Query 041989
Match_columns 129
No_of_seqs 122 out of 307
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 22:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 91.4 0.33 1.1E-05 27.7 4.0 28 89-116 2-29 (33)
2 2er8_A Regulatory protein Leu3 82.2 2.9 9.9E-05 26.0 5.0 21 89-109 49-69 (72)
3 2ke4_A CDC42-interacting prote 75.2 12 0.0004 25.9 6.7 42 73-115 47-88 (98)
4 1nkp_B MAX protein, MYC proto- 73.4 6.7 0.00023 25.6 4.9 32 88-119 46-77 (83)
5 2qdq_A Talin-1; dimerisation d 72.7 8.2 0.00028 24.1 4.8 31 94-124 13-43 (50)
6 3r4h_A Coiled coil helix CC-TE 71.9 7 0.00024 22.2 4.0 28 89-116 2-29 (34)
7 3mq7_A Bone marrow stromal ant 71.0 5.8 0.0002 28.8 4.4 24 89-112 78-101 (121)
8 1zme_C Proline utilization tra 67.7 5.4 0.00018 24.4 3.3 25 89-113 44-68 (70)
9 4e61_A Protein BIM1; EB1-like 67.1 9.5 0.00032 27.1 4.8 31 86-116 1-31 (106)
10 2dgc_A Protein (GCN4); basic d 64.4 14 0.00047 23.4 4.8 30 89-118 30-59 (63)
11 3ra3_B P2F; coiled coil domain 63.7 9.7 0.00033 20.8 3.4 25 91-115 2-26 (28)
12 1am9_A Srebp-1A, protein (ster 63.4 13 0.00045 24.3 4.7 28 88-115 49-76 (82)
13 2xdj_A Uncharacterized protein 61.4 14 0.00046 24.9 4.6 24 90-113 21-44 (83)
14 3nmd_A CGMP dependent protein 60.3 14 0.00047 24.6 4.3 29 89-117 40-68 (72)
15 1hlo_A Protein (transcription 55.5 12 0.00041 24.2 3.4 24 88-111 56-79 (80)
16 1uuj_A Platelet-activating fac 53.2 5.9 0.0002 27.2 1.6 24 91-114 60-83 (88)
17 1dh3_A Transcription factor CR 53.2 27 0.00091 21.4 4.6 28 90-117 23-50 (55)
18 1a93_B MAX protein, coiled coi 52.6 22 0.00076 20.4 3.8 23 91-113 9-31 (34)
19 2zvf_A Alanyl-tRNA synthetase; 51.2 56 0.0019 23.1 6.8 46 71-116 14-59 (171)
20 2wg5_A General control protein 50.1 21 0.00071 24.6 4.1 29 91-119 9-37 (109)
21 1zxa_A CGMP-dependent protein 49.9 26 0.00087 22.9 4.3 30 90-119 26-55 (67)
22 1urf_A Protein kinase C-like 1 48.1 61 0.0021 21.9 6.7 20 47-66 24-43 (81)
23 2yy0_A C-MYC-binding protein; 47.7 16 0.00056 22.5 2.9 26 90-115 20-45 (53)
24 2l5g_B Putative uncharacterize 46.9 31 0.001 20.7 3.9 24 94-117 7-30 (42)
25 2yy0_A C-MYC-binding protein; 46.4 36 0.0012 20.9 4.4 24 90-113 27-50 (53)
26 1yhn_B RILP, RAB interacting l 45.3 37 0.0013 22.1 4.4 30 93-122 7-36 (65)
27 2wt7_A Proto-oncogene protein 45.0 37 0.0013 21.1 4.4 23 91-113 25-47 (63)
28 1t2k_D Cyclic-AMP-dependent tr 44.8 45 0.0015 20.4 4.7 26 91-116 31-56 (61)
29 2pbi_A Regulator of G-protein 44.3 18 0.00062 30.6 3.6 69 38-106 143-236 (424)
30 1buu_A Protein (mannose-bindin 43.6 20 0.00069 25.2 3.3 24 92-115 19-42 (168)
31 1nlw_A MAD protein, MAX dimeri 43.6 43 0.0015 21.9 4.7 29 88-116 46-74 (80)
32 2z5i_A TM, general control pro 41.9 48 0.0016 20.2 4.4 28 89-116 12-39 (52)
33 3i00_A HIP-I, huntingtin-inter 41.5 44 0.0015 23.7 4.8 31 68-109 30-60 (120)
34 1ci6_A Transcription factor AT 41.0 47 0.0016 20.7 4.4 26 91-116 32-57 (63)
35 3myf_A Sensor protein; HPT, hi 40.9 83 0.0029 21.4 6.4 64 40-111 52-115 (119)
36 1jcd_A Major outer membrane li 40.4 45 0.0016 20.6 4.1 22 92-113 21-42 (52)
37 2yny_A General control protein 39.9 49 0.0017 23.4 4.8 29 88-116 75-103 (106)
38 3v2d_2 50S ribosomal protein L 39.8 36 0.0012 22.0 3.8 25 98-122 18-42 (72)
39 1gk6_A Vimentin; intermediate 39.2 43 0.0015 20.7 4.0 20 94-113 5-24 (59)
40 3twe_A Alpha4H; unknown functi 39.1 44 0.0015 18.0 3.4 21 92-112 4-24 (27)
41 2wt7_B Transcription factor MA 37.8 50 0.0017 22.5 4.4 62 54-115 12-81 (90)
42 1t2k_D Cyclic-AMP-dependent tr 37.5 68 0.0023 19.5 4.7 26 91-116 24-49 (61)
43 1hjb_A Ccaat/enhancer binding 37.2 53 0.0018 22.2 4.4 29 90-118 44-72 (87)
44 2w6a_A ARF GTPase-activating p 37.0 55 0.0019 21.1 4.2 24 93-116 38-61 (63)
45 3azd_A Short alpha-tropomyosin 36.9 7.9 0.00027 22.3 0.2 26 90-115 5-30 (37)
46 3kqg_A Langerin, C-type lectin 36.4 60 0.002 22.6 4.9 26 89-114 16-41 (182)
47 1jnm_A Proto-oncogene C-JUN; B 36.4 73 0.0025 19.5 4.7 23 91-113 31-53 (62)
48 1x8y_A Lamin A/C; structural p 36.2 53 0.0018 21.6 4.3 24 90-113 29-52 (86)
49 3r8s_Y 50S ribosomal protein L 36.1 26 0.0009 22.1 2.6 24 98-121 11-34 (63)
50 3u1c_A Tropomyosin alpha-1 cha 35.7 56 0.0019 22.1 4.4 27 88-114 43-69 (101)
51 2wt7_A Proto-oncogene protein 35.5 66 0.0023 19.9 4.5 27 90-116 31-57 (63)
52 1ic2_A Tropomyosin alpha chain 35.5 49 0.0017 21.4 4.0 46 64-113 20-65 (81)
53 1gu4_A CAAT/enhancer binding p 34.9 69 0.0024 21.1 4.6 30 90-119 44-73 (78)
54 2k48_A Nucleoprotein; viral pr 34.8 58 0.002 23.1 4.4 27 88-114 34-60 (107)
55 1gk4_A Vimentin; intermediate 34.6 59 0.002 21.2 4.3 36 71-113 15-50 (84)
56 1vcs_A Vesicle transport throu 34.5 59 0.002 22.0 4.4 38 76-118 59-96 (102)
57 3mud_A DNA repair protein XRCC 34.2 59 0.002 24.8 4.7 44 62-116 119-162 (175)
58 3trt_A Vimentin; cytoskeleton, 34.2 39 0.0013 21.3 3.3 18 91-108 58-75 (77)
59 1gd2_E Transcription factor PA 33.9 74 0.0025 20.6 4.6 21 94-114 48-68 (70)
60 2k48_A Nucleoprotein; viral pr 33.8 50 0.0017 23.4 4.0 22 89-110 82-103 (107)
61 2ic6_A Nucleocapsid protein; h 33.5 55 0.0019 21.9 4.0 22 89-110 52-73 (78)
62 3viq_B Mating-type switching p 33.4 62 0.0021 21.9 4.3 25 93-117 5-29 (85)
63 1kd8_B GABH BLL, GCN4 acid bas 33.2 73 0.0025 18.5 4.4 27 91-117 3-29 (36)
64 3ra3_A P1C; coiled coil domain 33.0 46 0.0016 18.0 2.9 23 93-115 4-26 (28)
65 2y9y_A Imitation switch protei 32.9 1.6E+02 0.0056 24.7 7.7 80 35-118 126-213 (374)
66 1r73_A TM1492, 50S ribosomal p 32.7 39 0.0014 21.4 3.1 22 99-120 12-33 (66)
67 3j21_W 50S ribosomal protein L 32.4 39 0.0013 21.8 3.1 24 98-121 11-34 (72)
68 3viq_B Mating-type switching p 32.2 30 0.001 23.5 2.5 25 89-113 8-32 (85)
69 2xv5_A Lamin-A/C; structural p 31.1 75 0.0026 20.7 4.3 8 109-116 46-53 (74)
70 2z2q_B Coat protein gamma; wil 30.9 44 0.0015 20.2 2.8 23 83-105 20-42 (44)
71 3e98_A GAF domain of unknown f 30.8 42 0.0014 26.1 3.5 53 52-113 35-89 (252)
72 3iyn_Q Protein IX, PIX, hexon- 30.8 82 0.0028 23.1 4.8 36 91-126 100-135 (140)
73 1vq8_V 50S ribosomal protein L 30.2 45 0.0016 21.4 3.1 24 98-121 14-37 (71)
74 2ic9_A Nucleocapsid protein; h 29.7 66 0.0023 22.4 4.0 22 89-110 52-73 (96)
75 3kin_B Kinesin heavy chain; mo 29.6 78 0.0027 21.9 4.4 61 56-116 45-116 (117)
76 1ybx_A Conserved hypothetical 29.3 47 0.0016 24.4 3.4 29 89-117 41-69 (143)
77 3ol1_A Vimentin; structural ge 29.3 92 0.0032 21.6 4.8 28 89-116 20-47 (119)
78 1avy_A Fibritin, gpwac M; bact 29.0 1.2E+02 0.004 20.1 4.9 32 91-122 17-48 (74)
79 2ic6_A Nucleocapsid protein; h 29.0 60 0.0021 21.8 3.5 26 88-113 4-29 (78)
80 1nov_D Nodamura virus coat pro 29.0 50 0.0017 20.0 2.8 23 83-105 20-42 (44)
81 3m91_A Proteasome-associated A 28.8 1E+02 0.0035 18.8 4.4 27 91-117 18-44 (51)
82 2xdj_A Uncharacterized protein 28.7 84 0.0029 20.9 4.3 28 89-116 27-54 (83)
83 1ef1_C Moesin; membrane, FERM 28.5 20 0.00067 24.6 1.1 17 92-108 29-45 (90)
84 2ic9_A Nucleocapsid protein; h 28.0 73 0.0025 22.1 4.0 25 89-113 5-29 (96)
85 3i00_A HIP-I, huntingtin-inter 27.9 64 0.0022 22.9 3.8 22 95-116 39-60 (120)
86 1uii_A Geminin; human, DNA rep 27.5 83 0.0028 21.3 4.1 26 91-116 48-73 (83)
87 3dwl_G Actin-related protein 2 27.3 90 0.0031 23.2 4.6 44 30-73 63-112 (152)
88 3sjb_C Golgi to ER traffic pro 27.1 81 0.0028 21.7 4.0 31 88-118 48-78 (93)
89 3w03_C DNA repair protein XRCC 26.7 92 0.0031 23.8 4.7 30 86-115 149-178 (184)
90 1pwb_A SP-D, PSP-D, pulmonary 26.7 77 0.0026 22.2 4.1 22 94-115 29-50 (177)
91 3mov_A Lamin-B1; LMNB1, B-type 26.6 87 0.003 21.2 4.1 21 93-113 41-61 (95)
92 1uo4_A General control protein 26.5 97 0.0033 17.7 4.2 27 91-117 3-29 (34)
93 4emc_A Monopolin complex subun 26.4 89 0.003 24.2 4.6 20 94-113 32-51 (190)
94 3m48_A General control protein 26.2 96 0.0033 17.6 4.1 26 92-117 3-28 (33)
95 3c3f_A Alpha/beta peptide with 26.1 98 0.0034 17.7 4.4 27 91-117 3-29 (34)
96 1k8k_G P16, ARP2/3 complex 16 26.1 95 0.0032 23.0 4.5 44 30-73 62-111 (151)
97 2l5g_A GPS2 protein, G protein 26.0 67 0.0023 18.8 2.9 19 94-112 13-31 (38)
98 2wuj_A Septum site-determining 25.9 51 0.0017 20.2 2.6 21 91-111 36-56 (57)
99 3m9b_A Proteasome-associated A 25.8 72 0.0025 25.6 4.1 24 94-117 73-96 (251)
100 2zjr_V 50S ribosomal protein L 25.7 48 0.0017 21.0 2.5 22 99-120 12-33 (67)
101 3v86_A De novo design helix; c 25.5 86 0.0029 16.8 4.1 24 91-114 2-25 (27)
102 1rtm_1 Mannose-binding protein 25.3 85 0.0029 21.2 4.0 20 91-110 6-25 (149)
103 4fi5_A Nucleoprotein; structur 25.3 85 0.0029 22.4 4.0 24 90-113 23-46 (113)
104 3swk_A Vimentin; cytoskeleton, 25.2 80 0.0027 20.9 3.7 26 91-116 2-27 (86)
105 3tnu_B Keratin, type II cytosk 25.1 97 0.0033 21.5 4.3 39 68-113 61-99 (129)
106 3mq7_A Bone marrow stromal ant 25.0 1E+02 0.0036 22.2 4.4 32 88-119 70-101 (121)
107 3swy_A Cyclic nucleotide-gated 25.0 1.1E+02 0.0038 18.4 4.0 21 93-113 16-36 (46)
108 2lw1_A ABC transporter ATP-bin 24.8 1E+02 0.0034 20.1 4.1 24 93-116 19-42 (89)
109 2jr2_A UPF0352 protein CPS_261 24.6 52 0.0018 22.0 2.6 20 53-72 41-60 (76)
110 1lqb_D HIF-1 alpha, hypoxia-in 24.4 18 0.0006 20.8 0.2 13 28-42 13-25 (34)
111 1nkp_A C-MYC, MYC proto-oncoge 24.4 1.3E+02 0.0046 19.7 4.7 26 88-113 51-76 (88)
112 2p9x_A Hypothetical protein PH 24.2 27 0.00092 24.5 1.1 15 36-50 44-59 (99)
113 3q0x_A Centriole protein; cent 24.1 93 0.0032 24.4 4.4 28 90-117 179-206 (228)
114 4fi5_A Nucleoprotein; structur 23.9 87 0.003 22.4 3.8 22 89-110 69-90 (113)
115 3mq9_A Bone marrow stromal ant 23.8 2.3E+02 0.0077 22.9 6.9 61 47-117 365-425 (471)
116 3l4f_A RHO guanine nucleotide 23.7 1.5E+02 0.0051 19.0 4.8 27 88-114 6-32 (61)
117 1buu_A Protein (mannose-bindin 23.7 83 0.0028 21.9 3.8 26 86-111 20-45 (168)
118 3tnu_A Keratin, type I cytoske 23.6 1.1E+02 0.0037 21.4 4.3 39 68-113 63-101 (131)
119 2w6b_A RHO guanine nucleotide 23.4 1.5E+02 0.005 18.7 4.9 26 88-113 9-34 (56)
120 3u5e_h 60S ribosomal protein L 23.2 94 0.0032 22.1 3.9 26 98-123 14-39 (120)
121 1wlq_A Geminin; coiled-coil; 2 23.1 97 0.0033 21.0 3.8 25 91-115 40-64 (83)
122 1go4_E MAD1 (mitotic arrest de 22.9 1.2E+02 0.0041 21.0 4.3 32 92-123 22-53 (100)
123 3q4f_C DNA repair protein XRCC 22.9 88 0.003 24.1 3.9 25 87-111 159-183 (186)
124 1vf6_A PALS-1, PALS1-associate 22.7 91 0.0031 21.1 3.6 22 88-109 40-61 (83)
125 3qh9_A Liprin-beta-2; coiled-c 22.5 1E+02 0.0036 20.7 3.8 24 89-112 54-77 (81)
126 2wt7_B Transcription factor MA 22.5 1.3E+02 0.0046 20.4 4.4 26 90-115 49-74 (90)
127 3u59_A Tropomyosin beta chain; 22.5 1.3E+02 0.0045 20.0 4.4 25 89-113 44-68 (101)
128 3edu_A Beta-I spectrin, spectr 22.4 93 0.0032 22.4 3.9 44 73-116 124-167 (218)
129 3uun_A Dystrophin; triple heli 22.1 1.6E+02 0.0053 18.6 5.3 37 80-116 27-63 (119)
130 3ceg_A Baculoviral IAP repeat- 21.8 86 0.0029 25.7 3.9 40 69-108 273-314 (323)
131 3tnu_B Keratin, type II cytosk 21.7 1.2E+02 0.0042 20.9 4.3 23 89-111 36-58 (129)
132 3cxj_A Uncharacterized protein 21.6 67 0.0023 24.1 3.0 28 54-81 66-93 (165)
133 1slq_A VP4; beta sandwich, gre 21.4 40 0.0014 27.3 1.8 36 81-116 234-269 (278)
134 3c3g_A Alpha/beta peptide with 21.3 1.2E+02 0.0042 17.2 4.4 26 92-117 3-28 (33)
135 3gm3_A Protein tyrosine kinase 21.3 12 0.0004 28.2 -1.3 24 78-101 18-45 (153)
136 1dw0_A Cytochrome C; asparagin 21.2 1.1E+02 0.0036 21.6 3.8 69 4-72 34-109 (112)
137 4gkw_A Spindle assembly abnorm 21.1 81 0.0028 23.6 3.3 25 98-122 142-166 (167)
138 1j8b_A YBAB; hypothetical prot 20.9 74 0.0025 22.0 2.9 26 91-116 10-35 (112)
139 3uul_A Utrophin; spectrin repe 20.9 1.7E+02 0.0057 18.5 5.9 37 80-116 27-63 (118)
140 2zkr_v 60S ribosomal protein L 20.8 77 0.0026 22.7 3.1 23 98-120 14-36 (123)
141 1dip_A Delta-sleep-inducing pe 20.8 78 0.0027 21.2 2.8 24 90-113 23-46 (78)
142 3bbp_D GRIP and coiled-coil do 20.8 1.3E+02 0.0046 19.8 3.9 55 43-108 7-62 (71)
143 1z0k_B FYVE-finger-containing 20.7 1.4E+02 0.0048 19.4 4.1 41 63-109 26-66 (69)
144 3rrk_A V-type ATPase 116 kDa s 20.6 1.2E+02 0.0041 23.8 4.5 49 67-116 199-253 (357)
145 3iz5_c 60S ribosomal protein L 20.4 79 0.0027 22.7 3.1 22 98-119 16-37 (124)
146 4a17_U RPL35, 60S ribosomal pr 20.3 80 0.0027 22.7 3.1 23 98-120 15-37 (124)
147 1lrv_A LRV, leucine-rich repea 20.3 36 0.0012 26.2 1.3 22 11-32 12-40 (244)
148 3jyw_X 60S ribosomal protein L 20.2 43 0.0015 22.6 1.5 24 98-121 13-36 (86)
149 1aa0_A Fibritin, gpwac E; bact 20.2 1.9E+02 0.0066 20.5 5.0 32 91-122 59-90 (113)
150 3f31_A Spectrin alpha chain, b 20.0 1.5E+02 0.0052 20.3 4.5 45 70-114 59-103 (149)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=91.42 E-value=0.33 Score=27.67 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|.|-.|+++|..|+.|++.++-||+..+
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998664
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=82.17 E-value=2.9 Score=25.98 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQ 109 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~ 109 (129)
+.|..|+.+|..|+..|..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777776554
No 3
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=75.24 E-value=12 Score=25.86 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=33.8
Q ss_pred HHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 73 VYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 73 ~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
+|+.+-=.-||-.= -+-|...-..|+.|+++|...+..|+..
T Consensus 47 vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 47 VYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887777777553 7888888899999999999988888754
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=73.35 E-value=6.7 Score=25.57 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
+-.|..|+.++..++.++..++.+....+.+-
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999988888666543
No 5
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=72.65 E-value=8.2 Score=24.08 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 041989 94 LQQQVESLQAQLALAQAEVEQMRMRLISPSS 124 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~~~r~~~~~~~~ 124 (129)
-|..|=..+-||..++..|+.+|.+++...+
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~kY~~~~ 43 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQQYKFLP 43 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3555667788999999999999999987643
No 6
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=71.87 E-value=7 Score=22.23 Aligned_cols=28 Identities=18% Similarity=0.510 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|.+-.+++++..++.||+..+-||+.++
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888999999988888765
No 7
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.96 E-value=5.8 Score=28.84 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el 112 (129)
|-|-.|.++|.++.+++..++.+.
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444444333
No 8
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.67 E-value=5.4 Score=24.42 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+.|..|+.+|..|+.+|+.++..|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588899999999999998887664
No 9
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=67.06 E-value=9.5 Score=27.07 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 86 GCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 86 Gc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|..|.+..|+.++...+.+++.+++++..++
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk 31 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYK 31 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888877776544
No 10
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=64.45 E-value=14 Score=23.39 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
..+..|+.++..|+.+...+..++..++.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999998888877653
No 11
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=63.74 E-value=9.7 Score=20.79 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
|..|++....|+.|++.+.-||+..
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888999999999988888753
No 12
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=63.37 E-value=13 Score=24.35 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
+-.|..|+.++..|+.++..++.++...
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678899999999999999998888743
No 13
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=61.43 E-value=14 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
....|++||+.++.|++.++.++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 457788888888888877766655
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.34 E-value=14 Score=24.56 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
..|..|+.+|.....++..+|.+|-.+|.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45788888888888888888888877654
No 15
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.53 E-value=12 Score=24.24 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
+-.|..|+.++..|+.++..++.|
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777777777766654
No 16
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=53.23 E-value=5.9 Score=27.20 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
|-.||.+|.+|+++++.+++||..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999873
No 17
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.18 E-value=27 Score=21.44 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
.|..|+.++..|+.|...++.++..++.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888876543
No 18
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.64 E-value=22 Score=20.44 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+...|+.|++++.|-+.+..|+-
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 56678888888888888887764
No 19
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=51.24 E-value=56 Score=23.09 Aligned_cols=46 Identities=4% Similarity=0.086 Sum_probs=31.7
Q ss_pred HHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 71 SMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 71 Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.++.+...-..-|..--...|..|+.++..++.+++.++.+++...
T Consensus 14 ~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 14 RLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444456677788888888888888888888887654
No 20
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=50.12 E-value=21 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
..+|+.++..++.++..+++||..++.+.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999887653
No 21
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=49.89 E-value=26 Score=22.87 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
.|..|+..++.-..++..++.+|-+++.--
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888888888888665543
No 22
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=48.10 E-value=61 Score=21.89 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.3
Q ss_pred HhhhchHHHHHhhcCchhhH
Q 041989 47 VFGASNVNKMLQELQEHQRS 66 (129)
Q Consensus 47 vFG~snv~k~L~~l~~~~R~ 66 (129)
-=|+.|+++++.+-+..+|.
T Consensus 24 K~GAENmi~~y~~g~~~drK 43 (81)
T 1urf_A 24 KQGAENMIQTYSNGSTKDRK 43 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHcCCchhHH
Confidence 35999999999998877773
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.73 E-value=16 Score=22.46 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
-+-.|+.++..|+++++.+++++...
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666533
No 24
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.89 E-value=31 Score=20.73 Aligned_cols=24 Identities=8% Similarity=0.443 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 94 LQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
|-++|+.+-.|++.+.++|..++-
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777775544
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.43 E-value=36 Score=20.86 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
-...|+.+++.|+.+++.++++|.
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888888888876
No 26
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=45.31 E-value=37 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 93 SLQQQVESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
..-++-++|++.+-.++.||+.+|.--..+
T Consensus 7 ~iLqERNELKa~vf~lqeEL~yY~~e~l~~ 36 (65)
T 1yhn_B 7 QILQERNELKAKVFLLKEELAYFQRELLTD 36 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 444667889999999999999988755443
No 27
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.01 E-value=37 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
|..|+.++..|+.+-..++.+|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 28
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=44.80 E-value=45 Score=20.40 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+..|..+...|+.++..++.|+..++
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 29
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=44.30 E-value=18 Score=30.64 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhhhchHHHHHhh---cCchhhHHHHHHHHHHHh----hcccCCCCcchHH------------------HH
Q 041989 38 PQKFASVHKVFGASNVNKMLQE---LQEHQRSEAVSSMVYEAN----ARFHDPVRGCVGA------------------IS 92 (129)
Q Consensus 38 ~~~F~~vhkvFG~snv~k~L~~---l~~~~R~~a~~Sl~YEA~----aR~rDPVyGc~G~------------------I~ 92 (129)
.+.++.+++.|...+-.=++|. +.++++.+-.+-+|++.+ +++.-|+.||+-+ +.
T Consensus 143 ~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~ 222 (424)
T 2pbi_A 143 KENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVT 222 (424)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHH
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHH
Confidence 3566678888877776666664 445555566677777666 7889999998743 45
Q ss_pred HHHHHHHHHHHHHH
Q 041989 93 SLQQQVESLQAQLA 106 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~ 106 (129)
.++.+|++|+.+|.
T Consensus 223 ~~r~~veqLk~~l~ 236 (424)
T 2pbi_A 223 AVRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 67777877777763
No 30
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=43.57 E-value=20 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
..+..+|+.|+.+|..++.+|..+
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l 42 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELT 42 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555433
No 31
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=43.55 E-value=43 Score=21.91 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+-.|..|+.+...++.+...++.+....+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888877766544
No 32
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=41.88 E-value=48 Score=20.21 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
..|..|+..|+.|+.+|...+.+...++
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3578899999999999998887766544
No 33
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.53 E-value=44 Score=23.71 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 041989 68 AVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQ 109 (129)
Q Consensus 68 a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~ 109 (129)
-+..|.-||.. +|..|+.+|..|++||+..+
T Consensus 30 ele~l~~E~q~-----------~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 30 QLENMKTESQR-----------VVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 34556666654 57889999999999998864
No 34
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.98 E-value=47 Score=20.70 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+..|..+...|+.++..++.|+..++
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666544
No 35
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=40.87 E-value=83 Score=21.39 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 40 KFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 40 ~F~~vhkvFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
-+..+||+-|++..+.. +..+ .-+...|..+|..+|+-..-..+..|..+|..+..++....++
T Consensus 52 l~~~aHkLkGaa~~~Ga-----~~L~---~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 52 MLSTIHKLHGASCYCGV-----PTTQ---RLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHTTTTC-----HHHH---HHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCH-----HHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34447888887765432 1111 1223456677888887777777777877777776665554443
No 36
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.38 E-value=45 Score=20.57 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
..|+.++..++.++..+++|-+
T Consensus 21 dqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 21 DQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 37
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=39.90 E-value=49 Score=23.36 Aligned_cols=29 Identities=7% Similarity=0.357 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-+.|..+..+|..+..++..++.||++++
T Consensus 75 d~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 75 NTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888999999999998775
No 38
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=39.78 E-value=36 Score=22.02 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
.++|..+|..++.||...|+|+..-
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~atg 42 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQASIG 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888888888887443
No 39
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=39.17 E-value=43 Score=20.69 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~ 113 (129)
++..|..++++|..++++++
T Consensus 5 ~q~~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444
No 40
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=39.07 E-value=44 Score=18.01 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el 112 (129)
-.|..++++||..|..++.+|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888877665
No 41
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.78 E-value=50 Score=22.54 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=31.6
Q ss_pred HHHHhhcCch------hhHHHHHHHHHHHhhccc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 54 NKMLQELQEH------QRSEAVSSMVYEANARFH--DPVRGCVGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 54 ~k~L~~l~~~------~R~~a~~Sl~YEA~aR~r--DPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
..+|..++.+ ++.....-=.|-+++|.+ +=+..--..+..|+.+++.|+.|++.++.|+..+
T Consensus 12 N~~L~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 12 NRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543 344556666888888875 2222222334444444555555555554444433
No 42
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.54 E-value=68 Score=19.54 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+..|+.++..|..+...++.++..++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444
No 43
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.16 E-value=53 Score=22.15 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
-+..|+.+...|+.++..++.|+..++..
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777755543
No 44
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=36.99 E-value=55 Score=21.11 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 93 SLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.|++++..+|.+|..+|.|-..+|
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhc
Confidence 455555555556666666655555
No 45
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=36.92 E-value=7.9 Score=22.33 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
.|..++..|..++.|+..++.++...
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777776643
No 46
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=36.44 E-value=60 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
..+..|+.+|+.|+.+|..++..|..
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888777766653
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.40 E-value=73 Score=19.53 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+..|..+...|+.++..++.|+.
T Consensus 31 v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 31 VKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555554444
No 48
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.23 E-value=53 Score=21.63 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.+..++.+|..++++|+.++++++
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555
No 49
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=36.12 E-value=26 Score=22.05 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
.++|+.+|..++.||...|+|+..
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~at 34 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAAS 34 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777777777644
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.66 E-value=56 Score=22.14 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
=.-|..|+..|..++.+|..++..|..
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888777764
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.53 E-value=66 Score=19.87 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
-+..|+.+...|+.++..++.++..++
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777776554
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.46 E-value=49 Score=21.39 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 64 QRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 64 ~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.|.+.+..-+=+++-|.. -.-.-|..|+..|..++.+|..++..|.
T Consensus 20 ~~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554431 1235577788888888888877777665
No 53
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=34.93 E-value=69 Score=21.10 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
-+..|..+...|+.++..++.|+..++..-
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888999999999888777543
No 54
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.77 E-value=58 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.+-|-.||.+|...+.||..++.+|..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkd 60 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKD 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999988873
No 55
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=34.62 E-value=59 Score=21.22 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 71 SMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 71 Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.-+-|+..|.... +..++..|..++++|..++++++
T Consensus 15 ~~l~e~e~~~~~~-------~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 15 RQMREMEENFAVE-------AANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554333 34455555555555555555544
No 56
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.52 E-value=59 Score=21.95 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=28.6
Q ss_pred HhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 76 ANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 76 A~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
-++|..+|-. =..++.+|...+.+|+.++.++...+..
T Consensus 59 lE~r~~p~~~-----R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 59 LEVREIPPQS-----RGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHTTSCTTT-----HHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHhCCHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455554422 3478999999999999999999877665
No 57
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=34.22 E-value=59 Score=24.78 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 62 EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 62 ~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.+.|.++++-|+=.| ...|..||.+|+.|+.+|...+.+-..++
T Consensus 119 a~~paE~ireli~~A-----------ertV~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 119 VENPAEVIRELICYC-----------LDTTAKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp CSCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888887655 46789999999999999988887766443
No 58
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.18 E-value=39 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALA 108 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~ 108 (129)
|..|.++|+.|+.||..+
T Consensus 58 i~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 58 STEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 455555555555555443
No 59
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.92 E-value=74 Score=20.56 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~~ 114 (129)
|..++..|+.++..++.|+..
T Consensus 48 l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555543
No 60
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=33.79 E-value=50 Score=23.42 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQA 110 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~ 110 (129)
++|+.||.+|.+|+.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776654
No 61
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=33.49 E-value=55 Score=21.93 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQA 110 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~ 110 (129)
+.|+.|+..|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777777776654
No 62
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.36 E-value=62 Score=21.95 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 93 SLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
.|+..|..|+++++.+..+|...+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554443
No 63
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.23 E-value=73 Score=18.47 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
..+|...++.|..+...+++|.++.|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 356777777777777777777776553
No 64
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.02 E-value=46 Score=18.03 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 93 SLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
.|+-+...|+..++.++.+|+..
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 35555566666667777666654
No 65
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=32.93 E-value=1.6e+02 Score=24.72 Aligned_cols=80 Identities=13% Similarity=0.258 Sum_probs=56.0
Q ss_pred CC--ChHHHHHHHHHhhhchHHHHHhhcC-chhhHHHH--HHHHHHHhhcccCCCCc---chHHHHHHHHHHHHHHHHHH
Q 041989 35 AD--EPQKFASVHKVFGASNVNKMLQELQ-EHQRSEAV--SSMVYEANARFHDPVRG---CVGAISSLQQQVESLQAQLA 106 (129)
Q Consensus 35 ~~--~~~~F~~vhkvFG~snv~k~L~~l~-~~~R~~a~--~Sl~YEA~aR~rDPVyG---c~G~I~~Lq~qi~~lq~eL~ 106 (129)
|+ +-+.|..+...||..++-.+-.++. -..-+++- ....|+=. +=|.| -++.|-..+.+|..++.+..
T Consensus 126 WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry----~Ei~d~erii~~IEkgE~ki~r~~~~~~ 201 (374)
T 2y9y_A 126 WNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI----ERIEDYEKYLKIIENEEEKIKRVKMQQE 201 (374)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC----SSCSCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh----hhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 4678888999999999999999986 22222222 22233321 22333 68889999999999999999
Q ss_pred HHHHHHHHHhhc
Q 041989 107 LAQAEVEQMRMR 118 (129)
Q Consensus 107 ~~~~el~~~r~~ 118 (129)
.+...+..++.+
T Consensus 202 ~L~~Ki~~y~~P 213 (374)
T 2y9y_A 202 ALRRKLSEYKNP 213 (374)
T ss_dssp HHHHHHTTCSSH
T ss_pred HHHHHHHHccCC
Confidence 999888855543
No 66
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=32.74 E-value=39 Score=21.40 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 041989 99 ESLQAQLALAQAEVEQMRMRLI 120 (129)
Q Consensus 99 ~~lq~eL~~~~~el~~~r~~~~ 120 (129)
++|+.+|..++.||...|+|+.
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~a 33 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLA 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777776664
No 67
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.42 E-value=39 Score=21.84 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
.++|..+|..++.||..+|+|+..
T Consensus 11 ~~EL~~~L~elk~ELf~LR~q~at 34 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERGLLTM 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888888887743
No 68
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.20 E-value=30 Score=23.55 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
..|..|+.++..|+.++..+.++|.
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999887653
No 69
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=31.11 E-value=75 Score=20.67 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=4.9
Q ss_pred HHHHHHHh
Q 041989 109 QAEVEQMR 116 (129)
Q Consensus 109 ~~el~~~r 116 (129)
..||+.||
T Consensus 46 e~EIatYR 53 (74)
T 2xv5_A 46 DMEIHAYR 53 (74)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666666
No 70
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=30.90 E-value=44 Score=20.20 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHH
Q 041989 83 PVRGCVGAISSLQQQVESLQAQL 105 (129)
Q Consensus 83 PVyGc~G~I~~Lq~qi~~lq~eL 105 (129)
-|.|.+|+|...-++|-.+-.+|
T Consensus 20 ~iPGPVG~~asGi~~l~~l~~~l 42 (44)
T 2z2q_B 20 NIPGPIGVAASGISGLSALFEGF 42 (44)
T ss_pred cCCCchhHHHHhHHHHHHHHHHh
Confidence 48899999999999988776554
No 71
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=30.82 E-value=42 Score=26.15 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=19.3
Q ss_pred hHHHHHhhcCc--hhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 52 NVNKMLQELQE--HQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 52 nv~k~L~~l~~--~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.|...|++=|. .++++.+..| ++-.|.. |.|+-..+|++.+++++..++.+|.
T Consensus 35 ~V~~yL~~~PdFf~~~~~Ll~~L------~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L~ 89 (252)
T 3e98_A 35 QVAAYLSQHPEFFVEHDELIPEL------RIPHQPG---DAVSLVERQVRLLRERNIEMRHRLS 89 (252)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHhhCHHHHHhC------CCCCCCC---CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555453 4455665544 5666763 7778888888888888888887775
No 72
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=30.77 E-value=82 Score=23.14 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMRLISPSSSS 126 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~~~~~ 126 (129)
+..+-.|++.|-.||..+-++++..+.|+.+---+|
T Consensus 100 L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~~~~~ 135 (140)
T 3iyn_Q 100 LTALLAQLDSLTRELNVVSQQLLDLRQQVSALKASS 135 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 445566777777888888888887777775544443
No 73
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=30.17 E-value=45 Score=21.44 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
.++|+.+|..++.||...|+|+..
T Consensus 14 ~~EL~~~l~elk~ELf~LR~q~at 37 (71)
T 1vq8_V 14 PAEREAELDDLKTELLNARAVQAA 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888888888888888755
No 74
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.68 E-value=66 Score=22.36 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQA 110 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~ 110 (129)
+.|+.|+..|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888888888888887765
No 75
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=29.57 E-value=78 Score=21.95 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHhhcCc--hhhHHHHHHHHHHHhhccc------CCCCcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 56 MLQELQE--HQRSEAVSSMVYEANARFH------DPVRGCVGA---ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 56 ~L~~l~~--~~R~~a~~Sl~YEA~aR~r------DPVyGc~G~---I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|+-.+.| ..-++++.||-|-+.++.. +-.....-. +.....++..|+.++..++.||..+|
T Consensus 45 ~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 45 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp EEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444 3568999999999887632 111122222 33344455666777777777777665
No 76
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=29.33 E-value=47 Score=24.36 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
|-+..+..|.++.|+++..+|+||+....
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~~ev 69 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEKTV 69 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCEE
Confidence 35788999999999999999999997554
No 77
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.32 E-value=92 Score=21.57 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+.|..|++||..+..+-+.+..+|...+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888777777776666544
No 78
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=29.04 E-value=1.2e+02 Score=20.13 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
|..+..++..++..|..++.++..+.+..+-|
T Consensus 17 iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip 48 (74)
T 1avy_A 17 IASVRQEVNTAKGNISSLQGDVQALQEAGYIP 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhhhheeeccccchhhhhhhhhHHHHhcCCCC
Confidence 56777888888888888888888877766544
No 79
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=28.97 E-value=60 Score=21.75 Aligned_cols=26 Identities=8% Similarity=0.293 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.+-|-.||..|...+.||..++..|.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLk 29 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLK 29 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999988887
No 80
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=28.96 E-value=50 Score=19.96 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=18.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHH
Q 041989 83 PVRGCVGAISSLQQQVESLQAQL 105 (129)
Q Consensus 83 PVyGc~G~I~~Lq~qi~~lq~eL 105 (129)
-|.|.+|+|...-++|-.|-.+|
T Consensus 20 ~iPGPVG~~asGi~gl~~l~~~~ 42 (44)
T 1nov_D 20 TIPGPVGVAATGIKGIIETIGSL 42 (44)
T ss_pred cCCCchhHHHHhHHHHHHHHHHh
Confidence 48899999999999987775554
No 81
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.83 E-value=1e+02 Score=18.81 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
+..|..+...|-.-|..++.||..++.
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555556666777777765553
No 82
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.67 E-value=84 Score=20.88 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.-|..|+++|..|.-+++....+|..+.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455666666666666666665555443
No 83
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=28.52 E-value=20 Score=24.63 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041989 92 SSLQQQVESLQAQLALA 108 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~ 108 (129)
..||+||..|+.||+.+
T Consensus 29 k~lq~QL~~Lk~ELe~l 45 (90)
T 1ef1_C 29 ERVQKHLKALTSELANA 45 (90)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666554
No 84
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=28.01 E-value=73 Score=22.12 Aligned_cols=25 Identities=8% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+-|-.||.+|...+.||..++..|.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLk 29 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLK 29 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999988886
No 85
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.94 E-value=64 Score=22.86 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 041989 95 QQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 95 q~qi~~lq~eL~~~~~el~~~r 116 (129)
+.-|.+|+.++..+.++|+..|
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666443
No 86
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.47 E-value=83 Score=21.29 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.-.|..+|..++.|++.++.++...|
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777766666655433
No 87
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=27.29 E-value=90 Score=23.16 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCCCC---ChHHHHHHHHHhhhc---hHHHHHhhcCchhhHHHHHHHH
Q 041989 30 APYFPAD---EPQKFASVHKVFGAS---NVNKMLQELQEHQRSEAVSSMV 73 (129)
Q Consensus 30 aPyFp~~---~~~~F~~vhkvFG~s---nv~k~L~~l~~~~R~~a~~Sl~ 73 (129)
.||-.-+ +...+..|.+|+..- -|.++++.|..++.+-+|+-|+
T Consensus 63 pP~~~~~~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D~LMKYiY 112 (152)
T 3dwl_G 63 VPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIY 112 (152)
T ss_dssp CCCSCSCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHccHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4666553 345677788887654 4999999999999888888764
No 88
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.07 E-value=81 Score=21.72 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMRMR 118 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~ 118 (129)
+.---.|.++++.+..||+.++.+|...|..
T Consensus 48 FAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 48 YAKWTKNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556689999999999999999999866643
No 89
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.70 E-value=92 Score=23.76 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 86 GCVGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 86 Gc~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
.|++.|..|+.++..|+.|...++.|....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777778777777777777766543
No 90
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=26.69 E-value=77 Score=22.17 Aligned_cols=22 Identities=50% Similarity=0.536 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
+.++|..|+.+|..++.+|..+
T Consensus 29 ~~~~l~~L~~~l~~Lq~~l~~l 50 (177)
T 1pwb_A 29 LRQQVEALQGQVQHLQAAFSQY 50 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444433
No 91
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.60 E-value=87 Score=21.16 Aligned_cols=21 Identities=5% Similarity=0.185 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041989 93 SLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.++..|..++++|..++++++
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 92
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.48 E-value=97 Score=17.74 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
..+|..+++.|-.+...+.+|+++++.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 357888888888888888888887764
No 93
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.38 E-value=89 Score=24.15 Aligned_cols=20 Identities=10% Similarity=0.381 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~ 113 (129)
|.+|++..+.|+..++.+|+
T Consensus 32 L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 94
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.25 E-value=96 Score=17.63 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 92 SSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
.+|..++++|-.+-..+++|+++.+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46888888888888888888887664
No 95
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.11 E-value=98 Score=17.70 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
..+|..+++.|-.+...+++|.+++|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 357888888888888888888887664
No 96
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=26.07 E-value=95 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCCCCCC---ChHHHHHHHHHhhh---chHHHHHhhcCchhhHHHHHHHH
Q 041989 30 APYFPAD---EPQKFASVHKVFGA---SNVNKMLQELQEHQRSEAVSSMV 73 (129)
Q Consensus 30 aPyFp~~---~~~~F~~vhkvFG~---snv~k~L~~l~~~~R~~a~~Sl~ 73 (129)
+||-.-+ +...+..|++|... +-|.++++.|.+++.+-+|+-|+
T Consensus 62 pP~~~k~q~~K~~~~~~Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYiY 111 (151)
T 1k8k_G 62 PPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIY 111 (151)
T ss_dssp CCSSCSCHHHHHHHHHHHHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHHhChhhhhHHHHHHH
Confidence 4666666 45667778887654 56899999999999988888764
No 97
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.03 E-value=67 Score=18.83 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041989 94 LQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el 112 (129)
-..||..++.+|..+++|-
T Consensus 13 tkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776654
No 98
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.91 E-value=51 Score=20.18 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~e 111 (129)
+-.|..++..|+.+++.++.+
T Consensus 36 ~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 36 YEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555543
No 99
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.83 E-value=72 Score=25.55 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 94 LQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 94 Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
|...+..++.||..+++||..++.
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555556666666666665544
No 100
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=25.67 E-value=48 Score=21.03 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 041989 99 ESLQAQLALAQAEVEQMRMRLI 120 (129)
Q Consensus 99 ~~lq~eL~~~~~el~~~r~~~~ 120 (129)
++|..+|..++.||...|+++.
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~a 33 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELRFQAA 33 (67)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777776666654
No 101
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.46 E-value=86 Score=16.81 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
+.+|+.++-+|+-|...++.|...
T Consensus 2 vyqlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhc
Confidence 467888888888888888877653
No 102
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=25.32 E-value=85 Score=21.16 Aligned_cols=20 Identities=15% Similarity=0.556 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQA 110 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~ 110 (129)
|..|+.++..|+..|..++.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444443
No 103
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.25 E-value=85 Score=22.42 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
-|-.||.+|...+.||..++.+|.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLk 46 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVR 46 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999988886
No 104
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.23 E-value=80 Score=20.85 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
|..|++||..+..+-+.+..|+-..+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~ 27 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLA 27 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677788777777777666666544
No 105
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.06 E-value=97 Score=21.49 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 68 AVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 68 a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
....-+-|+..|-.- .+..++..|..++++|..++.+++
T Consensus 61 ~LE~~l~e~e~~~~~-------~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 61 NLQNAIADAEQRGEL-------ALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334445566665432 344555555555555555555554
No 106
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.99 E-value=1e+02 Score=22.20 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~ 119 (129)
--.|..|+-+|..|..+|..+-+++.+.|...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33588899999999999999999999888765
No 107
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.97 E-value=1.1e+02 Score=18.36 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041989 93 SLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.||-.+..|-+|....|..|.
T Consensus 16 ~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 16 TLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 108
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.80 E-value=1e+02 Score=20.12 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 93 SLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 93 ~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
..|.+++.|..+|+.+.++|+.+.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554433
No 109
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=24.57 E-value=52 Score=22.04 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=16.2
Q ss_pred HHHHHhhcCchhhHHHHHHH
Q 041989 53 VNKMLQELQEHQRSEAVSSM 72 (129)
Q Consensus 53 v~k~L~~l~~~~R~~a~~Sl 72 (129)
++++|.++|+.+|...+++.
T Consensus 41 vTnlln~V~~~qR~~iAe~F 60 (76)
T 2jr2_A 41 VTNIIAQVPESKRVAVVDNF 60 (76)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56777899999998887765
No 110
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=24.42 E-value=18 Score=20.85 Aligned_cols=13 Identities=46% Similarity=1.081 Sum_probs=9.6
Q ss_pred ccCCCCCCCChHHHH
Q 041989 28 VFAPYFPADEPQKFA 42 (129)
Q Consensus 28 ~laPyFp~~~~~~F~ 42 (129)
.+|||.|-+ ..|+
T Consensus 13 mLAPYIpMd--dDFq 25 (34)
T 1lqb_D 13 MLAPYIPMD--DDFQ 25 (34)
T ss_pred HhcCccccC--cccc
Confidence 589999977 4453
No 111
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.36 E-value=1.3e+02 Score=19.69 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+-.|..|+.+...++.++..++.+..
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~ 76 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888777776666655444
No 112
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=24.15 E-value=27 Score=24.46 Aligned_cols=15 Identities=60% Similarity=1.099 Sum_probs=12.8
Q ss_pred CChHHHHH-HHHHhhh
Q 041989 36 DEPQKFAS-VHKVFGA 50 (129)
Q Consensus 36 ~~~~~F~~-vhkvFG~ 50 (129)
++|++|.. |.++||.
T Consensus 44 eDP~kFkeaV~~LFGE 59 (99)
T 2p9x_A 44 DDPQKFKEAVSKLFGE 59 (99)
T ss_dssp HCHHHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 47999987 8999995
No 113
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.06 E-value=93 Score=24.43 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
-...|++.++++++|..+.+++|+..|.
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~ 206 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQ 206 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666664443
No 114
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.87 E-value=87 Score=22.37 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQA 110 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~ 110 (129)
++|+.|+..|.+|+.+|+...+
T Consensus 69 ~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 69 GVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776654
No 115
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.85 E-value=2.3e+02 Score=22.91 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred HhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 47 VFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 47 vFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
+.|...+-..|+++-..-. .+++.+.-|+++| -+-..||++|.++|.-+..++++-.....
T Consensus 365 l~G~~t~eeal~~~~~~i~-~~l~~~~~~~e~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 365 ASGRQTVDEALKDAQTRIT-AARDGLRAVMEAR---------NVTHLLQQELTEAQKGFQDVEAQAATANH 425 (471)
T ss_dssp HHSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH-HHHHhhHHHHHhh---------hHHHHHHHHHHHHhhhHHHHHHHhhhcch
No 116
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=23.72 E-value=1.5e+02 Score=18.96 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
|-.+..|.+++..|+++....+..+..
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~le~ 32 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKSLEE 32 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999988877766653
No 117
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=23.67 E-value=83 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 86 GCVGAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 86 Gc~G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
-+-..|..|+.+|..|+.+|..++..
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~~ 45 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNKL 45 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34557889999999999999998874
No 118
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.59 E-value=1.1e+02 Score=21.37 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 68 AVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 68 a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
....-+-|+..|-.- .+..++..|..++++|..++.+++
T Consensus 63 sLE~~l~e~e~~~~~-------~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 63 SLENSLEETKGRYCM-------QLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566665433 344555555555555555555554
No 119
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.42 E-value=1.5e+02 Score=18.73 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
|-.|..|.-|++.|+.|...++.-+.
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888777654443
No 120
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=23.15 E-value=94 Score=22.14 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISPS 123 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~~ 123 (129)
.++|..+|..++.||..+|+|+....
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~atgq 39 (120)
T 3u5e_h 14 KEQLASQLVDLKKELAELKVQKLSRP 39 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 46778888888888888888875543
No 121
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.06 E-value=97 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
-.+|..+|..++.|++.++.++...
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776666543
No 122
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.94 E-value=1.2e+02 Score=21.01 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 041989 92 SSLQQQVESLQAQLALAQAEVEQMRMRLISPS 123 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~~ 123 (129)
-.|..+...|..+++.+..+|.+..++..++.
T Consensus 22 ~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 22 EELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 33444444444445555555555445554443
No 123
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.86 E-value=88 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 87 CVGAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 87 c~G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
|++.|..|+.++..|+.|-..++.+
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888887777654
No 124
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=22.73 E-value=91 Score=21.13 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQ 109 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~ 109 (129)
++.|..||+-|.+|+.|+..+=
T Consensus 40 F~qILtlQqSikqLk~Qvn~~p 61 (83)
T 1vf6_A 40 FNQILTLQQSIKQLKGQLNHIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccCC
Confidence 5789999999999999998764
No 125
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.52 E-value=1e+02 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el 112 (129)
--|..||+++..-.+++..++.+|
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555555555555555555554
No 126
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.52 E-value=1.3e+02 Score=20.37 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
.+..|+.++..|+.|+..++.|+..+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777776666643
No 127
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.50 E-value=1.3e+02 Score=20.03 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.-|..|+..|..++.++..++..|.
T Consensus 44 ~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777776666655
No 128
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=22.41 E-value=93 Score=22.39 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=22.9
Q ss_pred HHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 73 VYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 73 ~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+-|.+.-..+|+.+-...|..|+++.+.++.+|+..+.++..++
T Consensus 124 l~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~ 167 (218)
T 3edu_A 124 IDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQ 167 (218)
T ss_dssp HHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555688888888899999999999999999888777543
No 129
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.07 E-value=1.6e+02 Score=18.58 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=31.0
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 80 FHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 80 ~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
..+|+.+-+-.|..+..+...++.+|..-+..+..+.
T Consensus 27 ~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~ 63 (119)
T 3uun_A 27 AQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNIL 63 (119)
T ss_dssp HHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3579999999999999999999999998887776443
No 130
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=21.82 E-value=86 Score=25.70 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=18.4
Q ss_pred HHHHHHHHhhcccCCCCcc--hHHHHHHHHHHHHHHHHHHHH
Q 041989 69 VSSMVYEANARFHDPVRGC--VGAISSLQQQVESLQAQLALA 108 (129)
Q Consensus 69 ~~Sl~YEA~aR~rDPVyGc--~G~I~~Lq~qi~~lq~eL~~~ 108 (129)
++.-+.|+.....|+-.|- .|.+..|.+.+.+|+.||+++
T Consensus 273 ~~~w~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~ 314 (323)
T 3ceg_A 273 CEEWIADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKL 314 (323)
T ss_dssp HHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhhccccccchhhhhHHHHHHHHHHHHHHHHHhc
Confidence 4455667777777775552 333445555655555555543
No 131
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.72 E-value=1.2e+02 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 89 GAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 89 G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
-.|..|.++|+.|+.||..++.+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555555555555555554443
No 132
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.65 E-value=67 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=24.2
Q ss_pred HHHHhhcCchhhHHHHHHHHHHHhhccc
Q 041989 54 NKMLQELQEHQRSEAVSSMVYEANARFH 81 (129)
Q Consensus 54 ~k~L~~l~~~~R~~a~~Sl~YEA~aR~r 81 (129)
.+.|.++++++|...+.+|.|+....-.
T Consensus 66 ~~~L~~l~~~eR~~fl~~i~~~Ll~~~v 93 (165)
T 3cxj_A 66 QAGIRALSMEKRTEFIWKVRFTLNRFGV 93 (165)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999876643
No 133
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=21.40 E-value=40 Score=27.32 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=31.3
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 81 HDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 81 rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+-||--.+-+=..|++||.+|..|...+-+|||.-+
T Consensus 234 QTPI~nSvTVRqDLerql~~LR~eFN~Lsq~iA~sq 269 (278)
T 1slq_A 234 QTPITNSVTVRQDLERQLGELREEFNALSQEIAMSQ 269 (278)
T ss_dssp CCCCBCCEECCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCccccchhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888889999999999999999999998543
No 134
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.35 E-value=1.2e+02 Score=17.16 Aligned_cols=26 Identities=0% Similarity=0.227 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 92 SSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 92 ~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
.+|..+++.|-.+-..+++|.++++.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56777788887777778888876654
No 135
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=21.32 E-value=12 Score=28.23 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=17.7
Q ss_pred hcccCCCCcc----hHHHHHHHHHHHHH
Q 041989 78 ARFHDPVRGC----VGAISSLQQQVESL 101 (129)
Q Consensus 78 aR~rDPVyGc----~G~I~~Lq~qi~~l 101 (129)
-|..|+||++ |+.|..|.++++.+
T Consensus 18 DRt~D~VY~at~~VVkaV~~Ls~~v~~a 45 (153)
T 3gm3_A 18 DRTDDLVYLNVMELVRAVLELKNELAQL 45 (153)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred CcCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 3777999988 57777788877544
No 136
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=21.21 E-value=1.1e+02 Score=21.59 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=39.5
Q ss_pred CCCCCCCCCChhhHHhhh----CCCCCC---ccCCCCCCCChHHHHHHHHHhhhchHHHHHhhcCchhhHHHHHHH
Q 041989 4 GTRQGALSPCAACKLIRR----RCAQDC---VFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSM 72 (129)
Q Consensus 4 ~~~~g~~~~CaaCk~lRR----~C~~~C---~laPyFp~~~~~~F~~vhkvFG~snv~k~L~~l~~~~R~~a~~Sl 72 (129)
+.+.|...+|+.|---.- +=...= ++||++-++...+.+.|-|-|+..----+=++..+.++.|.+.=|
T Consensus 34 ~~~~g~~pSCaSCHg~~p~~~g~~~tgk~I~p~Ap~~np~RftD~akvekwf~rnc~~v~gr~cta~EK~d~l~~l 109 (112)
T 1dw0_A 34 TGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKWLGRNCNSVIGRDCTPGEKADLLAWL 109 (112)
T ss_dssp SSSCTTCCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred ccCCCCCCcccccCCCCcccCcccccCCcccCcCCccCccccCCHHHHHHHHHhhhhHHHcccCCHHHHHHHHHHH
Confidence 445577899999965421 111223 345555444444445577778764333333566788888876543
No 137
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=21.11 E-value=81 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
.+.|+.|-..++..|+.||.|-|+|
T Consensus 142 FE~LkvENE~vkerl~mYR~QRfsp 166 (167)
T 4gkw_A 142 FEKLSMENENLKEKIAHYRAQRFSP 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhhhhHhHHHHHHHHHHhccCC
No 138
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=20.93 E-value=74 Score=22.01 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+..+..|.++.|.++..+|+||+...
T Consensus 10 m~~mmkqaq~mQ~~m~~~QeeL~~~~ 35 (112)
T 1j8b_A 10 LGGLMKQAQQMQEKMQKMQEEIAQLE 35 (112)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 45677888889999999999988544
No 139
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=20.89 E-value=1.7e+02 Score=18.51 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=31.3
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 80 FHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 80 ~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
..+|+++-.-.|..+..+...++.+|..-+..+..+.
T Consensus 27 ~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~ 63 (118)
T 3uul_A 27 EQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVL 63 (118)
T ss_dssp TSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999998888777443
No 140
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.83 E-value=77 Score=22.69 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLI 120 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~ 120 (129)
.++|..+|..++.||..+|+|+.
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~a 36 (123)
T 2zkr_v 14 KEELLKQLDDLKVELSQLRVAKV 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777664
No 141
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.83 E-value=78 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
.|..|..++.+|+.|-..++.-..
T Consensus 23 ~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 23 QIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466667777777777666665444
No 142
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=20.77 E-value=1.3e+02 Score=19.75 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=25.2
Q ss_pred HHHHHhhhchHHHHHhhcC-chhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 041989 43 SVHKVFGASNVNKMLQELQ-EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALA 108 (129)
Q Consensus 43 ~vhkvFG~snv~k~L~~l~-~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~ 108 (129)
+++.+|--.+.-.+.+.|. ...+-+-+.+|+.|+.+= ...|..|+..|+.||..+
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEat-----------narL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEAT-----------NAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665 346778899999998752 234778887777777654
No 143
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.71 E-value=1.4e+02 Score=19.42 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 041989 63 HQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQ 109 (129)
Q Consensus 63 ~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~ 109 (129)
.+....++++|.+|..-.+ +-.|-.|+.-|.+|+.|+...+
T Consensus 26 ~EQ~~~I~~yI~qAk~~~r------~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 26 LQQIHNITSFIRQAKAAGR------MDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHHHHHHHHh
Confidence 4566889999999987544 5566677777777766666544
No 144
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.56 E-value=1.2e+02 Score=23.81 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcccCCCCc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 67 EAVSSMVYEANARFHDPVRG------CVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 67 ~a~~Sl~YEA~aR~rDPVyG------c~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+-+..++-...+..- |+.+ ..-.|..|+.+|+.++.+|..++++|..+.
T Consensus 199 ~~v~~il~s~~f~~~-~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~ 253 (357)
T 3rrk_A 199 EAARSSLSRLGLAEL-RFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLS 253 (357)
T ss_dssp HHHHHHHHTTTCCBC-CCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeec-cCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444443333 4442 334788899999999999999988887543
No 145
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=20.43 E-value=79 Score=22.68 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 041989 98 VESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~ 119 (129)
.++|..+|..++.||..+|+|+
T Consensus 16 ~eEL~~~L~eLK~ELf~LRfq~ 37 (124)
T 3iz5_c 16 KDDLTKQLAELKTELGQLRIQK 37 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666677776666665
No 146
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=20.30 E-value=80 Score=22.65 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLI 120 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~ 120 (129)
.++|..+|..++.||..+|+|+.
T Consensus 15 ~eEL~~~L~eLK~ELf~LRfq~a 37 (124)
T 4a17_U 15 EEQLVGELGKLQTELSQLRIAKI 37 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777664
No 147
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=20.26 E-value=36 Score=26.25 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=19.2
Q ss_pred CCChhhHHhh-----hCCCCC--CccCCC
Q 041989 11 SPCAACKLIR-----RRCAQD--CVFAPY 32 (129)
Q Consensus 11 ~~CaaCk~lR-----R~C~~~--C~laPy 32 (129)
-.|+.|.|.- -+|.+. |+..+|
T Consensus 12 ~~c~~c~~~~~~~~~~~c~~~~~c~~~~~ 40 (244)
T 1lrv_A 12 GDCRVCSFRMSLLLTGRCTPGDACVAVES 40 (244)
T ss_dssp CCTTTSTTTTTTGGGTSSBTTTBCSSSSC
T ss_pred ccccCCCCcccchhcCCCCCCchHhhcCc
Confidence 5799999998 789987 999877
No 148
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.22 E-value=43 Score=22.65 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
.++|+.+|..++.||..+|+|+..
T Consensus 13 ~eEL~~~L~eLK~ELf~LRfq~at 36 (86)
T 3jyw_X 13 KEQLASQLVDLKKELAELKVQKLS 36 (86)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888887643
No 149
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.20 E-value=1.9e+02 Score=20.48 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 91 ISSLQQQVESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
|..+..++..++..|..++.++...++..+-|
T Consensus 59 i~~~t~~v~t~k~~i~~~e~~vqalq~ag~i~ 90 (113)
T 1aa0_A 59 IASVTQEVNTAKGNISSLQGDVQALQEAGYIP 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hhhhheeecccccchhhhhhhhHHHHhcCCCC
Confidence 67788889999999999999998888777654
No 150
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=20.03 E-value=1.5e+02 Score=20.32 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=35.0
Q ss_pred HHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 70 SSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 70 ~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
.+-+.|...-..|+.||-+..|..+..+...+++||..-+..+..
T Consensus 59 ~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~ 103 (149)
T 3f31_A 59 EKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVK 103 (149)
T ss_dssp HHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666678899999989999999999999999887666553
Done!