Query 041989
Match_columns 129
No_of_seqs 122 out of 307
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 12:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 2.4E-54 5.3E-59 311.1 9.4 101 12-112 1-101 (101)
2 COG3416 Uncharacterized protei 91.9 0.71 1.5E-05 38.0 6.8 67 53-119 12-78 (233)
3 PF09849 DUF2076: Uncharacteri 85.5 3.7 8E-05 34.0 6.8 62 53-114 12-73 (247)
4 PF09006 Surfac_D-trimer: Lung 83.6 3 6.5E-05 26.6 4.3 32 91-122 1-32 (46)
5 PF07106 TBPIP: Tat binding pr 82.4 0.88 1.9E-05 34.5 1.8 81 36-116 18-106 (169)
6 PF05308 Mito_fiss_reg: Mitoch 82.3 2.2 4.7E-05 35.4 4.2 24 96-119 122-145 (253)
7 PF13334 DUF4094: Domain of un 81.4 1.5 3.3E-05 31.3 2.6 24 88-111 72-95 (95)
8 PRK10265 chaperone-modulator p 75.2 7.1 0.00015 27.6 4.6 33 84-116 66-98 (101)
9 PF11333 DUF3135: Protein of u 72.9 20 0.00042 25.1 6.2 66 36-105 15-82 (83)
10 PF06305 DUF1049: Protein of u 72.0 8.4 0.00018 24.5 4.0 27 90-116 42-68 (68)
11 PF10883 DUF2681: Protein of u 69.4 10 0.00022 27.0 4.2 29 91-119 32-60 (87)
12 PF06698 DUF1192: Protein of u 66.1 15 0.00033 24.3 4.3 26 91-116 23-48 (59)
13 PRK00888 ftsB cell division pr 66.1 13 0.00028 26.7 4.3 25 90-114 28-52 (105)
14 KOG1655 Protein involved in va 66.0 12 0.00027 30.6 4.6 55 44-118 1-55 (218)
15 PF14282 FlxA: FlxA-like prote 66.0 15 0.00033 26.2 4.6 30 90-119 52-81 (106)
16 KOG4552 Vitamin-D-receptor int 64.8 28 0.0006 29.1 6.4 64 53-124 59-127 (272)
17 PF12097 DUF3573: Protein of u 63.4 9.1 0.0002 33.7 3.5 22 90-111 43-64 (383)
18 COG5509 Uncharacterized small 62.6 16 0.00035 24.7 3.9 24 91-114 27-50 (65)
19 cd04766 HTH_HspR Helix-Turn-He 61.0 17 0.00038 24.6 4.0 23 91-113 67-89 (91)
20 PF04977 DivIC: Septum formati 61.0 26 0.00056 22.5 4.7 23 91-113 19-41 (80)
21 PF13591 MerR_2: MerR HTH fami 60.3 12 0.00025 25.5 3.1 23 87-109 61-83 (84)
22 PRK02793 phi X174 lysis protei 58.2 31 0.00067 23.2 4.8 30 90-119 30-59 (72)
23 PF14197 Cep57_CLD_2: Centroso 57.2 27 0.00058 23.5 4.3 33 86-118 37-69 (69)
24 PRK10803 tol-pal system protei 56.6 19 0.00042 29.5 4.2 25 89-113 54-78 (263)
25 PF04977 DivIC: Septum formati 56.4 19 0.00042 23.1 3.5 26 90-115 25-50 (80)
26 PF12325 TMF_TATA_bd: TATA ele 56.3 26 0.00057 26.0 4.5 31 86-116 13-43 (120)
27 PLN02523 galacturonosyltransfe 55.9 58 0.0013 30.3 7.5 55 54-113 144-200 (559)
28 smart00338 BRLZ basic region l 54.5 39 0.00084 21.6 4.6 29 89-117 33-61 (65)
29 PF04728 LPP: Lipoprotein leuc 54.4 29 0.00062 22.9 4.0 20 91-110 12-31 (56)
30 PF06818 Fez1: Fez1; InterPro 53.3 25 0.00055 28.5 4.3 31 88-118 9-39 (202)
31 PF02185 HR1: Hr1 repeat; Int 52.0 32 0.00068 22.4 4.0 30 90-119 34-63 (70)
32 PRK04406 hypothetical protein; 51.6 44 0.00095 22.8 4.7 28 89-116 32-59 (75)
33 PRK14127 cell division protein 50.9 28 0.00061 25.5 3.9 27 90-116 45-71 (109)
34 PRK02119 hypothetical protein; 50.6 59 0.0013 21.9 5.2 27 90-116 31-57 (73)
35 PF03242 LEA_3: Late embryogen 50.5 5.8 0.00013 28.4 0.3 20 73-92 58-77 (93)
36 PF07334 IFP_35_N: Interferon- 50.1 31 0.00066 24.0 3.8 26 91-116 2-27 (76)
37 PRK00846 hypothetical protein; 50.1 50 0.0011 22.9 4.8 31 89-119 34-64 (77)
38 PRK14127 cell division protein 50.0 54 0.0012 24.1 5.3 33 90-122 38-70 (109)
39 PHA02562 46 endonuclease subun 49.4 26 0.00057 30.5 4.2 24 29-52 141-164 (562)
40 TIGR00012 L29 ribosomal protei 49.1 27 0.00059 22.2 3.2 26 98-123 7-32 (55)
41 PRK00451 glycine dehydrogenase 48.8 18 0.0004 30.6 3.1 35 30-65 2-36 (447)
42 PF11461 RILP: Rab interacting 48.8 57 0.0012 21.7 4.7 32 93-124 7-38 (60)
43 PF14282 FlxA: FlxA-like prote 48.7 27 0.00059 24.9 3.5 24 95-118 50-73 (106)
44 PRK00306 50S ribosomal protein 48.0 27 0.00058 22.9 3.1 26 98-123 11-36 (66)
45 PF15300 INT_SG_DDX_CT_C: INTS 47.8 25 0.00053 23.7 2.9 27 51-77 23-51 (65)
46 TIGR02209 ftsL_broad cell divi 47.5 34 0.00074 22.6 3.7 23 91-113 33-55 (85)
47 PF13600 DUF4140: N-terminal d 46.6 44 0.00096 23.0 4.3 30 88-117 69-98 (104)
48 PRK00295 hypothetical protein; 45.9 70 0.0015 21.2 5.0 28 89-116 26-53 (68)
49 PF07716 bZIP_2: Basic region 45.4 68 0.0015 19.9 4.6 26 91-116 27-52 (54)
50 cd01111 HTH_MerD Helix-Turn-He 44.7 73 0.0016 22.6 5.2 29 87-115 78-106 (107)
51 PRK09039 hypothetical protein; 44.6 38 0.00082 28.9 4.3 27 88-114 136-162 (343)
52 PF11853 DUF3373: Protein of u 44.3 26 0.00057 31.9 3.4 31 82-113 18-48 (489)
53 TIGR02209 ftsL_broad cell divi 44.1 40 0.00087 22.2 3.6 31 90-120 25-55 (85)
54 PF08657 DASH_Spc34: DASH comp 43.8 1.1E+02 0.0024 25.4 6.8 69 39-113 136-204 (259)
55 cd00427 Ribosomal_L29_HIP Ribo 43.6 35 0.00076 21.7 3.1 26 98-123 8-33 (57)
56 PRK00736 hypothetical protein; 43.5 94 0.002 20.6 5.3 27 90-116 27-53 (68)
57 PRK15178 Vi polysaccharide exp 42.0 1.5E+02 0.0032 26.7 7.7 39 73-115 267-305 (434)
58 PF15397 DUF4618: Domain of un 41.7 46 0.001 27.9 4.3 55 52-114 52-106 (258)
59 PF07106 TBPIP: Tat binding pr 41.7 52 0.0011 24.7 4.3 73 45-119 14-102 (169)
60 PRK10963 hypothetical protein; 40.7 99 0.0021 24.6 5.9 54 51-113 6-61 (223)
61 PF15483 DUF4641: Domain of un 40.3 32 0.00068 31.1 3.3 31 84-115 414-444 (445)
62 PF12325 TMF_TATA_bd: TATA ele 40.0 67 0.0015 23.8 4.5 27 89-115 30-56 (120)
63 PF12808 Mto2_bdg: Micro-tubul 39.8 1E+02 0.0022 19.9 5.6 42 66-108 7-48 (52)
64 PF04728 LPP: Lipoprotein leuc 39.3 86 0.0019 20.6 4.4 24 90-113 18-41 (56)
65 PF05120 GvpG: Gas vesicle pro 39.1 38 0.00082 23.5 2.9 35 83-117 8-42 (79)
66 PRK00461 rpmC 50S ribosomal pr 38.9 40 0.00087 23.8 3.0 25 98-122 10-34 (87)
67 PHA02047 phage lambda Rz1-like 38.7 80 0.0017 23.1 4.6 18 97-114 35-52 (101)
68 TIGR03021 pilP_fam type IV pil 38.5 57 0.0012 24.0 3.9 26 88-113 4-29 (119)
69 PF11336 DUF3138: Protein of u 38.4 42 0.0009 30.7 3.7 27 88-114 24-50 (514)
70 PRK00888 ftsB cell division pr 37.6 70 0.0015 22.9 4.2 15 44-58 17-31 (105)
71 PF04508 Pox_A_type_inc: Viral 37.4 55 0.0012 18.0 2.8 18 91-108 3-20 (23)
72 PF04706 Dickkopf_N: Dickkopf 37.2 20 0.00044 23.0 1.2 16 11-26 21-36 (52)
73 PRK11239 hypothetical protein; 37.1 59 0.0013 26.7 4.2 31 88-118 182-212 (215)
74 smart00338 BRLZ basic region l 36.9 1E+02 0.0023 19.5 4.6 28 90-117 27-54 (65)
75 PF04012 PspA_IM30: PspA/IM30 36.5 95 0.0021 24.1 5.1 41 67-114 8-48 (221)
76 PLN02742 Probable galacturonos 36.3 1.9E+02 0.0042 26.8 7.7 47 63-113 132-178 (534)
77 KOG4196 bZIP transcription fac 35.5 72 0.0016 24.5 4.1 51 63-113 53-105 (135)
78 PF04102 SlyX: SlyX; InterPro 35.1 60 0.0013 21.4 3.3 27 90-116 26-52 (69)
79 PF00831 Ribosomal_L29: Riboso 34.9 38 0.00083 21.7 2.2 23 98-120 9-31 (58)
80 PRK10884 SH3 domain-containing 34.9 76 0.0016 25.4 4.4 25 91-115 134-158 (206)
81 PF11387 DUF2795: Protein of u 34.8 42 0.00091 20.5 2.3 32 33-64 6-37 (44)
82 PRK15396 murein lipoprotein; P 34.6 69 0.0015 22.2 3.6 27 90-116 26-52 (78)
83 PRK14626 hypothetical protein; 34.5 62 0.0013 23.6 3.5 29 89-117 5-33 (110)
84 PF05308 Mito_fiss_reg: Mitoch 34.4 43 0.00094 27.8 3.0 23 87-109 120-142 (253)
85 PF05377 FlaC_arch: Flagella a 34.4 97 0.0021 20.3 4.1 20 91-110 16-35 (55)
86 PF04420 CHD5: CHD5-like prote 34.2 55 0.0012 24.9 3.4 44 70-117 50-94 (161)
87 PF08227 DASH_Hsk3: DASH compl 33.3 1.1E+02 0.0024 19.1 4.1 25 90-114 3-27 (45)
88 PF07820 TraC: TraC-like prote 32.8 82 0.0018 22.7 3.8 22 91-112 4-25 (92)
89 PF04340 DUF484: Protein of un 32.7 89 0.0019 24.5 4.5 55 51-114 9-65 (225)
90 PF06295 DUF1043: Protein of u 32.6 62 0.0013 23.8 3.3 22 92-113 28-49 (128)
91 PRK14625 hypothetical protein; 32.6 77 0.0017 23.1 3.8 28 91-118 4-31 (109)
92 PF12097 DUF3573: Protein of u 32.5 73 0.0016 28.2 4.2 30 92-121 38-67 (383)
93 PRK14623 hypothetical protein; 32.2 79 0.0017 23.0 3.8 28 91-118 3-30 (106)
94 cd00089 HR1 Protein kinase C-r 31.7 1.5E+02 0.0032 19.3 4.8 28 89-116 42-69 (72)
95 PF00170 bZIP_1: bZIP transcri 31.1 1.4E+02 0.003 19.0 4.4 23 91-113 28-50 (64)
96 PF12718 Tropomyosin_1: Tropom 30.9 98 0.0021 23.2 4.2 27 90-116 36-62 (143)
97 PRK14549 50S ribosomal protein 30.8 69 0.0015 21.4 3.0 25 98-122 14-38 (69)
98 PRK09413 IS2 repressor TnpA; R 30.8 97 0.0021 22.1 4.0 26 91-116 80-105 (121)
99 PF04697 Pinin_SDK_N: pinin/SD 30.7 86 0.0019 24.1 3.9 26 90-115 4-29 (134)
100 KOG4098 Molecular chaperone Pr 30.1 1.1E+02 0.0023 23.7 4.3 61 51-111 49-115 (140)
101 PF06295 DUF1043: Protein of u 29.8 1.1E+02 0.0023 22.6 4.2 23 96-118 25-47 (128)
102 smart00150 SPEC Spectrin repea 29.6 1.5E+02 0.0032 18.6 5.1 36 81-116 23-58 (101)
103 PF05008 V-SNARE: Vesicle tran 29.6 1.6E+02 0.0035 19.1 7.2 40 67-113 39-78 (79)
104 KOG0242 Kinesin-like protein [ 29.6 1E+02 0.0022 29.0 5.0 64 48-111 283-367 (675)
105 COG3879 Uncharacterized protei 29.4 86 0.0019 26.2 4.0 42 73-116 43-84 (247)
106 PF01608 I_LWEQ: I/LWEQ domain 29.4 84 0.0018 24.3 3.7 27 95-121 124-150 (152)
107 PF07798 DUF1640: Protein of u 29.1 1.3E+02 0.0028 23.0 4.7 19 94-112 49-67 (177)
108 PF10883 DUF2681: Protein of u 29.1 1.5E+02 0.0032 21.0 4.6 22 92-113 19-40 (87)
109 PRK14622 hypothetical protein; 28.8 98 0.0021 22.2 3.7 27 91-117 3-29 (103)
110 COG5393 Predicted membrane pro 28.4 58 0.0013 24.8 2.6 32 85-118 95-126 (131)
111 PF14623 Vint: Hint-domain 28.2 11 0.00025 29.5 -1.3 38 44-87 122-159 (162)
112 PRK00587 hypothetical protein; 28.2 1E+02 0.0023 22.1 3.8 28 91-118 3-30 (99)
113 TIGR00293 prefoldin, archaeal 27.9 1.6E+02 0.0034 20.8 4.7 25 91-115 8-32 (126)
114 PRK13169 DNA replication intia 27.9 1.5E+02 0.0032 21.7 4.6 17 93-109 26-42 (110)
115 PF12709 Kinetocho_Slk19: Cent 27.6 1.4E+02 0.003 21.2 4.3 27 90-116 50-76 (87)
116 PRK04325 hypothetical protein; 27.5 1.4E+02 0.003 20.1 4.1 28 89-116 30-57 (74)
117 PRK14624 hypothetical protein; 27.5 1.1E+02 0.0023 22.7 3.8 29 90-118 7-35 (115)
118 PF06005 DUF904: Protein of un 27.2 1.1E+02 0.0024 20.6 3.6 22 86-107 15-36 (72)
119 PRK00153 hypothetical protein; 27.1 73 0.0016 22.5 2.8 29 91-119 5-33 (104)
120 PF13600 DUF4140: N-terminal d 27.0 1.2E+02 0.0026 20.7 3.9 25 90-114 78-102 (104)
121 COG0339 Dcp Zn-dependent oligo 26.9 33 0.00072 32.5 1.2 28 27-54 355-384 (683)
122 PRK03762 hypothetical protein; 26.9 1.1E+02 0.0024 22.0 3.8 26 91-116 7-32 (103)
123 PF14257 DUF4349: Domain of un 26.8 1.4E+02 0.0031 23.8 4.8 32 87-118 160-191 (262)
124 PF05965 FYRC: F/Y rich C-term 26.5 57 0.0012 21.9 2.1 24 42-65 51-76 (86)
125 PRK10803 tol-pal system protei 26.3 1E+02 0.0022 25.2 3.9 26 89-114 61-86 (263)
126 PRK13922 rod shape-determining 26.3 1.4E+02 0.0031 24.0 4.7 38 76-113 53-93 (276)
127 PF02050 FliJ: Flagellar FliJ 26.3 2E+02 0.0043 18.9 4.8 26 89-114 52-77 (123)
128 PF05529 Bap31: B-cell recepto 26.0 1E+02 0.0022 23.6 3.6 28 91-118 156-183 (192)
129 PF06156 DUF972: Protein of un 25.9 1.7E+02 0.0037 21.1 4.6 27 90-116 23-49 (107)
130 PRK01203 prefoldin subunit alp 25.3 1.5E+02 0.0032 22.4 4.3 24 91-114 9-32 (130)
131 PF10828 DUF2570: Protein of u 25.2 1.2E+02 0.0026 21.6 3.7 29 84-112 13-41 (110)
132 PF00172 Zn_clus: Fungal Zn(2) 25.2 44 0.00096 19.5 1.2 14 12-25 2-15 (40)
133 KOG3436 60S ribosomal protein 25.2 98 0.0021 23.4 3.3 25 97-121 13-37 (123)
134 PRK11677 hypothetical protein; 25.2 98 0.0021 23.4 3.3 22 92-113 32-53 (134)
135 PRK14629 hypothetical protein; 25.2 1.2E+02 0.0026 21.8 3.6 25 93-117 7-31 (99)
136 TIGR01010 BexC_CtrB_KpsE polys 25.2 1.3E+02 0.0028 25.2 4.4 60 62-121 142-202 (362)
137 PF13776 DUF4172: Domain of un 25.1 1.9E+02 0.0041 20.1 4.5 46 31-76 9-56 (82)
138 PF08158 NUC130_3NT: NUC130/3N 25.1 85 0.0018 20.0 2.6 37 29-74 5-45 (52)
139 PF06696 Strep_SA_rep: Strepto 24.4 1.4E+02 0.003 16.6 4.1 21 94-114 3-23 (25)
140 TIGR00103 DNA_YbaB_EbfC DNA-bi 24.3 1.4E+02 0.0031 21.1 3.9 29 90-118 6-34 (102)
141 PRK11677 hypothetical protein; 24.1 1.9E+02 0.004 21.9 4.7 23 96-118 29-51 (134)
142 PF03195 DUF260: Protein of un 23.8 1E+02 0.0023 22.1 3.1 22 97-118 79-100 (101)
143 PF09036 Bcr-Abl_Oligo: Bcr-Ab 23.7 1.9E+02 0.0042 20.3 4.3 30 87-116 38-67 (79)
144 PRK14149 heat shock protein Gr 23.6 1.7E+02 0.0038 23.3 4.6 29 89-117 43-71 (191)
145 PF15497 SNAPc19: snRNA-activa 23.6 2.3E+02 0.0049 20.1 4.8 28 89-116 11-38 (91)
146 PF12443 AKNA: AT-hook-contain 23.6 2E+02 0.0043 21.2 4.6 25 90-114 46-70 (106)
147 COG0255 RpmC Ribosomal protein 23.4 1.1E+02 0.0025 20.6 3.1 21 99-119 14-34 (69)
148 TIGR03017 EpsF chain length de 23.4 1.5E+02 0.0032 25.2 4.5 33 89-121 171-203 (444)
149 PRK14627 hypothetical protein; 23.3 1.4E+02 0.0031 21.2 3.7 27 91-117 3-29 (100)
150 PF12443 AKNA: AT-hook-contain 23.2 79 0.0017 23.3 2.4 42 76-117 39-80 (106)
151 PF12737 Mating_C: C-terminal 23.0 65 0.0014 28.7 2.3 20 94-113 400-419 (419)
152 cd00584 Prefoldin_alpha Prefol 22.8 2E+02 0.0043 20.4 4.5 23 91-113 8-30 (129)
153 CHL00154 rpl29 ribosomal prote 22.6 1.1E+02 0.0025 20.3 2.9 23 98-120 14-36 (67)
154 PF11471 Sugarporin_N: Maltopo 22.6 1.9E+02 0.0042 18.9 4.0 20 94-113 30-49 (60)
155 COG0295 Cdd Cytidine deaminase 22.5 55 0.0012 24.9 1.5 23 7-29 82-105 (134)
156 PRK14621 hypothetical protein; 22.4 1.5E+02 0.0033 21.6 3.8 28 90-117 5-32 (111)
157 PF10481 CENP-F_N: Cenp-F N-te 22.2 2.1E+02 0.0046 24.7 5.1 36 84-119 97-132 (307)
158 PF11413 HIF-1: Hypoxia-induci 22.2 24 0.00052 21.2 -0.4 9 28-36 13-21 (34)
159 PF01166 TSC22: TSC-22/dip/bun 21.8 85 0.0018 21.0 2.1 25 92-116 17-41 (59)
160 PF04999 FtsL: Cell division p 21.8 1.9E+02 0.0042 19.5 4.1 24 91-114 44-67 (97)
161 PRK12855 hypothetical protein; 21.6 1E+02 0.0023 22.3 2.8 45 40-86 35-79 (103)
162 cd07920 Pumilio Pumilio-family 21.6 2.5E+02 0.0054 22.4 5.3 42 48-90 164-205 (322)
163 cd00890 Prefoldin Prefoldin is 21.5 2.2E+02 0.0049 19.7 4.5 23 91-113 8-30 (129)
164 PF15619 Lebercilin: Ciliary p 21.5 1.7E+02 0.0036 23.2 4.1 28 90-117 13-40 (194)
165 PF01025 GrpE: GrpE; InterPro 21.5 2E+02 0.0044 21.1 4.4 26 91-116 20-45 (165)
166 PF02183 HALZ: Homeobox associ 21.4 1.6E+02 0.0034 18.2 3.2 20 94-113 17-36 (45)
167 TIGR02231 conserved hypothetic 21.4 1.5E+02 0.0032 26.3 4.2 25 90-114 72-96 (525)
168 PF14653 IGFL: Insulin growth 21.2 50 0.0011 23.7 1.0 16 20-35 42-57 (89)
169 PRK11519 tyrosine kinase; Prov 21.2 1.6E+02 0.0034 27.4 4.5 33 89-121 267-299 (719)
170 PRK15178 Vi polysaccharide exp 21.1 1.9E+02 0.004 26.0 4.8 24 90-113 315-338 (434)
171 COG3105 Uncharacterized protei 21.0 2E+02 0.0044 22.1 4.3 23 92-114 37-59 (138)
172 COG0718 Uncharacterized protei 21.0 1.7E+02 0.0037 21.4 3.8 30 89-118 5-34 (105)
173 smart00307 ILWEQ I/LWEQ domain 20.9 1.4E+02 0.003 24.1 3.6 27 95-121 172-198 (200)
174 PLN02910 polygalacturonate 4-a 20.8 6.7E+02 0.014 24.0 8.4 51 60-114 248-300 (657)
175 KOG0981 DNA topoisomerase I [R 20.8 4.4E+02 0.0096 25.3 7.2 73 44-116 579-663 (759)
176 PRK09841 cryptic autophosphory 20.7 1.6E+02 0.0036 27.3 4.5 33 88-120 266-298 (726)
177 PF05565 Sipho_Gp157: Siphovir 20.6 2.1E+02 0.0046 21.6 4.5 56 53-112 13-70 (162)
178 COG3524 KpsE Capsule polysacch 20.5 1.4E+02 0.003 26.4 3.7 58 55-112 167-246 (372)
179 cd09071 FAR_C C-terminal domai 20.2 52 0.0011 21.8 0.9 21 46-66 45-65 (92)
180 cd06457 M3A_MIP Peptidase M3 m 20.2 42 0.0009 29.4 0.5 27 27-53 124-152 (458)
181 PF06657 Cep57_MT_bd: Centroso 20.1 2.2E+02 0.0047 19.4 4.0 28 88-115 16-43 (79)
182 PRK03947 prefoldin subunit alp 20.1 2.2E+02 0.0047 20.6 4.3 22 92-113 16-37 (140)
183 PRK13729 conjugal transfer pil 20.1 1.9E+02 0.004 26.5 4.6 24 93-116 101-124 (475)
184 PRK10280 dipeptidyl carboxypep 20.1 46 0.00099 31.1 0.8 27 27-53 354-383 (681)
185 PF13334 DUF4094: Domain of un 20.1 2.6E+02 0.0056 19.8 4.5 32 86-117 63-94 (95)
186 PF14841 FliG_M: FliG middle d 20.0 80 0.0017 21.1 1.8 40 34-73 10-49 (79)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=2.4e-54 Score=311.12 Aligned_cols=101 Identities=68% Similarity=1.157 Sum_probs=99.7
Q ss_pred CChhhHHhhhCCCCCCccCCCCCCCChHHHHHHHHHhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHH
Q 041989 12 PCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAI 91 (129)
Q Consensus 12 ~CaaCk~lRR~C~~~C~laPyFp~~~~~~F~~vhkvFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I 91 (129)
+|||||||||+|+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el 112 (129)
+.|+|||+++++||+.+++||
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999886
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.88 E-value=0.71 Score=38.02 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=58.2
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 53 VNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 53 v~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.||+.++.+|+.+..-+
T Consensus 12 lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~ 78 (233)
T COG3416 12 LFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE 78 (233)
T ss_pred HHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344566667789999999999999999999999999999999999999999999999999766543
No 3
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=85.47 E-value=3.7 Score=34.00 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 53 VNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 53 v~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
+..-|+.+....|+.-++.||-|+-.|.-|-+|=-+=.|..++.=|+.++++|+.++.+|..
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456777777899999999999999999999999999999999999999999999999975
No 4
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=83.63 E-value=3 Score=26.59 Aligned_cols=32 Identities=41% Similarity=0.485 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
|..|.+|+..|+.+|..+|+-+..++-....|
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp 32 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAELFP 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 56899999999999999999998877554443
No 5
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.42 E-value=0.88 Score=34.46 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHhhhchHHHHHhhcCchhh---HHHHHHHHHHHhhcccCCCCcc-----hHHHHHHHHHHHHHHHHHHH
Q 041989 36 DEPQKFASVHKVFGASNVNKMLQELQEHQR---SEAVSSMVYEANARFHDPVRGC-----VGAISSLQQQVESLQAQLAL 107 (129)
Q Consensus 36 ~~~~~F~~vhkvFG~snv~k~L~~l~~~~R---~~a~~Sl~YEA~aR~rDPVyGc-----~G~I~~Lq~qi~~lq~eL~~ 107 (129)
.-..-|.|+|.-||-..|.|.|..|-.+.+ ...=.+.||=++--.-+-+..- =.-|..|+.++..++.++..
T Consensus 18 s~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~ 97 (169)
T PF07106_consen 18 SAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKS 97 (169)
T ss_pred cHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999865433 1222344565554333311111 12355566666666666666
Q ss_pred HHHHHHHHh
Q 041989 108 AQAEVEQMR 116 (129)
Q Consensus 108 ~~~el~~~r 116 (129)
++++|..++
T Consensus 98 l~~eL~~L~ 106 (169)
T PF07106_consen 98 LEAELASLS 106 (169)
T ss_pred HHHHHHHHh
Confidence 666665444
No 6
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=82.31 E-value=2.2 Score=35.39 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 96 QQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 96 ~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
++|..||.||+.+|+|||.+-..|
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 677888899999999999776655
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=81.44 E-value=1.5 Score=31.31 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
.-.|..|...|..||+||+.+|++
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345778888888888888888753
No 8
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=75.24 E-value=7.1 Score=27.64 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=28.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 84 VRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 84 VyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-+-.+++|..|-.||+.|+.|+..++++|..+-
T Consensus 66 n~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 66 DWPGIAVALTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344688999999999999999999999887654
No 9
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=72.91 E-value=20 Score=25.07 Aligned_cols=66 Identities=18% Similarity=0.356 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHhhhchHHHHHhhcCchhh--HHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHH
Q 041989 36 DEPQKFASVHKVFGASNVNKMLQELQEHQR--SEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQL 105 (129)
Q Consensus 36 ~~~~~F~~vhkvFG~snv~k~L~~l~~~~R--~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL 105 (129)
++|+.|....+ .-+-.++...|++.+ -.++.+-|=---.|..+|+.-|+-+...+..++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 36888887654 456678888898764 3445555555567889999999999999999998887655
No 10
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=72.05 E-value=8.4 Score=24.55 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
..+.+++++..++.+++.++.|++..|
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346678888889999999988887654
No 11
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=69.40 E-value=10 Score=26.96 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
+-.|+.+.++++.|.+.+++|+.+++.++
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888899999999999999887776
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=66.11 E-value=15 Score=24.28 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|-.|+..|..|++|++.++++++.-+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888887544
No 13
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=66.06 E-value=13 Score=26.71 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.+..++++++.++.+++.++++...
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~ 52 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQ 52 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666676666666666555543
No 14
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.01 E-value=12 Score=30.61 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=36.4
Q ss_pred HHHHhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 44 VHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 44 vhkvFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
.||+||..+- ..|+..-.++..|+=- |. -++...|..|.+||...+.+|..+|.-
T Consensus 1 MnRiFG~~k~-----k~p~psL~dai~~v~~----r~-----------dSve~KIskLDaeL~k~~~Qi~k~R~g 55 (218)
T KOG1655|consen 1 MNRIFGRGKP-----KEPPPSLQDAIDSVNK----RS-----------DSVEKKISKLDAELCKYKDQIKKTRPG 55 (218)
T ss_pred CcccccCCCC-----CCCChhHHHHHHHHHH----hh-----------hhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3789998762 3444444566665522 21 356788888888888888888877643
No 15
>PF14282 FlxA: FlxA-like protein
Probab=66.00 E-value=15 Score=26.24 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
.+..|+.||..|+++|+.++.+.+.-....
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677888888888887777776544333
No 16
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=64.81 E-value=28 Score=29.12 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=43.6
Q ss_pred HHHHHhhcCch-hhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccCCCCC
Q 041989 53 VNKMLQELQEH-QRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALA----QAEVEQMRMRLISPSS 124 (129)
Q Consensus 53 v~k~L~~l~~~-~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~----~~el~~~r~~~~~~~~ 124 (129)
+.+||+-+|+. +|+.+|+.|--+-+.|.+ .|.+||.++...+.-|+.+ +.+|+.+....--|-|
T Consensus 59 f~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvs 127 (272)
T KOG4552|consen 59 FKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVS 127 (272)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555555653 588999988655555543 6999999999888777754 6677766655544433
No 17
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=63.37 E-value=9.1 Score=33.74 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
.|..||+||..||.||..++++
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4777888888888888777766
No 18
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=62.60 E-value=16 Score=24.70 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
|-.|.+.|..||+|++.+++|++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777888888888888888774
No 19
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=61.01 E-value=17 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
|..|..+++.|+.||+.+++++-
T Consensus 67 ~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 67 ILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33488888888888888887764
No 20
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=60.99 E-value=26 Score=22.51 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+..+++++..++.+++.++++..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~ 41 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENE 41 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 21
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=60.32 E-value=12 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 041989 87 CVGAISSLQQQVESLQAQLALAQ 109 (129)
Q Consensus 87 c~G~I~~Lq~qi~~lq~eL~~~~ 109 (129)
.+++|.+|-.+|+.|+.||..++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999998876
No 22
>PRK02793 phi X174 lysis protein; Provisional
Probab=58.17 E-value=31 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
+|...+++|..|+.+|..+..+|...+...
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 566677788888888888888877655433
No 23
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=57.21 E-value=27 Score=23.51 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 86 GCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 86 Gc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
|.+.-+...-..+..|++|+..++.||...|.+
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455556667788888888899888888877654
No 24
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.60 E-value=19 Score=29.46 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
..+..|++||+.++.|+..++.+|.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E 78 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQ 78 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3567888999999888888877666
No 25
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.43 E-value=19 Score=23.12 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
.|..|+.+++.++.+...++.++...
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888888888888877765
No 26
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=56.32 E-value=26 Score=25.95 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 86 GCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 86 Gc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
..+.+|..|+.+|..++.|+..+|.+++...
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788888888888888777777543
No 27
>PLN02523 galacturonosyltransferase
Probab=55.89 E-value=58 Score=30.26 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHhhcCc--hhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 54 NKMLQELQE--HQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 54 ~k~L~~l~~--~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
...+++||+ .+|-.+|..++++|.. +|-+..+|.+|+..|..+++++..++.+-+
T Consensus 144 ~~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~ 200 (559)
T PLN02523 144 EDVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGA 200 (559)
T ss_pred hHHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567775 4678999999999993 444678999999999999999999987655
No 28
>smart00338 BRLZ basic region leucin zipper.
Probab=54.52 E-value=39 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
+-|..|+.+...|+.++..++.++..++.
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666665544
No 29
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.40 E-value=29 Score=22.88 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQA 110 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~ 110 (129)
|+.|..+|.+|..++..++.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 30
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=53.26 E-value=25 Score=28.51 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
.|-|+-|++|+.+.|+|++.=-.||...|.+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~q 39 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQ 39 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5889999999999999999877888766654
No 31
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=52.03 E-value=32 Score=22.44 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
+....+.++......|..++.+|..++...
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556666667777777777777777555443
No 32
>PRK04406 hypothetical protein; Provisional
Probab=51.61 E-value=44 Score=22.75 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.+|...|++|..|+.+|..+..+|....
T Consensus 32 ~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 32 DALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566667777777777777777776544
No 33
>PRK14127 cell division protein GpsB; Provisional
Probab=50.89 E-value=28 Score=25.54 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.+..|+.++..|+.+|+..+.++...+
T Consensus 45 e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 45 EIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 455666666666666666666666443
No 34
>PRK02119 hypothetical protein; Provisional
Probab=50.61 E-value=59 Score=21.95 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+|..-+++|..|+.+|..+..+|....
T Consensus 31 ~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566677777777777777777776544
No 35
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=50.51 E-value=5.8 Score=28.37 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.0
Q ss_pred HHHHhhcccCCCCcchHHHH
Q 041989 73 VYEANARFHDPVRGCVGAIS 92 (129)
Q Consensus 73 ~YEA~aR~rDPVyGc~G~I~ 92 (129)
-.|-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56678999999999986543
No 36
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=50.12 E-value=31 Score=24.04 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|..|+.+...|+.+|..+.+||...+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888877433
No 37
>PRK00846 hypothetical protein; Provisional
Probab=50.06 E-value=50 Score=22.90 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
.+|...+++|..++.+|..+..+|.......
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4566777888888888888888887766444
No 38
>PRK14127 cell division protein GpsB; Provisional
Probab=49.98 E-value=54 Score=24.05 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
-+-.|..++..|+.++..++.+|..++.+...+
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455688999999999999999999888766543
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=49.40 E-value=26 Score=30.50 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=11.9
Q ss_pred cCCCCCCCChHHHHHHHHHhhhch
Q 041989 29 FAPYFPADEPQKFASVHKVFGASN 52 (129)
Q Consensus 29 laPyFp~~~~~~F~~vhkvFG~sn 52 (129)
|.|.++.....+-..+.++||...
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~~ 164 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDISV 164 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCHH
Confidence 344444444445555555555543
No 40
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=49.12 E-value=27 Score=22.18 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISPS 123 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~~ 123 (129)
.++|+.+|..++.+|...|+++..-.
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~ 32 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQ 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677778888888887777664433
No 41
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=48.84 E-value=18 Score=30.56 Aligned_cols=35 Identities=17% Similarity=0.546 Sum_probs=28.8
Q ss_pred CCCCCCCChHHHHHHHHHhhhchHHHHHhhcCchhh
Q 041989 30 APYFPADEPQKFASVHKVFGASNVNKMLQELQEHQR 65 (129)
Q Consensus 30 aPyFp~~~~~~F~~vhkvFG~snv~k~L~~l~~~~R 65 (129)
-||.|.. ++.-..+-+.||.++|-.++..+|.+.|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3999997 8888899999999999888877775444
No 42
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=48.77 E-value=57 Score=21.72 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 041989 93 SLQQQVESLQAQLALAQAEVEQMRMRLISPSS 124 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~~~ 124 (129)
..-++-+.|++.+-.++.||+.+|.-...++.
T Consensus 7 ~VL~ERNeLK~~v~~leEEL~~yk~~~~~~~~ 38 (60)
T PF11461_consen 7 EVLQERNELKARVFLLEEELAYYKSELLPDEE 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccc
Confidence 44456788999999999999999876655544
No 43
>PF14282 FlxA: FlxA-like protein
Probab=48.69 E-value=27 Score=24.94 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 95 QQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 95 q~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
+.++..|+++|..++++|+.++.+
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544443
No 44
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=47.96 E-value=27 Score=22.91 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISPS 123 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~~ 123 (129)
.++|+.+|..++.||...|+++....
T Consensus 11 ~~eL~~~l~~lkkeL~~lR~~~~~~~ 36 (66)
T PRK00306 11 VEELNEKLLELKKELFNLRFQKATGQ 36 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677778888888888887664443
No 45
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=47.84 E-value=25 Score=23.71 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.6
Q ss_pred chHHHHHhhc--CchhhHHHHHHHHHHHh
Q 041989 51 SNVNKMLQEL--QEHQRSEAVSSMVYEAN 77 (129)
Q Consensus 51 snv~k~L~~l--~~~~R~~a~~Sl~YEA~ 77 (129)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3688899887 78999999999999995
No 46
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.53 E-value=34 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+..+++++..++.|...++.|+.
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 47
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=46.64 E-value=44 Score=22.98 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
-..+..|+.+|+.++.+++.+++++.-.+.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888888775543
No 48
>PRK00295 hypothetical protein; Provisional
Probab=45.94 E-value=70 Score=21.22 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.+|...+++|..|+.+|..+..+|....
T Consensus 26 ~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 26 DVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777888888888888877777654
No 49
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=45.41 E-value=68 Score=19.91 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+..|+.++..|+.+...++.++..++
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777776543
No 50
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=44.65 E-value=73 Score=22.55 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 87 CVGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 87 c~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
|...+..+..+|+..+.+|+.++++|..+
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888899999888888753
No 51
>PRK09039 hypothetical protein; Validated
Probab=44.56 E-value=38 Score=28.90 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
...|..|++||+.|+.||+.++++|.-
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888777763
No 52
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=44.30 E-value=26 Score=31.88 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 82 DPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 82 DPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.|.....--|..+| ||++|+.||+.+++|+.
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 34444444555566 99999999999988876
No 53
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.15 E-value=40 Score=22.21 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMRLI 120 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~ 120 (129)
.+..++.++..++.+++.++++....+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888888888877776666553
No 54
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=43.85 E-value=1.1e+02 Score=25.42 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 39 QKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 39 ~~F~~vhkvFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.+-..|..+-|.--+-.+..+++++.=-..+..|+ ..-|+.|.-.-|..|.++.+.+..+++.++++++
T Consensus 136 ~~~~avA~vlG~~m~~e~~~d~dvevLL~~ae~L~------~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~Va 204 (259)
T PF08657_consen 136 RRNTAVALVLGGVMHEEIVEDVDVEVLLRGAEKLC------NVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVA 204 (259)
T ss_pred HHHHHHHHhccCcccccccccCCHHHHHHHHHHHH------HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666666544444434444433333333332 2348999999999999999999988888888887
No 55
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=43.63 E-value=35 Score=21.72 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISPS 123 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~~ 123 (129)
..+|+.+|..++.|+...|+++....
T Consensus 8 ~~eL~~~l~~l~~elf~Lr~q~~~~~ 33 (57)
T cd00427 8 DEELQEKLDELKKELFNLRFQKATGQ 33 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 35677777777888877777664443
No 56
>PRK00736 hypothetical protein; Provisional
Probab=43.50 E-value=94 Score=20.61 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+|..-+++|..|+.+|..+..+|....
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777777777777776543
No 57
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=41.99 E-value=1.5e+02 Score=26.66 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=20.2
Q ss_pred HHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 73 VYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 73 ~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
-|.-...+.||.- .+..+...|..|+.||..++++|+.+
T Consensus 267 ~fRn~~gvlDP~~----~a~~~~~lI~~Le~qLa~~~aeL~~L 305 (434)
T PRK15178 267 KIQHIQKDIDPKE----TITAIYQLIAGFETQLAEAKAEYAQL 305 (434)
T ss_pred HHHHhCCCcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556777753 33344444455555555555555544
No 58
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.69 E-value=46 Score=27.89 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=37.0
Q ss_pred hHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 52 NVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 52 nv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
+++.+|...+..+..+|-..| -|..-+. --.++.|++|+..|.+.+..++.|+..
T Consensus 52 ~~i~~le~~~~~~l~~ak~eL-qe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQAKAEL-QEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred HHHHHHHccChHHHHHHHHHH-HHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655554444443 3333332 246889999999999999999999883
No 59
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.67 E-value=52 Score=24.74 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=38.5
Q ss_pred HHHhhhchHHHHHhh-cCchhhHHHHHHHHHHHhhcccCCCCcchHH---------------HHHHHHHHHHHHHHHHHH
Q 041989 45 HKVFGASNVNKMLQE-LQEHQRSEAVSSMVYEANARFHDPVRGCVGA---------------ISSLQQQVESLQAQLALA 108 (129)
Q Consensus 45 hkvFG~snv~k~L~~-l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~---------------I~~Lq~qi~~lq~eL~~~ 108 (129)
.|=|++.+|..-|.. ++-..=..++++|+=+.....+ +||=.-+ +..+..+|.+|+.||..+
T Consensus 14 NRPys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K--~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l 91 (169)
T PF07106_consen 14 NRPYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEK--EYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAEL 91 (169)
T ss_pred CCCCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeee--eecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 344666666666654 4444445556666554433333 4553322 334555666666666666
Q ss_pred HHHHHHHhhcc
Q 041989 109 QAEVEQMRMRL 119 (129)
Q Consensus 109 ~~el~~~r~~~ 119 (129)
+.++...+..-
T Consensus 92 ~~~~k~l~~eL 102 (169)
T PF07106_consen 92 KKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHH
Confidence 66666554443
No 60
>PRK10963 hypothetical protein; Provisional
Probab=40.68 E-value=99 Score=24.57 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=39.2
Q ss_pred chHHHHHhhcCc--hhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 51 SNVNKMLQELQE--HQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 51 snv~k~L~~l~~--~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
..|...|++=|. .+.++.+.. .++-.|..| .|+-.+.|++.|+.++..++.+|.
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~~------L~lph~~~g---aVSL~ErQ~~~LR~r~~~Le~~l~ 61 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVEQ------MRVPHPVRG---TVSLVEWQMARQRNHIHVLEEEMT 61 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHHh------ccCCCCCCC---eecHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777774 567777764 467777655 777888888888888888877776
No 61
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=40.26 E-value=32 Score=31.07 Aligned_cols=31 Identities=32% Similarity=0.602 Sum_probs=23.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 84 VRGCVGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 84 VyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
+-||-.-| -||.+|++|+.||+.+|.-...+
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~kf 444 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADKF 444 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666655 49999999999999998766543
No 62
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.98 E-value=67 Score=23.79 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
|-|..|++++..++.+-..+.+||...
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888888743
No 63
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=39.82 E-value=1e+02 Score=19.88 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 041989 66 SEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALA 108 (129)
Q Consensus 66 ~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~ 108 (129)
.+...-|.-|=++|..|+- |+---|..|..+...|+++|...
T Consensus 7 ~ELe~klkaerE~R~~d~~-~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 7 EELERKLKAEREARSLDRS-AARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHhHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777788998883 44445555555555555555443
No 64
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=39.26 E-value=86 Score=20.63 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
-|.+|+..|..++.++..++.|.+
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666655
No 65
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=39.11 E-value=38 Score=23.54 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=17.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 83 PVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 83 PVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
||.|.+-+.-+++.+.+.---+-+.++.+|+....
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~ 42 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQE 42 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 44444444444444443333334566777765443
No 66
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=38.93 E-value=40 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
.++|+.+|..++.||..+|+++..-
T Consensus 10 ~eEL~e~L~elkkELf~LR~q~atg 34 (87)
T PRK00461 10 VEELEKLVIELKAELFTLRFKNATG 34 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567777888888888777776543
No 67
>PHA02047 phage lambda Rz1-like protein
Probab=38.70 E-value=80 Score=23.14 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041989 97 QVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 97 qi~~lq~eL~~~~~el~~ 114 (129)
..+++.++|+.++.++..
T Consensus 35 ~a~~la~qLE~a~~r~~~ 52 (101)
T PHA02047 35 EAKRQTARLEALEVRYAT 52 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 68
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=38.46 E-value=57 Score=24.01 Aligned_cols=26 Identities=46% Similarity=0.575 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+|-+..||.+...++++++.++.+-.
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~e 29 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQNE 29 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999888887765544
No 69
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=38.40 E-value=42 Score=30.69 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.-.|..|+.||..||.|...++++|+.
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999999888873
No 70
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.64 E-value=70 Score=22.90 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=9.0
Q ss_pred HHHHhhhchHHHHHh
Q 041989 44 VHKVFGASNVNKMLQ 58 (129)
Q Consensus 44 vhkvFG~snv~k~L~ 58 (129)
.+-+||..++.++.+
T Consensus 17 y~l~~g~~G~~~~~~ 31 (105)
T PRK00888 17 YSLWFGKNGILDYWR 31 (105)
T ss_pred HHHhccCCcHHHHHH
Confidence 456677776655443
No 71
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=37.44 E-value=55 Score=17.97 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALA 108 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~ 108 (129)
|..|+..|.+|+.||+.-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566778888888887654
No 72
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=37.22 E-value=20 Score=23.03 Aligned_cols=16 Identities=44% Similarity=1.088 Sum_probs=14.9
Q ss_pred CCChhhHHhhhCCCCC
Q 041989 11 SPCAACKLIRRRCAQD 26 (129)
Q Consensus 11 ~~CaaCk~lRR~C~~~ 26 (129)
+.|..||-++++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 7899999999999976
No 73
>PRK11239 hypothetical protein; Provisional
Probab=37.15 E-value=59 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
.+.+..|+..+..|++|++.++++++.++.+
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456779999999999999999999877654
No 74
>smart00338 BRLZ basic region leucin zipper.
Probab=36.91 E-value=1e+02 Score=19.52 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
.|..|+.++..|+.+...++.++..++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777766666666665543
No 75
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=36.52 E-value=95 Score=24.09 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 67 EAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 67 ~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.++.+-+-++--++.||. ..|.+.|.+++.+|..++..++.
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~ 48 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALAR 48 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666765 55666666666666666665553
No 76
>PLN02742 Probable galacturonosyltransferase
Probab=36.31 E-value=1.9e+02 Score=26.75 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 63 HQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 63 ~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+++-..|+.++++|..= -|.|.-++.+|...|..++.|+..++.+-+
T Consensus 132 ~~~~~~m~~~i~~ak~~----~~d~~~~~~klr~~l~~~e~~~~~~~~q~~ 178 (534)
T PLN02742 132 EPIIRDLAALIYQAQDL----HYDSATTIMTLKAHIQALEERANAATVQST 178 (534)
T ss_pred HHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889888654 456999999999999999999998877655
No 77
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=35.52 E-value=72 Score=24.51 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHhhcccCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 63 HQRSEAVSSMVYEANARFHDP--VRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 63 ~~R~~a~~Sl~YEA~aR~rDP--VyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.||..+.+-==|-+++|++-= -..-=--=..|++||+.|+.|++.++-|+-
T Consensus 53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777788888886510 000000112366666666666666666665
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.08 E-value=60 Score=21.42 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+|...+.+|..|+.+|..+..+|...+
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666544
No 79
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=34.90 E-value=38 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLI 120 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~ 120 (129)
.++|+.+|..++.+|..+|++..
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~ 31 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKA 31 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777776666653
No 80
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.90 E-value=76 Score=25.43 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
|..|+.+.++|+.||+.+++++...
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5558888888888888887777543
No 81
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=34.76 E-value=42 Score=20.48 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHHhhhchHHHHHhhcCchh
Q 041989 33 FPADEPQKFASVHKVFGASNVNKMLQELQEHQ 64 (129)
Q Consensus 33 Fp~~~~~~F~~vhkvFG~snv~k~L~~l~~~~ 64 (129)
||+++.+--..+.+-=....|+..|+.||..+
T Consensus 6 yPa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~~ 37 (44)
T PF11387_consen 6 YPADKDELVRHARRNGAPDDVLDALERLPDRE 37 (44)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHCCccC
Confidence 78886555555555555567899999999543
No 82
>PRK15396 murein lipoprotein; Provisional
Probab=34.58 E-value=69 Score=22.22 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-+-+|+.+++.|..+...+...+...|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655555443
No 83
>PRK14626 hypothetical protein; Provisional
Probab=34.53 E-value=62 Score=23.56 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
|-+..+..|.+++|.++..+|+||+....
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~~v 33 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKEEI 33 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 44778888999999999999999986554
No 84
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=34.40 E-value=43 Score=27.77 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 041989 87 CVGAISSLQQQVESLQAQLALAQ 109 (129)
Q Consensus 87 c~G~I~~Lq~qi~~lq~eL~~~~ 109 (129)
..--|..||.+|..|++|+|.+-
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999873
No 85
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.38 E-value=97 Score=20.31 Aligned_cols=20 Identities=10% Similarity=0.306 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQA 110 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~ 110 (129)
|..++.+++++..++..++.
T Consensus 16 i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 86
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.23 E-value=55 Score=24.92 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHHHHHHhh-cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 70 SSMVYEANA-RFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 70 ~Sl~YEA~a-R~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
..+.-|.++ -.+| =+.--.+|+++++.+++||+.+++++...+.
T Consensus 50 ~~l~~E~~~iS~qD----eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 50 LQLKRELNAISAQD----EFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHTTS-TTT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444 4444 5667778999999999999999998886544
No 87
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=33.26 E-value=1.1e+02 Score=19.14 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.+++|..|+.+|++-|+.+.+.|..
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~ 27 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEM 27 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3677888888888888888777663
No 88
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=32.81 E-value=82 Score=22.72 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el 112 (129)
++.|..||+.||.+|..+..+.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~ke 25 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKE 25 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888887775543
No 89
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=32.75 E-value=89 Score=24.52 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=22.4
Q ss_pred chHHHHHhhcCc--hhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 51 SNVNKMLQELQE--HQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 51 snv~k~L~~l~~--~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
..|...|++=|. .+.++++..|. +..|. -|.|+-.+.|++.|+.+...++.+|..
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~------~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~~ 65 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELR------LPHPS---GGAVSLVERQLERLRERNRQLEEQLEE 65 (225)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcC------CCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555655553 45667776653 44553 369999999999999999999888874
No 90
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.63 E-value=62 Score=23.79 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
..|+++|++.+.||+.-|.++.
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~ 49 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVN 49 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444
No 91
>PRK14625 hypothetical protein; Provisional
Probab=32.57 E-value=77 Score=23.15 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
+..+.+|.+.+|.++..+|++|+.....
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~v~ 31 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETTVE 31 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 6778889999999999999999876543
No 92
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=32.45 E-value=73 Score=28.25 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 041989 92 SSLQQQVESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
...++.|.+||.|+..+|+||.++..+.-+
T Consensus 38 ~~~~~~i~~Lq~QI~~Lq~ei~~l~~~~~~ 67 (383)
T PF12097_consen 38 QNDQQEISELQKQIQQLQAEINQLEEQNNS 67 (383)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456788999999999999999988888433
No 93
>PRK14623 hypothetical protein; Provisional
Probab=32.21 E-value=79 Score=22.97 Aligned_cols=28 Identities=4% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
+..+..|.+.+|.++..+|++|+.....
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~v~ 30 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVLID 30 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 6678889999999999999999876543
No 94
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=31.71 E-value=1.5e+02 Score=19.30 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|.+...+.++......|..++.+|..+.
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888888888877553
No 95
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.05 E-value=1.4e+02 Score=18.96 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
|..|+.++..|+.+...++.++.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=30.92 E-value=98 Score=23.24 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-|..|+..+..|+.+|..++.+|....
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888777776443
No 97
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=30.81 E-value=69 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
.++|+.+|..++.||...|.++...
T Consensus 14 ~~eL~~~l~elk~eLf~LR~q~~~~ 38 (69)
T PRK14549 14 PEEREEKLEELKLELLKERAQAAMG 38 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677778888888888888766443
No 98
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=30.77 E-value=97 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|..|..++.+|+.|++.++..++..+
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666655554433
No 99
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=30.71 E-value=86 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
.|..||.||+.++..|..+.+-|.++
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKl 29 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKL 29 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 57789999999999999998888755
No 100
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=30.13 E-value=1.1e+02 Score=23.72 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=36.3
Q ss_pred chHHHHHhhcCchhhH------HHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 51 SNVNKMLQELQEHQRS------EAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 51 snv~k~L~~l~~~~R~------~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
+-|++.|++++|..+- -++..-|-|.--=...-.-|--++|..|..|+.+...||..-+.+
T Consensus 49 ~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~ 115 (140)
T KOG4098|consen 49 KLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKD 115 (140)
T ss_pred HHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466777777776552 222333333333344445567777888888888887777766543
No 101
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.78 E-value=1.1e+02 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 041989 96 QQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 96 ~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
++...|+.||+.++.||..+|..
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQE 47 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999988753
No 102
>smart00150 SPEC Spectrin repeats.
Probab=29.62 E-value=1.5e+02 Score=18.65 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=29.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 81 HDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 81 rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.+|+.+.+..|..+..+...++.++...+..+....
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~ 58 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALN 58 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356678899999999999999999988887777443
No 103
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.62 E-value=1.6e+02 Score=19.06 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 67 EAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 67 ~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+++..|=+|+. .-+| ..-..++.+|...+.+|..++.++.
T Consensus 39 ~~l~qMe~E~~--~~p~-----s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 39 ELLKQMELEVR--SLPP-----SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHC--TS-H-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555544 4422 6667899999999999999988875
No 104
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.60 E-value=1e+02 Score=28.96 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=51.1
Q ss_pred hhhchHHHHHhh-------------cCc--hhhHHHHHHHHHHHhhcc------cCCCCcchHHHHHHHHHHHHHHHHHH
Q 041989 48 FGASNVNKMLQE-------------LQE--HQRSEAVSSMVYEANARF------HDPVRGCVGAISSLQQQVESLQAQLA 106 (129)
Q Consensus 48 FG~snv~k~L~~-------------l~~--~~R~~a~~Sl~YEA~aR~------rDPVyGc~G~I~~Lq~qi~~lq~eL~ 106 (129)
|--|+++++||. +.| ..-++..+||.|++.+.- ++++-.-.-++..++.++..++.++.
T Consensus 283 YRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~ 362 (675)
T KOG0242|consen 283 YRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELE 362 (675)
T ss_pred ccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHH
Confidence 556788888875 223 358999999999999874 78888888899999999999999998
Q ss_pred HHHHH
Q 041989 107 LAQAE 111 (129)
Q Consensus 107 ~~~~e 111 (129)
.++..
T Consensus 363 ~~~~~ 367 (675)
T KOG0242|consen 363 RLKKK 367 (675)
T ss_pred hhccc
Confidence 75433
No 105
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.44 E-value=86 Score=26.23 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=30.0
Q ss_pred HHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 73 VYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 73 ~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-+|-..|.+|+ =-.-.+.++|.++.+|++|...+++.+...+
T Consensus 43 k~~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 43 KGESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred cCcchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555 4556778888888888888888888888666
No 106
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=29.35 E-value=84 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 041989 95 QQQVESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 95 q~qi~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
|-.|=.|+.+|..++.+|..+|-.+|.
T Consensus 124 Qv~iL~lE~eLe~ar~kL~~lRk~~Y~ 150 (152)
T PF01608_consen 124 QVRILKLEKELEKARKKLAELRKAHYH 150 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 335567788899999999998887764
No 107
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.14 E-value=1.3e+02 Score=23.03 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el 112 (129)
+.++....++.++.++.++
T Consensus 49 ~e~~~~~~~a~~~eLr~el 67 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSEL 67 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 108
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=29.07 E-value=1.5e+02 Score=21.03 Aligned_cols=22 Identities=32% Similarity=0.154 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
..+.+++..++.+.+.+++|..
T Consensus 19 ~y~~~k~~ka~~~~~kL~~en~ 40 (87)
T PF10883_consen 19 AYLWWKVKKAKKQNAKLQKENE 40 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555554
No 109
>PRK14622 hypothetical protein; Provisional
Probab=28.78 E-value=98 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
+..|..|.+++|.++..+|++|+....
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~v 29 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIAV 29 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 567888999999999999999986544
No 110
>COG5393 Predicted membrane protein [Function unknown]
Probab=28.43 E-value=58 Score=24.81 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=26.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 85 RGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 85 yGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
.|..|.||.|.+-++.. =+..++.||++.|..
T Consensus 95 l~~i~ciW~lrks~~s~--l~~aT~~ELanDRe~ 126 (131)
T COG5393 95 LALIGCIWTLRKSRKST--LLRATRHELANDREL 126 (131)
T ss_pred HHHHHHHHHHHHHHhHh--HHHHHHHHHhhhHHh
Confidence 46789999999988877 677889999988754
No 111
>PF14623 Vint: Hint-domain
Probab=28.21 E-value=11 Score=29.52 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=27.6
Q ss_pred HHHHhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcc
Q 041989 44 VHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGC 87 (129)
Q Consensus 44 vhkvFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc 87 (129)
+|.+||...|.+-|..|+.-.-. +.+...-.|||..|-
T Consensus 122 aH~fFG~~~V~~~L~~L~~~~~G------~v~~~g~~Rd~~Tgl 159 (162)
T PF14623_consen 122 AHAFFGDNAVVRDLASLPGFANG------VVECRGVKRDPETGL 159 (162)
T ss_pred eecccCcHHHHHHHHhCCCCCCC------EEEecceEECccccc
Confidence 79999999999999999874222 334445578887663
No 112
>PRK00587 hypothetical protein; Provisional
Probab=28.20 E-value=1e+02 Score=22.09 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
+..|..|.+.+|.++..+|++|+....-
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~~v~ 30 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEKEFD 30 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 4577888899999999999999865543
No 113
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.88 E-value=1.6e+02 Score=20.82 Aligned_cols=25 Identities=52% Similarity=0.611 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
+..|+++++.+++++..++..+..+
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~ 32 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAEL 32 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555543
No 114
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.85 E-value=1.5e+02 Score=21.73 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041989 93 SLQQQVESLQAQLALAQ 109 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~ 109 (129)
.|+.++..+-.|-+.++
T Consensus 26 ~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 26 ALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 115
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=27.65 E-value=1.4e+02 Score=21.25 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-|..|+.++..+..|...++.+|...|
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777766544
No 116
>PRK04325 hypothetical protein; Provisional
Probab=27.54 E-value=1.4e+02 Score=20.10 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.+|...+.+|..|+.+|..+..+|....
T Consensus 30 ~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 30 ATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556667777777777777777766543
No 117
>PRK14624 hypothetical protein; Provisional
Probab=27.48 E-value=1.1e+02 Score=22.66 Aligned_cols=29 Identities=7% Similarity=0.253 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
-+..+..|.++.|.++..+|++|+....-
T Consensus 7 nm~~~mkqAq~mQ~km~~~QeeL~~~~v~ 35 (115)
T PRK14624 7 NMSEALSNMGNIREKMEEVKKRIASIRVV 35 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 36778889999999999999999876543
No 118
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.20 E-value=1.1e+02 Score=20.64 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 041989 86 GCVGAISSLQQQVESLQAQLAL 107 (129)
Q Consensus 86 Gc~G~I~~Lq~qi~~lq~eL~~ 107 (129)
..+-.|..|+.++..|+.+-..
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~ 36 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777776333
No 119
>PRK00153 hypothetical protein; Validated
Probab=27.10 E-value=73 Score=22.45 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
+..+..|.+.+|.++..+|++|+......
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~ 33 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEG 33 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 66788899999999999999998665443
No 120
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.96 E-value=1.2e+02 Score=20.74 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.|..|+.++..++.++..++++++.
T Consensus 78 ~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 78 ELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667888888888888888887764
No 121
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=26.89 E-value=33 Score=32.53 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=22.6
Q ss_pred CccCCCCCCCC--hHHHHHHHHHhhhchHH
Q 041989 27 CVFAPYFPADE--PQKFASVHKVFGASNVN 54 (129)
Q Consensus 27 C~laPyFp~~~--~~~F~~vhkvFG~snv~ 54 (129)
=-+.||||-++ .--|..++++||..=+-
T Consensus 355 ~elrpYF~l~~Vl~GlF~~~~rLfGI~~~e 384 (683)
T COG0339 355 EELRPYFPLNKVLEGLFEVAKRLFGITFVE 384 (683)
T ss_pred HHhhhcCChhHHHHHHHHHHHHHcCeEEEE
Confidence 45899999985 57899999999976443
No 122
>PRK03762 hypothetical protein; Provisional
Probab=26.86 E-value=1.1e+02 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
...+..+....|.+++.+|++|+...
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~~~~ 32 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENANKE 32 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 35667778888889999999988543
No 123
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.82 E-value=1.4e+02 Score=23.84 Aligned_cols=32 Identities=6% Similarity=0.290 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 87 CVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 87 c~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
-+.-|..++++|.+++.||+.++.++..+..+
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999998866544
No 124
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=26.51 E-value=57 Score=21.90 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=18.0
Q ss_pred HHHHHHhhhch--HHHHHhhcCchhh
Q 041989 42 ASVHKVFGASN--VNKMLQELQEHQR 65 (129)
Q Consensus 42 ~~vhkvFG~sn--v~k~L~~l~~~~R 65 (129)
.+-+.+||.++ |.++|++||-.++
T Consensus 51 isG~~~FGls~p~V~~lie~Lp~a~~ 76 (86)
T PF05965_consen 51 ISGPEMFGLSNPAVQRLIESLPGADK 76 (86)
T ss_dssp --HHHHHSTTSHHHHHHHTTSTTGGG
T ss_pred CCHhHhcCCCCHHHHHHHHhCCCcch
Confidence 45688999875 8999999996543
No 125
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.35 E-value=1e+02 Score=25.19 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.-|..||++|..|+-+++..+.+|..
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556666666666666666555554
No 126
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.34 E-value=1.4e+02 Score=23.96 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=21.1
Q ss_pred HhhcccCCCCcchH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 76 ANARFHDPVRGCVG---AISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 76 A~aR~rDPVyGc~G---~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+-.+..+.+.+.+. .+..|..+.+.|++|++.++.++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 53 VVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433 345566667777777766665555
No 127
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.28 E-value=2e+02 Score=18.94 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
+.|..|...|..++.++..++.++..
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~ 77 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQ 77 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666655553
No 128
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.98 E-value=1e+02 Score=23.60 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
...++.++++++.||+.++.++...+.|
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777776666666655443
No 129
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.86 E-value=1.7e+02 Score=21.14 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-|..|+.++..|-.|-+.++-|..+.|
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444444444333
No 130
>PRK01203 prefoldin subunit alpha; Provisional
Probab=25.28 E-value=1.5e+02 Score=22.44 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
+..|++|++.|+.||..++..+..
T Consensus 9 ~~~~~~q~e~l~~ql~~L~~a~se 32 (130)
T PRK01203 9 LNYIESLISSVDSQIDSLNKTLSE 32 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555443
No 131
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=25.21 E-value=1.2e+02 Score=21.58 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 84 VRGCVGAISSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 84 VyGc~G~I~~Lq~qi~~lq~eL~~~~~el 112 (129)
|-|-.|.+|...+.|..|+++.+.....|
T Consensus 13 vl~L~~~l~~qs~~i~~L~a~n~~q~~tI 41 (110)
T PF10828_consen 13 VLGLGGWLWYQSQRIDRLRAENKAQAQTI 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888876544444
No 132
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=25.19 E-value=44 Score=19.52 Aligned_cols=14 Identities=21% Similarity=0.812 Sum_probs=9.9
Q ss_pred CChhhHHhhhCCCC
Q 041989 12 PCAACKLIRRRCAQ 25 (129)
Q Consensus 12 ~CaaCk~lRR~C~~ 25 (129)
+|..|+..+.+|..
T Consensus 2 aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 2 ACDRCRRRKVKCDG 15 (40)
T ss_dssp SBHHHHHHTS--ST
T ss_pred cChHHHhhCcCcCC
Confidence 68888888888876
No 133
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=98 Score=23.45 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 041989 97 QVESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 97 qi~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
..++|+.||..++.||+..|.+..+
T Consensus 13 ~ke~L~~ql~dLK~ELa~LRv~K~t 37 (123)
T KOG3436|consen 13 SKEQLLKQLDDLKVELAQLRVAKVT 37 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3477777788888888888877654
No 134
>PRK11677 hypothetical protein; Provisional
Probab=25.17 E-value=98 Score=23.43 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
..|+.++++.+.||+.-|.|+.
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~ 53 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELV 53 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444
No 135
>PRK14629 hypothetical protein; Provisional
Probab=25.16 E-value=1.2e+02 Score=21.84 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 93 SLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
.+..|.+++|.++..+|++|+....
T Consensus 7 ~~mkqaq~mQ~km~~~Q~eL~~~~v 31 (99)
T PRK14629 7 DFLKNMSSFKDNIDNIKKEISQIVV 31 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEE
Confidence 4778888889999999999886443
No 136
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.15 E-value=1.3e+02 Score=25.15 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=39.4
Q ss_pred chhhHHHHHHHHHHHhhcccCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 041989 62 EHQRSEAVSSMVYEANARFHDP-VRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 62 ~~~R~~a~~Sl~YEA~aR~rDP-VyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
|+.=..++++++-+++..+.+= .--.-..+..+++|+..++.+|..++.+|..+|.++--
T Consensus 142 P~~A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 142 AEEAQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444566677744443332220 00023566789999999999999999999988887643
No 137
>PF13776 DUF4172: Domain of unknown function (DUF4172)
Probab=25.11 E-value=1.9e+02 Score=20.08 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=25.3
Q ss_pred CCCCCCChHHHHHHHH-HhhhchHHHHHhhcCchhh-HHHHHHHHHHH
Q 041989 31 PYFPADEPQKFASVHK-VFGASNVNKMLQELQEHQR-SEAVSSMVYEA 76 (129)
Q Consensus 31 PyFp~~~~~~F~~vhk-vFG~snv~k~L~~l~~~~R-~~a~~Sl~YEA 76 (129)
|.|.||...--....+ .+....+...+..++.+.| +..+++|.-|+
T Consensus 9 P~F~wd~~~l~~~l~~~~~~~G~LlG~~~~l~~~~~~~~~l~~l~~e~ 56 (82)
T PF13776_consen 9 PNFRWDSSALEPLLAEVRLRQGRLLGKMSHLGFDLRQEAILDTLTAEI 56 (82)
T ss_pred CCCEEcHHHHHHHHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 8899984322111111 1233346677788886655 45556666655
No 138
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=25.06 E-value=85 Score=20.04 Aligned_cols=37 Identities=19% Similarity=0.470 Sum_probs=25.7
Q ss_pred cCCCCCCCChHHHHHHHHHhhhchHHHHHhh----cCchhhHHHHHHHHH
Q 041989 29 FAPYFPADEPQKFASVHKVFGASNVNKMLQE----LQEHQRSEAVSSMVY 74 (129)
Q Consensus 29 laPyFp~~~~~~F~~vhkvFG~snv~k~L~~----l~~~~R~~a~~Sl~Y 74 (129)
.++|+|-+ ...|.. -+..+|++ |+|+.|...+.||+-
T Consensus 5 va~cYp~~-~~~Fp~--------~L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 5 VAHCYPKE-TKDFPQ--------ELIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred cccccHHH-HHHHHH--------HHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 46777764 555543 35555653 899999999999974
No 139
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=24.37 E-value=1.4e+02 Score=16.60 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.+..+..-+++|+.+|.+++.
T Consensus 3 Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456677888888888877764
No 140
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=24.34 E-value=1.4e+02 Score=21.09 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
-+..+..|.+++|.++..+|.+|+..+..
T Consensus 6 n~~~m~kqaq~mQ~k~~~~q~eL~~~~v~ 34 (102)
T TIGR00103 6 NLGELMKQAQQMQEKMKKLQEEIAQFEVT 34 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 36778888888999999999999866543
No 141
>PRK11677 hypothetical protein; Provisional
Probab=24.10 E-value=1.9e+02 Score=21.91 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 041989 96 QQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 96 ~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
.+...|+.||+.++.||..+|..
T Consensus 29 ~~q~~le~eLe~~k~ele~Ykqe 51 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQE 51 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999887753
No 142
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=23.78 E-value=1e+02 Score=22.07 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041989 97 QVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 97 qi~~lq~eL~~~~~el~~~r~~ 118 (129)
.|..|+.+|..+++||+..+.+
T Consensus 79 ~i~~L~~ql~~~~~el~~~~~~ 100 (101)
T PF03195_consen 79 IISQLQQQLQQLQAELALVRAQ 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4778999999999999877653
No 143
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=23.66 E-value=1.9e+02 Score=20.27 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 87 CVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 87 c~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|-+.|..|++++++-.=..-.+|+-|+..|
T Consensus 38 CK~sirrLeqevnkERFrmiYLQTlLAkEr 67 (79)
T PF09036_consen 38 CKASIRRLEQEVNKERFRMIYLQTLLAKER 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556667777777666666666666666444
No 144
>PRK14149 heat shock protein GrpE; Provisional
Probab=23.56 E-value=1.7e+02 Score=23.34 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
..|..|+.++..++..+..+++++..+|-
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rK 71 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999887764
No 145
>PF15497 SNAPc19: snRNA-activating protein complex subunit 19, SNAPc subunit 19
Probab=23.56 E-value=2.3e+02 Score=20.12 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.++..|+.|++.|+-|=-.++.-+...+
T Consensus 11 ~i~~~i~~qLN~LkVEEL~LkSmi~~~~ 38 (91)
T PF15497_consen 11 KILPKIQDQLNRLKVEELHLKSMISQQK 38 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677788888888877777777666544
No 146
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=23.55 E-value=2e+02 Score=21.20 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
-|+.++..+..|..++..++.++..
T Consensus 46 ~~~ege~~~qkL~eqteeLK~kvqe 70 (106)
T PF12443_consen 46 KIREGEQMIQKLGEQTEELKDKVQE 70 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665553
No 147
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=23.44 E-value=1.1e+02 Score=20.63 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 041989 99 ESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 99 ~~lq~eL~~~~~el~~~r~~~ 119 (129)
++|..+|..++.||..+|+|.
T Consensus 14 eeL~~~l~eLK~ELf~LR~q~ 34 (69)
T COG0255 14 EELEEELRELKKELFNLRFQL 34 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544
No 148
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.43 E-value=1.5e+02 Score=25.18 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
-.+..|+.|+..++.+|..++.+|..+|..+--
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999887643
No 149
>PRK14627 hypothetical protein; Provisional
Probab=23.25 E-value=1.4e+02 Score=21.18 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
+..+..|.+.+|.++..+|++|+....
T Consensus 3 ~~~~mkqaq~mQ~km~~~Q~el~~~~v 29 (100)
T PRK14627 3 QRQLMQMAQQMQRQMQKVQEELAATIV 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 345677888889999999999886543
No 150
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=23.22 E-value=79 Score=23.29 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=35.5
Q ss_pred HhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 76 ANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 76 A~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
..-++-||+.=-=.+|.+|..++++|+..+...+.++.....
T Consensus 39 ~sp~~f~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~~~~~ 80 (106)
T PF12443_consen 39 GSPGIFDKIREGEQMIQKLGEQTEELKDKVQEFSKRIEQDSP 80 (106)
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCc
Confidence 345678898888999999999999999999999998874433
No 151
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=22.95 E-value=65 Score=28.67 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~ 113 (129)
=++|++.|+++.+.+++||+
T Consensus 400 K~reL~eLeAq~~aL~AELA 419 (419)
T PF12737_consen 400 KRRELEELEAQARALRAELA 419 (419)
T ss_pred HHHHHHHHHHHHHHHHhhhC
Confidence 35677777777777777774
No 152
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.83 E-value=2e+02 Score=20.40 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+..|+.+++.+++++..++..+.
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~ 30 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIA 30 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544
No 153
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=22.59 E-value=1.1e+02 Score=20.33 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLI 120 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~ 120 (129)
+++|+++|..++.|+-..|+|+.
T Consensus 14 ~~eL~~~l~elk~elf~LRfq~a 36 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLRLKKA 36 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776653
No 154
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.58 E-value=1.9e+02 Score=18.89 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~ 113 (129)
+++.|+.|+.+|..++.++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~ 49 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQ 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555
No 155
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=22.50 E-value=55 Score=24.90 Aligned_cols=23 Identities=30% Similarity=0.817 Sum_probs=17.4
Q ss_pred CCCCCCChhhHHh-hhCCCCCCcc
Q 041989 7 QGALSPCAACKLI-RRRCAQDCVF 29 (129)
Q Consensus 7 ~g~~~~CaaCk~l-RR~C~~~C~l 29 (129)
....+||.+||-. ..=|.++...
T Consensus 82 ~~~~sPCG~CRQ~i~Ef~~~d~~i 105 (134)
T COG0295 82 GKPVSPCGACRQVLAEFCGDDTLI 105 (134)
T ss_pred CCCcCCcHHHHHHHHHhcCCCceE
Confidence 5578999999954 7777777654
No 156
>PRK14621 hypothetical protein; Provisional
Probab=22.43 E-value=1.5e+02 Score=21.59 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
-+..+..|.++.|.++..+|++|+....
T Consensus 5 nm~~mmkqaq~mQ~km~~~Q~eL~~~~v 32 (111)
T PRK14621 5 NLGDMMKQIQQAGEKMQDVQKQLEKLVA 32 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccEE
Confidence 3677888999999999999999986543
No 157
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.20 E-value=2.1e+02 Score=24.70 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=27.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 84 VRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 84 VyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
|+.--|-+...+.+|+.|..+|...+.||.+.+...
T Consensus 97 v~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455567788888889999999999999988554433
No 158
>PF11413 HIF-1: Hypoxia-inducible factor-1; InterPro: IPR021537 Hypoxia-inducible factors (HIFs) are transcription factors that respond to changes in available oxygen in the cellular environment. Specifically, they respond to decreases in oxygen, mediating the effects of hypoxia []. HIFs are heterodimers, composed of an alpha and a beta subunit. At least 3 different alpha subunits are known to exist, termed HIF-1, -2 and -3 alpha. Beta subunits, meanwhile, are constitutively-expressed aryl hydrocarbon receptor nuclear translocators (ARNTs). In addition to their role in hypoxia, HIFs have been shown to be involved in a range of processes, including angiogenesis, metal transport, mitochondrial function and cell growth []. This entry represents HIF alpha subunits.; PDB: 3HQU_S 1LQB_D 1LM8_H 3HQR_S.
Probab=22.16 E-value=24 Score=21.16 Aligned_cols=9 Identities=56% Similarity=1.257 Sum_probs=6.0
Q ss_pred ccCCCCCCC
Q 041989 28 VFAPYFPAD 36 (129)
Q Consensus 28 ~laPyFp~~ 36 (129)
.+|||.|-+
T Consensus 13 mLAPYIpMd 21 (34)
T PF11413_consen 13 MLAPYIPMD 21 (34)
T ss_dssp GTSBB--SS
T ss_pred HhcCccccC
Confidence 589999988
No 159
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.85 E-value=85 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 92 SSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-.|+.+|..|+.+...++.|-..+|
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665555555544433
No 160
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.81 E-value=1.9e+02 Score=19.54 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
+..+++++.+++.|-..++-|++.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666553
No 161
>PRK12855 hypothetical protein; Provisional
Probab=21.63 E-value=1e+02 Score=22.26 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCc
Q 041989 40 KFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRG 86 (129)
Q Consensus 40 ~F~~vhkvFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyG 86 (129)
-|+.+..+||-. ++...++-.+-|++|++.|.-||...--|-|-|
T Consensus 35 ~~a~lr~ivGG~--~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVVg 79 (103)
T PRK12855 35 LFASVRDVVGGR--SGAYESKLKEARDIAMEEMKTLARQKNANAIVG 79 (103)
T ss_pred HHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 456678888843 444555556689999999999999988887766
No 162
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=21.63 E-value=2.5e+02 Score=22.40 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=32.8
Q ss_pred hhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHH
Q 041989 48 FGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGA 90 (129)
Q Consensus 48 FG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~ 90 (129)
+|-.-|.++|+.++++++...++.|.-....=..|| ||.+=+
T Consensus 164 ~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~-~Gn~vv 205 (322)
T cd07920 164 YGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQ-FGNYVV 205 (322)
T ss_pred cccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC-chhhHH
Confidence 566778888888888888888888888777777774 777643
No 163
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.52 E-value=2.2e+02 Score=19.68 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+..|+++|+.+++++..++.++.
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~ 30 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLT 30 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444
No 164
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.51 E-value=1.7e+02 Score=23.23 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
-|-.|+++|..++.+|..++.|....+-
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888777664443
No 165
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.48 E-value=2e+02 Score=21.10 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|..|+.++..++.++..+.+++..++
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~~ 45 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENYR 45 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777666666666443
No 166
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.43 E-value=1.6e+02 Score=18.21 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~ 113 (129)
|..+.+.|+.|...+++|+.
T Consensus 17 Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 17 LKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554
No 167
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.40 E-value=1.5e+02 Score=26.28 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.|..|+.+|..++.+++.+++++..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~ 96 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDA 96 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777766653
No 168
>PF14653 IGFL: Insulin growth factor-like family
Probab=21.23 E-value=50 Score=23.66 Aligned_cols=16 Identities=38% Similarity=1.026 Sum_probs=13.7
Q ss_pred hhCCCCCCccCCCCCC
Q 041989 20 RRRCAQDCVFAPYFPA 35 (129)
Q Consensus 20 RR~C~~~C~laPyFp~ 35 (129)
-++|.++|.|.|.|.-
T Consensus 42 T~~Cg~~Ctf~pcfe~ 57 (89)
T PF14653_consen 42 TRKCGPNCTFWPCFEK 57 (89)
T ss_pred ccccCCCCCccCcccc
Confidence 3789999999999964
No 169
>PRK11519 tyrosine kinase; Provisional
Probab=21.18 E-value=1.6e+02 Score=27.40 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
..+..|++|+..++.+|..++.+|..+|.++-.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467789999999999999999999999887643
No 170
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.12 E-value=1.9e+02 Score=26.02 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
-|-.|+.+|..|+.|++..++++.
T Consensus 315 qV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 315 LIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777777777777766664
No 171
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.01 E-value=2e+02 Score=22.13 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
..+|.+++.++.+|..-|.||..
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~ 59 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVK 59 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777777763
No 172
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.00 E-value=1.7e+02 Score=21.39 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
+-+..|..|.++.|.++..+|+||+....-
T Consensus 5 ~~~~~l~kqaqqmQ~~~~~~Q~ela~~ev~ 34 (105)
T COG0718 5 MDMQKLMKQAQQMQKKMQKMQEELAQKEVT 34 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcEEe
Confidence 457788899999999999999999976543
No 173
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=20.90 E-value=1.4e+02 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 041989 95 QQQVESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 95 q~qi~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
|-+|=.|+.+|..++..|..+|-.+|.
T Consensus 172 Qv~IL~lE~~L~~ar~~L~~lRk~~Y~ 198 (200)
T smart00307 172 QVEILKLENELEAARKKLAEIRKQHYE 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556788999999999999988775
No 174
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=20.79 E-value=6.7e+02 Score=24.03 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=41.4
Q ss_pred cCc--hhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 60 LQE--HQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 60 l~~--~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
||+ .++-.+|.-++++|. +=-|.|--++.+|...|..++.|+...+.+-+.
T Consensus 248 lp~~~~~k~~~M~~~l~~ak----~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~ 300 (657)
T PLN02910 248 LHSSALDQAKAMGHVLSIAK----DQLYDCHTMARKLRAMLQSTERKVDALKKKSAF 300 (657)
T ss_pred cCchHHHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 456788888888775 556789999999999999999999998876553
No 175
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=20.77 E-value=4.4e+02 Score=25.30 Aligned_cols=73 Identities=23% Similarity=0.310 Sum_probs=52.4
Q ss_pred HHHHhhhchHHHHHhh----cCchhhHHHHHHHHHHHhhcc--------cCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 44 VHKVFGASNVNKMLQE----LQEHQRSEAVSSMVYEANARF--------HDPVRGCVGAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 44 vhkvFG~snv~k~L~~----l~~~~R~~a~~Sl~YEA~aR~--------rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
-.+||..=|....|++ ++...-.-+..-|.|-.-.|. |-+--|---.+..|+..|..++.||..++.+
T Consensus 579 TAKVFRTYNASiTlqeqL~~lt~p~~~v~~KIl~YnrANr~VAIlCNHQR~v~K~h~~smekl~~kI~~~keql~e~~~~ 658 (759)
T KOG0981|consen 579 TAKVFRTYNASITLQEQLDKLTNPDGNVAAKILSYNRANRTVAILCNHQRAVSKTHEKSMEKLAEKIKAKKEQLKEAEAE 658 (759)
T ss_pred hhhhhhhcchhhHHHHHHHhccCCCccHHHHHHHHhhccceeeeeecccccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688988888777764 333233456777889877764 4455566667888999999999999988888
Q ss_pred HHHHh
Q 041989 112 VEQMR 116 (129)
Q Consensus 112 l~~~r 116 (129)
|..-+
T Consensus 659 l~~ak 663 (759)
T KOG0981|consen 659 LKSAK 663 (759)
T ss_pred HHHhh
Confidence 87543
No 176
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.69 E-value=1.6e+02 Score=27.32 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMRMRLI 120 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~ 120 (129)
.-.+..|++|+..++.+|..++.+|..+|.++-
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~ 298 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD 298 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 446788999999999999999999999998764
No 177
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=20.64 E-value=2.1e+02 Score=21.65 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=38.4
Q ss_pred HHHHHhh--cCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 53 VNKMLQE--LQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 53 v~k~L~~--l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el 112 (129)
+..++.+ ++++.-.|++.+| ..-..|-+-|++.+|..++..++.+++|...+++.-
T Consensus 13 l~~~~e~~~~d~e~~~dtLe~i----~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rk 70 (162)
T PF05565_consen 13 LLELLEEGDLDEEAIADTLESI----EDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERK 70 (162)
T ss_pred HHHHHhcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344443 4455556666663 444567888999999999999888888887775543
No 178
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=20.49 E-value=1.4e+02 Score=26.38 Aligned_cols=58 Identities=28% Similarity=0.426 Sum_probs=37.6
Q ss_pred HHHhhcCchhhHHHHHH---HHHHHhhc----------------ccCCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 55 KMLQELQEHQRSEAVSS---MVYEANAR----------------FHDPVRGC---VGAISSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 55 k~L~~l~~~~R~~a~~S---l~YEA~aR----------------~rDPVyGc---~G~I~~Lq~qi~~lq~eL~~~~~el 112 (129)
++++.|...-|.|.|+- -|-+|+.| +-||--|. +|.|+.|+.++-.++++|..+|...
T Consensus 167 ~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m 246 (372)
T COG3524 167 KLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666655542 23333333 34666664 7899999999988888888876544
No 179
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=20.24 E-value=52 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=18.0
Q ss_pred HHhhhchHHHHHhhcCchhhH
Q 041989 46 KVFGASNVNKMLQELQEHQRS 66 (129)
Q Consensus 46 kvFG~snv~k~L~~l~~~~R~ 66 (129)
-.|-..|+.++.+.+++++|+
T Consensus 45 w~F~~~n~~~L~~~l~~~Dr~ 65 (92)
T cd09071 45 WRFDNDNTRALWERLSEEDRE 65 (92)
T ss_pred EEeeCcHHHHHHHHCCHHHHH
Confidence 357889999999999998886
No 180
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=20.20 E-value=42 Score=29.42 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=19.7
Q ss_pred CccCCCCCCCC--hHHHHHHHHHhhhchH
Q 041989 27 CVFAPYFPADE--PQKFASVHKVFGASNV 53 (129)
Q Consensus 27 C~laPyFp~~~--~~~F~~vhkvFG~snv 53 (129)
=.++||||-+. .--|..+.++||..=+
T Consensus 124 ~~l~~YFpl~~vl~gl~~~~~~lfgi~~~ 152 (458)
T cd06457 124 SNLSPYFSLGTVMEGLSRLFSRLYGIRLV 152 (458)
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhCeEEE
Confidence 34789999874 3567778999997653
No 181
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.13 E-value=2.2e+02 Score=19.45 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
.-+|..|+.++..++.++..+++++..+
T Consensus 16 s~vl~~LqDE~~hm~~e~~~L~~~~~~~ 43 (79)
T PF06657_consen 16 SEVLKALQDEFGHMKMEHQELQDEYKQM 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778888888888888887776643
No 182
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.11 E-value=2.2e+02 Score=20.59 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
..|+++++.++.++..++..+.
T Consensus 16 ~~l~~~~~~l~~~~~~l~~~~~ 37 (140)
T PRK03947 16 QALQAQIEALQQQLEELQASIN 37 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 183
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.10 E-value=1.9e+02 Score=26.48 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 93 SLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.++++|+.+++|++.+++++...+
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777777777777777765333
No 184
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=20.10 E-value=46 Score=31.11 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=21.6
Q ss_pred CccCCCCCCCCh---HHHHHHHHHhhhchH
Q 041989 27 CVFAPYFPADEP---QKFASVHKVFGASNV 53 (129)
Q Consensus 27 C~laPyFp~~~~---~~F~~vhkvFG~snv 53 (129)
=.++||||-+.- --|..++++||..=+
T Consensus 354 ~~l~~YFpl~~Vl~~Glf~l~~~LfGi~f~ 383 (681)
T PRK10280 354 AQLKPYFELNTVLNEGVFWTANQLFGIKFV 383 (681)
T ss_pred HHcCCcCcHHHHHHHhHHHHHHHHcCeEEE
Confidence 358999999853 468889999998754
No 185
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=20.07 E-value=2.6e+02 Score=19.79 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 86 GCVGAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 86 Gc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
..+|-|.+-.+-|+.|...+..++.||+.-|.
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888899999999999999999997764
No 186
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=20.03 E-value=80 Score=21.12 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=26.0
Q ss_pred CCCChHHHHHHHHHhhhchHHHHHhhcCchhhHHHHHHHH
Q 041989 34 PADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMV 73 (129)
Q Consensus 34 p~~~~~~F~~vhkvFG~snv~k~L~~l~~~~R~~a~~Sl~ 73 (129)
-.+-|+-=+.+--.--...-.++|..+|++.|.+++.-|.
T Consensus 10 ~~EhPq~iAliLs~L~~~~AA~VL~~lp~e~r~~v~~Ria 49 (79)
T PF14841_consen 10 KDEHPQTIALILSYLPPEQAAEVLSQLPEELRAEVVRRIA 49 (79)
T ss_dssp TTS-HHHHHHHHHTS-HHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3344555555544555666778899999999999988773
Done!