Query 041987
Match_columns 280
No_of_seqs 111 out of 1272
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 22:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.0 6E-06 2.1E-10 63.0 4.1 53 228-280 34-87 (137)
2 3b5d_A Multidrug transporter E 97.4 0.00012 4E-09 53.7 3.8 51 229-279 35-86 (110)
3 2i68_A Protein EMRE; transmemb 96.9 0.0012 4.2E-08 50.1 5.2 52 85-136 34-86 (137)
4 3b5d_A Multidrug transporter E 96.9 0.0021 7.2E-08 46.9 6.2 52 85-136 34-86 (110)
5 1pw4_A Glycerol-3-phosphate tr 7.8 9.2E+02 0.032 20.0 9.6 38 17-55 94-132 (451)
6 1pi7_A VPU protein, U ORF prot 5.2 4.9E+02 0.017 14.2 3.3 23 160-182 13-35 (36)
7 2hac_A T-cell surface glycopro 5.0 4E+02 0.014 14.3 1.7 13 123-135 18-30 (33)
8 2kse_A Sensor protein QSEC; me 4.1 7.7E+02 0.026 17.4 3.6 8 1-8 1-8 (186)
9 3tij_A NUPC family protein; me 3.7 1.2E+03 0.043 20.4 4.9 29 48-80 10-38 (424)
10 2ks1_B Epidermal growth factor 3.4 7.9E+02 0.027 14.0 3.1 32 105-136 10-41 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.95 E-value=6e-06 Score=63.02 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccCcceeccc-cchHHHHHHHHHHHHhcCccccCC
Q 041987 228 ITAIFGSVIRSTVHVSCAEMKGHLYVPMF-KPFGIVFATAFGLTFFTNSLHYGR 280 (280)
Q Consensus 228 ~~g~~~t~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~a~~l~~~~l~E~it~~~ 280 (280)
.+++++++++|++|++++|+.+++++..+ ..+.|+++.++|++++||++|+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~ 87 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA 87 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 35677889999999999999999999998 899999999999999999999764
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.40 E-value=0.00012 Score=53.68 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhhhccCcceeccc-cchHHHHHHHHHHHHhcCccccC
Q 041987 229 TAIFGSVIRSTVHVSCAEMKGHLYVPMF-KPFGIVFATAFGLTFFTNSLHYG 279 (280)
Q Consensus 229 ~g~~~t~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~a~~l~~~~l~E~it~~ 279 (280)
.++++.+++|.++.+++|+.|.+++... ..+.|+++.+++++++||++|+.
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~ 86 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH
Confidence 5566788999999999999999999888 89999999999999999999874
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.90 E-value=0.0012 Score=50.12 Aligned_cols=52 Identities=15% Similarity=-0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHhhccccCCc
Q 041987 85 FLGLTGVAISQNLAFFGLYYSSPIVVCVM-GLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 85 ~~gl~g~~~~~~~~~~~l~~~~~~~a~vi-~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+.++++..+.++++.+++++.+++.+..+ .++.|++++++++++++|+++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~ 86 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 45666677889999999999999999888 79999999999999999999766
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.89 E-value=0.0021 Score=46.88 Aligned_cols=52 Identities=15% Similarity=-0.132 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHhhccccCCc
Q 041987 85 FLGLTGVAISQNLAFFGLYYSSPIVVCVM-GLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 85 ~~gl~g~~~~~~~~~~~l~~~~~~~a~vi-~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
..++++....+.++..++++.|.+.+..+ ..+.|+++++++.+++|||++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~ 86 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH
Confidence 35556666788999999999999999888 68999999999999999999877
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=7.78 E-value=9.2e+02 Score=19.99 Aligned_cols=38 Identities=8% Similarity=-0.150 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHH
Q 041987 17 LMVIMEGCTIGLTIVTKTAMN-GGMSPFVFIAYTNALGSI 55 (280)
Q Consensus 17 ~~~~~~~~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l 55 (280)
.++.+.++++......-.... . -+...+...|++.+..
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWAT-SSIAVMFVLLFLCGWF 132 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHH-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHHH
Confidence 344555555555555443100 1 3566777889877654
No 6
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=5.21 E-value=4.9e+02 Score=14.23 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 041987 160 TLLAASSLSVCVWNIIQVGTIKQ 182 (280)
Q Consensus 160 ~~~l~aa~~~a~~~v~~~~~~~~ 182 (280)
...+.+...|.+-.+-.||..++
T Consensus 13 valIiaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 13 VAIIIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677888888887777776654
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.03 E-value=4e+02 Score=14.30 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=7.6
Q ss_pred HHHHHhhccccCC
Q 041987 123 LLSIITRKAASDD 135 (280)
Q Consensus 123 il~~i~~~ek~~~ 135 (280)
++..++.|||.+.
T Consensus 18 i~T~Ly~R~K~~~ 30 (33)
T 2hac_A 18 ILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhhc
Confidence 4455566777653
No 8
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=4.09 E-value=7.7e+02 Score=17.38 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=4.5
Q ss_pred CCcccccc
Q 041987 1 MGLVRGQM 8 (280)
Q Consensus 1 ~~~~~g~~ 8 (280)
||||+-.+
T Consensus 1 ~~~m~~~~ 8 (186)
T 2kse_A 1 MGKFTQRL 8 (186)
T ss_dssp CCSTTTCS
T ss_pred CCCCCCcc
Confidence 66666433
No 9
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=3.72 E-value=1.2e+03 Score=20.42 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCHHHH
Q 041987 48 YTNALGSILLLPYSFFFHHRGSEAQPLFTLPLM 80 (280)
Q Consensus 48 ~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
+|.+++.+.++.+++.. .++ | ++.+||..
T Consensus 10 l~sl~Gi~v~l~ia~l~-S~n-r--k~I~wr~V 38 (424)
T 3tij_A 10 FMSLIGMAVLLGIAVLL-SSN-R--KAINLRTV 38 (424)
T ss_dssp HHHHHHHHHHHHHHHHH-CSC-G--GGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCC-c--ccCChHHH
Confidence 55566666665555543 322 2 45666653
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=3.39 E-value=7.9e+02 Score=13.98 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=0.0
Q ss_pred cchhHHHHhhhhhHHHHHHHHHHhhccccCCc
Q 041987 105 SSPIVVCVMGLLIPAISFLLSIITRKAASDDK 136 (280)
Q Consensus 105 ~~~~~a~vi~~~~P~~~~il~~i~~~ek~~~~ 136 (280)
+++..+.++....-+....+.+.++.+|-+.+
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Done!