Query 041987
Match_columns 280
No_of_seqs 111 out of 1272
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 22:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.1 89 0.0065 14.4 2.7 18 156-173 2-19 (27)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 8.4 1.2E+02 0.009 14.1 2.3 10 126-135 20-29 (30)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 2.8 3.9E+02 0.029 13.1 2.7 22 152-173 14-35 (37)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 2.5 1.2E+03 0.085 17.9 21.0 42 164-207 289-330 (383)
5 d1v54b2 f.17.2.1 (B:1-90) Mito 1.9 7.9E+02 0.058 14.4 5.7 39 233-271 35-73 (90)
6 d1b0na1 a.34.1.1 (A:74-108) Si 1.8 5.6E+02 0.041 12.4 2.2 15 31-45 8-22 (35)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 1.8 8E+02 0.058 14.2 2.9 22 225-247 44-65 (75)
8 d1xioa_ f.13.1.1 (A:) Sensory 1.8 1.2E+03 0.085 16.0 10.9 16 115-130 78-93 (226)
9 d1w53a_ a.186.1.2 (A:) Phospho 1.7 7.8E+02 0.057 14.6 2.4 21 30-50 32-52 (84)
10 d3cx5h1 f.23.13.1 (H:2-94) Ubi 1.5 1E+03 0.074 14.4 2.9 20 227-247 56-75 (93)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.06 E-value=89 Score=14.38 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041987 156 VLGSTLLAASSLSVCVWN 173 (280)
Q Consensus 156 ~~G~~~~l~aa~~~a~~~ 173 (280)
..|.+..-++.+.||.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 367788888899888873
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.37 E-value=1.2e+02 Score=14.14 Aligned_cols=10 Identities=10% Similarity=-0.094 Sum_probs=5.8
Q ss_pred HHhhccccCC
Q 041987 126 IITRKAASDD 135 (280)
Q Consensus 126 ~i~~~ek~~~ 135 (280)
.++++|+++.
T Consensus 20 aiffreppri 29 (30)
T d2axtt1 20 AIFFREPPRI 29 (30)
T ss_dssp HHHTSCCCCC
T ss_pred HHHhcCCCCC
Confidence 3556776653
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.82 E-value=3.9e+02 Score=13.15 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=16.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 041987 152 PDRWVLGSTLLAASSLSVCVWN 173 (280)
Q Consensus 152 ~~~~~~G~~~~l~aa~~~a~~~ 173 (280)
.....+|.++.++-++-++.|.
T Consensus 14 rtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3455689888888888877764
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.47 E-value=1.2e+03 Score=17.91 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHh
Q 041987 164 ASSLSVCVWNIIQVGTIKQYPQVMKVVSFYSLAGTIQCSIFSLI 207 (280)
Q Consensus 164 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 207 (280)
.+.+++-.+..+.+|. +.||+......-...|..-.+...++
T Consensus 289 ~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 289 AGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHh
Confidence 3444444444444432 45567665555554444444444343
No 5
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.91 E-value=7.9e+02 Score=14.39 Aligned_cols=39 Identities=5% Similarity=0.017 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhccCcceeccccchHHHHHHHHHHHH
Q 041987 233 GSVIRSTVHVSCAEMKGHLYVPMFKPFGIVFATAFGLTF 271 (280)
Q Consensus 233 ~t~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~~l~~~~ 271 (280)
.+.+.|.+.....++.......=-..+|-+|+++=..+.
T Consensus 35 ~~~V~~~~~~~~~~~~~~~~~~~~~~lEiiWTiiP~lIL 73 (90)
T d1v54b2 35 SSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIIL 73 (90)
T ss_dssp HHHHHHHHHHHHSCSCCCCSCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHH
Confidence 444555555545555544444444567888877665543
No 6
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.85 E-value=5.6e+02 Score=12.38 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=9.9
Q ss_pred HHHHHHhCCCChHHH
Q 041987 31 VTKTAMNGGMSPFVF 45 (280)
Q Consensus 31 ~~k~~~~~~~~p~~~ 45 (280)
.+|.|+++|++--++
T Consensus 8 lVkeAM~SGvSK~QF 22 (35)
T d1b0na1 8 LVRDAMTSGVSKKQF 22 (35)
T ss_dssp HHHHHHHSCCCHHHH
T ss_pred HHHHHHHccCCHHHH
Confidence 467777777776553
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.83 E-value=8e+02 Score=14.19 Aligned_cols=22 Identities=14% Similarity=-0.205 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 041987 225 LIIITAIFGSVIRSTVHVSCAEM 247 (280)
Q Consensus 225 ~~~~~g~~~t~~~~~~~~~a~~~ 247 (280)
.+++. +..-+++|..|.|+-++
T Consensus 44 ~~l~v-~PPfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 44 CILRV-APPFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hceEE-cCHHHHHHHHHHHHHHH
Confidence 44455 34778899999988764
No 8
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=1.79 E-value=1.2e+03 Score=16.04 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHhhc
Q 041987 115 LLIPAISFLLSIITRK 130 (280)
Q Consensus 115 ~~~P~~~~il~~i~~~ 130 (280)
-|.|+....+..+...
T Consensus 78 lTtPlll~~l~l~~~~ 93 (226)
T d1xioa_ 78 VTTPLLLLSLSWTAMQ 93 (226)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHH
Confidence 3779888877766533
No 9
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.67 E-value=7.8e+02 Score=14.62 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCChHHHHHHHH
Q 041987 30 IVTKTAMNGGMSPFVFIAYTN 50 (280)
Q Consensus 30 ~~~k~~~~~~~~p~~~~~~R~ 50 (280)
=++|.+.+.+++|-+++-...
T Consensus 32 ~fsre~iek~IsPEeIV~iHk 52 (84)
T d1w53a_ 32 KFSRKTIEHQIPPEEIISIHR 52 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 467788888899999887654
No 10
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.54 E-value=1e+03 Score=14.37 Aligned_cols=20 Identities=15% Similarity=-0.081 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 041987 227 IITAIFGSVIRSTVHVSCAEM 247 (280)
Q Consensus 227 ~~~g~~~t~~~~~~~~~a~~~ 247 (280)
++.+. ..+++|..|.|+-++
T Consensus 56 lyv~P-Pfi~~Y~iy~Wa~~~ 75 (93)
T d3cx5h1 56 LYVLI-PAGIYWYWWKNGNEY 75 (93)
T ss_dssp HHHHH-HHHHHHHHHHHHHHH
T ss_pred eEEcc-hHHHHHHHHHHHHHH
Confidence 34434 667899999998764
Done!