++..|..+++.++++.+...+++|+...+.++ +.... .. +... + ..+.+|..+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~--------~~~~--------l--~~~~W~~G~----- 57 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SG--------GRSY--------L--RRPLWWIGL----- 57 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ch--------hhHH--------H--hhHHHHHHH-----
Confidence 456789999999999999999999987665431 00000 00 0000 0 011122222
Q ss_pred HHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccccC
Q 041987 232 FGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 232 ~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
...+++......++...+++.++++..+.-++..+++..++||+++..
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~ 105 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR 105 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh
Confidence 223345556667888889999999999999999999999999999853
No 74
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.72 E-value=5.9 Score=30.67 Aligned_cols=105 Identities=16% Similarity=0.087 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041987 17 LMVIMEGCTIGLTIVTKTAMNGGM-SPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQ 95 (280)
Q Consensus 17 ~~~~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~ 95 (280)
..+++..+-+....+--..-+. . +|+...+.-+..+.+.+..+.... +++.. ++.+..+|+ ...-|++|. ..-
T Consensus 5 la~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~-~~~~~--~~~~~~p~w-~~lGG~lG~-~~V 78 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLIT-GRPSL--ASLSSVPWW-AYLGGLLGV-FFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHh-ccccc--chhccCChH-HhccHHHHH-HHH
Confidence 3344444444444443333343 4 599999999999999998888776 44322 222222233 333778885 677
Q ss_pred HHHHHHhhccchhHHHHhhhh-hHHHHHHHHHH
Q 041987 96 NLAFFGLYYSSPIVVCVMGLL-IPAISFLLSII 127 (280)
Q Consensus 96 ~~~~~~l~~~~~~~a~vi~~~-~P~~~~il~~i 127 (280)
.+..+.....+++.+..+.-+ +-+...+++.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f 111 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHF 111 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 788888999998888777643 34444555543
No 75
>PRK13499 rhamnose-proton symporter; Provisional
Probab=90.47 E-value=11 Score=34.11 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=67.0
Q ss_pred cchhhHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHH-HHHHhhhcccCCCC----CC
Q 041987 9 EEEMVPFTLMVIMEGCTIGLT-------IVTKTAMNGGMSPFVFIAYTNA---LGSILL-LPYSFFFHHRGSEA----QP 73 (280)
Q Consensus 9 ~~~~~~~l~~~~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~l~l-~~~~~~~~~~~~~~----~~ 73 (280)
.+..|++..++++.+..+... +.-+.+.+.|.+|.....--+. ++..+. +.++.+.++|++.. .+
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~ 249 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF 249 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence 345789999999999888877 6666665667888776666665 443333 23333210121110 01
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHhhccchhHHHH---hh-hhhHHHHHHHHHHhhccccC
Q 041987 74 LFTLPLMLRF----FFLGLTGVAISQNLAFFGLYYSSPIVVCV---MG-LLIPAISFLLSIITRKAASD 134 (280)
Q Consensus 74 ~~~~~~~~~~----~~~gl~g~~~~~~~~~~~l~~~~~~~a~v---i~-~~~P~~~~il~~i~~~ek~~ 134 (280)
+-+++.+.+- .+.|++= .+.+.++..|-+..+.+.+.+ +. ++..++..+.+. ++||+-+
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~ 316 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKG 316 (345)
T ss_pred cccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccC
Confidence 1122223333 3334333 245556666666665444443 44 344455555555 6899875
No 76
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=89.79 E-value=0.64 Score=41.26 Aligned_cols=103 Identities=8% Similarity=0.101 Sum_probs=74.8
Q ss_pred HHHHHhhhh--cCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccCc
Q 041987 173 NIIQVGTIK--QYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIRSTVHVSCAEMKGH 250 (280)
Q Consensus 173 ~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~~~~~ 250 (280)
++++|+..+ +.+.|...+..+..++.+.....-.+...+ ..+..++..+..++-+|++. .++..+-+.++++.+.
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~--~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~V 109 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVP--PSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPV 109 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCC--CCccccccchHHHHHHHHHH-HHHHHhcchhhhccch
Confidence 356788877 555677788777767776665554432222 11121223466667777754 4788888999999999
Q ss_pred ceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 251 LYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 251 ~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
+..=....++|+++.++++++.+|+.+.
T Consensus 110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~ 137 (316)
T KOG1441|consen 110 SFYQTIKALMPPFTVLLSVLLLGKTYSS 137 (316)
T ss_pred hHHHHHHhhcchhHHHHHHHHhCCCCcc
Confidence 9999999999999999999999998765
No 77
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=88.36 E-value=0.66 Score=34.50 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhhccCcceecc-ccchHHHHHHHHHHHHhcCccccC
Q 041987 231 IFGSVIRSTVHVSCAEMKGHLYVPM-FKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 231 ~~~t~~~~~~~~~a~~~~~~~~~s~-~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+.+-++++.++.+++|+.+...+=. ..-+.-+.+.+++++++||++|+.
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~ 86 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4455678888888888887775422 234567778899999999999874
No 78
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=87.76 E-value=0.77 Score=34.72 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhhhccCcceeccc-cchHHHHHHHHHHHHhcCccccC
Q 041987 231 IFGSVIRSTVHVSCAEMKGHLYVPMF-KPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 231 ~~~t~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+..-+++++++.+++|+.+...+=.. .-+--+...+++++++||++|+.
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~ 86 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM 86 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556889999999999988765333 34677888999999999999874
No 79
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=87.43 E-value=16 Score=31.83 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=112.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHhhhhhHHHHHHHHHHhhccccCCc----------ceeee
Q 041987 73 PLFTLPLMLRFFFLGLTGVAISQNLAFFGLYYS-SPIVVCVMGLLIPAISFLLSIITRKAASDDK----------LEAKI 141 (280)
Q Consensus 73 ~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~-~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~----------g~~ii 141 (280)
+|.+.|++.... ..+ +..+.+.++++++- +.-.=-++=.-.++-++++++++.|+|-+.+ |+.+.
T Consensus 60 ~kiplk~Y~i~V--~mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIc 135 (330)
T KOG1583|consen 60 PKIPLKDYAITV--AMF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIIC 135 (330)
T ss_pred CCCchhhhheeh--hee--eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeE
Confidence 677777655433 222 24566778888873 2222122224568889999999999999988 22111
Q ss_pred --CC-CCC----------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHHHHHHHh
Q 041987 142 --NP-PLL----------IFYSTPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYP-QVMKVVSFYSLAGTIQCSIFSLI 207 (280)
Q Consensus 142 --~~-~~~----------~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 207 (280)
.. .+. +.+.....+..|+.+...|-+.-|...+.++..=++++ ++-+.+++.=+.+. |.-++
T Consensus 136 Tl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsL----P~Flf 211 (330)
T KOG1583|consen 136 TLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSL----PLFLF 211 (330)
T ss_pred EeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhcc----chHHH
Confidence 11 111 01112234568888888888888888888877766654 45567766543332 22222
Q ss_pred hcccc-c--------------ccccchhhHHHHHHHHHHHHHHHHHHHHHhhhh----ccCcceeccccchHHHHHHHHH
Q 041987 208 MERNI-N--------------AWKLKLNMELLLIIITAIFGSVIRSTVHVSCAE----MKGHLYVPMFKPFGIVFATAFG 268 (280)
Q Consensus 208 ~~~~~-~--------------~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~a~~----~~~~~~~s~~~~l~pv~a~~l~ 268 (280)
..+|. . ......+..|.+++ ...+.++.=.+++. +.++-.+++...+.-.++.+++
T Consensus 212 ~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl-----~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~S 286 (330)
T KOG1583|consen 212 MGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL-----FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFS 286 (330)
T ss_pred hcchHHHHHHHHhcCcceeccccCccccHHHHHHH-----HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhhe
Confidence 22210 0 01111223444433 33344444444443 4455567888889999999999
Q ss_pred HHHhcCcccc
Q 041987 269 LTFFTNSLHY 278 (280)
Q Consensus 269 ~~~l~E~it~ 278 (280)
.+.+++++|+
T Consensus 287 iiyF~Npft~ 296 (330)
T KOG1583|consen 287 IIYFENPFTP 296 (330)
T ss_pred eeEecCCCCH
Confidence 9999999886
No 80
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=86.87 E-value=2.8 Score=31.29 Aligned_cols=95 Identities=8% Similarity=-0.008 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 041987 19 VIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEAQPLFTLPLMLRFFFLGLTGVAISQNLA 98 (280)
Q Consensus 19 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~ 98 (280)
+++.++||.+.+++|.+.+. .++..-.. |..-.... .+ .+++.... . ++.. .....|
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll-----------~n~~y~ip---f-~lNq-~GSv~f 58 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LL-----------LNPKYIIP---F-LLNQ-SGSVLF 58 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HH-----------HhHHHHHH---H-HHHH-HHHHHH
Confidence 45788999999999999865 55555441 31111111 11 12222211 1 1222 456788
Q ss_pred HHHhhccchhHHHHhh-hhhHHHHHHHHHHhhccccCCc
Q 041987 99 FFGLYYSSPIVVCVMG-LLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 99 ~~~l~~~~~~~a~vi~-~~~P~~~~il~~i~~~ek~~~~ 136 (280)
++.+...+.+.+.-+. ++.=++|++.++++.+|..+++
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~ 97 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR 97 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh
Confidence 9999999999999997 5666788888877766665554
No 81
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=86.82 E-value=3.4 Score=30.67 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhhhccCccee-ccccchHHHHHHHHHHHHhcCccccC
Q 041987 231 IFGSVIRSTVHVSCAEMKGHLYV-PMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 231 ~~~t~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+.+-+++|++..+++|+.|...+ ++..-+--+.+.+.+++++||++|+.
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~ 91 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK 91 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 33556888999999999887753 44445666778889999999999874
No 82
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=86.48 E-value=2.2 Score=32.25 Aligned_cols=50 Identities=12% Similarity=-0.061 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHHHHHhhccccCCc
Q 041987 87 GLTGVAISQNLAFFGLYYSSPIVVCVMG-LLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 87 gl~g~~~~~~~~~~~l~~~~~~~a~vi~-~~~P~~~~il~~i~~~ek~~~~ 136 (280)
.+.++...++++..++++.+.+.+-.+- ...-+.+++++.++++|+++..
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~ 86 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM 86 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4455567889999999999999888775 5778889999999999999988
No 83
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=85.58 E-value=3.8 Score=30.43 Aligned_cols=50 Identities=16% Similarity=-0.138 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHHHHHhhccccCCc
Q 041987 87 GLTGVAISQNLAFFGLYYSSPIVVCVMG-LLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 87 gl~g~~~~~~~~~~~l~~~~~~~a~vi~-~~~P~~~~il~~i~~~ek~~~~ 136 (280)
.+.+..+.++++..+++..|.+.+-.+- ...-..+.+++++++||+++..
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~ 86 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455567788899999999999887774 4677888999999999999987
No 84
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.72 E-value=23 Score=31.39 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=94.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHhhhccc----CCCCCCCCCHHHHHHHHH
Q 041987 11 EMVPFTLMVIMEGCTIGLTIVTKTAMNG-GMSPFVFIAYTNALGSILLLPYSFFFHHR----GSEAQPLFTLPLMLRFFF 85 (280)
Q Consensus 11 ~~~~~l~~~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 85 (280)
+..|+.++....+.=+...+..|...+. +.+-+..+++-.+.+.+.+....+.. +. ....++-.+...+..+.+
T Consensus 155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~-ge~~~l~~~~~~~~~~~~~~~~~l 233 (314)
T KOG1444|consen 155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFIT-GELDALSLNFDNWSDSSVLVVMLL 233 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHh-cchHHHHhhcccccchhHHHHHHH
Confidence 3457788888888878888888877643 37778899999999999887776554 32 111001122334667777
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCcceeeeCCCCCCCCCCCchhHHHHHHHHHH
Q 041987 86 LGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDKLEAKINPPLLIFYSTPDRWVLGSTLLAAS 165 (280)
Q Consensus 86 ~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~g~~ii~~~~~~~~~~~~~~~~G~~~~l~a 165 (280)
.|++|. .-.++-++..+++++...++....+=+.+.+...++.+++. ......|..+.+++
T Consensus 234 Scv~gf-~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~------------------~~~n~~gll~~~~g 294 (314)
T KOG1444|consen 234 SCVMGF-GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPF------------------TFLNVIGLLVGFFG 294 (314)
T ss_pred HHHHHH-HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCcee------------------chhhhHHHHHHhhh
Confidence 788886 45578888999999888888775455555554444444443 22345677777777
Q ss_pred HHHHHHHHH
Q 041987 166 SLSVCVWNI 174 (280)
Q Consensus 166 a~~~a~~~v 174 (280)
+.-|+.-.-
T Consensus 295 gv~Y~~~~~ 303 (314)
T KOG1444|consen 295 GVLYSYATF 303 (314)
T ss_pred hhHHhhhhh
Confidence 777776443
No 85
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=81.20 E-value=8.4 Score=34.89 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=84.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHhhhccc--CCCCCCCCCHHHHHHHHH
Q 041987 11 EMVPFTLMVIMEGCTIGLTIVTKTAMNGG---MSPFVFIAYTNALGSILLLPYSFFFHHR--GSEAQPLFTLPLMLRFFF 85 (280)
Q Consensus 11 ~~~~~l~~~~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 85 (280)
...|.++.+++++.+|.-.++.|.=.++. +|--.+-.+=-+...++++|..+.. ++ ..++ +-.+..+...+.+
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL-~~~~~e~F-~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL-DFFGEERF-ELPSSTQFSLVVF 322 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH-HHhccCcc-cCCCCceeEeeeH
Confidence 35789999999999999999999876432 4544455555566666677654432 11 1111 2233344566777
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhh-hhHHHHHHHHHHhhccccCCc
Q 041987 86 LGLTGVAISQNLAFFGLYYSSPIVVCVMGL-LIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 86 ~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~-~~P~~~~il~~i~~~ek~~~~ 136 (280)
.|+++.+..-++|.+|.-.|++-.+++=.. +.|+ .++...++.+++++..
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~S~~ 373 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHPSAL 373 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCCCHH
Confidence 889999999999999999999987777665 4454 3566666767777766
No 86
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=80.99 E-value=5.8 Score=29.21 Aligned_cols=49 Identities=12% Similarity=-0.054 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHHHHHhhccccCCc
Q 041987 88 LTGVAISQNLAFFGLYYSSPIVVCVMG-LLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 88 l~g~~~~~~~~~~~l~~~~~~~a~vi~-~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+++....+.+.-.++|++|.+.+-.+- ..--.-+++.++++++||.+..
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~ 86 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI 86 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH
Confidence 344456788899999999998886665 4667889999999999999987
No 87
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=80.72 E-value=21 Score=26.48 Aligned_cols=49 Identities=12% Similarity=-0.111 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHHHHHhhccccCCc
Q 041987 88 LTGVAISQNLAFFGLYYSSPIVVCVMG-LLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 88 l~g~~~~~~~~~~~l~~~~~~~a~vi~-~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+.+.....++.-.++|+.|.+.+-.+- ...-+.+.+++.+++||+++..
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~ 91 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK 91 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 344456788899999999998886665 4667888999999999999977
No 88
>PRK11431 multidrug efflux system protein; Provisional
Probab=80.33 E-value=2.5 Score=31.13 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhhhccCccee-ccccchHHHHHHHHHHHHhcCccccC
Q 041987 231 IFGSVIRSTVHVSCAEMKGHLYV-PMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 231 ~~~t~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+.+-+++|++..+++|+.|...+ ++..-+--+.+.+.+++++||++|+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~ 85 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA 85 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33556788888888888877653 44444667778899999999999874
No 89
>PRK11431 multidrug efflux system protein; Provisional
Probab=79.84 E-value=8.5 Score=28.29 Aligned_cols=49 Identities=8% Similarity=0.002 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhhh-hhHHHHHHHHHHhhccccCCc
Q 041987 88 LTGVAISQNLAFFGLYYSSPIVVCVMGL-LIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 88 l~g~~~~~~~~~~~l~~~~~~~a~vi~~-~~P~~~~il~~i~~~ek~~~~ 136 (280)
+.+....+++.-.+++..|.+.+-.+-. ..-..+.+++.+++|||++..
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~ 85 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA 85 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4445578889999999999988866664 777888999999999999987
No 90
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=78.86 E-value=3.8 Score=30.14 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhccCccee-ccccchHHHHHHHHHHHHhcCccccC
Q 041987 233 GSVIRSTVHVSCAEMKGHLYV-PMFKPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 233 ~t~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
+-.++|.+..+++|+.+...+ ++-.-+-.+.+.+.+++++||+++..
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~ 86 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI 86 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH
Confidence 445778888888888776642 44455666777888999999998753
No 91
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.92 E-value=18 Score=28.38 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHH
Q 041987 156 VLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSV 235 (280)
Q Consensus 156 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 235 (280)
....+..+.+..+-..-.-.+.++.+..++|.......+.+|++.+..+.++.++.. .+.......|+. ..-|+++..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~-~~GG~lGa~ 81 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWA-WIGGLLGAI 81 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHH-HHccchhhh
Confidence 345677788888888888888888887777888899999999999888877644321 222112212332 223343332
Q ss_pred HHHHHHHhhhhccCcce-eccccchHHHHHHHHHHH
Q 041987 236 IRSTVHVSCAEMKGHLY-VPMFKPFGIVFATAFGLT 270 (280)
Q Consensus 236 ~~~~~~~~a~~~~~~~~-~s~~~~l~pv~a~~l~~~ 270 (280)
. -+.-....+|+|++. +.....-|-+.+.+++-+
T Consensus 82 ~-vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~f 116 (150)
T COG3238 82 F-VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHF 116 (150)
T ss_pred h-hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 233344556666663 344444455555555543
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=73.38 E-value=2 Score=36.52 Aligned_cols=111 Identities=9% Similarity=0.040 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHH
Q 041987 158 GSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITAIFGSVIR 237 (280)
Q Consensus 158 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 237 (280)
+.+.+++-++.|...-....|.-. +|.+.+ ..+..|++....+.+++..+ ..+...++.-+..|.+= .++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~-lGtT~GALifaiiv~~~~~p-----~~T~~~~iv~~isG~~W-s~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQT-LGTTLGALIFAIIVFLFVSP-----ELTLTIFIVGFISGAFW-SFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhh-hhccHHHHHHHHHHheeecC-----ccchhhHHHHHHhhhHh-hhh
Confidence 457888899999988766544322 253333 44556776666655544222 11222344444455543 378
Q ss_pred HHHHHhhhhccCcceeccccc-hHHHHHHHHHHHHhcCcccc
Q 041987 238 STVHVSCAEMKGHLYVPMFKP-FGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 238 ~~~~~~a~~~~~~~~~s~~~~-l~pv~a~~l~~~~l~E~it~ 278 (280)
+..++++++..|.+++.+... .|-|-+.+++++.+||=-+.
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~ 114 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTP 114 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcc
Confidence 999999999999999988775 67888899999999996554
No 93
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=71.82 E-value=47 Score=27.53 Aligned_cols=45 Identities=13% Similarity=-0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 92 AISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
...+.+..+-++|.++..-+....+.++++.+++.++++|+++..
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~ 207 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST 207 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 356678899999999999999999999999999999999999876
No 94
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.52 E-value=5.8 Score=35.09 Aligned_cols=104 Identities=11% Similarity=0.131 Sum_probs=68.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHH
Q 041987 151 TPDRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLIMERNINAWKLKLNMELLLIIITA 230 (280)
Q Consensus 151 ~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 230 (280)
...++..|..+++.+.+..+...++.||..++.. . ...+ ..+++.... ....+| .|
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r-------------a~~gg~~yl--~~~~Ww-----~G 70 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR-------------AGEGGYGYL--KEPLWW-----AG 70 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc-------------ccCCCcchh--hhHHHH-----HH
Confidence 3456678999999999999999998887666543 1 0000 111111111 111123 33
Q ss_pred HHHHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCcccc
Q 041987 231 IFGSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLHY 278 (280)
Q Consensus 231 ~~~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it~ 278 (280)
++..+++-..-+-+....+++.++++..+..+.+++++..+++|++++
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~ 118 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNL 118 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666888899999999999999999999999875
No 95
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=53.03 E-value=1.4e+02 Score=25.34 Aligned_cols=120 Identities=11% Similarity=-0.022 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHh-hhcccCCC----CCCCCCHHHHHHHHH
Q 041987 11 EMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSF-FFHHRGSE----AQPLFTLPLMLRFFF 85 (280)
Q Consensus 11 ~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~ 85 (280)
...|++..+.+.++-|...+.....++++-.|...--...-.-++++..+.. .. .++.. +..-.++..|...
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~~~~g~f~G~~~~~~~~i-- 188 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAISESGFFHGYSWWVWIVI-- 188 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-cccccccCCchhhcchHHHHHH--
Confidence 3568888999999999999999888876544544444444444443333333 22 22111 0011122222221
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 86 LGLTGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 86 ~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+.......+.-.-+||.+...=..-....-+.+.+++..+++.+++..
T Consensus 189 ---~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~ 236 (244)
T PF04142_consen 189 ---FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS 236 (244)
T ss_pred ---HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 222334455566789988877777777788899999999999988765
No 96
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.40 E-value=1.9e+02 Score=23.85 Aligned_cols=11 Identities=9% Similarity=-0.194 Sum_probs=6.1
Q ss_pred HHhhccccCCc
Q 041987 126 IITRKAASDDK 136 (280)
Q Consensus 126 ~i~~~ek~~~~ 136 (280)
...+|+|.+.+
T Consensus 194 ~~~lkkk~~i~ 204 (206)
T PF06570_consen 194 RFYLKKKYNIT 204 (206)
T ss_pred HHHHHHHhCCC
Confidence 34566666654
No 97
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=42.03 E-value=1.8e+02 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=16.0
Q ss_pred HHHHhhhhhHH-HHHHHHHHhhccccCCc
Q 041987 109 VVCVMGLLIPA-ISFLLSIITRKAASDDK 136 (280)
Q Consensus 109 ~a~vi~~~~P~-~~~il~~i~~~ek~~~~ 136 (280)
+.....+..|+ ..+++...+.++|....
T Consensus 59 ~~~~~~~~~P~a~~~~l~~~l~~~~~ai~ 87 (194)
T PF07698_consen 59 DISYFPYLIPVAAAAMLLTILIDPRLAIL 87 (194)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcchHHHH
Confidence 44455556664 45555566777776443
No 98
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.33 E-value=91 Score=25.71 Aligned_cols=20 Identities=0% Similarity=-0.187 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041987 14 PFTLMVIMEGCTIGLTIVTK 33 (280)
Q Consensus 14 ~~l~~~~~~~~wg~~~~~~k 33 (280)
++...++..++.|.......
T Consensus 112 gi~tli~~~i~~G~~~~~~~ 131 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIF 131 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555544443
No 99
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=35.85 E-value=28 Score=28.79 Aligned_cols=41 Identities=2% Similarity=-0.009 Sum_probs=37.3
Q ss_pred HHHHHHhhhhccCcceeccccchHHHHHHHHHHHHhcCccc
Q 041987 237 RSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTFFTNSLH 277 (280)
Q Consensus 237 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~l~E~it 277 (280)
+.+.|..++++++|+.++.+..-.--+-.++++++++|++.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~ 106 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFM 106 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchh
Confidence 45788899999999999999999999999999999999875
No 100
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=35.36 E-value=1.2e+02 Score=26.23 Aligned_cols=56 Identities=7% Similarity=0.007 Sum_probs=42.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-------CChHHHHHHHH----HHHHHHHHHHHhhh
Q 041987 9 EEEMVPFTLMVIMEGCTIGLTIVTKTAMNGG-------MSPFVFIAYTN----ALGSILLLPYSFFF 64 (280)
Q Consensus 9 ~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~-------~~p~~~~~~R~----~~a~l~l~~~~~~~ 64 (280)
++|..+....+++.+++|++++-.++..+++ -++++.++-.+ +.+.+.+..++..+
T Consensus 179 ~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~ 245 (254)
T PF07857_consen 179 KKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIK 245 (254)
T ss_pred cchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhh
Confidence 3567799999999999999999999998763 25566566655 55666677777665
No 101
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=31.59 E-value=46 Score=28.40 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCCC--CCCCCHHHHHHHHHHHH
Q 041987 14 PFTLMVIMEGCTIGLTIV---TKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSEA--QPLFTLPLMLRFFFLGL 88 (280)
Q Consensus 14 ~~l~~~~~~~~wg~~~~~---~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gl 88 (280)
+-+.++++...=|.+... +|-+++. +..+..++-.+-+.+.+..-..+. +.-..+ .....+..|+-+..+++
T Consensus 173 GElLL~lSL~mDGlTg~~Qdrira~yq~--~g~~MM~~~NlwStL~Lg~g~lfT-GElweF~yF~~RhP~~~~~l~l~ai 249 (337)
T KOG1580|consen 173 GELLLILSLAMDGLTGSIQDRIRASYQR--TGTSMMFYTNLWSTLYLGAGLLFT-GELWEFFYFVQRHPYVFWDLTLLAI 249 (337)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHhhcc--CchhhHHHHHHHHHHHhhhhheeh-hhHHHHHHHHHhccHHHHHHHHHHH
Confidence 455555555544544443 3333332 344455555555555554332222 110000 00011223566777777
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 89 TGVAISQNLAFFGLYYSSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 89 ~g~~~~~~~~~~~l~~~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
.+. +.|+|-|.-+.+-++-.-+++..+--+||.+++.+++++.++.+
T Consensus 250 ~s~-LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r 296 (337)
T KOG1580|consen 250 ASC-LGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR 296 (337)
T ss_pred HHH-hhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH
Confidence 775 88999999999988888888888889999999999999888666
No 102
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=31.42 E-value=3.3e+02 Score=23.20 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhcccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhh
Q 041987 40 MSPFVFIAYTNALGSILLLPYSFFFHHRGSE--AQPLFTLPLMLRFFFLGLTGVAISQNLAFFGLYYSSPIVVCVMGLLI 117 (280)
Q Consensus 40 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~~l~~~~~~~a~vi~~~~ 117 (280)
..-.+-.++..+++.+++..+.... +.... .....+.-...+..+.|+..+ .-.++--+.++.+++..-+...+++
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~-edws~~n~annl~~d~l~am~ISgl~sv-giSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLF-EDWSPGNLANNLSVDSLMAMFISGLCSV-GISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHh-ccCCcchhhcCCChHHHHHHHHHHHHHh-hhhhccceeEeehhhhHHHHHHHhh
Confidence 5667889999999999999888765 33110 001122222446777777765 4567888899999999888888888
Q ss_pred HHHHHHHHHHhhccccCCcceeeeCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 041987 118 PAISFLLSIITRKAASDDKLEAKINPPLLIFYSTPDRWVLGSTLLAASSLSVCVW 172 (280)
Q Consensus 118 P~~~~il~~i~~~ek~~~~g~~ii~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~ 172 (280)
-.-.++.+.++++|+.+. .....+++..+++..||..
T Consensus 261 Klp~alaGlvffdap~nf------------------~si~sillGflsg~iYava 297 (309)
T COG5070 261 KLPIALAGLVFFDAPVNF------------------LSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred hChHHHhhhhhcCCchhH------------------HHHHHHHHHHHHHHHHHHH
Confidence 777777777777665522 2234556667777666653
No 103
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=26.48 E-value=3.3e+02 Score=24.58 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=63.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHH--hhcccccc-cccchhhHHHHHHHH
Q 041987 153 DRWVLGSTLLAASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSL--IMERNINA-WKLKLNMELLLIIIT 229 (280)
Q Consensus 153 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~ 229 (280)
+....|.++..+++++-+.+.+-.||. |+. +.+.......+-+-+..|... +.-++..+ ....+...+....+.
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~W--sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGW--SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCc--cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 345789999999999999999988875 443 344443333333333344433 11122111 111122234444555
Q ss_pred HHHHHHHHHHHHHhhhhccCcce-eccccchHHHHHHHHHHHH
Q 041987 230 AIFGSVIRSTVHVSCAEMKGHLY-VPMFKPFGIVFATAFGLTF 271 (280)
Q Consensus 230 g~~~t~~~~~~~~~a~~~~~~~~-~s~~~~l~pv~a~~l~~~~ 271 (280)
|+.= .++-..|-.++||+|.+. .|+..-+.-+++.++--++
T Consensus 80 G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~ 121 (344)
T PF06379_consen 80 GVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIF 121 (344)
T ss_pred HHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHH
Confidence 5532 356688888999999874 3333334444444443333
No 104
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.23 E-value=3.4e+02 Score=21.35 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 041987 13 VPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFF 64 (280)
Q Consensus 13 ~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~ 64 (280)
...+..+.+..+-......--...+..-+|....+.-+..+...+..+....
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~ 56 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK 56 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444333333333323699999999999999888887765
No 105
>PF12832 MFS_1_like: MFS_1 like family
Probab=24.45 E-value=1.5e+02 Score=20.08 Aligned_cols=16 Identities=6% Similarity=-0.166 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhhcc
Q 041987 233 GSVIRSTVHVSCAEMK 248 (280)
Q Consensus 233 ~t~~~~~~~~~a~~~~ 248 (280)
...++-.+|..-.+|.
T Consensus 47 ~~~~~~pl~g~laDk~ 62 (77)
T PF12832_consen 47 IRFLAPPLWGFLADKF 62 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 106
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=21.84 E-value=2.8e+02 Score=22.79 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 041987 5 RGQMEEEMVPFTLMVIMEGCTIGLTIVTKTAMNGGMSPFVFIAYTNALGSILLLPYSFFFHHRGSE 70 (280)
Q Consensus 5 ~g~~~~~~~~~l~~~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~ 70 (280)
+|+.-..+|..+...+++++|=...++.-..=.+ ++|..--..-.+++.+++..-.+.+ +|...
T Consensus 155 ~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPts-lN~~L~pi~l~IiGav~lalRfylk-kk~NI 218 (226)
T COG4858 155 NSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTS-LNPQLPPIALTIIGAVILALRFYLK-KKKNI 218 (226)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCc-CCcCCchHHHHHHHHHHHHHHHHHH-Hhhcc
No 107
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.50 E-value=1.9e+02 Score=16.75 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041987 158 GSTLLAASSLSVCVWNIIQ 176 (280)
Q Consensus 158 G~~~~l~aa~~~a~~~v~~ 176 (280)
=.+..++.+.+|+.|++..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3577889999999999954
Done!